Citrus Sinensis ID: 035182

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-
Protein Sequence
MSSRITLKTKGKSVKGAKDSEKSRADCLKEWSTWAMKKAKVITHYGFIPLVIIIGMNSDPKPQLHQLLSPV
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHHHHHHHHHHHHHHHEEHHEEccEEEEEEEEcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccccccccHHHHcccc
Coil and Loop (DISEMBL)
mssritlktkgksvkgakdsekSRADCLKEWSTWAMKKAKVITHYGFIPLVIIIgmnsdpkpqlhqllspv
Flexible Loop (DISEMBL)
mssritlktkgksvkgakdseksradCLKEWSTWAMKKAKVITHYGFIPLVIIIGMNSDPKPQlhqllspv
Low Complexity Region (SEG)
MSSRITLKTKGKSVKGAKDSEKSRADCLKEWSTWAMKKAKVITHYGFIPLVIIIGMNSDPKPQLHQLLSPV
Disordered region (IsUnstruct)
*************************DCLKEWSTWAMKKAKVITHYGFIPLVIIIGM***************
Disordered Region (DISOPRED)
****************************KEWSTWAMKKAKVITHYGFIPLVIIIGMNSDPKPQLHQLLSPV
Disordered Region (DISEMBL)
**************************CLKEWSTWAMKKAKVITHYGFIPLVIIIGMNSDPKPQLHQLLSPV
Disordered Region (DISPRO)
***********************RADCLKEWSTWAMKKAKVITHYGFIPLVIIIGMNSDPKPQLHQ*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSSRITLKTKGKSVKGAKDSEKSRADCLKEWSTWAMKKAKVITHYGFIPLVIIIGMNSDPKPQLHQLLSPV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	71	2.2.26 [Sep-21-2011]
Q9ASY8	75	Mitochondrial import rece	yes	no	0.718	0.68	0.725	1e-17
O82067	72	Mitochondrial import rece	N/A	no	0.661	0.652	0.787	2e-15
Q3ECI7	77	Mitochondrial import rece	no	no	1.0	0.922	0.532	3e-14

>sp|Q9ASY8|TOM71_ARATH Mitochondrial import receptor subunit TOM7-1 OS=Arabidopsis thaliana GN=TOM7-1 PE=1 SV=1

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 37/51 (72%), Positives = 45/51 (88%)

Query: 21 EKSRADCLKEWSTWAMKKAKVITHYGFIPLVIIIGMNSDPKPQLHQLLSPV 71
          +KS+ D +KEW+ W++KKAKV+THYGFIPLVI +GMNSDPKP L QLLSPV
Sbjct: 25 DKSKFDVVKEWTNWSLKKAKVVTHYGFIPLVIFVGMNSDPKPHLFQLLSPV 75

Seems to act as a modulator of the dynamics of the mitochondrial protein transport machinery. Seems to promote the dissociation of subunits of the outer membrane translocase.
Arabidopsis thaliana (taxid: 3702)

>sp|O82067|TOM7A_SOLTU Mitochondrial import receptor subunit TOM7-1 OS=Solanum tuberosum GN=TOM7-1 PE=3 SV=3

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/47 (78%), Positives = 39/47 (82%)

Query: 25 ADCLKEWSTWAMKKAKVITHYGFIPLVIIIGMNSDPKPQLHQLLSPV 71
             +KEW TW  KKAKVITHYGFIPLVIIIGMNS+PKP L QLLSPV
Sbjct: 26 GKFVKEWGTWTAKKAKVITHYGFIPLVIIIGMNSEPKPSLSQLLSPV 72

Seems to act as a modulator of the dynamics of the mitochondrial protein transport machinery. Seems to promote the dissociation of subunits of the outer membrane translocase.

Solanum tuberosum (taxid: 4113)

>sp|Q3ECI7|TOM72_ARATH Mitochondrial import receptor subunit TOM7-2 OS=Arabidopsis thaliana GN=TOM7-2 PE=2 SV=1

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/77 (53%), Positives = 52/77 (67%), Gaps = 6/77 (7%)

Query: 1  MSSRITLKTKGKSVKGAKDSEKSRA------DCLKEWSTWAMKKAKVITHYGFIPLVIII 54
          M+++ TLK KGK+      S  S +         K+W+ W+++KAKV THYGFIPL+III
Sbjct: 1  MAAKSTLKIKGKAKPSKGSSSSSSSSASSKYKVFKDWTNWSLQKAKVATHYGFIPLIIII 60

