Citrus Sinensis ID: 035311

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------
Protein Sequence
MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIGTTPEQCAGFPEITQSCWIDLMRSLRKQLHLL
Secondary Structure (PSIPRED)
ccHHHHHHHHccccccccccHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHcccccccccccHHHHHHHHHHHHHccEEEccccccccccccHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mteedfirsnghinggndlpREFLSKLYHSICkneigttpeqcagfpeiTQSCWIDLMRSLRKQLHLL
Flexible Loop (DISEMBL)
mteedfirsnghinggndlPREFLSKLYHSICKNEIGTTPEQCAGFPEITQSCWIDLMRSLRKQLHLL
Low Complexity Region (SEG)
MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIGTTPEQCAGFPEITQSCWIDLMRSLRKQLHLL
Disordered region (IsUnstruct)
*****************DLPREFLSKLYHSICKNEIGTTPEQCAGFPEITQSCWIDLMRSL*******
Disordered Region (DISOPRED)
*TEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIG***************CWIDLMRSLR***HLL
Disordered Region (DISEMBL)
********SNGHINGGNDLPREFLSKLYHSICKNEIGTTPEQCAGFPEITQSCWIDLMRSLRKQLHLL
Disordered Region (DISPRO)
*TEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIGTTPEQCAGFPEITQSCWIDLMRSLRKQ****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIGTTPEQCAGFPEITQSCWIDLMRSLRKQLHLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	68	2.2.26 [Sep-21-2011]
Q42510	1451	ARF guanine-nucleotide ex	yes	no	0.926	0.043	0.777	5e-24
Q9FLY5	1443	ARF guanine-nucleotide ex	no	no	0.852	0.040	0.551	8e-12
F4K2K3	1375	ARF guanine-nucleotide ex	no	no	0.823	0.040	0.465	6e-08
F4JSZ5	1687	Brefeldin A-inhibited gua	no	no	0.970	0.039	0.397	2e-05
Q9LPC5	1750	Brefeldin A-inhibited gua	no	no	0.617	0.024	0.468	0.0002
Q54KA7	986	Ankyrin repeat, PH and SE	yes	no	0.529	0.036	0.5	0.0003
F4JN05	1706	Brefeldin A-inhibited gua	no	no	0.529	0.021	0.5	0.0004
Q9P7V5	1822	Protein transport protein	yes	no	0.617	0.023	0.476	0.0006
Q9UT02	1811	Protein transport protein	no	no	0.720	0.027	0.431	0.0007

>sp|Q42510|GNOM_ARATH ARF guanine-nucleotide exchange factor GNOM OS=Arabidopsis thaliana GN=GN PE=1 SV=1

 Score =  109 bits (272), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 49/63 (77%), Positives = 54/63 (85%)

Query: 1   MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIGTTPEQCAGFPEITQSCWIDLMRS 60
           MTEEDFIR+N HINGGNDLPREFLS+L+HSIC NEI TTPEQ AGFPE+T S WIDLM  
Sbjct: 710 MTEEDFIRNNRHINGGNDLPREFLSELFHSICNNEIRTTPEQGAGFPEMTPSRWIDLMHK 769

Query: 61  LRK 63
            +K
Sbjct: 770 SKK 772

May perform a function that affects cell expansion, the orientation of the plane of cell division, the number of cell divisions, and cell adhesion throughout plant development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLY5|GNL1_ARATH ARF guanine-nucleotide exchange factor GNL1 OS=Arabidopsis thaliana GN=GNL1 PE=3 SV=1

 Score = 68.9 bits (167), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 42/58 (72%)

Query: 1   MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIGTTPEQCAGFPEITQSCWIDLM 58
           MTEEDFIR+N  INGG DLPRE+LS++YHSI  +EI    ++  GF  +T S WI ++
Sbjct: 710 MTEEDFIRNNRTINGGADLPREYLSEIYHSIRHSEIQMDEDKGTGFQLMTASRWISVI 767

Activates the ARF proteins by exchanging bound GDP for free GTP. Plays a role in vesicular protein sorting. Acts as the major regulator of retrograde Golgi to endoplasmic reticulum trafficking but is also involved in the endocytosis process. Could function redundantly with GNOM. Regulates vesicle trafficking required for the coordinated polar localization of auxin efflux carriers which in turn determines the direction of auxin flow. Mediates the endocytosis of PIN2 from plasma membrane to endosomal compartments. Required for maintenance of endoplasmic reticulum morphology.

Arabidopsis thaliana (taxid: 3702)

>sp|F4K2K3|GNL2_ARATH ARF guanine-nucleotide exchange factor GNL2 OS=Arabidopsis thaliana GN=GNL2 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 39/58 (67%), Gaps = 2/58 (3%)

Query: 1   MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIGTTPEQCAGFPEITQSCWIDLM 58
           MTE++FIR+N  IN GNDLP+E+LS+L+ SI  N    +    +G  E+  + WI+LM
Sbjct: 643 MTEDEFIRNNRAINAGNDLPKEYLSELFQSIATNAFALSTH--SGPVEMNPNRWIELM 698

Activates the ARF proteins by exchanging bound GDP for free GTP. Plays a role in vesicular protein sorting. Essential for pollen germination.

Arabidopsis thaliana (taxid: 3702)

>sp|F4JSZ5|BIG1_ARATH Brefeldin A-inhibited guanine nucleotide-exchange protein 1 OS=Arabidopsis thaliana GN=BIG1 PE=2 SV=1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 2/68 (2%)

Query: 1   MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIGTTPEQCAGFPEITQSCWIDLMRS 60
           MT+ DFIR+N  I+ G DLP E+L  LY  +  NEI  + +  A  PE  QS  ++ +  
Sbjct: 686 MTKADFIRNNRGIDDGKDLPEEYLGALYDQVVINEIKMSSDSSA--PESRQSNGLNKLLG 743

Query: 61  LRKQLHLL 68
           L   L+L+
Sbjct: 744 LDGILNLV 751

Activates the ARF proteins by exchanging bound GDP for free GTP. Plays a role in vesicular protein sorting.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LPC5|BIG3_ARATH Brefeldin A-inhibited guanine nucleotide-exchange protein 3 OS=Arabidopsis thaliana GN=BIG3 PE=1 SV=1

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 5/47 (10%)

Query: 1   MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEI-----GTTPEQ 42
           MT + FIR+N  I+ G DLP E+L  LY  I +NEI     G  P+Q
Sbjct: 755 MTADGFIRNNRGIDDGKDLPEEYLRALYERISRNEIKMKDDGLGPQQ 801

Activates the ARF proteins by exchanging bound GDP for free GTP. Plays a role in vesicular protein sorting (By similarity). Involved both in the nuclear division phase and in the nuclear fusion phase.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54KA7|SECG_DICDI Ankyrin repeat, PH and SEC7 domain containing protein secG OS=Dictyostelium discoideum GN=secG PE=2 SV=1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/36 (50%), Positives = 25/36 (69%)

Query: 1   MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEI 36
           MT+ +F+R+N  IN G+DLP +F+  LY  I  NEI
Sbjct: 737 MTKAEFLRNNSGINSGDDLPPDFMENLYDKIVTNEI 772

Dictyostelium discoideum (taxid: 44689)

>sp|F4JN05|BIG4_ARATH Brefeldin A-inhibited guanine nucleotide-exchange protein 4 OS=Arabidopsis thaliana GN=BIG4 PE=2 SV=1

 Score = 43.1 bits (100), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/36 (50%), Positives = 24/36 (66%)

