Citrus Sinensis ID: 035053

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70----
Protein Sequence
MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI
Secondary Structure (PSIPRED)
cHHHHHHccEEEcccEEEcccEEEEEEEEEEEEEEEEEEEcccccHHHHHHHHHHccccccccccEEEEEEEcc
Secondary Structure Prediction (SSPRO)
HHHHHHHHHccccccEEEEEEEEEEEEccEEEEEEEEEEEcccccHHHHHHHHcccccHHHHHEEcEEEEEccc
Coil and Loop (DISEMBL)
MKKLEEAVRSvempglfwgasklvpvgygiKKLQIMITIVDDLVSVDSLIeehltvepcneyvqsCDIVAFNKI
Flexible Loop (DISEMBL)
MKKLEEAVRsvempglfwgasKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHltvepcneyvqscdivafnki
Low Complexity Region (SEG)
MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI
Disordered region (IsUnstruct)
***********EMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAF***
Disordered Region (DISOPRED)
******AVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI
Disordered Region (DISEMBL)
********RSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI
Disordered Region (DISPRO)
****EEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	74	2.2.26 [Sep-21-2011]
P29545	224	Elongation factor 1-beta	yes	no	1.0	0.330	0.905	2e-32
Q9SI20	231	Elongation factor 1-delta	yes	no	1.0	0.320	0.864	7e-32
P48006	231	Elongation factor 1-delta	no	no	1.0	0.320	0.851	2e-31
Q84WM9	228	Elongation factor 1-beta	no	no	1.0	0.324	0.864	2e-31
Q9SCX3	224	Elongation factor 1-beta	no	no	1.0	0.330	0.864	4e-31
Q40680	229	Elongation factor 1-delta	no	no	1.0	0.323	0.824	2e-30
P93447	226	Elongation factor 1-delta	N/A	no	1.0	0.327	0.810	4e-30
Q40682	226	Elongation factor 1-delta	no	no	1.0	0.327	0.810	1e-29
O81918	231	Elongation factor 1-delta	N/A	no	1.0	0.320	0.851	3e-29
P29546	216	Elongation factor 1-beta	N/A	no	0.972	0.333	0.783	3e-25

>sp|P29545|EF1B_ORYSJ Elongation factor 1-beta OS=Oryza sativa subsp. japonica GN=Os07g0662500 PE=1 SV=3

 Score =  137 bits (345), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 67/74 (90%), Positives = 70/74 (94%)

Query: 1   MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCN 60
           MKKLEEAVRSV+M GL WGASKLVPVGYGIKKLQIM+TIVDDLVSVDSLIEEHLT EP N
Sbjct: 151 MKKLEEAVRSVQMEGLTWGASKLVPVGYGIKKLQIMLTIVDDLVSVDSLIEEHLTEEPIN 210

Query: 61  EYVQSCDIVAFNKI 74
           E+VQSCDIVAFNKI
Sbjct: 211 EFVQSCDIVAFNKI 224

EF-1-beta and EF-1-beta' stimulate the exchange of GDP bound to EF-1-alpha to GTP.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SI20|EF1D2_ARATH Elongation factor 1-delta 2 OS=Arabidopsis thaliana GN=At2g18110 PE=2 SV=1

 Score =  135 bits (340), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 64/74 (86%), Positives = 69/74 (93%)

Query: 1   MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCN 60
           MKKLEEAVRS++M GLFWGASKLVPVGYGIKKL IM TIVDDLVS+D++IEE LTVEP N
Sbjct: 158 MKKLEEAVRSIQMEGLFWGASKLVPVGYGIKKLHIMCTIVDDLVSIDTMIEEQLTVEPIN 217

Query: 61  EYVQSCDIVAFNKI 74
           EYVQSCDIVAFNKI
Sbjct: 218 EYVQSCDIVAFNKI 231

EF-1-beta and EF-1-delta stimulate the exchange of GDP bound to EF-1-alpha to GTP.

Arabidopsis thaliana (taxid: 3702)

>sp|P48006|EF1D1_ARATH Elongation factor 1-delta 1 OS=Arabidopsis thaliana GN=At1g30230 PE=2 SV=2

 Score =  134 bits (337), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 63/74 (85%), Positives = 70/74 (94%)

Query: 1   MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCN 60
           MKKLEEAV+S++M GLFWGASKLVPVGYGIKKLQI+ TIVDDLVS+D++IEE LTVEP N
Sbjct: 158 MKKLEEAVKSIQMEGLFWGASKLVPVGYGIKKLQILCTIVDDLVSIDTMIEEQLTVEPIN 217

Query: 61  EYVQSCDIVAFNKI 74
           EYVQSCDIVAFNKI
Sbjct: 218 EYVQSCDIVAFNKI 231

EF-1-beta and EF-1-delta stimulate the exchange of GDP bound to EF-1-alpha to GTP.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WM9|EF1B1_ARATH Elongation factor 1-beta 1 OS=Arabidopsis thaliana GN=At5g12110 PE=2 SV=2

 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/74 (86%), Positives = 69/74 (93%)

Query: 1   MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCN 60
           MKKLEEAVRSV+MPGL WGASKLVPVGYGIKKL IM+TIVDDLVSVD+LIE+HLT EP N
Sbjct: 155 MKKLEEAVRSVQMPGLTWGASKLVPVGYGIKKLTIMMTIVDDLVSVDNLIEDHLTSEPNN 214

Query: 61  EYVQSCDIVAFNKI 74
           EY+QS DIVAFNKI
Sbjct: 215 EYIQSVDIVAFNKI 228

EF-1-beta and EF-1-delta stimulate the exchange of GDP bound to EF-1-alpha to GTP.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SCX3|EF1B2_ARATH Elongation factor 1-beta 2 OS=Arabidopsis thaliana GN=At5g19510 PE=1 SV=1

 Score =  133 bits (334), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 64/74 (86%), Positives = 67/74 (90%)

Query: 1   MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCN 60
           MKKLEEAVR VEMPGLFWGASKLVPVGYGIKKL IM TIVDDLVS D+LIE+ LT EP N
Sbjct: 151 MKKLEEAVRGVEMPGLFWGASKLVPVGYGIKKLTIMFTIVDDLVSPDNLIEDFLTSEPNN 210

Query: 61  EYVQSCDIVAFNKI 74
           EY+QSCDIVAFNKI
Sbjct: 211 EYIQSCDIVAFNKI 224

EF-1-beta and EF-1-delta stimulate the exchange of GDP bound to EF-1-alpha to GTP.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40680|EF1D1_ORYSJ Elongation factor 1-delta 1 OS=Oryza sativa subsp. japonica GN=Os07g0614500 PE=2 SV=3

 Score =  130 bits (328), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 61/74 (82%), Positives = 67/74 (90%)

Query: 1   MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCN 60
           M KLEEAVR+V+M GL WGASKLVPVGYGIKKLQIM+TIVDDLVSVDSLIE++   EP N
Sbjct: 156 MTKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPAN 215

Query: 61  EYVQSCDIVAFNKI 74
           EY+QSCDIVAFNKI
Sbjct: 216 EYIQSCDIVAFNKI 229

EF-1-beta and EF-1-beta' stimulate the exchange of GDP bound to EF-1-alpha to GTP.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P93447|EF1D_PIMBR Elongation factor 1-delta OS=Pimpinella brachycarpa PE=2 SV=3

 Score =  129 bits (325), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 60/74 (81%), Positives = 67/74 (90%)

Query: 1   MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCN 60
           M KLEEAVRS++M GL WGASKLV VGYGIKKLQIM+TIVDDLVSVD L+E++LT EP N
Sbjct: 153 MTKLEEAVRSIKMDGLLWGASKLVAVGYGIKKLQIMLTIVDDLVSVDDLVEDYLTAEPAN 212

Query: 61  EYVQSCDIVAFNKI 74
           EY+QSCDIVAFNKI
Sbjct: 213 EYIQSCDIVAFNKI 226

EF-1-beta and EF-1-beta' stimulate the exchange of GDP bound to EF-1-alpha to GTP.

