Citrus Sinensis ID: 035031

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-----
Protein Sequence
MKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEEIQASITKLSRR
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFlvpetkgrtLEEIQASITKLSRR
Flexible Loop (DISEMBL)
MKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFlvpetkgrtleeiqasitklsrr
Low Complexity Region (SEG)
MKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEEIQASITKLSRR
Disordered region (IsUnstruct)
****AGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKG****************
Disordered Region (DISOPRED)
MKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEEIQA*I******
Disordered Region (DISEMBL)
MKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEEIQ*********
Disordered Region (DISPRO)
MKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEEIQASIT*****
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEEIQASITKLSRR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	75	2.2.26 [Sep-21-2011]
Q94KE0	470	Sugar transporter ERD6-li	yes	no	0.893	0.142	0.522	9e-16
Q3ECP7	470	Sugar transporter ERD6-li	no	no	0.92	0.146	0.579	9e-16
Q8LBI9	482	Sugar transporter ERD6-li	no	no	0.946	0.147	0.492	1e-14
O04036	496	Sugar transporter ERD6 OS	no	no	0.84	0.127	0.539	1e-13
Q0WQ63	470	Sugar transporter ERD6-li	no	no	0.893	0.142	0.507	1e-13
Q9LTP6	488	Putative sugar transporte	no	no	0.946	0.145	0.464	3e-13
Q4F7G0	462	Sugar transporter ERD6-li	no	no	0.92	0.149	0.507	2e-12
Q93YP9	488	Sugar transporter ERD6-li	no	no	0.893	0.137	0.462	3e-12
Q9FRL3	487	Sugar transporter ERD6-li	no	no	0.893	0.137	0.477	3e-12
Q8GXK5	482	Sugar transporter ERD6-li	no	no	0.946	0.147	0.422	3e-12

>sp|Q94KE0|ERDL3_ARATH Sugar transporter ERD6-like 3 OS=Arabidopsis thaliana GN=SUGTL2 PE=2 SV=1

 Score = 82.4 bits (202), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 49/67 (73%)

Query: 5   AGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEE 64
           AG+LV   +    W + F ++FM+EW+ +GTF IF+ IC AG+ F+  +VPETKGRTLE+
Sbjct: 401 AGTLVTLANWSFGWIVAFAYNFMLEWNASGTFLIFFTICGAGIVFIYAMVPETKGRTLED 460

Query: 65  IQASITK 71
           IQAS+T 
Sbjct: 461 IQASLTD 467

Sugar transporter.
Arabidopsis thaliana (taxid: 3702)

>sp|Q3ECP7|ERDL5_ARATH Sugar transporter ERD6-like 5 OS=Arabidopsis thaliana GN=At1g54730 PE=2 SV=2

 Score = 82.0 bits (201), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 40/69 (57%), Positives = 49/69 (71%)

Query: 1   MKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGR 60
           +KG AGSLV  +    +W I+FTF+F+M W+  GTF +F  +C A V FV  LVPETKGR
Sbjct: 397 IKGSAGSLVTVVSWVGSWIISFTFNFLMNWNPAGTFYVFATVCGATVIFVAKLVPETKGR 456

Query: 61  TLEEIQASI 69
           TLEEIQ SI
Sbjct: 457 TLEEIQYSI 465

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LBI9|EDL16_ARATH Sugar transporter ERD6-like 16 OS=Arabidopsis thaliana GN=At5g18840 PE=2 SV=2

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 51/71 (71%)

Query: 1   MKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGR 60
           +KG+AGSLV+ ++    W +++TF+F+M WS  GTF ++    AA + FV  +VPETKG+
Sbjct: 410 VKGIAGSLVVLVNWSGAWAVSYTFNFLMSWSSPGTFYLYSAFAAATIIFVAKMVPETKGK 469

Query: 61  TLEEIQASITK 71
           TLEEIQA I +
Sbjct: 470 TLEEIQACIRR 480

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|O04036|ERD6_ARATH Sugar transporter ERD6 OS=Arabidopsis thaliana GN=ERD6 PE=1 SV=3

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 47/63 (74%)

Query: 5   AGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEE 64
           AG+LV   +    W IT+TF+FM+EW+ +G F IF ++ A+ + F+ FLVPETKGR+LEE
Sbjct: 427 AGTLVTVTNWLFGWIITYTFNFMLEWNASGMFLIFSMVSASSIVFIYFLVPETKGRSLEE 486

Query: 65  IQA 67
           IQA
Sbjct: 487 IQA 489

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WQ63|ERDL8_ARATH Sugar transporter ERD6-like 8 OS=Arabidopsis thaliana GN=At3g05150 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/67 (50%), Positives = 47/67 (70%)

Query: 1   MKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGR 60
           +KG AG LV  ++   +W ++FTF+F+M WS  GTF ++  +C   + F+  LVPETKGR
Sbjct: 401 LKGTAGGLVTVVNWLSSWLVSFTFNFLMIWSPHGTFYVYGGVCVLAIIFIAKLVPETKGR 460

Query: 61  TLEEIQA 67
           TLEEIQA
Sbjct: 461 TLEEIQA 467

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LTP6|EDL13_ARATH Putative sugar transporter ERD6-like 13 OS=Arabidopsis thaliana GN=At3g20460 PE=3 SV=2

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 50/71 (70%)

Query: 1   MKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGR 60
           +KG AG+L        NW +++TF+F+ +WS +G F I+ +I   G+ FV  +VPET+GR
Sbjct: 418 IKGSAGTLCNLTSWSSNWFVSYTFNFLFQWSSSGVFFIYTMISGVGILFVMKMVPETRGR 477

Query: 61  TLEEIQASITK 71
           +LEEIQA+IT+
Sbjct: 478 SLEEIQAAITR 488

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q4F7G0|ERDL2_ARATH Sugar transporter ERD6-like 2 OS=Arabidopsis thaliana GN=SUGTL3 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/69 (50%), Positives = 48/69 (69%)

Query: 5   AGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEE 64
           AGSLV   +   NW I ++F+FM++WS +GT+ IF  +    + F+  LVPETKGRTLEE
Sbjct: 394 AGSLVTMSNWFFNWIIIYSFNFMIQWSASGTYFIFSGVSLVTIVFIWTLVPETKGRTLEE 453

Query: 65  IQASITKLS 73
           IQ S+ +LS
Sbjct: 454 IQTSLVRLS 462

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93YP9|ERDL4_ARATH Sugar transporter ERD6-like 4 OS=Arabidopsis thaliana GN=At1g19450 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/67 (46%), Positives = 48/67 (71%)

Query: 1   MKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGR 60
           +KGLAGS+   ++  ++W +T T + ++ WS  GTF+++ ++C   V FV+  VPETKG+
Sbjct: 419 IKGLAGSIATLLNWFVSWLVTMTANMLLAWSSGGTFTLYALVCGFTVVFVSLWVPETKGK 478

Query: 61  TLEEIQA 67
           TLEEIQA
Sbjct: 479 TLEEIQA 485

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FRL3|ERDL6_ARATH Sugar transporter ERD6-like 6 OS=Arabidopsis thaliana GN=At1g75220 PE=1 SV=1

 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 47/67 (70%)

Query: 1   MKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGR 60
           +KGLAGS+    +   +W IT T + ++ WS  GTF+++ ++CA  V FVT  VPETKG+
Sbjct: 418 IKGLAGSIATLANWFFSWLITMTANLLLAWSSGGTFTLYGLVCAFTVVFVTLWVPETKGK 477

Query: 61  TLEEIQA 67
           TLEE+Q+
Sbjct: 478 TLEELQS 484

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXK5|EDL14_ARATH Sugar transporter ERD6-like 14 OS=Arabidopsis thaliana GN=At4g04750 PE=2 SV=2

 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 48/71 (67%)

Query: 1   MKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGR 60
           +KG AG++   +    +W +T++F+F+++WS TGTF +F  +   G  F   LVPETKG+
Sbjct: 403 VKGAAGTVCNLVTSISSWLVTYSFNFLLQWSSTGTFMMFATVMGLGFVFTAKLVPETKGK 462

Query: 61  TLEEIQASITK 71
           +LEEIQ++ T 
Sbjct: 463 SLEEIQSAFTD 473

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	75
298205019	874	unnamed protein product [Vitis vinifera]	0.933	0.080	0.557	1e-15
359487967	1179	PREDICTED: uncharacterized protein LOC10	0.933	0.059	0.557	2e-15
310877874	473	putative ERD6-like transporter [Vitis vi	0.933	0.147	0.557	2e-15
255542516	476	sugar transporter, putative [Ricinus com	0.933	0.147	0.571	3e-15
225451069	488	PREDICTED: putative ERD6-like transporte	1.0	0.153	0.573	4e-15
298205031	517	unnamed protein product [Vitis vinifera]	1.0	0.145	0.573	4e-15
224125374	442	predicted protein [Populus trichocarpa]	0.986	0.167	0.567	8e-15
298205021	490	unnamed protein product [Vitis vinifera]	0.933	0.142	0.614	2e-14
255542520	488	sugar transporter, putative [Ricinus com	0.973	0.149	0.575	2e-14
3776581	483	Similar to Beta integral membrane protei	0.92	0.142	0.579	3e-14

>gi|298205019|emb|CBI34326.3| unnamed protein product [Vitis vinifera]

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 39/70 (55%), Positives = 52/70 (74%)

Query: 1   MKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGR 60
           +KG AGSLV  ++ C +W +++TF+F+M WS  GTF  +  +CAA V F+  LVPETKGR
Sbjct: 805 IKGTAGSLVTLVNWCGSWAVSYTFNFLMNWSSHGTFFGYAFVCAAAVVFIVMLVPETKGR 864

Query: 61  TLEEIQASIT 70
           TLEEIQAS+ 
Sbjct: 865 TLEEIQASMN 874

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487967|ref|XP_002263811.2| PREDICTED: uncharacterized protein LOC100264207 [Vitis vinifera]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/70 (55%), Positives = 52/70 (74%)

Query: 1   MKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGR 60
           +KG AGSLV  ++ C +W +++TF+F+M WS  GTF  +  +CAA V F+  LVPETKGR
Sbjct: 402 IKGTAGSLVTLVNWCGSWAVSYTFNFLMNWSSHGTFFGYAFVCAAAVVFIVMLVPETKGR 461

Query: 61  TLEEIQASIT 70
           TLEEIQAS+ 
Sbjct: 462 TLEEIQASMN 471

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|310877874|gb|ADP37168.1| putative ERD6-like transporter [Vitis vinifera]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/70 (55%), Positives = 52/70 (74%)

Query: 1   MKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGR 60
           +KG AGSLV  ++ C +W +++TF+F+M WS  GTF  +  +CAA V F+  LVPETKGR
Sbjct: 404 IKGTAGSLVTLVNWCGSWAVSYTFNFLMNWSSHGTFFGYAFVCAAAVVFIVMLVPETKGR 463

Query: 61  TLEEIQASIT 70
           TLEEIQAS+ 
Sbjct: 464 TLEEIQASMN 473

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542516|ref|XP_002512321.1| sugar transporter, putative [Ricinus communis] gi|223548282|gb|EEF49773.1| sugar transporter, putative [Ricinus communis]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 54/70 (77%)

Query: 1   MKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGR 60
           +KG+AGSLVI I+   +W +++TF+FMMEWS +GTF I+  +CA  V F+  +VPETKGR
Sbjct: 403 IKGVAGSLVIAINWTCSWVVSYTFNFMMEWSSSGTFFIYAGVCALAVLFIAKVVPETKGR 462

Query: 61  TLEEIQASIT 70
            LEE+QASI 
Sbjct: 463 MLEELQASIA 472

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451069|ref|XP_002263418.1| PREDICTED: putative ERD6-like transporter [Vitis vinifera] gi|310877850|gb|ADP37156.1| putative ERD6-like transporter [Vitis vinifera]

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 43/75 (57%), Positives = 52/75 (69%)

Query: 1   MKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGR 60
           MKG AGSLV  +    +W I++ F+F+M+WS  GTF IF  IC   V FV  LVPETKGR
Sbjct: 408 MKGSAGSLVTLVSWLGSWIISYAFNFLMKWSSAGTFFIFSSICGITVLFVAKLVPETKGR 467

Query: 61  TLEEIQASITKLSRR 75
           TLEEIQAS+  LS +
Sbjct: 468 TLEEIQASMNPLSAK 482

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298205031|emb|CBI34338.3| unnamed protein product [Vitis vinifera]

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 43/75 (57%), Positives = 52/75 (69%)

Query: 1   MKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGR 60
           MKG AGSLV  +    +W I++ F+F+M+WS  GTF IF  IC   V FV  LVPETKGR
Sbjct: 437 MKGSAGSLVTLVSWLGSWIISYAFNFLMKWSSAGTFFIFSSICGITVLFVAKLVPETKGR 496

Query: 61  TLEEIQASITKLSRR 75
           TLEEIQAS+  LS +
Sbjct: 497 TLEEIQASMNPLSAK 511

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125374|ref|XP_002319570.1| predicted protein [Populus trichocarpa] gi|222857946|gb|EEE95493.1| predicted protein [Populus trichocarpa]

 Score = 84.3 bits (207), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 42/74 (56%), Positives = 51/74 (68%)

Query: 2   KGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGRT 61
           KG AGSLV  +    +W I++ F+F+M+WS  GTF IF  IC   V FV  LVPETKGRT
Sbjct: 368 KGSAGSLVTLVSWLGSWIISYAFNFLMDWSSAGTFFIFSCICGLTVLFVAKLVPETKGRT 427

Query: 62  LEEIQASITKLSRR 75
           LEEIQAS+  LS +
Sbjct: 428 LEEIQASMNPLSAK 441

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298205021|emb|CBI34328.3| unnamed protein product [Vitis vinifera] gi|310877870|gb|ADP37166.1| putative ERD6-like transporter [Vitis vinifera]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/70 (61%), Positives = 50/70 (71%)

Query: 1   MKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGR 60
           +KG AGSLV F+    +W +  TF+F+ EWS  GTF IF  IC  GV F+  LVPETKGR
Sbjct: 417 IKGPAGSLVTFVCWFGSWLVACTFYFLFEWSSAGTFFIFSSICGLGVLFIAKLVPETKGR 476

Query: 61  TLEEIQASIT 70
           TLEEIQASIT
Sbjct: 477 TLEEIQASIT 486

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542520|ref|XP_002512323.1| sugar transporter, putative [Ricinus communis] gi|223548284|gb|EEF49775.1| sugar transporter, putative [Ricinus communis]

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/73 (57%), Positives = 50/73 (68%)

Query: 1   MKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGR 60
           MKG AGSLV  +    +W I++ F+F+M WS  GTF IF  IC   V FV  LVPETKGR
Sbjct: 413 MKGSAGSLVTLVSWLGSWIISYAFNFLMTWSSAGTFLIFSSICGLTVLFVAKLVPETKGR 472

Query: 61  TLEEIQASITKLS 73
           TLEEIQAS+  +S
Sbjct: 473 TLEEIQASMNPVS 485

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3776581|gb|AAC64898.1| Similar to Beta integral membrane protein homolog gb|U43629 from A. thaliana [Arabidopsis thaliana]

