Citrus Sinensis ID: 035150

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--
Protein Sequence
MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVFNTARKLIIFNGELDRIRSGCILHHSFIIIVLSVNLV
Secondary Structure (PSIPRED)
cccccccccEEEEEEEccccHHHHHHHHHHHHHHHHccccEEEEEccccccEEEEEEEEEEEEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHccccEEEEcccHHHccccEEEEEEEEEEEEEEEcc
Coil and Loop (DISEMBL)
madrvkpedelFLVAYPYFNVNEMLVVEELYKEAVFNTARKLIIFNGELdrirsgcilhHSFIIIVLSVNLV
Flexible Loop (DISEMBL)
madrvkpedelFLVAYPYFNVNEMLVVEELYKEAVFNTARKLIIFNGELDRIRSGCILHHSFIIIVLSVNLV
Low Complexity Region (SEG)
MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVFNTARKLIIFNGELDRIRSGCILHHSFIIIVLSVNLV
Disordered region (IsUnstruct)
*********ELFLVAYPYFNVNEMLVVEELYKEAVFNTARKLIIFNGELDRIRSGCILHHSFIIIVLSVN**
Disordered Region (DISOPRED)
*********ELFLVAYPYFNVNEMLVVEELYKEAVFNTARKLIIFNGELDRIRSGCILHHSFIIIVLSVNLV
Disordered Region (DISEMBL)
MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVFNTARKLIIFNGELDRIRSGCILHHSFIIIVLSVNLV
Disordered Region (DISPRO)
*****KPEDELFLVAYPYFNVNEMLVVEELYKEAVFNTARKLIIFNGELDRIRSGCILHHSFIIIVLSVNLV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVFNTARKLIIFNGELDRIRSGCILHHSFIIIVLSVNLV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	72
9758878	248	unnamed protein product [Arabidopsis tha	0.805	0.233	0.965	1e-24
225427403	322	PREDICTED: uncharacterized protein LOC10	0.763	0.170	0.963	6e-23
326523775	322	predicted protein [Hordeum vulgare subsp	0.763	0.170	0.909	7e-23
357146418	322	PREDICTED: uncharacterized protein LOC10	0.763	0.170	0.909	1e-22
440583726	283	hypothetical protein [Lupinus angustifol	0.805	0.204	0.913	2e-22
449456759	336	PREDICTED: uncharacterized protein LOC10	0.763	0.163	0.963	2e-22
18422955	316	uncharacterized protein [Arabidopsis tha	0.763	0.174	0.963	2e-22
413926747	310	hypothetical protein ZEAMMB73_267474 [Ze	0.763	0.177	0.909	3e-22
224034407	324	unknown [Zea mays] gi|413926746|gb|AFW66	0.763	0.169	0.909	3e-22
226494690	310	uncharacterized protein LOC100279074 [Ze	0.763	0.177	0.909	3e-22

>gi|9758878|dbj|BAB09432.1| unnamed protein product [Arabidopsis thaliana]

 Score =  116 bits (291), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 56/58 (96%), Positives = 56/58 (96%)

Query: 1   MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVFNTARKLIIFNGELDRIRSGCIL 58
           MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAV NT RKLIIFNGELDRIRSGCIL
Sbjct: 183 MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVVNTDRKLIIFNGELDRIRSGCIL 240

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427403|ref|XP_002263777.1| PREDICTED: uncharacterized protein LOC100265501 [Vitis vinifera] gi|296088391|emb|CBI37382.3| unnamed protein product [Vitis vinifera]

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 53/55 (96%), Positives = 53/55 (96%)

Query: 1   MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVFNTARKLIIFNGELDRIRSG 55
           MADRVKPEDELFLVAYPYFNVNEMLVVEELY EAV NTARKLIIFNGELDRIRSG
Sbjct: 189 MADRVKPEDELFLVAYPYFNVNEMLVVEELYNEAVVNTARKLIIFNGELDRIRSG 243

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326523775|dbj|BAJ93058.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 50/55 (90%), Positives = 53/55 (96%)

Query: 1   MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVFNTARKLIIFNGELDRIRSG 55
           MADRV+PEDE+FLVAYPYFNVNEMLVVEELYKEAV NT RK+IIFNGELDRIRSG
Sbjct: 189 MADRVRPEDEIFLVAYPYFNVNEMLVVEELYKEAVLNTERKMIIFNGELDRIRSG 243

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357146418|ref|XP_003573985.1| PREDICTED: uncharacterized protein LOC100843789 [Brachypodium distachyon]

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/55 (90%), Positives = 53/55 (96%)