Query: 1   MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEI 36
           MT+ DF+R+N  I+ G DLP E+L  LY  + K EI
Sbjct: 709 MTKADFVRNNRGIDDGKDLPEEYLGSLYDRVVKEEI 744

Activates the ARF proteins by exchanging bound GDP for free GTP. Plays a role in vesicular protein sorting.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9P7V5|SEC7B_SCHPO Protein transport protein sec72 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sec72 PE=1 SV=1

 Score = 42.7 bits (99), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/42 (47%), Positives = 27/42 (64%)

Query: 1   MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIGTTPEQ 42
           MT+EDFI++N  IN G DL  ++L  +Y  I KNEI    +Q
Sbjct: 856 MTKEDFIKNNRGINDGADLDEDYLGFVYDDILKNEIAMKDDQ 897

May play a role in protein transport.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9UT02|SEC7A_SCHPO Protein transport protein sec71 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sec71 PE=1 SV=1

 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 2/51 (3%)

Query: 1   MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIGTTPEQ--CAGFPEI 49
           MT +DFI++N  ++ G +L   FL+++Y  I KNEI    EQ   + FPEI
Sbjct: 847 MTCQDFIKNNRGVDDGANLSDSFLTEVYEEIQKNEIVLKDEQDPTSNFPEI 897

May play a role in protein transport.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	68
297742064	1264	unnamed protein product [Vitis vinifera]	0.926	0.049	0.793	5e-23
225427145	1470	PREDICTED: pattern formation protein EMB	0.926	0.042	0.793	7e-23
255562960	1470	pattern formation protein, putative [Ric	0.926	0.042	0.793	7e-23
297844304	1454	hypothetical protein ARALYDRAFT_471559 [	0.926	0.043	0.777	2e-22
1209631	1451	GNOM [Arabidopsis thaliana]	0.926	0.043	0.777	2e-22
15220948	1451	Pattern formation protein EMB30 [Arabido	0.926	0.043	0.777	2e-22
62319013	1289	putative pattern formation protein EMB30	0.926	0.048	0.777	2e-22
147780347	1433	hypothetical protein VITISV_034390 [Viti	0.926	0.043	0.777	3e-22
449511321	1233	PREDICTED: pattern formation protein EMB	0.926	0.051	0.761	1e-21
356537942	1292	PREDICTED: pattern formation protein EMB	0.926	0.048	0.746	2e-21

>gi|297742064|emb|CBI33851.3| unnamed protein product [Vitis vinifera]

 Score =  111 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 50/63 (79%), Positives = 55/63 (87%)

Query: 1   MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIGTTPEQCAGFPEITQSCWIDLMRS 60
           MTEEDFIR+N HINGGNDLPR+FLS+LYHSICKNEI TTPEQ AGFPE+T S WIDLM  
Sbjct: 664 MTEEDFIRNNRHINGGNDLPRDFLSELYHSICKNEIRTTPEQGAGFPEMTPSRWIDLMHK 723

Query: 61  LRK 63
            +K
Sbjct: 724 SKK 726

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427145|ref|XP_002279665.1| PREDICTED: pattern formation protein EMB30-like [Vitis vinifera]

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 50/63 (79%), Positives = 55/63 (87%)

Query: 1   MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIGTTPEQCAGFPEITQSCWIDLMRS 60
           MTEEDFIR+N HINGGNDLPR+FLS+LYHSICKNEI TTPEQ AGFPE+T S WIDLM  
Sbjct: 714 MTEEDFIRNNRHINGGNDLPRDFLSELYHSICKNEIRTTPEQGAGFPEMTPSRWIDLMHK 773

Query: 61  LRK 63
            +K
Sbjct: 774 SKK 776

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562960|ref|XP_002522485.1| pattern formation protein, putative [Ricinus communis] gi|223538370|gb|EEF39977.1| pattern formation protein, putative [Ricinus communis]

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 50/63 (79%), Positives = 55/63 (87%)

Query: 1   MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIGTTPEQCAGFPEITQSCWIDLMRS 60
           MTEEDFIR+N HINGGNDLPREFLS+LYHSIC+NEI TTPEQ AGFPE+T S WIDLM  
Sbjct: 713 MTEEDFIRNNRHINGGNDLPREFLSELYHSICRNEIRTTPEQGAGFPEMTPSRWIDLMLK 772

Query: 61  LRK 63
            +K
Sbjct: 773 SKK 775

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844304|ref|XP_002890033.1| hypothetical protein ARALYDRAFT_471559 [Arabidopsis lyrata subsp. lyrata] gi|297335875|gb|EFH66292.1| hypothetical protein ARALYDRAFT_471559 [Arabidopsis lyrata subsp. lyrata]

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/63 (77%), Positives = 54/63 (85%)

Query: 1   MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIGTTPEQCAGFPEITQSCWIDLMRS 60
           MTEEDFIR+N HINGGNDLPREFLS+L+HSIC NEI TTPEQ AGFPE+T S WIDLM  
Sbjct: 710 MTEEDFIRNNRHINGGNDLPREFLSELFHSICNNEIRTTPEQGAGFPEMTPSRWIDLMHK 769

Query: 61  LRK 63
            +K
Sbjct: 770 SKK 772

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1209631|gb|AAA91150.1| GNOM [Arabidopsis thaliana]

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/63 (77%), Positives = 54/63 (85%)

Query: 1   MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIGTTPEQCAGFPEITQSCWIDLMRS 60
           MTEEDFIR+N HINGGNDLPREFLS+L+HSIC NEI TTPEQ AGFPE+T S WIDLM  
Sbjct: 710 MTEEDFIRNNRHINGGNDLPREFLSELFHSICNNEIRTTPEQGAGFPEMTPSRWIDLMHK 769

Query: 61  LRK 63
            +K
Sbjct: 770 SKK 772

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15220948|ref|NP_172851.1| Pattern formation protein EMB30 [Arabidopsis thaliana] gi|334182567|ref|NP_001184991.1| Pattern formation protein EMB30 [Arabidopsis thaliana] gi|2498329|sp|Q42510.1|GNOM_ARATH RecName: Full=ARF guanine-nucleotide exchange factor GNOM; AltName: Full=Pattern formation protein EMB30; AltName: Full=Protein EMBRYO DEFECTIVE 30; AltName: Full=Protein MIZU-KUSSEI2; AltName: Full=Protein VASCULAR NETWORK 7 gi|5080774|gb|AAD39284.1|AC007576_7 EMB30/GNOM gene product [Arabidopsis thaliana] gi|8778395|gb|AAF79403.1|AC068197_13 F16A14.20 [Arabidopsis thaliana] gi|1209633|gb|AAA91151.1| GNOM [Arabidopsis thaliana] gi|1335997|gb|AAB01205.1| similar to the Saccharomyces cerevisiae Sec7 protein, GenBank Accession Number J03918 [Arabidopsis thaliana] gi|1335999|gb|AAB01206.1| similar to the Saccharomyces cerevisiae Sec7 protein, GenBank Accession Number J03918 [Arabidopsis thaliana] gi|332190971|gb|AEE29092.1| Pattern formation protein EMB30 [Arabidopsis thaliana] gi|332190972|gb|AEE29093.1| Pattern formation protein EMB30 [Arabidopsis thaliana]

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/63 (77%), Positives = 54/63 (85%)

