Citrus Sinensis ID: 035051


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70-----
MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRNWLEEESTAASKAAENIKPKELETKIPEKDTPKEKH
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccc
MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRNWLEEESTAASKAaenikpkeletkipekdtpkekh
MALTNFILTVAGVSAVVLLLRsdvkqsasifrrNVKHIRNWLEeestaaskaaenikpkeletkipekdtpkekh
MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRNWLeeestaaskaaeNIKPKELETKIPEKDTPKEKH
**LTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRNWL*********************************
*ALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRNW**********************************
MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRNWLEEESTAASKAAENIKPKELETKIP*********
MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRNWLEEEST****************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRNWLEEESTAASKAAENIKPKELETKIPEKDTPKEKH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query75
25557428276 conserved hypothetical protein [Ricinus 1.0 0.986 0.815 1e-27
22546547176 PREDICTED: uncharacterized protein LOC10 0.973 0.960 0.808 2e-27
35657155776 PREDICTED: uncharacterized protein LOC10 1.0 0.986 0.815 1e-26
35656174077 PREDICTED: uncharacterized protein LOC10 0.973 0.948 0.767 3e-25
38850888475 unknown [Lotus japonicus] 0.986 0.986 0.763 3e-23
19561867077 hypothetical protein [Zea mays] gi|41394 1.0 0.974 0.675 2e-20
11677903375 unknown [Picea sitchensis] 0.986 0.986 0.684 4e-20
35745571173 hypothetical protein MTR_3g007670 [Medic 0.946 0.972 0.701 7e-20
29781152976 hypothetical protein ARALYDRAFT_488243 [ 0.986 0.973 0.773 1e-19
24208849976 hypothetical protein SORBIDRAFT_09g02574 0.986 0.973 0.688 2e-19
>gi|255574282|ref|XP_002528055.1| conserved hypothetical protein [Ricinus communis] gi|223532516|gb|EEF34305.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  126 bits (317), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/76 (81%), Positives = 69/76 (90%), Gaps = 1/76 (1%)

Query: 1  MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRNWLEEESTAASKAAENIKPKE 60
          M LTNFI+TVAGVSAVVLLLRSDVKQSA+IFRRNVKHIRNW EEE+ A+SKA+E  KPKE
Sbjct: 1  MGLTNFIITVAGVSAVVLLLRSDVKQSAAIFRRNVKHIRNWFEEETAASSKASEKAKPKE 60

Query: 61 LETKIPEKDTPKE-KH 75
          LE+KIP+KD PKE KH
Sbjct: 61 LESKIPQKDIPKEDKH 76




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465471|ref|XP_002268349.1| PREDICTED: uncharacterized protein LOC100256861 [Vitis vinifera] gi|147843005|emb|CAN83318.1| hypothetical protein VITISV_023581 [Vitis vinifera] gi|297744362|emb|CBI37332.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356571557|ref|XP_003553943.1| PREDICTED: uncharacterized protein LOC100797786 [Glycine max] Back     alignment and taxonomy information
>gi|356561740|ref|XP_003549137.1| PREDICTED: uncharacterized protein LOC100527096 [Glycine max] Back     alignment and taxonomy information
>gi|388508884|gb|AFK42508.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|195618670|gb|ACG31165.1| hypothetical protein [Zea mays] gi|413946082|gb|AFW78731.1| hypothetical protein ZEAMMB73_647957 [Zea mays] Back     alignment and taxonomy information
>gi|116779033|gb|ABK21109.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|357455711|ref|XP_003598136.1| hypothetical protein MTR_3g007670 [Medicago truncatula] gi|355487184|gb|AES68387.1| hypothetical protein MTR_3g007670 [Medicago truncatula] gi|388497210|gb|AFK36671.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|297811529|ref|XP_002873648.1| hypothetical protein ARALYDRAFT_488243 [Arabidopsis lyrata subsp. lyrata] gi|297319485|gb|EFH49907.1| hypothetical protein ARALYDRAFT_488243 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|242088499|ref|XP_002440082.1| hypothetical protein SORBIDRAFT_09g025740 [Sorghum bicolor] gi|241945367|gb|EES18512.1| hypothetical protein SORBIDRAFT_09g025740 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query75
TAIR|locus:50500661776 AT5G14105 "AT5G14105" [Arabido 0.986 0.973 0.64 1.3e-20
TAIR|locus:505006617 AT5G14105 "AT5G14105" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 48/75 (64%), Positives = 56/75 (74%)

Query:     1 MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNVKHIRNWLXXXXXXXXXXXX-NIKPK 59
             M LTNFILTVAGV AVV+LLRSDVKQS ++ RRNVKHIR+WL             +IKPK
Sbjct:     1 MGLTNFILTVAGVGAVVMLLRSDVKQSVTVLRRNVKHIRHWLEEESSAASSKAAESIKPK 60

Query:    60 ELETKIPEKDTPKEK 74
             E+E K+P+KD PKEK
Sbjct:    61 EIEVKVPKKDIPKEK 75


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.132   0.370    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       75        63   0.00091  102 3  11 22  0.39    28
                                                     29  0.42    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  424 (45 KB)
  Total size of DFA:  74 KB (2063 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  6.17u 0.16s 6.33t   Elapsed:  00:00:00
  Total cpu time:  6.17u 0.16s 6.33t   Elapsed:  00:00:00
  Start:  Fri May 10 05:13:32 2013   End:  Fri May 10 05:13:32 2013


GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 75
PF0717295 GRP: Glycine rich protein family; InterPro: IPR010 86.92
PF1273274 YtxH: YtxH-like protein; InterPro: IPR024623 This 84.76
PF06388146 DUF1075: Protein of unknown function (DUF1075); In 81.0
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins Back     alignment and domain information
Probab=86.92  E-value=0.94  Score=29.83  Aligned_cols=24  Identities=33%  Similarity=0.429  Sum_probs=18.1

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHhHH
Q 035051            1 MALTNFILTVAGVSAVVLLLRSDVK   25 (75)
Q Consensus         1 MAlTNFilTvagV~Av~lLlrsDVr   25 (75)
                      || |=.+|-++.+-|++||+.|||-
T Consensus         1 Ma-SK~~llL~l~LA~lLlisSeva   24 (95)
T PF07172_consen    1 MA-SKAFLLLGLLLAALLLISSEVA   24 (95)
T ss_pred             Cc-hhHHHHHHHHHHHHHHHHhhhh
Confidence            77 4445556678889999999884



Some of them may be involved in resistance to environmental stress [].

>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria Back     alignment and domain information
>PF06388 DUF1075: Protein of unknown function (DUF1075); InterPro: IPR009432 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00