Citrus Sinensis ID: 035259
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 69 | ||||||
| 224075543 | 69 | predicted protein [Populus trichocarpa] | 1.0 | 1.0 | 0.927 | 1e-27 | |
| 356570005 | 69 | PREDICTED: uncharacterized protein LOC10 | 1.0 | 1.0 | 0.913 | 4e-27 | |
| 357462943 | 69 | hypothetical protein MTR_3g085020 [Medic | 1.0 | 1.0 | 0.898 | 4e-27 | |
| 255547678 | 69 | conserved hypothetical protein [Ricinus | 1.0 | 1.0 | 0.927 | 6e-27 | |
| 356538077 | 96 | PREDICTED: uncharacterized protein LOC10 | 0.985 | 0.708 | 0.867 | 3e-26 | |
| 225456353 | 141 | PREDICTED: uncharacterized protein LOC10 | 1.0 | 0.489 | 0.869 | 3e-26 | |
| 225451481 | 69 | PREDICTED: uncharacterized protein LOC10 | 1.0 | 1.0 | 0.884 | 4e-26 | |
| 356513423 | 103 | PREDICTED: uncharacterized protein LOC10 | 1.0 | 0.669 | 0.855 | 6e-26 | |
| 297734435 | 138 | unnamed protein product [Vitis vinifera] | 0.985 | 0.492 | 0.867 | 9e-26 | |
| 449440538 | 69 | PREDICTED: uncharacterized protein LOC10 | 1.0 | 1.0 | 0.840 | 3e-25 |
| >gi|224075543|ref|XP_002304675.1| predicted protein [Populus trichocarpa] gi|222842107|gb|EEE79654.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/69 (92%), Positives = 67/69 (97%)
Query: 1 MADWGPVVIAVVLFVLLSPGLLFQLPGRNRVVEFGNMHTSGLSILVHTIIFFGLVTIFLI 60
M+DWGPVVIAVVLFVLLSPGLLFQLPGRNRVVEFGNM TS LSILVHTIIFFGL+TIFLI
Sbjct: 1 MSDWGPVVIAVVLFVLLSPGLLFQLPGRNRVVEFGNMQTSALSILVHTIIFFGLITIFLI 60
Query: 61 AIGVHIHTG 69
AIGVHI+TG
Sbjct: 61 AIGVHIYTG 69
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356570005|ref|XP_003553183.1| PREDICTED: uncharacterized protein LOC100527578 [Glycine max] | Back alignment and taxonomy information |
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| >gi|357462943|ref|XP_003601753.1| hypothetical protein MTR_3g085020 [Medicago truncatula] gi|355490801|gb|AES72004.1| hypothetical protein MTR_3g085020 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|255547678|ref|XP_002514896.1| conserved hypothetical protein [Ricinus communis] gi|223545947|gb|EEF47450.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|356538077|ref|XP_003537531.1| PREDICTED: uncharacterized protein LOC100787382 [Glycine max] | Back alignment and taxonomy information |
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| >gi|225456353|ref|XP_002283942.1| PREDICTED: uncharacterized protein LOC100247554 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|225451481|ref|XP_002271098.1| PREDICTED: uncharacterized protein LOC100246292 [Vitis vinifera] gi|296082328|emb|CBI21333.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356513423|ref|XP_003525413.1| PREDICTED: uncharacterized protein LOC100805083 [Glycine max] | Back alignment and taxonomy information |
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| >gi|297734435|emb|CBI15682.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449440538|ref|XP_004138041.1| PREDICTED: uncharacterized protein LOC101212373 [Cucumis sativus] gi|449520509|ref|XP_004167276.1| PREDICTED: uncharacterized LOC101212373 [Cucumis sativus] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 69 | ||||||
| TAIR|locus:2114550 | 89 | AT3G48660 "AT3G48660" [Arabido | 1.0 | 0.775 | 0.811 | 2.5e-26 | |
| TAIR|locus:2167341 | 69 | AT5G63500 "AT5G63500" [Arabido | 1.0 | 1.0 | 0.782 | 5.9e-25 | |
| TAIR|locus:2163006 | 69 | AT5G40980 "AT5G40980" [Arabido | 0.956 | 0.956 | 0.727 | 7.8e-23 | |
| TAIR|locus:2078628 | 70 | AT3G01940 "AT3G01940" [Arabido | 0.956 | 0.942 | 0.727 | 2.6e-22 | |
| TAIR|locus:4515103138 | 69 | AT3G27027 "AT3G27027" [Arabido | 0.942 | 0.942 | 0.707 | 1.5e-21 | |
| TAIR|locus:4515103540 | 69 | AT5G08391 "AT5G08391" [Arabido | 1.0 | 1.0 | 0.579 | 4.9e-21 | |
| TAIR|locus:2091985 | 142 | AT3G27030 "AT3G27030" [Arabido | 1.0 | 0.485 | 0.608 | 1.7e-20 | |
| TAIR|locus:2078618 | 70 | AT3G01950 "AT3G01950" [Arabido | 0.942 | 0.928 | 0.569 | 8.3e-19 | |
