Citrus Sinensis ID: 035274

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------7
Protein Sequence
MASSWRRTIGNLRSFVGNSMGGVRGGANLASWVVAGTLAYYLWVKPSQDLKREQEVQSFIHLLFDCYQF
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHEEcccHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccEccccHHHHcccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MASSWRRTIGNLRSFvgnsmggvrggANLASWVVAGTLAYYLwvkpsqdlkrEQEVQSFIHLLFDCYQF
Flexible Loop (DISEMBL)
masswrrtigNLRSFVGNSMGGVRGGANLASWVVAGTLAYYLWVKPSQDLKREQEVQSFIHLLFDCYQF
Low Complexity Region (SEG)
MASSWRRTIGNLRSFVGNSMGGVRGGANLASWVVAGTLAYYLWVKPSQDLKREQEVQSFIHLLFDCYQF
Disordered region (IsUnstruct)
*******TIGNLRSFVGNSMGGVRGGANLASWVVAGTLAYYLWVKPSQDLKREQEVQSFIHLLFDCY**
Disordered Region (DISOPRED)
*********GNLRSFVGNSMGGVRGGANLASWVVAGTLAYYLWV******************L******
Disordered Region (DISEMBL)
MASSWRRTIGNLRSFVGNSMGGVRGGANLASWVVAGTLAYYLWVKPSQDLKREQEVQSFIHLLFDCYQF
Disordered Region (DISPRO)
******RTIGNLRSFVGNSMGGVRGGANLASWVVAGTLAYYLWVKPSQDLKREQEVQSFIHLLFD****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASSWRRTIGNLRSFVGNSMGGVRGGANLASWVVAGTLAYYLWVKPSQDLKREQEVQSFIHLLFDCYQF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	69
255539336	98	conserved hypothetical protein [Ricinus	0.985	0.693	0.676	4e-22
388510170	100	unknown [Medicago truncatula]	1.0	0.69	0.695	6e-22
225457662	97	PREDICTED: uncharacterized protein LOC10	1.0	0.711	0.681	6e-22
357467189	130	hypothetical protein MTR_3g116150 [Medic	1.0	0.530	0.695	9e-22
351725643	100	uncharacterized protein LOC100527639 [Gl	1.0	0.69	0.714	2e-21
449438867	97	PREDICTED: uncharacterized protein LOC10	0.971	0.690	0.705	3e-21
224083370	96	predicted protein [Populus trichocarpa]	0.985	0.708	0.652	1e-20
30685765	193	uncharacterized protein [Arabidopsis tha	0.985	0.352	0.652	3e-20
110735721	148	hypothetical protein [Arabidopsis thalia	0.985	0.459	0.652	3e-20
26452982	96	unknown protein [Arabidopsis thaliana]	0.985	0.708	0.652	4e-20

>gi|255539336|ref|XP_002510733.1| conserved hypothetical protein [Ricinus communis] gi|223551434|gb|EEF52920.1| conserved hypothetical protein [Ricinus communis]

 Score =  108 bits (270), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 46/68 (67%), Positives = 61/68 (89%)

Query: 2  ASSWRRTIGNLRSFVGNSMGGVRGGANLASWVVAGTLAYYLWVKPSQDLKREQEVQSFIH 61
          +S+WRRT+GN+RSF+GNSMGG+RGG+N+ASWVVAGTLAY+LW+KPSQDL+REQE ++ I 
Sbjct: 3  SSNWRRTLGNVRSFIGNSMGGLRGGSNIASWVVAGTLAYFLWIKPSQDLRREQEERAAIA 62

Query: 62 LLFDCYQF 69
             D Y++
Sbjct: 63 AASDPYRY 70

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510170|gb|AFK43151.1| unknown [Medicago truncatula]

 Score =  108 bits (269), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 48/69 (69%), Positives = 59/69 (85%)

Query: 1  MASSWRRTIGNLRSFVGNSMGGVRGGANLASWVVAGTLAYYLWVKPSQDLKREQEVQSFI 60
          MAS+WRRT+GN RSFV NSMGG+RGG+NLASWVVAGTLAYYLW+KP QDLKREQ+ ++ I
Sbjct: 1  MASNWRRTLGNARSFVNNSMGGLRGGSNLASWVVAGTLAYYLWIKPDQDLKREQQAKAAI 60

Query: 61 HLLFDCYQF 69
              D +++
Sbjct: 61 ASHDDPFRY 69

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457662|ref|XP_002275896.1| PREDICTED: uncharacterized protein LOC100259899 isoform 1 [Vitis vinifera] gi|297745609|emb|CBI40774.3| unnamed protein product [Vitis vinifera]