Query: 1   MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIGTTPEQCAGFPEITQSCWIDLMRS 60
           MTEEDFIR+N HINGGNDLPREFLS+L+HSIC NEI TTPEQ AGFPE+T S WIDLM  
Sbjct: 710 MTEEDFIRNNRHINGGNDLPREFLSELFHSICNNEIRTTPEQGAGFPEMTPSRWIDLMHK 769

Query: 61  LRK 63
            +K
Sbjct: 770 SKK 772

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|62319013|dbj|BAD94131.1| putative pattern formation protein EMB30 [Arabidopsis thaliana]

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/63 (77%), Positives = 54/63 (85%)

Query: 1   MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIGTTPEQCAGFPEITQSCWIDLMRS 60
           MTEEDFIR+N HINGGNDLPREFLS+L+HSIC NEI TTPEQ AGFPE+T S WIDLM  
Sbjct: 548 MTEEDFIRNNRHINGGNDLPREFLSELFHSICNNEIRTTPEQGAGFPEMTPSRWIDLMHK 607

Query: 61  LRK 63
            +K
Sbjct: 608 SKK 610

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147780347|emb|CAN61434.1| hypothetical protein VITISV_034390 [Vitis vinifera]

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 49/63 (77%), Positives = 55/63 (87%)

Query: 1   MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIGTTPEQCAGFPEITQSCWIDLMRS 60
           MTEEDFIR+N HINGG+DLPR+FLS+LYHSICKNEI TTPEQ AGFPE+T S WIDLM  
Sbjct: 714 MTEEDFIRNNRHINGGSDLPRDFLSELYHSICKNEIRTTPEQGAGFPEMTPSRWIDLMHK 773

Query: 61  LRK 63
            +K
Sbjct: 774 SKK 776

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449511321|ref|XP_004163924.1| PREDICTED: pattern formation protein EMB30-like [Cucumis sativus]

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/63 (76%), Positives = 54/63 (85%)

Query: 1   MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIGTTPEQCAGFPEITQSCWIDLMRS 60
           MTEEDFIR++ HINGGNDLPR+FLS+LYHSICKNEI TTPEQ  GFPE+T S WIDLM  
Sbjct: 478 MTEEDFIRNSRHINGGNDLPRDFLSELYHSICKNEIRTTPEQGNGFPEMTPSRWIDLMHK 537

Query: 61  LRK 63
            +K
Sbjct: 538 SKK 540

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537942|ref|XP_003537465.1| PREDICTED: pattern formation protein EMB30-like [Glycine max]

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/63 (74%), Positives = 53/63 (84%)

Query: 1   MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIGTTPEQCAGFPEITQSCWIDLMRS 60
           MTEEDFIR+N HINGGNDLPRE L+++YHSICKNEI TTPEQ  GFPE+T S WIDLM  
Sbjct: 716 MTEEDFIRNNRHINGGNDLPREMLTEIYHSICKNEIRTTPEQGVGFPEMTPSRWIDLMHK 775

Query: 61  LRK 63
            +K
Sbjct: 776 SKK 778

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	68
TAIR|locus:2035853	1451	GN "AT1G13980" [Arabidopsis th	0.926	0.043	0.777	4.2e-21
UNIPROTKB|Q75H95	1175	OSJNBa0056E06.17 "Pattern form	0.867	0.050	0.711	3.5e-17
UNIPROTKB|Q0E1L7	996	Os02g0326600 "Os02g0326600 pro	0.985	0.067	0.632	9.6e-17
TAIR|locus:2175728	1443	GNL1 "AT5G39500" [Arabidopsis	0.852	0.040	0.551	3e-10
TAIR|locus:2183159	1375	GNL2 "AT5G19610" [Arabidopsis	0.823	0.040	0.465	2.7e-07
UNIPROTKB|Q10P53	1789	Os03g0246800 "Sec7 domain cont	0.617	0.023	0.5	0.00018
CGD|CAL0003353	1839	SEC7 [Candida albicans (taxid:	0.647	0.023	0.522	0.00028
UNIPROTKB|Q5ANF9	1839	SEC7 "Likely GTP/GDP exchange	0.647	0.023	0.522	0.00028
TAIR|locus:2122143	1706	AT4G35380 "AT4G35380" [Arabido	0.529	0.021	0.5	0.00034
DICTYBASE|DDB_G0287459	986	secG "Arf guanyl-nucleotide ex	0.529	0.036	0.5	0.00061

TAIR|locus:2035853 GN "AT1G13980" [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 4.2e-21, P = 4.2e-21
 Identities = 49/63 (77%), Positives = 54/63 (85%)

Query:     1 MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIGTTPEQCAGFPEITQSCWIDLMRS 60
             MTEEDFIR+N HINGGNDLPREFLS+L+HSIC NEI TTPEQ AGFPE+T S WIDLM  
Sbjct:   710 MTEEDFIRNNRHINGGNDLPREFLSELFHSICNNEIRTTPEQGAGFPEMTPSRWIDLMHK 769

Query:    61 LRK 63
              +K
Sbjct:   770 SKK 772

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IDA;IBA

GO:0005737 "cytoplasm" evidence=ISM;IBA

GO:0050790 "regulation of catalytic activity" evidence=IBA

GO:0010292 "GTP:GDP antiporter activity" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0010087 "phloem or xylem histogenesis" evidence=IMP

GO:0007155 "cell adhesion" evidence=RCA;IMP

GO:0071555 "cell wall organization" evidence=RCA;IMP

GO:0005768 "endosome" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IMP

GO:0032509 "endosome transport via multivesicular body sorting pathway" evidence=IMP

GO:0048209 "regulation of vesicle targeting, to, from or within Golgi" evidence=TAS

GO:0001736 "establishment of planar polarity" evidence=IGI

GO:0048765 "root hair cell differentiation" evidence=IGI;RCA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0010311 "lateral root formation" evidence=IMP

GO:0010540 "basipetal auxin transport" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0006897 "endocytosis" evidence=IMP

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=IMP;RCA

GO:0003002 "regionalization" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;RCA

GO:0009880 "embryonic pattern specification" evidence=IMP;RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009888 "tissue development" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010072 "primary shoot apical meristem specification" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010431 "seed maturation" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0010638 "positive regulation of organelle organization" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0033043 "regulation of organelle organization" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0045595 "regulation of cell differentiation" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

GO:0048589 "developmental growth" evidence=RCA

GO:0051049 "regulation of transport" evidence=RCA

GO:0051301 "cell division" evidence=RCA

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0009942 "longitudinal axis specification" evidence=IMP

UNIPROTKB|Q75H95 OSJNBa0056E06.17 "Pattern formation protein EMB30, putative, expressed" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 224 (83.9 bits), Expect = 3.5e-17, P = 3.5e-17
 Identities = 42/59 (71%), Positives = 51/59 (86%)

Query:     1 MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIGTTPEQCAGFPEITQSCWIDLMR 59
             MTEEDFI++N +INGG+DLPRE LS+LYHSIC+NEI TTPEQ  G+ E++ S WIDLMR
Sbjct:   438 MTEEDFIKNNRNINGGSDLPREMLSELYHSICRNEIKTTPEQGMGYFEMSPSRWIDLMR 496

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IBA

GO:0005802 "trans-Golgi network" evidence=IBA

GO:0016192 "vesicle-mediated transport" evidence=IBA

UNIPROTKB|Q0E1L7 Os02g0326600 "Os02g0326600 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 219 (82.2 bits), Expect = 9.6e-17, P = 9.6e-17
 Identities = 43/68 (63%), Positives = 54/68 (79%)

