Citrus Sinensis ID: 035225

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70
Protein Sequence
MATFCSGKTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVSKPPVVG
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHccccEEEEEcccccccccccccEEEEEEcccccEEcccccc
Secondary Structure Prediction (SSPRO)
cccccccccEcHHHcccEHHHHHHHHHHHccccEEEEEEccccccccccccEEEEEEccccEEccccEEc
Coil and Loop (DISEMBL)
matfcsgktswpeLVGEIGAVAAATIKlqnpivnpiilmlgtpvtrefrcDRVWVWVDAigrvskppvvg
Flexible Loop (DISEMBL)
matfcsgktswpeLVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDaigrvskppvvg
Low Complexity Region (SEG)
MATFCSGKTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVSKPPVVG
Disordered region (IsUnstruct)
****CSGKTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRV*******
Disordered Region (DISOPRED)
*****SG*TSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVSKPPVVG
Disordered Region (DISEMBL)
********TSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVSKPPVVG
Disordered Region (DISPRO)
*******KTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVSKPPVVG
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MATFCSGKTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVSKPPVVG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	70	2.2.26 [Sep-21-2011]
P24076	68	Glu S.griseus protease in	N/A	no	0.971	1.0	0.529	7e-15
P19873	68	Inhibitor of trypsin and	N/A	no	0.971	1.0	0.544	3e-14
P82381	69	Proteinase inhibitor OS=L	N/A	no	0.928	0.942	0.492	4e-12
P80211	69	Trypsin/subtilisin inhibi	N/A	no	0.757	0.768	0.528	2e-09
P16231	111	Wound-induced proteinase	N/A	no	0.928	0.585	0.469	2e-09
Q6XNP7	70	Protease inhibitor HPI OS	N/A	no	1.0	1.0	0.414	2e-08
P01052	71	Chymotrypsin inhibitor I,	N/A	no	0.942	0.929	0.432	2e-08
Q00783	107	Proteinase inhibitor 1 OS	N/A	no	0.942	0.616	0.432	4e-08
P05118	111	Wound-induced proteinase	N/A	no	0.928	0.585	0.424	1e-07
P86971	86	Trypsin inhibitor OS=Fago	N/A	no	0.914	0.744	0.492	1e-07

>sp|P24076|BGIA_MOMCH Glu S.griseus protease inhibitor OS=Momordica charantia PE=1 SV=1

 Score = 79.3 bits (194), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 48/68 (70%)

Query: 3  TFCSGKTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGR 62
          + C GK SWP+LVG  GA A A I+ +NP V  +I+ +G+PVT +FRCDRV VWV   G 
Sbjct: 1  SQCQGKRSWPQLVGSTGAAAKAVIERENPRVRAVIVRVGSPVTADFRCDRVRVWVTERGI 60

Query: 63 VSKPPVVG 70
          V++PP +G
Sbjct: 61 VARPPAIG 68

Competitively inhibits Glu S.griseus protease by forming probably a 1:1 complex. BGIA has no inhibitory activity against 2 other acidic amino acid-specific endopeptidases (S.aureus protease V8 and B.subtilis proteinase), chymotrypsin, trypsin, pancreatic elastase, and papain, although subtilisin Carlsberg was strongly inhibited.
Momordica charantia (taxid: 3673)

>sp|P19873|ITH5_CUCMA Inhibitor of trypsin and hageman factor OS=Cucurbita maxima PE=1 SV=1

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/68 (54%), Positives = 48/68 (70%)

Query: 3  TFCSGKTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGR 62
          + C GK+SWP LVG  G+VA A I+ QNP V  +IL  GTPVT++FRC+RV +WV+  G 
Sbjct: 1  SSCPGKSSWPHLVGVGGSVAKAIIERQNPNVKAVILEEGTPVTKDFRCNRVRIWVNKRGL 60

Query: 63 VSKPPVVG 70
          V  PP +G
Sbjct: 61 VVSPPRIG 68

Specifically inhibits both trypsin and activated Hageman factor.

Cucurbita maxima (taxid: 3661)

>sp|P82381|ICI_LINUS Proteinase inhibitor OS=Linum usitatissimum PE=1 SV=1

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 47/65 (72%)

Query: 5  CSGKTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVS 64
          C GK +WPELVG+ G +AAAT++ +N  V+ I+L  G+ +T++FRCDRVWV V+  G V+
Sbjct: 4  CPGKNAWPELVGKSGNMAAATVERENRNVHAIVLKEGSAMTKDFRCDRVWVIVNDHGVVT 63

Query: 65 KPPVV 69
            P +
Sbjct: 64 SVPHI 68

In vitro, strong inhibitor of bovine beta-trypsin, weak inhibitor of alpha-chymotrypsin, subtilisin BPN', subtilisin Carlsberg and cathepsin G.

Linum usitatissimum (taxid: 4006)

>sp|P80211|ATSI_AMACA Trypsin/subtilisin inhibitor OS=Amaranthus caudatus PE=1 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 34/53 (64%)

Query: 2  ATFCSGKTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVW 54
          A  C GK  WPELVGE G  AAA I+ +NP V  I+    +  T++FRCDRVW
Sbjct: 1  ARECPGKQEWPELVGEYGYKAAAIIERENPNVRSIVKHERSGFTKDFRCDRVW 53

Inhibitor of trypsin, chymotrypsin, subtilisin, etc.

Amaranthus caudatus (taxid: 3567)

>sp|P16231|ICI1_SOLPE Wound-induced proteinase inhibitor 1 OS=Solanum peruvianum PE=3 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 1/66 (1%)

Query: 5   CSGKTSWPELVGEIGAVAAATIKLQNP-IVNPIILMLGTPVTREFRCDRVWVWVDAIGRV 63
           C GK  WPEL+G     A   I+ +NP I N  IL+ G+PVT++FRCDRV ++V+ +G V
Sbjct: 45  CKGKQFWPELIGVPALYAKGIIEKENPSITNIPILLNGSPVTKDFRCDRVRLFVNILGDV 104

Query: 64  SKPPVV 69
            + P V
Sbjct: 105 VQIPRV 110

Solanum peruvianum (taxid: 4082)

>sp|Q6XNP7|HPI_HEVBR Protease inhibitor HPI OS=Hevea brasiliensis GN=PI1 PE=1 SV=2

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 43/70 (61%)

Query: 1  MATFCSGKTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAI 60
          MA+ C  K SWPELVG  G +AA  I+ +N  V  I++  G P+T++   +RV V+VD  
Sbjct: 1  MASQCPVKNSWPELVGTNGDIAAGIIQTENANVKAIVVKEGLPITQDLNFNRVRVFVDEN 60

Query: 61 GRVSKPPVVG 70
            V++ P +G
Sbjct: 61 RVVTQVPAIG 70

Inhibitor of serine proteases, strongly inhibits subtilisin A and weakly inhibits trypsin. Does not inhibit chymotrypsin, papain, pepsin, pronase E, protease type XIII and thermolysin. HPI-1 inhibits subtilisin A with an Ki of 0.21 nM. HPI-2a inhibits subtilisin A with an Ki of 0.08 nM. HPI-2b inhibits subtilisin A with an Ki of 0.1 nM.

Hevea brasiliensis (taxid: 3981)

>sp|P01052|ICIA_SOLTU Chymotrypsin inhibitor I, A, B and C subunits OS=Solanum tuberosum PE=1 SV=1

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 1/67 (1%)

Query: 5  CSGKTSWPELVGEIGAVAAATIKLQNPIV-NPIILMLGTPVTREFRCDRVWVWVDAIGRV 63
          C GK  WPEL+G    +A   I+ QN ++ N  IL+ G+PVT +FRC+RV ++ D +G V
Sbjct: 5  CDGKLQWPELIGVPTKLAKEIIEKQNSLISNVHILLNGSPVTMDFRCNRVRLFDDILGSV 64

Query: 64 SKPPVVG 70
           + P V 
Sbjct: 65 VQIPRVA 71

Inhibits both chymotrypsin and trypsin.

Solanum tuberosum (taxid: 4113)

>sp|Q00783|ICI1_SOLTU Proteinase inhibitor 1 OS=Solanum tuberosum PE=3 SV=1

 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 1/67 (1%)

Query: 5   CSGKTSWPELVGEIGAVAAATIKLQNPIV-NPIILMLGTPVTREFRCDRVWVWVDAIGRV 63
           C GK  WPEL+G    +A   I+ +N ++ N  IL+ G+PVT + RCDRV ++ + +G V
Sbjct: 41  CKGKLRWPELIGVPTKLAKGIIEKENSLISNVHILLNGSPVTLDIRCDRVRLFDNILGYV 100

Query: 64  SKPPVVG 70
              PVVG
Sbjct: 101 VDIPVVG 107

Solanum tuberosum (taxid: 4113)

>sp|P05118|ICI1_SOLLC Wound-induced proteinase inhibitor 1 OS=Solanum lycopersicum GN=PIIF PE=2 SV=1

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 1/66 (1%)

Query: 5   CSGKTSWPELVGEIGAVAAATIKLQNP-IVNPIILMLGTPVTREFRCDRVWVWVDAIGRV 63
           C GK  WPEL+G    +A   I+ +NP I N  IL+ G+P+T ++ CDRV ++ + +G V
Sbjct: 45  CEGKQMWPELIGVPTKLAKEIIEKENPSITNIPILLSGSPITLDYLCDRVRLFDNILGFV 104

Query: 64  SKPPVV 69
            + PVV
Sbjct: 105 VQMPVV 110

Solanum lycopersicum (taxid: 4081)

>sp|P86971|ITI_FAGTA Trypsin inhibitor OS=Fagopyrum tataricum PE=1 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 7  GKTSWPELVGEIGAVAAATIKLQNPIVN----PIILMLGTPVTREFRCDRVWVWVDAIGR 62
          GK SWPELVG  G  AAATI  +N  V     P +  L    T +FRCDRV V ++ IG 
Sbjct: 18 GKQSWPELVGTKGKTAAATIDKENTHVTAVLCPPLTTLAACRTFDFRCDRVRVLINRIGG 77

Query: 63 -VSKPPVVG 70
           V+K P VG
Sbjct: 78 VVTKTPTVG 86

Serine protease inhibitor which is active against trypsin. Displays strong antifungal activity against a number of phytopathogenic fungi including M.melonis, A.cucumerina, A.solani, C.glaeosporioides and P.capsici.