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/69 (57%), Positives = 49/69 (71%)

Query: 1   MKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGR 60
           +KG AGSLV  +    +W I+FTF+F+M W+  GTF +F  +C A V FV  LVPETKGR
Sbjct: 410 IKGSAGSLVTVVSWVGSWIISFTFNFLMNWNPAGTFYVFATVCGATVIFVAKLVPETKGR 469

Query: 61  TLEEIQASI 69
           TLEEIQ SI
Sbjct: 470 TLEEIQYSI 478

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	75
TAIR|locus:2199539	470	AT1G54730 [Arabidopsis thalian	0.92	0.146	0.579	1.3e-15
TAIR|locus:2144975	482	AT5G18840 "AT5G18840" [Arabido	0.946	0.147	0.492	1e-14
TAIR|locus:2096219	470	AT3G05150 [Arabidopsis thalian	0.893	0.142	0.507	3.4e-14
TAIR|locus:2036084	496	ERD6 "EARLY RESPONSE TO DEHYDR	0.893	0.135	0.522	6.4e-14
TAIR|locus:2036009	462	AT1G08900 [Arabidopsis thalian	0.973	0.158	0.493	1.5e-13
TAIR|locus:2092379	488	AT3G20460 [Arabidopsis thalian	0.946	0.145	0.464	2.1e-13
TAIR|locus:2016407	488	AT1G19450 [Arabidopsis thalian	0.893	0.137	0.462	4.6e-13
TAIR|locus:2025132	487	ERDL6 "ERD6-like 6" [Arabidops	0.893	0.137	0.477	5.8e-13
TAIR|locus:2138927	482	AT4G04750 [Arabidopsis thalian	0.933	0.145	0.428	1.2e-12
TAIR|locus:2066400	463	AT2G48020 [Arabidopsis thalian	0.92	0.149	0.449	2.3e-12

TAIR|locus:2199539 AT1G54730 [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 40/69 (57%), Positives = 49/69 (71%)

Query:     1 MKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGR 60
             +KG AGSLV  +    +W I+FTF+F+M W+  GTF +F  +C A V FV  LVPETKGR
Sbjct:   397 IKGSAGSLVTVVSWVGSWIISFTFNFLMNWNPAGTFYVFATVCGATVIFVAKLVPETKGR 456

Query:    61 TLEEIQASI 69
             TLEEIQ SI
Sbjct:   457 TLEEIQYSI 465

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2144975 AT5G18840 "AT5G18840" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 1.0e-14, P = 1.0e-14
 Identities = 35/71 (49%), Positives = 51/71 (71%)

Query:     1 MKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGR 60
             +KG+AGSLV+ ++    W +++TF+F+M WS  GTF ++    AA + FV  +VPETKG+
Sbjct:   410 VKGIAGSLVVLVNWSGAWAVSYTFNFLMSWSSPGTFYLYSAFAAATIIFVAKMVPETKGK 469

Query:    61 TLEEIQASITK 71
             TLEEIQA I +
Sbjct:   470 TLEEIQACIRR 480

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2096219 AT3G05150 [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 3.4e-14, P = 3.4e-14
 Identities = 34/67 (50%), Positives = 47/67 (70%)

Query:     1 MKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGR 60
             +KG AG LV  ++   +W ++FTF+F+M WS  GTF ++  +C   + F+  LVPETKGR
Sbjct:   401 LKGTAGGLVTVVNWLSSWLVSFTFNFLMIWSPHGTFYVYGGVCVLAIIFIAKLVPETKGR 460

Query:    61 TLEEIQA 67
             TLEEIQA
Sbjct:   461 TLEEIQA 467

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

TAIR|locus:2036084 ERD6 "EARLY RESPONSE TO DEHYDRATION 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 6.4e-14, P = 6.4e-14
 Identities = 35/67 (52%), Positives = 49/67 (73%)

Query:     1 MKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGR 60
             +K  AG+LV   +    W IT+TF+FM+EW+ +G F IF ++ A+ + F+ FLVPETKGR
Sbjct:   423 VKVSAGTLVTVTNWLFGWIITYTFNFMLEWNASGMFLIFSMVSASSIVFIYFLVPETKGR 482

Query:    61 TLEEIQA 67
             +LEEIQA
Sbjct:   483 SLEEIQA 489

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0051119 "sugar transmembrane transporter activity" evidence=ISS

TAIR|locus:2036009 AT1G08900 [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 1.5e-13, P = 1.5e-13
 Identities = 36/73 (49%), Positives = 50/73 (68%)

Query:     1 MKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGR 60
             +K  AGSLV   +   NW I ++F+FM++WS +GT+ IF  +    + F+  LVPETKGR
Sbjct:   390 VKITAGSLVTMSNWFFNWIIIYSFNFMIQWSASGTYFIFSGVSLVTIVFIWTLVPETKGR 449

Query:    61 TLEEIQASITKLS 73
             TLEEIQ S+ +LS
Sbjct:   450 TLEEIQTSLVRLS 462

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2092379 AT3G20460 [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 33/71 (46%), Positives = 50/71 (70%)

Query:     1 MKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGR 60
             +KG AG+L        NW +++TF+F+ +WS +G F I+ +I   G+ FV  +VPET+GR
Sbjct:   418 IKGSAGTLCNLTSWSSNWFVSYTFNFLFQWSSSGVFFIYTMISGVGILFVMKMVPETRGR 477

Query:    61 TLEEIQASITK 71
             +LEEIQA+IT+
Sbjct:   478 SLEEIQAAITR 488

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2016407 AT1G19450 [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 4.6e-13, P = 4.6e-13
 Identities = 31/67 (46%), Positives = 48/67 (71%)

Query:     1 MKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGR 60
             +KGLAGS+   ++  ++W +T T + ++ WS  GTF+++ ++C   V FV+  VPETKG+
Sbjct:   419 IKGLAGSIATLLNWFVSWLVTMTANMLLAWSSGGTFTLYALVCGFTVVFVSLWVPETKGK 478

Query:    61 TLEEIQA 67
             TLEEIQA
Sbjct:   479 TLEEIQA 485

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2025132 ERDL6 "ERD6-like 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 5.8e-13, P = 5.8e-13
 Identities = 32/67 (47%), Positives = 47/67 (70%)

Query:     1 MKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGR 60
             +KGLAGS+    +   +W IT T + ++ WS  GTF+++ ++CA  V FVT  VPETKG+
Sbjct:   418 IKGLAGSIATLANWFFSWLITMTANLLLAWSSGGTFTLYGLVCAFTVVFVTLWVPETKGK 477

Query:    61 TLEEIQA 67
             TLEE+Q+
Sbjct:   478 TLEELQS 484

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0010030 "positive regulation of seed germination" evidence=IMP

GO:0042593 "glucose homeostasis" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

TAIR|locus:2138927 AT4G04750 [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 30/70 (42%), Positives = 48/70 (68%)

Query:     1 MKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGR 60
             +KG AG++   +    +W +T++F+F+++WS TGTF +F  +   G  F   LVPETKG+
Sbjct:   403 VKGAAGTVCNLVTSISSWLVTYSFNFLLQWSSTGTFMMFATVMGLGFVFTAKLVPETKGK 462

Query:    61 TLEEIQASIT 70
             +LEEIQ++ T
Sbjct:   463 SLEEIQSAFT 472

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2066400 AT2G48020 [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 2.3e-12, P = 2.3e-12
 Identities = 31/69 (44%), Positives = 47/69 (68%)

Query:     1 MKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGR 60
             +KG+AG +   ++    W +++TF+F+M WS  GTF I+  I A  + FV  +VPETKG+
Sbjct:   393 IKGVAGGMATLVNWFGAWAVSYTFNFLMSWSSYGTFLIYAAINALAIVFVIAIVPETKGK 452

Query:    61 TLEEIQASI 69
             TLE+IQA +
Sbjct:   453 TLEQIQAIV 461

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	75
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	1e-07
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	3e-07
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	7e-05
TIGR00887	502	TIGR00887, 2A0109, phosphate:H+ symporter	8e-04

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 46.2 bits (110), Expect = 1e-07
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 2   KGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFW-VICAAGVAFVTFLVPETKGR 60
           +    S+ +  +   N+ + F F  M+E    G   IF+  +   G+ FV F +PETKGR
Sbjct: 417 RPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGR 476

Query: 61  TLEEI 65
           TLEEI
Sbjct: 477 TLEEI 481

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 45.4 bits (108), Expect = 3e-07
 Identities = 22/66 (33%), Positives = 31/66 (46%)

Query: 2   KGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGRT 61
           +  A ++    +   N+ I F F  +        F +F  +    + FV F VPETKGRT
Sbjct: 382 RPKAMAIATAANWLANFLIGFLFPIITGAIGGYVFLVFAGLLVLFILFVFFFVPETKGRT 441

Query: 62  LEEIQA 67
           LEEI  
Sbjct: 442 LEEIDE 447

Length = 449

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score = 38.5 bits (90), Expect = 7e-05
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 7/65 (10%)

Query: 17  NWTITFTFHFMMEWSKTG-------TFSIFWVICAAGVAFVTFLVPETKGRTLEEIQASI 69
           N+ +++TF  M + S          ++ I+  +      F+   VPETKG+TLEE++A  
Sbjct: 413 NYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALW 472

Query: 70  TKLSR 74
              ++
Sbjct: 473 EPETK 477

Length = 479

>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter

 Score = 35.5 bits (82), Expect = 8e-04
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)

Query: 38  IFWVICAAGVAFVTFLVPETKGRTLEEI 65
           IF +    G+ F T L+PETKG++LEE+
Sbjct: 473 IFALFMFLGILF-TLLIPETKGKSLEEL 499

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	75
KOG0569	485	consensus Permease of the major facilitator superf	99.68
KOG0254	513	consensus Predicted transporter (major facilitator	99.34
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.31
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.21
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.14
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.61
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.32
TIGR00898	505	2A0119 cation transport protein.	98.27
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.27
PRK10489	417	enterobactin exporter EntS; Provisional	98.21
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.2
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.79
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	97.49
PRK10642	490	proline/glycine betaine transporter; Provisional	97.39
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	97.13
PRK11663	434	regulatory protein UhpC; Provisional	97.1
TIGR00893	399	2A0114 d-galactonate transporter.	96.94
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	96.92
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	96.92
PRK03545	390	putative arabinose transporter; Provisional	96.9
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	96.8
PRK10473	392	multidrug efflux system protein MdtL; Provisional	96.74
PRK09705	393	cynX putative cyanate transporter; Provisional	96.68
PRK15403	413	multidrug efflux system protein MdtM; Provisional	96.61
PRK14995	495	methyl viologen resistance protein SmvA; Provision	96.61
PRK10091	382	MFS transport protein AraJ; Provisional	96.57
TIGR00895	398	2A0115 benzoate transport.	96.57
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	96.44
PRK09874	408	drug efflux system protein MdtG; Provisional	96.39
PRK10213	394	nepI ribonucleoside transporter; Reviewed	96.36
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	96.25
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	96.2
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	96.17
PRK10054	395	putative transporter; Provisional	96.17
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	96.05
PRK11663	434	regulatory protein UhpC; Provisional	95.99
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	95.98
PLN00028	476	nitrate transmembrane transporter; Provisional	95.9
TIGR00901	356	2A0125 AmpG-related permease.	95.81
KOG2816	463	consensus Predicted transporter ADD1 (major facili	95.71
PRK11646	400	multidrug resistance protein MdtH; Provisional	95.51
PRK03545	390	putative arabinose transporter; Provisional	95.5
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	95.46
PRK05122	399	major facilitator superfamily transporter; Provisi	95.42
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	95.41
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	95.41
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	95.38
KOG2532	466	consensus Permease of the major facilitator superf	95.32
TIGR00891	405	2A0112 putative sialic acid transporter.	95.2
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	95.19
TIGR00897	402	2A0118 polyol permease family. This family of prot	95.17
TIGR00900	365	2A0121 H+ Antiporter protein.	95.14
PRK11652	394	emrD multidrug resistance protein D; Provisional	95.14
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	95.1
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	95.02
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	94.98
TIGR00893	399	2A0114 d-galactonate transporter.	94.97
PRK10406	432	alpha-ketoglutarate transporter; Provisional	94.94
PRK12382	392	putative transporter; Provisional	94.94
PRK12307	426	putative sialic acid transporter; Provisional	94.52
PRK15011	393	sugar efflux transporter B; Provisional	94.52
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	94.51
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	94.36
TIGR00892	455	2A0113 monocarboxylate transporter 1.	94.32
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	94.27
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	94.17
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	94.16
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	93.93
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	93.92
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	93.76
PRK12307	426	putative sialic acid transporter; Provisional	93.56
PRK11043	401	putative transporter; Provisional	93.45
PRK09952	438	shikimate transporter; Provisional	93.28
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	93.25
PRK09528	420	lacY galactoside permease; Reviewed	93.18
PRK09874	408	drug efflux system protein MdtG; Provisional	93.12
PRK03893	496	putative sialic acid transporter; Provisional	93.08
PTZ00207	591	hypothetical protein; Provisional	92.98
PRK11010	491	ampG muropeptide transporter; Validated	92.92
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	92.83
PF13347	428	MFS_2: MFS/sugar transport protein	92.8
PRK03893	496	putative sialic acid transporter; Provisional	92.58
PRK09528	420	lacY galactoside permease; Reviewed	92.53
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	92.43
PRK15011	393	sugar efflux transporter B; Provisional	92.38
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	92.38
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	92.33
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	92.33
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	92.27
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	92.21
PRK10504	471	putative transporter; Provisional	92.18
KOG2533	495	consensus Permease of the major facilitator superf	92.01
TIGR00898	505	2A0119 cation transport protein.	91.95
COG2211	467	MelB Na+/melibiose symporter and related transport	91.65
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	91.64
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	91.59
TIGR00892	455	2A0113 monocarboxylate transporter 1.	91.51
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	91.35
PRK15462	493	dipeptide/tripeptide permease D; Provisional	91.17
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	90.79
PRK15075	434	citrate-proton symporter; Provisional	90.58
PRK11462	460	putative transporter; Provisional	90.37
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	90.18
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	89.92
PRK10489	417	enterobactin exporter EntS; Provisional	89.9
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	89.76
TIGR00896	355	CynX cyanate transporter. This family of proteins	89.75
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	89.67
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	89.58
KOG3764	464	consensus Vesicular amine transporter [Intracellul	89.23
KOG0569	485	consensus Permease of the major facilitator superf	89.19
PRK11010	491	ampG muropeptide transporter; Validated	89.15
PRK10077	479	xylE D-xylose transporter XylE; Provisional	89.13
PRK03699	394	putative transporter; Provisional	89.02
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	88.86
PRK11195	393	lysophospholipid transporter LplT; Provisional	88.81
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	88.23
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	87.56
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	87.2
PRK15403	413	multidrug efflux system protein MdtM; Provisional	86.82
PRK09848	448	glucuronide transporter; Provisional	86.58
TIGR00897	402	2A0118 polyol permease family. This family of prot	85.98
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	85.5
TIGR00805	633	oat sodium-independent organic anion transporter.	85.2
PRK09584	500	tppB putative tripeptide transporter permease; Rev	85.15
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	85.12
PRK10207	489	dipeptide/tripeptide permease B; Provisional	85.12
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	85.09
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	83.57
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	82.79
PRK11902	402	ampG muropeptide transporter; Reviewed	82.74
TIGR00788	468	fbt folate/biopterin transporter. The only functio	81.96
PLN00028	476	nitrate transmembrane transporter; Provisional	81.56
PRK03699	394	putative transporter; Provisional	81.09
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	80.4
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	80.37
PF10183	105	ESSS: ESSS subunit of NADH:ubiquinone oxidoreducta	80.02

