Citrus Sinensis ID: 035312

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------
Protein Sequence
MRIVAFTRRLNCFSRIKTFPYPYGYTPCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIF
Secondary Structure (PSIPRED)
ccEEEEEEEEEcccccccccccccccccccccccccccccccEEEEEEEcccHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEccccccccccccccccccccccccccccccccEEEEEEEcccHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MRIVAFTRRLNCfsriktfpypygytpcralsdsktivsneAVVPVLIVGAGPVGLVLSILLTKLGIF
Flexible Loop (DISEMBL)
mrivaftrrlncfsriktfpypygYTPCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIF
Low Complexity Region (SEG)
MRIVAFTRRLNCFSRIKTFPYPYGYTPCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIF
Disordered region (IsUnstruct)
**IVAFTRRLNCFSRIKTFPYPYGYTPCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGI*
Disordered Region (DISOPRED)
***VAFTRRLNCFSRIKTFPYPYGYTPC*********VSNEAVVPVLIVGAGPVGLVLSILLTKLGIF
Disordered Region (DISEMBL)
MRIVAFTRRLNCFSRIKTFPYPYGYTPCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIF
Disordered Region (DISPRO)
*RIVAFTRRLNCFSRIKTFPYPYGYTPCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIF
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRIVAFTRRLNCFSRIKTFPYPYGYTPCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	68
255547866	685	conserved hypothetical protein [Ricinus	0.764	0.075	0.584	9e-08
357463063	983	CCP [Medicago truncatula] gi|355490861|g	0.573	0.039	0.743	3e-07
224100055	707	predicted protein [Populus trichocarpa]	0.926	0.089	0.492	6e-07
449449080	709	PREDICTED: putative polyketide hydroxyla	0.985	0.094	0.471	1e-06
225425869	708	PREDICTED: 2,4-dichlorophenol 6-monooxyg	0.808	0.077	0.492	1e-06
356538099	714	PREDICTED: putative polyketide hydroxyla	0.985	0.093	0.478	5e-06
297808795	709	predicted protein [Arabidopsis lyrata su	0.941	0.090	0.492	7e-06
297851148	709	EMB2421 [Arabidopsis lyrata subsp. lyrat	0.764	0.073	0.527	3e-05
79351534	709	FAD/NAD(P)-binding oxidoreductase family	0.764	0.073	0.545	4e-05

>gi|255547866|ref|XP_002514990.1| conserved hypothetical protein [Ricinus communis] gi|223546041|gb|EEF47544.1| conserved hypothetical protein [Ricinus communis]

 Score = 60.8 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 41/53 (77%), Gaps = 1/53 (1%)

Query: 15 RIKTFPYPYGYTPCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGI 67
          R K   Y Y Y+  R LS S+++ S+++++PVLIVGAGPVGL LSILLTKLG+
Sbjct: 11 RNKLCSYGY-YSQSRGLSHSQSLNSDDSILPVLIVGAGPVGLTLSILLTKLGV 62

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463063|ref|XP_003601813.1| CCP [Medicago truncatula] gi|355490861|gb|AES72064.1| CCP [Medicago truncatula]

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/39 (74%), Positives = 33/39 (84%)

Query: 29  RALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGI 67
           R  S +K I  N+AV+PVLI+GAGPVGLVLSILLTKLGI
Sbjct: 266 RGFSKAKVINGNDAVLPVLIIGAGPVGLVLSILLTKLGI 304

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100055|ref|XP_002311726.1| predicted protein [Populus trichocarpa] gi|222851546|gb|EEE89093.1| predicted protein [Populus trichocarpa]

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/69 (49%), Positives = 42/69 (60%), Gaps = 6/69 (8%)

Query: 3  IVAFTRRLNCFSRIKTFP----YPYGYTPCRALSDSKTIVSNEAVVPVLIVGAGPVGLVL 58
          I  F+       RI+  P    Y Y +  CR  S  K    +++V+PVLIVGAGPVGLVL
Sbjct: 7  IKGFSSVYRAKPRIRVHPSFCQYGYCHIQCRTFSHFKD--HDDSVLPVLIVGAGPVGLVL 64

Query: 59 SILLTKLGI 67
          SILLTKLG+
Sbjct: 65 SILLTKLGV 73

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449080|ref|XP_004142293.1| PREDICTED: putative polyketide hydroxylase-like [Cucumis sativus] gi|449513114|ref|XP_004164234.1| PREDICTED: putative polyketide hydroxylase-like [Cucumis sativus]

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/70 (47%), Positives = 41/70 (58%), Gaps = 3/70 (4%)

Query: 1  MRIVAFTRRLNCFSRIKTF--PYPYGYTPCRALSDSKTIVS-NEAVVPVLIVGAGPVGLV 57
          M  + F +R N   +        P     CR  S+SK     +E +VPVLIVGAGPVGLV
Sbjct: 9  MGFLGFFKRFNGLQKFDAMLRTKPLRNIQCRGSSNSKIFHGGDETMVPVLIVGAGPVGLV 68

Query: 58 LSILLTKLGI 67
          L+ILLTKLG+
Sbjct: 69 LAILLTKLGV 78

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425869|ref|XP_002266262.1| PREDICTED: 2,4-dichlorophenol 6-monooxygenase [Vitis vinifera] gi|297738359|emb|CBI27560.3| unnamed protein product [Vitis vinifera]

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/67 (49%), Positives = 37/67 (55%), Gaps = 12/67 (17%)

Query: 1  MRIVAFTRRLNCFSRIKTFPYPYGYTPCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSI 60
          M ++ F R             PY YT  R  S+    VS   V PVLIVGAGPVGL LSI
Sbjct: 1  MEVLGFVRMFRTM--------PYQYTQKRGFSE----VSRNGVFPVLIVGAGPVGLALSI 48

Query: 61 LLTKLGI 67
          LLTKLG+
Sbjct: 49 LLTKLGV 55

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538099|ref|XP_003537542.1| PREDICTED: putative polyketide hydroxylase-like [Glycine max]

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/69 (47%), Positives = 40/69 (57%), Gaps = 2/69 (2%)

Query: 1  MRIVAFTRRLNCFSRIKTFPYPYG--YTPCRALSDSKTIVSNEAVVPVLIVGAGPVGLVL 58
          M  + F RR +   + KT    Y   +   R  S    +  N+ V PVLI+GAGPVGLVL
Sbjct: 1  MGFLRFIRRYSFPFKDKTRNRAYALQHMQSRGFSKDGVLNGNDVVHPVLIIGAGPVGLVL 60

Query: 59 SILLTKLGI 67
          SILLTKLGI
Sbjct: 61 SILLTKLGI 69

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297808795|ref|XP_002872281.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297318118|gb|EFH48540.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 33/67 (49%), Positives = 43/67 (64%), Gaps = 3/67 (4%)

Query: 2  RIVAFTRRLNCFSRIKTFPYPYGYTPCRALSDSKTIVSNEAV-VPVLIVGAGPVGLVLSI 60
          RI   TR     SR++  P  Y  +  + LS++ +    +A  +PVLIVGAGPVGLVLSI
Sbjct: 6  RITGVTRISRNNSRVRVCPVRYFQS--KDLSNTNSFNGEDAAKLPVLIVGAGPVGLVLSI 63

Query: 61 LLTKLGI 67
          LLTKLG+
Sbjct: 64 LLTKLGV 70

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297851148|ref|XP_002893455.1| EMB2421 [Arabidopsis lyrata subsp. lyrata] gi|297339297|gb|EFH69714.1| EMB2421 [Arabidopsis lyrata subsp. lyrata]

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 38/55 (69%), Gaps = 3/55 (5%)

Query: 14 SRIKTFPYPYGYTPCRALSDSKTIVSNEAV-VPVLIVGAGPVGLVLSILLTKLGI 67
          SR++   YP  +   + LS + +    +A  +PVLIVGAGPVGLVLSILLTKLG+
Sbjct: 18 SRVRV--YPVRHFQSKDLSSTNSFNGQDAAKLPVLIVGAGPVGLVLSILLTKLGV 70

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79351534|ref|NP_173844.2| FAD/NAD(P)-binding oxidoreductase family protein [Arabidopsis thaliana] gi|26450238|dbj|BAC42236.1| unknown protein [Arabidopsis thaliana] gi|332192397|gb|AEE30518.1| FAD/NAD(P)-binding oxidoreductase family protein [Arabidopsis thaliana]

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 3/55 (5%)

Query: 14 SRIKTFPYPYGYTPCRALSDSKTIVSNEAV-VPVLIVGAGPVGLVLSILLTKLGI 67
          SR++   YP  Y   + LS +      +A  +PVLIVGAGPVGLVLSILLTKLG+
Sbjct: 18 SRVRV--YPVRYFQRKDLSSTNLFNGEDAAKLPVLIVGAGPVGLVLSILLTKLGV 70

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	68
TAIR|locus:2032482	709	EMB2421 "AT1G24340" [Arabidops	0.764	0.073	0.545	6.8e-07
ASPGD|ASPL0000011915	573	AN4002 [Emericella nidulans (t	0.705	0.083	0.437	0.00012

TAIR|locus:2032482 EMB2421 "AT1G24340" [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 6.8e-07, P = 6.8e-07
 Identities = 30/55 (54%), Positives = 37/55 (67%)

Query:    14 SRIKTFPYPYGYTPCRALSDSKTIVSNEAV-VPVLIVGAGPVGLVLSILLTKLGI 67
             SR++   YP  Y   + LS +      +A  +PVLIVGAGPVGLVLSILLTKLG+
Sbjct:    18 SRVRV--YPVRYFQRKDLSSTNLFNGEDAAKLPVLIVGAGPVGLVLSILLTKLGV 70

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0016491 "oxidoreductase activity" evidence=IEA

ASPGD|ASPL0000011915 AN4002 [Emericella nidulans (taxid:162425)]

 Score = 103 (41.3 bits), Expect = 0.00012, P = 0.00012
 Identities = 21/48 (43%), Positives = 32/48 (66%)

Query:    20 PYPYGYTPCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGI 67
             P P   T  R LS+ KT ++  A+  +++VGAGP GL+L +LL+K G+
Sbjct:   150 PQPSLTTSSRPLSEEKTSLTTMALKKIIVVGAGPSGLLLGLLLSKQGV 197


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.329   0.145   0.436    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       68        68   0.00091  102 3  11 22  0.38    28
                                                     29  0.38    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  407 (43 KB)
  Total size of DFA:  71 KB (2062 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.44u 0.22s 7.66t   Elapsed:  00:00:00
  Total cpu time:  7.44u 0.22s 7.66t   Elapsed:  00:00:00
  Start:  Fri May 10 07:29:25 2013   End:  Fri May 10 07:29:25 2013