Query:     1 MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIGTTPEQCAGFPEITQSCWIDLM-R 59
             MTEEDFI++N  INGGNDLPREFLS+LY+SIC+NEI T PEQ AG  E++ S W+DLM +
Sbjct:   259 MTEEDFIKNNRRINGGNDLPREFLSELYYSICRNEIRTIPEQGAGCSEMSFSRWVDLMWK 318

Query:    60 SLRKQLHL 67
             S R   ++
Sbjct:   319 SKRTSAYI 326

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IBA

GO:0005802 "trans-Golgi network" evidence=IBA

GO:0016192 "vesicle-mediated transport" evidence=IBA

TAIR|locus:2175728 GNL1 "AT5G39500" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 3.0e-10, P = 3.0e-10
 Identities = 32/58 (55%), Positives = 42/58 (72%)

Query:     1 MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIGTTPEQCAGFPEITQSCWIDLM 58
             MTEEDFIR+N  INGG DLPRE+LS++YHSI  +EI    ++  GF  +T S WI ++
Sbjct:   710 MTEEDFIRNNRTINGGADLPREYLSEIYHSIRHSEIQMDEDKGTGFQLMTASRWISVI 767

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IEA;IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0009507 "chloroplast" evidence=ISM

GO:0050790 "regulation of catalytic activity" evidence=IBA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IMP

GO:0006897 "endocytosis" evidence=IMP

GO:0080119 "ER body organization" evidence=IMP

TAIR|locus:2183159 GNL2 "AT5G19610" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 2.7e-07, P = 2.7e-07
 Identities = 27/58 (46%), Positives = 39/58 (67%)

Query:     1 MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIGTTPEQCAGFPEITQSCWIDLM 58
             MTE++FIR+N  IN GNDLP+E+LS+L+ SI  N    +    +G  E+  + WI+LM
Sbjct:   643 MTEDEFIRNNRAINAGNDLPKEYLSELFQSIATNAFALSTH--SGPVEMNPNRWIELM 698

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IEA;ISS;IBA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IBA

GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA

GO:0050790 "regulation of catalytic activity" evidence=IBA

GO:0009846 "pollen germination" evidence=IMP

GO:0090406 "pollen tube" evidence=IDA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

UNIPROTKB|Q10P53 Os03g0246800 "Sec7 domain containing protein, expressed" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 101 (40.6 bits), Expect = 0.00018, Sum P(2) = 0.00018
 Identities = 21/42 (50%), Positives = 26/42 (61%)

Query:     1 MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIGTTPEQ 42
             M+ EDFIR+N  I+ G DLP EF+  LY  I K EI    E+
Sbjct:   785 MSPEDFIRNNRGIDDGKDLPEEFMRSLYERIWKKEIKMKEEE 826

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IBA

GO:0005802 "trans-Golgi network" evidence=IBA

GO:0005829 "cytosol" evidence=IBA

GO:0016192 "vesicle-mediated transport" evidence=IBA

CGD|CAL0003353 SEC7 [Candida albicans (taxid:5476)]

 Score = 105 (42.0 bits), Expect = 0.00028, P = 0.00028
 Identities = 23/44 (52%), Positives = 27/44 (61%)

Query:     1 MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIGTTPEQCA 44
             MT + FI +N  I+ G DLPREFL K+Y  I  NEI    EQ A
Sbjct:   865 MTIDSFIMNNSGIDDGEDLPREFLEKIYDEIQNNEIKLQSEQHA 908

GO:0035690 "cellular response to drug" evidence=IMP

GO:0000138 "Golgi trans cisterna" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005798 "Golgi-associated vesicle" evidence=IEA

GO:0000137 "Golgi cis cisterna" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IEA

GO:0000045 "autophagic vacuole assembly" evidence=IEA

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IEA

UNIPROTKB|Q5ANF9 SEC7 "Likely GTP/GDP exchange factor for ARF" [Candida albicans SC5314 (taxid:237561)]

 Score = 105 (42.0 bits), Expect = 0.00028, P = 0.00028
 Identities = 23/44 (52%), Positives = 27/44 (61%)

Query:     1 MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIGTTPEQCA 44
             MT + FI +N  I+ G DLPREFL K+Y  I  NEI    EQ A
Sbjct:   865 MTIDSFIMNNSGIDDGEDLPREFLEKIYDEIQNNEIKLQSEQHA 908

GO:0035690 "cellular response to drug" evidence=IMP

TAIR|locus:2122143 AT4G35380 "AT4G35380" [Arabidopsis thaliana (taxid:3702)]

 Score = 97 (39.2 bits), Expect = 0.00034, Sum P(2) = 0.00034
 Identities = 18/36 (50%), Positives = 24/36 (66%)

Query:     1 MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEI 36
             MT+ DF+R+N  I+ G DLP E+L  LY  + K EI
Sbjct:   709 MTKADFVRNNRGIDDGKDLPEEYLGSLYDRVVKEEI 744

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=ISS

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IEA;IBA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=IBA

GO:0016192 "vesicle-mediated transport" evidence=IBA

GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA

GO:0050790 "regulation of catalytic activity" evidence=IBA

GO:0000041 "transition metal ion transport" evidence=RCA

DICTYBASE|DDB_G0287459 secG "Arf guanyl-nucleotide exchange factor" [Dictyostelium discoideum (taxid:44689)]

 Score = 99 (39.9 bits), Expect = 0.00061, P = 0.00061
 Identities = 18/36 (50%), Positives = 25/36 (69%)

Query:     1 MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEI 36
             MT+ +F+R+N  IN G+DLP +F+  LY  I  NEI
Sbjct:   737 MTKAEFLRNNSGINSGDDLPPDFMENLYDKIVTNEI 772

GO:0031589 "cell-substrate adhesion" evidence=IMP

GO:0006935 "chemotaxis" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0005764 "lysosome" evidence=IDA

GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q42510	GNOM_ARATH	No assigned EC number	0.7777	0.9264	0.0434	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	68
smart00222	189	smart00222, Sec7, Sec7 domain	2e-12
cd00171	185	cd00171, Sec7, Sec7 domain; Domain named after the	4e-12
PLN03076	1780	PLN03076, PLN03076, ARF guanine nucleotide exchang	7e-10
pfam01369	188	pfam01369, Sec7, Sec7 domain	2e-09
COG5307	1024	COG5307, COG5307, SEC7 domain proteins [General fu	3e-06

>gnl|CDD|214569 smart00222, Sec7, Sec7 domain

 Score = 58.1 bits (141), Expect = 2e-12
 Identities = 22/36 (61%), Positives = 25/36 (69%)

Query: 1   MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEI 36
           MT EDFI++    N G DLPREFL +LY SI  NEI
Sbjct: 154 MTLEDFIKNVRGSNDGEDLPREFLEELYDSIKNNEI 189

Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors). Length = 189

>gnl|CDD|238100 cd00171, Sec7, Sec7 domain; Domain named after the S

 Score = 57.2 bits (139), Expect = 4e-12
 Identities = 22/36 (61%), Positives = 25/36 (69%)

Query: 1   MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEI 36
           MT EDFI++   IN G D PREFL +LY SI  NEI
Sbjct: 150 MTLEDFIKNLRGINDGEDFPREFLKELYDSIKNNEI 185

cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity. Length = 185

>gnl|CDD|215560 PLN03076, PLN03076, ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

 Score = 52.1 bits (125), Expect = 7e-10
 Identities = 20/36 (55%), Positives = 25/36 (69%)

