Citrus Sinensis ID: 035061

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70----
Protein Sequence
MIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKNYQSPNFKKVKHLKQIPYRGL
Secondary Structure (PSIPRED)
cEEEEEEccEEEEEcccccEEEEEEccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEcccEEEEEEcccccEEEEEEccccccccHcccHHHHHHHHHHHHHHHcccccccHHHHHHHcEEEcccc
Coil and Loop (DISEMBL)
miwvdrlgfdvriscpqkglfdvripfptevtdekgakssfNCMSQQAWEVEknyqspnfkkvkhlkqipyrgl
Flexible Loop (DISEMBL)
miwvdrlgfdvriscpqkglfdvripfptevtdekgakssFNCMSQQAWEVEknyqspnfkkvkhlkqipyrgl
Low Complexity Region (SEG)
MIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKNYQSPNFKKVKHLKQIPYRGL
Disordered region (IsUnstruct)
*IWVDRLGFDVRISCPQKGLFDVRIPFPTEV*******************************************
Disordered Region (DISOPRED)
MIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTD*KGAKSSFNCMSQQAWEVEKNYQSPNFKKVKHLKQIPYR**
Disordered Region (DISEMBL)
MIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKNYQSPNFKKVKHLKQIPYRGL
Disordered Region (DISPRO)
MIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKNYQSPNFKKVKHLKQIPYRGL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKNYQSPNFKKVKHLKQIPYRGL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	74
225443292	324	PREDICTED: uncharacterized protein LOC10	0.986	0.225	0.808	6e-28
298204792	318	unnamed protein product [Vitis vinifera]	0.986	0.229	0.808	7e-28
147855252	304	hypothetical protein VITISV_020994 [Viti	0.986	0.240	0.794	9e-27
224113295	322	predicted protein [Populus trichocarpa]	1.0	0.229	0.783	3e-26
388518743	312	unknown [Lotus japonicus]	0.932	0.221	0.753	2e-25
358248688	305	uncharacterized protein LOC100814950 [Gl	0.932	0.226	0.753	4e-25
35187431	185	fiber protein Fb4 [Gossypium barbadense]	0.986	0.394	0.767	8e-25
316936736	320	glutamyl-tRNA reductase binding protein	1.0	0.231	0.702	4e-24
316936734	320	glutamyl-tRNA reductase binding protein	1.0	0.231	0.689	1e-23
449432392	320	PREDICTED: uncharacterized protein LOC10	0.932	0.215	0.724	2e-23

>gi|225443292|ref|XP_002274572.1| PREDICTED: uncharacterized protein LOC100260424 [Vitis vinifera]

 Score =  127 bits (320), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 59/73 (80%), Positives = 65/73 (89%)

Query: 1   MIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKNYQSPNF 60
           +IWVDRLGFD+RIS PQK +F+VRIPFP EVTDEKGAKSSFN MSQ AWEVEKNY +P+F
Sbjct: 251 LIWVDRLGFDMRISSPQKDVFEVRIPFPREVTDEKGAKSSFNSMSQLAWEVEKNYNAPDF 310

Query: 61  KKVKHLKQIPYRG 73
           KKVK LKQI YRG
Sbjct: 311 KKVKQLKQITYRG 323

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204792|emb|CBI25290.3| unnamed protein product [Vitis vinifera]

 Score =  127 bits (320), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 59/73 (80%), Positives = 65/73 (89%)

Query: 1   MIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKNYQSPNF 60
           +IWVDRLGFD+RIS PQK +F+VRIPFP EVTDEKGAKSSFN MSQ AWEVEKNY +P+F
Sbjct: 245 LIWVDRLGFDMRISSPQKDVFEVRIPFPREVTDEKGAKSSFNSMSQLAWEVEKNYNAPDF 304

Query: 61  KKVKHLKQIPYRG 73
           KKVK LKQI YRG
Sbjct: 305 KKVKQLKQITYRG 317

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147855252|emb|CAN79599.1| hypothetical protein VITISV_020994 [Vitis vinifera]

 Score =  124 bits (310), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 58/73 (79%), Positives = 64/73 (87%)

Query: 1   MIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKNYQSPNF 60
           +IWVDRLGFD+RIS PQ  +F+VRIPFP EVTDEKGAKSSFN MSQ AWEVEKNY +P+F
Sbjct: 231 LIWVDRLGFDMRISSPQXDVFEVRIPFPREVTDEKGAKSSFNSMSQLAWEVEKNYNAPDF 290

