Citrus Sinensis ID: 035213

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70
Protein Sequence
MWTLGNAGMGALQRLAKDSNPAIAAAASKTIFELKKQWEIEEGDSWRFMMNPKPAEGEETEEASDDADTN
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccccccccccccccccc
Coil and Loop (DISEMBL)
mwtlgnagmGALQRLAKDSNPAIAAAASKTIFELKKQWeieegdswrfmmnpkpaegeeteeasddadtn
Flexible Loop (DISEMBL)
MWTLGNAGMGALQRLAKDSNPAIAAAASKTIFELKKQWEIEEGDSWRFMMNpkpaegeeteeasddadtn
Low Complexity Region (SEG)
MWTLGNAGMGALQRLAKDSNPAIAAAASKTIFELKKQWEIEEGDSWRFMMNPKPaegeeteeasddadTN
Disordered region (IsUnstruct)
***********************AAAASKTIFELKKQWEIEEGDSWR***********************
Disordered Region (DISOPRED)
MWT*G**GMGALQRLAKDSNPAIAAAASKTIFELKKQWEIEEGDSWR***********************
Disordered Region (DISEMBL)
MWTLGNAGMGALQRLAKDSNPAIAAAASKTIFELKKQWEIEEGDSWRFMMNPK*****************
Disordered Region (DISPRO)
*WTLGNAGMGALQRLAKDSNPAIAAAASKTIFELKKQWEIEEGDSWRFMMNP******************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MWTLGNAGMGALQRLAKDSNPAIAAAASKTIFELKKQWEIEEGDSWRFMMNPKPAEGEETEEASDDADTN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	70
224069302	460	predicted protein [Populus trichocarpa]	0.985	0.15	0.782	2e-24
296087133	451	unnamed protein product [Vitis vinifera]	0.928	0.144	0.757	7e-22
359488301	399	PREDICTED: uncharacterized protein LOC10	0.928	0.162	0.757	1e-21
255580719	457	conserved hypothetical protein [Ricinus	0.985	0.150	0.724	2e-21
356501031	441	PREDICTED: uncharacterized protein LOC10	0.971	0.154	0.753	9e-21
356501029	440	PREDICTED: uncharacterized protein LOC10	0.971	0.154	0.753	9e-21
37783300	421	NTA15 protein [Nicotiana tabacum]	0.714	0.118	0.86	6e-18
326490541	436	predicted protein [Hordeum vulgare subsp	0.728	0.116	0.764	8e-17
226499458	454	LOC100281488 [Zea mays] gi|195614298|gb|	0.814	0.125	0.736	4e-16
357142966	442	PREDICTED: uncharacterized protein LOC10	0.957	0.151	0.623	4e-16

>gi|224069302|ref|XP_002302950.1| predicted protein [Populus trichocarpa] gi|118488010|gb|ABK95826.1| unknown [Populus trichocarpa] gi|222844676|gb|EEE82223.1| predicted protein [Populus trichocarpa]

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/69 (78%), Positives = 61/69 (88%)

Query: 1   MWTLGNAGMGALQRLAKDSNPAIAAAASKTIFELKKQWEIEEGDSWRFMMNPKPAEGEET 60
           MWTLGNAGMGALQRLA+D NPAIA AASKTI ELKKQWEI+EGDSWRFMMN KP E  ++
Sbjct: 391 MWTLGNAGMGALQRLAEDKNPAIANAASKTIHELKKQWEIQEGDSWRFMMNQKPVEEVDS 450

Query: 61  EEASDDADT 69
           +E ++DADT
Sbjct: 451 QEDNNDADT 459

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087133|emb|CBI33507.3| unnamed protein product [Vitis vinifera]

 Score =  107 bits (268), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 53/70 (75%), Positives = 57/70 (81%), Gaps = 5/70 (7%)

Query: 1   MWTLGNAGMGALQRLAKDSNPAIAAAASKTIFELKKQWEIEEGDSWRFMMNPKPAEGEET 60
           MWTLGNAGMGALQRLA+DSNPAIA AASK I+ELKKQWEIEEGDSWRF MN KP      
Sbjct: 387 MWTLGNAGMGALQRLAEDSNPAIAVAASKAIYELKKQWEIEEGDSWRFTMNQKP-----M 441

Query: 61  EEASDDADTN 70
           +EA D  DT+
Sbjct: 442 KEADDVEDTD 451

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488301|ref|XP_002276736.2| PREDICTED: uncharacterized protein LOC100251878 [Vitis vinifera]

 Score =  107 bits (267), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/70 (75%), Positives = 57/70 (81%), Gaps = 5/70 (7%)