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.68  E-value=3.4e-16  Score=99.92  Aligned_cols=71  Identities=25%  Similarity=0.303  Sum_probs=66.1

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhhc
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEEIQASITKL   72 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~pet~~~~~~~~~~~~~~~   72 (75)
                      |+.+++++.+.||++++++.++||++.+..+.+.|++|.+.+++..+++|+++||||||+..|+.++++++
T Consensus       402 R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~  472 (485)
T KOG0569|consen  402 RSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR  472 (485)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence            89999999999999999999999999993334899999999999999999999999999999999998765

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.34  E-value=6.6e-12  Score=80.55  Aligned_cols=72  Identities=39%  Similarity=0.579  Sum_probs=63.6

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHH-HHHHhccCCCCCCHHHHHHHHhhc
Q 035031            1 MKGLAGSLVIFIHHCINWTITFTFHFMMEWSK-TGTFSIFWVICAAGVA-FVTFLVPETKGRTLEEIQASITKL   72 (75)
Q Consensus         1 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~f~~~~~~~~~-~~~~~~pet~~~~~~~~~~~~~~~   72 (75)
                      +|+++.+++..+||..++++.+.++.+.+... ...|++|++.+.+... ++++++|||||+++||+++.++++
T Consensus       428 ~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~~  501 (513)
T KOG0254|consen  428 LRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEEG  501 (513)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHcC
Confidence            58999999999999999999999999988443 6788888888888888 899999999999999999888655

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.31  E-value=7.5e-14  Score=87.41  Aligned_cols=69  Identities=33%  Similarity=0.569  Sum_probs=63.3

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHH
Q 035031            1 MKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEEIQASI   69 (75)
Q Consensus         1 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~~~~~~~~~~~   69 (75)
                      +|+++.+++...+|+++++.++++|++.+ .+....++++++++.+..+++++++|||||++++|++++|
T Consensus       382 ~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~f  451 (451)
T PF00083_consen  382 VRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEMF  451 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhhC
Confidence            58999999999999999999999999988 4557889999999999999999999999999999999875

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.21  E-value=3.7e-11  Score=76.80  Aligned_cols=66  Identities=26%  Similarity=0.375  Sum_probs=55.5

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHH-h----------cchHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHH
Q 035031            1 MKGLAGSLVIFIHHCINWTITFTFHFMME-W----------SKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEEIQA   67 (75)
Q Consensus         1 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~~~f~~~~~~~~~~~~~~~pet~~~~~~~~~~   67 (75)
                      +|+++++++...+|+++++.++++|++.+ .          +....++++++.++++.++ ++++|||||+++||+|+
T Consensus       425 ~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~-~~~lpEt~~~~leei~~  501 (502)
T TIGR00887       425 YRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF-TLLIPETKGKSLEELSG  501 (502)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH-heEeccCCCCCHHhhhC
Confidence            48999999999999999999999999987 2          1245788888888877665 46789999999999875

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.14  E-value=6e-10  Score=70.32  Aligned_cols=74  Identities=26%  Similarity=0.411  Sum_probs=63.2

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHH------H-hcchHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhhcc
Q 035031            1 MKGLAGSLVIFIHHCINWTITFTFHFMM------E-WSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEEIQASITKLS   73 (75)
Q Consensus         1 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~~~~~~~~~~~~~~~   73 (75)
                      .|+++++++...+++++++.++++|.+.      + .+....|+++++.+++..+..+++.||||+++++|+++.++++.
T Consensus       397 ~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~  476 (479)
T PRK10077        397 IRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWEPET  476 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhhcc
Confidence            3889999999999999999999999766      2 44567788888888888888888899999999999999887764


Q ss_pred             C
Q 035031           74 R   74 (75)
Q Consensus        74 ~   74 (75)
                      +
T Consensus       477 ~  477 (479)
T PRK10077        477 K  477 (479)
T ss_pred             c
Confidence            3

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.61  E-value=5.6e-08  Score=62.61  Aligned_cols=68  Identities=24%  Similarity=0.338  Sum_probs=58.4

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHH------hcchHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHH
Q 035031            1 MKGLAGSLVIFIHHCINWTITFTFHFMME------WSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEEIQASI   69 (75)
Q Consensus         1 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~f~~~~~~~~~~~~~~~pet~~~~~~~~~~~~   69 (75)
                      +|+.+.+++.+++.+++.+..+.|.++.+      .+..++++++++++.++.++.+ ++||||++++||++++.
T Consensus       439 vR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~-l~pEtk~~~leei~~e~  512 (538)
T KOG0252|consen  439 VRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTL-LIPETKGKSLEEISNEE  512 (538)
T ss_pred             HhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeE-EeecccccCHHHhcChh
Confidence            59999999999999999999999999987      2446889999999988866655 58899999999986554

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.32  E-value=1.8e-06  Score=53.74  Aligned_cols=63  Identities=37%  Similarity=0.551  Sum_probs=55.0

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCCCCHHH
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEE   64 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~~~~~~   64 (75)
                      |++++++.....++++++.+.+.+.+.+ .+..+.|++++++++++.+..+++.||+|+++.+|
T Consensus       417 ~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~  480 (481)
T TIGR00879       417 RPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEE  480 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChhh
Confidence            7889999999999999999999998887 56667788888888888888888899999988765

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00898 2A0119 cation transport protein

Probab=98.27  E-value=2.8e-06  Score=54.29  Aligned_cols=62  Identities=18%  Similarity=0.148  Sum_probs=50.0

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccCCCCCCHHH
Q 035031            1 MKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEE   64 (75)
Q Consensus         1 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~pet~~~~~~~   64 (75)
                      +|++++|++...+++++.+.+++.. +.+.+....++++++..+++.+.. +++|||++++++|
T Consensus       443 ~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~lpet~~~~l~~  504 (505)
T TIGR00898       443 VRNLGVGVCSTMARVGSIISPFLVY-LGEKWLFLPLVLFGGLALLAGILT-LFLPETKGVPLPE  504 (505)
T ss_pred             HHhhhHhHHHHHHHHHHHHHhHHHH-HHHHHHhhHHHHHHHHHHHHHHHH-HcCcCCCCCCCCC
Confidence            4889999999999999999999888 444555677888888877776654 4689999998765

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.27  E-value=1.1e-06  Score=56.06  Aligned_cols=61  Identities=16%  Similarity=0.087  Sum_probs=53.1

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccCCCCCCH
Q 035031            1 MKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGRTL   62 (75)
Q Consensus         1 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~pet~~~~~   62 (75)
                      +|+.|.|.|++++++++.+.+++. .+.+...+.+.++|++..+++.+.+.++..|||||++
T Consensus       467 vRatgvGtcSsmaRIggI~~p~iA-~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l  527 (528)
T KOG0253|consen  467 VRATGVGTCSSMARIGGIFSPVIA-MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL  527 (528)
T ss_pred             hhhcchhhhhhHHhhhhhhhhHHH-HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence            699999999999999999999998 3333556678889999999999999999999999974

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.21  E-value=3.7e-06  Score=52.67  Aligned_cols=68  Identities=6%  Similarity=-0.190  Sum_probs=58.4

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHH
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEEIQASI   69 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~~~~~~~~~~~   69 (75)
                      |+++.|+....+.++..+.+.+...+.+ .+....++.+++...+..+..+..+||+|+++.+|++++-
T Consensus       346 ~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (417)
T PRK10489        346 LGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVDA  414 (417)
T ss_pred             HHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccccCCC
Confidence            7889999999999999999999999998 6667778888888777777788889999999999987553

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.20  E-value=1e-05  Score=54.82  Aligned_cols=61  Identities=15%  Similarity=0.140  Sum_probs=49.2

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccCCCCCCH
Q 035031            1 MKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGRTL   62 (75)
Q Consensus         1 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~pet~~~~~   62 (75)
                      .|++++|++...+++++++.+++.+.+.+.....+++++++..+++.+..+ ++|||+++.+
T Consensus       681 ~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~-~LPET~~~~l  741 (742)
T TIGR01299       681 KRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLAL-KLPDTRGQVL  741 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-hCCCCccccc
Confidence            489999999999999999999999888775455677777777777655555 5799999864

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.79  E-value=0.0002  Score=46.30  Aligned_cols=70  Identities=13%  Similarity=0.034  Sum_probs=52.0

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHh
Q 035031            1 MKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEEIQASIT   70 (75)
Q Consensus         1 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~pet~~~~~~~~~~~~~   70 (75)
                      +|+.+.+.+...+++.+.+.+++............+.+++....+....+..++|||+++++.+..++-+
T Consensus       439 ~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~~~~~  508 (521)
T KOG0255|consen  439 VRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGTLLDAE  508 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhcCcccCCCCCchhHHHHH
Confidence            4889999999999999999988876555422223333367777777777778899999999877554444

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=97.49  E-value=0.0014  Score=34.40  Aligned_cols=56  Identities=18%  Similarity=0.131  Sum_probs=45.1

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPET   57 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet   57 (75)
                      |+++.++....+.++..+.+.+.+.+.+ .+..+.+++.+....+..+..++..|||
T Consensus        85 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (141)
T TIGR00880        85 RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET  141 (141)
T ss_pred             hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            7888999999999999999998888877 4445677777777777777777777775

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=97.39  E-value=0.001  Score=42.93  Aligned_cols=61  Identities=15%  Similarity=0.053  Sum_probs=41.6

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHH-hc-chHHHHHHHHHHHHHHHHHHHhccCCCCCCH
Q 035031            1 MKGLAGSLVIFIHHCINWTITFTFHFMME-WS-KTGTFSIFWVICAAGVAFVTFLVPETKGRTL   62 (75)
Q Consensus         1 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~f~~~~~~~~~~~~~~~pet~~~~~   62 (75)
                      +|+++++++....++.+.+.+++..++.+ .+ ....+++..+..++..+. .+++|||+++..
T Consensus       375 ~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~-~~~~pes~~~~~  437 (490)
T PRK10642        375 IRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLIT-GVTMKETANRPL  437 (490)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH-HHHhccccCCCC
Confidence            48888998888888888888998888876 33 233444444445544444 446799987654

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=97.13  E-value=0.0053  Score=39.18  Aligned_cols=59  Identities=10%  Similarity=0.130  Sum_probs=43.0

Q ss_pred             cchhHHHHHHHHHHHHHH-HHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHH-hccCCCCC
Q 035031            2 KGLAGSLVIFIHHCINWT-ITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTF-LVPETKGR   60 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~-~~pet~~~   60 (75)
                      |+++.|+.....++++.+ .+.+...+.+ .+....|++.++.++++.+.... ..+|+|++
T Consensus       381 ~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  442 (452)
T PRK11273        381 AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRHH  442 (452)
T ss_pred             hhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhccccchH
Confidence            678888888888888766 5888888888 66667787777777777776553 33665543

>PRK11663 regulatory protein UhpC; Provisional

Probab=97.10  E-value=0.0019  Score=40.96  Aligned_cols=59  Identities=15%  Similarity=0.199  Sum_probs=48.1

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGR   60 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~~   60 (75)
                      |++++++....+.++.++.+.++..+.+ .+....|...+++.++..+..+++.++.+++
T Consensus       371 ~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  430 (434)
T PRK11663        371 AGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAPR  430 (434)
T ss_pred             HHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence            6889999999999999999999999998 6666788888888777777666666665554

>TIGR00893 2A0114 d-galactonate transporter

Probab=96.94  E-value=0.0056  Score=37.23  Aligned_cols=58  Identities=12%  Similarity=-0.055  Sum_probs=43.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKG   59 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~   59 (75)
                      |++++++......++..+.+.+...+.+ .+..+.|++.++..++..+..++..||++.
T Consensus       116 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (399)
T TIGR00893       116 RATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQ  174 (399)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCC
Confidence            6778888888888888888888777666 555677777777777666666666777654

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=96.92  E-value=0.01  Score=36.48  Aligned_cols=60  Identities=13%  Similarity=0.082  Sum_probs=45.5

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGRT   61 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~~~   61 (75)
                      |+++.++......++..+.+.+...+.+ .+....+++.++..++..+..++..||++.+.
T Consensus       127 ~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (385)
T TIGR00710       127 LSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPYE  187 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc
Confidence            6778888888888888888888887776 55566777777777777777777788876543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=96.92  E-value=0.013  Score=36.78  Aligned_cols=57  Identities=16%  Similarity=-0.029  Sum_probs=47.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK   58 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~   58 (75)
                      |++++++....+.++..+.+.+.+.+.+ .+..+.|++.+++.++..+..++++||.+
T Consensus       112 r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p  169 (368)
T TIGR00903       112 RDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALP  169 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            7889999999999999999888888877 56567787778888888787888899864

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK03545 putative arabinose transporter; Provisional

Probab=96.90  E-value=0.02  Score=35.70  Aligned_cols=58  Identities=14%  Similarity=-0.146  Sum_probs=44.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKG   59 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~   59 (75)
                      |++++++....+.++..+.+.+...+.+ .+..+.|++.++..++..+..++.+||.+.
T Consensus       131 r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~  189 (390)
T PRK03545        131 KAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPS  189 (390)
T ss_pred             hhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            6788888888888888888887777766 566678888888877777776777777543

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=96.80  E-value=0.012  Score=36.21  Aligned_cols=57  Identities=18%  Similarity=0.196  Sum_probs=44.0

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK   58 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~   58 (75)
                      |++++++......++..+.+.+...+.+ .+..+.|++.+....+..+...+++||++
T Consensus       113 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (377)
T PRK11102        113 FSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETL  170 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence            6778888888888888888888777776 55557777777777777777777788864

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=96.74  E-value=0.013  Score=36.47  Aligned_cols=59  Identities=17%  Similarity=0.101  Sum_probs=41.5

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGR   60 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~~   60 (75)
                      |+++.++......++..+.+.+...+.+ .+..+.+++.++...+..+..++++||++..
T Consensus       125 r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  184 (392)
T PRK10473        125 RAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRPA  184 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence            6677777777777777666666665555 4445677777777777777777788887644

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=96.68  E-value=0.017  Score=36.26  Aligned_cols=61  Identities=7%  Similarity=-0.077  Sum_probs=46.1