Pimpinella brachycarpa (taxid: 45043)

>sp|Q40682|EF1D2_ORYSJ Elongation factor 1-delta 2 OS=Oryza sativa subsp. japonica GN=Os03g0406200 PE=2 SV=3

 Score =  128 bits (322), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 60/74 (81%), Positives = 67/74 (90%)

Query: 1   MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCN 60
           M KLEEAVR+V+M GL WGASKLVPVGYGIKKLQIM+TIVDDLVSVDSLIE++   EP N
Sbjct: 153 MAKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPAN 212

Query: 61  EYVQSCDIVAFNKI 74
           E++QSCDIVAFNKI
Sbjct: 213 EFIQSCDIVAFNKI 226

EF-1-beta and EF-1-beta' stimulate the exchange of GDP bound to EF-1-alpha to GTP.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O81918|EF1D_BETVU Elongation factor 1-delta OS=Beta vulgaris PE=2 SV=3

 Score =  127 bits (318), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 63/74 (85%), Positives = 68/74 (91%)

Query: 1   MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCN 60
           MKKLEEAVRSV+  GL  GASKLVPVGYGIKKL IM+TIVDDLVSVD+LIE++LTVEP N
Sbjct: 158 MKKLEEAVRSVQQEGLTLGASKLVPVGYGIKKLTIMMTIVDDLVSVDNLIEDYLTVEPIN 217

Query: 61  EYVQSCDIVAFNKI 74
           EYVQSCDIVAFNKI
Sbjct: 218 EYVQSCDIVAFNKI 231

EF-1-beta and EF-1-beta' stimulate the exchange of GDP bound to EF-1-alpha to GTP.

Beta vulgaris (taxid: 161934)

>sp|P29546|EF1B_WHEAT Elongation factor 1-beta OS=Triticum aestivum PE=1 SV=2

 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 58/74 (78%), Positives = 63/74 (85%), Gaps = 2/74 (2%)

Query: 1   MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCN 60
           MKKLEEAVRSV+M GL WGASKL+PVGYGIKKLQIM+TI+DDL S  + IEE L   P N
Sbjct: 145 MKKLEEAVRSVQMEGLTWGASKLMPVGYGIKKLQIMLTIIDDLAS--TPIEEVLCEAPIN 202

Query: 61  EYVQSCDIVAFNKI 74
           EYVQSCDIVAFNKI
Sbjct: 203 EYVQSCDIVAFNKI 216

EF-1-beta and EF-1-beta' stimulate the exchange of GDP bound to EF-1-alpha to GTP.

Triticum aestivum (taxid: 4565)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	74
386278566	225	elongation factor 1-beta [Vernicia fordi	1.0	0.328	0.945	2e-33
406870043	224	translation elongation factor EF-1 betac	1.0	0.330	0.932	6e-33
192910732	224	translation elongation factor EF-1 beta	1.0	0.330	0.932	9e-33
356554233	223	PREDICTED: elongation factor 1-beta 1-li	1.0	0.331	0.905	9e-33
255564428	226	elongation factor 1-beta, putative [Rici	1.0	0.327	0.932	2e-32
351724185	223	uncharacterized protein LOC100500082 [Gl	1.0	0.331	0.891	3e-32
224106686	225	predicted protein [Populus trichocarpa]	1.0	0.328	0.918	3e-32
255646535	223	unknown [Glycine max]	1.0	0.331	0.891	3e-32
351724085	224	uncharacterized protein LOC100306132 [Gl	1.0	0.330	0.918	4e-32
356516563	230	PREDICTED: elongation factor 1-delta-lik	1.0	0.321	0.918	5e-32

>gi|386278566|gb|AFJ04515.1| elongation factor 1-beta [Vernicia fordii]

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/74 (94%), Positives = 72/74 (97%)

Query: 1   MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCN 60
           MKKLEEAVRSV+MPGL WGASKLVPVGYGIKKL IM+TIVDDLVSVDSLIEEHLTVEPCN
Sbjct: 152 MKKLEEAVRSVQMPGLLWGASKLVPVGYGIKKLTIMLTIVDDLVSVDSLIEEHLTVEPCN 211

Query: 61  EYVQSCDIVAFNKI 74
           EYVQSCDIVAFNKI
Sbjct: 212 EYVQSCDIVAFNKI 225

Source: Vernicia fordii

Species: Vernicia fordii

Genus: Vernicia

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|406870043|gb|AFS65095.1| translation elongation factor EF-1 betachain [Elaeis guineensis]

 Score =  144 bits (364), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 69/74 (93%), Positives = 72/74 (97%)

Query: 1   MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCN 60
           MKKLEEAVRS+EMPGL WGASKLVPVGYGIKKLQIM+TIVDDLVSVDSLIEEHLTVE C+
Sbjct: 151 MKKLEEAVRSIEMPGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDSLIEEHLTVESCS 210

Query: 61  EYVQSCDIVAFNKI 74
           EYVQSCDIVAFNKI
Sbjct: 211 EYVQSCDIVAFNKI 224

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|192910732|gb|ACF06474.1| translation elongation factor EF-1 beta chain [Elaeis guineensis]

 Score =  144 bits (362), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 69/74 (93%), Positives = 72/74 (97%)

Query: 1   MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCN 60
           MKKLEEAVRS+EMPGL WGASKLVPVGYGIKKLQIM+TIVDDLVSVDSLIEE LTVEPC+
Sbjct: 151 MKKLEEAVRSIEMPGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDSLIEEDLTVEPCS 210

Query: 61  EYVQSCDIVAFNKI 74
           EYVQSCDIVAFNKI
Sbjct: 211 EYVQSCDIVAFNKI 224

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554233|ref|XP_003545453.1| PREDICTED: elongation factor 1-beta 1-like [Glycine max]

 Score =  144 bits (362), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 67/74 (90%), Positives = 72/74 (97%)

Query: 1   MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCN 60
           MKKLEEAVRS+EMPGL WGASKLVPVGYGIKKLQIM+TIVDDLVSVD+L+EE LTVEPCN
Sbjct: 150 MKKLEEAVRSIEMPGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDTLVEERLTVEPCN 209

Query: 61  EYVQSCDIVAFNKI 74
           EY+QSCDIVAFNKI
Sbjct: 210 EYIQSCDIVAFNKI 223

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564428|ref|XP_002523210.1| elongation factor 1-beta, putative [Ricinus communis] gi|223537506|gb|EEF39131.1| elongation factor 1-beta, putative [Ricinus communis]

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/74 (93%), Positives = 72/74 (97%)

Query: 1   MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCN 60
           MKKLEEAVRS+EMPGL WGASKLVPVGYGIKKLQIM+TIVDDLVSVDSLIEE+LTVEP N
Sbjct: 153 MKKLEEAVRSIEMPGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEEYLTVEPYN 212

Query: 61  EYVQSCDIVAFNKI 74
           EYVQSCDIVAFNKI
Sbjct: 213 EYVQSCDIVAFNKI 226

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724185|ref|NP_001236537.1| uncharacterized protein LOC100500082 [Glycine max] gi|255629025|gb|ACU14857.1| unknown [Glycine max]

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 66/74 (89%), Positives = 71/74 (95%)

Query: 1   MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCN 60
           MKKLEE VRS+EMPGL WGASKLVPVGYGIKKLQIM+TIVDDLVSVD+L+EE LTVEPCN
Sbjct: 150 MKKLEETVRSIEMPGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDTLVEERLTVEPCN 209

Query: 61  EYVQSCDIVAFNKI 74
           EY+QSCDIVAFNKI
Sbjct: 210 EYIQSCDIVAFNKI 223

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106686|ref|XP_002314248.1| predicted protein [Populus trichocarpa] gi|118481035|gb|ABK92471.1| unknown [Populus trichocarpa] gi|118486898|gb|ABK95283.1| unknown [Populus trichocarpa] gi|222850656|gb|EEE88203.1| predicted protein [Populus trichocarpa]

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 68/74 (91%), Positives = 72/74 (97%)

Query: 1   MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCN 60
           M +LE+AVRSVEMPGLFWGASKLVPVGYGIKKLQIM+TIVDDLVSVDSLIEE LTVEPCN
Sbjct: 152 MVELEKAVRSVEMPGLFWGASKLVPVGYGIKKLQIMLTIVDDLVSVDSLIEERLTVEPCN 211