Query: 1   MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEI 36
           M+ +DFIR+N  I+ G DLP EF+  LY  I KNEI
Sbjct: 763 MSADDFIRNNRGIDDGKDLPEEFMRSLYERISKNEI 798

Length = 1780

>gnl|CDD|216460 pfam01369, Sec7, Sec7 domain

 Score = 49.9 bits (120), Expect = 2e-09
 Identities = 19/36 (52%), Positives = 24/36 (66%)

Query: 1   MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEI 36
           MT+EDFI++   IN G D P EFL ++Y SI   EI
Sbjct: 153 MTKEDFIKNLRGINDGKDFPEEFLEEIYDSIKSEEI 188

The Sec7 domain is a guanine-nucleotide-exchange-factor (GEF) for the pfam00025 family. Length = 188

>gnl|CDD|227623 COG5307, COG5307, SEC7 domain proteins [General function prediction only]

 Score = 42.0 bits (99), Expect = 3e-06
 Identities = 17/36 (47%), Positives = 21/36 (58%)

Query: 1   MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEI 36
           MT EDF ++    N G D P EFL + Y +I K EI
Sbjct: 417 MTFEDFSKNLRGENTGRDFPEEFLEEFYDNIKKKEI 452

Length = 1024

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	68
KOG0928	1386	consensus Pattern-formation protein/guanine nucleo	99.81
KOG0930	395	consensus Guanine nucleotide exchange factor Cytoh	99.4
KOG0931	627	consensus Predicted guanine nucleotide exchange fa	99.35
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	99.32
KOG0929	1514	consensus Guanine nucleotide exchange factor [Intr	99.15
cd00171	185	Sec7 Sec7 domain; Domain named after the S. cerevi	99.1
smart00222	187	Sec7 Sec7 domain. Domain named after the S. cerevi	99.09
COG5307	1024	SEC7 domain proteins [General function prediction	99.09
PF01369	190	Sec7: Sec7 domain; InterPro: IPR000904 The SEC7 do	99.07
KOG0932	774	consensus Guanine nucleotide exchange factor EFA6	98.86

>KOG0928 consensus Pattern-formation protein/guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=2.4e-20  Score=152.46  Aligned_cols=67  Identities=42%  Similarity=0.688  Sum_probs=63.9

Q ss_pred             CChHHHHHHhcCCCCCCCCCHHHHHHHHHHHhcCCcccCCCCcCCCCccchHHHHHHHHHHHhhccCC
Q 035311            1 MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIGTTPEQCAGFPEITQSCWIDLMRSLRKQLHLL   68 (68)
Q Consensus         1 Mt~e~FirnnrGin~G~Dlp~e~L~~iY~sI~~~ei~~~~~~~~~~~~~~~~~W~~l~~~~~~~~~~~   68 (68)
                      ||++||+||+||+|+|+|||++||.+||++||.+||.||+++ +++.+++.++|..|+.|+++|.|++
T Consensus       662 MT~dDf~rNlrg~n~g~DFpreyLseiY~SIk~~EIvmPee~-hG~~~~~~~~W~~L~~~sktt~~~~  728 (1386)
T KOG0928|consen  662 MTFDDFIRNLRGINGGKDFPREYLSEIYQSIKTNEIVMPEEH-HGTEEMFEYRWINLISRSKTTEPFI  728 (1386)
T ss_pred             CCHHHHhhhcccccCCCCCCHHHHHHHHHHHhhcceeccccc-CCchhhhHHHHHHHHhcccccCcee
Confidence            999999999999999999999999999999999999998887 4889999999999999999998874

>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.40  E-value=1.9e-13  Score=100.21  Aligned_cols=57  Identities=33%  Similarity=0.496  Sum_probs=52.7

Q ss_pred             ChHHHHHHhcCCCCCCCCCHHHHHHHHHHHhcCCcccCCCCc----CCCCccchHHHHHHH
Q 035311            2 TEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIGTTPEQC----AGFPEITQSCWIDLM   58 (68)
Q Consensus         2 t~e~FirnnrGin~G~Dlp~e~L~~iY~sI~~~ei~~~~~~~----~~~~~~~~~~W~~l~   58 (68)
                      ++|.||.||||||+|+|+|.|+|.++|+||+++++++|++.+    +.|-++++.||+.-+
T Consensus       209 ~lErfi~MNrgineggdlpee~LrnlyeSi~~epFkIPeddgndlthtffnpdREGWLlKl  269 (395)
T KOG0930|consen  209 TLERFIAMNRGINEGGDLPEELLRNLYESIKNEPFKIPEDDGNDLTHTFFNPDREGWLLKL  269 (395)
T ss_pred             cHHHHHHHhhccccCCCCcHHHHHHHHHHhcCCCCCCCcccCCcchhhccCccccceeeee
Confidence            689999999999999999999999999999999999999876    458899999998655

>KOG0931 consensus Predicted guanine nucleotide exchange factor, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.35  E-value=5e-13  Score=102.48  Aligned_cols=43  Identities=37%  Similarity=0.675  Sum_probs=42.0

Q ss_pred             CChHHHHHHhcCCCCCCCCCHHHHHHHHHHHhcCCcccCCCCc
Q 035311            1 MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIGTTPEQC   43 (68)
Q Consensus         1 Mt~e~FirnnrGin~G~Dlp~e~L~~iY~sI~~~ei~~~~~~~   43 (68)
                      |+++|||+|+||+++|.|+|+++|.+||++|+++|++..+||.
T Consensus       350 M~leDFikNLRGvDnGeDIpRell~GIYeRIqk~ELktndDHV  392 (627)
T KOG0931|consen  350 MKLEDFIKNLRGVDNGEDIPRELLVGIYERIQKRELKTNDDHV  392 (627)
T ss_pred             hhHHHHHHhccCCCCcccCcHHHHHHHHHHHHHhhcccCcchH
Confidence            8999999999999999999999999999999999999999985

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=99.32  E-value=1.5e-12  Score=109.77  Aligned_cols=43  Identities=47%  Similarity=0.818  Sum_probs=41.6

Q ss_pred             CChHHHHHHhcCCCCCCCCCHHHHHHHHHHHhcCCcccCCCCc
Q 035311            1 MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIGTTPEQC   43 (68)
Q Consensus         1 Mt~e~FirnnrGin~G~Dlp~e~L~~iY~sI~~~ei~~~~~~~   43 (68)
                      ||+++|++||||||+|+|||++||++||++|+++||++++++.
T Consensus       763 Mt~~~Fi~n~rgin~g~dlp~e~L~~iY~~I~~~ei~~~~~~~  805 (1780)
T PLN03076        763 MSADDFIRNNRGIDDGKDLPEEFMRSLYERISKNEIKMKEDDL  805 (1780)
T ss_pred             CCHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHhCcccCccccc
Confidence            9999999999999999999999999999999999999999864

>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.15  E-value=2.8e-11  Score=100.97  Aligned_cols=43  Identities=47%  Similarity=0.737  Sum_probs=41.7

Q ss_pred             CChHHHHHHhcCCCCCCCCCHHHHHHHHHHHhcCCcccCCCCc
Q 035311            1 MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIGTTPEQC   43 (68)
Q Consensus         1 Mt~e~FirnnrGin~G~Dlp~e~L~~iY~sI~~~ei~~~~~~~   43 (68)
                      ||+++||+||||||+|+|+|.+||+.+|+.|..+||+|.++..
T Consensus       662 MTK~dFI~nnrgind~~dlp~e~L~~lYd~I~~~Eikm~~~~~  704 (1514)
T KOG0929|consen  662 MTKADFIRNNRGINDGKDLPEEYLEALYDEIEYKEIKMKSDSL  704 (1514)
T ss_pred             ccHHHHHHhcccccCcccChHHHHHHHHHHhhhcccccccccc
Confidence            9999999999999999999999999999999999999998875