 Score =  107 bits (268), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 47/69 (68%), Positives = 61/69 (88%)

Query: 1  MASSWRRTIGNLRSFVGNSMGGVRGGANLASWVVAGTLAYYLWVKPSQDLKREQEVQSFI 60
          MASSWRR++GN+RSF+GN MGG+RGG+NLASWVVAGTLAY+LWVKPSQ+L+REQE ++ +
Sbjct: 1  MASSWRRSLGNMRSFIGNCMGGLRGGSNLASWVVAGTLAYFLWVKPSQELRREQEERAAL 60

Query: 61 HLLFDCYQF 69
              D Y++
Sbjct: 61 AAASDPYRY 69

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357467189|ref|XP_003603879.1| hypothetical protein MTR_3g116150 [Medicago truncatula] gi|355492927|gb|AES74130.1| hypothetical protein MTR_3g116150 [Medicago truncatula]

 Score =  107 bits (267), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 48/69 (69%), Positives = 59/69 (85%)

Query: 1  MASSWRRTIGNLRSFVGNSMGGVRGGANLASWVVAGTLAYYLWVKPSQDLKREQEVQSFI 60
          MAS+WRRT+GN RSFV NSMGG+RGG+NLASWVVAGTLAYYLW+KP QDLKREQ+ ++ I
Sbjct: 1  MASNWRRTLGNARSFVNNSMGGLRGGSNLASWVVAGTLAYYLWIKPDQDLKREQQAKAAI 60

Query: 61 HLLFDCYQF 69
              D +++
Sbjct: 61 ASHDDPFRY 69

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725643|ref|NP_001235308.1| uncharacterized protein LOC100527639 [Glycine max] gi|255632830|gb|ACU16768.1| unknown [Glycine max]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/70 (71%), Positives = 58/70 (82%), Gaps = 1/70 (1%)

Query: 1  MASSWRRTIGNLRSFVGNSMGGVRGGANLASWVVAGTLAYYLWVKPSQDLKRE-QEVQSF 59
          MASSWRRT GN+RSFV NSMGG+RGG+NLASWVVAGTLAY+LW+KPSQDLKRE QE  + 
Sbjct: 1  MASSWRRTFGNMRSFVSNSMGGLRGGSNLASWVVAGTLAYFLWIKPSQDLKREQQEKAAL 60

Query: 60 IHLLFDCYQF 69
               D Y++
Sbjct: 61 AAAESDPYRY 70

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438867|ref|XP_004137209.1| PREDICTED: uncharacterized protein LOC101205325 isoform 1 [Cucumis sativus] gi|449438869|ref|XP_004137210.1| PREDICTED: uncharacterized protein LOC101205325 isoform 2 [Cucumis sativus] gi|449438871|ref|XP_004137211.1| PREDICTED: uncharacterized protein LOC101205325 isoform 3 [Cucumis sativus] gi|449483208|ref|XP_004156522.1| PREDICTED: uncharacterized LOC101205325 isoform 1 [Cucumis sativus] gi|449483212|ref|XP_004156523.1| PREDICTED: uncharacterized LOC101205325 isoform 2 [Cucumis sativus] gi|449483215|ref|XP_004156524.1| PREDICTED: uncharacterized LOC101205325 isoform 3 [Cucumis sativus]

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/68 (70%), Positives = 62/68 (91%), Gaps = 1/68 (1%)

Query: 2  ASSWRRTIGNLRSFVGNSMGGVRGGANLASWVVAGTLAYYLWVKPSQDLKREQEVQSFIH 61
          +SSWRR++GN+RSF+GNSMGG+RGGANLASWVVAGTLAYYLWVKPSQDLKREQ+ ++ + 
Sbjct: 3  SSSWRRSLGNVRSFIGNSMGGLRGGANLASWVVAGTLAYYLWVKPSQDLKREQQERAALA 62

Query: 62 LLFDCYQF 69
           + D +++
Sbjct: 63 AV-DPHRY 69

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083370|ref|XP_002307000.1| predicted protein [Populus trichocarpa] gi|224148766|ref|XP_002336709.1| predicted protein [Populus trichocarpa] gi|222836564|gb|EEE74971.1| predicted protein [Populus trichocarpa] gi|222856449|gb|EEE93996.1| predicted protein [Populus trichocarpa]

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 45/69 (65%), Positives = 61/69 (88%), Gaps = 1/69 (1%)

