Citrus Sinensis ID: 035259


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------7
MADWGPVVIAVVLFVLLSPGLLFQLPGRNRVVEFGNMHTSGLSILVHTIIFFGLVTIFLIAIGVHIHTG
ccccHHHHHHHHHHHHHcccEEEEEcccccEEEEEcEEEHHHHHHHHHHHHHHHHHHHHHHHHEEEEcc
cccHHHHHHHHHHHHHHcccEEEEEcccccEEEEccccccHHHHHHHHHHHHHHHHHHHHHHccEEEcc
MADWGPVVIAVVLFVLLspgllfqlpgrnrvvefgnmhTSGLSILVHTIIFFGLVTIFLIAIGVHIHTG
MADWGPVVIAVVLFVLLSPGLLFQLPGRNRVVEFGNMHTSGLSILVHTIIFFGLVTIFLIAIGVHIHTG
MADWGPVVIAVVLFVLLSPGLLFQLPGRNRVVEFGNMHTSGLSILVHTIIFFGLVTIFLIAIGVHIHTG
***WGPVVIAVVLFVLLSPGLLFQLPGRNRVVEFGNMHTSGLSILVHTIIFFGLVTIFLIAIGVHIH**
*ADWGPVVIAVVLFVLLSPGLLFQLPGRNRVVEFGNMHTSGLSILVHTIIFFGLVTIFLIAIGVHIHTG
MADWGPVVIAVVLFVLLSPGLLFQLPGRNRVVEFGNMHTSGLSILVHTIIFFGLVTIFLIAIGVHIHTG
*ADWGPVVIAVVLFVLLSPGLLFQLPGRNRVVEFGNMHTSGLSILVHTIIFFGLVTIFLIAIGVHIHTG
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ooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooo
oooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooo
oooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooo
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MADWGPVVIAVVLFVLLSPGLLFQLPGRNRVVEFGNMHTSGLSILVHTIIFFGLVTIFLIAIGVHIHTG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query69
22407554369 predicted protein [Populus trichocarpa] 1.0 1.0 0.927 1e-27
35657000569 PREDICTED: uncharacterized protein LOC10 1.0 1.0 0.913 4e-27
35746294369 hypothetical protein MTR_3g085020 [Medic 1.0 1.0 0.898 4e-27
25554767869 conserved hypothetical protein [Ricinus 1.0 1.0 0.927 6e-27
35653807796 PREDICTED: uncharacterized protein LOC10 0.985 0.708 0.867 3e-26
225456353141 PREDICTED: uncharacterized protein LOC10 1.0 0.489 0.869 3e-26
22545148169 PREDICTED: uncharacterized protein LOC10 1.0 1.0 0.884 4e-26
356513423103 PREDICTED: uncharacterized protein LOC10 1.0 0.669 0.855 6e-26
297734435138 unnamed protein product [Vitis vinifera] 0.985 0.492 0.867 9e-26
44944053869 PREDICTED: uncharacterized protein LOC10 1.0 1.0 0.840 3e-25
>gi|224075543|ref|XP_002304675.1| predicted protein [Populus trichocarpa] gi|222842107|gb|EEE79654.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 64/69 (92%), Positives = 67/69 (97%)

Query: 1  MADWGPVVIAVVLFVLLSPGLLFQLPGRNRVVEFGNMHTSGLSILVHTIIFFGLVTIFLI 60
          M+DWGPVVIAVVLFVLLSPGLLFQLPGRNRVVEFGNM TS LSILVHTIIFFGL+TIFLI
Sbjct: 1  MSDWGPVVIAVVLFVLLSPGLLFQLPGRNRVVEFGNMQTSALSILVHTIIFFGLITIFLI 60

Query: 61 AIGVHIHTG 69
          AIGVHI+TG
Sbjct: 61 AIGVHIYTG 69




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570005|ref|XP_003553183.1| PREDICTED: uncharacterized protein LOC100527578 [Glycine max] Back     alignment and taxonomy information
>gi|357462943|ref|XP_003601753.1| hypothetical protein MTR_3g085020 [Medicago truncatula] gi|355490801|gb|AES72004.1| hypothetical protein MTR_3g085020 [Medicago truncatula] Back     alignment and taxonomy information
>gi|255547678|ref|XP_002514896.1| conserved hypothetical protein [Ricinus communis] gi|223545947|gb|EEF47450.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356538077|ref|XP_003537531.1| PREDICTED: uncharacterized protein LOC100787382 [Glycine max] Back     alignment and taxonomy information
>gi|225456353|ref|XP_002283942.1| PREDICTED: uncharacterized protein LOC100247554 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225451481|ref|XP_002271098.1| PREDICTED: uncharacterized protein LOC100246292 [Vitis vinifera] gi|296082328|emb|CBI21333.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356513423|ref|XP_003525413.1| PREDICTED: uncharacterized protein LOC100805083 [Glycine max] Back     alignment and taxonomy information
>gi|297734435|emb|CBI15682.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449440538|ref|XP_004138041.1| PREDICTED: uncharacterized protein LOC101212373 [Cucumis sativus] gi|449520509|ref|XP_004167276.1| PREDICTED: uncharacterized LOC101212373 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query69
TAIR|locus:211455089 AT3G48660 "AT3G48660" [Arabido 1.0 0.775 0.811 2.5e-26
TAIR|locus:216734169 AT5G63500 "AT5G63500" [Arabido 1.0 1.0 0.782 5.9e-25
TAIR|locus:216300669 AT5G40980 "AT5G40980" [Arabido 0.956 0.956 0.727 7.8e-23
TAIR|locus:207862870 AT3G01940 "AT3G01940" [Arabido 0.956 0.942 0.727 2.6e-22
TAIR|locus:451510313869 AT3G27027 "AT3G27027" [Arabido 0.942 0.942 0.707 1.5e-21
TAIR|locus:451510354069 AT5G08391 "AT5G08391" [Arabido 1.0 1.0 0.579 4.9e-21
TAIR|locus:2091985142 AT3G27030 "AT3G27030" [Arabido 1.0 0.485 0.608 1.7e-20
TAIR|locus:207861870 AT3G01950 "AT3G01950" [Arabido 0.942 0.928 0.569 8.3e-19
TAIR|locus:216299169 AT5G40970 "AT5G40970" [Arabido 1.0 1.0 0.579 8.3e-19
TAIR|locus:217466370 AT5G14110 "AT5G14110" [Arabido 0.942 0.928 0.538 5.8e-18
TAIR|locus:2114550 AT3G48660 "AT3G48660" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 56/69 (81%), Positives = 63/69 (91%)