>cd00171 Sec7 Sec7 domain; Domain named after the S

Probab=99.10  E-value=1.1e-10  Score=78.94  Aligned_cols=36  Identities=61%  Similarity=0.922  Sum_probs=35.3

Q ss_pred             CChHHHHHHhcCCCCCCCCCHHHHHHHHHHHhcCCc
Q 035311            1 MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEI   36 (68)
Q Consensus         1 Mt~e~FirnnrGin~G~Dlp~e~L~~iY~sI~~~ei   36 (68)
                      ||+++|++|++|+++|.+||.++|++||++|+++||
T Consensus       150 mt~~~Fi~~~~~~~~~~~~~~~~L~~iY~~I~~~~~  185 (185)
T cd00171         150 MTLEDFIKNLRGINDGEDFPREFLKELYDSIKNNEI  185 (185)
T ss_pred             CCHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCC
Confidence            899999999999999999999999999999999987

cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.

>smart00222 Sec7 Sec7 domain

Probab=99.09  E-value=1.2e-10  Score=78.65  Aligned_cols=36  Identities=61%  Similarity=0.895  Sum_probs=35.2

Q ss_pred             CChHHHHHHhcCCCCCCCCCHHHHHHHHHHHhcCCc
Q 035311            1 MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEI   36 (68)
Q Consensus         1 Mt~e~FirnnrGin~G~Dlp~e~L~~iY~sI~~~ei   36 (68)
                      ||+++|++|++|+++|.|+|.++|++||++|+.+||
T Consensus       152 mt~~~Fi~~~~~~~~~~~~~~~~L~~iY~~I~~~~i  187 (187)
T smart00222      152 MTLEDFIKNVRGSNDGEDLPREFLEELYDSIKNNEI  187 (187)
T ss_pred             CCHHHHHHHHhccCCCCCCCHHHHHHHHHHHHhCCC
Confidence            899999999999999999999999999999999986

Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).

>COG5307 SEC7 domain proteins [General function prediction only]

Probab=99.09  E-value=9.5e-11  Score=95.44  Aligned_cols=60  Identities=35%  Similarity=0.486  Sum_probs=51.9

Q ss_pred             CChHHHHHHhcCCCCCCCCCHHHHHHHHHHHhcCCcccCCCCcCCCCccchHHHHHHHHHH
Q 035311            1 MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIGTTPEQCAGFPEITQSCWIDLMRSL   61 (68)
Q Consensus         1 Mt~e~FirnnrGin~G~Dlp~e~L~~iY~sI~~~ei~~~~~~~~~~~~~~~~~W~~l~~~~   61 (68)
                      ||+++|++|+||+|+|+|||++||+.+|++|+++||.++++++ ....+...-|..+....
T Consensus       417 MT~~df~~N~~g~n~g~~~~~~~L~~~Y~~I~~kei~~~e~~~-~~~~~~~~~~~~~~ss~  476 (1024)
T COG5307         417 MTFEDFSKNLRGENTGRDFPEEFLEEFYDNIKKKEIVLPEEHH-SSETSPEDNWPSLDSSF  476 (1024)
T ss_pred             ccHHHHHhhhcccCCccccCHHHHHHHHHHHhhccccchhhcc-cccccccccchhhhhhh
Confidence            9999999999999999999999999999999999999999986 44445567777766443

>PF01369 Sec7: Sec7 domain; InterPro: IPR000904 The SEC7 domain was named after the first protein found to contain such a region []

Probab=99.07  E-value=1.1e-10  Score=78.78  Aligned_cols=36  Identities=47%  Similarity=0.846  Sum_probs=29.8

Q ss_pred             CChHHHHHHhcCCCCCCCCCHHHHHHHHHHHhcCCc
Q 035311            1 MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEI   36 (68)
Q Consensus         1 Mt~e~FirnnrGin~G~Dlp~e~L~~iY~sI~~~ei   36 (68)
                      ||+++|++|++|+++|+|+|.++|+.||++|+++||
T Consensus       155 mt~~~Fi~~~~~~~~~~~~~~~~L~~iY~~I~~~~~  190 (190)
T PF01369_consen  155 MTKEDFIKNTRGIDDGKDIPEEFLESIYDSIKANPF  190 (190)
T ss_dssp             --HHHHHHHTTTTBTTBS--HHHHHHHHHHHHHS--
T ss_pred             CcHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhCCC
Confidence            899999999999999999999999999999999986

It has been shown to be linked with guanine nucleotide exchange function [, ]. The 3D structure of the domain displays several alpha-helices []. It was found to be associated with other domains involved in guanine nucleotide exchange (e.g., CDC25, Dbl) in mammalian factors [].; GO: 0005086 ARF guanyl-nucleotide exchange factor activity, 0032012 regulation of ARF protein signal transduction, 0005622 intracellular; PDB: 3SWV_A 3L8N_A 2R09_A 2R0D_B 1RE0_B 3LTL_A 1KU1_A 1XSZ_A 1XT0_B 1R8Q_E ....

>KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.86  E-value=1.7e-09  Score=84.83  Aligned_cols=42  Identities=36%  Similarity=0.621  Sum_probs=39.0

Q ss_pred             CChHHHHHHhcCCCCCCCCCHHHHHHHHHHHhcCCcccCCCC
Q 035311            1 MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIGTTPEQ   42 (68)
Q Consensus         1 Mt~e~FirnnrGin~G~Dlp~e~L~~iY~sI~~~ei~~~~~~   42 (68)
                      ||+++||.|+.|+|+|.|||+|+|..+|++||++.+.+.-+.
T Consensus       422 MtcqdFI~Nl~glndG~dF~kelLKaLy~SIKneklewAide  463 (774)
T KOG0932|consen  422 MTCQDFITNLAGLNDGGDFPKELLKALYNSIKNEKLEWAIDE  463 (774)
T ss_pred             ccHHHHHHHHhcccccCccHHHHHHHHHHHHhhhhhhhccCh
Confidence            999999999999999999999999999999999988876543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	68
1ku1_A	230	ARF guanine-nucleotide exchange factor 2; SEC7 dom	4e-12
1r8s_E	203	ARNO; protein transport/exchange factor, protein t	7e-12
3ltl_A	211	Brefeldin A-inhibited guanine nucleotide-exchange	4e-11
2r09_A	347	Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-ph	5e-11
1xsz_A	356	Guanine nucleotide exchange protein; ARF guanine n	5e-11

>1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine nucleotide exchange factor (GEF), ARF small GTP-binding proteins; 1.93A {Saccharomyces cerevisiae} SCOP: a.118.3.1 PDB: 1re0_B* Length = 230

 Score = 57.5 bits (139), Expect = 4e-12
 Identities = 11/36 (30%), Positives = 17/36 (47%)

Query: 1   MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEI 36
           M+ ED+  +        D P  +L ++Y SI   EI
Sbjct: 185 MSFEDYSGNLKGCCNHKDFPFWYLDRVYCSIRDKEI 220

>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A Length = 203

 Score = 56.3 bits (136), Expect = 7e-12
 Identities = 16/36 (44%), Positives = 17/36 (47%)

Query: 1   MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEI 36
           M  E F+  N  IN G DLP E L  LY SI     
Sbjct: 159 MGLERFVAMNRGINEGGDLPEELLRNLYDSIRNEPF 194