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hc-chHHHHHHHHHHHHHHHHHHHhccCCCCCCH
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WS-KTGTFSIFWVICAAGVAFVTFLVPETKGRTL   62 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~f~~~~~~~~~~~~~~~pet~~~~~   62 (75)
                      |++..++......+...+.+.+...+.+ .+ ....+.+.++..++..+..+.+.|||+++..
T Consensus       327 ~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK09705        327 AGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQLW  389 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence            4677888888888888889999988888 44 3445555566666666677788899988754

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=96.61  E-value=0.029  Score=35.55  Aligned_cols=58  Identities=14%  Similarity=-0.024  Sum_probs=41.8

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKG   59 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~   59 (75)
                      |++++++......++..+.+.+-..+.+ .+..+.|++.++..++..+..++++||++.
T Consensus       138 ~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~  196 (413)
T PRK15403        138 GIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK  196 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence            4566777777777777777777666666 455678888888877777766777899864

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=96.61  E-value=0.0084  Score=38.83  Aligned_cols=59  Identities=15%  Similarity=0.075  Sum_probs=46.4

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGR   60 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~~   60 (75)
                      |++++++......++..+.+.+-..+.+ .+..+.|++...+.++..+..++++||.+++
T Consensus       129 r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~  188 (495)
T PRK14995        129 RNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGR  188 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            6788889999999999899988888877 5656788877777777777777788886543

>PRK10091 MFS transport protein AraJ; Provisional

Probab=96.57  E-value=0.026  Score=35.20  Aligned_cols=59  Identities=19%  Similarity=0.075  Sum_probs=38.2

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGR   60 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~~   60 (75)
                      |++++++......++..+.+.+...+.+ .+..+.|++.++...+..+..++++||.+.+
T Consensus       125 ~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~  184 (382)
T PRK10091        125 VTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRDE  184 (382)
T ss_pred             hhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCcc
Confidence            4556666666666666666655555555 4555777777777776666667778986543

>TIGR00895 2A0115 benzoate transport

Probab=96.57  E-value=0.01  Score=36.36  Aligned_cols=58  Identities=12%  Similarity=0.041  Sum_probs=43.9

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKG   59 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~   59 (75)
                      |++++++......++..+.+.+.+.+.+ .+....+++.++...+.....++++||+..
T Consensus       139 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (398)
T TIGR00895       139 RGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESID  197 (398)
T ss_pred             hchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCCh
Confidence            7888999999999999999888888777 454556666666666666667777888743

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=96.44  E-value=0.0092  Score=37.93  Aligned_cols=57  Identities=11%  Similarity=0.102  Sum_probs=46.5

Q ss_pred             cchhHHHHHHHHHHHH-HHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031            2 KGLAGSLVIFIHHCIN-WTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK   58 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~   58 (75)
                      |+++.|+....++.++ .+.+.+...+.+ .+....+.+..+..+++.+..++.+||-|
T Consensus       379 ~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (438)
T TIGR00712       379 AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK  437 (438)
T ss_pred             eeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            6788888888888775 567888998888 56677888888888888888888899865

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=96.39  E-value=0.071  Score=33.17  Aligned_cols=57  Identities=11%  Similarity=-0.062  Sum_probs=41.1

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK   58 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~   58 (75)
                      |+++.++......++..+.+.+...+.+ .+..+.+++.++..++..+..++++||..
T Consensus       140 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (408)
T PRK09874        140 SGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENF  197 (408)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence            5677777777777777777777777766 55566777777777777777777777753

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=96.36  E-value=0.052  Score=34.20  Aligned_cols=58  Identities=14%  Similarity=-0.016  Sum_probs=42.2

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKG   59 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~   59 (75)
                      |+++.++......++..+.+.+.+.+.+ .+..+.|++.+...++..+......||+++
T Consensus       142 ~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~  200 (394)
T PRK10213        142 VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPG  200 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCc
Confidence            5677888888778888888888888777 565677777776666655556666788654

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=96.25  E-value=0.088  Score=33.39  Aligned_cols=58  Identities=7%  Similarity=-0.066  Sum_probs=41.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-------hcchHHHHHHHHHHHHHHHHHHHhccCCCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-------WSKTGTFSIFWVICAAGVAFVTFLVPETKG   59 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~f~~~~~~~~~~~~~~~pet~~   59 (75)
                      |++++++......++..+.+.+...+.+       .+..+.|++.++..++.....++++||++.
T Consensus       130 rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~  194 (412)
T TIGR02332       130 RARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD  194 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence            6777888887777777777777666553       244577777777777766677778898864

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00889 2A0110 nucleoside transporter

Probab=96.20  E-value=0.036  Score=35.31  Aligned_cols=60  Identities=10%  Similarity=-0.048  Sum_probs=45.8

Q ss_pred             cchhHHHHH-HHHHHHHHHHHHHHHHHHH-hc------chHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 035031            2 KGLAGSLVI-FIHHCINWTITFTFHFMME-WS------KTGTFSIFWVICAAGVAFVTFLVPETKGRT   61 (75)
Q Consensus         2 R~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~f~~~~~~~~~~~~~~~pet~~~~   61 (75)
                      |++++++.. ..+.++..+.+.+...+.+ .+      ....|.+.++..++..+..++++||+++.-
T Consensus       342 ~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~~  409 (418)
T TIGR00889       342 RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNAI  409 (418)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccCC
Confidence            678888886 4566788888999998888 33      235677777788888888888899987653

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=96.17  E-value=0.058  Score=33.80  Aligned_cols=57  Identities=16%  Similarity=0.071  Sum_probs=37.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCC
Q 035031            3 GLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKG   59 (75)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~   59 (75)
                      .++.++......++..+.+.+...+.+ .+..+.+++.++..++..+..++..||++.
T Consensus       136 ~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (406)
T PRK15402        136 IKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAG  193 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence            345555555555555666666565655 455677887788877777767777898864

>PRK10054 putative transporter; Provisional

Probab=96.17  E-value=0.05  Score=34.30  Aligned_cols=57  Identities=14%  Similarity=-0.073  Sum_probs=41.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETK   58 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~pet~   58 (75)
                      |+++.++......++..+.+.+...+.+.+....|++.++..++..+...+++||++
T Consensus       130 ~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~  186 (395)
T PRK10054        130 KTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQIWVQRSE  186 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhccc
Confidence            677788888888888888888877766655556777777777766666666677654

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=96.05  E-value=0.0096  Score=37.87  Aligned_cols=59  Identities=17%  Similarity=0.045  Sum_probs=43.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGR   60 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~~   60 (75)
                      |++++++......++..+.+.+...+.+ .+..+.|++.+...++..+...+..||++.+
T Consensus       124 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~  183 (485)
T TIGR00711       124 RGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPA  183 (485)
T ss_pred             HHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCcccc
Confidence            6788888888888888888888777776 5556777777777777767777777876543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK11663 regulatory protein UhpC; Provisional

Probab=95.99  E-value=0.08  Score=33.70  Aligned_cols=56  Identities=11%  Similarity=-0.006  Sum_probs=41.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPET   57 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet   57 (75)
                      |++++++......++..+.+.+...+.+ .+..+.|++.++..++..+...+.+||+
T Consensus       145 rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~  201 (434)
T PRK11663        145 RGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDK  201 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            6788899888888898888888887776 5656777777766665555555666664

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=95.98  E-value=0.2  Score=32.60  Aligned_cols=25  Identities=8%  Similarity=-0.079  Sum_probs=18.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHH
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHF   26 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~   26 (75)
                      |++++++......++..+...+...
T Consensus       149 Rg~~~~~~~~~~~~g~~~g~~~~~~  173 (502)
T TIGR00887       149 RGAMMAAVFAMQGFGILAGAIVALI  173 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7888888888888877666665543

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=95.90  E-value=0.14  Score=33.16  Aligned_cols=55  Identities=9%  Similarity=-0.082  Sum_probs=36.1

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH----h------cchHHHHHHHHHHHHHHHHHHHhccC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME----W------SKTGTFSIFWVICAAGVAFVTFLVPE   56 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~----~------~~~~~~~~f~~~~~~~~~~~~~~~pe   56 (75)
                      |++++++......++..+...+.|.+..    .      +..+.|++.+++.++..+..+++.++
T Consensus       157 rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~  221 (476)
T PLN00028        157 VGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQD  221 (476)
T ss_pred             eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            7788888877777777777666665533    1      33467777777777666655555444

>TIGR00901 2A0125 AmpG-related permease

Probab=95.81  E-value=0.17  Score=31.08  Aligned_cols=58  Identities=12%  Similarity=-0.035  Sum_probs=39.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hc--------chHHHHHHHHHHHHHHHHHHHhccCCCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WS--------KTGTFSIFWVICAAGVAFVTFLVPETKG   59 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------~~~~~~~f~~~~~~~~~~~~~~~pet~~   59 (75)
                      |+++.++......++..+.+.+...+.. .+        ....|++.++..++.....++..||++.
T Consensus       117 r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~  183 (356)
T TIGR00901       117 LGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQE  183 (356)
T ss_pred             hchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence            6778888887888888877777776665 44        4456776776666655555555688643

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=95.71  E-value=0.091  Score=34.46  Aligned_cols=63  Identities=8%  Similarity=-0.041  Sum_probs=53.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCCCCHHH
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEE   64 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~~~~~~   64 (75)
                      |..+.++...+-+.+..+.+.+-....+ .+...++.+-.+..++..++...++||+...+.++
T Consensus       146 R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~  209 (463)
T KOG2816|consen  146 RSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERS  209 (463)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccc
Confidence            7788888899889999898888888887 67778888888889999999999999998776554

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=95.51  E-value=0.18  Score=31.82  Aligned_cols=57  Identities=16%  Similarity=0.139  Sum_probs=42.1

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETK   58 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~pet~   58 (75)
                      |++++++......++..+.+.+...+.+.+..+.|++.+...++..+...++.||.+
T Consensus       133 ~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~  189 (400)
T PRK11646        133 RGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFNAWLLPAYK  189 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            678889999999999988888888777655556777766666666555566677743

>PRK03545 putative arabinose transporter; Provisional

Probab=95.50  E-value=0.15  Score=31.84  Aligned_cols=53  Identities=8%  Similarity=-0.123  Sum_probs=43.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhc
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLV   54 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~   54 (75)
                      |++++++......++..+.+.+...+.+ .+....++..+...+++.++.+...
T Consensus       327 ~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        327 TDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence            6778888888899999999999999998 7777788888888888777776655

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=95.46  E-value=0.059  Score=34.44  Aligned_cols=56  Identities=9%  Similarity=0.051  Sum_probs=41.0

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-h-cchHHHHHHHHHHHHHHHHHHHhccCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-W-SKTGTFSIFWVICAAGVAFVTFLVPET   57 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~f~~~~~~~~~~~~~~~pet   57 (75)
                      |++++++......++..+.+.+...+.+ . +....|++.++..++..+..+++.+|.
T Consensus       165 r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~  222 (465)
T TIGR00894       165 RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADD  222 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCC
Confidence            6788888888888888888888887776 3 556677777777766655555555543

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=95.42  E-value=0.15  Score=31.83  Aligned_cols=59  Identities=12%  Similarity=-0.007  Sum_probs=41.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGRT   61 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~~~   61 (75)
                      |+++.++......++..+.+.+...+.+ .+....+++.++..+++.+..+ ++++.+++.
T Consensus       336 ~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  395 (399)
T PRK05122        336 RGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTW-LLYRRAPRA  395 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-Hhccccccc
Confidence            6788888888888888888888887777 5656677777777776655554 455555543

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=95.41  E-value=0.18  Score=32.12  Aligned_cols=57  Identities=11%  Similarity=-0.035  Sum_probs=39.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH--hcchHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME--WSKTGTFSIFWVICAAGVAFVTFLVPETK   58 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~f~~~~~~~~~~~~~~~pet~   58 (75)
                      |++++++......++..+.+.+.....+  .+....|++.++.+++..+..++++||++
T Consensus       152 rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~  210 (438)
T TIGR00712       152 RGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTP  210 (438)
T ss_pred             chhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence            6788888777777777776666554433  34456777777777777777777777753

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=95.41  E-value=0.38  Score=31.65  Aligned_cols=70  Identities=7%  Similarity=-0.059  Sum_probs=44.9

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH------h-------------cchHHHHHHHHHHHHHHHHHHHhccCCC--CC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME------W-------------SKTGTFSIFWVICAAGVAFVTFLVPETK--GR   60 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-------------~~~~~~~~f~~~~~~~~~~~~~~~pet~--~~   60 (75)
                      |+++.++....+.++..+..++.|.+..      .             +.....++++...++..+..++++++.+  ..
T Consensus       161 rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~~~  240 (462)
T PRK15034        161 QGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASSRA  240 (462)
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccc
Confidence            6788888887788888888888776552      1             1233455777777777777777776643  33


Q ss_pred             CHHHHHHHHhh
Q 035031           61 TLEEIQASITK   71 (75)
Q Consensus        61 ~~~~~~~~~~~   71 (75)
                      +.+|..+.+++
T Consensus       241 ~~~~~~~vlk~  251 (462)
T PRK15034        241 SIADQLPVLQR  251 (462)
T ss_pred             CHHHHHHHhCC
Confidence            45554444443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=95.38  E-value=0.076  Score=33.15  Aligned_cols=57  Identities=16%  Similarity=-0.063  Sum_probs=36.4

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK   58 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~   58 (75)
                      |++++++......++..+.+.+...+.+ .+....|++.++..++..+....++||+.
T Consensus       137 r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  194 (406)
T PRK11551        137 RGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESR  194 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            6677777777666776666665544444 34445666666666666666666788864

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=95.32  E-value=0.39  Score=31.59  Aligned_cols=70  Identities=9%  Similarity=-0.002  Sum_probs=47.0

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH--hcchHHHHHHHHHHHHHHHHH-HHhc--cCC-CCCCHHHHHHHHhh
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME--WSKTGTFSIFWVICAAGVAFV-TFLV--PET-KGRTLEEIQASITK   71 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~f~~~~~~~~~~~-~~~~--pet-~~~~~~~~~~~~~~   71 (75)
                      |++..++..+...+++.+.--+...+-+  .|....|+++++.+++..+.- +++-  |+. +..+.+|.+..-++
T Consensus       162 rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~is~~El~~I~~~  237 (466)
T KOG2532|consen  162 RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPNISEKELKYIEKG  237 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhc
Confidence            6677888888888888777777777776  466789999998887765543 3332  333 44566676554433

>TIGR00891 2A0112 putative sialic acid transporter

Probab=95.20  E-value=0.35  Score=29.85  Aligned_cols=57  Identities=14%  Similarity=0.166  Sum_probs=35.2

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hc--chHHHHHHHHHHHHHHHHHHHhccCCCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WS--KTGTFSIFWVICAAGVAFVTFLVPETKG   59 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~f~~~~~~~~~~~~~~~pet~~   59 (75)
                      |+++.++......++..+.+.+...+.+ .+  ..+.+++ .+...+..++....+||++.
T Consensus       134 ~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~-~~~~~~~~~~~~~~~~~~~~  193 (405)
T TIGR00891       134 RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFI-SILPIIFALWLRKNIPEAED  193 (405)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHH-HHHHHHHHHHHHHhCCCChh
Confidence            6778888888888888888877777665 33  2334443 33333333444556788653