Query: 55 GMNSDPKPQLHQLLSPV 71
          GMNSDPKP L  LLSPV
Sbjct: 61 GMNSDPKPHLFHLLSPV 77

Seems to act as a modulator of the dynamics of the mitochondrial protein transport machinery. Seems to promote the dissociation of subunits of the outer membrane translocase.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	71
356513231	72	PREDICTED: mitochondrial import receptor	1.0	0.986	0.763	3e-24
356524000	72	PREDICTED: mitochondrial import receptor	1.0	0.986	0.75	4e-24
255565250	75	Mitochondrial import receptor subunit TO	1.0	0.946	0.733	6e-24
225443425	73	PREDICTED: mitochondrial import receptor	1.0	0.972	0.726	1e-23
224087331	74	predicted protein [Populus trichocarpa]	1.0	0.959	0.716	5e-22
224075599	74	predicted protein [Populus trichocarpa]	1.0	0.959	0.702	3e-21
357459855	133	Mitochondrial import receptor subunit TO	0.971	0.518	0.685	2e-19
388511735	70	unknown [Medicago truncatula] gi|3885177	0.985	1.0	0.661	2e-19
388513245	72	unknown [Lotus japonicus]	1.0	0.986	0.722	1e-18
18422123	75	mitochondrial import receptor subunit TO	0.718	0.68	0.725	4e-16

>gi|356513231|ref|XP_003525317.1| PREDICTED: mitochondrial import receptor subunit TOM7-1-like isoform 1 [Glycine max] gi|356513233|ref|XP_003525318.1| PREDICTED: mitochondrial import receptor subunit TOM7-1-like isoform 2 [Glycine max]

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 55/72 (76%), Positives = 65/72 (90%), Gaps = 1/72 (1%)

Query: 1  MSSRITLKTKGKSVKGAKDSE-KSRADCLKEWSTWAMKKAKVITHYGFIPLVIIIGMNSD 59
          M+SR++LK KGKS KG+K +E +S ++CLKEW+TWAM+KAKVITHYGFIPLVIIIGMNSD
Sbjct: 1  MASRVSLKAKGKSSKGSKAAEDRSASECLKEWTTWAMRKAKVITHYGFIPLVIIIGMNSD 60

Query: 60 PKPQLHQLLSPV 71
          PKP L QLLSPV
Sbjct: 61 PKPPLSQLLSPV 72

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524000|ref|XP_003530621.1| PREDICTED: mitochondrial import receptor subunit TOM7-1-like isoform 1 [Glycine max] gi|356524002|ref|XP_003530622.1| PREDICTED: mitochondrial import receptor subunit TOM7-1-like isoform 2 [Glycine max]

 Score =  115 bits (287), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 54/72 (75%), Positives = 65/72 (90%), Gaps = 1/72 (1%)

Query: 1  MSSRITLKTKGKSVKGAKDSE-KSRADCLKEWSTWAMKKAKVITHYGFIPLVIIIGMNSD 59
          M+SR++LK KGKS KG+K +E +S ++CLKEW+TWAM+KAKVITHYGFIPLVI+IGMNSD
Sbjct: 1  MASRVSLKAKGKSSKGSKAAEDRSASECLKEWTTWAMRKAKVITHYGFIPLVIVIGMNSD 60

Query: 60 PKPQLHQLLSPV 71
          PKP L QLLSPV
Sbjct: 61 PKPPLSQLLSPV 72

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565250|ref|XP_002523617.1| Mitochondrial import receptor subunit TOM7-1, putative [Ricinus communis] gi|223537179|gb|EEF38812.1| Mitochondrial import receptor subunit TOM7-1, putative [Ricinus communis]

 Score =  114 bits (285), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 55/75 (73%), Positives = 64/75 (85%), Gaps = 4/75 (5%)

Query: 1  MSSRITLKTKGKSVKGAKDS----EKSRADCLKEWSTWAMKKAKVITHYGFIPLVIIIGM 56
          M+SR++LK+KGKS  GAK S    EKS   CLKEWSTW +KKAKVITHYGFIPLV+IIGM
Sbjct: 1  MASRVSLKSKGKSSGGAKGSKAMEEKSTIQCLKEWSTWTLKKAKVITHYGFIPLVVIIGM 60

Query: 57 NSDPKPQLHQLLSPV 71
          NS+PKPQL+QLL+PV
Sbjct: 61 NSEPKPQLYQLLTPV 75

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443425|ref|XP_002269243.1| PREDICTED: mitochondrial import receptor subunit TOM7-1 [Vitis vinifera]

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/73 (72%), Positives = 65/73 (89%), Gaps = 2/73 (2%)

