Citrus Sinensis ID: 035229

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70
Protein Sequence
MDVYRCKGVLSVKHSDQLHTLQAVREIYEIVPARKWRTEENQMNKIVFIGHHLNQDILQDSLRTCTLATT
Secondary Structure (PSIPRED)
ccEEEEEEEEEEccccEEEEEEccccEEEcccccccccccccccEEEEEEccccHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEEEcccccEEEEEHHHHHHccccccccccccccccEEEEEcccccHHHHHHHHHHHEEccc
Coil and Loop (DISEMBL)
mdvyrckgvlsvkhsdqLHTLQAVREIYEIVparkwrteenqMNKIVFIGHHLNQDILQDSLRTCTLATT
Flexible Loop (DISEMBL)
mdvyrckgvlsvkhsdqlhtlqAVREIYEIVPARKWRTEENQMNKIVFIGHhlnqdilqdslrtctlatt
Low Complexity Region (SEG)
MDVYRCKGVLSVKHSDQLHTLQAVREIYEIVPARKWRTEENQMNKIVFIGHHLNQDILQDSLRTCTLATT
Disordered region (IsUnstruct)
***YRCKGVLSVKHSDQLHTLQAVREIYEIVPARKWRTEENQMNKIVFIGHHLNQDILQDSLRTCT****
Disordered Region (DISOPRED)
MDVYRCKGVLSVKHSDQLHTLQAVREIYEIVPA******ENQMNKIVFIGHHLNQDILQDSLRTCTLA**
Disordered Region (DISEMBL)
MDVYRCKGVLSVKHSDQLHTLQAVREIYEIVPARKWRTEENQMNKIVFIGHHLNQDILQDSLRTCTLATT
Disordered Region (DISPRO)
MDVYRCKGVLSVKHSDQLHTLQAVREIYEIVPARKWRTEENQMNKIVFIGHHLNQDILQDSLRTCTLAT*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDVYRCKGVLSVKHSDQLHTLQAVREIYEIVPARKWRTEENQMNKIVFIGHHLNQDILQDSLRTCTLATT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	70	2.2.26 [Sep-21-2011]
Q99MB4	394	COBW domain-containing pr	yes	no	0.985	0.175	0.357	4e-06
Q5RIA9	395	COBW domain-containing pr	yes	no	0.828	0.146	0.360	0.0001
Q5JTY5	395	COBW domain-containing pr	yes	no	0.828	0.146	0.360	0.0001
A6NM15	247	Putative COBW domain-cont	no	no	0.828	0.234	0.360	0.0001
Q8VEH6	393	COBW domain-containing pr	yes	no	0.842	0.150	0.333	0.0002
Q9BRT8	395	COBW domain-containing pr	yes	no	0.828	0.146	0.344	0.0002
Q8IUF1	395	COBW domain-containing pr	yes	no	0.828	0.146	0.344	0.0002

>sp|Q99MB4|CBWD1_RAT COBW domain-containing protein 1 OS=Rattus norvegicus GN=Cbwd1 PE=2 SV=2

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 1   MDVYRCKGVLSVKHSDQLHTLQAVREIYEIVPAR-KWRTEENQMNKIVFIGHHLNQDILQ 59
           M+V R KG++S+K   Q   +Q + E+YE+  +R  W+ +  +  ++VFIG +L++DILQ
Sbjct: 309 MEVIRLKGLVSIKDKPQQMIVQGIHELYELEESRVNWKDDAERACQLVFIGKNLDKDILQ 368

Query: 60  DSLRTCTLAT 69
               T    T
Sbjct: 369 QLFITAVAET 378

Rattus norvegicus (taxid: 10116)

>sp|Q5RIA9|CBWD5_HUMAN COBW domain-containing protein 5 OS=Homo sapiens GN=CBWD5 PE=2 SV=1

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 39/61 (63%), Gaps = 3/61 (4%)

Query: 1   MDVYRCKGVLSVKHSDQLHTLQAVREIYEI--VPARKWRTEENQMNKIVFIGHHLNQDIL 58
           M+V R KG++S+K   Q   +Q V E+Y++   P   W+ +  + N++V IG +L++DIL
Sbjct: 311 MEVIRLKGLVSIKDKSQQVIVQGVHELYDLEETPV-SWKDDTERTNRLVLIGRNLDKDIL 369

Query: 59  Q 59
           +
Sbjct: 370 K 370

Homo sapiens (taxid: 9606)

>sp|Q5JTY5|CBWD3_HUMAN COBW domain-containing protein 3 OS=Homo sapiens GN=CBWD3 PE=2 SV=1

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 39/61 (63%), Gaps = 3/61 (4%)

Query: 1   MDVYRCKGVLSVKHSDQLHTLQAVREIYEI--VPARKWRTEENQMNKIVFIGHHLNQDIL 58
           M+V R KG++S+K   Q   +Q V E+Y++   P   W+ +  + N++V IG +L++DIL
Sbjct: 311 MEVIRLKGLVSIKDKSQQVIVQGVHELYDLEETPV-SWKDDTERTNRLVLIGRNLDKDIL 369

Query: 59  Q 59
           +
Sbjct: 370 K 370

Homo sapiens (taxid: 9606)

>sp|A6NM15|CBWD7_HUMAN Putative COBW domain-containing protein 7 OS=Homo sapiens GN=CBWD7 PE=5 SV=3

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 39/61 (63%), Gaps = 3/61 (4%)