GO:0005575 "cellular_component" evidence=ND

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004497 "monooxygenase activity" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	68
PRK08132	547	PRK08132, PRK08132, FAD-dependent oxidoreductase;	1e-08
pfam01494	349	pfam01494, FAD_binding_3, FAD binding domain	8e-07
PRK06183	500	PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydr	5e-05
COG0654	387	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox	6e-05
PRK06126	545	PRK06126, PRK06126, hypothetical protein; Provisio	1e-04
PRK08243	392	PRK08243, PRK08243, 4-hydroxybenzoate 3-monooxygen	3e-04
PRK06184	502	PRK06184, PRK06184, hypothetical protein; Provisio	0.002
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	0.003

>gnl|CDD|236158 PRK08132, PRK08132, FAD-dependent oxidoreductase; Provisional

 Score = 48.7 bits (117), Expect = 1e-08
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)

Query: 22 PYGYTPCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGI 67
           + Y P              A  PV++VGAGPVGL L+I L + G+
Sbjct: 7  KFPYRPHADQDADDP-----ARHPVVVVGAGPVGLALAIDLAQQGV 47

Length = 547

>gnl|CDD|216530 pfam01494, FAD_binding_3, FAD binding domain

 Score = 43.5 bits (103), Expect = 8e-07
 Identities = 13/24 (54%), Positives = 18/24 (75%)

Query: 44 VPVLIVGAGPVGLVLSILLTKLGI 67
            VLIVG GP GL+L++LL + G+
Sbjct: 2  TDVLIVGGGPAGLMLALLLARAGV 25

This domain is involved in FAD binding in a number of enzymes. Length = 349

>gnl|CDD|235727 PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

 Score = 38.3 bits (90), Expect = 5e-05
 Identities = 13/19 (68%), Positives = 15/19 (78%)

Query: 44 VPVLIVGAGPVGLVLSILL 62
            V+IVGAGPVGL L+ LL
Sbjct: 11 TDVVIVGAGPVGLTLANLL 29

Length = 500

>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score = 38.5 bits (90), Expect = 6e-05
 Identities = 12/25 (48%), Positives = 18/25 (72%)

Query: 43 VVPVLIVGAGPVGLVLSILLTKLGI 67
          ++ V IVGAGP GL L++ L + G+
Sbjct: 2  MLDVAIVGAGPAGLALALALARAGL 26

Length = 387

>gnl|CDD|235704 PRK06126, PRK06126, hypothetical protein; Provisional

 Score = 37.3 bits (87), Expect = 1e-04
 Identities = 14/23 (60%), Positives = 18/23 (78%)

Query: 45 PVLIVGAGPVGLVLSILLTKLGI 67
          PVLIVG GPVGL L++ L + G+
Sbjct: 9  PVLIVGGGPVGLALALDLGRRGV 31

Length = 545

>gnl|CDD|236198 PRK08243, PRK08243, 4-hydroxybenzoate 3-monooxygenase; Validated

 Score = 36.3 bits (85), Expect = 3e-04
 Identities = 13/24 (54%), Positives = 15/24 (62%)

Query: 44 VPVLIVGAGPVGLVLSILLTKLGI 67
            V I+GAGP GL+L  LL   GI
Sbjct: 3  TQVAIIGAGPAGLLLGQLLHLAGI 26

Length = 392

>gnl|CDD|235728 PRK06184, PRK06184, hypothetical protein; Provisional

 Score = 33.8 bits (78), Expect = 0.002
 Identities = 14/22 (63%), Positives = 17/22 (77%)

Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
          VLIVGAGP GL L+I L + G+
Sbjct: 6  VLIVGAGPTGLTLAIELARRGV 27

Length = 502

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 33.6 bits (77), Expect = 0.003
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
          V+IVGAGP G   +  L K G+
Sbjct: 6  VVIVGAGPAGSSAARRLAKAGL 27