Query: 61  EYVQSCDIVAFNKI 74
           EY+QSCDIVAFNKI
Sbjct: 212 EYIQSCDIVAFNKI 225

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646535|gb|ACU23742.1| unknown [Glycine max]

 Score =  142 bits (357), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 66/74 (89%), Positives = 72/74 (97%)

Query: 1   MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCN 60
           MKKLEEAVRS+EMPGL WGASKLVPVGYGIKKL+IM+TIVDDLVSVD+L+EE LTVEPCN
Sbjct: 150 MKKLEEAVRSIEMPGLLWGASKLVPVGYGIKKLRIMMTIVDDLVSVDTLVEERLTVEPCN 209

Query: 61  EYVQSCDIVAFNKI 74
           EY+QSCDIVAFNKI
Sbjct: 210 EYIQSCDIVAFNKI 223

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724085|ref|NP_001238069.1| uncharacterized protein LOC100306132 [Glycine max] gi|255627641|gb|ACU14165.1| unknown [Glycine max]

 Score =  142 bits (357), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 68/74 (91%), Positives = 71/74 (95%)

Query: 1   MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCN 60
           MKKLEEAVRSVEMPGL WGASKLVPVGYGIKKLQIM+TIVDDLVSVD+L+EE LTVEP N
Sbjct: 151 MKKLEEAVRSVEMPGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDTLVEETLTVEPIN 210

Query: 61  EYVQSCDIVAFNKI 74
           EYVQSCDIVAFNKI
Sbjct: 211 EYVQSCDIVAFNKI 224

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516563|ref|XP_003526963.1| PREDICTED: elongation factor 1-delta-like [Glycine max]

 Score =  141 bits (355), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 68/74 (91%), Positives = 71/74 (95%)

Query: 1   MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCN 60
           MKKLEEAVRSV+M GL WGASKLVPVGYGIKKLQIM+TIVDDLVSVD+LIEEHLTVEP N
Sbjct: 157 MKKLEEAVRSVQMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLTVEPIN 216

Query: 61  EYVQSCDIVAFNKI 74
           EYVQSCDIVAFNKI
Sbjct: 217 EYVQSCDIVAFNKI 230

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	74
TAIR|locus:2053144	231	AT2G18110 [Arabidopsis thalian	1.0	0.320	0.864	6.2e-30
TAIR|locus:2009807	260	eEF-1Bb1 "eukaryotic elongatio	1.0	0.284	0.851	7.9e-30
TAIR|locus:2180806	224	AT5G19510 [Arabidopsis thalian	1.0	0.330	0.864	4.4e-29
TAIR|locus:2177038	228	AT5G12110 [Arabidopsis thalian	1.0	0.324	0.864	5.6e-29
ZFIN|ZDB-GENE-040426-2740	267	eef1da "elongation factor-1, d	0.959	0.265	0.648	1.4e-18
UNIPROTKB|E1BZG4	287	EEF1D "Uncharacterized protein	0.959	0.247	0.635	2.2e-18
FB|FBgn0028737	222	Ef1beta "Elongation factor 1 b	0.959	0.319	0.621	3.6e-18
UNIPROTKB|Q5E983	225	EEF1B "Elongation factor 1-bet	0.959	0.315	0.608	5.8e-18
UNIPROTKB|F1NYA9	224	EEF1B2 "Uncharacterized protei	0.959	0.316	0.594	1.6e-17
UNIPROTKB|Q9YGQ1	225	EEF1B "Elongation factor 1-bet	0.959	0.315	0.594	1.6e-17

TAIR|locus:2053144 AT2G18110 [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 64/74 (86%), Positives = 69/74 (93%)

Query:     1 MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCN 60
             MKKLEEAVRS++M GLFWGASKLVPVGYGIKKL IM TIVDDLVS+D++IEE LTVEP N
Sbjct:   158 MKKLEEAVRSIQMEGLFWGASKLVPVGYGIKKLHIMCTIVDDLVSIDTMIEEQLTVEPIN 217

Query:    61 EYVQSCDIVAFNKI 74
             EYVQSCDIVAFNKI
Sbjct:   218 EYVQSCDIVAFNKI 231

GO:0003746 "translation elongation factor activity" evidence=IEA;ISS

GO:0005853 "eukaryotic translation elongation factor 1 complex" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006414 "translational elongation" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2009807 eEF-1Bb1 "eukaryotic elongation factor 1B beta 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 63/74 (85%), Positives = 70/74 (94%)

Query:     1 MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCN 60
             MKKLEEAV+S++M GLFWGASKLVPVGYGIKKLQI+ TIVDDLVS+D++IEE LTVEP N
Sbjct:   158 MKKLEEAVKSIQMEGLFWGASKLVPVGYGIKKLQILCTIVDDLVSIDTMIEEQLTVEPIN 217

Query:    61 EYVQSCDIVAFNKI 74
             EYVQSCDIVAFNKI
Sbjct:   218 EYVQSCDIVAFNKI 231

GO:0003746 "translation elongation factor activity" evidence=IEA;ISS

GO:0005853 "eukaryotic translation elongation factor 1 complex" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006414 "translational elongation" evidence=IEA;ISS

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0009808 "lignin metabolic process" evidence=IMP

GO:0071668 "plant-type cell wall assembly" evidence=IMP

GO:2001006 "regulation of cellulose biosynthetic process" evidence=IMP

TAIR|locus:2180806 AT5G19510 [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 64/74 (86%), Positives = 67/74 (90%)

Query:     1 MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCN 60
             MKKLEEAVR VEMPGLFWGASKLVPVGYGIKKL IM TIVDDLVS D+LIE+ LT EP N
Sbjct:   151 MKKLEEAVRGVEMPGLFWGASKLVPVGYGIKKLTIMFTIVDDLVSPDNLIEDFLTSEPNN 210

Query:    61 EYVQSCDIVAFNKI 74
             EY+QSCDIVAFNKI
Sbjct:   211 EYIQSCDIVAFNKI 224

GO:0003746 "translation elongation factor activity" evidence=IEA;ISS

GO:0005853 "eukaryotic translation elongation factor 1 complex" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006414 "translational elongation" evidence=IEA;ISS

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0048046 "apoplast" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2177038 AT5G12110 [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 64/74 (86%), Positives = 69/74 (93%)

Query:     1 MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCN 60
             MKKLEEAVRSV+MPGL WGASKLVPVGYGIKKL IM+TIVDDLVSVD+LIE+HLT EP N
Sbjct:   155 MKKLEEAVRSVQMPGLTWGASKLVPVGYGIKKLTIMMTIVDDLVSVDNLIEDHLTSEPNN 214

Query:    61 EYVQSCDIVAFNKI 74
             EY+QS DIVAFNKI
Sbjct:   215 EYIQSVDIVAFNKI 228

GO:0003746 "translation elongation factor activity" evidence=IEA;ISS

GO:0005853 "eukaryotic translation elongation factor 1 complex" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006414 "translational elongation" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

ZFIN|ZDB-GENE-040426-2740 eef1da "elongation factor-1, delta, a" [Danio rerio (taxid:7955)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 48/74 (64%), Positives = 54/74 (72%)

Query:     1 MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCN 60
             M KLEE VRSV+M GL WGASKLVPVGYGIKKLQI   + DD V  D ++EE +T     
Sbjct:   197 MSKLEECVRSVQMDGLLWGASKLVPVGYGIKKLQINCVVEDDKVGTD-ILEEEIT--QFE 253

Query:    61 EYVQSCDIVAFNKI 74
             +YVQS DI AFNKI
Sbjct:   254 DYVQSVDIAAFNKI 267

GO:0003746 "translation elongation factor activity" evidence=IEA

GO:0005853 "eukaryotic translation elongation factor 1 complex" evidence=IEA

GO:0006414 "translational elongation" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|E1BZG4 EEF1D "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 47/74 (63%), Positives = 54/74 (72%)