Query: 1   MDVYRCKGVLSVKHSDQLHTLQAVREIYEI--VPARKWRTEENQMNKIVFIGHHLNQDIL 58
           M+V R KG++S+K   Q   +Q V E+Y++   P   W+ +  + N++V IG +L++DIL
Sbjct: 163 MEVIRLKGLVSIKDKSQQVIVQGVHELYDLEETPV-SWKDDTERTNRLVLIGRNLDKDIL 221

Query: 59  Q 59
           +
Sbjct: 222 K 222

Homo sapiens (taxid: 9606)

>sp|Q8VEH6|CBWD1_MOUSE COBW domain-containing protein 1 OS=Mus musculus GN=Cbwd1 PE=2 SV=1

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 39/60 (65%), Gaps = 1/60 (1%)

Query: 1   MDVYRCKGVLSVKHSDQLHTLQAVREIYEIVPAR-KWRTEENQMNKIVFIGHHLNQDILQ 59
           M+V R KG++S+K   Q   +Q + E+Y++  +   W+ +  +  ++VFIG +L++D+LQ
Sbjct: 308 MEVIRLKGLVSIKDKPQQMIVQGIHELYDLEESLVNWKDDAERACQLVFIGRNLDKDVLQ 367

Mus musculus (taxid: 10090)

>sp|Q9BRT8|CBWD1_HUMAN COBW domain-containing protein 1 OS=Homo sapiens GN=CBWD1 PE=1 SV=1

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 39/61 (63%), Gaps = 3/61 (4%)

Query: 1   MDVYRCKGVLSVKHSDQLHTLQAVREIYEI--VPARKWRTEENQMNKIVFIGHHLNQDIL 58
           M+V R KG++S+K   Q   +Q V E+Y++   P   W+ +  + N++V +G +L++DIL
Sbjct: 311 MEVIRLKGLVSIKDKSQQVIVQGVHELYDLEETPV-SWKDDTERTNRLVLLGRNLDKDIL 369

Query: 59  Q 59
           +
Sbjct: 370 K 370

Homo sapiens (taxid: 9606)

>sp|Q8IUF1|CBWD2_HUMAN COBW domain-containing protein 2 OS=Homo sapiens GN=CBWD2 PE=1 SV=1

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 39/61 (63%), Gaps = 3/61 (4%)

Query: 1   MDVYRCKGVLSVKHSDQLHTLQAVREIYEI--VPARKWRTEENQMNKIVFIGHHLNQDIL 58
           M+V R KG++S+K   Q   +Q V E+Y++   P   W+ +  + N++V +G +L++DIL
Sbjct: 311 MEVIRLKGLVSIKDKSQQVIVQGVHELYDLEETPV-SWKDDTERTNRLVLLGRNLDKDIL 369

Query: 59  Q 59
           +
Sbjct: 370 K 370

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	70
225423525	368	PREDICTED: COBW domain-containing protei	0.928	0.176	0.8	3e-24
297738062	621	unnamed protein product [Vitis vinifera]	0.928	0.104	0.8	8e-24
388495078	390	unknown [Lotus japonicus]	0.928	0.166	0.784	9e-24
224101437	375	predicted protein [Populus trichocarpa]	0.985	0.184	0.710	1e-23
297845544	374	hypothetical protein ARALYDRAFT_472757 [	0.928	0.173	0.707	1e-21
449452867	374	PREDICTED: COBW domain-containing protei	0.942	0.176	0.696	2e-21
449523868	367	PREDICTED: COBW domain-containing protei	0.942	0.179	0.696	2e-21
356494965	365	PREDICTED: COBW domain-containing protei	0.928	0.178	0.720	3e-21
145336129	374	Cobalamin biosynthesis CobW-like protein	0.928	0.173	0.692	4e-21
62321492	364	hypothetical protein [Arabidopsis thalia	0.928	0.178	0.692	5e-21

>gi|225423525|ref|XP_002274691.1| PREDICTED: COBW domain-containing protein 1-like [Vitis vinifera]

 Score =  115 bits (288), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 52/65 (80%), Positives = 56/65 (86%)

Query: 1   MDVYRCKGVLSVKHSDQLHTLQAVREIYEIVPARKWRTEENQMNKIVFIGHHLNQDILQD 60
           MDVYRCKGVL V  SDQLHTLQAVREIYEIVP RKW+ EENQMNKIVFIGH+LN+D L +
Sbjct: 299 MDVYRCKGVLRVLDSDQLHTLQAVREIYEIVPTRKWKNEENQMNKIVFIGHNLNEDALTN 358

Query: 61  SLRTC 65
           S R C
Sbjct: 359 SFRAC 363

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738062|emb|CBI27263.3| unnamed protein product [Vitis vinifera]

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 52/65 (80%), Positives = 56/65 (86%)

Query: 1   MDVYRCKGVLSVKHSDQLHTLQAVREIYEIVPARKWRTEENQMNKIVFIGHHLNQDILQD 60
           MDVYRCKGVL V  SDQLHTLQAVREIYEIVP RKW+ EENQMNKIVFIGH+LN+D L +
Sbjct: 299 MDVYRCKGVLRVLDSDQLHTLQAVREIYEIVPTRKWKNEENQMNKIVFIGHNLNEDALTN 358

Query: 61  SLRTC 65
           S R C
Sbjct: 359 SFRAC 363

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495078|gb|AFK35605.1| unknown [Lotus japonicus]

 Score =  114 bits (284), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 51/65 (78%), Positives = 58/65 (89%)