Length = 396

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	68
PLN02985	514	squalene monooxygenase	98.63
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.53
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.45
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	98.41
PRK09126	392	hypothetical protein; Provisional	98.39
PRK08013	400	oxidoreductase; Provisional	98.36
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	98.35
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.35
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.33
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.33
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	98.33
PRK10157	428	putative oxidoreductase FixC; Provisional	98.31
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	98.31
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	98.31
PRK06184	502	hypothetical protein; Provisional	98.3
PRK10015	429	oxidoreductase; Provisional	98.3
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.29
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.29
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.29
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.28
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.27
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.27
PRK07045	388	putative monooxygenase; Reviewed	98.27
PRK06185	407	hypothetical protein; Provisional	98.26
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	98.26
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.25
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.24
PRK08244	493	hypothetical protein; Provisional	98.24
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.23
PRK07236	386	hypothetical protein; Provisional	98.21
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.21
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	98.2
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	98.2
PRK10262	321	thioredoxin reductase; Provisional	98.2
PRK06126	545	hypothetical protein; Provisional	98.19
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	98.18
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	98.18
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	98.18
PRK06847	375	hypothetical protein; Provisional	98.17
PRK08163	396	salicylate hydroxylase; Provisional	98.17
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.17
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	98.16
PRK08132	547	FAD-dependent oxidoreductase; Provisional	98.15
PRK07208	479	hypothetical protein; Provisional	98.15
PRK07190	487	hypothetical protein; Provisional	98.15
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	98.14
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.14
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.14
PRK06753	373	hypothetical protein; Provisional	98.13
PRK06996	398	hypothetical protein; Provisional	98.13
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.12
PRK06834	488	hypothetical protein; Provisional	98.12
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.12
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	98.09
PLN02697	529	lycopene epsilon cyclase	98.09
PLN02463	447	lycopene beta cyclase	98.09
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.08
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	98.07
PRK06116	450	glutathione reductase; Validated	98.05
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	98.05
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.05
PRK11883	451	protoporphyrinogen oxidase; Reviewed	98.05
PLN02576	496	protoporphyrinogen oxidase	98.05
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	98.05
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	98.05
PRK07588	391	hypothetical protein; Provisional	98.04
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	98.04
PRK08294	634	phenol 2-monooxygenase; Provisional	98.03
PRK07538	413	hypothetical protein; Provisional	98.03
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.02
PRK07233	434	hypothetical protein; Provisional	98.02
PRK06475	400	salicylate hydroxylase; Provisional	98.02
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.02
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.02
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.01
PRK06370	463	mercuric reductase; Validated	98.01
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.0
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.0
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.0
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.99
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	97.99
PRK11445	351	putative oxidoreductase; Provisional	97.97
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	97.97
PRK08274	466	tricarballylate dehydrogenase; Validated	97.97
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	97.96
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	97.96
COG2081	408	Predicted flavoproteins [General function predicti	97.95
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	97.95
PRK07121	492	hypothetical protein; Validated	97.95
PLN02268	435	probable polyamine oxidase	97.94
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	97.94
PRK14694	468	putative mercuric reductase; Provisional	97.93
PRK11728	393	hydroxyglutarate oxidase; Provisional	97.92
PRK05868	372	hypothetical protein; Validated	97.92
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	97.91
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	97.91
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	97.9
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	97.89
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	97.88
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	97.88
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	97.88
PLN02661	357	Putative thiazole synthesis	97.88
PRK12779	944	putative bifunctional glutamate synthase subunit b	97.88
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	97.87
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	97.86
PTZ00367	567	squalene epoxidase; Provisional	97.85
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	97.85
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	97.85
TIGR02053	463	MerA mercuric reductase. This model represents the	97.85
PRK12831	464	putative oxidoreductase; Provisional	97.83
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	97.83
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	97.82
PLN02815	594	L-aspartate oxidase	97.81
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	97.81
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	97.81
PRK12416	463	protoporphyrinogen oxidase; Provisional	97.81
PRK13748	561	putative mercuric reductase; Provisional	97.8
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	97.8
PTZ00052	499	thioredoxin reductase; Provisional	97.77
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	97.77
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	97.77
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	97.76
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	97.76
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.75
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	97.75
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	97.74
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	97.74
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.74
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	97.74
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	97.74
PLN02852	491	ferredoxin-NADP+ reductase	97.72
PRK06567	1028	putative bifunctional glutamate synthase subunit b	97.71
COG3349	485	Uncharacterized conserved protein [Function unknow	97.71
PRK12842	574	putative succinate dehydrogenase; Reviewed	97.7
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	97.7
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	97.7
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	97.7
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	97.69
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.68
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	97.68
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	97.68
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	97.67
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	97.67
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.67
PTZ00383	497	malate:quinone oxidoreductase; Provisional	97.67
PRK07804	541	L-aspartate oxidase; Provisional	97.66
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	97.66
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	97.66
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	97.65
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	97.64
PLN02676	487	polyamine oxidase	97.64
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	97.64
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	97.64
PLN02507	499	glutathione reductase	97.64
PRK08401	466	L-aspartate oxidase; Provisional	97.63
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.63
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	97.63
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	97.62
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	97.61
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	97.6
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	97.6
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	97.6
PLN02464	627	glycerol-3-phosphate dehydrogenase	97.59
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.59
PTZ00058	561	glutathione reductase; Provisional	97.59
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	97.58
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	97.58
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	97.58
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	97.58
PRK14727	479	putative mercuric reductase; Provisional	97.57
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	97.57
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	97.57
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	97.57
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	97.56
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	97.56
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.56
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	97.56
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	97.56
PLN02568	539	polyamine oxidase	97.56
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	97.55
PRK08275	554	putative oxidoreductase; Provisional	97.55
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	97.55
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	97.55
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	97.53
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	97.52
PRK05257	494	malate:quinone oxidoreductase; Validated	97.52
PLN02612	567	phytoene desaturase	97.5
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	97.5
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	97.49
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	97.49
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.48
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	97.47
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.46
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.45
PLN02546	558	glutathione reductase	97.44
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.42
PRK07395	553	L-aspartate oxidase; Provisional	97.41
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	97.4
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	97.39
PLN02529	738	lysine-specific histone demethylase 1	97.39
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	97.37
PRK09077	536	L-aspartate oxidase; Provisional	97.37
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	97.36
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.36
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	97.35
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.35
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.33
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	97.33
PRK13977	576	myosin-cross-reactive antigen; Provisional	97.31
PRK12839	572	hypothetical protein; Provisional	97.31
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	97.3
PRK13339	497	malate:quinone oxidoreductase; Reviewed	97.3
PRK08071	510	L-aspartate oxidase; Provisional	97.3
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	97.29
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	97.28
COG0579	429	Predicted dehydrogenase [General function predicti	97.27
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	97.27
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	97.26
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.26
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	97.25
PRK06175	433	L-aspartate oxidase; Provisional	97.24
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	97.23
PLN02328	808	lysine-specific histone demethylase 1 homolog	97.21
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.19
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	97.18
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	97.16
PRK02106	560	choline dehydrogenase; Validated	97.14
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	97.13
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	97.12
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.11
PLN02487	569	zeta-carotene desaturase	97.1
PTZ00188	506	adrenodoxin reductase; Provisional	97.08
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.06
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	97.06
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	97.06
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	97.05
PRK07512	513	L-aspartate oxidase; Provisional	97.03
PRK09564	444	coenzyme A disulfide reductase; Reviewed	97.03
PRK13984	604	putative oxidoreductase; Provisional	97.03
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	97.02
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	96.99
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	96.98
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	96.89
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	96.88
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	96.86
PRK07845	466	flavoprotein disulfide reductase; Reviewed	96.82
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	96.78
PRK09897	534	hypothetical protein; Provisional	96.77
PLN02785	587	Protein HOTHEAD	96.67
COG2907	447	Predicted NAD/FAD-binding protein [General functio	96.66
COG3573	552	Predicted oxidoreductase [General function predict	96.65
PRK13512	438	coenzyme A disulfide reductase; Provisional	96.62
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	96.59
PLN03000	881	amine oxidase	96.57
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	96.55
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	96.29
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	96.27
PLN02976	1713	amine oxidase	96.26
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	96.24
KOG2853	509	consensus Possible oxidoreductase [General functio	96.23
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	96.13
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	96.13
KOG2960	328	consensus Protein involved in thiamine biosynthesi	96.12
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	96.09
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	95.97
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	95.87
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	95.82
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	95.77
PRK07846	451	mycothione reductase; Reviewed	95.77
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	95.67
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	95.62
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	95.59
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	95.58
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.56
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.52
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	95.33
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	95.31
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	95.15
KOG2852	380	consensus Possible oxidoreductase [General functio	95.01
PRK14989	847	nitrite reductase subunit NirD; Provisional	94.98
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	94.82
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	94.73
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	94.71
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	94.57
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	94.57
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	94.45
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	94.45
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	94.32
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	94.25
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.21
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	94.2
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	94.18
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	94.14
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	94.02
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	94.01
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	93.96
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	93.95
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	93.83
KOG2755	334	consensus Oxidoreductase [General function predict	93.76
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	93.74
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	93.58
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	93.55
TIGR02053	463	MerA mercuric reductase. This model represents the	93.55
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	93.41
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	93.37
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	93.34
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	93.17
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	93.11
PRK09564	444	coenzyme A disulfide reductase; Reviewed	93.04
PRK15116	268	sulfur acceptor protein CsdL; Provisional	93.04
PRK06370	463	mercuric reductase; Validated	93.03
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	92.99
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	92.97
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	92.85
PRK07846	451	mycothione reductase; Reviewed	92.85
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	92.8
PRK13512	438	coenzyme A disulfide reductase; Provisional	92.79
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	92.79
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	92.7
PRK12770	352	putative glutamate synthase subunit beta; Provisio	92.65
PRK14694	468	putative mercuric reductase; Provisional	92.61
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	92.6
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	92.53
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	92.53
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	92.39
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	92.36
PRK13748	561	putative mercuric reductase; Provisional	92.33
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	92.27
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	92.23
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	92.18
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	92.11
PRK06116	450	glutathione reductase; Validated	92.11
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	92.1
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	92.06
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	92.04
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	92.04
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	92.03
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	92.02
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	92.0
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	91.98
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	91.98
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.96
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	91.87
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	91.85
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	91.82
COG0569	225	TrkA K+ transport systems, NAD-binding component [	91.81
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	91.81
PRK12831	464	putative oxidoreductase; Provisional	91.8
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	91.71
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	91.69
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.65
PTZ00052	499	thioredoxin reductase; Provisional	91.65
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	91.64
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	91.64
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	91.6
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.59
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	91.58
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	91.57
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	91.55
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.54
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	91.54
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	91.54
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	91.49
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	91.48
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	91.46
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	91.46
PRK14727	479	putative mercuric reductase; Provisional	91.38
PRK10262	321	thioredoxin reductase; Provisional	91.34
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	91.33
PRK08328	231	hypothetical protein; Provisional	91.3
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.28
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	91.19
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	91.14
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	90.96
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	90.94
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	90.94
PRK06719	157	precorrin-2 dehydrogenase; Validated	90.92
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	90.9
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	90.89
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.84
PRK14989	847	nitrite reductase subunit NirD; Provisional	90.77
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	90.72
PRK07845	466	flavoprotein disulfide reductase; Reviewed	90.71
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	90.53
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	90.51
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	90.47
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	90.45
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	90.44
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	90.42
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	90.39
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.35
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	90.25
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	90.18
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	90.18
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	90.11
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	90.09
PRK08223	287	hypothetical protein; Validated	89.97
PLN02507	499	glutathione reductase	89.9
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	89.85
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	89.75
PRK06223	307	malate dehydrogenase; Reviewed	89.75
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	89.73
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.66
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	89.61
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	89.55
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	89.43
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	89.4
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	89.39
PTZ00117	319	malate dehydrogenase; Provisional	89.33
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.31
PRK13984	604	putative oxidoreductase; Provisional	89.28
PTZ00058	561	glutathione reductase; Provisional	89.12
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	89.08
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	89.06
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	88.98
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	88.91
PLN02353	473	probable UDP-glucose 6-dehydrogenase	88.85
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	88.8
PLN02602	350	lactate dehydrogenase	88.72
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	88.69
PLN02546	558	glutathione reductase	88.47
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	88.46
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	88.39
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	88.38
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	88.34
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	88.32
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	88.27
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	88.12
PTZ00082	321	L-lactate dehydrogenase; Provisional	88.04
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	87.97
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	87.94
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	87.92
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	87.88
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	87.86
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	87.81
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	87.79
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	87.75
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	87.73
PTZ00153	659	lipoamide dehydrogenase; Provisional	87.73
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	87.69
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	87.59
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	87.52
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	87.52
PRK05442	326	malate dehydrogenase; Provisional	87.42
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	87.4
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	87.37
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	87.36
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	87.33
PRK12814	652	putative NADPH-dependent glutamate synthase small	87.32
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	87.2
PRK07411	390	hypothetical protein; Validated	87.2
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	87.18
PRK08306	296	dipicolinate synthase subunit A; Reviewed	87.16
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	87.11
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	87.08
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	87.01
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	86.98
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	86.93
PRK07417	279	arogenate dehydrogenase; Reviewed	86.77
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	86.73
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	86.68
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	86.57
PRK04148	134	hypothetical protein; Provisional	86.57
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	86.55
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	86.55
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	86.14
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	86.14
PLN00112	444	malate dehydrogenase (NADP); Provisional	86.11
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	86.02
COG4716	587	Myosin-crossreactive antigen [Function unknown]	85.97
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	85.9
PRK12779	944	putative bifunctional glutamate synthase subunit b	85.89
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	85.6
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	85.54
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	85.49
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	85.41
PRK12548	289	shikimate 5-dehydrogenase; Provisional	85.34
PF10100	429	DUF2338: Uncharacterized protein conserved in bact	85.16
PLN02852	491	ferredoxin-NADP+ reductase	84.98
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	84.96
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	84.95
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	84.88
PRK09496	453	trkA potassium transporter peripheral membrane com	84.77
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	84.74
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	84.71
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	84.61
PLN00106	323	malate dehydrogenase	84.55
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	84.48
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	84.45
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	84.26
PRK08017	256	oxidoreductase; Provisional	84.19
PRK06153	393	hypothetical protein; Provisional	84.16
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	84.16
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	84.1
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	84.01
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	83.99
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	83.69
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	83.52
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	83.48
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	83.43

>PLN02985 squalene monooxygenase

Probab=98.63  E-value=8.9e-09  Score=78.03  Aligned_cols=59  Identities=27%  Similarity=0.343  Sum_probs=41.4

Q ss_pred             eeeeeceeeeeeecCCcCCccccccCCCCCCCcccccCccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312            3 IVAFTRRLNCFSRIKTFPYPYGYTPCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++|+++|+.++..+.      ........+.......+..+||+|||||++|+++|+.|+++|+
T Consensus         9 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~DViIVGAG~aGlalA~aLa~~G~   67 (514)
T PLN02985          9 LLAFVLTWTVFYVTNR------KKKATELADAVAEERKDGATDVIIVGAGVGGSALAYALAKDGR   67 (514)
T ss_pred             HHHHHHHHHHHHHhhh------hhhhcchhhhhcccCcCCCceEEEECCCHHHHHHHHHHHHcCC
Confidence            3688999999998887      1111111111111123456899999999999999999999986

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.53  E-value=6.9e-08  Score=65.88  Aligned_cols=25  Identities=48%  Similarity=0.775  Sum_probs=21.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ++||+||||||+|+++|+.|+++|+
T Consensus         1 ~~dV~IvGaG~aGl~~A~~L~~~G~   25 (356)
T PF01494_consen    1 EYDVAIVGAGPAGLAAALALARAGI   25 (356)
T ss_dssp             EEEEEEE--SHHHHHHHHHHHHTTC
T ss_pred             CceEEEECCCHHHHHHHHHHHhccc
Confidence            3799999999999999999999986

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.45  E-value=3e-07  Score=65.79  Aligned_cols=26  Identities=42%  Similarity=0.599  Sum_probs=24.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+||+||||||+|+++|+.|+++|+
T Consensus        17 ~~~dV~IvGaG~aGl~~A~~L~~~G~   42 (415)
T PRK07364         17 LTYDVAIVGGGIVGLTLAAALKDSGL   42 (415)
T ss_pred             cccCEEEECcCHHHHHHHHHHhcCCC
Confidence            46899999999999999999999986

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=98.41  E-value=2.3e-07  Score=67.35  Aligned_cols=26  Identities=42%  Similarity=0.594  Sum_probs=24.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+||+|||+||||++||+.|+++|+
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G~   27 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAGL   27 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHcCC
Confidence            46999999999999999999999984

>PRK09126 hypothetical protein; Provisional

Probab=98.39  E-value=3.3e-07  Score=65.16  Aligned_cols=27  Identities=33%  Similarity=0.568  Sum_probs=24.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGIF   68 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~~   68 (68)
                      .++||+||||||+|+++|+.|+++|+.
T Consensus         2 ~~~dviIvGgG~aGl~~A~~L~~~G~~   28 (392)
T PRK09126          2 MHSDIVVVGAGPAGLSFARSLAGSGLK   28 (392)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhCCCc
Confidence            468999999999999999999999873

>PRK08013 oxidoreductase; Provisional

Probab=98.36  E-value=4.2e-07  Score=65.69  Aligned_cols=26  Identities=38%  Similarity=0.562  Sum_probs=24.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +++||+||||||+|+++|+.|+++|+
T Consensus         2 ~~~dV~IvGaGpaGl~~A~~La~~G~   27 (400)
T PRK08013          2 QSVDVVIAGGGMVGLAVACGLQGSGL   27 (400)
T ss_pred             CcCCEEEECcCHHHHHHHHHHhhCCC
Confidence            35899999999999999999999986