Fagopyrum tataricum (taxid: 62330)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	70
399240828	69	proteinase inhibitor [Gossypium arboreum	0.942	0.956	0.606	4e-16
255559977	70	Proteinase inhibitor, putative [Ricinus	1.0	1.0	0.571	3e-15
22759723	67	protease inhibitor 2 [Zinnia elegans]	0.928	0.970	0.584	3e-15
284433788	70	proteinase inhibitor [Jatropha curcas]	0.985	0.985	0.579	5e-15
224102775	72	predicted protein [Populus trichocarpa]	0.971	0.944	0.573	2e-14
224111032	72	predicted protein [Populus trichocarpa]	0.971	0.944	0.573	2e-14
255559975	69	Proteinase inhibitor, putative [Ricinus	0.942	0.956	0.575	3e-14
357441047	72	Inhibitor of trypsin and hageman factor	0.942	0.916	0.606	5e-14
357494051	70	protease inhibitor [Medicago truncatula]	1.0	1.0	0.571	1e-13
351727373	70	protease inhibitor-like [Glycine max] gi	1.0	1.0	0.542	2e-13

>gi|399240828|gb|AFP43221.1| proteinase inhibitor [Gossypium arboreum] gi|399240830|gb|AFP43222.1| proteinase inhibitor [Gossypium arboreum]

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/66 (60%), Positives = 50/66 (75%)

Query: 5  CSGKTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVS 64
          C GK SWPELVG+ G  A  TI+ +N  V+ I+L+ GTPVTR+FRCDRVWVWVD+ G V 
Sbjct: 4  CPGKNSWPELVGKDGEGAKTTIERENSNVDAIVLLDGTPVTRDFRCDRVWVWVDSNGHVV 63

Query: 65 KPPVVG 70
          +PP +G
Sbjct: 64 RPPTIG 69

Source: Gossypium arboreum

Species: Gossypium arboreum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559977|ref|XP_002521007.1| Proteinase inhibitor, putative [Ricinus communis] gi|223539844|gb|EEF41424.1| Proteinase inhibitor, putative [Ricinus communis]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 50/70 (71%)

Query: 1  MATFCSGKTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAI 60
          M+  C GK SWPELVG  G  AAAT++ +N  V+ I+L  GTPVTR+FRC+RVWVWVD  
Sbjct: 1  MSNVCLGKDSWPELVGAKGDDAAATVEKENKHVHAIVLKEGTPVTRDFRCNRVWVWVDEN 60

Query: 61 GRVSKPPVVG 70
          G V++ P  G
Sbjct: 61 GVVTRAPKTG 70

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22759723|dbj|BAC10910.1| protease inhibitor 2 [Zinnia elegans]

 Score = 85.5 bits (210), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/65 (58%), Positives = 51/65 (78%)

Query: 5  CSGKTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVS 64
          C GK+SWPELVGE G  A  TI+ +NP+VN I+L+ GT VT++FRCDRVWVWV++ G V 
Sbjct: 2  CKGKSSWPELVGEKGEAARLTIEKENPLVNAIVLLDGTGVTKDFRCDRVWVWVNSKGIVI 61

Query: 65 KPPVV 69
          + P++
Sbjct: 62 RTPII 66

Source: Zinnia elegans

Species: Zinnia violacea

Genus: Zinnia

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|284433788|gb|ADB85100.1| proteinase inhibitor [Jatropha curcas]

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 40/69 (57%), Positives = 51/69 (73%)

Query: 1  MATFCSGKTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAI 60
          MA+ C GK+SWPEL+G  G  AAA I+ +N  VN I+L  GTPVTR+FRCDRVWVWV+  
Sbjct: 1  MASECPGKSSWPELLGANGKAAAALIEKENRHVNAIVLKEGTPVTRDFRCDRVWVWVNEC 60

Query: 61 GRVSKPPVV 69
          G V + P++
Sbjct: 61 GVVVRVPII 69

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102775|ref|XP_002334124.1| predicted protein [Populus trichocarpa] gi|222869703|gb|EEF06834.1| predicted protein [Populus trichocarpa]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 51/68 (75%)

Query: 3  TFCSGKTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGR 62
          T C GK+SWPEL+G  G VAAATI+ +NP+V  II++ G+ V+ +FRCDRVWVWVD  G 
Sbjct: 5  TTCQGKSSWPELLGAEGKVAAATIERENPLVEAIIVLDGSEVSLDFRCDRVWVWVDERGI 64

Query: 63 VSKPPVVG 70
          V + P +G
Sbjct: 65 VIEVPRIG 72

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111032|ref|XP_002315724.1| predicted protein [Populus trichocarpa] gi|222864764|gb|EEF01895.1| predicted protein [Populus trichocarpa]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 51/68 (75%)

Query: 3  TFCSGKTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGR 62
          T C GK+SWPEL+G  G VAAATI+ +NP+V  II++ G+ V+ +FRCDRVWVWVD  G 
Sbjct: 5  TTCQGKSSWPELLGAEGKVAAATIERENPLVEAIIVLDGSKVSLDFRCDRVWVWVDERGI 64

Query: 63 VSKPPVVG 70
          V + P +G
Sbjct: 65 VIEVPRIG 72

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559975|ref|XP_002521006.1| Proteinase inhibitor, putative [Ricinus communis] gi|223539843|gb|EEF41423.1| Proteinase inhibitor, putative [Ricinus communis]

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 47/66 (71%)

Query: 5  CSGKTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVS 64
          C GK SWPELVG  G  AAA I+ +N  V+ I+L  GTPVT++FRC RVWVWVD  G V+
Sbjct: 4  CLGKNSWPELVGANGDEAAAAIEKENKYVDAIVLKEGTPVTKDFRCSRVWVWVDENGVVT 63

Query: 65 KPPVVG 70
          + P +G
Sbjct: 64 RTPTIG 69

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357441047|ref|XP_003590801.1| Inhibitor of trypsin and hageman factor [Medicago truncatula] gi|355479849|gb|AES61052.1| Inhibitor of trypsin and hageman factor [Medicago truncatula]

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 40/66 (60%), Positives = 48/66 (72%)

Query: 5  CSGKTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVS 64
          C GK+SWPELVG  G VA ATI+ +NP+VN II+  G+ V  +FRCDRVWVWVD  G V 
Sbjct: 7  CKGKSSWPELVGVEGKVAEATIERENPLVNAIIVPEGSAVILDFRCDRVWVWVDKDGIVF 66

Query: 65 KPPVVG 70
          K P +G
Sbjct: 67 KVPTIG 72

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357494051|ref|XP_003617314.1| protease inhibitor [Medicago truncatula] gi|355518649|gb|AET00273.1| protease inhibitor [Medicago truncatula]

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 50/70 (71%)

Query: 1  MATFCSGKTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAI 60
          M+  C GK SWPELVG  G VA ATI+ +NP+VN II+  G+ VT +FRCDRV VWVD  
Sbjct: 1  MSDECKGKNSWPELVGVEGKVAEATIQSENPLVNAIIVPEGSFVTADFRCDRVRVWVDKD 60

Query: 61 GRVSKPPVVG 70
          G V + P++G
Sbjct: 61 GIVYQVPIIG 70

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727373|ref|NP_001238694.1| protease inhibitor-like [Glycine max] gi|168259030|gb|ACA23204.1| putative protease inhibitor [Glycine max]

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/70 (54%), Positives = 49/70 (70%)

Query: 1  MATFCSGKTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAI 60
          M+  C GK+SWPELVG  G VA ATI+ +NP+V+ II+  G  V  +FRCDRVWVW+D  
Sbjct: 1  MSDDCKGKSSWPELVGVQGTVAEATIERENPLVDAIIVPEGNMVITDFRCDRVWVWIDKD 60

Query: 61 GRVSKPPVVG 70
          G V + P +G
Sbjct: 61 GIVKEVPHIG 70

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	70
TAIR|locus:2064981	70	AT2G38870 [Arabidopsis thalian	1.0	1.0	0.5	9.1e-13
UNIPROTKB|Q6XNP7	70	PI1 "Protease inhibitor HPI" [	1.0	1.0	0.414	2.2e-09
TAIR|locus:2102822	85	AT3G46860 [Arabidopsis thalian	0.9	0.741	0.412	2e-08
UNIPROTKB|Q40059	84	Ica-2 "Chymotrypsin inhibitor	0.9	0.75	0.428	5.3e-08
TAIR|locus:2158397	103	AT5G43570 [Arabidopsis thalian	0.871	0.592	0.377	0.00017

TAIR|locus:2064981 AT2G38870 [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 35/70 (50%), Positives = 44/70 (62%)

Query:     1 MATFCSGKTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAI 60
             M+T C  K SWPEL G  G  AA  I+ +NP VN  +++ G+PVT +FRCDRV V+VD  
Sbjct:     1 MSTECPRKNSWPELTGTNGDYAAVVIERENPTVNAAVILDGSPVTADFRCDRVRVFVDGN 60

Query:    61 GRVSKPPVVG 70
               V K P  G
Sbjct:    61 RIVVKTPKSG 70

GO:0004867 "serine-type endopeptidase inhibitor activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0009611 "response to wounding" evidence=IEA;ISS

GO:0005618 "cell wall" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IMP

GO:0015824 "proline transport" evidence=RCA

UNIPROTKB|Q6XNP7 PI1 "Protease inhibitor HPI" [Hevea brasiliensis (taxid:3981)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 29/70 (41%), Positives = 43/70 (61%)

Query:     1 MATFCSGKTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAI 60
             MA+ C  K SWPELVG  G +AA  I+ +N  V  I++  G P+T++   +RV V+VD  
Sbjct:     1 MASQCPVKNSWPELVGTNGDIAAGIIQTENANVKAIVVKEGLPITQDLNFNRVRVFVDEN 60

Query:    61 GRVSKPPVVG 70
               V++ P +G
Sbjct:    61 RVVTQVPAIG 70

GO:0004867 "serine-type endopeptidase inhibitor activity" evidence=IDA

TAIR|locus:2102822 AT3G46860 [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 26/63 (41%), Positives = 40/63 (63%)

Query:     8 KTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVSKPP 67
             K  WPELVG+ G +A  TI+ +NP V  I+L  G      F C+RV+V++ + G+V+  P
Sbjct:    23 KYRWPELVGKNGQLAKMTIERENPNVLAIVLRYGEKRIENFCCNRVFVYLGSNGQVADAP 82