Query: 1   MDVYRCKGVLSVKHSDQLHTLQAVREIYEIVPARKWRTEENQMNKIVFIGHHLNQDILQD 60
           MDVYRCKGVLSV++SDQLHTLQAVRE+YEIVPARKW  EEN+MNKIVFIGH+L +D+L  
Sbjct: 323 MDVYRCKGVLSVQNSDQLHTLQAVRELYEIVPARKWEREENRMNKIVFIGHNLKEDVLIH 382

Query: 61  SLRTC 65
           S R C
Sbjct: 383 SFRAC 387

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101437|ref|XP_002312279.1| predicted protein [Populus trichocarpa] gi|222852099|gb|EEE89646.1| predicted protein [Populus trichocarpa]

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 49/69 (71%), Positives = 62/69 (89%)

Query: 1   MDVYRCKGVLSVKHSDQLHTLQAVREIYEIVPARKWRTEENQMNKIVFIGHHLNQDILQD 60
           MDVYRCKGVL V++SD+LHTLQAVRE+Y+IVPARKWR++ENQ+NKIVFIGH+L +D+L +
Sbjct: 307 MDVYRCKGVLYVRNSDELHTLQAVRELYDIVPARKWRSDENQINKIVFIGHNLKEDVLIN 366

Query: 61  SLRTCTLAT 69
           S R C + T
Sbjct: 367 SFRDCIVTT 375

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845544|ref|XP_002890653.1| hypothetical protein ARALYDRAFT_472757 [Arabidopsis lyrata subsp. lyrata] gi|297336495|gb|EFH66912.1| hypothetical protein ARALYDRAFT_472757 [Arabidopsis lyrata subsp. lyrata]

 Score =  106 bits (265), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 46/65 (70%), Positives = 56/65 (86%)

Query: 1   MDVYRCKGVLSVKHSDQLHTLQAVREIYEIVPARKWRTEENQMNKIVFIGHHLNQDILQD 60
           MDVYRCK VLS+++SDQ+H LQAVREIYEIVPARKW  EEN+ NKIVFIGH L++++L+ 
Sbjct: 308 MDVYRCKAVLSIQNSDQMHILQAVREIYEIVPARKWSEEENRTNKIVFIGHKLDEEVLRS 367

Query: 61  SLRTC 65
            LR C
Sbjct: 368 GLRDC 372

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452867|ref|XP_004144180.1| PREDICTED: COBW domain-containing protein 1-like [Cucumis sativus]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/66 (69%), Positives = 55/66 (83%)

Query: 1   MDVYRCKGVLSVKHSDQLHTLQAVREIYEIVPARKWRTEENQMNKIVFIGHHLNQDILQD 60
           MDVYRCKGVLS+K+SDQLHTLQAVRE+YEIVP R+W   E+Q NKIVFIG +LN+D+L  
Sbjct: 306 MDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTRQWNNGESQTNKIVFIGRNLNEDVLSK 365

Query: 61  SLRTCT 66
           + R C 
Sbjct: 366 TFRECA 371

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449523868|ref|XP_004168945.1| PREDICTED: COBW domain-containing protein 1-like [Cucumis sativus]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/66 (69%), Positives = 55/66 (83%)

Query: 1   MDVYRCKGVLSVKHSDQLHTLQAVREIYEIVPARKWRTEENQMNKIVFIGHHLNQDILQD 60
           MDVYRCKGVLS+K+SDQLHTLQAVRE+YEIVP R+W   E+Q NKIVFIG +LN+D+L  
Sbjct: 299 MDVYRCKGVLSIKNSDQLHTLQAVRELYEIVPTRQWNNGESQTNKIVFIGRNLNEDVLSK 358

Query: 61  SLRTCT 66
           + R C 
Sbjct: 359 TFRECA 364

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356494965|ref|XP_003516351.1| PREDICTED: COBW domain-containing protein 1-like [Glycine max]

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/68 (72%), Positives = 59/68 (86%), Gaps = 3/68 (4%)

Query: 1   MDVYRCKGVLSVKHSDQLHTLQAVREIYEIVPARKWRTEENQMNKIVFIGHHLNQDILQD 60
           MDVYRCKGVLSV++SDQLHTLQAV+E+YEIVP+RKW  EE ++NKIVFIGH+L +DIL +
Sbjct: 298 MDVYRCKGVLSVQNSDQLHTLQAVKELYEIVPSRKWEKEEKRINKIVFIGHNLKEDILIN 357

Query: 61  SLR---TC 65
           S R   TC
Sbjct: 358 SFRDRATC 365

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145336129|ref|NP_173974.3| Cobalamin biosynthesis CobW-like protein [Arabidopsis thaliana] gi|63147374|gb|AAY34160.1| At1g26520 [Arabidopsis thaliana] gi|332192579|gb|AEE30700.1| Cobalamin biosynthesis CobW-like protein [Arabidopsis thaliana]

 Score =  105 bits (261), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 45/65 (69%), Positives = 56/65 (86%)

Query: 1   MDVYRCKGVLSVKHSDQLHTLQAVREIYEIVPARKWRTEENQMNKIVFIGHHLNQDILQD 60
           MDVYRCK VLS+++SDQ+H LQAVR+IYEIVPARKW  EEN+ NKIVFIGH L++++L+ 
Sbjct: 308 MDVYRCKAVLSIQNSDQMHILQAVRDIYEIVPARKWSEEENRTNKIVFIGHKLDEEVLRS 367

Query: 61  SLRTC 65
            LR C
Sbjct: 368 GLRDC 372

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|62321492|dbj|BAD94941.1| hypothetical protein [Arabidopsis thaliana]

 Score =  105 bits (261), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 45/65 (69%), Positives = 56/65 (86%)