Query:     1 MADWGPVVIAVVLFVLLSPGLLFQLPGRNRVVEFGNMHTSGLSILVHTIIFFGLVTIFLI 60
             MADWGPVV+AV+LFVLL+PGLLFQ+P R RVVEFGNM TSG SILVHTIIFFGL+TIF I
Sbjct:     1 MADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTI 60

Query:    61 AIGVHIHTG 69
             AI +HI+TG
Sbjct:    61 AIRLHIYTG 69




GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2167341 AT5G63500 "AT5G63500" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163006 AT5G40980 "AT5G40980" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078628 AT3G01940 "AT3G01940" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:4515103138 AT3G27027 "AT3G27027" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:4515103540 AT5G08391 "AT5G08391" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091985 AT3G27030 "AT3G27030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078618 AT3G01950 "AT3G01950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2162991 AT5G40970 "AT5G40970" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174663 AT5G14110 "AT5G14110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query69
pfam1182068 pfam11820, DUF3339, Protein of unknown function (D 4e-32
>gnl|CDD|192844 pfam11820, DUF3339, Protein of unknown function (DUF3339) Back     alignment and domain information
 Score =  105 bits (263), Expect = 4e-32
 Identities = 56/68 (82%), Positives = 64/68 (94%)

Query: 1  MADWGPVVIAVVLFVLLSPGLLFQLPGRNRVVEFGNMHTSGLSILVHTIIFFGLVTIFLI 60
          MADWGPV++AVVLFVLLSPGLLFQLPGRNRVVEFGNM TSG SILVHT++FF L+TIFL+
Sbjct: 1  MADWGPVLVAVVLFVLLSPGLLFQLPGRNRVVEFGNMQTSGKSILVHTLLFFALITIFLV 60

Query: 61 AIGVHIHT 68
          A+GVHI+ 
Sbjct: 61 ALGVHIYA 68


This family of proteins are functionally uncharacterized. This family is found in eukaryotes. Proteins in this family are about 70 amino acids in length. Length = 68

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 69
PF1182068 DUF3339: Protein of unknown function (DUF3339); In 100.0
COG2864218 FdnI Cytochrome b subunit of formate dehydrogenase 82.14
>PF11820 DUF3339: Protein of unknown function (DUF3339); InterPro: IPR021775 This family of proteins are functionally uncharacterised Back     alignment and domain information
Probab=100.00  E-value=5.9e-47  Score=237.88  Aligned_cols=68  Identities=85%  Similarity=1.358  Sum_probs=67.4

Q ss_pred             CCCchHHHHHHHHHHHhccceeEeecCCCceeEeecccchHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 035259            1 MADWGPVVIAVVLFVLLSPGLLFQLPGRNRVVEFGNMHTSGLSILVHTIIFFGLVTIFLIAIGVHIHT   68 (69)
Q Consensus         1 m~DWgPV~i~vvLFvlLsPGLLfQ~PG~~r~veFgn~~Tsg~si~vHa~ifF~l~~if~~ai~vHiy~   68 (69)
                      |+|||||+||++||++||||||||+|||+|++|||||||||+||+|||++||+++++|++|+++|+|+
T Consensus         1 M~DWgpv~i~vvLFvlLsPGLLfqlPG~~r~veFgn~~Tsg~si~vHa~iff~l~~i~~va~~vhiy~   68 (68)
T PF11820_consen    1 MADWGPVLIAVVLFVLLSPGLLFQLPGRGRVVEFGNMKTSGKSILVHALIFFALFTIFLVAIGVHIYT   68 (68)
T ss_pred             CCcchhHHHHHHHHHHhCCceEEEecCCCceEEEcCCcchHHHHHHHHHHHHHHHHHHHHHheeEeeC
Confidence            89999999999999999999999999999999999999999999999999999999999999999996



This family is found in eukaryotes. Proteins in this family are about 70 amino acids in length.

>COG2864 FdnI Cytochrome b subunit of formate dehydrogenase [Energy production and conversion] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00