Query: 1  MSSRITLKTKGKSVKGAKDSEK--SRADCLKEWSTWAMKKAKVITHYGFIPLVIIIGMNS 58
          M+SR+++K KGKS+KG+KD  +  S A CLK+WS WA+KKAKVITHYGFIP+VIIIGMNS
Sbjct: 1  MASRVSVKGKGKSIKGSKDGSEGHSTAKCLKDWSNWALKKAKVITHYGFIPMVIIIGMNS 60

Query: 59 DPKPQLHQLLSPV 71
          +PKPQL+QLLSPV
Sbjct: 61 EPKPQLYQLLSPV 73

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087331|ref|XP_002308124.1| predicted protein [Populus trichocarpa] gi|222854100|gb|EEE91647.1| predicted protein [Populus trichocarpa]

 Score =  108 bits (269), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 53/74 (71%), Positives = 62/74 (83%), Gaps = 3/74 (4%)

Query: 1  MSSRITLKTKGKSV--KGAKD-SEKSRADCLKEWSTWAMKKAKVITHYGFIPLVIIIGMN 57
          M+SR++LKTKGKS   KGAK   EKS +   KEWSTW+ KKAKVITHYGFIP++IIIGMN
Sbjct: 1  MASRVSLKTKGKSSSGKGAKGMEEKSASQYFKEWSTWSFKKAKVITHYGFIPMIIIIGMN 60

Query: 58 SDPKPQLHQLLSPV 71
          S+PKPQ+HQLLSP 
Sbjct: 61 SEPKPQIHQLLSPF 74

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075599|ref|XP_002335848.1| predicted protein [Populus trichocarpa] gi|222835808|gb|EEE74243.1| predicted protein [Populus trichocarpa]

 Score =  105 bits (262), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 52/74 (70%), Positives = 62/74 (83%), Gaps = 3/74 (4%)

Query: 1  MSSRITLKTKGKSV--KGAKD-SEKSRADCLKEWSTWAMKKAKVITHYGFIPLVIIIGMN 57
          M+SR++LKTKGKS   KGAK   EKS +  +KEWSTW  KKAKVITHYGFIP++IIIGMN
Sbjct: 1  MASRVSLKTKGKSSSGKGAKGVEEKSASQYVKEWSTWTFKKAKVITHYGFIPMIIIIGMN 60

Query: 58 SDPKPQLHQLLSPV 71
          S+PKPQ++QLLSP 
Sbjct: 61 SEPKPQIYQLLSPF 74

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357459855|ref|XP_003600208.1| Mitochondrial import receptor subunit TOM7-1 [Medicago truncatula] gi|355489256|gb|AES70459.1| Mitochondrial import receptor subunit TOM7-1 [Medicago truncatula]

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/70 (68%), Positives = 55/70 (78%), Gaps = 1/70 (1%)

Query: 1  MSSRITLKTKGKSVKGAKDSEKSRADCLKEWSTWAMKKAKVITHYGFIPLVIIIGMNSDP 60
          M+S I+LK KGKS    K  ++S  D LKEW+TW +KK KVI HYGFIPL+IIIGMNSDP
Sbjct: 1  MASTISLKAKGKS-SNKKAEDRSAIDSLKEWTTWGIKKTKVIAHYGFIPLIIIIGMNSDP 59

Query: 61 KPQLHQLLSP 70
          KPQL QLLSP
Sbjct: 60 KPQLSQLLSP 69

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511735|gb|AFK43929.1| unknown [Medicago truncatula] gi|388517719|gb|AFK46921.1| unknown [Medicago truncatula]

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/71 (66%), Positives = 57/71 (80%), Gaps = 1/71 (1%)

Query: 1  MSSRITLKTKGKSVKGAKDSEKSRADCLKEWSTWAMKKAKVITHYGFIPLVIIIGMNSDP 60
          M+ R++LK KGKS K   + ++S  D +KEW+TW MKK KVI HYGFIPL+IIIGMNSDP
Sbjct: 1  MAPRVSLKAKGKSSKKTAE-DRSVIDSVKEWTTWGMKKTKVIAHYGFIPLIIIIGMNSDP 59

Query: 61 KPQLHQLLSPV 71
          KPQ+ QLLSPV
Sbjct: 60 KPQISQLLSPV 70

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513245|gb|AFK44684.1| unknown [Lotus japonicus]

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/72 (72%), Positives = 61/72 (84%), Gaps = 1/72 (1%)