Query:     1 MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCN 60
             M K+EE VRSV+M GL WGASKLVPVGYGIKKLQI   + DD V  D ++EE +T     
Sbjct:   217 MAKMEECVRSVQMDGLVWGASKLVPVGYGIKKLQIQCVVEDDKVGTD-ILEEEIT--KFE 273

Query:    61 EYVQSCDIVAFNKI 74
             +YVQS DI AFNKI
Sbjct:   274 DYVQSVDIAAFNKI 287

GO:0005853 "eukaryotic translation elongation factor 1 complex" evidence=IEA

GO:0003746 "translation elongation factor activity" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA

FB|FBgn0028737 Ef1beta "Elongation factor 1 beta" [Drosophila melanogaster (taxid:7227)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 46/74 (62%), Positives = 55/74 (74%)

Query:     1 MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCN 60
             MK++E  VR++EM GL WGASKLVPVGYGI KLQIM  I DD VS+D L E+   +E   
Sbjct:   152 MKEMENNVRTIEMDGLLWGASKLVPVGYGINKLQIMCVIEDDKVSIDLLQEK---IEEFE 208

Query:    61 EYVQSCDIVAFNKI 74
             ++VQS DI AFNKI
Sbjct:   209 DFVQSVDIAAFNKI 222

GO:0003747 "translation release factor activity" evidence=ISS

GO:0005829 "cytosol" evidence=ISS;NAS

GO:0003746 "translation elongation factor activity" evidence=IEA;ISS;NAS

GO:0005853 "eukaryotic translation elongation factor 1 complex" evidence=IEA;ISS;NAS

GO:0006414 "translational elongation" evidence=IEA;ISS;NAS

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=NAS

GO:0005811 "lipid particle" evidence=IDA

UNIPROTKB|Q5E983 EEF1B "Elongation factor 1-beta" [Bos taurus (taxid:9913)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 45/74 (60%), Positives = 54/74 (72%)

Query:     1 MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCN 60
             M KLEE VRS++  GL WG+SKLVPVGYGIKKLQI   + DD V  D ++EE +T    +
Sbjct:   155 MAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD-MLEEQITA--FD 211

Query:    61 EYVQSCDIVAFNKI 74
             EYVQS D+ AFNKI
Sbjct:   212 EYVQSMDVAAFNKI 225

GO:0003746 "translation elongation factor activity" evidence=IEA

GO:0005853 "eukaryotic translation elongation factor 1 complex" evidence=IEA

UNIPROTKB|F1NYA9 EEF1B2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 44/74 (59%), Positives = 53/74 (71%)

Query:     1 MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCN 60
             M KLEE VRS++  GL WG+SKLVPVGYGIKKLQI   + DD V  D ++EE +T     
Sbjct:   154 MAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD-MLEERITA--FE 210

Query:    61 EYVQSCDIVAFNKI 74
             +YVQS D+ AFNKI
Sbjct:   211 DYVQSMDVAAFNKI 224

GO:0005853 "eukaryotic translation elongation factor 1 complex" evidence=IEA

GO:0003746 "translation elongation factor activity" evidence=IEA

UNIPROTKB|Q9YGQ1 EEF1B "Elongation factor 1-beta" [Gallus gallus (taxid:9031)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 44/74 (59%), Positives = 53/74 (71%)

Query:     1 MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCN 60
             M KLEE VRS++  GL WG+SKLVPVGYGIKKLQI   + DD V  D ++EE +T     
Sbjct:   155 MAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD-MLEEQITA--FE 211

Query:    61 EYVQSCDIVAFNKI 74
             +YVQS D+ AFNKI
Sbjct:   212 DYVQSMDVAAFNKI 225

GO:0005853 "eukaryotic translation elongation factor 1 complex" evidence=IEA

GO:0003746 "translation elongation factor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P29545	EF1B_ORYSJ	No assigned EC number	0.9054	1.0	0.3303	yes	no
Q9SI20	EF1D2_ARATH	No assigned EC number	0.8648	1.0	0.3203	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	74
cd00292	88	cd00292, EF1B, Elongation factor 1 beta (EF1B) gua	1e-23
pfam00736	87	pfam00736, EF1_GNE, EF-1 guanine nucleotide exchan	2e-19
smart00888	88	smart00888, EF1_GNE, EF-1 guanine nucleotide excha	5e-17
COG2092	88	COG2092, EFB1, Translation elongation factor EF-1b	2e-08

>gnl|CDD|238181 cd00292, EF1B, Elongation factor 1 beta (EF1B) guanine nucleotide exchange domain

 Score = 84.6 bits (210), Expect = 1e-23
 Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 4/74 (5%)

Query: 1  MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCN 60
          + +LEE +R++ M GL WG SKL P+ +G+K LQI   + DD    D L E         
Sbjct: 19 LDELEEKIRAILMDGLLWGKSKLEPIAFGLKALQIYCVVEDDEGGTDELEEAISEE---- 74

Query: 61 EYVQSCDIVAFNKI 74
          + VQS D+ AFNK+
Sbjct: 75 DGVQSVDVEAFNKL 88

EF1B catalyzes the exchange of GDP bound to the G-protein, EF1A, for GTP, an important step in the elongation cycle of the protein biosynthesis. EF1A binds to and delivers the aminoacyl tRNA to the ribosome. The guanine nucleotide exchange domain of EF1B, which is the alpha subunit in yeast, is responsible for the catalysis of this exchange reaction. Length = 88

>gnl|CDD|201421 pfam00736, EF1_GNE, EF-1 guanine nucleotide exchange domain

 Score = 73.7 bits (182), Expect = 2e-19
 Identities = 38/76 (50%), Positives = 50/76 (65%), Gaps = 6/76 (7%)

Query: 1  MKKLEEAV-RSVEMPGLFWG-ASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEP 58
          +++LE+ V R + M GL WG ASKL P+ +G+KKLQI   + DD V  D L EE +  E 
Sbjct: 16 LEELEKKVKRKIPMDGLVWGKASKLEPIAFGLKKLQISCVVEDDKVGTDEL-EEAIAFE- 73

Query: 59 CNEYVQSCDIVAFNKI 74
            + VQS DIVAFNK+
Sbjct: 74 --DGVQSVDIVAFNKL 87

This family is the guanine nucleotide exchange domain of EF-1 beta and EF-1 delta chains. Length = 87

>gnl|CDD|214886 smart00888, EF1_GNE, EF-1 guanine nucleotide exchange domain

 Score = 67.9 bits (167), Expect = 5e-17
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 6/76 (7%)

Query: 1  MKKLEEAVRS-VEMPGLFWGAS-KLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEP 58
          +++LEE V+S + M GL WGA  +L P+ +G+K LQI + + DD    D L E    V  
Sbjct: 17 LEELEEKVKSILPMDGLLWGAGIELEPIAFGLKALQIYVVVEDDEGGTDELEEAIEEV-- 74

Query: 59 CNEYVQSCDIVAFNKI 74
            E VQS ++ A +++
Sbjct: 75 --EGVQSVEVEAVSRL 88

Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta). This entry represents the guanine nucleotide exchange domain of the beta (EF-1beta, also known as EF1B-alpha) and delta (EF-1delta, also known as EF1B-beta) chains of EF1B proteins from eukaryotes and archaea. The beta and delta chains have exchange activity, which mainly resides in their homologous guanine nucleotide exchange domains, found in the C-terminal region of the peptides. Their N-terminal regions may be involved in interactions with the gamma chain (EF-1gamma). Length = 88

>gnl|CDD|225003 COG2092, EFB1, Translation elongation factor EF-1beta [Translation, ribosomal structure and biogenesis]

 Score = 46.1 bits (110), Expect = 2e-08
 Identities = 16/74 (21%), Positives = 36/74 (48%), Gaps = 4/74 (5%)

Query: 1  MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCN 60
          +++LEE ++     G      +  P+ +G+K L++ + + D     D+L E    VE   
Sbjct: 19 LEELEEKIKEKLPEGYELIKIEEEPIAFGLKALKLYVVVEDKEGGTDALEEALEEVEG-- 76