Query:    68 VVG 70
             ++G
Sbjct:    83 MIG 85

GO:0004867 "serine-type endopeptidase inhibitor activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0009611 "response to wounding" evidence=IEA;ISS

GO:0006952 "defense response" evidence=ISS

UNIPROTKB|Q40059 Ica-2 "Chymotrypsin inhibitor 2" [Hordeum vulgare (taxid:4513)]

 Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 27/63 (42%), Positives = 37/63 (58%)

Query:     8 KTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVSKPP 67
             KT WPELVG+    A   I    P    I+L +GT VT E+R DRV ++VD +  +++ P
Sbjct:    22 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTMEYRIDRVRLFVDRLDNIAQVP 81

Query:    68 VVG 70
              VG
Sbjct:    82 RVG 84

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2158397 AT5G43570 [Arabidopsis thaliana (taxid:3702)]

 Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
 Identities = 23/61 (37%), Positives = 31/61 (50%)

Query:     8 KTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVSKPP 67
             K+SWPELVG  G      I  +N  V   I+     V     CDRV+V V+  G V++ P
Sbjct:    14 KSSWPELVGRRGEEVKEIIDRENTKVTAKIISENAVVLAVVICDRVYVRVNDQGIVTRTP 73

Query:    68 V 68
             +
Sbjct:    74 I 74


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.139   0.456    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       70        70   0.00091  102 3  11 22  0.46    28
                                                     29  0.41    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  558 (59 KB)
  Total size of DFA:  104 KB (2070 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.44u 0.09s 7.53t   Elapsed:  00:00:01
  Total cpu time:  7.44u 0.09s 7.53t   Elapsed:  00:00:01
  Start:  Fri May 10 06:34:45 2013   End:  Fri May 10 06:34:46 2013

GO:0004867 "serine-type endopeptidase inhibitor activity" evidence=IEA;ISS

GO:0005575 "cellular_component" evidence=ND

GO:0009611 "response to wounding" evidence=IEA;ISS

GO:0006952 "defense response" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P19873	ITH5_CUCMA	No assigned EC number	0.5441	0.9714	1.0	N/A	no
P24076	BGIA_MOMCH	No assigned EC number	0.5294	0.9714	1.0	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0144003401 hypothetical protein (72 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	70
pfam00280	63	pfam00280, potato_inhibit, Potato inhibitor I fami	8e-25

>gnl|CDD|201130 pfam00280, potato_inhibit, Potato inhibitor I family

 Score = 86.8 bits (216), Expect = 8e-25
 Identities = 33/63 (52%), Positives = 46/63 (73%)

Query: 8  KTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVSKPP 67
          KTSWPELVG+ G  A A I+ +NP V+ ++L  G+PVT +FRC+RV V+V+  G V + P
Sbjct: 1  KTSWPELVGKTGEEAKAIIEKENPDVDVVVLPEGSPVTADFRCNRVRVFVNDNGIVVRTP 60

Query: 68 VVG 70
          V+G
Sbjct: 61 VIG 63

Length = 63

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	70
PF00280	63	potato_inhibit: Potato inhibitor I family; InterPr	100.0
PF11720	60	Inhibitor_I78: Peptidase inhibitor I78 family; Int	99.76

>PF00280 potato_inhibit: Potato inhibitor I family; InterPro: IPR000864 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively

Probab=100.00  E-value=1.8e-34  Score=165.99  Aligned_cols=63  Identities=54%  Similarity=0.887  Sum_probs=59.4

Q ss_pred             CCCcccccccchHHHHHHHHhhCCCCceEEecCCCcccCCccCCeEEEEeCCCCcEEcCCccC
Q 035225            8 KTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVSKPPVVG   70 (70)
Q Consensus         8 k~~WpelVG~~~~~A~~~I~~~~p~~~v~vl~pg~~vT~df~~~RV~v~vD~~g~V~~vP~iG   70 (70)
                      |+|||||||+++++|+++|++|||++++.++++|+++|+|||||||+||+|++|+|+++|+||
T Consensus         1 K~sWPELVG~~~~~A~~~I~~e~P~v~v~vlp~gs~vt~df~~~RVrv~vd~~~~V~~~P~iG   63 (63)
T PF00280_consen    1 KTSWPELVGKSGEEAKAIIERENPDVTVVVLPEGSPVTMDFRCDRVRVFVDSNGIVVRVPRIG   63 (63)
T ss_dssp             -SB-GGGTTSBHHHHHHHHHHHSTTSEEEEEETTSEEESSBETTEEEEEEETTSBBES-SEEE
T ss_pred             CCCCchhcCCCHHHHHHHHHHHCCCCeEEEEeCCCCcCCCcCCCEEEEEECCCCeEEeCCCcC
Confidence            799999999999999999999999999999999999999999999999999999999999998

In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This family of proteinase inhibitors belong to MEROPS inhibitor family I13, clan IG. They inhibit peptidases of the S1 (IPR001254 from INTERPRO) and S8 (IPR000209 from INTERPRO) families []. Potato inhibitor type I sequences are not solely restricted to potatoes but are found in other plant species for example: barley endosperm chymotrypsin inhibitor [], and pumpkin trypsin inhibitor. Exceptions are found in leech's, e.g.Hirudo medicinalis (Medicinal leech), but not other metazoa []. In general, the proteins have retained a specificity towards chymotrypsin-like and elastase-like proteases []. Structurally these inhibitors are small (60 to 90 residues) and in contrast with other families of protease inhibitors, they lack disulphide bonds. The inhibitor is a wedge-shaped molecule, its pointed edge formed by the protease-binding loop, which contains the scissile bond. The loop binds tightly to the protease active site, subsequent cleavage of the scissile bond causing inhibition of the enzyme []. The inhibitors (designated type I and II) are synthesised in potato tubers, increasing in concentration as the tuber develops. Synthesis of the inhibitors throughout the plant is also induced by leaf damage; this systemic response being triggered by the release of a putative plant hormone []. Examples found in the bacteria and archaea are probable false positives.; GO: 0004867 serine-type endopeptidase inhibitor activity, 0009611 response to wounding; PDB: 1TEC_I 1SBN_I 1ACB_I 1EGP_A 3TEC_I 2SEC_I 1EGL_A 2TEC_I 1SIB_I 1MEE_I ....

>PF11720 Inhibitor_I78: Peptidase inhibitor I78 family; InterPro: IPR021719 This family includes Aspergillus elastase inhibitor and belongs to MEROPS peptidase inhibitor family I78

Probab=99.76  E-value=2.6e-19  Score=101.63  Aligned_cols=57  Identities=26%  Similarity=0.311  Sum_probs=47.2

Q ss_pred             CCCCCcccccccchHHHHHHHHhhCCCCceEEecCCCcccCCccCCeEEEEeCCCCcEEcC
Q 035225            6 SGKTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVSKP   66 (70)
Q Consensus         6 ~~k~~WpelVG~~~~~A~~~I~~~~p~~~v~vl~pg~~vT~df~~~RV~v~vD~~g~V~~v   66 (70)
                      =+.+....|||++++++...-.    ...+|||+||+++|||||+|||||++|++|+|+++
T Consensus         1 C~A~~~q~lvGq~~~~~~~~~~----~~~~Rvi~Pg~~vTmDyr~dRLnv~~D~~g~I~~v   57 (60)
T PF11720_consen    1 CGAAAAQSLVGQPASAAEREEL----AETVRVIRPGDAVTMDYRPDRLNVEVDDDGVITRV   57 (60)
T ss_pred             CCHHHHHHhhCCCccccccccc----ccceEEeCCCCcCcccCCCCcEEEEECCCCcEEEE
Confidence            0566778999999987644322    44689999999999999999999999999999875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	70
1vbw_A	68	Crystal Structure Of Bitter Gourd Trypsin Inhibitor		2e-15
1mit_A	69	Recombinant Cucurbita Maxima Trypsin Inhibitor V (R		2e-15
1tin_A	69	Three-Dimensional Structure In Solution Of Cucurbit		3e-15
3rdy_A	79	Crystal Structure Of Buckwheat Trypsin Inhibitor Rb		2e-13
1dwm_A	70	Solution Structure Of Linum Usitatissinum Trypsin I		3e-13
1ypa_I	64	Direct Observation Of Better Hydration At The N-Ter		3e-08
1ypc_I	64	Direct Observation Of Better Hydration At The N-Ter		4e-08
1ypb_I	64	Direct Observation Of Better Hydration At The N-Ter		5e-08
1tm3_I	64	Crystal Structure Of The Complex Of Subtilisin Bpn'		6e-08
1y4a_I	64	Crystal Structure Of The Complex Of Subtilisin Bpn'		1e-07
1lw6_I	64	Crystal Structure Of The Complex Of Subtilisin Bpn'		1e-07
1tm7_I	64	Crystal Structure Of The Complex Of Subtilisin Bpn'		2e-07
1coa_I	64	The Effect Of Cavity Creating Mutations In The Hydr		2e-07
3ci2_A	66	Refinement Of The Three-Dimensional Solution Struct		2e-07
1tm1_I	64	Crystal Structure Of The Complex Of Subtilisin Bpn'		2e-07
1tm5_I	64	Crystal Structure Of The Complex Of Subtilisin Bpn'		2e-07
1hym_A	45	Hydrolyzed Trypsin Inhibitor (Cmti-V, Minimized Ave		2e-07
1y3d_I	64	Crystal Structure Of The Complex Of Subtilisin Bpn'		2e-07
2ci2_I	83	Crystal And Molecular Structure Of The Serine Prote		2e-07
1tmg_I	64	Crystal Structure Of The Complex Of Subtilisin Bpn'		3e-07
1tm4_I	64	Crystal Structure Of The Complex Of Subtilsin Bpn'w		3e-07
1y3f_I	64	Crystal Structure Of The Complex Of Subtilisin Bpn'		6e-07
1y1k_I	64	Crystal Structure Of The Complex Of Subtilisin Bpn'		7e-07
1y3b_I	64	Crystal Structure Of The Complex Of Subtilisin Bpn'		1e-06
1to1_I	64	Crystal Structure Of The Complex Of Subtilisin Bpn'		1e-06
1y34_I	64	Crystal Structure Of The Complex Of Subtilisin Bpn'		1e-06
1y33_I	64	Crystal Structure Of The Complex Of Subtilisin Bpn'		1e-06
1y48_I	64	Crystal Structure Of The Complex Of Subtilisin Bpn'		2e-06
1y3c_I	64	Crystal Structure Of The Complex Of Subtilisin Bpn'		2e-06
1sbn_I	70	Refined Crystal Structures Of Subtilisin Novo In Co		3e-04