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=4.2e-07  Score=65.62  Aligned_cols=26  Identities=35%  Similarity=0.774  Sum_probs=24.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +.+||+|||+||+||+||+++++.++
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r~~l   27 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAARAGL   27 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHHcCC
Confidence            46999999999999999999999885

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.35  E-value=5e-07  Score=60.80  Aligned_cols=24  Identities=38%  Similarity=0.653  Sum_probs=22.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +||+||||||+|+++|+.|+++|+
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~   24 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGL   24 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC
Confidence            699999999999999999999986

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.33  E-value=5.4e-07  Score=64.67  Aligned_cols=25  Identities=28%  Similarity=0.424  Sum_probs=23.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+||+||||||+|+++|+.|+++|+
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~G~   27 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQGR   27 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCC
Confidence            4799999999999999999999986

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.33  E-value=5.2e-07  Score=63.96  Aligned_cols=26  Identities=38%  Similarity=0.752  Sum_probs=23.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHC---CC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKL---GI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~---G~   67 (68)
                      ..+||+||||||+|+++|+.|+++   |+
T Consensus         2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~   30 (395)
T PRK05732          2 SRMDVIIVGGGMAGATLALALSRLSHGGL   30 (395)
T ss_pred             CcCCEEEECcCHHHHHHHHHhhhcccCCC
Confidence            468999999999999999999998   76

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=98.33  E-value=5.2e-07  Score=64.94  Aligned_cols=24  Identities=33%  Similarity=0.624  Sum_probs=22.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +||+||||||+|+++|+.|+++|+
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~   24 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGI   24 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCC
Confidence            699999999999999999999986

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=98.31  E-value=6.6e-07  Score=65.90  Aligned_cols=26  Identities=35%  Similarity=0.624  Sum_probs=24.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +.+||+||||||+|++||+.|+++|+
T Consensus         4 ~~~DViIVGaGpAG~~aA~~La~~G~   29 (428)
T PRK10157          4 DIFDAIIVGAGLAGSVAALVLAREGA   29 (428)
T ss_pred             ccCcEEEECcCHHHHHHHHHHHhCCC
Confidence            35999999999999999999999986

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=98.31  E-value=6.7e-07  Score=64.46  Aligned_cols=26  Identities=38%  Similarity=0.583  Sum_probs=24.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+||+||||||+|+++|+.|+++|+
T Consensus         3 ~~~dV~IvGaG~~Gl~~A~~L~~~G~   28 (405)
T PRK08850          3 QSVDVAIIGGGMVGLALAAALKESDL   28 (405)
T ss_pred             CcCCEEEECccHHHHHHHHHHHhCCC
Confidence            45899999999999999999999986

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=98.31  E-value=4.9e-07  Score=64.01  Aligned_cols=27  Identities=44%  Similarity=0.631  Sum_probs=22.8

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..++||+|||+||+||+||++|+++|+
T Consensus        15 ~~~~DV~IVGaGpaGl~aA~~La~~g~   41 (230)
T PF01946_consen   15 YLEYDVAIVGAGPAGLTAAYYLAKAGL   41 (230)
T ss_dssp             HTEESEEEE--SHHHHHHHHHHHHHTS
T ss_pred             hccCCEEEECCChhHHHHHHHHHHCCC
Confidence            356999999999999999999999886

>PRK06184 hypothetical protein; Provisional

Probab=98.30  E-value=7e-07  Score=66.40  Aligned_cols=27  Identities=52%  Similarity=0.824  Sum_probs=24.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGIF   68 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~~   68 (68)
                      .++||+||||||+||++|+.|+++|+.
T Consensus         2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~   28 (502)
T PRK06184          2 TTTDVLIVGAGPTGLTLAIELARRGVS   28 (502)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCc
Confidence            458999999999999999999999973

>PRK10015 oxidoreductase; Provisional

Probab=98.30  E-value=7.1e-07  Score=65.94  Aligned_cols=26  Identities=27%  Similarity=0.608  Sum_probs=24.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+||||||+|++||+.|+++|+
T Consensus         4 ~~~DViIVGgGpAG~~aA~~LA~~G~   29 (429)
T PRK10015          4 DKFDAIVVGAGVAGSVAALVMARAGL   29 (429)
T ss_pred             cccCEEEECcCHHHHHHHHHHHhCCC
Confidence            45999999999999999999999986

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.29  E-value=7.1e-07  Score=63.86  Aligned_cols=26  Identities=31%  Similarity=0.526  Sum_probs=24.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+||+||||||+|+++|+.|+++|+
T Consensus         5 ~~~dV~IvGaG~aGl~~A~~La~~G~   30 (392)
T PRK08773          5 SRRDAVIVGGGVVGAACALALADAGL   30 (392)
T ss_pred             CCCCEEEECcCHHHHHHHHHHhcCCC
Confidence            46899999999999999999999986

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.29  E-value=6.5e-07  Score=64.31  Aligned_cols=25  Identities=44%  Similarity=0.650  Sum_probs=23.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ++||+||||||+|+++|+.|+++|+
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~   26 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGSGL   26 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcCCC
Confidence            4799999999999999999999986

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.29  E-value=7.7e-07  Score=63.35  Aligned_cols=27  Identities=30%  Similarity=0.658  Sum_probs=24.6

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +..+||+||||||+|+++|+.|+++|+
T Consensus         5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~   31 (388)
T PRK07494          5 KEHTDIAVIGGGPAGLAAAIALARAGA   31 (388)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCC
Confidence            456899999999999999999999986

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.28  E-value=8.6e-07  Score=62.84  Aligned_cols=26  Identities=35%  Similarity=0.616  Sum_probs=24.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+||+||||||+|+++|+.|++.|+
T Consensus         4 ~~~dv~IvGgG~aGl~~A~~L~~~G~   29 (388)
T PRK07608          4 MKFDVVVVGGGLVGASLALALAQSGL   29 (388)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCC
Confidence            46899999999999999999999986

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.27  E-value=7.7e-07  Score=63.41  Aligned_cols=26  Identities=35%  Similarity=0.540  Sum_probs=24.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +++||+||||||+|+++|+.|+++|+
T Consensus         4 ~~~dViIvGgG~aGl~~A~~La~~G~   29 (391)
T PRK08020          4 QPTDIAIVGGGMVGAALALGLAQHGF   29 (391)
T ss_pred             ccccEEEECcCHHHHHHHHHHhcCCC
Confidence            46999999999999999999999986

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.27  E-value=6e-07  Score=64.33  Aligned_cols=27  Identities=44%  Similarity=0.668  Sum_probs=24.6

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+.||+|||+||+||+|||+|+++|+
T Consensus        28 ~~esDViIVGaGPsGLtAAyyLAk~g~   54 (262)
T COG1635          28 YLESDVIIVGAGPSGLTAAYYLAKAGL   54 (262)
T ss_pred             hhhccEEEECcCcchHHHHHHHHhCCc
Confidence            356899999999999999999999986

>PRK07045 putative monooxygenase; Reviewed

Probab=98.27  E-value=7.8e-07  Score=63.56  Aligned_cols=26  Identities=42%  Similarity=0.535  Sum_probs=24.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+||+||||||+||++|+.|+++|+
T Consensus         4 ~~~~V~IiGgGpaGl~~A~~L~~~G~   29 (388)
T PRK07045          4 NPVDVLINGSGIAGVALAHLLGARGH   29 (388)
T ss_pred             ceeEEEEECCcHHHHHHHHHHHhcCC
Confidence            45899999999999999999999986

>PRK06185 hypothetical protein; Provisional

Probab=98.26  E-value=1e-06  Score=63.08  Aligned_cols=26  Identities=38%  Similarity=0.828  Sum_probs=24.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+||||||+|+++|+.|+++|+
T Consensus         5 ~~~dV~IvGgG~~Gl~~A~~La~~G~   30 (407)
T PRK06185          5 ETTDCCIVGGGPAGMMLGLLLARAGV   30 (407)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC
Confidence            56999999999999999999999986

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=98.26  E-value=9.6e-07  Score=63.77  Aligned_cols=25  Identities=48%  Similarity=0.913  Sum_probs=23.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+||+||||||+||++|+.|+++|+
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~   26 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGL   26 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCC
Confidence            5799999999999999999999996

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.25  E-value=9.8e-07  Score=61.79  Aligned_cols=27  Identities=48%  Similarity=0.673  Sum_probs=24.7

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..++||+|||+||+|+++|+.|++.|+
T Consensus        23 ~~~~DVvIVGgGpAGl~AA~~la~~G~   49 (257)
T PRK04176         23 YLEVDVAIVGAGPSGLTAAYYLAKAGL   49 (257)
T ss_pred             hccCCEEEECccHHHHHHHHHHHhCCC
Confidence            456999999999999999999999886

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.24  E-value=1.3e-06  Score=65.27  Aligned_cols=27  Identities=33%  Similarity=0.530  Sum_probs=24.9

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+||+||||||+|+++|+.|+++|+
T Consensus        37 ~~~~DViIVGaGPAG~~aA~~LA~~G~   63 (450)
T PLN00093         37 GRKLRVAVIGGGPAGACAAETLAKGGI   63 (450)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCC
Confidence            456999999999999999999999986

>PRK08244 hypothetical protein; Provisional

Probab=98.24  E-value=1.1e-06  Score=65.06  Aligned_cols=25  Identities=44%  Similarity=0.779  Sum_probs=23.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ++||+||||||+||++|+.|+++|+
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~   26 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGV   26 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCC
Confidence            4899999999999999999999986

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.23  E-value=1.1e-06  Score=61.79  Aligned_cols=23  Identities=43%  Similarity=0.845  Sum_probs=22.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ||+||||||+|+++|+.|+++|+
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~   23 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGL   23 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCC
Confidence            79999999999999999999986

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK07236 hypothetical protein; Provisional

Probab=98.21  E-value=1.5e-06  Score=62.35  Aligned_cols=28  Identities=21%  Similarity=0.312  Sum_probs=25.2

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGIF   68 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~~   68 (68)
                      +...||+|||||++||++|+.|+++|+.
T Consensus         4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~   31 (386)
T PRK07236          4 MSGPRAVVIGGSLGGLFAALLLRRAGWD   31 (386)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCC
Confidence            4568999999999999999999999873

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.21  E-value=1.6e-06  Score=60.86  Aligned_cols=27  Identities=48%  Similarity=0.690  Sum_probs=24.6