Query: 61 EYVQSCDIVAFNKI 74
            V+S ++   +++
Sbjct: 77 --VESVEVENVSRL 88

Length = 88

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	74
KOG1668	231	consensus Elongation factor 1 beta/delta chain [Tr	100.0
cd00292	88	EF1B Elongation factor 1 beta (EF1B) guanine nucle	99.95
PF00736	89	EF1_GNE: EF-1 guanine nucleotide exchange domain;	99.94
PRK00435	88	ef1B elongation factor 1-beta; Validated	99.94
TIGR00489	88	aEF-1_beta translation elongation factor aEF-1 bet	99.88
COG2092	88	EFB1 Translation elongation factor EF-1beta [Trans	99.66

>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]

Probab=100.00  E-value=2.5e-37  Score=226.34  Aligned_cols=71  Identities=70%  Similarity=0.999  Sum_probs=67.5

Q ss_pred             ChHHHHhhhccccCceeeccceeeeeeeeeeeEEEEEEEecCccChhhhhhhhhcccCCCCceeeeeeeccccC
Q 035053            1 MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI   74 (74)
Q Consensus         1 m~~le~~Vr~I~~dGL~WG~sKlvpv~yGikKLqi~cvveDdkVs~ddl~ee~i~~e~~ed~VQS~Di~afnKi   74 (74)
                      |++||++||+|+|+||+||+|||+|||||||||||+|||+|||||+|+|+|++ +.  ||||||||||+|||||
T Consensus       161 m~~~e~~vrsi~~~gl~wgasklvpvGygikKlqi~~vveddkvs~D~l~e~i-~~--~e~~Vqs~di~afnki  231 (231)
T KOG1668|consen  161 MKELEECVRSIEMDGLVWGASKLVPVGYGIKKLQIQCVVEDDKVSIDDLIEEI-TK--FEDHVQSVDIAAFNKI  231 (231)
T ss_pred             HHHHHHHHHHhhhccceeccccccccccceeeEEEEEEEEcCccccchhHHHh-hh--hhcceeeehhhhcccC
Confidence            78999999999999999999999999999999999999999999999998874 33  8999999999999997

>cd00292 EF1B Elongation factor 1 beta (EF1B) guanine nucleotide exchange domain

Probab=99.95  E-value=1.6e-28  Score=157.28  Aligned_cols=70  Identities=44%  Similarity=0.746  Sum_probs=65.0

Q ss_pred             ChHHHHhhhccccCceeeccceeeeeeeeeeeEEEEEEEecCccChhhhhhhhhcccCCCCceeeeeeeccccC
Q 035053            1 MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI   74 (74)
Q Consensus         1 m~~le~~Vr~I~~dGL~WG~sKlvpv~yGikKLqi~cvveDdkVs~ddl~ee~i~~e~~ed~VQS~Di~afnKi   74 (74)
                      |++|+++||++.++||+||+++++|+||||||||+.|+|+|+++|+|++.|. |..   +|+||||||++||||
T Consensus        19 l~~l~~~Ik~~~~~gl~~~~~~~epiaFGlk~L~i~~vv~D~~~~td~lee~-i~~---~d~VqsveI~~~~ki   88 (88)
T cd00292          19 LDELEEKIRAILMDGLLWGKSKLEPIAFGLKALQIYCVVEDDEGGTDELEEA-ISE---EDGVQSVDVEAFNKL   88 (88)
T ss_pred             HHHHHHHHHHhCcCCcEEEEEEEEEeeeEeeEEEEEEEEEeCCcCcHHHHHH-Hhc---cCCceEEEEEEEEeC
Confidence            5789999999999999999999999999999999999999999999998665 444   689999999999996

EF1B catalyzes the exchange of GDP bound to the G-protein, EF1A, for GTP, an important step in the elongation cycle of the protein biosynthesis. EF1A binds to and delivers the aminoacyl tRNA to the ribosome. The guanine nucleotide exchange domain of EF1B, which is the alpha subunit in yeast, is responsible for the catalysis of this exchange reaction.

>PF00736 EF1_GNE: EF-1 guanine nucleotide exchange domain; InterPro: IPR014038 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]

Probab=99.94  E-value=9.1e-28  Score=153.78  Aligned_cols=71  Identities=42%  Similarity=0.695  Sum_probs=63.9

Q ss_pred             ChHHHHhh-hccccCceeec-cceeeeeeeeeeeEEEEEEEecCccChhhhhhhhhcccCCCCceeeeeeeccccC
Q 035053            1 MKKLEEAV-RSVEMPGLFWG-ASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI   74 (74)
Q Consensus         1 m~~le~~V-r~I~~dGL~WG-~sKlvpv~yGikKLqi~cvveDdkVs~ddl~ee~i~~e~~ed~VQS~Di~afnKi   74 (74)
                      |++|+++| |+|+++||+|| +++++|+|||+|+||+.|+++|+++|+|++.+. +  +.+++.||||||.+||||
T Consensus        17 l~~l~~~Ik~~i~~~gl~w~~~~~~epIaFGlk~L~v~~vv~D~~~~~d~lee~-i--~~~~e~Vqsvei~~~~rl   89 (89)
T PF00736_consen   17 LEKLEKKIKRKIPMEGLKWGEKSKEEPIAFGLKALQVSCVVEDDEGSTDDLEEA-I--ESFEEGVQSVEIESFNRL   89 (89)
T ss_dssp             HHHHHHHHHHHS-TTTEEEEEEEEEEEECTTEEEEEEEEEECTTTCGHHHHHHH-H--TTCTTTEEEEEEEEEEE-
T ss_pred             HHHHHHHHHHhchhcceeeeeeeeeeeecccEEEEEEEEEEEcCccChHHHHHH-H--HhcCCCccEEEEEEEEcC
Confidence            57899999 99999999999 799999999999999999999999999998665 4  338999999999999996

EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This entry represents the guanine nucleotide exchange domain of the beta (EF-1beta, also known as EF1B-alpha) and delta (EF-1delta, also known as EF1B-beta) chains of EF1B proteins from eukaryotes and archaea. The beta and delta chains have exchange activity, which mainly resides in their homologous guanine nucleotide exchange domains, found in the C-terminal region of the peptides. Their N-terminal regions may be involved in interactions with the gamma chain (EF-1gamma). More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0003746 translation elongation factor activity, 0006414 translational elongation, 0005853 eukaryotic translation elongation factor 1 complex; PDB: 2YY3_B 1GH8_A 1B64_A 1IJE_B 1IJF_B 1F60_B 1G7C_B 2B7B_B 2B7C_B.

>PRK00435 ef1B elongation factor 1-beta; Validated

Probab=99.94  E-value=2.5e-27  Score=152.23  Aligned_cols=70  Identities=19%  Similarity=0.384  Sum_probs=65.2

Q ss_pred             ChHHHHhhhccccCceeeccceeeeeeeeeeeEEEEEEEecCccChhhhhhhhhcccCCCCceeeeeeeccccC
Q 035053            1 MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI   74 (74)
Q Consensus         1 m~~le~~Vr~I~~dGL~WG~sKlvpv~yGikKLqi~cvveDdkVs~ddl~ee~i~~e~~ed~VQS~Di~afnKi   74 (74)
                      |++|+++||++.++||.||+++++|+|||||+||+.|+++|+++|+|++.|. ++.  ||| |||+||++||++
T Consensus        19 l~~L~~~ik~~~~~g~~~~~~~~ePIaFGLkaL~i~~vv~D~~~~td~lee~-i~~--~e~-Vqsvei~~~~r~   88 (88)
T PRK00435         19 LDELKEKIKEVLPEGYKINGIEEEPIAFGLKALKLYVIMPDEEGGTEPVEEA-FAN--VEG-VESVEVEEVSRI   88 (88)
T ss_pred             HHHHHHHHHHhCcCCcEEeEeEEEEeeccceeEEEEEEEEcCCcCcHHHHHH-Hhc--cCC-CcEEEEEEEecC
Confidence            5789999999999999999999999999999999999999999999987554 555  999 999999999986

>TIGR00489 aEF-1_beta translation elongation factor aEF-1 beta

Probab=99.88  E-value=6.3e-23  Score=131.81  Aligned_cols=70  Identities=16%  Similarity=0.285  Sum_probs=64.3