>3ltl_A Brefeldin A-inhibited guanine nucleotide-exchange 1; all alpha, guanine-nucleotide releasing factor, signaling PR; 2.20A {Homo sapiens} PDB: 3l8n_A 3swv_A Length = 211

 Score = 54.4 bits (131), Expect = 4e-11
 Identities = 17/45 (37%), Positives = 25/45 (55%)

Query: 1   MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIGTTPEQCAG 45
           MT+E +I+ N  IN   DLP E+LS +Y+ I   +I     +  G
Sbjct: 167 MTKEQYIKMNRGINDSKDLPEEYLSAIYNEIAGKKISMKETKETG 211

>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A* Length = 347

 Score = 55.0 bits (132), Expect = 5e-11
 Identities = 17/36 (47%), Positives = 17/36 (47%)

Query: 1   MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEI 36
            T E FI  N  IN G DLP E L  LY SI     
Sbjct: 161 PTAERFITMNRGINEGGDLPEELLRNLYESIKNEPF 196

>1xsz_A Guanine nucleotide exchange protein; ARF guanine nucleotide exchange factor, signaling protein; 1.41A {Legionella pneumophila} SCOP: a.118.3.1 d.129.9.1 PDB: 1xt0_B Length = 356

 Score = 54.7 bits (131), Expect = 5e-11
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 1   MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIGTTPEQCAGFPEITQSCWIDLMRS 60
           MT +   R+    N G D   +FL +LY  I          + +   E+T +  ++   +
Sbjct: 159 MTVDGLKRNLRGGNNGGDFDAKFLEELYSEIKAKPFELNFVKTSPGYELTST-TLNKDST 217

Query: 61  LRKQ 64
            +K 
Sbjct: 218 FKKL 221

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	68
1ku1_A	230	ARF guanine-nucleotide exchange factor 2; SEC7 dom	99.64
1r8s_E	203	ARNO; protein transport/exchange factor, protein t	99.6
3ltl_A	211	Brefeldin A-inhibited guanine nucleotide-exchange	99.6
1xsz_A	356	Guanine nucleotide exchange protein; ARF guanine n	99.4
2r09_A	347	Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-ph	99.3

>1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine nucleotide exchange factor (GEF), ARF small GTP-binding proteins; 1.93A {Saccharomyces cerevisiae} SCOP: a.118.3.1 PDB: 1re0_B*

Probab=99.64  E-value=1.4e-16  Score=110.59  Aligned_cols=43  Identities=28%  Similarity=0.345  Sum_probs=38.8

Q ss_pred             CChHHHHHHhcCCCCCCCCCHHHHHHHHHHHhcCCcccCCCCc
Q 035311            1 MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIGTTPEQC   43 (68)
Q Consensus         1 Mt~e~FirnnrGin~G~Dlp~e~L~~iY~sI~~~ei~~~~~~~   43 (68)
                      ||+++||+|+||+|+|+|||++||++||++|+++||+|++|++
T Consensus       185 MT~~~FikN~rg~n~g~d~p~e~L~~iY~~I~~~ei~~~ee~~  227 (230)
T 1ku1_A          185 MSFEDYSGNLKGCCNHKDFPFWYLDRVYCSIRDKEIVMPEEHH  227 (230)
T ss_dssp             CCHHHHHHHTTTCBTTBCCCHHHHHHHHHHHHHSCCCCC----
T ss_pred             CCHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhCcccCCccCC
Confidence            9999999999999999999999999999999999999999975

>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A

Probab=99.60  E-value=5.8e-16  Score=105.86  Aligned_cols=43  Identities=37%  Similarity=0.559  Sum_probs=40.6

Q ss_pred             CChHHHHHHhcCCCCCCCCCHHHHHHHHHHHhcCCcccCCCCc
Q 035311            1 MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIGTTPEQC   43 (68)
Q Consensus         1 Mt~e~FirnnrGin~G~Dlp~e~L~~iY~sI~~~ei~~~~~~~   43 (68)
                      ||+++||+|+||+|+|+|||+++|+.||++|+++||+++++++
T Consensus       159 Mt~~~Fi~n~rgin~g~d~p~e~L~~iYd~I~~~ei~~~~d~~  201 (203)
T 1r8s_E          159 MGLERFVAMNRGINEGGDLPEELLRNLYDSIRNEPFKIPEDDG  201 (203)
T ss_dssp             CCHHHHHHHTTTTBTTBCCCHHHHHHHHHHHHHSCCCCCCC--
T ss_pred             cCHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhCCCCCccCcC
Confidence            9999999999999999999999999999999999999999875

>3ltl_A Brefeldin A-inhibited guanine nucleotide-exchange 1; all alpha, guanine-nucleotide releasing factor, signaling PR; 2.20A {Homo sapiens} SCOP: a.118.3.0 PDB: 3l8n_A 3swv_A

Probab=99.60  E-value=7.6e-16  Score=105.89  Aligned_cols=43  Identities=37%  Similarity=0.650  Sum_probs=38.7

Q ss_pred             CChHHHHHHhcCCCCCCCCCHHHHHHHHHHHhcCCcccCCCCc
Q 035311            1 MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIGTTPEQC   43 (68)
Q Consensus         1 Mt~e~FirnnrGin~G~Dlp~e~L~~iY~sI~~~ei~~~~~~~   43 (68)
                      ||+++||+|+||+|+|+|||+++|+.||++|+++||+|+++..
T Consensus       167 Mt~~~Fi~n~rg~n~g~d~p~e~L~~iYd~I~~~ei~l~~~~~  209 (211)
T 3ltl_A          167 MTKEQYIKMNRGINDSKDLPEEYLSAIYNEIAGKKISMKETKE  209 (211)
T ss_dssp             CCHHHHHHHTCSSCSSSSCCHHHHHHHHHHHHHSCCCCC----
T ss_pred             CCHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhCCccCCCCCC
Confidence            9999999999999999999999999999999999999998864

>1xsz_A Guanine nucleotide exchange protein; ARF guanine nucleotide exchange factor, signaling protein; 1.41A {Legionella pneumophila} SCOP: a.118.3.1 d.129.9.1 PDB: 1xt0_B

Probab=99.40  E-value=2.1e-13  Score=99.71  Aligned_cols=43  Identities=26%  Similarity=0.320  Sum_probs=40.6

Q ss_pred             CChHHHHHHhcCCCCCCCCCHHHHHHHHHHHhcCCcccCCCCc
Q 035311            1 MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIGTTPEQC   43 (68)
Q Consensus         1 Mt~e~FirnnrGin~G~Dlp~e~L~~iY~sI~~~ei~~~~~~~   43 (68)
                      ||+++||+|+||+|+|+|||+++|+.||++|+++||+++..+.
T Consensus       159 MT~~dFikN~rgin~g~d~p~e~L~~iYd~I~~~ei~l~~~~~  201 (356)
T 1xsz_A          159 MTVDGLKRNLRGGNNGGDFDAKFLEELYSEIKAKPFELNFVKT  201 (356)
T ss_dssp             CCHHHHHHHTTTTBTTBCCCHHHHHHHHHHHHHSCCCCCBCSS
T ss_pred             CCHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhCCCccCCccc
Confidence            9999999999999999999999999999999999999986543

>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*

Probab=99.30  E-value=1.1e-12  Score=93.57  Aligned_cols=55  Identities=35%  Similarity=0.541  Sum_probs=47.7