Query: 61  KKVKHLKQIPYRG 73
           KKVK LKQI YRG
Sbjct: 291 KKVKQLKQIAYRG 303

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113295|ref|XP_002316448.1| predicted protein [Populus trichocarpa] gi|222865488|gb|EEF02619.1| predicted protein [Populus trichocarpa]

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 58/74 (78%), Positives = 64/74 (86%)

Query: 1   MIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKNYQSPNF 60
           MIWVDRLGFD+R+  PQKG FDVRIPFP EVTD KGAKSSFN MSQ AWEVEKNYQ+ NF
Sbjct: 249 MIWVDRLGFDMRLWSPQKGTFDVRIPFPREVTDVKGAKSSFNGMSQLAWEVEKNYQTLNF 308

Query: 61  KKVKHLKQIPYRGL 74
           KKV+ LKQI ++GL
Sbjct: 309 KKVQQLKQITHKGL 322

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518743|gb|AFK47433.1| unknown [Lotus japonicus]

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 52/69 (75%), Positives = 61/69 (88%)

Query: 1   MIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKNYQSPNF 60
           M+WVDRLGFD+R+SCP +G F+ RIPFP EVTDEKGAKSSFNCMSQ AWEVEKN+  P+F
Sbjct: 242 MVWVDRLGFDMRLSCPLQGTFEARIPFPREVTDEKGAKSSFNCMSQLAWEVEKNFHPPDF 301

Query: 61  KKVKHLKQI 69
           +KVK LKQ+
Sbjct: 302 QKVKQLKQV 310

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248688|ref|NP_001240179.1| uncharacterized protein LOC100814950 [Glycine max] gi|255639606|gb|ACU20097.1| unknown [Glycine max]

 Score =  118 bits (296), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 52/69 (75%), Positives = 61/69 (88%)

Query: 1   MIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKNYQSPNF 60
           M+WVDRLGFD+R+S P KG+FDVRIPFP EVTDEKGAKS+FNCMSQ AWEVE+N+Q P+F
Sbjct: 232 MLWVDRLGFDMRLSSPHKGVFDVRIPFPREVTDEKGAKSTFNCMSQLAWEVERNFQHPDF 291

Query: 61  KKVKHLKQI 69
            KVK LK +
Sbjct: 292 SKVKELKPV 300

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|35187431|gb|AAQ84307.1| fiber protein Fb4 [Gossypium barbadense]

 Score =  117 bits (294), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 56/73 (76%), Positives = 63/73 (86%)

Query: 1   MIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKNYQSPNF 60
           MIWVD LGFD+RI  PQKG+FDVRIPFP EVTDEKGAKSSFN MSQ AWEVEKN+ +P+F
Sbjct: 111 MIWVDCLGFDLRIYSPQKGVFDVRIPFPREVTDEKGAKSSFNGMSQLAWEVEKNFHAPDF 170

Query: 61  KKVKHLKQIPYRG 73
           +KVK LK+I Y G
Sbjct: 171 EKVKPLKKIVYSG 183

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|316936736|gb|ADU60362.1| glutamyl-tRNA reductase binding protein [Nicotiana tabacum]

 Score =  115 bits (287), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 52/74 (70%), Positives = 59/74 (79%)

Query: 1   MIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKNYQSPNF 60
           M+WVDRLGFDVR   PQ  +F+ RIPFP EVTDEKGAKSSFNCMSQ AWEVEKN+ +  F
Sbjct: 247 MLWVDRLGFDVRFRSPQNDVFEARIPFPREVTDEKGAKSSFNCMSQLAWEVEKNFHAAEF 306

Query: 61  KKVKHLKQIPYRGL 74
           +K K LK+I Y GL
Sbjct: 307 EKAKQLKKIEYTGL 320

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|316936734|gb|ADU60361.1| glutamyl-tRNA reductase binding protein [Nicotiana tabacum]

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 51/74 (68%), Positives = 58/74 (78%)

Query: 1   MIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKNYQSPNF 60
           M+WVDRLGFDVR   PQ  +F+ RIPFP EV DEKGAKSSFNCMSQ AWEVEKN+ +  F
Sbjct: 247 MLWVDRLGFDVRFRSPQNDVFEARIPFPREVADEKGAKSSFNCMSQLAWEVEKNFHAAEF 306

Query: 61  KKVKHLKQIPYRGL 74
           +K K LK+I Y GL
Sbjct: 307 EKAKQLKKIEYTGL 320

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432392|ref|XP_004133983.1| PREDICTED: uncharacterized protein LOC101210647 [Cucumis sativus] gi|449487540|ref|XP_004157677.1| PREDICTED: uncharacterized protein LOC101224538 [Cucumis sativus]

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 50/69 (72%), Positives = 60/69 (86%)