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..++||+|||+||+||++|+.|+++|+
T Consensus        19 ~~~~DVvIVGgGpAGL~aA~~la~~G~   45 (254)
T TIGR00292        19 YAESDVIIVGAGPSGLTAAYYLAKNGL   45 (254)
T ss_pred             hcCCCEEEECCCHHHHHHHHHHHHCCC
Confidence            356999999999999999999999885

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=98.20  E-value=1.6e-06  Score=61.15  Aligned_cols=26  Identities=23%  Similarity=0.507  Sum_probs=24.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||||++|+++|++|+++|+
T Consensus         2 ~~~dv~IIGgGi~G~s~A~~L~~~g~   27 (376)
T PRK11259          2 MRYDVIVIGLGSMGSAAGYYLARRGL   27 (376)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCCC
Confidence            35899999999999999999999985

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=98.20  E-value=2.6e-06  Score=62.99  Aligned_cols=25  Identities=32%  Similarity=0.505  Sum_probs=23.2

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      +.++||+|||+|++|+++|++|+++
T Consensus        22 ~~~~DVvIIGgGi~Gls~A~~La~~   46 (460)
T TIGR03329        22 DTQADVCIVGGGFTGLWTAIMIKQQ   46 (460)
T ss_pred             CceeCEEEECCCHHHHHHHHHHHHh
Confidence            4568999999999999999999987

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK10262 thioredoxin reductase; Provisional

Probab=98.20  E-value=2e-06  Score=60.32  Aligned_cols=27  Identities=22%  Similarity=0.534  Sum_probs=24.6

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..++||+|||+||+||++|..|+++|+
T Consensus         4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~   30 (321)
T PRK10262          4 TKHSKLLILGSGPAGYTAAVYAARANL   30 (321)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCC
Confidence            457999999999999999999999885

>PRK06126 hypothetical protein; Provisional

Probab=98.19  E-value=1.7e-06  Score=64.86  Aligned_cols=27  Identities=52%  Similarity=0.912  Sum_probs=24.8

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+||+||||||+||++|+.|+++|+
T Consensus         5 ~~~~~VlIVGaGpaGL~~Al~La~~G~   31 (545)
T PRK06126          5 TSETPVLIVGGGPVGLALALDLGRRGV   31 (545)
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCC
Confidence            346899999999999999999999997

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=98.18  E-value=1.7e-06  Score=62.64  Aligned_cols=26  Identities=54%  Similarity=0.773  Sum_probs=24.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGIF   68 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~~   68 (68)
                      .+||+||||||+|+++|+.|+++|+.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~   27 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGID   27 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCC
Confidence            47999999999999999999999973

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=98.18  E-value=1.7e-06  Score=59.04  Aligned_cols=23  Identities=39%  Similarity=0.582  Sum_probs=22.0

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ||+|||+|++|+++|++|+++|+
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G~   23 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRGH   23 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTTS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC
Confidence            79999999999999999999986

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=98.18  E-value=1.4e-06  Score=61.59  Aligned_cols=23  Identities=57%  Similarity=0.967  Sum_probs=22.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHCC-C
Q 035312           45 PVLIVGAGPVGLVLSILLTKLG-I   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G-~   67 (68)
                      ||+||||||+|+++|+.|+++| +
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~   24 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKI   24 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCc
Confidence            7999999999999999999999 5

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK06847 hypothetical protein; Provisional

Probab=98.17  E-value=2e-06  Score=60.72  Aligned_cols=25  Identities=52%  Similarity=0.692  Sum_probs=23.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..||+||||||+||++|+.|++.|+
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~g~   28 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRAGI   28 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCC
Confidence            5799999999999999999999986

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.17  E-value=2e-06  Score=61.26  Aligned_cols=26  Identities=50%  Similarity=0.754  Sum_probs=24.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGIF   68 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~~   68 (68)
                      ..||+||||||+||++|+.|+++|+.
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~~g~~   29 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALARQGIK   29 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCc
Confidence            57999999999999999999999863

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.17  E-value=2e-06  Score=60.54  Aligned_cols=27  Identities=33%  Similarity=0.540  Sum_probs=24.6

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +.+.||+|||+|++|+++|++|+++|.
T Consensus         2 ~~~~~vvVIGgGi~Gls~A~~La~~G~   28 (387)
T COG0665           2 SMKMDVVIIGGGIVGLSAAYYLAERGA   28 (387)
T ss_pred             CCcceEEEECCcHHHHHHHHHHHHcCC
Confidence            356899999999999999999999984

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=98.16  E-value=2e-06  Score=61.87  Aligned_cols=26  Identities=50%  Similarity=0.715  Sum_probs=24.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGIF   68 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~~   68 (68)
                      ++||+||||||+||++|+.|+++|+.
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~~   27 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGID   27 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCCC
Confidence            47999999999999999999999873

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=98.15  E-value=3.8e-06  Score=63.19  Aligned_cols=28  Identities=54%  Similarity=0.833  Sum_probs=25.3

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGIF   68 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~~   68 (68)
                      +..+||+||||||+||++|+.|+++|+.
T Consensus        21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~   48 (547)
T PRK08132         21 PARHPVVVVGAGPVGLALAIDLAQQGVP   48 (547)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCc
Confidence            3568999999999999999999999863

>PRK07208 hypothetical protein; Provisional

Probab=98.15  E-value=2.5e-06  Score=62.61  Aligned_cols=26  Identities=42%  Similarity=0.627  Sum_probs=24.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +..||+|||||++||++|+.|+++|+
T Consensus         3 ~~~~vvIiGaGisGL~aA~~L~~~g~   28 (479)
T PRK07208          3 NKKSVVIIGAGPAGLTAAYELLKRGY   28 (479)
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCC
Confidence            46899999999999999999999886

>PRK07190 hypothetical protein; Provisional

Probab=98.15  E-value=2.3e-06  Score=64.35  Aligned_cols=26  Identities=46%  Similarity=0.742  Sum_probs=24.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+||+||||||+||++|+.|+++|+
T Consensus         4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi   29 (487)
T PRK07190          4 QVTDVVIIGAGPVGLMCAYLGQLCGL   29 (487)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCC
Confidence            45899999999999999999999986

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=98.14  E-value=2.5e-06  Score=60.25  Aligned_cols=24  Identities=38%  Similarity=0.551  Sum_probs=22.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +||+|||||++|+++|++|+++|.
T Consensus         1 ~dvvIIGaGi~G~s~A~~La~~g~   24 (380)
T TIGR01377         1 FDVIVVGAGIMGCFAAYHLAKHGK   24 (380)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCC
Confidence            599999999999999999999885

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.14  E-value=1.9e-06  Score=61.33  Aligned_cols=23  Identities=39%  Similarity=0.655  Sum_probs=21.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      +||+||||||+|+++|+.|+++|
T Consensus         2 ~dv~IvGaG~aGl~~A~~L~~~g   24 (403)
T PRK07333          2 CDVVIAGGGYVGLALAVALKQAA   24 (403)
T ss_pred             CCEEEECccHHHHHHHHHHhcCC
Confidence            79999999999999999999985

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.14  E-value=2.9e-06  Score=57.52  Aligned_cols=24  Identities=38%  Similarity=0.742  Sum_probs=22.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +||+|||||++||++|..|++.|+
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~   24 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANL   24 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCC
Confidence            589999999999999999999875

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK06753 hypothetical protein; Provisional

Probab=98.13  E-value=2.3e-06  Score=60.46  Aligned_cols=24  Identities=38%  Similarity=0.499  Sum_probs=22.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGIF   68 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~~   68 (68)
                      ||+||||||+||++|+.|+++|+.
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~   25 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHE   25 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCc
Confidence            799999999999999999999873

>PRK06996 hypothetical protein; Provisional

Probab=98.13  E-value=2.4e-06  Score=61.67  Aligned_cols=27  Identities=41%  Similarity=0.593  Sum_probs=24.2

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+||+||||||+|+++|+.|+++|+
T Consensus         9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~   35 (398)
T PRK06996          9 APDFDIAIVGAGPVGLALAGWLARRSA   35 (398)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCC
Confidence            356899999999999999999999873

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.12  E-value=2.8e-06  Score=62.19  Aligned_cols=26  Identities=31%  Similarity=0.500  Sum_probs=24.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +++||+|||+||+|+.+|+.|+++|+
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~la~~g~   27 (441)
T PRK08010          2 NKYQAVIIGFGKAGKTLAVTLAKAGW   27 (441)
T ss_pred             CcCCEEEECCCHhHHHHHHHHHHCCC
Confidence            35899999999999999999999885

>PRK06834 hypothetical protein; Provisional

Probab=98.12  E-value=2.8e-06  Score=63.90  Aligned_cols=26  Identities=38%  Similarity=0.623  Sum_probs=24.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+||||||+|+++|+.|+++|+
T Consensus         2 ~~~dVlIVGaGp~Gl~lA~~La~~G~   27 (488)
T PRK06834          2 TEHAVVIAGGGPTGLMLAGELALAGV   27 (488)
T ss_pred             CcceEEEECCCHHHHHHHHHHHHCCC
Confidence            45899999999999999999999986

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.12  E-value=2.4e-06  Score=61.25  Aligned_cols=24  Identities=25%  Similarity=0.562  Sum_probs=22.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .||+||||||+|+++|+.|+++|+
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G~   25 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGI   25 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCCC
Confidence            689999999999999999999986

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=98.09  E-value=2.9e-06  Score=62.29  Aligned_cols=24  Identities=46%  Similarity=0.764  Sum_probs=22.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHH----CCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTK----LGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~----~G~   67 (68)
                      +||+||||||+|+++|+.|++    +|+
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~   28 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDL   28 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCC
Confidence            699999999999999999998    675

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PLN02697 lycopene epsilon cyclase

Probab=98.09  E-value=5.4e-06  Score=63.72  Aligned_cols=27  Identities=33%  Similarity=0.775  Sum_probs=24.4

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+||+||||||+|+++|+.|+++|+
T Consensus       106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl  132 (529)
T PLN02697        106 DGTLDLVVIGCGPAGLALAAESAKLGL  132 (529)
T ss_pred             cCcccEEEECcCHHHHHHHHHHHhCCC
Confidence            345899999999999999999999986

>PLN02463 lycopene beta cyclase

Probab=98.09  E-value=5.9e-06  Score=62.08  Aligned_cols=27  Identities=33%  Similarity=0.741  Sum_probs=24.5

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+||+||||||+|+++|..|+++|+
T Consensus        26 ~~~~DVvIVGaGpAGLalA~~La~~Gl   52 (447)
T PLN02463         26 SRVVDLVVVGGGPAGLAVAQQVSEAGL   52 (447)
T ss_pred             ccCceEEEECCCHHHHHHHHHHHHCCC
Confidence            345899999999999999999999886