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=95.19  E-value=0.14  Score=32.27  Aligned_cols=54  Identities=17%  Similarity=0.356  Sum_probs=42.8

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccC
Q 035031            1 MKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPE   56 (75)
Q Consensus         1 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~pe   56 (75)
                      .|++++++....+++++...+.+.+.+.. +....|.++++..+++.+.+. ..|+
T Consensus       313 ~rgt~~G~~~~~g~~~~~~~~~~~~~~~~-~~~~~f~~~~~~~~i~~~~~~-~~~~  366 (368)
T TIGR00903       313 LHGKAAGAIGFTSRAISVALALAAMLFIS-SAEAYFTFLAILITIAFAIAL-LLPN  366 (368)
T ss_pred             hcCcccchhhHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHH-hCCC
Confidence            48999999999999999999999887773 556778888888887777654 3344

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00897 2A0118 polyol permease family

Probab=95.17  E-value=0.22  Score=31.39  Aligned_cols=51  Identities=16%  Similarity=0.190  Sum_probs=41.9

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHH
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTF   52 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~   52 (75)
                      |++++|+......+++.+.+.+...+.+ .+....+++.++..+++.+..+|
T Consensus       348 ~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~  399 (402)
T TIGR00897       348 KGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF  399 (402)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            7889999999999999999999999988 67677888887777776665543

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=95.14  E-value=0.24  Score=30.03  Aligned_cols=57  Identities=14%  Similarity=-0.051  Sum_probs=37.0

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHh-ccCCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFL-VPETK   58 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~-~pet~   58 (75)
                      |+++.++......++..+.+.+...+.+ .+..+.+++.++..++..+..+.. .||.+
T Consensus       126 ~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (365)
T TIGR00900       126 LTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELA  184 (365)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCC
Confidence            6778888888888888888888777776 454556666555555544443332 34443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=95.14  E-value=0.31  Score=30.40  Aligned_cols=56  Identities=13%  Similarity=0.070  Sum_probs=30.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 035031            5 AGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGR   60 (75)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~~   60 (75)
                      +.++......++..+.+.+...+.+ .+..+.|++.++...+......++.||++..
T Consensus       133 ~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  189 (394)
T PRK11652        133 ANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRPA  189 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCcc
Confidence            3444444444444444444444444 4445667766666665555566678886543

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=95.10  E-value=0.039  Score=33.34  Aligned_cols=58  Identities=12%  Similarity=0.083  Sum_probs=40.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKG   59 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~   59 (75)
                      |++++++......++..+.+.+...+.+ .+..+.|++.++..++..+....+.++++.
T Consensus       119 ~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~  177 (352)
T PF07690_consen  119 RGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPP  177 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---ST
T ss_pred             hhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhccc
Confidence            6788888888888888888888777765 444567888888888777654455554443

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=95.02  E-value=0.069  Score=32.46  Aligned_cols=56  Identities=14%  Similarity=0.144  Sum_probs=34.0

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPET   57 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet   57 (75)
                      |+++.++......++..+...+...+.+ .+..+.|++.++..++..+..+++++|.
T Consensus       124 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~  180 (377)
T TIGR00890       124 RGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYP  180 (377)
T ss_pred             cHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecC
Confidence            5566666666655555554444444444 4445677777777777777666666543

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=94.98  E-value=0.35  Score=31.28  Aligned_cols=54  Identities=19%  Similarity=0.086  Sum_probs=40.2

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhcc
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVP   55 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~p   55 (75)
                      |++++++.....-+...+..=+=.++=+ ++....|+..+.+.++.....+..+|
T Consensus       135 ~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         135 RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             hhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            6777777776666665554444444545 66678999999999999999999999

>TIGR00893 2A0114 d-galactonate transporter

Probab=94.97  E-value=0.14  Score=31.19  Aligned_cols=50  Identities=12%  Similarity=0.092  Sum_probs=39.0

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hc-chHHHHHHHHHHHHHHHHHH
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WS-KTGTFSIFWVICAAGVAFVT   51 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~f~~~~~~~~~~~~   51 (75)
                      |++++++.....+++..+.+.+.+.+.+ .+ ....+++.++..+++.+..+
T Consensus       345 ~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       345 AGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL  396 (399)
T ss_pred             HHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence            7889999999999999999999999988 45 45666666666666655544

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=94.94  E-value=0.2  Score=31.88  Aligned_cols=60  Identities=8%  Similarity=0.109  Sum_probs=32.5

Q ss_pred             CcchhHHHHHHHHHHH-HHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHHHhccCCCCCCH
Q 035031            1 MKGLAGSLVIFIHHCI-NWTITFTFHFMMEWSKTG-TFSIFWVICAAGVAFVTFLVPETKGRTL   62 (75)
Q Consensus         1 ~R~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~pet~~~~~   62 (75)
                      .|++++|++...++.. +...+++...+...+.+. .+++.++..+++.+..+  ..+++||+.
T Consensus       369 ~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~--~l~~~~~~~  430 (432)
T PRK10406        369 VRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSL--MLHRKGKGM  430 (432)
T ss_pred             ccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH--Hhhhccccc
Confidence            4889999998876653 444555555332233333 33333444444444433  356677764

>PRK12382 putative transporter; Provisional

Probab=94.94  E-value=0.31  Score=30.37  Aligned_cols=53  Identities=8%  Similarity=-0.049  Sum_probs=42.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhc
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLV   54 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~   54 (75)
                      |+++.++......++..+.+.+...+.+ .+....+.+.++..+++.+..+++.
T Consensus       336 ~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  389 (392)
T PRK12382        336 RGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILSF  389 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhc
Confidence            6788999999999999999999998888 6666778887777777766655443

>PRK12307 putative sialic acid transporter; Provisional

Probab=94.52  E-value=0.17  Score=31.85  Aligned_cols=57  Identities=11%  Similarity=0.063  Sum_probs=37.1

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcch-HHHHHHHHHHHHHHHHHHHhccCCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKT-GTFSIFWVICAAGVAFVTFLVPETK   58 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~f~~~~~~~~~~~~~~~pet~   58 (75)
                      |++++|+.....++++.+.+.+...+.+ .+.. ..+++..+.+........++.||+.
T Consensus       355 ~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (426)
T PRK12307        355 RGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFIVAFWTATILLIIGLSIPDRL  413 (426)
T ss_pred             HhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhccccCChhh
Confidence            6888999999999999999999888887 4432 2333333334444333344556643

>PRK15011 sugar efflux transporter B; Provisional

Probab=94.52  E-value=0.57  Score=29.42  Aligned_cols=55  Identities=16%  Similarity=0.135  Sum_probs=37.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPET   57 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet   57 (75)
                      |++++++......++..+.+.+...+.+ .+....+++-++..++ ..+.+++.|||
T Consensus       338 ~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~  393 (393)
T PRK15011        338 AGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIA-TLFCLLRIKDV  393 (393)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHhhcCC
Confidence            5677888878888888999999988888 5544555544444444 44455566764

>TIGR00899 2A0120 sugar efflux transporter

Probab=94.51  E-value=0.43  Score=29.26  Aligned_cols=53  Identities=9%  Similarity=-0.110  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCC
Q 035031            7 SLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKG   59 (75)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~   59 (75)
                      +.....+.++..+.+.+...+.+ .+..+.|++.+...++..+..++++||.+.
T Consensus       128 ~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~  181 (375)
T TIGR00899       128 SVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPR  181 (375)
T ss_pred             HHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence            44444445556666666665655 555677888877777777777777887543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=94.36  E-value=0.29  Score=30.56  Aligned_cols=51  Identities=6%  Similarity=-0.004  Sum_probs=34.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHh-cch-HHHHHHHHHHHHHHHHHHH
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMMEW-SKT-GTFSIFWVICAAGVAFVTF   52 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~f~~~~~~~~~~~~~   52 (75)
                      |+++.++....+.+++.+.+.+...+.+. +.+ ..++......+.+.+..++
T Consensus       342 ~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (406)
T PRK11551        342 RGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALL  394 (406)
T ss_pred             hhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence            78899999999999999999999988873 333 2333333334444444443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=94.32  E-value=0.33  Score=31.31  Aligned_cols=54  Identities=17%  Similarity=0.186  Sum_probs=39.9

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhcc
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVP   55 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~p   55 (75)
                      |+++.++....+.++..+.+.+.+.+.+ .+..+.|++.+++.++..+..++..|
T Consensus       141 r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~  195 (455)
T TIGR00892       141 RPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRP  195 (455)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCC
Confidence            6788888888888888888888887777 66667888887777665554444333

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=94.27  E-value=0.8  Score=28.86  Aligned_cols=28  Identities=18%  Similarity=0.233  Sum_probs=23.2

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME   29 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~   29 (75)
                      ++.+.|+.+....++..+.+.+...+.+
T Consensus       352 ~G~~~~~~~~~~~~g~~lg~~i~g~ll~  379 (437)
T TIGR00792       352 EGLVYSVRTFVRKLGQALAGFLVGLILG  379 (437)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567788888899999999988888876

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=94.17  E-value=0.61  Score=29.91  Aligned_cols=57  Identities=12%  Similarity=-0.076  Sum_probs=31.8

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHH-HHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTF-HFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK   58 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~   58 (75)
                      |++++++......++..+...+. ..+.. .+..+.|++.++...+..+..++++||+.
T Consensus       154 r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~  212 (452)
T PRK11273        154 RGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTP  212 (452)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCH
Confidence            56677776555555543332222 11212 23345677777777776666777778764

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=94.16  E-value=0.24  Score=29.69  Aligned_cols=50  Identities=12%  Similarity=0.083  Sum_probs=41.0

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHH
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVT   51 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~   51 (75)
                      |++++++....+.++..+.+.+...+.+ .+....+.+.++..+++.+..+
T Consensus       299 ~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         299 RGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL  349 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence            7889999999999999999999999987 5666778777777777666543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=93.93  E-value=0.61  Score=29.20  Aligned_cols=56  Identities=13%  Similarity=-0.041  Sum_probs=33.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHH---HHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTF---HFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK   58 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~   58 (75)
                      |++++++......++..+.+.+.   ....+ .+..+.|++.+.. .+..+...+++||+.
T Consensus       161 r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~-~~~~~~~~~~l~~~~  220 (481)
T TIGR00879       161 RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIP-AGLLFLGLFFLPESP  220 (481)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHH-HHHHHHHHhcCCCCh
Confidence            67788888888888777777766   22212 3334556553333 333344556788874

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=93.92  E-value=0.54  Score=28.77  Aligned_cols=56  Identities=14%  Similarity=0.007  Sum_probs=32.9

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-h----------cchHHH-HHHHHHHHHHHHHHHHhccCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-W----------SKTGTF-SIFWVICAAGVAFVTFLVPET   57 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~-~~f~~~~~~~~~~~~~~~pet   57 (75)
                      |++++++......++..+...+.+.+.. .          +..+.+ +..++...+..+..+.+.+|+
T Consensus       124 r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (366)
T TIGR00886       124 QGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADT  191 (366)
T ss_pred             hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccC
Confidence            6777777777777777777777776654 1          223445 333444444444445555554

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=93.76  E-value=0.049  Score=33.12  Aligned_cols=57  Identities=14%  Similarity=0.032  Sum_probs=36.2

Q ss_pred             cchhHHHHHHHHHHHHHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031            2 KGLAGSLVIFIHHCINWTITF-TFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK   58 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~   58 (75)
                      |++++++......++..+.+. +...+.+ .+..+.|++.+++.++..+..+++.||++
T Consensus       117 r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (379)
T TIGR00881       117 RGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSP  175 (379)
T ss_pred             heeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCc
Confidence            566677777777777777773 3333433 44456677677666666666666677654

>PRK12307 putative sialic acid transporter; Provisional

Probab=93.56  E-value=0.42  Score=30.05  Aligned_cols=56  Identities=16%  Similarity=0.166  Sum_probs=33.4

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK   58 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~   58 (75)
                      |+++.++......++..+.+.+.+.+.+ .+..+.+++ .....+...+.....||++
T Consensus       140 r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i-~~~~~~~~~~~~~~~p~~~  196 (426)
T PRK12307        140 KSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFV-GLLPVLLVIYIRARAPESK  196 (426)
T ss_pred             hhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHH-HHHHHHHHHHHHHHCCCCh
Confidence            6778888888778888887777777666 444455554 2333222233333456654

>PRK11043 putative transporter; Provisional

Probab=93.45  E-value=1.2  Score=27.92  Aligned_cols=50  Identities=8%  Similarity=0.073  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccC
Q 035031            7 SLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPE   56 (75)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pe   56 (75)
                      +.......++..+.+.+...+.+ .+..+.+++.++..++..+..++..|+
T Consensus       133 ~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  183 (401)
T PRK11043        133 ATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPS  183 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            33333444455556666666655 454566777766666655544443333

>PRK09952 shikimate transporter; Provisional

Probab=93.28  E-value=1  Score=28.88  Aligned_cols=56  Identities=5%  Similarity=0.025  Sum_probs=35.0

Q ss_pred             cchhHHHHHHHHH-HHHHHHHHHHHHHHH-hcc--hHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031            2 KGLAGSLVIFIHH-CINWTITFTFHFMME-WSK--TGTFSIFWVICAAGVAFVTFLVPETK   58 (75)
Q Consensus         2 R~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~--~~~~~~f~~~~~~~~~~~~~~~pet~   58 (75)
                      |+++.+++..... +++.+.+.+...+.+ .+.  ...+.+.++..+++.+.. +.++||+
T Consensus       377 r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~-~~~~~~~  436 (438)
T PRK09952        377 RYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTA-LLMKDNQ  436 (438)
T ss_pred             hHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH-HHccccc
Confidence            6778888766654 778888888888877 322  234444444555554444 4567754

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=93.25  E-value=2  Score=30.05  Aligned_cols=56  Identities=11%  Similarity=0.003  Sum_probs=27.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-h------------cchHHHHHHHHHHHHHHHHHHHhccCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-W------------SKTGTFSIFWVICAAGVAFVTFLVPET   57 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------------~~~~~~~~f~~~~~~~~~~~~~~~pet   57 (75)
                      |++.+++......++..+.+.+...+.. .            ..|..++.+.++..+..++.++++||+
T Consensus       289 Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPES  357 (742)
T TIGR01299       289 RGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPES  357 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            4555555555555555444443322221 1            123233334444444455667789998

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK09528 lacY galactoside permease; Reviewed

Probab=93.18  E-value=0.73  Score=29.13  Aligned_cols=47  Identities=13%  Similarity=0.022  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccC
Q 035031           10 IFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPE   56 (75)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pe   56 (75)
                      .....++..+.+.+...+.+ .+....|.+.++..++..++.++.+++
T Consensus       358 ~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~  405 (420)
T PRK09528        358 QFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG  405 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence            34566777777888888887 566677777777777766666665655

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=93.12  E-value=0.64  Score=28.95  Aligned_cols=55  Identities=9%  Similarity=-0.115  Sum_probs=41.9