Q ss_pred             ChHHHHhhhccccCceeeccceeeeeeeeeeeEEEEEEEecCccChhhhhhhhhcccCCCCceeeeeeeccccC
Q 035053            1 MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI   74 (74)
Q Consensus         1 m~~le~~Vr~I~~dGL~WG~sKlvpv~yGikKLqi~cvveDdkVs~ddl~ee~i~~e~~ed~VQS~Di~afnKi   74 (74)
                      |++|++++|++.++|+.||.++.+|+|||+++||+.|+++|+++++|++.+ .+..  +|+ |||+||.+|+++
T Consensus        19 le~L~~~ik~~~~~g~~~~~~~~ePiaFGLkaL~~~~vv~D~~g~td~lee-~i~~--ve~-V~svev~~~~r~   88 (88)
T TIGR00489        19 LEALKEKIKERIPEGVEIRKIDEEPIAFGLVAINVMVVMGDAEGGTEAAEE-SLSG--IEG-VESVEVTDVRLL   88 (88)
T ss_pred             HHHHHHHHHHhCcCCcEEeeeEEEeeeccceeeEEEEEEecCCcChHHHHH-HHhc--CCC-ccEEEEEEEEcC
Confidence            578999999999999999999999999999999999999999999998744 4655  885 999999999986

This model describes the archaeal translation elongation factor aEF-1 beta. The member from Sulfolobus solfataricus was demonstrated experimentally. It is a dimer that catalyzes the exchange of GDP for GTP on aEF-1 alpha.

>COG2092 EFB1 Translation elongation factor EF-1beta [Translation, ribosomal structure and biogenesis]

Probab=99.66  E-value=1.4e-16  Score=103.07  Aligned_cols=70  Identities=21%  Similarity=0.368  Sum_probs=60.7

Q ss_pred             ChHHHHhhhccccCceeeccceeeeeeeeeeeEEEEEEEecCccChhhhhhhhhcccCCCCceeeeeeeccccC
Q 035053            1 MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI   74 (74)
Q Consensus         1 m~~le~~Vr~I~~dGL~WG~sKlvpv~yGikKLqi~cvveDdkVs~ddl~ee~i~~e~~ed~VQS~Di~afnKi   74 (74)
                      +++|++.||++.++|+.|+.+..+|+|||+|+|++.|+++|.--++|++.+. +..  +++ |||++++++++|
T Consensus        19 l~~L~~~ik~~l~~g~~~~~~~~epIaFGLkal~l~vvv~D~Eg~td~~ee~-l~~--veg-V~sveve~vsrl   88 (88)
T COG2092          19 LEELEEKIKEKLPEGYELIKIEEEPIAFGLKALKLYVVVEDKEGGTDALEEA-LEE--VEG-VESVEVENVSRL   88 (88)
T ss_pred             HHHHHHHHHHhccccceeccceeEeeeeeeeeEEEEEEEcccccCcHHHHHH-Hhh--ccC-cceEEEEEEEeC
Confidence            4789999999999999999999999999999999999995555559987554 444  877 999999999876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	74
1b64_A	91	Solution Structure Of The Guanine Nucleotide Exchan		1e-17
1f60_B	94	Crystal Structure Of The Yeast Elongation Factor Co		3e-12
1ije_B	90	Nucleotide Exchange Intermediates In The Eef1a-eef1		3e-12
2b7b_B	94	Yeast Guanine Nucleotide Exchange Factor Eef1balpha		2e-11

>pdb|1B64|A Chain A, Solution Structure Of The Guanine Nucleotide Exchange Factor Domain From Human Elongation Factor-One Beta, Nmr, 20 Structures Length = 91

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/74 (59%), Positives = 53/74 (71%), Gaps = 3/74 (4%)
Query: 1  MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCN 60
          M KLEE VRS++  GL WG+SKLVPVGYGIKKLQI   + DD V  D ++EE +T     
Sbjct: 21 MAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD-MLEEQIT--AFE 77
Query: 61 EYVQSCDIVAFNKI 74
          +YVQS D+ AFNKI
Sbjct: 78 DYVQSMDVAAFNKI 91

>pdb|1F60|B Chain B, Crystal Structure Of The Yeast Elongation Factor Complex Eef1a:eef1ba Length = 94

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 45/67 (67%), Gaps = 3/67 (4%)
Query: 8  VRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCNEYVQSCD 67
          V+++EM GL WGA + +P+G+GIKKLQI   + DD VS+D L     ++E   ++VQS D
Sbjct: 31 VKAIEMEGLTWGAHQFIPIGFGIKKLQINCVVEDDKVSLDDL---QQSIEEDEDHVQSTD 87
Query: 68 IVAFNKI 74
          I A  K+
Sbjct: 88 IAAMQKL 94

>pdb|1IJE|B Chain B, Nucleotide Exchange Intermediates In The Eef1a-eef1ba Complex Length = 90

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 45/67 (67%), Gaps = 3/67 (4%)
Query: 8  VRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCNEYVQSCD 67
          V+++EM GL WGA + +P+G+GIKKLQI   + DD VS+D L     ++E   ++VQS D
Sbjct: 27 VKAIEMEGLTWGAHQFIPIGFGIKKLQINCVVEDDKVSLDDL---QQSIEEDEDHVQSTD 83
Query: 68 IVAFNKI 74
          I A  K+
Sbjct: 84 IAAMQKL 90

>pdb|2B7B|B Chain B, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a Mutant In Complex With Eef1a And Gdp Length = 94

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 3/67 (4%)
Query: 8  VRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCNEYVQSCD 67
          V+++EM GL WGA + +P+G+GIKKLQI   + DD VS+D L     ++E   ++VQS D
Sbjct: 31 VKAIEMEGLTWGAHQFIPIGFGIKKLQINCVVEDDKVSLDDL---QQSIEEDEDHVQSTD 87
Query: 68 IVAFNKI 74
          I A   +
Sbjct: 88 IAAMQAL 94
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	74
1f60_B	94	Elongation factor EEF1BA; protein-protein complex,	5e-30
1b64_A	91	Elongation factor 1-beta; guanine nucleotide excha	1e-29
1gh8_A	89	Translation elongation factor 1BETA; alpha-beta sa	2e-14
2yy3_A	91	Elongation factor 1-beta; structural genomics, NPP	4e-09

>1f60_B Elongation factor EEF1BA; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: d.58.12.1 PDB: 1g7c_B* 2b7c_B 2b7b_B 1ije_B* 1ijf_B* Length = 94

 Score =  100 bits (251), Expect = 5e-30
 Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 3/74 (4%)

Query: 1  MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCN 60
          ++++   V+++EM GL WGA + +P+G+GIKKLQI   + DD VS+D L +    +E   
Sbjct: 24 LEEMVANVKAIEMEGLTWGAHQFIPIGFGIKKLQINCVVEDDKVSLDDLQQS---IEEDE 80

Query: 61 EYVQSCDIVAFNKI 74
          ++VQS DI A  K+
Sbjct: 81 DHVQSTDIAAMQKL 94

>1b64_A Elongation factor 1-beta; guanine nucleotide exchange factor, G-protein, translation elongation; NMR {Homo sapiens} SCOP: d.58.12.1 Length = 91

 Score = 99.5 bits (248), Expect = 1e-29
 Identities = 44/74 (59%), Positives = 51/74 (68%), Gaps = 3/74 (4%)

Query: 1  MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCN 60
          M KLEE VRS++  GL WG+SKLVPVGYGIKKLQI   + DD V  D L E+    E   
Sbjct: 21 MAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQITAFE--- 77

Query: 61 EYVQSCDIVAFNKI 74
          +YVQS D+ AFNKI
Sbjct: 78 DYVQSMDVAAFNKI 91

>1gh8_A Translation elongation factor 1BETA; alpha-beta sandwich, gene regulation, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.58.12.1 Length = 89

 Score = 60.5 bits (147), Expect = 2e-14
 Identities = 10/74 (13%), Positives = 30/74 (40%), Gaps = 4/74 (5%)

Query: 1  MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCN 60
          ++ L++ ++     G         P+ +G+  L +M+ + D     ++  E    +E   
Sbjct: 19 LEALKKEIQERIPEGTELHKIDEEPIAFGLVALNVMVVVGDAEGGTEAAEESLSGIEG-- 76