Query: 1   MWTLGNAGMGALQRLAKDSNPAIAAAASKTIFELKKQWEIEEGDSWRFMMNPKPAEGEET 60
           MWTLGNAGMGALQRLA+DSNPAIA AASK I+ELKKQWEIEEGDSWRF MN KP      
Sbjct: 335 MWTLGNAGMGALQRLAEDSNPAIAVAASKAIYELKKQWEIEEGDSWRFTMNQKP-----M 389

Query: 61  EEASDDADTN 70
           +EA D  DT+
Sbjct: 390 KEADDVEDTD 399

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580719|ref|XP_002531181.1| conserved hypothetical protein [Ricinus communis] gi|223529222|gb|EEF31196.1| conserved hypothetical protein [Ricinus communis]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/69 (72%), Positives = 57/69 (82%)

Query: 1   MWTLGNAGMGALQRLAKDSNPAIAAAASKTIFELKKQWEIEEGDSWRFMMNPKPAEGEET 60
           MWTLGNAGMGALQRLA+D NP IAAAAS+TI+ELKKQWEI EGDSWRFMMN K  E  + 
Sbjct: 388 MWTLGNAGMGALQRLAEDRNPVIAAAASRTIYELKKQWEIGEGDSWRFMMNQKSEEKVDG 447

Query: 61  EEASDDADT 69
           +E ++  DT
Sbjct: 448 QEDNNGGDT 456

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501031|ref|XP_003519332.1| PREDICTED: uncharacterized protein LOC100794223 isoform 2 [Glycine max]

 Score =  103 bits (258), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 52/69 (75%), Positives = 58/69 (84%), Gaps = 1/69 (1%)

Query: 1   MWTLGNAGMGALQRLAKDSNPAIAAAASKTIFELKKQWEIEEGDSWRFMMNPKPAEGEET 60
           MWTLGNAGMGALQRLA+DSNPAIA AASK I+ELKKQWEIEEGDSWRFMM+    E + +
Sbjct: 373 MWTLGNAGMGALQRLAEDSNPAIATAASKAIYELKKQWEIEEGDSWRFMMDENTMEEKGS 432

Query: 61  EEASDDADT 69
            E SD+ DT
Sbjct: 433 IE-SDNEDT 440

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501029|ref|XP_003519331.1| PREDICTED: uncharacterized protein LOC100794223 isoform 1 [Glycine max]

 Score =  103 bits (258), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 52/69 (75%), Positives = 58/69 (84%), Gaps = 1/69 (1%)

Query: 1   MWTLGNAGMGALQRLAKDSNPAIAAAASKTIFELKKQWEIEEGDSWRFMMNPKPAEGEET 60
           MWTLGNAGMGALQRLA+DSNPAIA AASK I+ELKKQWEIEEGDSWRFMM+    E + +
Sbjct: 372 MWTLGNAGMGALQRLAEDSNPAIATAASKAIYELKKQWEIEEGDSWRFMMDENTMEEKGS 431

Query: 61  EEASDDADT 69
            E SD+ DT
Sbjct: 432 IE-SDNEDT 439

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|37783300|gb|AAP41026.1| NTA15 protein [Nicotiana tabacum]

 Score = 94.7 bits (234), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 43/50 (86%), Positives = 46/50 (92%)

Query: 1   MWTLGNAGMGALQRLAKDSNPAIAAAASKTIFELKKQWEIEEGDSWRFMM 50
           MWTLGNAGMGALQRLA+D NPAIAAAASKTI ELK+QWEI EGDSWR M+
Sbjct: 362 MWTLGNAGMGALQRLAEDDNPAIAAAASKTILELKRQWEIGEGDSWRLMV 411

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326490541|dbj|BAJ84934.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score = 90.9 bits (224), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 39/51 (76%), Positives = 48/51 (94%)

Query: 1   MWTLGNAGMGALQRLAKDSNPAIAAAASKTIFELKKQWEIEEGDSWRFMMN 51
           MWTLGNAGMGALQRLA+DSNPA+A++A++ I EL+KQWE+EEGDS RF+MN
Sbjct: 374 MWTLGNAGMGALQRLAQDSNPAVASSAARAIGELRKQWELEEGDSLRFVMN 424

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226499458|ref|NP_001147878.1| LOC100281488 [Zea mays] gi|195614298|gb|ACG28979.1| ATA15 protein [Zea mays]

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 42/57 (73%), Positives = 47/57 (82%)