Query: 1  MSSR-ITLKTKGKSVKGAKDSEKSRADCLKEWSTWAMKKAKVITHYGFIPLVIIIGMNSD 59
          M+SR ++LK KGKS KG    EK+  +CLKEW+TW M+KAKV+THYGFIPL+IIIGMNSD
Sbjct: 1  MASRGVSLKAKGKSSKGKASEEKTACECLKEWTTWTMRKAKVVTHYGFIPLIIIIGMNSD 60

Query: 60 PKPQLHQLLSPV 71
          PKPQL QLLSPV
Sbjct: 61 PKPQLSQLLSPV 72

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18422123|ref|NP_568593.1| mitochondrial import receptor subunit TOM7-1 [Arabidopsis thaliana] gi|26397415|sp|Q9ASY8.1|TOM7A_ARATH RecName: Full=Mitochondrial import receptor subunit TOM7-1; AltName: Full=Translocase of outer membrane 7 kDa subunit 1 gi|13605535|gb|AAK32761.1|AF361593_1 AT5g41690/MBK23_23 [Arabidopsis thaliana] gi|16323286|gb|AAL15398.1| AT5g41690/MBK23_23 [Arabidopsis thaliana] gi|110740409|dbj|BAF02099.1| TOM7 - like protein [Arabidopsis thaliana] gi|332007326|gb|AED94709.1| mitochondrial import receptor subunit TOM7-1 [Arabidopsis thaliana]

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 37/51 (72%), Positives = 45/51 (88%)

Query: 21 EKSRADCLKEWSTWAMKKAKVITHYGFIPLVIIIGMNSDPKPQLHQLLSPV 71
          +KS+ D +KEW+ W++KKAKV+THYGFIPLVI +GMNSDPKP L QLLSPV
Sbjct: 25 DKSKFDVVKEWTNWSLKKAKVVTHYGFIPLVIFVGMNSDPKPHLFQLLSPV 75

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	71
TAIR|locus:505006668	75	AT5G41685 [Arabidopsis thalian	1.0	0.946	0.653	4.9e-21
TAIR|locus:2024623	77	TOM7-2 "translocase of outer m	1.0	0.922	0.571	9.5e-18
ASPGD|ASPL0000005474	53	AN10828 [Emericella nidulans (	0.605	0.811	0.386	0.00013

TAIR|locus:505006668 AT5G41685 [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 49/75 (65%), Positives = 58/75 (77%)

Query:     1 MSSRITLKT---KGKSVKGAKDSE-KSRADCLKEWSTWAMKKAKVITHYGFIPLVIIIGM 56
             M S I+LK    KGK  KGA  S+ KS+ D +KEW+ W++KKAKV+THYGFIPLVI +GM
Sbjct:     1 MESTISLKVNKGKGKGSKGASSSDDKSKFDVVKEWTNWSLKKAKVVTHYGFIPLVIFVGM 60

Query:    57 NSDPKPQLHQLLSPV 71
             NSDPKP L QLLSPV
Sbjct:    61 NSDPKPHLFQLLSPV 75

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=ISS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

TAIR|locus:2024623 TOM7-2 "translocase of outer membrane 7 kDa subunit 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 44/77 (57%), Positives = 55/77 (71%)

Query:     1 MSSRITLKTKGKSV--KGAKDSEKSRADC----LKEWSTWAMKKAKVITHYGFIPLVIII 54
             M+++ TLK KGK+   KG+  S  S A       K+W+ W+++KAKV THYGFIPL+III
Sbjct:     1 MAAKSTLKIKGKAKPSKGSSSSSSSSASSKYKVFKDWTNWSLQKAKVATHYGFIPLIIII 60

Query:    55 GMNSDPKPQLHQLLSPV 71
             GMNSDPKP L  LLSPV
Sbjct:    61 GMNSDPKPHLFHLLSPV 77

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

ASPGD|ASPL0000005474 AN10828 [Emericella nidulans (taxid:162425)]

 Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
 Identities = 17/44 (38%), Positives = 29/44 (65%)

Query:    29 KEWSTWAMKKAKVITHYGFIPLVIIIGMN-SDPKPQLHQLLSPV 71
             KE  +  +  ++V  HYG++PL++ +G   SDP+P L +L SP+
Sbjct:     9 KERISKVIDVSRVAVHYGYLPLILYLGYTYSDPRPSLFKLFSPL 52


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.130   0.387    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       71        71   0.00091  102 3  11 22  0.50    28
                                                     29  0.42    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  569 (61 KB)
  Total size of DFA:  110 KB (2073 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.54u 0.14s 8.68t   Elapsed:  00:00:01
  Total cpu time:  8.54u 0.14s 8.68t   Elapsed:  00:00:01
  Start:  Fri May 10 06:21:21 2013   End:  Fri May 10 06:21:22 2013