>pdb|1VBW|A Chain A, Crystal Structure Of Bitter Gourd Trypsin Inhibitor Length = 68

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 48/68 (70%)
Query: 3  TFCSGKTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGR 62
          + C GK+SWP+LVG  GA A A I+ +NP V  +I+ +G+  T++FRCDRV VWV   G 
Sbjct: 1  SRCQGKSSWPQLVGSTGAAAKAVIERENPRVRAVIIKVGSGATKDFRCDRVRVWVTERGI 60
Query: 63 VSKPPVVG 70
          V++PP +G
Sbjct: 61 VARPPTIG 68

>pdb|1MIT|A Chain A, Recombinant Cucurbita Maxima Trypsin Inhibitor V (Rcmti-V) (Nmr, Minimized Average Structure) Length = 69

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/69 (53%), Positives = 48/69 (69%)
Query: 2  ATFCSGKTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIG 61
           + C GK+SWP LVG  G+VA A I+ QNP V  +IL  GTPVT++FRC+RV +WV+  G
Sbjct: 1  GSSCPGKSSWPHLVGVGGSVAKAIIERQNPNVKAVILEEGTPVTKDFRCNRVRIWVNKRG 60
Query: 62 RVSKPPVVG 70
           V  PP +G
Sbjct: 61 LVVSPPRIG 69

>pdb|1TIN|A Chain A, Three-Dimensional Structure In Solution Of Cucurbita Maxima Trypsin Inhibitor-V Determined By Nmr Spectroscopy Length = 69

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/68 (54%), Positives = 48/68 (70%)
Query: 3  TFCSGKTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGR 62
          + C GK+SWP LVG  G+VA A I+ QNP V  +IL  GTPVT++FRC+RV +WV+  G 
Sbjct: 2  SSCPGKSSWPHLVGVGGSVAKAIIERQNPNVKAVILEEGTPVTKDFRCNRVRIWVNKRGL 61
Query: 63 VSKPPVVG 70
          V  PP +G
Sbjct: 62 VVSPPRIG 69

>pdb|3RDY|A Chain A, Crystal Structure Of Buckwheat Trypsin Inhibitor Rbti At 1.84 Angstrom Resolution Length = 79

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/65 (55%), Positives = 43/65 (66%)
Query: 5  CSGKTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVS 64
          CSGK  WPELVGE G+ AA  I+ +N  V  I+L  G+ V R+ RCDRVWV+VD  G V 
Sbjct: 14 CSGKQEWPELVGERGSKAAKIIENENEDVRAIVLPEGSAVPRDLRCDRVWVFVDERGVVV 73
Query: 65 KPPVV 69
            PVV
Sbjct: 74 DTPVV 78

>pdb|1DWM|A Chain A, Solution Structure Of Linum Usitatissinum Trypsin Inhibitor (Luti) Length = 70

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 47/65 (72%)
Query: 5  CSGKTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVS 64
          C GK +WPELVG+ G +AAAT++ +N  V+ I+L  G+ +T++FRCDRVWV V+  G V+
Sbjct: 5  CPGKNAWPELVGKSGNMAAATVERENRNVHAIVLKEGSAMTKDFRCDRVWVIVNDHGVVT 64
Query: 65 KPPVV 69
            P +
Sbjct: 65 SVPHI 69

>pdb|1YPA|I Chain I, Direct Observation Of Better Hydration At The N-Terminus Of An Alpha-Helix With Glycine Rather Than Alanine As N-Cap Length = 64

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 38/63 (60%)
Query: 8  KTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVSKPP 67
          KT WPELVG+  A A   I    P    I+L +GT VT E+R DRV ++VD +  +++ P
Sbjct: 2  KTEWPELVGKAVAAAKKVILQDKPEAQIIVLPVGTIVTMEYRIDRVRLFVDKLDNIAQVP 61
Query: 68 VVG 70
           VG
Sbjct: 62 RVG 64

>pdb|1YPC|I Chain I, Direct Observation Of Better Hydration At The N-Terminus Of An Alpha-Helix With Glycine Rather Than Alanine As N-Cap Length = 64

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 38/63 (60%)
Query: 8  KTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVSKPP 67
          KT WPELVG+  A A   I    P    I+L +GT VT E+R DRV ++VD +  +++ P
Sbjct: 2  KTEWPELVGKSVAAAKKVILQDKPEAQIIVLPVGTIVTMEYRIDRVRLFVDKLDNIAQVP 61
Query: 68 VVG 70
           VG
Sbjct: 62 RVG 64

>pdb|1YPB|I Chain I, Direct Observation Of Better Hydration At The N-Terminus Of An Alpha-Helix With Glycine Rather Than Alanine As N-Cap Length = 64

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 8  KTSWPELVGEIGAVAAATIKLQN-PIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVSKP 66
          KT WPELVG+ G  AA  + LQ+ P    I+L +GT VT E+R DRV ++VD +  +++ 
Sbjct: 2  KTEWPELVGK-GVAAAKKVILQDKPEAQIIVLPVGTIVTMEYRIDRVRLFVDKLDNIAQV 60
Query: 67 PVVG 70
          P VG
Sbjct: 61 PRVG 64

>pdb|1TM3|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 M59k Mutant Length = 64

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 8  KTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVSKPP 67
          KT WPELVG+    A   I    P    I+L +GT VT+E+R DRV ++VD +  +++ P
Sbjct: 2  KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTKEYRIDRVRLFVDRLDNIAQVP 61
Query: 68 VVG 70
           VG
Sbjct: 62 RVG 64

>pdb|1Y4A|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 M59r/e60s Mutant Length = 64

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 8  KTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVSKPP 67
          KT WPELVG+    A   I    P    I+L +GT VTR +R DRV ++VD +  +++ P
Sbjct: 2  KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTRSYRIDRVRLFVDRLDNIAQVP 61
Query: 68 VVG 70
           VG
Sbjct: 62 RVG 64

>pdb|1LW6|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution Length = 64

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 8  KTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVSKPP 67
          KT WPELVG+    A   I    P    I+L +GT VT E+R DRV ++VD +  +++ P
Sbjct: 2  KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTMEYRIDRVRLFVDKLDNIAQVP 61
Query: 68 VVG 70
           VG
Sbjct: 62 RVG 64

>pdb|1TM7|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 M59y Mutant Length = 64

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 8  KTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVSKPP 67
          KT WPELVG+    A   I    P    I+L +GT VT E+R DRV ++VD +  +++ P
Sbjct: 2  KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTYEYRIDRVRLFVDRLDNIAQVP 61
Query: 68 VVG 70
           VG
Sbjct: 62 RVG 64

>pdb|1COA|I Chain I, The Effect Of Cavity Creating Mutations In The Hydrophobic Core Of Chymotrypsin Inhibitor 2 Length = 64

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 37/63 (58%)
Query: 8  KTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVSKPP 67
          KT WPELVG+    A   I    P    I+L +GT VT E+R DRV ++VD +  V++ P
Sbjct: 2  KTEWPELVGKSVEEAKKVILQDKPEAQIIVLPVGTIVTMEYRIDRVRLFVDKLDNVAEVP 61
Query: 68 VVG 70
           VG
Sbjct: 62 RVG 64

>pdb|3CI2|A Chain A, Refinement Of The Three-Dimensional Solution Structure Of Barley Serine Proteinase Inhibitor 2 And Comparison With The Structures In Crystals Length = 66

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 8  KTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVSKPP 67
          KT WPELVG+    A   I    P    I+L +GT VT E+R DRV ++VD +  +++ P
Sbjct: 4  KTEWPELVGKSVEEAKKVILQDKPEAQIIVLPVGTIVTMEYRIDRVRLFVDKLDNIAQVP 63
Query: 68 VVG 70
           VG
Sbjct: 64 RVG 66

>pdb|1TM1|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 Length = 64

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 8  KTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVSKPP 67
          KT WPELVG+    A   I    P    I+L +GT VT E+R DRV ++VD +  +++ P
Sbjct: 2  KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTMEYRIDRVRLFVDRLDNIAQVP 61
Query: 68 VVG 70
           VG
Sbjct: 62 RVG 64

>pdb|1TM5|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 M59a Mutant Length = 64

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 8  KTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVSKPP 67
          KT WPELVG+    A   I    P    I+L +GT VT E+R DRV ++VD +  +++ P
Sbjct: 2  KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTAEYRIDRVRLFVDRLDNIAQVP 61
Query: 68 VVG 70
           VG
Sbjct: 62 RVG 64

>pdb|1HYM|A Chain A, Hydrolyzed Trypsin Inhibitor (Cmti-V, Minimized Average Nmr Structure) Length = 45

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 31/44 (70%)
Query: 3  TFCSGKTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTR 46
          + C GK+SWP LVG  G+VA A I+ QNP V  +IL  GTPVT+
Sbjct: 2  SSCPGKSSWPHLVGVGGSVAKAIIERQNPNVKAVILEEGTPVTK 45

>pdb|1Y3D|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 R67a Mutant Length = 64

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 8  KTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVSKPP 67
          KT WPELVG+    A   I    P    I+L +GT VT E+R DRV ++VD +  +++ P
Sbjct: 2  KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTMEYRIDRVALFVDRLDNIAQVP 61
Query: 68 VVG 70
           VG
Sbjct: 62 RVG 64

>pdb|2CI2|I Chain I, Crystal And Molecular Structure Of The Serine Proteinase Inhibitor Ci-2 From Barley Seeds Length = 83

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 8  KTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVSKPP 67
          KT WPELVG+    A   I    P    I+L +GT VT E+R DRV ++VD +  +++ P
Sbjct: 21 KTEWPELVGKSVEEAKKVILQDKPEAQIIVLPVGTIVTMEYRIDRVRLFVDKLDNIAEVP 80
Query: 68 VVG 70
           VG
Sbjct: 81 RVG 83

>pdb|1TMG|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 M59f Mutant Length = 64

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 8  KTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVSKPP 67
          KT WPELVG+    A   I    P    I+L +GT VT E+R DRV ++VD +  +++ P
Sbjct: 2  KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTFEYRIDRVRLFVDRLDNIAQVP 61
Query: 68 VVG 70
           VG
Sbjct: 62 RVG 64