Query: 1   MIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKNYQSPNF 60
           +IWVDRLGFDVRI  PQ G+F++RIPFP EVTDEKGAKS+FN MSQQAWEVEKN+ +P+F
Sbjct: 245 LIWVDRLGFDVRIFSPQNGIFEIRIPFPREVTDEKGAKSTFNGMSQQAWEVEKNFVAPDF 304

Query: 61  KKVKHLKQI 69
           ++VK  K I
Sbjct: 305 ERVKQFKMI 313

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	74
TAIR|locus:2094741	317	PGR7 "AT3G21200" [Arabidopsis	0.918	0.214	0.710	1.1e-21

TAIR|locus:2094741 PGR7 "AT3G21200" [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 49/69 (71%), Positives = 58/69 (84%)

Query:     1 MIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKNYQSPNF 60
             MIW+DRLGFD+R+  P +G++DVRIPFP EVTDEKGAKSSFN MSQ AWEVEK+Y   +F
Sbjct:   238 MIWMDRLGFDLRVWSP-RGVYDVRIPFPMEVTDEKGAKSSFNGMSQLAWEVEKSYCPADF 296

Query:    61 KKVKHLKQI 69
              KVK LKQ+
Sbjct:   297 NKVKLLKQV 305


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.137   0.438    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       74        74   0.00091  102 3  11 22  0.36    29
                                                     29  0.46    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  568 (60 KB)
  Total size of DFA:  118 KB (2077 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.28u 0.15s 8.43t   Elapsed:  00:00:01
  Total cpu time:  8.28u 0.15s 8.43t   Elapsed:  00:00:01
  Start:  Fri May 10 05:19:05 2013   End:  Fri May 10 05:19:06 2013

GO:0009507 "chloroplast" evidence=IDA

GO:0009767 "photosynthetic electron transport chain" evidence=IMP

GO:0009791 "post-embryonic development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0033014 "tetrapyrrole biosynthetic process" evidence=IMP

GO:0043495 "protein anchor" evidence=IDA

GO:0070455 "positive regulation of heme biosynthetic process" evidence=IMP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	74
PF10615	83	DUF2470: Protein of unknown function (DUF2470); In	99.19
COG0748	245	HugZ Putative heme iron utilization protein [Inorg	94.13

>PF10615 DUF2470: Protein of unknown function (DUF2470); InterPro: IPR019595 This entry represents a putative haem-iron utilisation family of proteins, as many members are annotated as being pyridoxamine 5'-phosphate oxidase-related, FMN-binding; however the function of this domain is not known

Probab=99.19  E-value=1.3e-11  Score=76.98  Aligned_cols=41  Identities=49%  Similarity=0.747  Sum_probs=34.7

Q ss_pred             CceeeeccceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHHH
Q 035061            1 MIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMS   45 (74)
Q Consensus         1 m~~VDRlG~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M~   45 (74)
                      |++||++||++++   + +...+||||++|++|.++++.+|++|+
T Consensus        43 m~~id~~G~~l~~---~-~~~~~ripF~~p~~~~~e~r~~lV~ma   83 (83)
T PF10615_consen   43 MTDIDRDGFDLRV---G-GDQDVRIPFPPPVTDPEEARDALVEMA   83 (83)
T ss_dssp             EEEEETTEEEEEE---T-TTEEEEEE-SS---SHCCHHHHHHHHH
T ss_pred             EEEEeccccEEEE---e-CCcceEcCCCCCCCCHHHHHHHHHHhC
Confidence            6899999999999   3 789999999999999999999999996

; PDB: 3GAS_D 3SWJ_A 2ARZ_B.

>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism]

Probab=94.13  E-value=0.046  Score=41.56  Aligned_cols=46  Identities=9%  Similarity=-0.027  Sum_probs=41.6

Q ss_pred             CceeeeccceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHHHHH
Q 035061            1 MIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQ   47 (74)
Q Consensus         1 m~~VDRlG~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M~q~   47 (74)
                      |..||+.|+++.++... +..-.|+.|+.|..+.++...+++.|+..
T Consensus       192 I~~Id~~gdfll~~l~~-~~gl~v~gFgqa~~~~~d~~~~lV~l~~~  237 (245)
T COG0748         192 IKGIDAMGDFLLFQLTP-GQGLFVKGFGQAYAISGDGRIALVGLAGG  237 (245)
T ss_pred             hhcccccccceeeeccC-CCceEEeccchhhccccchhHHHHHHhcC
Confidence            67899999999998765 77789999999999999999999999875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	74
3dnh_A	258	Uncharacterized protein ATU2129; APC6114, agrobact	9e-09
2arz_A	247	Hypothetical protein PA4388; hypothetical protein,	1e-08
3gas_A	259	Heme oxygenase; FMN-binding split barrel, oxidored	2e-06
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	6e-05