Query: 1   MWTLGNAGMGALQRLAKDSNPAIAAAASKTIFELKKQWEIEEGDSWRFMMNPKPAEG 57
           MWTLGNAGMGALQRLA+D N A+A AAS+ I ELKKQWE+EEGDS RF+MN   A G
Sbjct: 385 MWTLGNAGMGALQRLAQDPNYAVARAASRAIDELKKQWELEEGDSLRFVMNQNLASG 441

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357142966|ref|XP_003572754.1| PREDICTED: uncharacterized protein LOC100826460 isoform 2 [Brachypodium distachyon]

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 43/69 (62%), Positives = 55/69 (79%), Gaps = 2/69 (2%)

Query: 1   MWTLGNAGMGALQRLAKDSNPAIAAAASKTIFELKKQWEIEEGDSWRFMMNPKPA--EGE 58
           MWTLGNAGMGALQRLA+DSN A+A +A++ I EL+KQWE+EEGDS RF++N   A  E +
Sbjct: 373 MWTLGNAGMGALQRLAQDSNYAVARSAARAIDELRKQWELEEGDSLRFVVNQNMASEEAD 432

Query: 59  ETEEASDDA 67
           +   A+DDA
Sbjct: 433 DGSSAADDA 441

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	70
TAIR|locus:2201547	417	AT1G66330 [Arabidopsis thalian	0.728	0.122	0.862	2.1e-18

TAIR|locus:2201547 AT1G66330 [Arabidopsis thaliana (taxid:3702)]

 Score = 227 (85.0 bits), Expect = 2.1e-18, P = 2.1e-18
 Identities = 44/51 (86%), Positives = 47/51 (92%)

Query:     1 MWTLGNAGMGALQRLAKDSNPAIAAAASKTIFELKKQWEIEEGDSWRFMMN 51
             MWTLGNAGMGALQRLA+DSNPAIAAAAS+ I  LKKQWE+EEGDS RFMMN
Sbjct:   350 MWTLGNAGMGALQRLAEDSNPAIAAAASRAINALKKQWEVEEGDSLRFMMN 400


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.127   0.396    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       70        56   0.00091  102 3  11 23  0.36    28
                                                     29  0.42    27


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  481 (51 KB)
  Total size of DFA:  92 KB (2068 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.10u 0.18s 7.28t   Elapsed:  00:00:01
  Total cpu time:  7.10u 0.18s 7.28t   Elapsed:  00:00:01
  Start:  Fri May 10 06:31:42 2013   End:  Fri May 10 06:31:43 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0010150 "leaf senescence" evidence=IMP

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

GO:0034599 "cellular response to oxidative stress" evidence=IMP

GO:0072593 "reactive oxygen species metabolic process" evidence=IMP

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_II2227 SubName- Full=Putative uncharacterized protein; (460 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	70
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	84.7

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=84.70  E-value=3.1  Score=20.91  Aligned_cols=27  Identities=22%  Similarity=0.357  Sum_probs=21.9

Q ss_pred             HHHHHhhhcCCHHHHHHHHHHHHHHHH
Q 035213           10 GALQRLAKDSNPAIAAAASKTIFELKK   36 (70)
Q Consensus        10 GALQRLAeDsnpaia~aAskai~Elkk   36 (70)
                      -.+..+.+|++|.|=.+|.++|.++-+
T Consensus         3 p~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    3 PILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            356788999999999999999988743

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	70
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	4e-04

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 35.3 bits (80), Expect = 4e-04
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 10 GALQRLAKDSNPAIAAAAS 28
           +L+  A DS PA+A  A+
Sbjct: 27 ASLKLYADDSAPALAIKAT 45

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	70
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	82.87

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=82.87  E-value=0.48  Score=25.49  Aligned_cols=34  Identities=21%  Similarity=0.488  Sum_probs=23.1

Q ss_pred             ccccccc----hHHHHHhhhcCCHHHHHHHHHHHHHHH
Q 035213            2 WTLGNAG----MGALQRLAKDSNPAIAAAASKTIFELK   35 (70)
Q Consensus         2 WTLGNAG----MGALQRLAeDsnpaia~aAskai~Elk   35 (70)
                      |+||+-+    ..+|.++-+|++|.|-.+|.+||.++.
T Consensus        44 ~~L~~~~~~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~   81 (111)
T d1te4a_          44 WIIGNFQDERAVEPLIKLLEDDSGFVRSGAARSLEQIG   81 (111)
T ss_dssp             HHHGGGCSHHHHHHHHHHHHHCCTHHHHHHHHHHHHHC
T ss_pred             HHHHhcchhhhHHHHHhhhccchhHHHHHHHHHHHHhC
Confidence            4455444    345667777888888888888887653