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPE   56 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pe   56 (75)
                      |++.+++......++..+.+.+...+.+ .+....|++.++..+++.++.++..++
T Consensus       345 ~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~  400 (408)
T PRK09874        345 AGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLRR  400 (408)
T ss_pred             ceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677788888888888888888887777 566678888888888877776655433

>PRK03893 putative sialic acid transporter; Provisional

Probab=93.08  E-value=0.16  Score=32.64  Aligned_cols=55  Identities=2%  Similarity=-0.080  Sum_probs=36.9

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHH-HHHHHHHHHhccC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVIC-AAGVAFVTFLVPE   56 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~-~~~~~~~~~~~pe   56 (75)
                      |++++++......++..+.+.+...+.+ .+....+...++.. +...+...+..|+
T Consensus       400 ~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  456 (496)
T PRK03893        400 RAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTFVVILLIGLDMPS  456 (496)
T ss_pred             hhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence            6788888889999999999999998887 55455554444433 3333334444454

>PTZ00207 hypothetical protein; Provisional

Probab=92.98  E-value=1.8  Score=29.50  Aligned_cols=56  Identities=4%  Similarity=-0.076  Sum_probs=39.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPET   57 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~pet   57 (75)
                      |+.+.|+......+++.+.+.+.......+....+++.++...+..+..+.++++.
T Consensus       153 RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr~p  208 (591)
T PTZ00207        153 RGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMRLP  208 (591)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeCC
Confidence            78889999999999988877777666553444567777777777666666666443

>PRK11010 ampG muropeptide transporter; Validated

Probab=92.92  E-value=1.4  Score=28.90  Aligned_cols=56  Identities=9%  Similarity=0.141  Sum_probs=40.4

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-h-cchHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-W-SKTGTFSIFWVICAAGVAFVTFLVPETK   58 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~f~~~~~~~~~~~~~~~pet~   58 (75)
                      |+++.++......++..+.+.+...+.+ . +....|++.++..++..+..+ ++||+.
T Consensus       141 rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~-~~~e~~  198 (491)
T PRK11010        141 RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL-LAPEPT  198 (491)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH-hcCCCc
Confidence            6788889998888888888888777776 3 455677777766666544433 578874

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=92.83  E-value=0.17  Score=33.15  Aligned_cols=61  Identities=16%  Similarity=0.098  Sum_probs=41.9

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHH--HHHHH-hcchHHHHHHHHHHHHHHHHHHHhc---cCCCCCCH
Q 035031            2 KGLAGSLVIFIHHCINWTITFTF--HFMME-WSKTGTFSIFWVICAAGVAFVTFLV---PETKGRTL   62 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~---pet~~~~~   62 (75)
                      |++..|+=..++++++.+.+.+.  ..... .+....|++-+++.++..+++++.+   ||+.|.+.
T Consensus       151 RG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~  217 (448)
T COG2271         151 RGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPP  217 (448)
T ss_pred             cCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCC
Confidence            56666666778888888887777  44444 3445677777777777777766655   77778764

>PF13347 MFS_2: MFS/sugar transport protein

Probab=92.80  E-value=0.47  Score=30.19  Aligned_cols=55  Identities=9%  Similarity=0.052  Sum_probs=39.4

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hc-------chHHHHHHHHHHHHHHHHHHHhccC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WS-------KTGTFSIFWVICAAGVAFVTFLVPE   56 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~f~~~~~~~~~~~~~~~pe   56 (75)
                      |.+..+.-.....+++.+...+.+.+.+ .+       .....++++++..+..+.+++..+|
T Consensus       138 R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  138 RTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence            6777788888888888888888887776 22       2344555666666666677777788

>PRK03893 putative sialic acid transporter; Provisional

Probab=92.58  E-value=0.92  Score=29.17  Aligned_cols=56  Identities=13%  Similarity=0.154  Sum_probs=34.9

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK   58 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~   58 (75)
                      |+++.++......++..+.+.+...+.+ .+..+.|++ +....+.........||++
T Consensus       142 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~-~~~~~~~~~~~~~~~p~~~  198 (496)
T PRK03893        142 RNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFI-GILPIIFALWLRKNLPEAE  198 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHH-HHHHHHHHHHHHHhCCCch
Confidence            5677788888888888888888887776 443444443 3333333333344567754

>PRK09528 lacY galactoside permease; Reviewed

Probab=92.53  E-value=0.67  Score=29.30  Aligned_cols=53  Identities=8%  Similarity=-0.097  Sum_probs=31.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccCC
Q 035031            5 AGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPET   57 (75)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~pet   57 (75)
                      .++.......++..+.+.+...+.+.+....|++.++..++..+..++..||.
T Consensus       142 ~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~  194 (420)
T PRK09528        142 EYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILLVLLFFAKPDA  194 (420)
T ss_pred             cchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHhcccccc
Confidence            34445555556666677776666664555677776666666655555444443

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=92.43  E-value=0.49  Score=28.72  Aligned_cols=53  Identities=11%  Similarity=0.042  Sum_probs=34.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhc
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLV   54 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~   54 (75)
                      |+++.++.....-+++.+.++++..+.+........+.+....+..+...+++
T Consensus       129 RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~v  181 (250)
T PF06813_consen  129 RGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFV  181 (250)
T ss_pred             cCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhhe
Confidence            88899999999999999999998887764333333444444333333333334

>PRK15011 sugar efflux transporter B; Provisional

Probab=92.38  E-value=1.8  Score=27.23  Aligned_cols=53  Identities=11%  Similarity=-0.121  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCC
Q 035031            7 SLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKG   59 (75)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~   59 (75)
                      ++......++..+.+.+...+.+ .+....|++.+...++..+..++++||.+.
T Consensus       146 ~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~  199 (393)
T PRK15011        146 SFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRK  199 (393)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCC
Confidence            44445556677777777776765 565667777777777777777777888754

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=92.38  E-value=0.88  Score=28.68  Aligned_cols=57  Identities=7%  Similarity=-0.048  Sum_probs=36.0

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-h-------cchHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-W-------SKTGTFSIFWVICAAGVAFVTFLVPETK   58 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~f~~~~~~~~~~~~~~~pet~   58 (75)
                      |++..++......++..+...+.+++.. .       +....+.+.+++..+.....+++.||.+
T Consensus       134 R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~  198 (437)
T TIGR00792       134 RESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERY  198 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecC
Confidence            5666777777777777777666555553 2       2224556666666666666667778764

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=92.33  E-value=1.6  Score=31.25  Aligned_cols=57  Identities=12%  Similarity=-0.143  Sum_probs=39.0

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETK   58 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~pet~   58 (75)
                      |++++|+......++..+.+.+-..+....++..+++..+...+....+.+++|+++
T Consensus       142 ~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (1140)
T PRK06814        142 LLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTG  198 (1140)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence            678999999999999999999888887733333333444444444455556677654

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=92.33  E-value=2  Score=27.68  Aligned_cols=58  Identities=12%  Similarity=0.165  Sum_probs=35.4

Q ss_pred             CcchhHHHHHHHH-HHHHHHHHHHHHHHHH-hcchH------HHHHHHHHHHHHHHHHHHhccCCC
Q 035031            1 MKGLAGSLVIFIH-HCINWTITFTFHFMME-WSKTG------TFSIFWVICAAGVAFVTFLVPETK   58 (75)
Q Consensus         1 ~R~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~------~~~~f~~~~~~~~~~~~~~~pet~   58 (75)
                      +|++++++-.... -++..+.+++...+++ .+...      .+.+.++..++..+..+.+.+|+.
T Consensus       334 ~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~~  399 (400)
T PF03825_consen  334 LRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPKH  399 (400)
T ss_pred             chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence            4788999877664 4666777888888888 55443      233344444444444444555544

>TIGR00899 2A0120 sugar efflux transporter

Probab=92.27  E-value=1.5  Score=26.83  Aligned_cols=49  Identities=14%  Similarity=0.059  Sum_probs=36.0

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHH
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFV   50 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~   50 (75)
                      |+++.++......++..+.+.+...+.+ .+....+++.++..+++.+..
T Consensus       321 ~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~  370 (375)
T TIGR00899       321 AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCL  370 (375)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence            3567888888888889999999988887 555666776666666655543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=92.21  E-value=0.87  Score=29.35  Aligned_cols=50  Identities=10%  Similarity=0.090  Sum_probs=33.6

Q ss_pred             cchhHHHHHHHHHH-HHHHHHHHHHHHHH-------------hcchHHHHHHHHHHHHHHHHHH
Q 035031            2 KGLAGSLVIFIHHC-INWTITFTFHFMME-------------WSKTGTFSIFWVICAAGVAFVT   51 (75)
Q Consensus         2 R~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------------~~~~~~~~~f~~~~~~~~~~~~   51 (75)
                      |+++.|+.....++ +.++.+.+...+.+             .+....|+++.+..+++.+..+
T Consensus       383 ~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~  446 (467)
T PRK09556        383 IGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA  446 (467)
T ss_pred             HHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence            67788888888886 55788888887776             1234566666666666555443

>PRK10504 putative transporter; Provisional

Probab=92.18  E-value=1.8  Score=27.76  Aligned_cols=57  Identities=16%  Similarity=-0.034  Sum_probs=38.1

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK   58 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~   58 (75)
                      |+++.++......++..+.+.+...+.+ .+..+.|.+......+..+......|+.+
T Consensus       132 ~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~  189 (471)
T PRK10504        132 YMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYT  189 (471)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            4566777777777777777777777766 44456676666666666666666667654

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=92.01  E-value=0.14  Score=33.86  Aligned_cols=58  Identities=17%  Similarity=-0.012  Sum_probs=44.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-------hcchHHHHHHHHHHHHHHHHHHHhccCCCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-------WSKTGTFSIFWVICAAGVAFVTFLVPETKG   59 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~f~~~~~~~~~~~~~~~pet~~   59 (75)
                      |+.-+++-.+.+-+++.+.+++...+++       .+..+.|++-++++++..+++++++|+-..
T Consensus       168 ~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~  232 (495)
T KOG2533|consen  168 RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS  232 (495)
T ss_pred             hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence            5667778888888888888888776543       244578888898999988899999988655

>TIGR00898 2A0119 cation transport protein

Probab=91.95  E-value=2.3  Score=27.54  Aligned_cols=53  Identities=11%  Similarity=0.060  Sum_probs=26.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPET   57 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~pet   57 (75)
                      |+.+.++......++..+.+.+...+.  ...+.+++.++..++..+.. +++||+
T Consensus       214 r~~~~~~~~~~~~~g~~~~~~~~~~~~--~wr~~~~~~~i~~~~~~~~~-~~~~es  266 (505)
T TIGR00898       214 RAIVGTLIQVFFSLGLVLLPLVAYFIP--DWRWLQLAVSLPTFLFFLLS-WFVPES  266 (505)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHH-HhcCCC
Confidence            555566654444444443333322222  22355666666665554444 678986

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=91.65  E-value=1.2  Score=29.57  Aligned_cols=53  Identities=17%  Similarity=0.154  Sum_probs=34.2

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcch-------HHHHHHHHHHHHHHHHHHHhc
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKT-------GTFSIFWVICAAGVAFVTFLV   54 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~f~~~~~~~~~~~~~~~   54 (75)
                      |.+-.++=.....++++++..+.+++.+ .+..       ....+++++..+...++++-.
T Consensus       147 R~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v  207 (467)
T COG2211         147 RASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNV  207 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5666777788888999999999999888 3221       233344444444555555443

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=91.64  E-value=0.59  Score=31.08  Aligned_cols=54  Identities=15%  Similarity=0.176  Sum_probs=43.4

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhcc
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVP   55 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~p   55 (75)
                      |+.+.|++....-++.++.+.+..++.+ .+..+..++++.+.+-..+.....-|
T Consensus       168 R~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp  222 (509)
T KOG2504|consen  168 RALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP  222 (509)
T ss_pred             HHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence            7888888888888888888888888888 77788899988888766666666556

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=91.59  E-value=1  Score=27.31  Aligned_cols=45  Identities=4%  Similarity=-0.120  Sum_probs=33.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHH
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAG   46 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~   46 (75)
                      |+++.++......++..+.+.+...+.+ .+....+.+.+++.+++
T Consensus       329 ~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       329 SAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             hhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            6788888888899999999998888877 55555666655555443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=91.51  E-value=0.18  Score=32.49  Aligned_cols=48  Identities=15%  Similarity=-0.018  Sum_probs=33.8

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hc-chHHHHHHHHHHHHHHHH
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WS-KTGTFSIFWVICAAGVAF   49 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~f~~~~~~~~~~   49 (75)
                      |++++++......++..+.+.+...+.+ .+ ....|++.++..+++.++
T Consensus       367 ~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~  416 (455)
T TIGR00892       367 FSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF  416 (455)
T ss_pred             HhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence            5678888888888888888888887777 43 345666665555554443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=91.35  E-value=0.91  Score=29.69  Aligned_cols=54  Identities=11%  Similarity=0.022  Sum_probs=42.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hc---chHHHHHHHHHHHHHHHHHHHhccC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WS---KTGTFSIFWVICAAGVAFVTFLVPE   56 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~f~~~~~~~~~~~~~~~pe   56 (75)
                      ++.++++.. .++++..+..++.|.+.. .+   ......++....++..+..++.+-|
T Consensus       138 qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d  195 (417)
T COG2223         138 QGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMND  195 (417)
T ss_pred             hhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            578899999 999999999999998887 55   4566777777777777777776633

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=91.17  E-value=1.8  Score=28.78  Aligned_cols=47  Identities=17%  Similarity=0.062  Sum_probs=35.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHH
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVA   48 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~   48 (75)
                      |.++.++.....++++++.+.+.+.+.+ .+..+.|.+.++...++.+
T Consensus       136 R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li  183 (493)
T PRK15462        136 RDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLV  183 (493)
T ss_pred             ccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHH
Confidence            7889999999999999999999999887 5655666665444444333

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=90.79  E-value=0.89  Score=29.44  Aligned_cols=56  Identities=16%  Similarity=0.138  Sum_probs=39.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPET   57 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet   57 (75)
                      |+.-++.+..+..+++.+...+..++.+ .+....|.+.+.+..+..+...+..+|.
T Consensus       122 ~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e~  178 (433)
T PF03092_consen  122 RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEER  178 (433)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhhc
Confidence            3455666777777777777777777777 5566777777777777766677777763

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK15075 citrate-proton symporter; Provisional

Probab=90.58  E-value=2.6  Score=26.90  Aligned_cols=60  Identities=13%  Similarity=0.224  Sum_probs=34.1