>pdb|1TM4|I Chain I, Crystal Structure Of The Complex Of Subtilsin Bpn'with Chymotrypsin Inhibitor 2 M59g Mutant Length = 64

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 8  KTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVSKPP 67
          KT WPELVG+    A   I    P    I+L +GT VT E+R DRV ++VD +  +++ P
Sbjct: 2  KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTGEYRIDRVRLFVDRLDNIAQVP 61
Query: 68 VVG 70
           VG
Sbjct: 62 RVG 64

>pdb|1Y3F|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 F69a Mutant Length = 64

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 36/63 (57%)
Query: 8  KTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVSKPP 67
          KT WPELVG+    A   I    P    I+L +GT VT E+R DRV + VD +  +++ P
Sbjct: 2  KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTMEYRIDRVRLAVDRLDNIAQVP 61
Query: 68 VVG 70
           VG
Sbjct: 62 RVG 64

>pdb|1Y1K|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 T58a Mutant Length = 64

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 36/63 (57%)
Query: 8  KTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVSKPP 67
          KT WPELVG+    A   I    P    I+L +GT V  E+R DRV ++VD +  +++ P
Sbjct: 2  KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVAMEYRIDRVRLFVDRLDNIAQVP 61
Query: 68 VVG 70
           VG
Sbjct: 62 RVG 64

>pdb|1Y3B|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 E60s Mutant Length = 64

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 36/63 (57%)
Query: 8  KTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVSKPP 67
          KT WPELVG+    A   I    P    I+L +GT VT  +R DRV ++VD +  +++ P
Sbjct: 2  KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTMSYRIDRVRLFVDRLDNIAQVP 61
Query: 68 VVG 70
           VG
Sbjct: 62 RVG 64

>pdb|1TO1|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 Y61a Mutant Length = 64

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 36/63 (57%)
Query: 8  KTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVSKPP 67
          KT WPELVG+    A   I    P    I+L +GT VT E R DRV ++VD +  +++ P
Sbjct: 2  KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTMEARIDRVRLFVDRLDNIAQVP 61
Query: 68 VVG 70
           VG
Sbjct: 62 RVG 64

>pdb|1Y34|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 E60a Mutant Length = 64

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 36/63 (57%)
Query: 8  KTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVSKPP 67
          KT WPELVG+    A   I    P    I+L +GT VT  +R DRV ++VD +  +++ P
Sbjct: 2  KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTMAYRIDRVRLFVDRLDNIAQVP 61
Query: 68 VVG 70
           VG
Sbjct: 62 RVG 64

>pdb|1Y33|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 T58p Mutant Length = 64

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 36/63 (57%)
Query: 8  KTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVSKPP 67
          KT WPELVG+    A   I    P    I+L +GT V  E+R DRV ++VD +  +++ P
Sbjct: 2  KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVPMEYRIDRVRLFVDRLDNIAQVP 61
Query: 68 VVG 70
           VG
Sbjct: 62 RVG 64

>pdb|1Y48|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 R65a Mutant Length = 64

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 36/63 (57%)
Query: 8  KTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVSKPP 67
          KT WPELVG+    A   I    P    I+L +GT VT E+R D V ++VD +  +++ P
Sbjct: 2  KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTMEYRIDAVRLFVDRLDNIAQVP 61
Query: 68 VVG 70
           VG
Sbjct: 62 RVG 64

>pdb|1Y3C|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 R62a Mutant Length = 64

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 36/63 (57%)
Query: 8  KTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVSKPP 67
          KT WPELVG+    A   I    P    I+L +GT VT E+  DRV ++VD +  +++ P
Sbjct: 2  KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTMEYAIDRVRLFVDRLDNIAQVP 61
Query: 68 VVG 70
           VG
Sbjct: 62 RVG 64

>pdb|1SBN|I Chain I, Refined Crystal Structures Of Subtilisin Novo In Complex With Wild-Type And Two Mutant Eglins. Comparison With Other Serine Proteinase Inhibitor Complexes Length = 70

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 29/55 (52%)
Query: 4  FCSGKTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVD 58
          F S   S+PE+VG+    A     L  P  N   L  G+PVTR+ R +RV V+ +
Sbjct: 3  FGSELKSFPEVVGKTVDQAREYFTLHYPQYNVYFLPEGSPVTRDLRYNRVRVFYN 57

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	70
1mit_A	69	RCMTI-V, trypsin inhibitor V; serine protease inhi	7e-27
3rdy_A	79	BWI-1=protease inhibitor/trypsin inhibitor; serine	2e-26
1vbw_A	68	Trypsin inhibitor BGIT; BGTI, protein binding; HET	2e-26
1dwm_A	70	LUTI, linum usitatissinum trypsin inhibitor; serin	4e-26
2ci2_I	83	Chymotrypsin inhibitor 2; proteinase inhibitor (ch	7e-25
1to2_I	64	Chymotrypsin inhibitor 2; serine protease, hydrola	3e-24
1cse_I	70	Eglin C; complex(serine proteinase-inhibitor); 1.2	4e-23
1hym_A	45	CMTI-V, hydrolyzed cucurbita maxima trypsin inhibi	6e-15
1cq4_A	47	Protein (serine proteinase inhibitor 2); serine pr	1e-06

>1mit_A RCMTI-V, trypsin inhibitor V; serine protease inhibitor (RCMTI-V); NMR {Cucurbita maxima} SCOP: d.40.1.1 PDB: 1tin_A Length = 69

 Score = 91.7 bits (228), Expect = 7e-27
 Identities = 37/69 (53%), Positives = 48/69 (69%)

Query: 2  ATFCSGKTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIG 61
           + C GK+SWP LVG  G+VA A I+ QNP V  +IL  GTPVT++FRC+RV +WV+  G
Sbjct: 1  GSSCPGKSSWPHLVGVGGSVAKAIIERQNPNVKAVILEEGTPVTKDFRCNRVRIWVNKRG 60

Query: 62 RVSKPPVVG 70
           V  PP +G
Sbjct: 61 LVVSPPRIG 69

>3rdy_A BWI-1=protease inhibitor/trypsin inhibitor; serine protease inhibitor, potato inhibitor I, trypsin inhib trypsin, hydrolase inhibitor; 1.84A {Fagopyrum esculentum} PDB: 3rdz_C Length = 79

 Score = 91.0 bits (226), Expect = 2e-26
 Identities = 36/65 (55%), Positives = 43/65 (66%)

Query: 5  CSGKTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVS 64
          CSGK  WPELVGE G+ AA  I+ +N  V  I+L  G+ V R+ RCDRVWV+VD  G V 
Sbjct: 14 CSGKQEWPELVGERGSKAAKIIENENEDVRAIVLPEGSAVPRDLRCDRVWVFVDERGVVV 73

Query: 65 KPPVV 69
            PVV
Sbjct: 74 DTPVV 78

>1vbw_A Trypsin inhibitor BGIT; BGTI, protein binding; HET: TLA; 0.93A {Momordica charantia} Length = 68

 Score = 90.6 bits (225), Expect = 2e-26
 Identities = 34/66 (51%), Positives = 47/66 (71%)

Query: 5  CSGKTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVS 64
          C GK+SWP+LVG  GA A A I+ +NP V  +I+ +G+  T++FRCDRV VWV   G V+
Sbjct: 3  CQGKSSWPQLVGSTGAAAKAVIERENPRVRAVIIKVGSGATKDFRCDRVRVWVTERGIVA 62

Query: 65 KPPVVG 70
          +PP +G
Sbjct: 63 RPPTIG 68

>1dwm_A LUTI, linum usitatissinum trypsin inhibitor; serine proteinase inhibitor; NMR {Linum usitatissimum} SCOP: d.40.1.1 Length = 70

 Score = 89.7 bits (223), Expect = 4e-26
 Identities = 32/68 (47%), Positives = 48/68 (70%)

Query: 2  ATFCSGKTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIG 61
          +  C GK +WPELVG+ G +AAAT++ +N  V+ I+L  G+ +T++FRCDRVWV V+  G
Sbjct: 2  SRRCPGKNAWPELVGKSGNMAAATVERENRNVHAIVLKEGSAMTKDFRCDRVWVIVNDHG 61

Query: 62 RVSKPPVV 69
           V+  P +
Sbjct: 62 VVTSVPHI 69

>2ci2_I Chymotrypsin inhibitor 2; proteinase inhibitor (chymotrypsin); 2.00A {Hordeum vulgare} SCOP: d.40.1.1 PDB: 2sni_I Length = 83

 Score = 86.9 bits (215), Expect = 7e-25
 Identities = 27/66 (40%), Positives = 38/66 (57%)

Query: 5  CSGKTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVS 64
           + KT WPELVG+    A   I    P    I+L +GT VT E+R DRV ++VD +  ++
Sbjct: 18 HNLKTEWPELVGKSVEEAKKVILQDKPEAQIIVLPVGTIVTMEYRIDRVRLFVDKLDNIA 77

Query: 65 KPPVVG 70
          + P VG
Sbjct: 78 EVPRVG 83

>1to2_I Chymotrypsin inhibitor 2; serine protease, hydrolase; HET: CIT 15P; 1.30A {Hordeum vulgare subsp} SCOP: d.40.1.1 PDB: 1tm3_I* 1tm5_I* 1tm1_I* 1tm7_I* 1tm4_I* 1y4a_I* 1y4d_I 1tmg_I* 1lw6_I 1y3b_I* 1y1k_I* 1y34_I* 1y48_I* 1y3d_I* 1y3c_I* 1y33_I* 1to1_I* 1y3f_I* 3ci2_A 1coa_I ... Length = 64

 Score = 84.7 bits (210), Expect = 3e-24
 Identities = 27/63 (42%), Positives = 38/63 (60%)

Query: 8  KTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVSKPP 67
          KT WPELVG+    A   I    P    I+L +GT VT+E+R DRV ++VD +  +++ P
Sbjct: 2  KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTKEYRIDRVRLFVDRLDNIAQVP 61

Query: 68 VVG 70
           VG
Sbjct: 62 RVG 64

>1cse_I Eglin C; complex(serine proteinase-inhibitor); 1.20A {Hirudo medicinalis} SCOP: d.40.1.1 PDB: 2sec_I 2tec_I 1egl_A 1tec_I 1acb_I 3tec_I 1sib_I 1sbn_I 1mee_I 1egp_A 1egp_B Length = 70