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0005742 "mitochondrial outer membrane translocase complex" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0015266 "protein channel activity" evidence=IEA

GO:0045040 "protein import into mitochondrial outer membrane" evidence=IEA

GO:0030150 "protein import into mitochondrial matrix" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O82067	TOM7A_SOLTU	No assigned EC number	0.7872	0.6619	0.6527	N/A	no
Q9ASY8	TOM71_ARATH	No assigned EC number	0.7254	0.7183	0.68	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00029635001 SubName- Full=Chromosome chr9 scaffold_49, whole genome shotgun sequence; (73 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	71
pfam08038	42	pfam08038, Tom7, TOM7 family	5e-16

>gnl|CDD|219708 pfam08038, Tom7, TOM7 family

 Score = 64.2 bits (157), Expect = 5e-16
 Identities = 22/42 (52%), Positives = 28/42 (66%), Gaps = 2/42 (4%)

Query: 29 KEWSTWAMKKAKVITHYGFIPLVIIIGMN--SDPKPQLHQLL 68
          KE  T  +K +KV  HYGFIPL+I +GM   ++PKP L  LL
Sbjct: 1  KERITKVLKVSKVAAHYGFIPLIIYLGMRKGAEPKPSLLSLL 42

This family consists of TOM7 family of mitochondrial import receptors. TOM7 forms part of the translocase of the outer mitochondrial membrane (TOM) complex and it appears to function as a modulator of the dynamics of the mitochondrial protein transport machinery by promoting the dissociation of subunits of the outer membrane translocase. Length = 42

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	71
PF08038	42	Tom7: TOM7 family; InterPro: IPR012621 This family	99.85
KOG4449	53	consensus Translocase of outer mitochondrial membr	99.81

>PF08038 Tom7: TOM7 family; InterPro: IPR012621 This family consists of TOM7 family of mitochondrial import receptors

Probab=99.85  E-value=4.1e-22  Score=115.34  Aligned_cols=39  Identities=49%  Similarity=0.848  Sum_probs=33.0

Q ss_pred             HhhhhhhhheeeeeEeehhhhhhhhccc--CCCcccccccc
Q 035182           30 EWSTWAMKKAKVITHYGFIPLVIIIGMN--SDPKPQLHQLL   68 (71)
Q Consensus        30 ~~~~w~~~~~k~v~HyGfIPlVIylG~~--s~PkPsl~~LL   68 (71)
                      |+.+|.++++|+++|||||||||||||+  +||+|||+|||
T Consensus         2 eri~~v~~~~k~~~HyGfIP~IlylG~~~~~~p~Psl~~LL   42 (42)
T PF08038_consen    2 ERITKVLDVAKTVFHYGFIPLILYLGFRSGADPMPSLIQLL   42 (42)
T ss_pred             hHHHHHHHhheeeEEeeehHHHHHHhhccCCCCCCcHHhhC
Confidence            3344444999999999999999999996  47889999997

TOM7 forms part of the translocase of the outer mitochondrial membrane (TOM) complex and it appears to function as a modulator of the dynamics of the mitochondrial protein transport machinery by promoting the dissociation of subunits of the outer membrane translocase [].; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane

>KOG4449 consensus Translocase of outer mitochondrial membrane complex, subunit TOM7 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=1.6e-20  Score=114.01  Aligned_cols=47  Identities=38%  Similarity=0.698  Sum_probs=39.5

Q ss_pred             cCcHHHHHHHHHHhhhhhhhheeeeeEeehhhhhhhhcc-c-CCCcccccccccCC
Q 035182           18 KDSEKSRADCLKEWSTWAMKKAKVITHYGFIPLVIIIGM-N-SDPKPQLHQLLSPV   71 (71)
Q Consensus        18 ~~se~sk~R~~k~~~~w~~~~~k~v~HyGfIPlVIylG~-~-s~PkPsl~~LLsPl   71 (71)
                      +.|||+|||++|++     +++++++||||||||||||| + ++| |+. ++||+|
T Consensus         2 klS~esKerl~k~~-----~is~~vih~G~IP~VlyLG~a~~a~~-Pn~-~~lS~l   50 (53)
T KOG4449|consen    2 KLSEESKERLVKVF-----NISKFVIHYGWIPLVLYLGFAFGARP-PNF-NTLSLL   50 (53)
T ss_pred             ccCHHHHHHHHHHe-----echheeeeechhhHHHHhhhhhcCCC-CCC-cchhhc
Confidence            57999999999999     99999999999999999999 3 555 444 555543

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00