Query: 1   MDVYRCKGVLSVKHSDQLHTLQAVREIYEIVPARKWRTEENQMNKIVFIGHHLNQDILQD 60
           MDVYRCK VLS+++SDQ+H LQAVR+IYEIVPARKW  EEN+ NKIVFIGH L++++L+ 
Sbjct: 298 MDVYRCKAVLSIQNSDQMHILQAVRDIYEIVPARKWSEEENRTNKIVFIGHKLDEEVLRS 357

Query: 61  SLRTC 65
            LR C
Sbjct: 358 GLRDC 362

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	70
TAIR|locus:2197895	374	AT1G26520 "AT1G26520" [Arabido	0.928	0.173	0.692	1.5e-21
TAIR|locus:2036189	448	AT1G15730 [Arabidopsis thalian	0.942	0.147	0.469	2.7e-11
TAIR|locus:2198993	444	PTAC17 "plastid transcriptiona	0.942	0.148	0.409	2.4e-09
DICTYBASE|DDB_G0281589	396	DDB_G0281589 "COBW domain-cont	0.871	0.154	0.419	1.8e-08
RGD|708495	394	Cbwd1 "COBW domain containing	0.985	0.175	0.357	6e-07
UNIPROTKB|A6NM15	247	CBWD7 "Putative COBW domain-co	0.971	0.275	0.347	2.8e-06
ZFIN|ZDB-GENE-040426-2388	366	cbwd "COBW domain containing"	0.842	0.161	0.383	5e-06
UNIPROTKB|Q5JTY5	395	CBWD3 "COBW domain-containing	0.971	0.172	0.347	7.3e-06
UNIPROTKB|Q5RIA9	395	CBWD5 "COBW domain-containing	0.971	0.172	0.347	7.3e-06
MGI|MGI:2385089	393	Cbwd1 "COBW domain containing	0.914	0.162	0.323	1.2e-05

TAIR|locus:2197895 AT1G26520 "AT1G26520" [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 45/65 (69%), Positives = 56/65 (86%)

Query:     1 MDVYRCKGVLSVKHSDQLHTLQAVREIYEIVPARKWRTEENQMNKIVFIGHHLNQDILQD 60
             MDVYRCK VLS+++SDQ+H LQAVR+IYEIVPARKW  EEN+ NKIVFIGH L++++L+ 
Sbjct:   308 MDVYRCKAVLSIQNSDQMHILQAVRDIYEIVPARKWSEEENRTNKIVFIGHKLDEEVLRS 367

Query:    61 SLRTC 65
              LR C
Sbjct:   368 GLRDC 372

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2036189 AT1G15730 [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 2.7e-11, P = 2.7e-11
 Identities = 31/66 (46%), Positives = 43/66 (65%)

Query:     2 DVYRCKGVLSVKHSDQLHTLQAVREIYEIVPARKWRTEENQMNKIVFIGHHLNQDILQDS 61
             D+YR KG+LSV+  D+    Q V EI+E  P R WR +E + NKIVFIG +LN++ L+  
Sbjct:   383 DIYRMKGILSVQDMDERFVFQGVHEIFEGSPDRLWRKDETRTNKIVFIGKNLNREELEMG 442

Query:    62 LRTCTL 67
              R C +
Sbjct:   443 FRACLI 448

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2198993 PTAC17 "plastid transcriptionally active 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 2.4e-09, P = 2.4e-09
 Identities = 27/66 (40%), Positives = 42/66 (63%)

Query:     2 DVYRCKGVLSVKHSDQLHTLQAVREIYEIVPARKWRTEENQMNKIVFIGHHLNQDILQDS 61
             D+YR KG+LSV   ++    Q V +I++  P R W  EE ++NKIVFIG +LN++ L+  
Sbjct:   379 DIYRMKGLLSVHTMEERFVFQGVHDIFQGSPDRLWGREEERVNKIVFIGKNLNREELEKG 438

Query:    62 LRTCTL 67
              + C +
Sbjct:   439 FKACLI 444

GO:0009295 "nucleoid" evidence=IDA

GO:0009508 "plastid chromosome" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

DICTYBASE|DDB_G0281589 DDB_G0281589 "COBW domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 136 (52.9 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 26/62 (41%), Positives = 41/62 (66%)

Query:     3 VYRCKGVLSVKHSDQLHTLQAVREIYEIVPARK-WRTEENQMNKIVFIGHHLNQDILQDS 61
             ++RCKG++SVK  D+ + LQ V   +E++P+   W  +E + NKIV IG  LNQ+ L+ S
Sbjct:   331 IFRCKGLISVKGQDEKYILQGVYATFEVLPSGLLWSKDEKRHNKIVLIGESLNQNELEQS 390

Query:    62 LR 63
              +
Sbjct:   391 FK 392

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

RGD|708495 Cbwd1 "COBW domain containing 1" [Rattus norvegicus (taxid:10116)]

 Score = 122 (48.0 bits), Expect = 6.0e-07, P = 6.0e-07
 Identities = 25/70 (35%), Positives = 42/70 (60%)

Query:     1 MDVYRCKGVLSVKHSDQLHTLQAVREIYEIVPAR-KWRTEENQMNKIVFIGHHLNQDILQ 59
             M+V R KG++S+K   Q   +Q + E+YE+  +R  W+ +  +  ++VFIG +L++DILQ
Sbjct:   309 MEVIRLKGLVSIKDKPQQMIVQGIHELYELEESRVNWKDDAERACQLVFIGKNLDKDILQ 368

Query:    60 DSLRTCTLAT 69
                 T    T
Sbjct:   369 QLFITAVAET 378

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|A6NM15 CBWD7 "Putative COBW domain-containing protein 7" [Homo sapiens (taxid:9606)]