Query: 1  MASSWRRTIGNLRSFVGNSMGGVRGGANLASWVVAGTLAYYLWVKPSQDLKREQEVQSFI 60
          M+S WRRT+GN+RSF+GNS+GG+RGG+N+ASW+VAGTLAYYLW+KPSQDLKR+QE ++ +
Sbjct: 1  MSSGWRRTVGNVRSFIGNSLGGLRGGSNVASWIVAGTLAYYLWIKPSQDLKRQQEERAAL 60

Query: 61 HLLFDCYQF 69
              D Y++
Sbjct: 61 -ASSDPYRY 68

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30685765|ref|NP_850214.1| uncharacterized protein [Arabidopsis thaliana] gi|330253762|gb|AEC08856.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  102 bits (254), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 45/69 (65%), Positives = 59/69 (85%), Gaps = 1/69 (1%)

Query: 1   MASSWRRTIGNLRSFVGNSMGGVRGGANLASWVVAGTLAYYLWVKPSQDLKREQEVQSFI 60
           MASSWRR+IGN+RSF+GNSMGG+RGG + ASWVVAGT+AY+LW+KP QDLK+EQE ++ +
Sbjct: 98  MASSWRRSIGNVRSFIGNSMGGLRGGQSAASWVVAGTIAYFLWIKPEQDLKKEQEARAAL 157

Query: 61  HLLFDCYQF 69
             + D  Q+
Sbjct: 158 -AMADTNQY 165

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110735721|dbj|BAE99840.1| hypothetical protein [Arabidopsis thaliana]

 Score =  102 bits (254), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 45/69 (65%), Positives = 59/69 (85%), Gaps = 1/69 (1%)

Query: 1   MASSWRRTIGNLRSFVGNSMGGVRGGANLASWVVAGTLAYYLWVKPSQDLKREQEVQSFI 60
           MASSWRR+IGN+RSF+GNSMGG+RGG + ASWVVAGT+AY+LW+KP QDLK+EQE ++ +
Sbjct: 53  MASSWRRSIGNVRSFIGNSMGGLRGGQSAASWVVAGTIAYFLWIKPEQDLKKEQEARAAL 112

Query: 61  HLLFDCYQF 69
             + D  Q+
Sbjct: 113 -AMADTNQY 120

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26452982|dbj|BAC43567.1| unknown protein [Arabidopsis thaliana]

 Score =  102 bits (253), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 45/69 (65%), Positives = 59/69 (85%), Gaps = 1/69 (1%)

Query: 1  MASSWRRTIGNLRSFVGNSMGGVRGGANLASWVVAGTLAYYLWVKPSQDLKREQEVQSFI 60
          MASSWRR+IGN+RSF+GNSMGG+RGG + ASWVVAGT+AY+LW+KP QDLK+EQE ++ +
Sbjct: 1  MASSWRRSIGNVRSFIGNSMGGLRGGQSAASWVVAGTIAYFLWIKPEQDLKKEQEARAAL 60

Query: 61 HLLFDCYQF 69
           +  D  Q+
Sbjct: 61 AMA-DTNQY 68

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	69
TAIR|locus:504956013	193	AT2G33585 "AT2G33585" [Arabido	0.985	0.352	0.652	1.5e-21

TAIR|locus:504956013 AT2G33585 "AT2G33585" [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 45/69 (65%), Positives = 59/69 (85%)

Query:     1 MASSWRRTIGNLRSFVGNSMGGVRGGANLASWVVAGTLAYYLWVKPSQDLKREQEVQSFI 60
             MASSWRR+IGN+RSF+GNSMGG+RGG + ASWVVAGT+AY+LW+KP QDLK+EQE ++ +
Sbjct:    98 MASSWRRSIGNVRSFIGNSMGGLRGGQSAASWVVAGTIAYFLWIKPEQDLKKEQEARAAL 157

Query:    61 HLLFDCYQF 69
              +  D  Q+
Sbjct:   158 AMA-DTNQY 165


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.136   0.440    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       69        69   0.00091  102 3  11 22  0.42    28
                                                     29  0.39    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  570 (61 KB)
  Total size of DFA:  113 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.82u 0.13s 7.95t   Elapsed:  00:00:01
  Total cpu time:  7.82u 0.13s 7.95t   Elapsed:  00:00:01
  Start:  Fri May 10 07:00:08 2013   End:  Fri May 10 07:00:09 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	69
PRK05886	109	yajC preprotein translocase subunit YajC; Validate	86.71
PF15141	84	DUF4574: Domain of unknown function (DUF4574)	83.11
TIGR00739	84	yajC preprotein translocase, YajC subunit. While t	82.1
PF05057	217	DUF676: Putative serine esterase (DUF676); InterPr	81.78