 Score = 82.0 bits (203), Expect = 4e-23
 Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 2  ATFCSGKTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDA-I 60
            F S   S+PE+VG+    A     L  P  N   L  G+PVT + R +RV V+ +   
Sbjct: 1  TEFGSELKSFPEVVGKTVDQAREYFTLHYPQYNVYFLPEGSPVTLDLRYNRVRVFYNPGT 60

Query: 61 GRVSKPPVVG 70
            V+  P VG
Sbjct: 61 NVVNHVPHVG 70

>1hym_A CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1 Length = 45

 Score = 61.0 bits (148), Expect = 6e-15
 Identities = 25/42 (59%), Positives = 30/42 (71%)

Query: 5  CSGKTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTR 46
          C GK+SWP LVG  G+VA A I+ QNP V  +IL  GTPVT+
Sbjct: 4  CPGKSSWPHLVGVGGSVAKAIIERQNPNVKAVILEEGTPVTK 45

>1cq4_A Protein (serine proteinase inhibitor 2); serine protease inhibitor, polyglutamine insertion mutant, subtilisin- chymotrypsin inhibitor-2; 1.80A {Hordeum vulgare} SCOP: d.40.1.1 Length = 47

 Score = 40.0 bits (93), Expect = 1e-06
 Identities = 17/42 (40%), Positives = 21/42 (50%)

Query: 8  KTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFR 49
          KT WPELVG+    A   I    P    I+L +GT VT   +
Sbjct: 2  KTEWPELVGKSVEEAKKVILQDKPEAQIIVLPVGTIVTMGQQ 43

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	70
1mit_A	69	RCMTI-V, trypsin inhibitor V; serine protease inhi	100.0
1vbw_A	68	Trypsin inhibitor BGIT; BGTI, protein binding; HET	100.0
1dwm_A	70	LUTI, linum usitatissinum trypsin inhibitor; serin	100.0
3rdy_A	79	BWI-1=protease inhibitor/trypsin inhibitor; serine	100.0
1to2_I	64	Chymotrypsin inhibitor 2; serine protease, hydrola	100.0
2ci2_I	83	Chymotrypsin inhibitor 2; proteinase inhibitor (ch	100.0
1cse_I	70	Eglin C; complex(serine proteinase-inhibitor); 1.2	100.0
1cq4_A	47	Protein (serine proteinase inhibitor 2); serine pr	99.92
1hym_A	45	CMTI-V, hydrolyzed cucurbita maxima trypsin inhibi	99.86
1hym_B	26	CMTI-V, hydrolyzed cucurbita maxima trypsin inhibi	99.39

>1mit_A RCMTI-V, trypsin inhibitor V; serine protease inhibitor (RCMTI-V); NMR {Cucurbita maxima} SCOP: d.40.1.1 PDB: 1tin_A

Probab=100.00  E-value=3.4e-38  Score=182.93  Aligned_cols=68  Identities=54%  Similarity=0.998  Sum_probs=66.9

Q ss_pred             CCCCCCCCcccccccchHHHHHHHHhhCCCCceEEecCCCcccCCccCCeEEEEeCCCCcEEcCCccC
Q 035225            3 TFCSGKTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVSKPPVVG   70 (70)
Q Consensus         3 ~~c~~k~~WpelVG~~~~~A~~~I~~~~p~~~v~vl~pg~~vT~df~~~RV~v~vD~~g~V~~vP~iG   70 (70)
                      +.|++|++||||||+++++|+.+|++|+|++.++||++|+++||||||||||||+|++|+|+++|+||
T Consensus         2 ~~c~~K~sWpELVG~~~~~A~~~I~~d~p~v~v~vl~~g~~vT~Dfr~~RV~V~vD~~g~V~~vP~vG   69 (69)
T 1mit_A            2 SSCPGKSSWPHLVGVGGSVAKAIIERQNPNVKAVILEEGTPVTKDFRCNRVRIWVNKRGLVVSPPRIG   69 (69)
T ss_dssp             CCCSSCSCCCCCTTSHHHHHHHHHHHHCTTSEEEEEETTCCCCSSCCTTEEEEEEETTTEEECCSSCC
T ss_pred             CCCCCcCcCHHHcCccHHHHHHHHHHHCCCCeEEEecCCCccCCCcCCCEEEEEECCCCcEEeCCcCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999998

>1vbw_A Trypsin inhibitor BGIT; BGTI, protein binding; HET: TLA; 0.93A {Momordica charantia}

Probab=100.00  E-value=5.4e-38  Score=181.67  Aligned_cols=68  Identities=50%  Similarity=1.008  Sum_probs=66.5

Q ss_pred             CCCCCCCCcccccccchHHHHHHHHhhCCCCceEEecCCCcccCCccCCeEEEEeCCCCcEEcCCccC
Q 035225            3 TFCSGKTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVSKPPVVG   70 (70)
Q Consensus         3 ~~c~~k~~WpelVG~~~~~A~~~I~~~~p~~~v~vl~pg~~vT~df~~~RV~v~vD~~g~V~~vP~iG   70 (70)
                      +.|++|++||||||+++++|+.+|++|+|++.+++|++|+++||||||||||||+|++|+|+++|+||
T Consensus         1 ~~c~~K~sWpELVG~~~~~A~~~I~~d~p~~~v~vl~~g~~vT~Df~~~RV~v~vD~~g~V~~vP~vG   68 (68)
T 1vbw_A            1 SRCQGKSSWPQLVGSTGAAAKAVIERENPRVRAVIIKVGSGATKDFRCDRVRVWVTERGIVARPPTIG   68 (68)
T ss_dssp             CCSCSCCBCGGGTTSBHHHHHHHHHHHCTTCEEEEEETTSCCCCSCCTTEEEEEECTTSBBCSCCEEC
T ss_pred             CCCCCCCcCHHHCCcCHHHHHHHHHHHCCCCeEEEecCCCccCCCcCCCEEEEEECCCCcEEecCcCC
Confidence            46999999999999999999999999999999999999999999999999999999999999999998

>1dwm_A LUTI, linum usitatissinum trypsin inhibitor; serine proteinase inhibitor; NMR {Linum usitatissimum} SCOP: d.40.1.1

Probab=100.00  E-value=1.7e-37  Score=180.14  Aligned_cols=69  Identities=46%  Similarity=0.875  Sum_probs=67.4

Q ss_pred             CCCCCCCCCcccccccchHHHHHHHHhhCCCCceEEecCCCcccCCccCCeEEEEeCCCCcEEcCCccC
Q 035225            2 ATFCSGKTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVSKPPVVG   70 (70)
Q Consensus         2 ~~~c~~k~~WpelVG~~~~~A~~~I~~~~p~~~v~vl~pg~~vT~df~~~RV~v~vD~~g~V~~vP~iG   70 (70)
                      |+.|++|++||||||+++++|+.+|++|+|++.+++|+||+++|||||+||||||+|++|+|+++|+||
T Consensus         2 ~~~c~~k~sWpelVG~~~~~A~~~i~~e~p~~~vrvl~pg~~vT~Dfr~~RV~v~vD~~g~V~~vP~ig   70 (70)
T 1dwm_A            2 SRRCPGKNAWPELVGKSGNMAAATVERENRNVHAIVLKEGSAMTKDFRCDRVWVIVNDHGVVTSVPHIT   70 (70)
T ss_dssp             CCCCSSCSBCGGGTTSBHHHHHHHHHHHCTTCEEEEEETTCCCCCSCCTTEEEEEECTTSBBCSCCBBC
T ss_pred             CCcCCChhHhHHHcCCcHHHHHHHHHHhCCCceEEEecCCCccCCccCCCeEEEEECCCCeEEeCCcCC
Confidence            567999999999999999999999999999999999999999999999999999999999999999998

>3rdy_A BWI-1=protease inhibitor/trypsin inhibitor; serine protease inhibitor, potato inhibitor I, trypsin inhib trypsin, hydrolase inhibitor; 1.84A {Fagopyrum esculentum} SCOP: d.40.1.0 PDB: 3rdz_C

Probab=100.00  E-value=1.5e-35  Score=176.02  Aligned_cols=67  Identities=54%  Similarity=0.914  Sum_probs=64.7

Q ss_pred             CCCCCCCCcccccccchHHHHHHHHhhCCCCceEEecCCCcccCCccCCeEEEEeCCCCcEEcCCcc
Q 035225            3 TFCSGKTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVSKPPVV   69 (70)
Q Consensus         3 ~~c~~k~~WpelVG~~~~~A~~~I~~~~p~~~v~vl~pg~~vT~df~~~RV~v~vD~~g~V~~vP~i   69 (70)
                      .+|++|+|||||||+++++|+++|++|+|++.++||++|+++||||||||||||+|++|+|+++|+|
T Consensus        12 ~~~~~K~sWPELVG~~~~~A~~~I~~e~P~v~v~Vl~~Gs~VT~Dfr~~RVrV~VD~~g~V~~~P~i   78 (79)
T 3rdy_A           12 RQCSGKQEWPELVGERGSKAAKIIENENEDVRAIVLPEGSAVPRDLRCDRVWVFVDERGVVVDTPVV   78 (79)
T ss_dssp             -CCCSCCBCGGGTTSBHHHHHHHHHHHCTTCEEEEEETTCCCCSCCCSSEEEEEECTTSBBCSCCBB
T ss_pred             hcCCCCCcChHHCCcCHHHHHHHHHHHCCCCceEEeCCCCccCCccCCCEEEEEECCCCeEEeCcee
Confidence            3688999999999999999999999999999999999999999999999999999999999999997

>1to2_I Chymotrypsin inhibitor 2; serine protease, hydrolase; HET: CIT 15P; 1.30A {Hordeum vulgare subsp} SCOP: d.40.1.1 PDB: 1tm3_I* 1tm5_I* 1tm1_I* 1tm7_I* 1tm4_I* 1y4a_I* 1y4d_I 1tmg_I* 1lw6_I 1y3b_I* 1y1k_I* 1y34_I* 1y48_I* 1y3d_I* 1y3c_I* 1y33_I* 1to1_I* 1y3f_I* 3ci2_A 1coa_I ...