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.08  E-value=4e-06  Score=61.33  Aligned_cols=26  Identities=23%  Similarity=0.423  Sum_probs=24.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +++||+|||+||+|+++|..|++.|.
T Consensus         2 ~~~dvvVIG~GpaG~~aA~~l~~~g~   27 (438)
T PRK07251          2 LTYDLIVIGFGKAGKTLAAKLASAGK   27 (438)
T ss_pred             CccCEEEECCCHHHHHHHHHHHhCCC
Confidence            36899999999999999999999885

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=98.07  E-value=3.4e-06  Score=62.93  Aligned_cols=24  Identities=33%  Similarity=0.621  Sum_probs=19.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      |||+|||||||||+||+.++++|.
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g~   24 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKGA   24 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT-
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCC
Confidence            699999999999999999999885

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK06116 glutathione reductase; Validated

Probab=98.05  E-value=4.9e-06  Score=61.08  Aligned_cols=25  Identities=16%  Similarity=0.324  Sum_probs=23.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ++||+|||+||+|+++|..|+++|.
T Consensus         4 ~~DvvVIG~GpaG~~aA~~~a~~G~   28 (450)
T PRK06116          4 DYDLIVIGGGSGGIASANRAAMYGA   28 (450)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCC
Confidence            5899999999999999999999985

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.05  E-value=5e-06  Score=53.62  Aligned_cols=23  Identities=39%  Similarity=0.772  Sum_probs=21.2

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ||+|||+|++|+.+|..|++.++
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~   23 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGA   23 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTS
T ss_pred             CEEEEecHHHHHHHHHHHhcCCC
Confidence            79999999999999999998764

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.05  E-value=5e-06  Score=62.57  Aligned_cols=27  Identities=37%  Similarity=0.650  Sum_probs=24.6

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+||+||||||+||++|.+|++.|+
T Consensus       209 ~~~~dvvIIGgGpaGl~aA~~la~~G~  235 (517)
T PRK15317        209 KDPYDVLVVGGGPAGAAAAIYAARKGI  235 (517)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCC
Confidence            346899999999999999999999986

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=98.05  E-value=4e-06  Score=60.26  Aligned_cols=23  Identities=39%  Similarity=0.524  Sum_probs=21.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      .+|+|||||++||+||+.|+++|
T Consensus         1 ~~v~IVGaGiaGL~aA~~L~~~G   23 (451)
T PRK11883          1 KKVAIIGGGITGLSAAYRLHKKG   23 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhC
Confidence            36999999999999999999987

>PLN02576 protoporphyrinogen oxidase

Probab=98.05  E-value=6.5e-06  Score=60.65  Aligned_cols=27  Identities=33%  Similarity=0.497  Sum_probs=24.0

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHC-CC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKL-GI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~-G~   67 (68)
                      ..++||+|||||++||++|+.|+++ |+
T Consensus        10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~   37 (496)
T PLN02576         10 ASSKDVAVVGAGVSGLAAAYALASKHGV   37 (496)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHhcCC
Confidence            3457999999999999999999998 65

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=98.05  E-value=5e-06  Score=58.76  Aligned_cols=24  Identities=33%  Similarity=0.588  Sum_probs=22.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +||+|||+|++|+++|++|+++|.
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~G~   24 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARRGL   24 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC
Confidence            599999999999999999999885

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>TIGR02028 ChlP geranylgeranyl reductase

Probab=98.05  E-value=4.6e-06  Score=60.86  Aligned_cols=24  Identities=38%  Similarity=0.631  Sum_probs=22.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .||+||||||+|+++|+.|+++|+
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~   24 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGI   24 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCC
Confidence            489999999999999999999986

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK07588 hypothetical protein; Provisional

Probab=98.04  E-value=4.6e-06  Score=59.68  Aligned_cols=24  Identities=38%  Similarity=0.531  Sum_probs=22.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .||+||||||+||++|+.|+++|+
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G~   24 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYGH   24 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCC
Confidence            389999999999999999999986

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=98.04  E-value=5.5e-06  Score=62.33  Aligned_cols=27  Identities=52%  Similarity=0.812  Sum_probs=24.7

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +.++||+|||+||+||++|+.|+++|+
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~   34 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQYGV   34 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCC
Confidence            356899999999999999999999986

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=98.03  E-value=4.8e-06  Score=64.66  Aligned_cols=26  Identities=50%  Similarity=0.784  Sum_probs=23.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHC-CC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKL-GI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~-G~   67 (68)
                      .++||+||||||+||++|+.|++. |+
T Consensus        31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi   57 (634)
T PRK08294         31 DEVDVLIVGCGPAGLTLAAQLSAFPDI   57 (634)
T ss_pred             CCCCEEEECCCHHHHHHHHHHhcCCCC
Confidence            468999999999999999999994 86

>PRK07538 hypothetical protein; Provisional

Probab=98.03  E-value=5e-06  Score=60.22  Aligned_cols=24  Identities=46%  Similarity=0.634  Sum_probs=22.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGIF   68 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~~   68 (68)
                      ||+||||||+||++|+.|+++|+.
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~G~~   25 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRGIE   25 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCc
Confidence            899999999999999999999863

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.02  E-value=5.9e-06  Score=60.59  Aligned_cols=27  Identities=26%  Similarity=0.437  Sum_probs=24.5

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +..+||+|||+||+|+.+|+.|++.|.
T Consensus         3 ~~~yDvvVIGaGpaG~~aA~~la~~G~   29 (461)
T PRK05249          3 MYDYDLVVIGSGPAGEGAAMQAAKLGK   29 (461)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCC
Confidence            346999999999999999999999885

>PRK07233 hypothetical protein; Provisional

Probab=98.02  E-value=5.7e-06  Score=58.96  Aligned_cols=23  Identities=39%  Similarity=0.546  Sum_probs=21.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +|+|||||++||++|+.|+++|+
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~   23 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGH   23 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Confidence            68999999999999999999885

>PRK06475 salicylate hydroxylase; Provisional

Probab=98.02  E-value=6.2e-06  Score=59.50  Aligned_cols=25  Identities=36%  Similarity=0.418  Sum_probs=23.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGIF   68 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~~   68 (68)
                      .+|+||||||+||++|+.|+++|+.
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~   27 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWA   27 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCc
Confidence            6899999999999999999999863

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.02  E-value=6.1e-06  Score=60.50  Aligned_cols=26  Identities=38%  Similarity=0.623  Sum_probs=24.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||+||+|+++|..|++.|.
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~~g~   27 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAKLGK   27 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCCC
Confidence            45999999999999999999999885

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.02  E-value=5.5e-06  Score=58.99  Aligned_cols=23  Identities=30%  Similarity=0.819  Sum_probs=21.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ||+||||||+|+++|+.|+++|+
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~   23 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGL   23 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCC
Confidence            89999999999999999999885

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.01  E-value=6.3e-06  Score=62.78  Aligned_cols=25  Identities=28%  Similarity=0.642  Sum_probs=23.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+||+||||||+||++|..|+++|+
T Consensus         4 ~yDVvIIGgGpAGL~AA~~lar~g~   28 (555)
T TIGR03143         4 IYDLIIIGGGPAGLSAGIYAGRAKL   28 (555)
T ss_pred             cCcEEEECCCHHHHHHHHHHHHCCC
Confidence            4899999999999999999999875

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK06370 mercuric reductase; Validated

Probab=98.01  E-value=6.4e-06  Score=60.74  Aligned_cols=27  Identities=26%  Similarity=0.453  Sum_probs=24.6

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +.++||+|||+||+|+++|+.|++.|.
T Consensus         3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~   29 (463)
T PRK06370          3 AQRYDAIVIGAGQAGPPLAARAAGLGM   29 (463)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCC
Confidence            346999999999999999999999886

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.00  E-value=6.6e-06  Score=61.13  Aligned_cols=26  Identities=38%  Similarity=0.623  Sum_probs=23.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||+||+|+.+|..++++|.
T Consensus         2 ~~~DvvVIG~GpaG~~AA~~aa~~G~   27 (466)
T PRK06115          2 ASYDVVIIGGGPGGYNAAIRAGQLGL   27 (466)
T ss_pred             CcccEEEECCCHHHHHHHHHHHhCCC
Confidence            35899999999999999999999885

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.00  E-value=6.5e-06  Score=61.01  Aligned_cols=25  Identities=20%  Similarity=0.328  Sum_probs=23.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ++||+|||+||+|+.+|..+++.|.
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~   26 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAEHGA   26 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC
Confidence            5899999999999999999999985

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.00  E-value=6e-06  Score=60.86  Aligned_cols=25  Identities=24%  Similarity=0.401  Sum_probs=23.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ++||+|||+||+|+++|+.++++|+
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~   26 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGA   26 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCC
Confidence            5899999999999999999999986

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.99  E-value=7.1e-06  Score=61.80  Aligned_cols=27  Identities=33%  Similarity=0.586  Sum_probs=24.6

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+||+||||||+|+++|..|++.|+
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~~G~  236 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAARKGL  236 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCC
Confidence            346999999999999999999999886

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.99  E-value=6.3e-06  Score=61.99  Aligned_cols=26  Identities=35%  Similarity=0.666  Sum_probs=24.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+||+|||||+.||+||..|+++|+
T Consensus         2 ~~~dvvVIGaG~~GL~aAa~LA~~G~   27 (487)
T COG1233           2 PMYDVVVIGAGLNGLAAAALLARAGL   27 (487)
T ss_pred             CCccEEEECCChhHHHHHHHHHhCCC
Confidence            45899999999999999999999996

>PRK11445 putative oxidoreductase; Provisional

Probab=97.97  E-value=6.8e-06  Score=58.69  Aligned_cols=22  Identities=41%  Similarity=0.605  Sum_probs=20.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHHC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      +||+||||||+|+++|+.|++.
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~~   23 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAGK   23 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhcc
Confidence            7999999999999999999886

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=97.97  E-value=8.5e-06  Score=60.96  Aligned_cols=28  Identities=32%  Similarity=0.484  Sum_probs=25.4

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGIF   68 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~~   68 (68)
                      .+++||+|||||++||++|+.|.+.|+.
T Consensus         6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~   33 (443)
T COG2072           6 ATHTDVAIIGAGQSGLAAAYALKQAGVP   33 (443)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCC
Confidence            4679999999999999999999999863

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=97.97  E-value=8.7e-06  Score=59.90  Aligned_cols=26  Identities=27%  Similarity=0.543  Sum_probs=24.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||+|++|+++|+.++++|.
T Consensus         3 ~~~DVvVVG~G~aGl~AA~~aa~~G~   28 (466)
T PRK08274          3 SMVDVLVIGGGNAALCAALAAREAGA   28 (466)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCC
Confidence            46899999999999999999999885