>3dnh_A Uncharacterized protein ATU2129; APC6114, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2, protein structure initiative; 1.94A {Agrobacterium tumefaciens} Length = 258

 Score = 48.8 bits (115), Expect = 9e-09
 Identities = 7/48 (14%), Positives = 16/48 (33%), Gaps = 5/48 (10%)

Query: 1   MIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQA 48
           +  +D  G D+            R+ F   V   K  + +   + + +
Sbjct: 216 ITSIDPDGIDLAS-----ASDLARLWFAERVETLKQFEKALAQLLKGS 258

>2arz_A Hypothetical protein PA4388; hypothetical protein,structural genomics,MCSG, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa} SCOP: b.45.1.1 Length = 247

 Score = 48.5 bits (114), Expect = 1e-08
 Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 6/58 (10%)

Query: 1   MIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQA-WEVEKNYQS 57
           +  +D  GF +RI     G     +PFP    +    + +   +++   W   +  Q 
Sbjct: 195 LAGIDTEGFHLRI-----GQGLHWLPFPAACGNPGAVRQALVQLARAERWPTVEPEQG 247

>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori} Length = 259

 Score = 42.4 bits (99), Expect = 2e-06
 Identities = 13/65 (20%), Positives = 20/65 (30%), Gaps = 4/65 (6%)

Query: 1  MIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKNYQSPNF 60
             VD  G  +  +        +RI F  EV D K  K++   + Q   +          
Sbjct: 35 FKSVDSQGIVIGYN----NNQTLRIEFNHEVKDPKDYKNATIELCQSVEKTHDLKGVEEE 90

Query: 61 KKVKH 65
           K   
Sbjct: 91 VKAFK 95

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} Length = 379

 Score = 37.8 bits (88), Expect = 6e-05
 Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 13/57 (22%)

Query: 4   VDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKNYQSPNF 60
           +  LG DV IS PQKG        P        A      +S  A +  ++ +S  F
Sbjct: 185 MKELGIDVLISAPQKGW---SST-P-------CA--GLVMLSAAAIKKVESTESNCF 228

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	74
2arz_A	247	Hypothetical protein PA4388; hypothetical protein,	99.27
3gas_A	259	Heme oxygenase; FMN-binding split barrel, oxidored	98.99
3dnh_A	258	Uncharacterized protein ATU2129; APC6114, agrobact	98.82
3swj_A	251	CHUZ, putative uncharacterized protein; heme oxyge	98.76

>2arz_A Hypothetical protein PA4388; hypothetical protein,structural genomics,MCSG, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa} SCOP: b.45.1.1

Probab=99.27  E-value=1.2e-12  Score=91.19  Aligned_cols=47  Identities=17%  Similarity=0.270  Sum_probs=42.8

Q ss_pred             CceeeeccceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHHHHHHHHHh
Q 035061            1 MIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVE   52 (74)
Q Consensus         1 m~~VDRlG~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M~q~Awe~e   52 (74)
                      |++|||+||+||++     +.++||||++|++|.++++++|++|++.||+..
T Consensus       195 ~~~iD~~G~~l~~~-----~~~~Ri~F~~~~~~~~~~~~~l~~m~~~a~~~~  241 (247)
T 2arz_A          195 LAGIDTEGFHLRIG-----QGLHWLPFPAACGNPGAVRQALVQLARAERWPT  241 (247)
T ss_dssp             EEEECSSEEEEEET-----TEEEEEECSSCCCSHHHHHHHHHHHHHCSSCCC
T ss_pred             EEEEccCCCEEEEC-----CEEEEEeCCCcCCCHHHHHHHHHHHHHHhHhhc
Confidence            78999999999993     368999999999999999999999999998544

>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori}

Probab=98.99  E-value=3.8e-10  Score=82.20  Aligned_cols=47  Identities=26%  Similarity=0.231  Sum_probs=42.9

Q ss_pred             CceeeeccceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHHHHHHHHH
Q 035061            1 MIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEV   51 (74)
Q Consensus         1 m~~VDRlG~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M~q~Awe~   51 (74)
                      |++||+.||++++   + ++..+||||++|++|.++++.+|++|++.|=+.
T Consensus        35 m~~iD~~G~~l~~---~-~~~~~ri~F~~~~~~~~~~r~~lV~m~~~A~~~   81 (259)
T 3gas_A           35 FKSVDSQGIVIGY---N-NNQTLRIEFNHEVKDPKDYKNATIELCQSVEKT   81 (259)
T ss_dssp             EEEEETTEEEEEE---T-TTEEEEEECSSCCCCGGGHHHHHHHHHHHHHHT
T ss_pred             EEEEecCccEEEE---C-CceEEEEeCCCcCCCHHHHHHHHHHHHHHHHHh
Confidence            7899999999999   3 578999999999999999999999999998643