Query: 61 EYVQSCDIVAFNKI 74
            V + ++    ++
Sbjct: 77 --VSNIEVTDVRRL 88

>2yy3_A Elongation factor 1-beta; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 2.50A {Pyrococcus horikoshii} Length = 91

 Score = 47.4 bits (113), Expect = 4e-09
 Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 3/74 (4%)

Query: 1  MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCN 60
          + +LEE ++ V          +  P+ +G+  L+  +   D+       + E        
Sbjct: 21 LDELEEKLKKVIPEKYGLAKVEREPIAFGLVALKFYVLGRDEEGYSFDEVAEKFEEV--- 77

Query: 61 EYVQSCDIVAFNKI 74
          E V+S ++   ++I
Sbjct: 78 ENVESAEVETVSRI 91

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	74
1b64_A	91	Elongation factor 1-beta; guanine nucleotide excha	100.0
1f60_B	94	Elongation factor EEF1BA; protein-protein complex,	100.0
1gh8_A	89	Translation elongation factor 1BETA; alpha-beta sa	99.97
2yy3_A	91	Elongation factor 1-beta; structural genomics, NPP	99.97

>1b64_A Elongation factor 1-beta; guanine nucleotide exchange factor, G-protein, translation elongation; NMR {Homo sapiens} SCOP: d.58.12.1

Probab=100.00  E-value=6.9e-35  Score=187.17  Aligned_cols=71  Identities=62%  Similarity=0.951  Sum_probs=67.0

Q ss_pred             ChHHHHhhhccccCceeeccceeeeeeeeeeeEEEEEEEecCccChhhhhhhhhcccCCCCceeeeeeeccccC
Q 035053            1 MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI   74 (74)
Q Consensus         1 m~~le~~Vr~I~~dGL~WG~sKlvpv~yGikKLqi~cvveDdkVs~ddl~ee~i~~e~~ed~VQS~Di~afnKi   74 (74)
                      |++|+++||++++|||.||++|++|+||||||||+.|+++||++|+|+|.|+ |+.  |||+||||||++||||
T Consensus        21 l~~L~~~Vr~i~~~Gl~wg~~k~~piafGikkL~i~~vveDd~v~tD~lee~-i~~--~ed~VqSvdI~~~~ki   91 (91)
T 1b64_A           21 MAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQ-ITA--FEDYVQSMDVAAFNKI   91 (91)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEEEEEESSSSCEEEEEEEEECTTSSCHHHHHHH-HTT--CTTTEEEEEESCCBCC
T ss_pred             HHHHHHHHHHhCcCCcEEEEEEEEEEEeeEEEEEEEEEEECCccChHHHHHH-HHh--ccCceeEEEEEEEEcC
Confidence            6899999999999999999999999999999999999999999999998665 555  9999999999999997

>1f60_B Elongation factor EEF1BA; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: d.58.12.1 PDB: 1g7c_B* 2b7c_B 2b7b_B 1ije_B* 1ijf_B*

Probab=100.00  E-value=1.4e-34  Score=186.80  Aligned_cols=71  Identities=42%  Similarity=0.750  Sum_probs=67.1

Q ss_pred             ChHHHHhhhccccCceeeccceeeeeeeeeeeEEEEEEEecCccChhhhhhhhhcccCCCCceeeeeeeccccC
Q 035053            1 MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI   74 (74)
Q Consensus         1 m~~le~~Vr~I~~dGL~WG~sKlvpv~yGikKLqi~cvveDdkVs~ddl~ee~i~~e~~ed~VQS~Di~afnKi   74 (74)
                      |++|+++||++++|||+||++|++|+||||+|||++|+|+||++|+|+|.|. |+.  |||+||||||++||||
T Consensus        24 l~~L~~~Vr~i~~~Gl~wg~~k~~piafGlkkL~i~~vveDd~~~tD~lee~-i~~--~ed~VqSvdI~~~~ki   94 (94)
T 1f60_B           24 LEEMVANVKAIEMEGLTWGAHQFIPIGFGIKKLQINCVVEDDKVSLDDLQQS-IEE--DEDHVQSTDIAAMQKL   94 (94)
T ss_dssp             HHHHHHHHHTCCCTTEEEEEEEEEEEETTEEEEEEEEEEETTTCCHHHHHHH-HHT--CTTTEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHhCcCCcEEEEEEEEEEeeeeEEEEEEEEEECCccChHHHHHH-HHh--ccCceeEEEEEEEEcC
Confidence            6899999999999999999999999999999999999999999999998665 555  9999999999999997

>1gh8_A Translation elongation factor 1BETA; alpha-beta sandwich, gene regulation, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.58.12.1

Probab=99.97  E-value=4e-32  Score=173.70  Aligned_cols=70  Identities=14%  Similarity=0.274  Sum_probs=65.6

Q ss_pred             ChHHHHhhhccccCceeeccceeeeeeeeeeeEEEEEEEecCccChhhhhhhhhcccCCCCceeeeeeeccccC
Q 035053            1 MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI   74 (74)
Q Consensus         1 m~~le~~Vr~I~~dGL~WG~sKlvpv~yGikKLqi~cvveDdkVs~ddl~ee~i~~e~~ed~VQS~Di~afnKi   74 (74)
                      |++|+++||++.++||.||++|++|+|||||||||.|+++|+++|+|++.|. |+.  ||| |||+||++||||
T Consensus        19 l~~L~~~vk~~~~~gl~w~~~k~~piafGlk~L~i~~vveD~~~~td~lee~-i~~--~e~-Vqsvdv~~~~ri   88 (89)
T 1gh8_A           19 LEALKKEIQERIPEGTELHKIDEEPIAFGLVALNVMVVVGDAEGGTEAAEES-LSG--IEG-VSNIEVTDVRRL   88 (89)
T ss_dssp             HHHHHHHHHHHSCTTSEECCCCEEECSSSCEEEEEEEEESSSCGGGGHHHHH-HTT--SCS-SEEEEEEEEEEC
T ss_pred             HHHHHHHHHHhccCCcEEeeeeEEEEEcceeeEEEEEEEEcCCcChHHHHHH-Hhc--cCC-ccEEEEEEEEec
Confidence            6899999999999999999999999999999999999999999999998665 555  998 999999999996

>2yy3_A Elongation factor 1-beta; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 2.50A {Pyrococcus horikoshii}

Probab=99.97  E-value=4.6e-31  Score=169.48  Aligned_cols=70  Identities=20%  Similarity=0.315  Sum_probs=65.2

Q ss_pred             ChHHHHhhhccccCceeeccceeeeeeeeeeeEEEEEEEecCcc-ChhhhhhhhhcccCCCCceeeeeeeccccC
Q 035053            1 MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLV-SVDSLIEEHLTVEPCNEYVQSCDIVAFNKI   74 (74)
Q Consensus         1 m~~le~~Vr~I~~dGL~WG~sKlvpv~yGikKLqi~cvveDdkV-s~ddl~ee~i~~e~~ed~VQS~Di~afnKi   74 (74)
                      |++|+++||++.++||.||++|++|+|||||||||.|+++|+++ |+|++.|. |+.  || +|||+||++||||
T Consensus        21 l~~L~~~vk~~~~~gl~w~~~k~~pIafGlk~L~i~~vveD~~~~~tD~lee~-i~~--~e-~VqSvdV~~~~ri   91 (91)
T 2yy3_A           21 LDELEEKLKKVIPEKYGLAKVEREPIAFGLVALKFYVLGRDEEGYSFDEVAEK-FEE--VE-NVESAEVETVSRI   91 (91)
T ss_dssp             HHHHHHHHHHHSCTTCEEEEEEEEECTTSCEEEEEEEEECSSTTCCHHHHHHH-HHH--ST-TEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHhccCCcEEeeeeEEEEEcceeeEEEEEEEECCCccccHHHHHH-Hhc--CC-CceEEEEEEEEcC
Confidence            68999999999999999999999999999999999999999999 99998665 555  98 5999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	74
d1f60b_	90	d.58.12.1 (B:) Guanine nucleotide exchange factor	2e-29
d1b64a_	91	d.58.12.1 (A:) Guanine nucleotide exchange factor	6e-27
d1gh8a_	89	d.58.12.1 (A:) aEF-1beta {Archaeon Methanobacteriu	6e-22