 Score = 112 (44.5 bits), Expect = 2.8e-06, P = 2.8e-06
 Identities = 25/72 (34%), Positives = 43/72 (59%)

Query:     1 MDVYRCKGVLSVKHSDQLHTLQAVREIYEI--VPARKWRTEENQMNKIVFIGHHLNQDIL 58
             M+V R KG++S+K   Q   +Q V E+Y++   P   W+ +  + N++V IG +L++DIL
Sbjct:   163 MEVIRLKGLVSIKDKSQQVIVQGVHELYDLEETPV-SWKDDTERTNRLVLIGRNLDKDIL 221

Query:    59 QDSLRTCTLATT 70
             +  L   T+  T
Sbjct:   222 KQ-LFIATVTET 232

GO:0005524 "ATP binding" evidence=IEA

ZFIN|ZDB-GENE-040426-2388 cbwd "COBW domain containing" [Danio rerio (taxid:7955)]

 Score = 113 (44.8 bits), Expect = 5.0e-06, P = 5.0e-06
 Identities = 23/60 (38%), Positives = 39/60 (65%)

Query:     1 MDVYRCKGVLSVKHSDQLHTLQAVREIYEIVPARK-WRTEENQMNKIVFIGHHLNQDILQ 59
             M V R KG+LS++   +   LQ V E+YE+    + W  +E ++N++VFIG +L+ +IL+
Sbjct:   293 MTVIRLKGILSLQQKQKKVMLQGVHELYELEETPEFWADQEPRLNRLVFIGRNLDGEILK 352

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q5JTY5 CBWD3 "COBW domain-containing protein 3" [Homo sapiens (taxid:9606)]

 Score = 112 (44.5 bits), Expect = 7.3e-06, P = 7.3e-06
 Identities = 25/72 (34%), Positives = 43/72 (59%)

Query:     1 MDVYRCKGVLSVKHSDQLHTLQAVREIYEI--VPARKWRTEENQMNKIVFIGHHLNQDIL 58
             M+V R KG++S+K   Q   +Q V E+Y++   P   W+ +  + N++V IG +L++DIL
Sbjct:   311 MEVIRLKGLVSIKDKSQQVIVQGVHELYDLEETPV-SWKDDTERTNRLVLIGRNLDKDIL 369

Query:    59 QDSLRTCTLATT 70
             +  L   T+  T
Sbjct:   370 KQ-LFIATVTET 380

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q5RIA9 CBWD5 "COBW domain-containing protein 5" [Homo sapiens (taxid:9606)]

 Score = 112 (44.5 bits), Expect = 7.3e-06, P = 7.3e-06
 Identities = 25/72 (34%), Positives = 43/72 (59%)

Query:     1 MDVYRCKGVLSVKHSDQLHTLQAVREIYEI--VPARKWRTEENQMNKIVFIGHHLNQDIL 58
             M+V R KG++S+K   Q   +Q V E+Y++   P   W+ +  + N++V IG +L++DIL
Sbjct:   311 MEVIRLKGLVSIKDKSQQVIVQGVHELYDLEETPV-SWKDDTERTNRLVLIGRNLDKDIL 369

Query:    59 QDSLRTCTLATT 70
             +  L   T+  T
Sbjct:   370 KQ-LFIATVTET 380

GO:0005524 "ATP binding" evidence=IEA

MGI|MGI:2385089 Cbwd1 "COBW domain containing 1" [Mus musculus (taxid:10090)]

 Score = 110 (43.8 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 21/65 (32%), Positives = 40/65 (61%)

Query:     1 MDVYRCKGVLSVKHSDQLHTLQAVREIYEIVPAR-KWRTEENQMNKIVFIGHHLNQDILQ 59
             M+V R KG++S+K   Q   +Q + E+Y++  +   W+ +  +  ++VFIG +L++D+LQ
Sbjct:   308 MEVIRLKGLVSIKDKPQQMIVQGIHELYDLEESLVNWKDDAERACQLVFIGRNLDKDVLQ 367

Query:    60 DSLRT 64
                 T
Sbjct:   368 QLFLT 372

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0010023101 hypothetical protein (375 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	70
pfam07683	94	pfam07683, CobW_C, Cobalamin synthesis protein cob	2e-16
smart00833	92	smart00833, CobW_C, Cobalamin synthesis protein co	2e-08
COG0523	323	COG0523, COG0523, Putative GTPases (G3E family) [G	1e-07

>gnl|CDD|219512 pfam07683, CobW_C, Cobalamin synthesis protein cobW C-terminal domain

 Score = 66.5 bits (163), Expect = 2e-16
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 2  DVYRCKGVLSVKHSDQLHTLQAVREIYEIVPA-RKWRTEENQMNKIVFIGHHLNQDILQD 60
           + R KG+L +         Q V     + PA R W  +E++ +++VFIG  L+++ L+ 
Sbjct: 29 GILRAKGILWLAGRPDPLVFQGVGGRLSLEPAGRWWAPDEDRRSRLVFIGRDLDREALRA 88

Query: 61 SLRTC 65
          +L  C
Sbjct: 89 ALDAC 93

This is a large and diverse family of putative metal chaperones that can be separated into up to 15 subgroups. In addition to known roles in cobalamin biosynthesis and the activation of the Fe-type nitrile hydratase, this family is also known to be involved in the response to zinc limitation. The CobW subgroup involved in cobalamin synthesis represents only a small sub-fraction of the family. Length = 94