Probab=100.00  E-value=1.2e-35  Score=170.07  Aligned_cols=63  Identities=43%  Similarity=0.703  Sum_probs=62.3

Q ss_pred             CCCcccccccchHHHHHHHHhhCCCCceEEecCCCcccCCccCCeEEEEeCCCCcEEcCCccC
Q 035225            8 KTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVSKPPVVG   70 (70)
Q Consensus         8 k~~WpelVG~~~~~A~~~I~~~~p~~~v~vl~pg~~vT~df~~~RV~v~vD~~g~V~~vP~iG   70 (70)
                      |+|||||||+++++|+.+|++|+|++.+++|++|+++||||||||||||+|++|+|+++|+||
T Consensus         2 k~sWPELVG~~~~~A~~~I~~d~p~v~v~vl~~g~~vT~Df~~~RV~v~vD~~g~V~~vP~iG   64 (64)
T 1to2_I            2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTKEYRIDRVRLFVDRLDNIAQVPRVG   64 (64)
T ss_dssp             CCBCGGGTTSBHHHHHHHHHHHCTTCEEEEEETTCEEECBCCTTEEEEEECTTSBBCSCCEEC
T ss_pred             CcCCHhhCCCcHHHHHHHHHHHCCCCeEEEecCCCccCCCcCCCEEEEEECCCCeEEecCcCC
Confidence            899999999999999999999999999999999999999999999999999999999999998

>2ci2_I Chymotrypsin inhibitor 2; proteinase inhibitor (chymotrypsin); 2.00A {Hordeum vulgare} SCOP: d.40.1.1 PDB: 2sni_I

Probab=100.00  E-value=4.9e-35  Score=174.93  Aligned_cols=66  Identities=41%  Similarity=0.615  Sum_probs=63.8

Q ss_pred             CCCCCCcccccccchHHHHHHHHhhCCCCceEEecCCCcccCCccCCeEEEEeCCCCcEEcCCccC
Q 035225            5 CSGKTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVSKPPVVG   70 (70)
Q Consensus         5 c~~k~~WpelVG~~~~~A~~~I~~~~p~~~v~vl~pg~~vT~df~~~RV~v~vD~~g~V~~vP~iG   70 (70)
                      |.+|++||||||+++++|+.+|++|+|++.++||++|+++||||||||||||+|++|+|+++|+||
T Consensus        18 ~~~K~sWPELVG~~~~~A~~~I~~d~p~v~vrVl~~G~~VT~Dfr~dRV~V~vD~~g~V~~vP~vG   83 (83)
T 2ci2_I           18 HNLKTEWPELVGKSVEEAKKVILQDKPEAQIIVLPVGTIVTMEYRIDRVRLFVDKLDNIAEVPRVG   83 (83)
T ss_dssp             -CCCCBCGGGTTSBHHHHHHHHHHHCTTCEEEEEETTCCCCSCCCTTEEEEEECTTSBBCSCCEEC
T ss_pred             CCChhhhHHHcCCcHHHHHHHHHhhCCCCeEEEecCCCccCCCcCCCEEEEEECCCCcEEeCCcCC
Confidence            458999999999999999999999999999999999999999999999999999999999999998

>1cse_I Eglin C; complex(serine proteinase-inhibitor); 1.20A {Hirudo medicinalis} SCOP: d.40.1.1 PDB: 2sec_I 2tec_I 1egl_A 1tec_I 1acb_I 3tec_I 1sib_I 1sbn_I 1mee_I 1egp_A 1egp_B

Probab=100.00  E-value=5.1e-35  Score=170.04  Aligned_cols=65  Identities=35%  Similarity=0.495  Sum_probs=61.3

Q ss_pred             CCCCCcccccccchHHHHHHHHhhCCCCceEEecCCCcccCCccCCeEEEEeC-CCCcEEcCCccC
Q 035225            6 SGKTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVD-AIGRVSKPPVVG   70 (70)
Q Consensus         6 ~~k~~WpelVG~~~~~A~~~I~~~~p~~~v~vl~pg~~vT~df~~~RV~v~vD-~~g~V~~vP~iG   70 (70)
                      ++|++||||||+++++|+.+|++|+|++.+++|++|+++||||||||||||+| ++|+|+++|+||
T Consensus         5 ~~k~sWPELVG~~~~~A~~~I~~d~p~~~v~vl~~g~~vT~Df~~~RV~V~vD~~~g~V~~vP~iG   70 (70)
T 1cse_I            5 SELKSFPEVVGKTVDQAREYFTLHYPQYNVYFLPEGSPVTLDLRYNRVRVFYNPGTNVVNHVPHVG   70 (70)
T ss_dssp             ---CBCGGGTTSBHHHHHHHHHHHCTTSEEEEEETTCCEECCCCTTEEEEEEETTTTEECSCCEEC
T ss_pred             CCCCcCHHHcCccHHHHHHHHHHHCCCCeEEEecCCCccCCccCCCeEEEEEcCCCCEEEeCCcCC
Confidence            36999999999999999999999999999999999999999999999999999 999999999998

>1cq4_A Protein (serine proteinase inhibitor 2); serine protease inhibitor, polyglutamine insertion mutant, subtilisin- chymotrypsin inhibitor-2; 1.80A {Hordeum vulgare} SCOP: d.40.1.1

Probab=99.92  E-value=3.6e-26  Score=124.02  Aligned_cols=46  Identities=37%  Similarity=0.469  Sum_probs=36.5

Q ss_pred             CCCcccccccchHHHHHHHHhhCCCCceEEecCCCcccCCccCCeE
Q 035225            8 KTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRV   53 (70)
Q Consensus         8 k~~WpelVG~~~~~A~~~I~~~~p~~~v~vl~pg~~vT~df~~~RV   53 (70)
                      |+|||||||+++++|+.+|++|||++.++||++|+++||||||||+
T Consensus         2 K~sWPELVG~~~~~A~~~I~~e~p~v~v~vl~~gs~vT~Df~~~R~   47 (47)
T 1cq4_A            2 KTEWPELVGKSVEEAKKVILQDKPEAQIIVLPVGTIVTMGQQQQGM   47 (47)
T ss_dssp             CCBCGGGTTSBHHHHHHHHHHHCTTCEEEEEETTCCC---------
T ss_pred             CcCChhhcCccHHHHHHHHHHHCCCCEEEEeCCCCCcCcccCCCCC
Confidence            8999999999999999999999999999999999999999999996

>1hym_A CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1

Probab=99.86  E-value=3.6e-22  Score=107.47  Aligned_cols=44  Identities=57%  Similarity=0.932  Sum_probs=42.1

Q ss_pred             CCCCCCCCCcccccccchHHHHHHHHhhCCCCceEEecCCCcccC
Q 035225            2 ATFCSGKTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTR   46 (70)
Q Consensus         2 ~~~c~~k~~WpelVG~~~~~A~~~I~~~~p~~~v~vl~pg~~vT~   46 (70)
                      |+ |++|+|||||||+++++|+++|++|||++.+.||++|+++|+
T Consensus         2 s~-c~~K~sWPELVG~~~~~A~~~I~~e~P~v~v~vl~~gs~vT~   45 (45)
T 1hym_A            2 SS-CPGKSSWPHLVGVGGSVAKAIIERQNPNVKAVILEEGTPVTK   45 (45)
T ss_dssp             CC-CCSCSBCCCCTTSCHHHHHHHHHHHCTTCEEEEEECCSCCCC
T ss_pred             CC-CCCCCcChhhcCCcHHHHHHHHHHHCCCCeEEEecCCCcCCC
Confidence            44 999999999999999999999999999999999999999996

>1hym_B CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1

Probab=99.39  E-value=1.9e-13  Score=65.75  Aligned_cols=24  Identities=50%  Similarity=1.172  Sum_probs=23.5

Q ss_pred             CccCCeEEEEeCCCCcEEcCCccC
Q 035225           47 EFRCDRVWVWVDAIGRVSKPPVVG   70 (70)
Q Consensus        47 df~~~RV~v~vD~~g~V~~vP~iG   70 (70)
                      ||||+||+||+|++|+|+++|+||
T Consensus         1 Df~~~RVrvfvd~~g~V~~~P~iG   24 (26)
T 1hym_B            1 DFRCNRVRIWVNKRGLVVSPPRIG   24 (26)
T ss_dssp             CCCTTEEEEEEETTTEEECCSBCC
T ss_pred             CCCCCEEEEEECCCCcEEECCccc
Confidence            899999999999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	70
g1hym.1	68	d.40.1.1 (A:,B:) Trypsin inhibitor V {Pumpkin (Cuc	3e-27
d1dwma_	69	d.40.1.1 (A:) Trypsin inhibitor LUTI {Flax (Linum	4e-26
d1to2i_	64	d.40.1.1 (I:) Chymotrypsin inhibitor CI-2 {Barley	1e-24
d1csei_	63	d.40.1.1 (I:) Eglin C {Leech (Hirudo medicinalis)	1e-21

>d1dwma_ d.40.1.1 (A:) Trypsin inhibitor LUTI {Flax (Linum usitatissimum) [TaxId: 4006]} Length = 69

class: Alpha and beta proteins (a+b)
fold: CI-2 family of serine protease inhibitors
superfamily: CI-2 family of serine protease inhibitors
family: CI-2 family of serine protease inhibitors
domain: Trypsin inhibitor LUTI
species: Flax (Linum usitatissimum) [TaxId: 4006]

 Score = 88.6 bits (220), Expect = 4e-26
 Identities = 32/68 (47%), Positives = 48/68 (70%)

Query: 2  ATFCSGKTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIG 61
          +  C GK +WPELVG+ G +AAAT++ +N  V+ I+L  G+ +T++FRCDRVWV V+  G
Sbjct: 1  SRRCPGKNAWPELVGKSGNMAAATVERENRNVHAIVLKEGSAMTKDFRCDRVWVIVNDHG 60

Query: 62 RVSKPPVV 69
           V+  P +
Sbjct: 61 VVTSVPHI 68

>d1to2i_ d.40.1.1 (I:) Chymotrypsin inhibitor CI-2 {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 64

class: Alpha and beta proteins (a+b)
fold: CI-2 family of serine protease inhibitors
superfamily: CI-2 family of serine protease inhibitors
family: CI-2 family of serine protease inhibitors
domain: Chymotrypsin inhibitor CI-2
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score = 84.7 bits (210), Expect = 1e-24
 Identities = 27/63 (42%), Positives = 38/63 (60%)

Query: 8  KTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVSKPP 67
          KT WPELVG+    A   I    P    I+L +GT VT+E+R DRV ++VD +  +++ P
Sbjct: 2  KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTKEYRIDRVRLFVDRLDNIAQVP 61