>d1f60b_ d.58.12.1 (B:) Guanine nucleotide exchange factor (GEF) domain from elongation factor-1 beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 90

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: eEF-1beta-like
family: eEF-1beta-like
domain: Guanine nucleotide exchange factor (GEF) domain from elongation factor-1 beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 97.8 bits (244), Expect = 2e-29
 Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 3/74 (4%)

Query: 1  MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCN 60
          ++++   V+++EM GL WGA + +P+G+GIKKLQI   + DD VS+D L +    +E   
Sbjct: 20 LEEMVANVKAIEMEGLTWGAHQFIPIGFGIKKLQINCVVEDDKVSLDDLQQS---IEEDE 76

Query: 61 EYVQSCDIVAFNKI 74
          ++VQS DI A  K+
Sbjct: 77 DHVQSTDIAAMQKL 90

>d1b64a_ d.58.12.1 (A:) Guanine nucleotide exchange factor (GEF) domain from elongation factor-1 beta {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: eEF-1beta-like
family: eEF-1beta-like
domain: Guanine nucleotide exchange factor (GEF) domain from elongation factor-1 beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.3 bits (227), Expect = 6e-27
 Identities = 43/74 (58%), Positives = 51/74 (68%), Gaps = 3/74 (4%)

Query: 1  MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCN 60
          M KLEE VRS++  GL WG+SKLVPVGYGIKKLQI   + DD V  D L E+   +    
Sbjct: 21 MAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQ---ITAFE 77

Query: 61 EYVQSCDIVAFNKI 74
          +YVQS D+ AFNKI
Sbjct: 78 DYVQSMDVAAFNKI 91

>d1gh8a_ d.58.12.1 (A:) aEF-1beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 89

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: eEF-1beta-like
family: eEF-1beta-like
domain: aEF-1beta
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 78.5 bits (194), Expect = 6e-22
 Identities = 10/74 (13%), Positives = 30/74 (40%), Gaps = 4/74 (5%)

Query: 1  MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCN 60
          ++ L++ ++     G         P+ +G+  L +M+ + D     ++  E    +    
Sbjct: 19 LEALKKEIQERIPEGTELHKIDEEPIAFGLVALNVMVVVGDAEGGTEAAEESLSGI---- 74

Query: 61 EYVQSCDIVAFNKI 74
          E V + ++    ++
Sbjct: 75 EGVSNIEVTDVRRL 88

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	74
d1f60b_	90	Guanine nucleotide exchange factor (GEF) domain fr	99.98
d1b64a_	91	Guanine nucleotide exchange factor (GEF) domain fr	99.98
d1gh8a_	89	aEF-1beta {Archaeon Methanobacterium thermoautotro	99.95

>d1f60b_ d.58.12.1 (B:) Guanine nucleotide exchange factor (GEF) domain from elongation factor-1 beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: eEF-1beta-like
family: eEF-1beta-like
domain: Guanine nucleotide exchange factor (GEF) domain from elongation factor-1 beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=1.5e-33  Score=178.81  Aligned_cols=71  Identities=42%  Similarity=0.750  Sum_probs=66.8

Q ss_pred             ChHHHHhhhccccCceeeccceeeeeeeeeeeEEEEEEEecCccChhhhhhhhhcccCCCCceeeeeeeccccC
Q 035053            1 MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI   74 (74)
Q Consensus         1 m~~le~~Vr~I~~dGL~WG~sKlvpv~yGikKLqi~cvveDdkVs~ddl~ee~i~~e~~ed~VQS~Di~afnKi   74 (74)
                      |++|+++||+++++||.||+++++|+||||||||+.|+++||++|+|++.|+ |..  +||+||||||+|||||
T Consensus        20 l~~l~~~ik~i~~~gl~~g~~~~~PiafGlkkL~i~~vveDd~~~~D~lee~-i~~--~Ed~VqSvdI~~~~ki   90 (90)
T d1f60b_          20 LEEMVANVKAIEMEGLTWGAHQFIPIGFGIKKLQINCVVEDDKVSLDDLQQS-IEE--DEDHVQSTDIAAMQKL   90 (90)
T ss_dssp             HHHHHHHHHTCCCTTEEEEEEEEEEEETTEEEEEEEEEEETTTCCHHHHHHH-HHT--CTTTEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHhCcCccEEeEEEEEEEeeeeeeEEEEEEEEeCCcCHHHHHHH-HHh--hcCceeEEEEEEEecC
Confidence            5789999999999999999999999999999999999999999999998665 545  9999999999999997

>d1b64a_ d.58.12.1 (A:) Guanine nucleotide exchange factor (GEF) domain from elongation factor-1 beta {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: eEF-1beta-like
family: eEF-1beta-like
domain: Guanine nucleotide exchange factor (GEF) domain from elongation factor-1 beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=2.3e-33  Score=178.31  Aligned_cols=71  Identities=62%  Similarity=0.951  Sum_probs=66.8

Q ss_pred             ChHHHHhhhccccCceeeccceeeeeeeeeeeEEEEEEEecCccChhhhhhhhhcccCCCCceeeeeeeccccC
Q 035053            1 MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI   74 (74)
Q Consensus         1 m~~le~~Vr~I~~dGL~WG~sKlvpv~yGikKLqi~cvveDdkVs~ddl~ee~i~~e~~ed~VQS~Di~afnKi   74 (74)
                      |++|++.||++++|||.||++|++|+||||||||+.|+++||++|+|++.|. +..  +||+||||||+|||||
T Consensus        21 l~~l~~~vk~i~~~gl~wg~~k~~PIaFGlkkL~i~~vveDd~~~~D~lee~-i~~--~Ed~VqsvdI~s~nki   91 (91)
T d1b64a_          21 MAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQ-ITA--FEDYVQSMDVAAFNKI   91 (91)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEEEEEESSSSCEEEEEEEEECTTSSCHHHHHHH-HTT--CTTTEEEEEESCCBCC
T ss_pred             HHHHHHHHHHhccccCcEeeEEEEEEEeeeeeEEEEEEEEeCCcChHHHHHH-HHh--hcCceeEEEEEEeecC
Confidence            5789999999999999999999999999999999999999999999998766 544  9999999999999997

>d1gh8a_ d.58.12.1 (A:) aEF-1beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: eEF-1beta-like
family: eEF-1beta-like
domain: aEF-1beta
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.95  E-value=1.4e-28  Score=155.23  Aligned_cols=70  Identities=14%  Similarity=0.272  Sum_probs=64.4

Q ss_pred             ChHHHHhhhccccCceeeccceeeeeeeeeeeEEEEEEEecCccChhhhhhhhhcccCCCCceeeeeeeccccC
Q 035053            1 MKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI   74 (74)
Q Consensus         1 m~~le~~Vr~I~~dGL~WG~sKlvpv~yGikKLqi~cvveDdkVs~ddl~ee~i~~e~~ed~VQS~Di~afnKi   74 (74)
                      |++|+++||++.+||++||+++++|+||||||||+.|+++|+++|+|++.+ .+..  +|+ |||+||++||||
T Consensus        19 l~~l~~~ik~~~~~g~~~~~~~~~PiaFGLk~L~v~~vv~D~~g~~D~lee-~i~~--ie~-Vqsvev~~~~rl   88 (89)
T d1gh8a_          19 LEALKKEIQERIPEGTELHKIDEEPIAFGLVALNVMVVVGDAEGGTEAAEE-SLSG--IEG-VSNIEVTDVRRL   88 (89)
T ss_dssp             HHHHHHHHHHHSCTTSEECCCCEEECSSSCEEEEEEEEESSSCGGGGHHHH-HHTT--SCS-SEEEEEEEEEEC
T ss_pred             HHHHHHHHHhhccCCcEEEEEEEEEEEcceEeEEEEEEEEcCCcChHHHHH-HHhc--cCC-CcEEEeEEeecc
Confidence            578999999999999999999999999999999999999999999999855 4555  866 999999999996