| TAIR|locus:2162991 | 69 | AT5G40970 "AT5G40970" [Arabido | 1.0 | 1.0 | 0.579 | 8.3e-19 | |
| TAIR|locus:2174663 | 70 | AT5G14110 "AT5G14110" [Arabido | 0.942 | 0.928 | 0.538 | 5.8e-18 |
| TAIR|locus:2114550 AT3G48660 "AT3G48660" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 56/69 (81%), Positives = 63/69 (91%)
Query: 1 MADWGPVVIAVVLFVLLSPGLLFQLPGRNRVVEFGNMHTSGLSILVHTIIFFGLVTIFLI 60
MADWGPVV+AV+LFVLL+PGLLFQ+P R RVVEFGNM TSG SILVHTIIFFGL+TIF I
Sbjct: 1 MADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTI 60
Query: 61 AIGVHIHTG 69
AI +HI+TG
Sbjct: 61 AIRLHIYTG 69
|
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| TAIR|locus:2167341 AT5G63500 "AT5G63500" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2163006 AT5G40980 "AT5G40980" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2078628 AT3G01940 "AT3G01940" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:4515103138 AT3G27027 "AT3G27027" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:4515103540 AT5G08391 "AT5G08391" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2091985 AT3G27030 "AT3G27030" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2078618 AT3G01950 "AT3G01950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2162991 AT5G40970 "AT5G40970" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2174663 AT5G14110 "AT5G14110" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 69 | |||
| pfam11820 | 68 | pfam11820, DUF3339, Protein of unknown function (D | 4e-32 |
| >gnl|CDD|192844 pfam11820, DUF3339, Protein of unknown function (DUF3339) | Back alignment and domain information |
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Score = 105 bits (263), Expect = 4e-32
Identities = 56/68 (82%), Positives = 64/68 (94%)
Query: 1 MADWGPVVIAVVLFVLLSPGLLFQLPGRNRVVEFGNMHTSGLSILVHTIIFFGLVTIFLI 60
MADWGPV++AVVLFVLLSPGLLFQLPGRNRVVEFGNM TSG SILVHT++FF L+TIFL+
Sbjct: 1 MADWGPVLVAVVLFVLLSPGLLFQLPGRNRVVEFGNMQTSGKSILVHTLLFFALITIFLV 60
Query: 61 AIGVHIHT 68
A+GVHI+
Sbjct: 61 ALGVHIYA 68
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This family of proteins are functionally uncharacterized. This family is found in eukaryotes. Proteins in this family are about 70 amino acids in length. Length = 68 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 69 | |||
| PF11820 | 68 | DUF3339: Protein of unknown function (DUF3339); In | 100.0 | |
| COG2864 | 218 | FdnI Cytochrome b subunit of formate dehydrogenase | 82.14 |
| >PF11820 DUF3339: Protein of unknown function (DUF3339); InterPro: IPR021775 This family of proteins are functionally uncharacterised | Back alignment and domain information |
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Probab=100.00 E-value=5.9e-47 Score=237.88 Aligned_cols=68 Identities=85% Similarity=1.358 Sum_probs=67.4
Q ss_pred CCCchHHHHHHHHHHHhccceeEeecCCCceeEeecccchHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 035259 1 MADWGPVVIAVVLFVLLSPGLLFQLPGRNRVVEFGNMHTSGLSILVHTIIFFGLVTIFLIAIGVHIHT 68 (69)
Q Consensus 1 m~DWgPV~i~vvLFvlLsPGLLfQ~PG~~r~veFgn~~Tsg~si~vHa~ifF~l~~if~~ai~vHiy~ 68 (69)
|+|||||+||++||++||||||||+|||+|++|||||||||+||+|||++||+++++|++|+++|+|+
T Consensus 1 M~DWgpv~i~vvLFvlLsPGLLfqlPG~~r~veFgn~~Tsg~si~vHa~iff~l~~i~~va~~vhiy~ 68 (68)
T PF11820_consen 1 MADWGPVLIAVVLFVLLSPGLLFQLPGRGRVVEFGNMKTSGKSILVHALIFFALFTIFLVAIGVHIYT 68 (68)
T ss_pred CCcchhHHHHHHHHHHhCCceEEEecCCCceEEEcCCcchHHHHHHHHHHHHHHHHHHHHHheeEeeC
Confidence 89999999999999999999999999999999999999999999999999999999999999999996
|
This family is found in eukaryotes. Proteins in this family are about 70 amino acids in length. |
| >COG2864 FdnI Cytochrome b subunit of formate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
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Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00