Q ss_pred             CcchhHHHHHHHHHH-HHHHHHHHHHHHHH-hcch---HHHHHHHHHHHHHHHHHHHhccCCCCCCHH
Q 035031            1 MKGLAGSLVIFIHHC-INWTITFTFHFMME-WSKT---GTFSIFWVICAAGVAFVTFLVPETKGRTLE   63 (75)
Q Consensus         1 ~R~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~---~~~~~f~~~~~~~~~~~~~~~pet~~~~~~   63 (75)
                      .|+++.++....... ++.+.+.+...+.+ .+..   ..+.+++.++.   ....+...+-++..+.
T Consensus       364 ~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  428 (434)
T PRK15075        364 VRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDKAAPGYWLSFAAVCG---LIATLVLYRRRGARLQ  428 (434)
T ss_pred             ccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHH---HHHHHHhccccchhhh
Confidence            478888887666665 47778888887777 4421   22333333322   2333455665665544

>PRK11462 putative transporter; Provisional

Probab=90.37  E-value=3.5  Score=26.82  Aligned_cols=55  Identities=15%  Similarity=0.103  Sum_probs=32.5

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcc-------hHHHHHHHHHHHHHHHHHHHhccC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSK-------TGTFSIFWVICAAGVAFVTFLVPE   56 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~f~~~~~~~~~~~~~~~pe   56 (75)
                      |++..++-...+.++..+.+.+.+++.+ .+.       .....+++++.++....+++..+|
T Consensus       144 Rt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE  206 (460)
T PRK11462        144 RISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKE  206 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhccee
Confidence            6778888888888888777777666655 321       123344444444444444444555

>TIGR01272 gluP glucose/galactose transporter

Probab=90.18  E-value=1.9  Score=26.55  Aligned_cols=27  Identities=4%  Similarity=-0.210  Sum_probs=22.0

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHH
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMM   28 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~   28 (75)
                      +++.+++..+.+-+++.+.+.+...+.
T Consensus        44 ~~~~l~~~~~~~~~G~~~gP~i~~~~i   70 (310)
T TIGR01272        44 AASRLALTQAFNKLGTTVAPLFGGSLI   70 (310)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            346688888999999999998888766

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=89.92  E-value=3.3  Score=25.88  Aligned_cols=44  Identities=9%  Similarity=0.022  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCC
Q 035031           14 HCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPET   57 (75)
Q Consensus        14 ~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet   57 (75)
                      .++..+.......+.+ .+....|++.++...+..+..++..||+
T Consensus       143 ~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~  187 (390)
T TIGR02718       143 MIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRA  187 (390)
T ss_pred             HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            4444445544445555 5656788888877777666665555553

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=89.90  E-value=3.5  Score=26.05  Aligned_cols=56  Identities=5%  Similarity=-0.084  Sum_probs=34.9

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK   58 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~   58 (75)
                      |+++.++......++..+.+.+...+.+ .+..+.+++.+...++. ....+.+||++
T Consensus       144 ~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~  200 (417)
T PRK10489        144 LMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFIT-LLPLLRLPALP  200 (417)
T ss_pred             HHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHhCCCCC
Confidence            4667777777777777777777777766 44455665544444443 33445677753

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=89.76  E-value=2.2  Score=28.19  Aligned_cols=58  Identities=19%  Similarity=0.303  Sum_probs=41.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHH-hc-chHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 035031            3 GLAGSLVIFIHHCINWTITFTFHFMME-WS-KTGTFSIFWVICAAGVAFVTFLVPETKGRT   61 (75)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~f~~~~~~~~~~~~~~~pet~~~~   61 (75)
                      +.-.|+-...++..+++.++++..+.+ .+ ....++...++.+++.+.. +.+++.|++.
T Consensus       415 ~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll-~~v~~~~g~~  474 (477)
T PF11700_consen  415 AEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILL-FFVDVEKGRE  474 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-hhccchhhhh
Confidence            345788899999999999999999988 33 4455555555556555554 5677777764

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00896 CynX cyanate transporter

Probab=89.75  E-value=3.2  Score=25.50  Aligned_cols=28  Identities=11%  Similarity=-0.135  Sum_probs=21.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME   29 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~   29 (75)
                      |++++++......++..+.+.+.+.+.+
T Consensus       120 ~~~~~~~~~~~~~~g~~i~~~~~~~l~~  147 (355)
T TIGR00896       120 VGLMTGLYSMALMGGAALAAAATVPLAQ  147 (355)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677888877777888887777777765

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=89.67  E-value=2.6  Score=28.22  Aligned_cols=61  Identities=8%  Similarity=0.035  Sum_probs=43.1

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHH-HHhccCCCCCC
Q 035031            1 MKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFV-TFLVPETKGRT   61 (75)
Q Consensus         1 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~-~~~~pet~~~~   61 (75)
                      +|++.+|+.......+..+...+...+.+ .+....+.+-++..++..+.. .+.+++.+..+
T Consensus       340 ~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~~~l~~~~~~d  402 (524)
T PF05977_consen  340 VRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALRFPLRQGEELD  402 (524)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcCcccccCC
Confidence            48899999999999999999999999888 666666665555444444443 34456655433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=89.58  E-value=3.2  Score=25.99  Aligned_cols=51  Identities=6%  Similarity=-0.119  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccCC
Q 035031            7 SLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPET   57 (75)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~pet   57 (75)
                      +.......++..+.+.+-..+.+.+....|++.+....+..+..+...||+
T Consensus       136 g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~  186 (396)
T TIGR00882       136 GKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFALILMLLLMFAKPKA  186 (396)
T ss_pred             chhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            334444445555555555544445556677777777766665555545554

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.23  E-value=0.24  Score=32.48  Aligned_cols=60  Identities=10%  Similarity=0.001  Sum_probs=44.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGRT   61 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~~~   61 (75)
                      |++++|+....--++..+.+-.=..+++ .|....|++.++++++.....++-++.++..+
T Consensus       194 r~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~  254 (464)
T KOG3764|consen  194 RGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDP  254 (464)
T ss_pred             hhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence            6777777777766666666655566777 67788999999999988887776565555554

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=89.19  E-value=1.9  Score=28.75  Aligned_cols=58  Identities=14%  Similarity=-0.007  Sum_probs=33.0

Q ss_pred             CcchhHHHHHHHHHHHHHHH-HHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031            1 MKGLAGSLVIFIHHCINWTI-TFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK   58 (75)
Q Consensus         1 ~R~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~   58 (75)
                      +||....+......++..+. ....|.+.. ...|...+.+..+..+.......++||+-
T Consensus       149 ~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESP  208 (485)
T KOG0569|consen  149 LRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESP  208 (485)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            46777677766666666666 444566654 22233333344444444455667789973

>PRK11010 ampG muropeptide transporter; Validated

Probab=89.15  E-value=3.2  Score=27.23  Aligned_cols=55  Identities=7%  Similarity=-0.000  Sum_probs=36.9

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPET   57 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet   57 (75)
                      +++..++.++...++..+.+.+...+.+ .+....|.+.++..+.+.+..++ ++++
T Consensus       350 ~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~-~~~~  405 (491)
T PRK11010        350 SATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLV-CRQT  405 (491)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence            4566777777788887878778888888 55555666666666666555544 4544

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=89.13  E-value=4.2  Score=26.00  Aligned_cols=56  Identities=18%  Similarity=0.112  Sum_probs=30.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHH--------H-hcchHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMM--------E-WSKTGTFSIFWVICAAGVAFVTFLVPETK   58 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~   58 (75)
                      |++++++......++..+...+-..+.        + .+..+.|++.++..++.. ...+++||+.
T Consensus       154 rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~-~~~~~l~~s~  218 (479)
T PRK10077        154 RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFL-MLLYFVPETP  218 (479)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHH-HHHHcCCCCc
Confidence            677777776665555555433322221        1 233456665555555543 4456789974

>PRK03699 putative transporter; Provisional

Probab=89.02  E-value=2.6  Score=26.50  Aligned_cols=48  Identities=4%  Similarity=-0.017  Sum_probs=27.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH--hcchHHHHHHHHHHHHHHHH
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME--WSKTGTFSIFWVICAAGVAF   49 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~f~~~~~~~~~~   49 (75)
                      |++++++......+++.+.+.+...+.+  .+..+.|.+.++..++..+.
T Consensus       129 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~  178 (394)
T PRK03699        129 RGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFIL  178 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence            4555555555555666666666665554  34456666666665554443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=88.86  E-value=2.9  Score=27.34  Aligned_cols=50  Identities=12%  Similarity=0.079  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCC
Q 035031           10 IFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKG   59 (75)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~   59 (75)
                      ....-++..+.+.....++| .|...+|++.+++.+...++..+.+++.|.
T Consensus       355 ~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~  405 (412)
T PF01306_consen  355 QFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKK  405 (412)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred             HHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence            45567778888888889999 776788999998888888888887766554

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=88.81  E-value=4.3  Score=25.66  Aligned_cols=56  Identities=9%  Similarity=-0.057  Sum_probs=33.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETK   58 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~pet~   58 (75)
                      |+++.++......++..+.+.+-..+.+......+.+.+...++ .....+.+||.+
T Consensus       122 ~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~-~~~~~~~l~~~~  177 (393)
T PRK11195        122 LVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYLL-AALFNLFIPRLG  177 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCCc
Confidence            67788888888888888888877777764322233322222222 234456778754

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=88.23  E-value=6.6  Score=28.16  Aligned_cols=29  Identities=21%  Similarity=0.092  Sum_probs=22.8

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMMEW   30 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~   30 (75)
                      |++++++......++..+.+.+...+...
T Consensus       137 r~~~~~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        137 LSRANGLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             chhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            67888888888888888888777766653

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=87.56  E-value=4.4  Score=24.25  Aligned_cols=48  Identities=13%  Similarity=-0.104  Sum_probs=33.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHH
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAF   49 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~   49 (75)
                      |++++++......++..+.+.+...+.+ .+..+.+++.+...++..+.
T Consensus       121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (352)
T cd06174         121 RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALL  169 (352)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            6788888888888888888888887776 44445555555555444433

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=87.20  E-value=3.9  Score=29.27  Aligned_cols=55  Identities=15%  Similarity=0.204  Sum_probs=30.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHHHHHHHhccC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMMEW--SKTGTFSIFWVICAAGVAFVTFLVPE   56 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~pe   56 (75)
                      |++++|+....+.++..+.+.+...+...  +....+++.+.+.++..++.....|+
T Consensus       356 rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (1146)
T PRK08633        356 LGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIGTLYTLLLLPD  412 (1146)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            78888888888888776655554433322  22234444444444444444444444

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=86.82  E-value=6.1  Score=25.19  Aligned_cols=44  Identities=9%  Similarity=0.013  Sum_probs=29.5

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAA   45 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~   45 (75)
                      ++++.++.....+....+.+....++...+....+...+....+
T Consensus       345 ~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  388 (413)
T PRK15403        345 KGTVSASLNMVILMVMAVSVEIGRWLWFNGGRLPFHLLAVVAGV  388 (413)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            56777788888888888877777777665555556555444433

>PRK09848 glucuronide transporter; Provisional

Probab=86.58  E-value=6.4  Score=25.21  Aligned_cols=27  Identities=26%  Similarity=0.257  Sum_probs=19.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHH
Q 035031            3 GLAGSLVIFIHHCINWTITFTFHFMME   29 (75)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~   29 (75)
                      +...|+.+....++..+.+.+...+.+
T Consensus       361 G~~~~~~~~~~klg~aig~~i~g~~l~  387 (448)
T PRK09848        361 GLTYSLFSFTRKCGQAIGGSIPAFILG  387 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566777788888888887777766654

>TIGR00897 2A0118 polyol permease family

Probab=85.98  E-value=4.7  Score=25.41  Aligned_cols=28  Identities=4%  Similarity=-0.227  Sum_probs=15.7

Q ss_pred             cchhHHHHHHHHHHHHH-HHHHHHHHHHH
Q 035031            2 KGLAGSLVIFIHHCINW-TITFTFHFMME   29 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~-~~~~~~~~~~~   29 (75)
                      |++++|+......++.. ..+.+...+.+
T Consensus       139 ~g~~~g~~~~~~~~g~~~~g~~~~~~l~~  167 (402)
T TIGR00897       139 LSSAVGWFWAVYSIGIGVFGSYYSSYAIP  167 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            67778887777666542 33333333333

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=85.50  E-value=6.5  Score=24.60  Aligned_cols=55  Identities=13%  Similarity=-0.026  Sum_probs=32.2

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPET   57 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet   57 (75)
                      |+++.+.....+.++..+.+.+-..+.+ .+....|++.++...+. ....+..||+
T Consensus       126 ~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~-~~~~~~~~~~  181 (382)
T PRK11128        126 IGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASM-LLGQLLRPTI  181 (382)
T ss_pred             ccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHH-HHHHHccCCC
Confidence            3445566666666777777777777776 45556666555443333 2333445664

>TIGR00805 oat sodium-independent organic anion transporter

Probab=85.20  E-value=8.2  Score=26.45  Aligned_cols=28  Identities=11%  Similarity=-0.187  Sum_probs=18.0

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME   29 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~   29 (75)
                      |+...++......++..+...+-..+.+
T Consensus       206 ~~~~~~i~~~~~~iG~~lG~llgg~l~~  233 (633)
T TIGR00805       206 SPLYIGILESIAVFGPAFGYLLGSFCLQ  233 (633)
T ss_pred             cHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence            5677777777777666666655555443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=85.15  E-value=8.7  Score=25.38  Aligned_cols=53  Identities=13%  Similarity=0.046  Sum_probs=34.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHH---HHHHHhccC
Q 035031            4 LAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGV---AFVTFLVPE   56 (75)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~---~~~~~~~pe   56 (75)
                      .+.++......++..+.+.+.+.+.+ .+..+.|++-++...++.   ++...+++|
T Consensus       150 ~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~  206 (500)
T PRK09584        150 GAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQ  206 (500)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhcc
Confidence            45677778889999999999998887 565566666554333332   333444554

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=85.12  E-value=8.4  Score=25.23  Aligned_cols=45  Identities=11%  Similarity=0.024  Sum_probs=33.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHH
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAG   46 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~   46 (75)
                      |+++.++.....+++..+.+.+.+.+.+ .+....|.+.++..+++
T Consensus       139 r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~  184 (475)
T TIGR00924       139 RDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIG  184 (475)
T ss_pred             ccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            5668888889999999999999998887 45556666555444443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=85.12  E-value=8.3  Score=25.47  Aligned_cols=37  Identities=8%  Similarity=-0.052  Sum_probs=28.4

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHH
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSI   38 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   38 (75)
                      |+.+.++......+++++.+.+.|.+.+ .+.++.|++
T Consensus       141 ~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i  178 (489)
T PRK10207        141 LDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNL  178 (489)
T ss_pred             hhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHH
Confidence            3557888888999999999999998888 554455555

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=85.09  E-value=6.6  Score=24.68  Aligned_cols=29  Identities=10%  Similarity=-0.175  Sum_probs=22.8

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMMEW   30 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~   30 (75)
                      |++..++....+.++..+.+.+...+.+.
T Consensus       342 ~g~~~~~~~~~~~~~~~~g~~~~~~l~~~  370 (406)
T PRK15402        342 KGTVSAAMGMLSMLIFTVGIELSKHAYLG  370 (406)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            67788888888888888888877777663