>gnl|CDD|214844 smart00833, CobW_C, Cobalamin synthesis protein cobW C-terminal domain

 Score = 45.7 bits (109), Expect = 2e-08
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 3  VYRCKGVLSVK-HSDQLHTLQAVREIYEIVPARKWRTEENQMNKIVFIGHHLNQDILQDS 61
          V R KG   +    D    L        I PA  W    ++  ++VFIG  L+++ ++ +
Sbjct: 28 VLRAKGFFWLASRPDLPGVLSQAGGRLRIEPAGAWPAAGDRRTRLVFIGRDLDEEAIRAA 87

Query: 62 LRTC 65
          L  C
Sbjct: 88 LDAC 91

CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents the C-terminal domain found in CobW, as well as in P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression. Length = 92

>gnl|CDD|223597 COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]

 Score = 46.1 bits (110), Expect = 1e-07
 Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 2/68 (2%)

Query: 2   DVYRCKGVLSVK-HSDQLHTLQAVREIYEIVPA-RKWRTEENQMNKIVFIGHHLNQDILQ 59
            V R KG+L +     +    Q V  ++E+ PA R+W  E ++ +++VFIG  L+ + ++
Sbjct: 255 KVLRAKGILWIAEGPPRRLVFQGVGGVFEVPPAGREWPAEGDRKSRLVFIGRDLDDEAIR 314

Query: 60  DSLRTCTL 67
           ++     L
Sbjct: 315 EAFLAALL 322

Length = 323

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	70
PF07683	94	CobW_C: Cobalamin synthesis protein cobW C-termina	99.85
smart00833	92	CobW_C Cobalamin synthesis protein cobW C-terminal	99.83
PRK11537	318	putative GTP-binding protein YjiA; Provisional	99.69
KOG2743	391	consensus Cobalamin synthesis protein [Coenzyme tr	99.66
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	99.65
COG0523	323	Putative GTPases (G3E family) [General function pr	99.43

>PF07683 CobW_C: Cobalamin synthesis protein cobW C-terminal domain; InterPro: IPR011629 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=99.85  E-value=2.1e-21  Score=109.24  Aligned_cols=66  Identities=33%  Similarity=0.656  Sum_probs=48.7

Q ss_pred             CceEEeeEEEEeccCCceEEEEccceEEEeecCCC-CCc--cCCccceEEEEeCCCCHHHHHHHHhhcc
Q 035229            1 MDVYRCKGVLSVKHSDQLHTLQAVREIYEIVPARK-WRT--EENQMNKIVFIGHHLNQDILQDSLRTCT   66 (70)
Q Consensus         1 ~~vlR~KGiv~~~~~~~~~~~q~V~~~~~~~~~~~-~~~--~~~~~~~lVfIG~~ld~~~l~~~l~~~~   66 (70)
                      .+|||+||++++.+.+.+++||+|++++++.+.+. |++  ...+.++|||||++||++.|++.|++|+
T Consensus        26 ~~vlR~KG~v~~~~~~~~~~~q~v~~~~~~~~~~~~~~~~~~~~~~~~lV~IG~~ld~~~l~~~l~~cl   94 (94)
T PF07683_consen   26 GDVLRAKGIVWVADGPRRLVFQGVGGRYDIEPAGRWWPPMLGEDRDSRLVFIGKNLDKEALREALDACL   94 (94)
T ss_dssp             TTEEEEEEEE-BTT-SEEEEEEEETTEEEEE-EEEE-TT---S---EEEEEEEES--HHHHHHHHHT--
T ss_pred             CCEEEEEEEEEeCCcCeEEEEEeeCCEEEecccccccccccCCCCCeEEEEEECCCCHHHHHHHHHccC
Confidence            36999999999999888999999999999997654 432  3567899999999999999999999996

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents the C-terminal domain found in CobW, as well as in P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [].; PDB: 1NIJ_A.

>smart00833 CobW_C Cobalamin synthesis protein cobW C-terminal domain

Probab=99.83  E-value=3.8e-20  Score=103.53  Aligned_cols=65  Identities=25%  Similarity=0.496  Sum_probs=57.5

Q ss_pred             ceEEeeEEEEeccCC-ceEEEEccceEEEeecCCCCCccCCccceEEEEeCCCCHHHHHHHHhhcc
Q 035229            2 DVYRCKGVLSVKHSD-QLHTLQAVREIYEIVPARKWRTEENQMNKIVFIGHHLNQDILQDSLRTCT   66 (70)
Q Consensus         2 ~vlR~KGiv~~~~~~-~~~~~q~V~~~~~~~~~~~~~~~~~~~~~lVfIG~~ld~~~l~~~l~~~~   66 (70)
                      +|||+||++++.+.+ .+++||+|++++++.+.+.|++++.+.++|||||++||++.|++.|.+|+
T Consensus        27 ~i~R~KG~v~~~~~~~~~~~~q~v~~~~~~~~~~~~~~~~~~~~~lV~IG~~l~~~~l~~~l~~~~   92 (92)
T smart00833       27 GVLRAKGFFWLASRPDLPGVLSGAGGRLRIEPAGAWPAAGDRRTRLVFIGRDLDEEAIRAALDACL   92 (92)
T ss_pred             CeEEEEEEEEeCCCCCeEEEEEccCCeeEcccCCCCCCCCCcceEEEEEeCCCCHHHHHHHHHHhC
Confidence            589999999998776 67899999999999887778765456789999999999999999999985

CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis PUBMED:12869542. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents the C-terminal domain found in CobW, as well as in P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression PUBMED:7765511.