>PRK05886 yajC preprotein translocase subunit YajC; Validated

Probab=86.71  E-value=0.61  Score=31.25  Aligned_cols=29  Identities=3%  Similarity=-0.014  Sum_probs=22.2

Q ss_pred             hhHHHHHHhhhhhheeeecCchhhHHHHH
Q 035274           27 ANLASWVVAGTLAYYLWVKPSQDLKREQE   55 (69)
Q Consensus        27 ~nlAaW~VAG~lAYylwvkPe~~~~~eqe   55 (69)
                      ..+.-+++..++-|||.++|.|.+++|++
T Consensus         5 ~~ll~lv~i~~i~yF~~iRPQkKr~K~~~   33 (109)
T PRK05886          5 VLFLPFLLIMGGFMYFASRRQRKAMQATI   33 (109)
T ss_pred             HHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence            45666777788889999999877666654

>PF15141 DUF4574: Domain of unknown function (DUF4574)

Probab=83.11  E-value=1.1  Score=29.56  Aligned_cols=34  Identities=26%  Similarity=0.513  Sum_probs=22.0

Q ss_pred             ccccCCchhHHHHHHhhhhhheeee--cCchhhHHH
Q 035274           20 MGGVRGGANLASWVVAGTLAYYLWV--KPSQDLKRE   53 (69)
Q Consensus        20 mgG~RG~~nlAaW~VAG~lAYylwv--kPe~~~~~e   53 (69)
                      |+++|=--+..+=+-+||++|.||.  .|..++++|
T Consensus         1 M~~~r~~~~~~~llG~GGvG~~L~~LvtPgeerK~e   36 (84)
T PF15141_consen    1 MSSLRKALSVVALLGFGGVGYALFVLVTPGEERKQE   36 (84)
T ss_pred             CchHHHHHHHHHHHHccchhheeeeEeCCcHHHHHH
Confidence            4455544555666678999999986  566664433

>TIGR00739 yajC preprotein translocase, YajC subunit

Probab=82.10  E-value=2.1  Score=26.93  Aligned_cols=29  Identities=17%  Similarity=0.415  Sum_probs=20.6

Q ss_pred             hHHHHHHhhhhhheeeecCchhhHHHHHH
Q 035274           28 NLASWVVAGTLAYYLWVKPSQDLKREQEV   56 (69)
Q Consensus        28 nlAaW~VAG~lAYylwvkPe~~~~~eqe~   56 (69)
                      .+.-.++...+-|||.++|.+.+++++++
T Consensus         5 ~l~~~vv~~~i~yf~~~rpqkK~~k~~~~   33 (84)
T TIGR00739         5 TLLPLVLIFLIFYFLIIRPQRKRRKAHKK   33 (84)
T ss_pred             HHHHHHHHHHHHHHheechHHHHHHHHHH
Confidence            34455666778899999998776666543

While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.

>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases

Probab=81.78  E-value=0.3  Score=33.50  Aligned_cols=12  Identities=50%  Similarity=1.060  Sum_probs=10.3

Q ss_pred             hhhhhcccccCC
Q 035274           14 SFVGNSMGGVRG   25 (69)
Q Consensus        14 sfi~nsmgG~RG   25 (69)
                      ||||.||||+--
T Consensus        81 sfIgHSLGGli~   92 (217)
T PF05057_consen   81 SFIGHSLGGLIA   92 (217)
T ss_pred             eEEEecccHHHH
Confidence            899999999743

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	69
2rdd_B	37	UPF0092 membrane protein YAJC; drug resistance, mu	90.1

>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}

Probab=90.10  E-value=0.06  Score=28.76  Aligned_cols=30  Identities=23%  Similarity=0.470  Sum_probs=22.2

Q ss_pred             hhHHHHHHhhhhhheeeecCchhhHHHHHH
Q 035274           27 ANLASWVVAGTLAYYLWVKPSQDLKREQEV   56 (69)
Q Consensus        27 ~nlAaW~VAG~lAYylwvkPe~~~~~eqe~   56 (69)
                      ..+.-.++-.++-||+.++|.+.+++|+++
T Consensus         4 ~~~l~~v~~~~ifYFl~iRPQ~Kr~K~~~~   33 (37)
T 2rdd_B            4 SLILMLVVFGLIFYFMILRPQQKRTKEHKK   33 (37)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            456666777788899999998777666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00