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.96  E-value=8.8e-06  Score=62.33  Aligned_cols=28  Identities=29%  Similarity=0.426  Sum_probs=25.3

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGIF   68 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~~   68 (68)
                      ...++|+|||||+|||+||.+|++.|+.
T Consensus        13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~   40 (501)
T KOG0029|consen   13 GKKKKVIVIGAGLAGLSAARQLQDFGFD   40 (501)
T ss_pred             cCCCcEEEECCcHHHHHHHHHHHHcCCc
Confidence            4568999999999999999999999863

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=97.96  E-value=1.4e-05  Score=57.48  Aligned_cols=26  Identities=38%  Similarity=0.575  Sum_probs=23.5

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHC-C
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKL-G   66 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~-G   66 (68)
                      ..++||+|||||++|+++|++|+++ |
T Consensus        28 ~~~~dvvIIGgGi~G~s~A~~L~~~~g   54 (407)
T TIGR01373        28 KPTYDVIIVGGGGHGLATAYYLAKEHG   54 (407)
T ss_pred             CccCCEEEECCcHHHHHHHHHHHHhcC
Confidence            3568999999999999999999985 7

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=97.95  E-value=8e-06  Score=61.78  Aligned_cols=26  Identities=38%  Similarity=0.663  Sum_probs=24.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +.+||+|||||||||+||..++++|.
T Consensus         2 ~~~dviIIGgGpAGlMaA~~aa~~G~   27 (408)
T COG2081           2 ERFDVIIIGGGPAGLMAAISAAKAGR   27 (408)
T ss_pred             CcceEEEECCCHHHHHHHHHHhhcCC
Confidence            46899999999999999999999885

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.95  E-value=9.6e-06  Score=59.62  Aligned_cols=26  Identities=38%  Similarity=0.671  Sum_probs=24.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||+||+|+.+|..|+++|.
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~   28 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGL   28 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCC
Confidence            46999999999999999999999885

>PRK07121 hypothetical protein; Validated

Probab=97.95  E-value=1.6e-05  Score=59.28  Aligned_cols=27  Identities=26%  Similarity=0.409  Sum_probs=24.6

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..++||+|||+|.+||++|+.++++|.
T Consensus        18 ~~~~DVvVVGaG~AGl~AA~~aae~G~   44 (492)
T PRK07121         18 DDEADVVVVGFGAAGACAAIEAAAAGA   44 (492)
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCC
Confidence            457999999999999999999999884

>PLN02268 probable polyamine oxidase

Probab=97.94  E-value=9.2e-06  Score=58.96  Aligned_cols=24  Identities=21%  Similarity=0.451  Sum_probs=22.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+|+|||||++||+||+.|.++|+
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~   24 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASF   24 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCC
Confidence            479999999999999999999885

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=97.94  E-value=9.5e-06  Score=59.40  Aligned_cols=24  Identities=38%  Similarity=0.744  Sum_probs=22.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +||+|||+||+|+.+|..|++.|.
T Consensus         2 yDvvVIG~G~aGl~aA~~la~~G~   25 (461)
T TIGR01350         2 YDVVVIGGGPGGYVAAIRAAQLGL   25 (461)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCC
Confidence            899999999999999999999885

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK14694 putative mercuric reductase; Provisional

Probab=97.93  E-value=1.1e-05  Score=59.72  Aligned_cols=27  Identities=15%  Similarity=0.382  Sum_probs=24.8

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..++||+|||+||+|+++|..|++.|.
T Consensus         4 ~~~~dviVIGaG~aG~~aA~~l~~~g~   30 (468)
T PRK14694          4 DNNLHIAVIGSGGSAMAAALKATERGA   30 (468)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCC
Confidence            457999999999999999999999885

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=97.92  E-value=1e-05  Score=58.22  Aligned_cols=25  Identities=32%  Similarity=0.566  Sum_probs=22.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHC--CC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKL--GI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~--G~   67 (68)
                      .+||+|||||++|+++|++|+++  |.
T Consensus         2 ~~dVvIIGgGi~G~s~A~~La~~~~g~   28 (393)
T PRK11728          2 MYDFVIIGGGIVGLSTAMQLQERYPGA   28 (393)
T ss_pred             CccEEEECCcHHHHHHHHHHHHhCCCC
Confidence            37999999999999999999998  64

>PRK05868 hypothetical protein; Validated

Probab=97.92  E-value=1.1e-05  Score=58.24  Aligned_cols=24  Identities=25%  Similarity=0.375  Sum_probs=22.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .||+||||||+|+++|+.|+++|+
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~   25 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGY   25 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCC
Confidence            489999999999999999999986

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=97.91  E-value=1.2e-05  Score=59.57  Aligned_cols=26  Identities=35%  Similarity=0.627  Sum_probs=24.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+||+|||+||+|+.+|..|++.|.
T Consensus         3 ~~ydvvVIG~GpaG~~aA~~aa~~G~   28 (472)
T PRK05976          3 KEYDLVIIGGGPGGYVAAIRAGQLGL   28 (472)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC
Confidence            46999999999999999999999885

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=97.91  E-value=1.2e-05  Score=58.49  Aligned_cols=22  Identities=36%  Similarity=0.511  Sum_probs=21.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHHC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      .||+|||||++||++|+.|+++
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~   24 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKE   24 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhc
Confidence            6899999999999999999998

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=97.90  E-value=1.2e-05  Score=59.45  Aligned_cols=24  Identities=42%  Similarity=0.696  Sum_probs=22.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .||+|||+|++||++|..|+++|+
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~   25 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGY   25 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCC
Confidence            689999999999999999999986

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=97.89  E-value=1.3e-05  Score=57.74  Aligned_cols=24  Identities=25%  Similarity=0.488  Sum_probs=22.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +||+|||+|++|+++|++|+++|.
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~   25 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGY   25 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC
Confidence            599999999999999999999885

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=97.88  E-value=1.6e-05  Score=59.90  Aligned_cols=26  Identities=35%  Similarity=0.479  Sum_probs=24.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..++|+|||||++||++|.+|.++|+
T Consensus         9 ~~~~VaIIGAG~aGL~aA~~l~~~G~   34 (461)
T PLN02172          9 NSQHVAVIGAGAAGLVAARELRREGH   34 (461)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCC
Confidence            45899999999999999999999985

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=97.88  E-value=1.8e-05  Score=62.65  Aligned_cols=27  Identities=33%  Similarity=0.518  Sum_probs=24.8

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....+|+||||||+||++|+.|+++|+
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi  105 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKKKGF  105 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhcCC
Confidence            456899999999999999999999986

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.88  E-value=1.5e-05  Score=58.94  Aligned_cols=25  Identities=40%  Similarity=0.696  Sum_probs=23.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ++||+|||+||+|+.+|..|++.|.
T Consensus         4 ~~DvvIIG~GpaG~~AA~~aa~~G~   28 (466)
T PRK07818          4 HYDVVVLGAGPGGYVAAIRAAQLGL   28 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC
Confidence            5899999999999999999999875

>PLN02661 Putative thiazole synthesis

Probab=97.88  E-value=9.9e-06  Score=60.22  Aligned_cols=26  Identities=42%  Similarity=0.544  Sum_probs=22.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHC-CC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKL-GI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~-G~   67 (68)
                      .++||+|||+|++|+++|++|+++ |+
T Consensus        91 ~~~DVlIVGaG~AGl~AA~~La~~~g~  117 (357)
T PLN02661         91 ADTDVVIVGAGSAGLSCAYELSKNPNV  117 (357)
T ss_pred             ccCCEEEECCHHHHHHHHHHHHHcCCC
Confidence            468999999999999999999975 53

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=97.88  E-value=1.3e-05  Score=65.03  Aligned_cols=26  Identities=38%  Similarity=0.722  Sum_probs=24.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..++|+|||+|||||+||+.|+++|+
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~  330 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGF  330 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC
Confidence            46899999999999999999999986

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=97.87  E-value=1.5e-05  Score=57.29  Aligned_cols=23  Identities=30%  Similarity=0.569  Sum_probs=21.0

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ||+|||+|++||+||+.++++|.
T Consensus         1 DVvVIG~G~AGl~AA~~Aae~G~   23 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAEAGA   23 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHHTTT
T ss_pred             CEEEECCCHHHHHHHHHHhhhcC
Confidence            89999999999999999999985

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=97.86  E-value=1.1e-05  Score=61.80  Aligned_cols=58  Identities=28%  Similarity=0.357  Sum_probs=40.0

Q ss_pred             eeeeceeeeeeecCCcCCccccccCCCCCCCcccccCccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312            4 VAFTRRLNCFSRIKTFPYPYGYTPCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ++|.+.|..++.+++....      ............+..+||+|||||.+|-++|+.|+|.|.
T Consensus        12 ~af~l~~~~~~~~~~~~~a------~~~~~~~~~~~~~~~~DvIIVGAGV~GsaLa~~L~kdGR   69 (509)
T KOG1298|consen   12 LAFVLTWTVFYLTKRKKKA------TNVAETSVEARNDGAADVIIVGAGVAGSALAYALAKDGR   69 (509)
T ss_pred             HHHHhhheeeecccccccc------cccchhhhhhccCCcccEEEECCcchHHHHHHHHhhCCc
Confidence            5788899999877772211      111111111123456899999999999999999999984

>PTZ00367 squalene epoxidase; Provisional

Probab=97.85  E-value=1.6e-05  Score=61.42  Aligned_cols=26  Identities=38%  Similarity=0.418  Sum_probs=24.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+||||||+|+++|+.|+++|+
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar~G~   57 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSKQGR   57 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHhcCC
Confidence            46899999999999999999999986

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=97.85  E-value=1.5e-05  Score=62.75  Aligned_cols=26  Identities=23%  Similarity=0.477  Sum_probs=24.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||||+||+.||+.+++.|.
T Consensus         3 ~~yDVIVVGGGpAG~eAA~~aAR~G~   28 (618)
T PRK05192          3 EEYDVIVVGGGHAGCEAALAAARMGA   28 (618)
T ss_pred             ccceEEEECchHHHHHHHHHHHHcCC
Confidence            45999999999999999999999986

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=97.85  E-value=1.3e-05  Score=58.00  Aligned_cols=23  Identities=52%  Similarity=0.879  Sum_probs=20.3

Q ss_pred             CEEEECCCHHHHHHHHHH--HHCCC
Q 035312           45 PVLIVGAGPVGLVLSILL--TKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L--~~~G~   67 (68)
                      ||+||||||||+++|+.|  ++.|.
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~   25 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGL   25 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCC
Confidence            899999999999999999  55553

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>TIGR02053 MerA mercuric reductase

Probab=97.85  E-value=1.8e-05  Score=58.35  Aligned_cols=24  Identities=25%  Similarity=0.534  Sum_probs=22.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +||+|||+||+|+.+|..++++|.
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~   24 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGA   24 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC
Confidence            699999999999999999999885