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=99.69  E-value=7.3e-17  Score=108.02  Aligned_cols=63  Identities=24%  Similarity=0.426  Sum_probs=55.4

Q ss_pred             ceEEeeEEEEeccCCceEEEEccceEEEeecCCCCCccCCccceEEEEeCCCCHHHHHHHHhhc
Q 035229            2 DVYRCKGVLSVKHSDQLHTLQAVREIYEIVPARKWRTEENQMNKIVFIGHHLNQDILQDSLRTC   65 (70)
Q Consensus         2 ~vlR~KGiv~~~~~~~~~~~q~V~~~~~~~~~~~~~~~~~~~~~lVfIG~~ld~~~l~~~l~~~   65 (70)
                      +|||+||++++++++.+++||+|++++.+....+|++ +++.++|||||++||++.|++.|++|
T Consensus       254 ~i~R~KG~v~~~~~~~~~~~q~v~~~~~~~~~~~~~~-~~~~~~lVfIG~~ld~~~l~~~l~~l  316 (318)
T PRK11537        254 KLLRYKGMLWIDGEPNRLLFQGVQRLYSADWDRPWGD-ETPHSTLVFIGIQLPEEEIRAAFAGL  316 (318)
T ss_pred             ceEEeeeEEEeCCCCCEEEEEEehhhcccCccccCCC-CCCceEEEEEcCCCCHHHHHHHHHhh
Confidence            5899999999999888899999999998766666864 45678999999999999999999875

>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]

Probab=99.66  E-value=1.7e-16  Score=106.31  Aligned_cols=65  Identities=43%  Similarity=0.769  Sum_probs=59.7

Q ss_pred             CceEEeeEEEEeccCCceEEEEccceEEEeecCCCCCccCCccceEEEEeCCCCHHHHHHHHhhcc
Q 035229            1 MDVYRCKGVLSVKHSDQLHTLQAVREIYEIVPARKWRTEENQMNKIVFIGHHLNQDILQDSLRTCT   66 (70)
Q Consensus         1 ~~vlR~KGiv~~~~~~~~~~~q~V~~~~~~~~~~~~~~~~~~~~~lVfIG~~ld~~~l~~~l~~~~   66 (70)
                      |.|||+||++...+.+.+++||+|+..|+..| ..|..+..+.+++||||+||+++.|++.|.+|+
T Consensus       326 ~evyR~KGllsi~d~~~~~i~QGV~e~~e~~P-~~w~~d~~~~~kiVliGknL~re~le~~~~~~l  390 (391)
T KOG2743|consen  326 MEVYRLKGLLSIKDKDQQVIFQGVHELYEETP-VSWKKDFERTNKIVLIGKNLDKEILEQLFRATL  390 (391)
T ss_pred             eeEEEeeeeEEeccCCeeEEeechhhhhccCc-ccccccccccceEEEEecccCHHHHHHHHHhhc
Confidence            56999999999999999999999999999888 568877777789999999999999999999987

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=99.65  E-value=3.9e-16  Score=105.30  Aligned_cols=61  Identities=30%  Similarity=0.460  Sum_probs=53.2

Q ss_pred             ceEEeeEEEEeccCCceEEEEccceEEEeecCCCCCccCCccceEEEEeCC-CCHHHHHHHH
Q 035229            2 DVYRCKGVLSVKHSDQLHTLQAVREIYEIVPARKWRTEENQMNKIVFIGHH-LNQDILQDSL   62 (70)
Q Consensus         2 ~vlR~KGiv~~~~~~~~~~~q~V~~~~~~~~~~~~~~~~~~~~~lVfIG~~-ld~~~l~~~l   62 (70)
                      +|||+||++++.+.+.+++||+|++++++....+|+...++.++|||||++ ||++.|++.|
T Consensus       280 ~i~R~KGiv~~~~~~~~~~~q~v~~~~~~~~~~~~~~~~~~~~~lV~IG~~~ld~~~l~~~l  341 (341)
T TIGR02475       280 DVLRIKGFAAVPGKPMRLLVQGVGQRVDSYYDRPWQAAETRQTRLVVIGLHDLDQAAIRAAL  341 (341)
T ss_pred             ceEEeeEEEEeCCCCcEEEEEcccceeccCcccCCCCCCCCCceEEEEecCCCCHHHHHhhC
Confidence            589999999999988899999999999987666786544667899999999 9999998764

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=99.43  E-value=4.3e-13  Score=90.24  Aligned_cols=66  Identities=27%  Similarity=0.622  Sum_probs=57.7

Q ss_pred             ceEEeeEEEEec-cCCceEEEEccceEEEeec-CCCCCccCCccceEEEEeCCCCHHHHHHHHhhccc
Q 035229            2 DVYRCKGVLSVK-HSDQLHTLQAVREIYEIVP-ARKWRTEENQMNKIVFIGHHLNQDILQDSLRTCTL   67 (70)
Q Consensus         2 ~vlR~KGiv~~~-~~~~~~~~q~V~~~~~~~~-~~~~~~~~~~~~~lVfIG~~ld~~~l~~~l~~~~~   67 (70)
                      +++|+||++|+. +.+.++++|+|++.++... ...|+.++.+.+++||||++++.+.+++.+.+|+.
T Consensus       255 ~v~R~KG~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~s~lv~Ig~~~~~~~~~~~~~~~~~  322 (323)
T COG0523         255 KVLRAKGILWIAEGPPRRLVFQGVGGVFEVPPAGREWPAEGDRKSRLVFIGRDLDDEAIREAFLAALL  322 (323)
T ss_pred             ceEEEeeEEecCCCCCeEEEEecccccccccccccccccccCccceEEEEecCcchHHHHHHHHHHhc
Confidence            599999999999 6678899999999999844 45687767889999999999999999999988864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	70
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	2e-18