Q ss_pred             CChHHHHHHhcCCCCCCCCCHHHHHHHHHHHhcCCcccCCCCcC----CCCccchHHHH
Q 035311            1 MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIGTTPEQCA----GFPEITQSCWI   55 (68)
Q Consensus         1 Mt~e~FirnnrGin~G~Dlp~e~L~~iY~sI~~~ei~~~~~~~~----~~~~~~~~~W~   55 (68)
                      ||+++||+|+||+|+|+|||+++|+.+|++|+++||.++++++.    .+.++...||+
T Consensus       161 mt~~~fi~n~~~~~~~~~~p~e~L~~iY~~I~~~ei~~~~e~~~~l~~~f~~~~k~G~L  219 (347)
T 2r09_A          161 PTAERFITMNRGINEGGDLPEELLRNLYESIKNEPFKIPEDDGNDLTYTFFNPDREGWL  219 (347)
T ss_dssp             CCHHHHHHHTTTTBTTBCCCHHHHHHHHHHHHHSCCCCTTCCSCCGGGCCCCCCEEEEE
T ss_pred             CCHHHHHHHhhcccCCCCCCHHHHHHHHHhhccCcccccccccccccccccccccCCee
Confidence            89999999999999999999999999999999999999987642    34455566665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	68
d1ku1a_	211	a.118.3.1 (A:) ARF guanine-exchange factor 2, Gea2	1e-10
d1xsza1	197	a.118.3.1 (A:1-197) RalF, N-terminal domain {Legio	3e-10
d1r8se_	187	a.118.3.1 (E:) Exchange factor ARNO {Human (Homo s	6e-10

>d1ku1a_ a.118.3.1 (A:) ARF guanine-exchange factor 2, Gea2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 211

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Sec7 domain
family: Sec7 domain
domain: ARF guanine-exchange factor 2, Gea2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.8 bits (124), Expect = 1e-10
 Identities = 11/36 (30%), Positives = 17/36 (47%)

Query: 1   MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEI 36
           M+ ED+  +        D P  +L ++Y SI   EI
Sbjct: 173 MSFEDYSGNLKGCCNHKDFPFWYLDRVYCSIRDKEI 208

>d1xsza1 a.118.3.1 (A:1-197) RalF, N-terminal domain {Legionella pneumophila [TaxId: 446]} Length = 197

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Sec7 domain
family: Sec7 domain
domain: RalF, N-terminal domain
species: Legionella pneumophila [TaxId: 446]

 Score = 50.7 bits (121), Expect = 3e-10
 Identities = 11/36 (30%), Positives = 15/36 (41%)

Query: 1   MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEI 36
           MT +   R+    N G D   +FL +LY  I     
Sbjct: 157 MTVDGLKRNLRGGNNGGDFDAKFLEELYSEIKAKPF 192

>d1r8se_ a.118.3.1 (E:) Exchange factor ARNO {Human (Homo sapiens) [TaxId: 9606]} Length = 187

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Sec7 domain
family: Sec7 domain
domain: Exchange factor ARNO
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (119), Expect = 6e-10
 Identities = 16/36 (44%), Positives = 17/36 (47%)

Query: 1   MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEI 36
           M  E F+  N  IN G DLP E L  LY SI     
Sbjct: 147 MGLERFVAMNRGINEGGDLPEELLRNLYDSIRNEPF 182

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	68
d1ku1a_	211	ARF guanine-exchange factor 2, Gea2 {Baker's yeast	99.49
d1r8se_	187	Exchange factor ARNO {Human (Homo sapiens) [TaxId:	99.43
d1xsza1	197	RalF, N-terminal domain {Legionella pneumophila [T	99.38

>d1ku1a_ a.118.3.1 (A:) ARF guanine-exchange factor 2, Gea2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Sec7 domain
family: Sec7 domain
domain: ARF guanine-exchange factor 2, Gea2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.49  E-value=9.7e-15  Score=98.35  Aligned_cols=39  Identities=28%  Similarity=0.354  Sum_probs=38.3

Q ss_pred             CChHHHHHHhcCCCCCCCCCHHHHHHHHHHHhcCCcccC
Q 035311            1 MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIGTT   39 (68)
Q Consensus         1 Mt~e~FirnnrGin~G~Dlp~e~L~~iY~sI~~~ei~~~   39 (68)
                      ||+++|++|+||||+|+|||.++|++||++|+++||+||
T Consensus       173 Mt~~~Fi~n~rgin~~~d~~~e~L~~iY~~I~~~ei~lP  211 (211)
T d1ku1a_         173 MSFEDYSGNLKGCCNHKDFPFWYLDRVYCSIRDKEIVMP  211 (211)
T ss_dssp             CCHHHHHHHTTTCBTTBCCCHHHHHHHHHHHHHSCCCCC
T ss_pred             CCHHHHHHHHhcCcCCCCCCHHHHHHHHHHHHhCCCCCC
Confidence            899999999999999999999999999999999999986

>d1r8se_ a.118.3.1 (E:) Exchange factor ARNO {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Sec7 domain
family: Sec7 domain
domain: Exchange factor ARNO
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=5.1e-14  Score=93.08  Aligned_cols=41  Identities=39%  Similarity=0.595  Sum_probs=40.1

Q ss_pred             CChHHHHHHhcCCCCCCCCCHHHHHHHHHHHhcCCcccCCC
Q 035311            1 MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIGTTPE   41 (68)
Q Consensus         1 Mt~e~FirnnrGin~G~Dlp~e~L~~iY~sI~~~ei~~~~~   41 (68)
                      ||+++|++|+||+|+|+|+|.++|.+||++|+++||++++|
T Consensus       147 mt~~~Fi~n~~~~~~~~~~~~e~L~~iYd~I~~~~~~~~~e  187 (187)
T d1r8se_         147 MGLERFVAMNRGINEGGDLPEELLRNLYDSIRNEPFKIPED  187 (187)
T ss_dssp             CCHHHHHHHTTTTBTTBCCCHHHHHHHHHHHHHSCCCCCCC
T ss_pred             CCHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHcCCCCCCCC
Confidence            89999999999999999999999999999999999999986

>d1xsza1 a.118.3.1 (A:1-197) RalF, N-terminal domain {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Sec7 domain
family: Sec7 domain
domain: RalF, N-terminal domain
species: Legionella pneumophila [TaxId: 446]

Probab=99.38  E-value=1.6e-13  Score=91.47  Aligned_cols=39  Identities=28%  Similarity=0.393  Sum_probs=37.9

Q ss_pred             CChHHHHHHhcCCCCCCCCCHHHHHHHHHHHhcCCcccC
Q 035311            1 MTEEDFIRSNGHINGGNDLPREFLSKLYHSICKNEIGTT   39 (68)
Q Consensus         1 Mt~e~FirnnrGin~G~Dlp~e~L~~iY~sI~~~ei~~~   39 (68)
                      ||+++|++|+||+|+|.|||.++|++||++|+++||++.
T Consensus       157 Mt~~~Fi~n~r~~~~~~~~~~e~L~~iY~~I~~~~~~l~  195 (197)
T d1xsza1         157 MTVDGLKRNLRGGNNGGDFDAKFLEELYSEIKAKPFELN  195 (197)
T ss_dssp             CCHHHHHHHTTTTBTTBCCCHHHHHHHHHHHHHSCCCCC
T ss_pred             CCHHHHHHHHhcccCCCCCCHHHHHHHHHHHhCCCeeee
Confidence            899999999999999999999999999999999999874