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=83.57  E-value=8.6  Score=24.06  Aligned_cols=46  Identities=11%  Similarity=0.071  Sum_probs=33.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHH
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGV   47 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~   47 (75)
                      |++++++.++...++..+.+.+...+.+ .+....|+..++..+++.
T Consensus       338 ~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~  384 (390)
T TIGR02718       338 AGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAI  384 (390)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence            4677888888889999999999888888 554566665555544443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=82.79  E-value=10  Score=24.31  Aligned_cols=27  Identities=4%  Similarity=-0.213  Sum_probs=20.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHH
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMM   28 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~   28 (75)
                      |++.+++....+.+++.+.+.+.+.+.
T Consensus       128 ~~~~~~~~~~~~~lG~~~g~~i~~~l~  154 (410)
T TIGR00885       128 ATRRLNLAQSFNPFGSIIGMVVAQQLI  154 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456778888888888888888877664

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=82.74  E-value=9.6  Score=24.02  Aligned_cols=57  Identities=12%  Similarity=0.103  Sum_probs=37.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-h-cchHHHHHHHHHHHHHHHHHHHhccCCCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-W-SKTGTFSIFWVICAAGVAFVTFLVPETKG   59 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~f~~~~~~~~~~~~~~~pet~~   59 (75)
                      |+++.++....+.++..+.+.+...+.+ . +....|++.++..++... ..++.||++.
T Consensus       128 r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l-~~~~~~e~~~  186 (402)
T PRK11902        128 RGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGAL-TTLWAPEPEV  186 (402)
T ss_pred             hhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHH-HHHhcCCCcc
Confidence            6777888887777777777777666666 3 445667766666555433 3456777643

>TIGR00788 fbt folate/biopterin transporter

Probab=81.96  E-value=11  Score=24.67  Aligned_cols=47  Identities=13%  Similarity=-0.060  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031           11 FIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETK   58 (75)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~   58 (75)
                      ....++..+.+.+...+.+ .+....|++.++..++. .....++||.+
T Consensus       165 ~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~-~~~~~~~~E~~  212 (468)
T TIGR00788       165 GASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQ-LFVSNLSKERR  212 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHH-HHHHHhccccc
Confidence            3334566666666666666 46666777777776666 44567788875

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=81.56  E-value=1.1  Score=29.06  Aligned_cols=49  Identities=16%  Similarity=0.032  Sum_probs=29.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHH
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVT   51 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~   51 (75)
                      |+.+.++....+.+++.+.++++. ... .+....|++.++..+++.+..+
T Consensus       381 ~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~  430 (476)
T PLN00028        381 LGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVA  430 (476)
T ss_pred             chhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHH
Confidence            566677776666667766666543 111 2234667777777776655543

>PRK03699 putative transporter; Provisional

Probab=81.09  E-value=11  Score=23.66  Aligned_cols=48  Identities=2%  Similarity=-0.137  Sum_probs=34.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHH
Q 035031            3 GLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFV   50 (75)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~   50 (75)
                      ++..+.......++..+.+.+...+.+ .+....++..++...+..+.+
T Consensus       328 ~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~  376 (394)
T PRK03699        328 PKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMC  376 (394)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHH
Confidence            455667777777888888888888887 666667776666666655443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=80.40  E-value=13  Score=24.32  Aligned_cols=55  Identities=13%  Similarity=0.096  Sum_probs=34.1

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhcc
Q 035031            1 MKGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVP   55 (75)
Q Consensus         1 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~p   55 (75)
                      .|++.+|+.....-+++.+.+.+.....+ .+..+.|...++..++..+..++..|
T Consensus       414 ~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (475)
T TIGR00924       414 LMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP  469 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            37788888888877878777777765554 33344555555555555454444333

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=80.37  E-value=16  Score=25.24  Aligned_cols=27  Identities=19%  Similarity=0.336  Sum_probs=16.6

Q ss_pred             cchHHHHHHHHHHHHHHHHHH-HhccCC
Q 035031           31 SKTGTFSIFWVICAAGVAFVT-FLVPET   57 (75)
Q Consensus        31 ~~~~~~~~f~~~~~~~~~~~~-~~~pet   57 (75)
                      +..|.|++++++..++++.++ ++-|.+
T Consensus       194 ~WRw~~~~~~i~~~i~~vl~~~fY~PP~  221 (599)
T PF06609_consen  194 GWRWIFYIFIIWSGIALVLIFFFYFPPP  221 (599)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            345788888887777666533 334443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1

Probab=80.02  E-value=6.9  Score=20.65  Aligned_cols=23  Identities=13%  Similarity=-0.091  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHhccCCCCCCHHH
Q 035031           42 ICAAGVAFVTFLVPETKGRTLEE   64 (75)
Q Consensus        42 ~~~~~~~~~~~~~pet~~~~~~~   64 (75)
                      ++++...+.+.+.|||.-.+-.+
T Consensus        69 ~~~v~~~~~~~y~PD~~i~~WA~   91 (105)
T PF10183_consen   69 GSLVFGGVFLAYKPDTSIQTWAR   91 (105)
T ss_pred             HHHHHHHHHHHcCCCCCHHHHHH
Confidence            33444444555789999877654

6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	75
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.73
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	97.35
2xut_A	524	Proton/peptide symporter family protein; transport	97.1
2cfq_A	417	Lactose permease; transport, transport mechanism,	96.71
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	96.61
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	96.09
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	95.49
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	94.09
2xut_A	524	Proton/peptide symporter family protein; transport	90.92
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	90.44
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	87.21

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.73  E-value=6.6e-18  Score=104.72  Aligned_cols=74  Identities=26%  Similarity=0.416  Sum_probs=63.0

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHH-------hcchHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhhcc
Q 035031            1 MKGLAGSLVIFIHHCINWTITFTFHFMME-------WSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEEIQASITKLS   73 (75)
Q Consensus         1 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~f~~~~~~~~~~~~~~~pet~~~~~~~~~~~~~~~~   73 (75)
                      +|+++++++...+|+++++.++++|.+.+       .+....|++++++++++.+++++++||||||++||+|+.+++++
T Consensus       403 ~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~  482 (491)
T 4gc0_A          403 IRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPET  482 (491)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCC
Confidence            58999999999999999999999998754       23346789999999999999999999999999999999997764


Q ss_pred             C
Q 035031           74 R   74 (75)
Q Consensus        74 ~   74 (75)
                      +
T Consensus       483 ~  483 (491)
T 4gc0_A          483 K  483 (491)
T ss_dssp             -
T ss_pred             c
Confidence            3

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=97.35  E-value=0.00026  Score=43.83  Aligned_cols=62  Identities=13%  Similarity=-0.003  Sum_probs=45.0

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccCCCCCCH
Q 035031            1 MKGLAGSLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGRTL   62 (75)
Q Consensus         1 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~pet~~~~~   62 (75)
                      .|++++++....++++.++.+.+.+.+.+.+....|..+++.+++..+..+++.++++++..
T Consensus       419 ~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  480 (491)
T 4aps_A          419 FNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQGLMQ  480 (491)
T ss_dssp             CSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC---------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            47899999999999999999999887776666678888888888888888877788776543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=97.10  E-value=0.0005  Score=42.98  Aligned_cols=66  Identities=9%  Similarity=-0.092  Sum_probs=39.0

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHH-hc----------c-hHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHH
Q 035031            1 MKGLAGSLVIFIHHCINWTITFTFHFMME-WS----------K-TGTFSIFWVICAAGVAFVTFLVPETKGRTLEEIQ   66 (75)
Q Consensus         1 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------~-~~~~~~f~~~~~~~~~~~~~~~pet~~~~~~~~~   66 (75)
                      .|++++|+.....++++.+.+.+.+.+.+ .+          . ...|+++++..++..+..+++.+++++++.++.+
T Consensus       438 ~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  515 (524)
T 2xut_A          438 MKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSYQMQDHYRQA  515 (524)
T ss_dssp             CCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC---------------
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhhh
Confidence            38899999999999999999999987765 11          0 1236677777777777777777888887766544

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=96.71  E-value=0.0017  Score=39.77  Aligned_cols=61  Identities=10%  Similarity=0.061  Sum_probs=46.3

Q ss_pred             cchhHHHH-HHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCCCCH
Q 035031            2 KGLAGSLV-IFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGRTL   62 (75)
Q Consensus         2 R~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~~~~   62 (75)
                      |+++.+++ ...+++++.+.+.+.+.+.+ .+....|.+.++..+++.+..++..||+|..++
T Consensus       346 ~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~  408 (417)
T 2cfq_A          346 SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL  408 (417)
T ss_dssp             HHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTCS
T ss_pred             HHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchHH
Confidence            56677774 67778999999999998887 555567777788888877777777788776554

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=96.61  E-value=0.00085  Score=40.89  Aligned_cols=52  Identities=10%  Similarity=0.107  Sum_probs=42.6

Q ss_pred             cchhHHHHHHHHHH-HHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHh
Q 035031            2 KGLAGSLVIFIHHC-INWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFL   53 (75)
Q Consensus         2 R~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~   53 (75)
                      |+++.++......+ +..+.+.+...+.+ .+....+++.++..+++.+..++.
T Consensus       380 ~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          380 AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            68899999999999 99999999999988 566678888887777776665543

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=96.09  E-value=0.016  Score=35.20  Aligned_cols=58  Identities=12%  Similarity=0.015  Sum_probs=45.8

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hc-chHHHHHHHHHHHHHHHHHHHhccCCCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WS-KTGTFSIFWVICAAGVAFVTFLVPETKG   59 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~f~~~~~~~~~~~~~~~pet~~   59 (75)
                      |++++++......++..+.+.+...+.+ .+ ..+.|++.++..++..+..++++||++.
T Consensus       153 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~  212 (451)
T 1pw4_A          153 RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ  212 (451)
T ss_dssp             HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence            6788888888888888888888877666 55 6677888888888777777788888654

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=95.49  E-value=0.0088  Score=35.75  Aligned_cols=59  Identities=17%  Similarity=0.164  Sum_probs=42.9

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGR   60 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~~   60 (75)
                      |++++++......++..+.+.+...+.+ .+....+++.++...+..+..++++||++..
T Consensus       122 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (375)
T 2gfp_A          122 LRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPV  181 (375)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence            7788888888888888888888777665 4545667767776666666566678887543

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=94.09  E-value=0.47  Score=29.25  Aligned_cols=54  Identities=13%  Similarity=-0.012  Sum_probs=36.0

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhcc
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVP   55 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~p   55 (75)
                      |+.+.++......++..+.+.+...+.+ .+..+.|++.++..++..+..++..|
T Consensus       144 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  198 (491)
T 4aps_A          144 RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGK  198 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            4455666668888888888888888777 55566777766666655555444333

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=90.92  E-value=1.2  Score=27.78  Aligned_cols=50  Identities=16%  Similarity=0.239  Sum_probs=31.4

Q ss_pred             cchhHHH---HHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHH
Q 035031            2 KGLAGSL---VIFIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVT   51 (75)
Q Consensus         2 R~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~   51 (75)
                      |+++.+.   ......++..+.+.+...+.+ .+..+.|++.++..++..+..+
T Consensus       143 r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  196 (524)
T 2xut_A          143 KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW  196 (524)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence            4444444   777777777777777777776 4555667666666555544443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=90.44  E-value=1.6  Score=26.31  Aligned_cols=27  Identities=4%  Similarity=-0.182  Sum_probs=23.1

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHH
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMM   28 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~   28 (75)
                      |++++++......++..+.+.+...+.
T Consensus       151 r~~~~~~~~~~~~~g~~~g~~~~~~l~  177 (438)
T 3o7q_A          151 GHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677788899999999999988888777

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=87.21  E-value=1.2  Score=26.90  Aligned_cols=39  Identities=10%  Similarity=-0.015  Sum_probs=27.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHH-hc-chHHHHHHHHH
Q 035031            3 GLAGSLVIFIHHCINWTITFTFHFMME-WS-KTGTFSIFWVI   42 (75)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~f~~~   42 (75)
                      +.+.++.. .++++..+.+.+...+.+ .+ ....|++.++.
T Consensus       381 ~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~  421 (438)
T 3o7q_A          381 KYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALC  421 (438)
T ss_dssp             HHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHH
T ss_pred             cchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            45566666 677889999999998888 55 55566554433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	75
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	97.6
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	96.81
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	94.93
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	93.22

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=97.60  E-value=0.00027  Score=40.36  Aligned_cols=63  Identities=10%  Similarity=0.058  Sum_probs=50.7

Q ss_pred             cchhHHHHH-HHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccCCCCCCHHH
Q 035031            2 KGLAGSLVI-FIHHCINWTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPETKGRTLEE   64 (75)
Q Consensus         2 R~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pet~~~~~~~   64 (75)
                      |+++.++.. ..+.++..+.+.+...+.+ .+....|++.+++.++..+...+.+++++..++++
T Consensus       346 ~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r  410 (417)
T d1pv7a_         346 SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR  410 (417)
T ss_dssp             HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhH
Confidence            567777654 4566888899999999988 77778888999998888888888888888888754

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=96.81  E-value=0.00041  Score=40.54  Aligned_cols=55  Identities=9%  Similarity=0.087  Sum_probs=39.9

Q ss_pred             cchhHHHHHHHHHHHH-HHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHhccC
Q 035031            2 KGLAGSLVIFIHHCIN-WTITFTFHFMME-WSKTGTFSIFWVICAAGVAFVTFLVPE   56 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~pe   56 (75)
                      |++++|+....+++++ .+.+.+...+.+ .+....+++.++..+++.+..++..++
T Consensus       377 ~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  433 (447)
T d1pw4a_         377 AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIG  433 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6778888888888755 445777888888 666677777777777777766655543

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=94.93  E-value=0.0043  Score=36.04  Aligned_cols=57  Identities=12%  Similarity=0.019  Sum_probs=40.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-h-cchHHHHHHHHHHHHHHHHHHHhccCCC
Q 035031            2 KGLAGSLVIFIHHCINWTITFTFHFMME-W-SKTGTFSIFWVICAAGVAFVTFLVPETK   58 (75)
Q Consensus         2 R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~f~~~~~~~~~~~~~~~pet~   58 (75)
                      |++++++......++..+.+.+...... . +..+.+++.+....+..+..+++++|++
T Consensus       150 r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (447)
T d1pw4a_         150 RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTP  208 (447)
T ss_dssp             HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSS
T ss_pred             ccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccch
Confidence            6778888888888888887777776665 3 3345677777777777777777776653

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=93.22  E-value=0.17  Score=28.24  Aligned_cols=56  Identities=5%  Similarity=-0.166  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccCCCCCCH
Q 035031            7 SLVIFIHHCINWTITFTFHFMMEWSKTGTFSIFWVICAAGVAFVTFLVPETKGRTL   62 (75)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~pet~~~~~   62 (75)
                      +...........+.+.+...+.+...+..+........+..+..++..||+.....
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (417)
T d1pv7a_         141 GRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSAT  196 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSC
T ss_pred             HHHhhhhccccccccccccccccccccccccchhhHHHHHHHHHHHHhcccccchh
Confidence            33444444444555555555555555566666666666666667777777655443