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 Length = 318

 Score = 75.3 bits (186), Expect = 2e-18
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 1   MDVYRCKGVLSVKHSDQLHTLQAVREIYEIVPARKWRTEENQMNKIVFIGHHLNQDILQD 60
             + R KG+L +         Q V+ +Y     R W  E+   + +VFIG  L ++ ++ 
Sbjct: 253 DKLLRYKGMLWIDGEPNRLLFQGVQRLYSADWDRPWGDEKPH-STMVFIGIQLPEEEIRA 311

Query: 61  SLRTC 65
           +    
Sbjct: 312 AFAGL 316

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	70
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	99.68

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=99.68  E-value=9.7e-17  Score=105.44  Aligned_cols=65  Identities=23%  Similarity=0.415  Sum_probs=57.4

Q ss_pred             ceEEeeEEEEeccCCceEEEEccceEEEeecCCCCCccCCccceEEEEeCCCCHHHHHHHHhhccc
Q 035229            2 DVYRCKGVLSVKHSDQLHTLQAVREIYEIVPARKWRTEENQMNKIVFIGHHLNQDILQDSLRTCTL   67 (70)
Q Consensus         2 ~vlR~KGiv~~~~~~~~~~~q~V~~~~~~~~~~~~~~~~~~~~~lVfIG~~ld~~~l~~~l~~~~~   67 (70)
                      +|+|+||++|+++++.+++||+|+..++.....+|+ .+++.++|||||+++|++.|++.|++|+.
T Consensus       254 ~v~R~KG~~~~~~~~~~~~~~gv~~~~~~~~~~~~~-~~~~~~~lv~Ig~~ld~~~l~~~l~~~l~  318 (318)
T 1nij_A          254 KLLRYKGMLWIDGEPNRLLFQGVQRLYSADWDRPWG-DEKPHSTMVFIGIQLPEEEIRAAFAGLRK  318 (318)
T ss_dssp             TEEEEEEEECBTTCSEEEEEEEETTEEEEEEEEECT-TSCCCEEEEEEEESCCHHHHHHHHHTTCC
T ss_pred             CEEEeeeEEEeCCCCcEEEEECCccEEeccccccCC-CCCCceEEEEEcCCCCHHHHHHHHHHHhC
Confidence            699999999999888899999999999876556685 34678999999999999999999999973

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	70
d1nija2	95	d.237.1.1 (A:224-318) Hypothetical protein YjiA, C	7e-14

>d1nija2 d.237.1.1 (A:224-318) Hypothetical protein YjiA, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 95

class: Alpha and beta proteins (a+b)
fold: Hypothetical protein YjiA, C-terminal domain
superfamily: Hypothetical protein YjiA, C-terminal domain
family: Hypothetical protein YjiA, C-terminal domain
domain: Hypothetical protein YjiA, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 58.5 bits (141), Expect = 7e-14
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 2  DVYRCKGVLSVKHSDQLHTLQAVREIYEIVPARKWRTEENQMNKIVFIGHHLNQDILQDS 61
           + R KG+L +         Q V+ +Y     R W  E+   + +VFIG  L ++ ++ +
Sbjct: 31 KLLRYKGMLWIDGEPNRLLFQGVQRLYSADWDRPWGDEKP-HSTMVFIGIQLPEEEIRAA 89

Query: 62 LRTC 65
              
Sbjct: 90 FAGL 93

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	70
d1nija2	95	Hypothetical protein YjiA, C-terminal domain {Esch	99.9

>d1nija2 d.237.1.1 (A:224-318) Hypothetical protein YjiA, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Hypothetical protein YjiA, C-terminal domain
superfamily: Hypothetical protein YjiA, C-terminal domain
family: Hypothetical protein YjiA, C-terminal domain
domain: Hypothetical protein YjiA, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=4.9e-24  Score=119.23  Aligned_cols=64  Identities=23%  Similarity=0.418  Sum_probs=59.3

Q ss_pred             ceEEeeEEEEeccCCceEEEEccceEEEeecCCCCCccCCccceEEEEeCCCCHHHHHHHHhhcc
Q 035229            2 DVYRCKGVLSVKHSDQLHTLQAVREIYEIVPARKWRTEENQMNKIVFIGHHLNQDILQDSLRTCT   66 (70)
Q Consensus         2 ~vlR~KGiv~~~~~~~~~~~q~V~~~~~~~~~~~~~~~~~~~~~lVfIG~~ld~~~l~~~l~~~~   66 (70)
                      +|||+||++++++++.++++|+|+.++++.+..+|++ +++.++|||||+|||++.|++.|++|.
T Consensus        31 ~ilR~KG~v~~~~~~~~~~~q~v~~~~~~~~~~~w~~-~~r~~~lVfIG~~Ld~~~l~~~l~~c~   94 (95)
T d1nija2          31 KLLRYKGMLWIDGEPNRLLFQGVQRLYSADWDRPWGD-EKPHSTMVFIGIQLPEEEIRAAFAGLR   94 (95)
T ss_dssp             TEEEEEEEECBTTCSEEEEEEEETTEEEEEEEEECTT-SCCCEEEEEEEESCCHHHHHHHHHTTC
T ss_pred             CEEEEEEEEEeccCCcceEEEEeeeEeccCcCCCCCC-CCCCCEEEEEeCCCCHHHHHHHHHHhc
Confidence            5999999999999999999999999999988878975 567899999999999999999999995