Query: 68 VVG 70
           VG
Sbjct: 62 RVG 64

>d1csei_ d.40.1.1 (I:) Eglin C {Leech (Hirudo medicinalis) [TaxId: 6421]} Length = 63

class: Alpha and beta proteins (a+b)
fold: CI-2 family of serine protease inhibitors
superfamily: CI-2 family of serine protease inhibitors
family: CI-2 family of serine protease inhibitors
domain: Eglin C
species: Leech (Hirudo medicinalis) [TaxId: 6421]

 Score = 77.4 bits (191), Expect = 1e-21
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 10 SWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAI-GRVSKPPV 68
          S+PE+VG+    A     L  P  N   L  G+PVT + R +RV V+ +     V+  P 
Sbjct: 2  SFPEVVGKTVDQAREYFTLHYPQYNVYFLPEGSPVTLDLRYNRVRVFYNPGTNVVNHVPH 61

Query: 69 VG 70
          VG
Sbjct: 62 VG 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	70
g1hym.1	68	Trypsin inhibitor V {Pumpkin (Cucurbita maxima) [T	100.0
d1dwma_	69	Trypsin inhibitor LUTI {Flax (Linum usitatissimum)	100.0
d1to2i_	64	Chymotrypsin inhibitor CI-2 {Barley (Hordeum vulga	100.0
d1csei_	63	Eglin C {Leech (Hirudo medicinalis) [TaxId: 6421]}	100.0
d1pyya1	61	Penicillin-binding protein 2x (pbp-2x), c-terminal	93.49
d1pyya2	58	Penicillin-binding protein 2x (pbp-2x), c-terminal	84.41

>d1dwma_ d.40.1.1 (A:) Trypsin inhibitor LUTI {Flax (Linum usitatissimum) [TaxId: 4006]}

class: Alpha and beta proteins (a+b)
fold: CI-2 family of serine protease inhibitors
superfamily: CI-2 family of serine protease inhibitors
family: CI-2 family of serine protease inhibitors
domain: Trypsin inhibitor LUTI
species: Flax (Linum usitatissimum) [TaxId: 4006]

Probab=100.00  E-value=2.9e-38  Score=182.21  Aligned_cols=68  Identities=47%  Similarity=0.894  Sum_probs=66.7

Q ss_pred             CCCCCCCCCcccccccchHHHHHHHHhhCCCCceEEecCCCcccCCccCCeEEEEeCCCCcEEcCCcc
Q 035225            2 ATFCSGKTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVSKPPVV   69 (70)
Q Consensus         2 ~~~c~~k~~WpelVG~~~~~A~~~I~~~~p~~~v~vl~pg~~vT~df~~~RV~v~vD~~g~V~~vP~i   69 (70)
                      |+.||||+|||||||+++++|+++|++|||++++.++++|+++|+|||||||+||+|++|+|+++|+|
T Consensus         1 ~~~C~gK~sWPELVG~~~~~A~~~I~~enp~v~v~v~~~gs~vt~Dfr~~RVrv~Vd~~g~V~~~P~I   68 (69)
T d1dwma_           1 SRRCPGKNAWPELVGKSGNMAAATVERENRNVHAIVLKEGSAMTKDFRCDRVWVIVNDHGVVTSVPHI   68 (69)
T ss_dssp             CCCCSSCSBCGGGTTSBHHHHHHHHHHHCTTCEEEEEETTCCCCCSCCTTEEEEEECTTSBBCSCCBB
T ss_pred             CCcCCCCCcCHHHCCCCHHHHHHHHHHHCCCceEEEeeCCCcccCcccCCEEEEEECCCCcEEecccc
Confidence            57999999999999999999999999999999999999999999999999999999999999999998

>d1to2i_ d.40.1.1 (I:) Chymotrypsin inhibitor CI-2 {Barley (Hordeum vulgare) [TaxId: 4513]}

class: Alpha and beta proteins (a+b)
fold: CI-2 family of serine protease inhibitors
superfamily: CI-2 family of serine protease inhibitors
family: CI-2 family of serine protease inhibitors
domain: Chymotrypsin inhibitor CI-2
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=100.00  E-value=1.5e-35  Score=168.76  Aligned_cols=63  Identities=43%  Similarity=0.703  Sum_probs=62.3

Q ss_pred             CCCcccccccchHHHHHHHHhhCCCCceEEecCCCcccCCccCCeEEEEeCCCCcEEcCCccC
Q 035225            8 KTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDAIGRVSKPPVVG   70 (70)
Q Consensus         8 k~~WpelVG~~~~~A~~~I~~~~p~~~v~vl~pg~~vT~df~~~RV~v~vD~~g~V~~vP~iG   70 (70)
                      |+|||||||+++++|+++|++|+|++++.+++.|+++|+|||||||+||+|++|+|+++|+||
T Consensus         2 K~sWPELVG~~~~~Ak~~I~~e~p~v~v~v~p~gs~vt~Dfr~~RVrv~Vd~~g~V~~~P~iG   64 (64)
T d1to2i_           2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTKEYRIDRVRLFVDRLDNIAQVPRVG   64 (64)
T ss_dssp             CCBCGGGTTSBHHHHHHHHHHHCTTCEEEEEETTCEEECBCCTTEEEEEECTTSBBCSCCEEC
T ss_pred             CccChhhcCCCHHHHHHHHHHhCCCceEEEecCCCcccCcccCCEEEEEECCCCeEEeCCCCC
Confidence            899999999999999999999999999999999999999999999999999999999999998

>d1csei_ d.40.1.1 (I:) Eglin C {Leech (Hirudo medicinalis) [TaxId: 6421]}

class: Alpha and beta proteins (a+b)
fold: CI-2 family of serine protease inhibitors
superfamily: CI-2 family of serine protease inhibitors
family: CI-2 family of serine protease inhibitors
domain: Eglin C
species: Leech (Hirudo medicinalis) [TaxId: 6421]

Probab=100.00  E-value=1.1e-33  Score=160.60  Aligned_cols=62  Identities=35%  Similarity=0.521  Sum_probs=60.4

Q ss_pred             CCcccccccchHHHHHHHHhhCCCCceEEecCCCcccCCccCCeEEEEeCC-CCcEEcCCccC
Q 035225            9 TSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTREFRCDRVWVWVDA-IGRVSKPPVVG   70 (70)
Q Consensus         9 ~~WpelVG~~~~~A~~~I~~~~p~~~v~vl~pg~~vT~df~~~RV~v~vD~-~g~V~~vP~iG   70 (70)
                      +|||||||+++++|+++|++|+|++++.++++|+++|+|||||||+||+|+ +|+|+++|+||
T Consensus         1 ~SWPELVG~~~~~A~~~I~~e~p~v~v~v~p~gs~vt~Dfr~~RVrv~Vd~~~g~V~~~P~iG   63 (63)
T d1csei_           1 KSFPEVVGKTVDQAREYFTLHYPQYNVYFLPEGSPVTLDLRYNRVRVFYNPGTNVVNHVPHVG   63 (63)
T ss_dssp             CBCGGGTTSBHHHHHHHHHHHCTTSEEEEEETTCCEECCCCTTEEEEEEETTTTEECSCCEEC
T ss_pred             CCChhhcCCCHHHHHHHHHHHCCCceEEEEeCCCcccCcccCCEEEEEEECCCCEEEeCCCCC
Confidence            589999999999999999999999999999999999999999999999997 89999999998

>d1pyya1 d.11.1.1 (A:632-692) Penicillin-binding protein 2x (pbp-2x), c-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Penicillin-binding protein 2x (pbp-2x), c-terminal domain
superfamily: Penicillin-binding protein 2x (pbp-2x), c-terminal domain
family: Penicillin-binding protein 2x (pbp-2x), c-terminal domain
domain: Penicillin-binding protein 2x (pbp-2x), c-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=93.49  E-value=0.094  Score=27.19  Aligned_cols=49  Identities=18%  Similarity=0.264  Sum_probs=33.7

Q ss_pred             CCCcccccccchHHHHHHHHhhCCCCceEEecCCCcccCC--------ccCCeEEEEeC
Q 035225            8 KTSWPELVGEIGAVAAATIKLQNPIVNPIILMLGTPVTRE--------FRCDRVWVWVD   58 (70)
Q Consensus         8 k~~WpelVG~~~~~A~~~I~~~~p~~~v~vl~pg~~vT~d--------f~~~RV~v~vD   58 (70)
                      .-.=|+|+|++..+|...+++.  ++.++|+..|..|+.-        -.-++|.|+.|
T Consensus         4 ~~~vP~v~g~s~~~A~~~L~~~--gl~~~v~G~G~~V~~QsP~~G~~v~~g~~V~L~T~   60 (61)
T d1pyya1           4 PYPMPSVKDISPGDLAEELRRN--LVQPIVVGTGTKIKNSSAEEGKNLAPNQQVLILSD   60 (61)
T ss_dssp             CCBCCCCSSCCHHHHHHHHHHT--TCEEEEESSCSSEEEESSCTTCBCCTTCEEEEEES
T ss_pred             cccCCcccCCCHHHHHHHHHHC--CCeEEEecCCCEEEEEccCCCcccCCCCEEEEEeC
Confidence            3456899999999999888876  5566677666544321        23457777665

>d1pyya2 d.11.1.1 (A:693-750) Penicillin-binding protein 2x (pbp-2x), c-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Penicillin-binding protein 2x (pbp-2x), c-terminal domain
superfamily: Penicillin-binding protein 2x (pbp-2x), c-terminal domain
family: Penicillin-binding protein 2x (pbp-2x), c-terminal domain
domain: Penicillin-binding protein 2x (pbp-2x), c-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=84.41  E-value=0.58  Score=23.56  Aligned_cols=30  Identities=17%  Similarity=0.098  Sum_probs=21.5

Q ss_pred             CcccccccchHHHHHHHHhhCCCCceEEecCC
Q 035225           10 SWPELVGEIGAVAAATIKLQNPIVNPIILMLG   41 (70)
Q Consensus        10 ~WpelVG~~~~~A~~~I~~~~p~~~v~vl~pg   41 (70)
                      +=|+|+|++..+|...++..  ++.+.+...|
T Consensus         3 evPdl~G~s~~~A~~~l~~~--gl~v~~~g~g   32 (58)
T d1pyya2           3 EVPDMYGWTKETAETLAKWL--NIELEFQGSG   32 (58)
T ss_dssp             BCCCCTTCBHHHHHHHHHHT--TCEEEEESCC
T ss_pred             cCCCcCCCcHHHHHHHHHHc--CCEEEEecCc
Confidence            46999999999999888764  3444444433