>3dnh_A Uncharacterized protein ATU2129; APC6114, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2, protein structure initiative; 1.94A {Agrobacterium tumefaciens}

Probab=98.82  E-value=1.2e-09  Score=78.30  Aligned_cols=40  Identities=18%  Similarity=0.097  Sum_probs=37.1

Q ss_pred             CceeeeccceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHHHHHH
Q 035061            1 MIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQA   48 (74)
Q Consensus         1 m~~VDRlG~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M~q~A   48 (74)
                      |++|||+||++|+     |++++||||+   +|.++++++|++|++.|
T Consensus       216 ~~~vD~~G~dl~~-----~~~~~Ri~F~---~d~~~~r~~lv~m~~~a  255 (258)
T 3dnh_A          216 ITSIDPDGIDLAS-----ASDLARLWFA---ERVETLKQFEKALAQLL  255 (258)
T ss_dssp             EEEEETTEEEEEC-----SSCEEEEECS---SCCCSHHHHHHHHHHHT
T ss_pred             EEEEccCcCEEEE-----CCEEEEeeCC---CCHHHHHHHHHHHHHHh
Confidence            6899999999997     3589999999   99999999999999986

>3swj_A CHUZ, putative uncharacterized protein; heme oxygenase, bacterial iron aquisition, heme bindin; HET: HEM; 2.41A {Campylobacter jejuni}

Probab=98.76  E-value=3.6e-09  Score=76.06  Aligned_cols=43  Identities=26%  Similarity=0.381  Sum_probs=38.3

Q ss_pred             CceeeeccceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHHHHHH
Q 035061            1 MIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQA   48 (74)
Q Consensus         1 m~~VDRlG~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M~q~A   48 (74)
                      |+.||+.||++++   + ++..+||||++|+ |.++++.+|++|++.|
T Consensus        36 ~~~iD~~g~~l~~---~-~~~~~ri~F~~~~-~~~~~r~~lv~m~~~a   78 (251)
T 3swj_A           36 LKSVDFNGLDLVY---N-DKENLRVEFPKKA-DENTIKDTIISLCMSA   78 (251)
T ss_dssp             EEEEETTEEEEEC-------CEEEEECSSCC-CTTTHHHHHHHHHHHH
T ss_pred             EEEEecccCEEEe---C-CceEEEEeCCCCC-CHHHHHHHHHHHHHhc
Confidence            6899999999998   2 5779999999999 9999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	74
d2arza1	238	b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Ps	2e-09

>d2arza1 b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Pseudomonas aeruginosa [TaxId: 287]} Length = 238

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Hypothetical protein PA4388
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 49.0 bits (116), Expect = 2e-09
 Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 5/48 (10%)

Query: 1   MIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQA 48
           +  +D  GF +RI     G     +PFP    +    + +   +++  
Sbjct: 191 LAGIDTEGFHLRI-----GQGLHWLPFPAACGNPGAVRQALVQLARAE 233

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	74
d2arza1	238	Hypothetical protein PA4388 {Pseudomonas aeruginos	99.14

>d2arza1 b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Hypothetical protein PA4388
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.14  E-value=8.8e-12  Score=86.25  Aligned_cols=43  Identities=19%  Similarity=0.355  Sum_probs=39.3

Q ss_pred             CceeeeccceEEEEcCCCCceeeeecCCCccCCHHHHHHHHHHHHHHH
Q 035061            1 MIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQA   48 (74)
Q Consensus         1 m~~VDRlG~~lRve~~~~g~~dvRLPFprPV~D~~~lk~~i~~M~q~A   48 (74)
                      |++||++||+|+++     +..+||||++|++|.++++.+|++|++.|
T Consensus       191 m~~iD~~G~~l~~~-----~~~~ri~F~~~~~~~~~~r~~lv~l~~~a  233 (238)
T d2arza1         191 LAGIDTEGFHLRIG-----QGLHWLPFPAACGNPGAVRQALVQLARAE  233 (238)
T ss_dssp             EEEECSSEEEEEET-----TEEEEEECSSCCCSHHHHHHHHHHHHHCS
T ss_pred             EEEEccCcCEEEEC-----CEEEEEeCCCcCCCHHHHHHHHHHHHHHh
Confidence            78999999999982     34799999999999999999999999865