Query: 1   MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVFNTARKLIIFNGELDRIRSG 55
           MADRV+PEDE+FLVAYPYFNVNEMLVVEELYKEAV NT RK+IIFNGELDRIRSG
Sbjct: 189 MADRVQPEDEIFLVAYPYFNVNEMLVVEELYKEAVVNTDRKMIIFNGELDRIRSG 243

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|440583726|emb|CCH47228.1| hypothetical protein [Lupinus angustifolius]

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 53/58 (91%), Positives = 54/58 (93%)

Query: 1   MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVFNTARKLIIFNGELDRIRSGCIL 58
           M+DRVK  DELFLVAYPYFNVNEMLVVEELYKEAV NT RKLIIFNGELDRIRSGCIL
Sbjct: 217 MSDRVKAGDELFLVAYPYFNVNEMLVVEELYKEAVLNTERKLIIFNGELDRIRSGCIL 274

Source: Lupinus angustifolius

Species: Lupinus angustifolius

Genus: Lupinus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456759|ref|XP_004146116.1| PREDICTED: uncharacterized protein LOC101209709 [Cucumis sativus] gi|449509516|ref|XP_004163611.1| PREDICTED: uncharacterized LOC101209709 [Cucumis sativus]

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/55 (96%), Positives = 53/55 (96%)

Query: 1   MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVFNTARKLIIFNGELDRIRSG 55
           MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAV NT RKLIIFNGELDRIRSG
Sbjct: 203 MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVQNTTRKLIIFNGELDRIRSG 257

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18422955|ref|NP_568702.1| uncharacterized protein [Arabidopsis thaliana] gi|14326508|gb|AAK60299.1|AF385707_1 AT5g48790/K24G6_12 [Arabidopsis thaliana] gi|18700216|gb|AAL77718.1| AT5g48790/K24G6_12 [Arabidopsis thaliana] gi|332008342|gb|AED95725.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/55 (96%), Positives = 53/55 (96%)

Query: 1   MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVFNTARKLIIFNGELDRIRSG 55
           MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAV NT RKLIIFNGELDRIRSG
Sbjct: 183 MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVVNTDRKLIIFNGELDRIRSG 237

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413926747|gb|AFW66679.1| hypothetical protein ZEAMMB73_267474 [Zea mays]

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 50/55 (90%), Positives = 52/55 (94%)

Query: 1   MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVFNTARKLIIFNGELDRIRSG 55
           MADRVKP+DE FLVAYPYFNVNEMLVVEELYKEAV  T+RKLIIFNGELDRIRSG
Sbjct: 176 MADRVKPQDETFLVAYPYFNVNEMLVVEELYKEAVVGTSRKLIIFNGELDRIRSG 230

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224034407|gb|ACN36279.1| unknown [Zea mays] gi|413926746|gb|AFW66678.1| hypothetical protein ZEAMMB73_267474 [Zea mays]

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 50/55 (90%), Positives = 52/55 (94%)

Query: 1   MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVFNTARKLIIFNGELDRIRSG 55
           MADRVKP+DE FLVAYPYFNVNEMLVVEELYKEAV  T+RKLIIFNGELDRIRSG
Sbjct: 190 MADRVKPQDETFLVAYPYFNVNEMLVVEELYKEAVVGTSRKLIIFNGELDRIRSG 244

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226494690|ref|NP_001145598.1| uncharacterized protein LOC100279074 [Zea mays] gi|195658649|gb|ACG48792.1| hypothetical protein [Zea mays]

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 50/55 (90%), Positives = 52/55 (94%)

Query: 1   MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVFNTARKLIIFNGELDRIRSG 55
           MADRVKP+DE FLVAYPYFNVNEMLVVEELYKEAV  T+RKLIIFNGELDRIRSG
Sbjct: 176 MADRVKPQDETFLVAYPYFNVNEMLVVEELYKEAVVGTSRKLIIFNGELDRIRSG 230

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	72
TAIR|locus:2156504	316	AT5G48790 "AT5G48790" [Arabido	0.763	0.174	0.963	6.1e-23

TAIR|locus:2156504 AT5G48790 "AT5G48790" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 53/55 (96%), Positives = 53/55 (96%)

Query:     1 MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVFNTARKLIIFNGELDRIRSG 55
             MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAV NT RKLIIFNGELDRIRSG
Sbjct:   183 MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVVNTDRKLIIFNGELDRIRSG 237


