Citrus Sinensis ID: 035051
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 75 | ||||||
| 255574282 | 76 | conserved hypothetical protein [Ricinus | 1.0 | 0.986 | 0.815 | 1e-27 | |
| 225465471 | 76 | PREDICTED: uncharacterized protein LOC10 | 0.973 | 0.960 | 0.808 | 2e-27 | |
| 356571557 | 76 | PREDICTED: uncharacterized protein LOC10 | 1.0 | 0.986 | 0.815 | 1e-26 | |
| 356561740 | 77 | PREDICTED: uncharacterized protein LOC10 | 0.973 | 0.948 | 0.767 | 3e-25 | |
| 388508884 | 75 | unknown [Lotus japonicus] | 0.986 | 0.986 | 0.763 | 3e-23 | |
| 195618670 | 77 | hypothetical protein [Zea mays] gi|41394 | 1.0 | 0.974 | 0.675 | 2e-20 | |
| 116779033 | 75 | unknown [Picea sitchensis] | 0.986 | 0.986 | 0.684 | 4e-20 | |
| 357455711 | 73 | hypothetical protein MTR_3g007670 [Medic | 0.946 | 0.972 | 0.701 | 7e-20 | |
| 297811529 | 76 | hypothetical protein ARALYDRAFT_488243 [ | 0.986 | 0.973 | 0.773 | 1e-19 | |
| 242088499 | 76 | hypothetical protein SORBIDRAFT_09g02574 | 0.986 | 0.973 | 0.688 | 2e-19 |
| >gi|255574282|ref|XP_002528055.1| conserved hypothetical protein [Ricinus communis] gi|223532516|gb|EEF34305.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/76 (81%), Positives = 69/76 (90%), Gaps = 1/76 (1%)
Query: 1 MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRNWLEEESTAASKAAENIKPKE 60
M LTNFI+TVAGVSAVVLLLRSDVKQSA+IFRRNVKHIRNW EEE+ A+SKA+E KPKE
Sbjct: 1 MGLTNFIITVAGVSAVVLLLRSDVKQSAAIFRRNVKHIRNWFEEETAASSKASEKAKPKE 60
Query: 61 LETKIPEKDTPKE-KH 75
LE+KIP+KD PKE KH
Sbjct: 61 LESKIPQKDIPKEDKH 76
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225465471|ref|XP_002268349.1| PREDICTED: uncharacterized protein LOC100256861 [Vitis vinifera] gi|147843005|emb|CAN83318.1| hypothetical protein VITISV_023581 [Vitis vinifera] gi|297744362|emb|CBI37332.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356571557|ref|XP_003553943.1| PREDICTED: uncharacterized protein LOC100797786 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356561740|ref|XP_003549137.1| PREDICTED: uncharacterized protein LOC100527096 [Glycine max] | Back alignment and taxonomy information |
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| >gi|388508884|gb|AFK42508.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
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| >gi|195618670|gb|ACG31165.1| hypothetical protein [Zea mays] gi|413946082|gb|AFW78731.1| hypothetical protein ZEAMMB73_647957 [Zea mays] | Back alignment and taxonomy information |
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| >gi|116779033|gb|ABK21109.1| unknown [Picea sitchensis] | Back alignment and taxonomy information |
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| >gi|357455711|ref|XP_003598136.1| hypothetical protein MTR_3g007670 [Medicago truncatula] gi|355487184|gb|AES68387.1| hypothetical protein MTR_3g007670 [Medicago truncatula] gi|388497210|gb|AFK36671.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|297811529|ref|XP_002873648.1| hypothetical protein ARALYDRAFT_488243 [Arabidopsis lyrata subsp. lyrata] gi|297319485|gb|EFH49907.1| hypothetical protein ARALYDRAFT_488243 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|242088499|ref|XP_002440082.1| hypothetical protein SORBIDRAFT_09g025740 [Sorghum bicolor] gi|241945367|gb|EES18512.1| hypothetical protein SORBIDRAFT_09g025740 [Sorghum bicolor] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 75 | ||||||
| TAIR|locus:505006617 | 76 | AT5G14105 "AT5G14105" [Arabido | 0.986 | 0.973 | 0.64 | 1.3e-20 |
| TAIR|locus:505006617 AT5G14105 "AT5G14105" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 48/75 (64%), Positives = 56/75 (74%)
Query: 1 MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRNWLXXXXXXXXXXXX-NIKPK 59
M LTNFILTVAGV AVV+LLRSDVKQS ++ RRNVKHIR+WL +IKPK
Sbjct: 1 MGLTNFILTVAGVGAVVMLLRSDVKQSVTVLRRNVKHIRHWLEEESSAASSKAAESIKPK 60
Query: 60 ELETKIPEKDTPKEK 74
E+E K+P+KD PKEK
Sbjct: 61 EIEVKVPKKDIPKEK 75
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.132 0.370 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 75 63 0.00091 102 3 11 22 0.39 28
29 0.42 28
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1
No. of states in DFA: 424 (45 KB)
Total size of DFA: 74 KB (2063 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 6.17u 0.16s 6.33t Elapsed: 00:00:00
Total cpu time: 6.17u 0.16s 6.33t Elapsed: 00:00:00
Start: Fri May 10 05:13:32 2013 End: Fri May 10 05:13:32 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 75 | |||
| PF07172 | 95 | GRP: Glycine rich protein family; InterPro: IPR010 | 86.92 | |
| PF12732 | 74 | YtxH: YtxH-like protein; InterPro: IPR024623 This | 84.76 | |
| PF06388 | 146 | DUF1075: Protein of unknown function (DUF1075); In | 81.0 |
| >PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins | Back alignment and domain information |
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Probab=86.92 E-value=0.94 Score=29.83 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=18.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhHH
Q 035051 1 MALTNFILTVAGVSAVVLLLRSDVK 25 (75)
Q Consensus 1 MAlTNFilTvagV~Av~lLlrsDVr 25 (75)
|| |=.+|-++.+-|++||+.|||-
T Consensus 1 Ma-SK~~llL~l~LA~lLlisSeva 24 (95)
T PF07172_consen 1 MA-SKAFLLLGLLLAALLLISSEVA 24 (95)
T ss_pred Cc-hhHHHHHHHHHHHHHHHHhhhh
Confidence 77 4445556678889999999884
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Some of them may be involved in resistance to environmental stress []. |
| >PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria | Back alignment and domain information |
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| >PF06388 DUF1075: Protein of unknown function (DUF1075); InterPro: IPR009432 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
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Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00