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.329   0.145   0.414    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       72        72   0.00091  102 3  11 22  0.40    28
                                                     29  0.43    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  460 (49 KB)
  Total size of DFA:  81 KB (2064 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.63u 0.21s 7.84t   Elapsed:  00:00:00
  Total cpu time:  7.63u 0.21s 7.84t   Elapsed:  00:00:00
  Start:  Fri May 10 05:58:55 2013   End:  Fri May 10 05:58:55 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015979 "photosynthesis" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00038743001	SubName- Full=Chromosome chr2 scaffold_97, whole genome shotgun sequence; (322 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00026253001	SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (330 aa)				•					0.438
	GSVIVG00011932001	SubName- Full=Chromosome undetermined scaffold_2569, whole genome shotgun sequence; (393 aa)				•					0.428
	GSVIVG00037644001	SubName- Full=Chromosome chr9 scaffold_90, whole genome shotgun sequence; (395 aa)				•					0.427
	GSVIVG00024719001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (396 aa)				•					0.423
	GSVIVG00020753001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (448 aa)				•					0.419
	GSVIVG00023298001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (264 aa)				•					0.415
	GSVIVG00017591001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (399 aa)				•					0.405
	GSVIVG00020113001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (218 aa)				•					0.404
	GSVIVG00014438001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (180 aa)				•					0.404
	GSVIVG00025052001	SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (226 aa)				•					0.403

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	72
pfam09353	205	pfam09353, DUF1995, Domain of unknown function (DU	1e-05

>gnl|CDD|220198 pfam09353, DUF1995, Domain of unknown function (DUF1995)

 Score = 40.0 bits (94), Expect = 1e-05
 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 6/49 (12%)

Query: 6   KPEDELFLVAYPYFNVNEMLVVEELYKEAVFNTARKLIIFNGELDRIRS 54
           K +D L LVA    ++ E+  + EL         R +I+ N  L+   +
Sbjct: 94  KIDDILILVAPQPSDLEEVEALCELAGG------RPVIMLNPRLEDAAA 136

This family of proteins are functionally uncharacterized. Length = 205

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	72
PF09353	209	DUF1995: Domain of unknown function (DUF1995); Int	97.95
PLN02842	505	nucleotide kinase	95.34

>PF09353 DUF1995: Domain of unknown function (DUF1995); InterPro: IPR018962 This family of proteins are functionally uncharacterised

Probab=97.95  E-value=9.1e-06  Score=56.68  Aligned_cols=42  Identities=24%  Similarity=0.377  Sum_probs=35.7

Q ss_pred             CCeEEEEEeccCChhHHHHHHHHHHHhhhcccceEEEEcCccccee-cc
Q 035150            8 EDELFLVAYPYFNVNEMLVVEELYKEAVFNTARKLIIFNGELDRIR-SG   55 (72)
Q Consensus         8 ~D~lfVVAYP~fNvnEml~v~eLye~a~~~~~rpiIifNGELDRiR-sg   55 (72)
                      +|-+++|+++.++.+++..+.+++.+      ||+|+|||+||.+| .|
T Consensus        98 ~~~~vvv~p~~~~l~~~e~~~~~~~~------rpvvl~Np~l~~~~~~g  140 (209)
T PF09353_consen   98 DDILVVVAPSPQELDDVEKLCEAAGG------RPVVLLNPQLEDVRSVG  140 (209)
T ss_pred             CCEEEEEECChhhHHHHHHHHHhcCC------CeEEEEecccccCCccc
Confidence            47788888888998888888877544      99999999999999 55

>PLN02842 nucleotide kinase

Probab=95.34  E-value=0.035  Score=45.37  Aligned_cols=48  Identities=21%  Similarity=0.341  Sum_probs=37.8

Q ss_pred             CCCCCCCeEEEEEeccCCh--hHHHHHHHHHHHhhhcccceEEEEcCccccee
Q 035150            3 DRVKPEDELFLVAYPYFNV--NEMLVVEELYKEAVFNTARKLIIFNGELDRIR   53 (72)
Q Consensus         3 drv~~~D~lfVVAYP~fNv--nEml~v~eLye~a~~~~~rpiIifNGELDRiR   53 (72)
                      ++++++|++|++.=|.--|  .|+-.++.+   +....+||+|++||-|+-+-
T Consensus       351 ~~~~~~d~~~i~v~P~~~v~~~~~~~~e~~---~~~~~~rpvillnp~LeD~~  400 (505)
T PLN02842        351 KEVDEEDDMFILVAPQNAVGNCIIDDLQAM---TTAAGKRPVILVNPRLKDLP  400 (505)
T ss_pred             CCCCCCCcEEEEEcCCccccccchHHHHHH---HHHhCCCeEEEECCcccccc
Confidence            5789999999999998743  355566666   33468899999999999763

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00