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK12831 putative oxidoreductase; Provisional

Probab=97.83  E-value=2e-05  Score=58.92  Aligned_cols=27  Identities=33%  Similarity=0.541  Sum_probs=24.5

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+||+|||+||+||++|+.|++.|+
T Consensus       138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~  164 (464)
T PRK12831        138 KKGKKVAVIGSGPAGLTCAGDLAKMGY  164 (464)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCC
Confidence            356899999999999999999999986

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.83  E-value=2e-05  Score=59.10  Aligned_cols=26  Identities=15%  Similarity=0.286  Sum_probs=24.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||||++|+++|+.|+++|+
T Consensus         5 ~~~DVvIIGGGi~G~~~A~~la~rG~   30 (502)
T PRK13369          5 ETYDLFVIGGGINGAGIARDAAGRGL   30 (502)
T ss_pred             cccCEEEECCCHHHHHHHHHHHhCCC
Confidence            45899999999999999999999986

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.82  E-value=2.5e-05  Score=60.85  Aligned_cols=43  Identities=23%  Similarity=0.193  Sum_probs=30.4

Q ss_pred             cccccCCCCCCCcccccCccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           23 YGYTPCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .|.-..|.....+.  .+..++||+|||+|.|||+||+.+++.|.
T Consensus        17 ~~~~~~~~~~~~~~--~~~~~~DVlVVG~G~AGl~AAi~Aae~G~   59 (640)
T PRK07573         17 KWDRYKFHLKLVNP--ANKRKFDVIVVGTGLAGASAAATLGELGY   59 (640)
T ss_pred             hhhhccccccccCC--ccccccCEEEECccHHHHHHHHHHHHcCC
Confidence            34344454433321  12356899999999999999999999875

>PLN02815 L-aspartate oxidase

Probab=97.81  E-value=2.6e-05  Score=60.45  Aligned_cols=26  Identities=23%  Similarity=0.511  Sum_probs=23.6

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ..++||+|||+|.|||+||+.+++.|
T Consensus        27 ~~~~DVlVVG~G~AGl~AAl~Aae~G   52 (594)
T PLN02815         27 TKYFDFLVIGSGIAGLRYALEVAEYG   52 (594)
T ss_pred             ccccCEEEECccHHHHHHHHHHhhCC
Confidence            45689999999999999999999876

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=97.81  E-value=1.7e-05  Score=58.52  Aligned_cols=23  Identities=35%  Similarity=0.729  Sum_probs=20.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ||+||||||+|++||+.+++.|.
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~   23 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGA   23 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS
T ss_pred             CEEEECccHHHHHHHHHHHHCCC
Confidence            89999999999999999999985

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=97.81  E-value=1.8e-05  Score=56.65  Aligned_cols=23  Identities=26%  Similarity=0.576  Sum_probs=21.9

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ||+|||||++|+++|++|+++|.
T Consensus         2 ~v~IVG~Gi~Gls~A~~l~~~g~   24 (416)
T PRK00711          2 RVVVLGSGVIGVTSAWYLAQAGH   24 (416)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCC
Confidence            79999999999999999999886

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=97.81  E-value=1.8e-05  Score=58.01  Aligned_cols=22  Identities=36%  Similarity=0.605  Sum_probs=20.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHHC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      ++|+|||||++||++|+.|++.
T Consensus         2 ~~v~VIGaGisGL~aA~~L~~~   23 (463)
T PRK12416          2 KTVVVIGGGITGLSTMFYLEKL   23 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHhh
Confidence            4699999999999999999986

>PRK13748 putative mercuric reductase; Provisional

Probab=97.80  E-value=2.4e-05  Score=58.75  Aligned_cols=26  Identities=15%  Similarity=0.357  Sum_probs=24.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||+||+|+.+|..|++.|.
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~  122 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGA  122 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCC
Confidence            35899999999999999999999885

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=97.80  E-value=2.2e-05  Score=64.61  Aligned_cols=26  Identities=35%  Similarity=0.653  Sum_probs=24.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..++|+|||||||||+||+.|+++|+
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~G~  561 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARAGH  561 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC
Confidence            45899999999999999999999986

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.77  E-value=2.6e-05  Score=58.79  Aligned_cols=25  Identities=16%  Similarity=0.355  Sum_probs=23.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+||+|||+||+|+.+|..++++|.
T Consensus         5 ~yDviVIG~GpaG~~AA~~aa~~G~   29 (499)
T PTZ00052          5 MYDLVVIGGGSGGMAAAKEAAAHGK   29 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCC
Confidence            4899999999999999999999885

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=97.77  E-value=2.5e-05  Score=58.06  Aligned_cols=26  Identities=38%  Similarity=0.703  Sum_probs=23.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|++|||+||+|+++|+.+++.|.
T Consensus         3 ~~~DviIIG~G~aG~~aA~~~~~~g~   28 (475)
T PRK06327          3 KQFDVVVIGAGPGGYVAAIRAAQLGL   28 (475)
T ss_pred             cceeEEEECCCHHHHHHHHHHHhCCC
Confidence            35899999999999999999999885

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=97.77  E-value=2.9e-05  Score=58.48  Aligned_cols=27  Identities=30%  Similarity=0.502  Sum_probs=24.5

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +.++||+|||+|.+|+++|+.++++|.
T Consensus        59 ~~~~DVvVVG~G~AGl~AAi~Aa~~Ga   85 (506)
T PRK06481         59 KDKYDIVIVGAGGAGMSAAIEAKDAGM   85 (506)
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHCCC
Confidence            357899999999999999999999885

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=97.76  E-value=3e-05  Score=58.51  Aligned_cols=26  Identities=19%  Similarity=0.312  Sum_probs=24.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+||+|||||++|+++|+.|+++|+
T Consensus         5 ~~~DVvIIGGGi~G~~~A~~la~rGl   30 (508)
T PRK12266          5 ETYDLLVIGGGINGAGIARDAAGRGL   30 (508)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCC
Confidence            45999999999999999999999986

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=97.76  E-value=2.7e-05  Score=60.19  Aligned_cols=25  Identities=28%  Similarity=0.490  Sum_probs=23.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..||+|||||++|+++|++|+++|+
T Consensus       260 ~~dVvIIGaGIaG~s~A~~La~~G~  284 (662)
T PRK01747        260 ARDAAIIGGGIAGAALALALARRGW  284 (662)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCC
Confidence            4799999999999999999999985

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.75  E-value=3.2e-05  Score=57.62  Aligned_cols=26  Identities=31%  Similarity=0.620  Sum_probs=24.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||+||+|+.+|..+++.|.
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~aa~~G~   28 (471)
T PRK06467          3 IKTQVVVLGAGPAGYSAAFRAADLGL   28 (471)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCC
Confidence            35999999999999999999999885

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=97.75  E-value=2.6e-05  Score=56.39  Aligned_cols=22  Identities=36%  Similarity=0.579  Sum_probs=21.0

Q ss_pred             CEEEECCCHHHHHHHHHHHHCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      +|+|||||++||++|+.|+++|
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g   23 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHS   23 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcC
Confidence            6999999999999999999987

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=97.74  E-value=3.3e-05  Score=58.86  Aligned_cols=26  Identities=23%  Similarity=0.364  Sum_probs=24.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+||+|||||++|+++|+.|+++|+
T Consensus         5 ~~~DVvIIGGGi~G~~iA~~La~rG~   30 (546)
T PRK11101          5 QETDVIIIGGGATGAGIARDCALRGL   30 (546)
T ss_pred             ccccEEEECcCHHHHHHHHHHHHcCC
Confidence            46999999999999999999999986

>TIGR02731 phytoene_desat phytoene desaturase

Probab=97.74  E-value=3.3e-05  Score=56.48  Aligned_cols=23  Identities=39%  Similarity=0.497  Sum_probs=21.6

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +|+|||+|++||++|+.|+++|+
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~   23 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGH   23 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Confidence            58999999999999999999986

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.74  E-value=3e-05  Score=60.01  Aligned_cols=26  Identities=38%  Similarity=0.648  Sum_probs=24.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..++|+|||+||+||++|+.|++.|+
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~  351 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGV  351 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC
Confidence            45799999999999999999999986

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=97.74  E-value=4.8e-05  Score=58.40  Aligned_cols=55  Identities=27%  Similarity=0.269  Sum_probs=35.1

Q ss_pred             eeeeecCCcCCccccccCCCCCCCcccccC-ccccCEEEECCCHHHHHHHHHHHHC
Q 035312           11 NCFSRIKTFPYPYGYTPCRALSDSKTIVSN-EAVVPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      +.+++.|++.-+.+.+++-...+....... ...+||+||||||+|+++|..|..+
T Consensus         3 ~r~~~~~~~vr~v~~t~~~~~~~~~s~~~~~~~~~dVvIvGgGpvg~aLAa~l~sn   58 (481)
T KOG3855|consen    3 TRITVRMSRVRAVRYTQRLDTRRTASAKSTDTAKYDVVIVGGGPVGLALAAALGSN   58 (481)
T ss_pred             ceeeeccccccccccccccccccccccccCCcccCCEEEECCchHHHHHHHHhccC
Confidence            455566664444445554444333322222 3479999999999999999988754

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=97.74  E-value=3.3e-05  Score=58.78  Aligned_cols=24  Identities=38%  Similarity=0.560  Sum_probs=22.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .||+|||||++|+.+|+.|+++|+
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl   26 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGV   26 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCC
Confidence            699999999999999999999986

>PLN02852 ferredoxin-NADP+ reductase

Probab=97.72  E-value=5.4e-05  Score=57.93  Aligned_cols=27  Identities=33%  Similarity=0.477  Sum_probs=23.0

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHH--CCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTK--LGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~--~G~   67 (68)
                      ....+|+|||+|||||.||..|++  .|+
T Consensus        24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~   52 (491)
T PLN02852         24 SEPLHVCVVGSGPAGFYTADKLLKAHDGA   52 (491)
T ss_pred             CCCCcEEEECccHHHHHHHHHHHhhCCCC
Confidence            346799999999999999999986  454

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=97.71  E-value=3.8e-05  Score=63.37  Aligned_cols=27  Identities=33%  Similarity=0.576  Sum_probs=24.8

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...++|+|||+|||||++|+.|+++|+
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh  407 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRSGH  407 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCC
Confidence            356899999999999999999999986

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=97.71  E-value=3.3e-05  Score=59.48  Aligned_cols=25  Identities=36%  Similarity=0.438  Sum_probs=23.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGIF   68 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~~   68 (68)
                      .+|+|+|||+|||+||++|+++|++
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~~   25 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGYD   25 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCc
Confidence            3799999999999999999999974

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=97.70  E-value=4.2e-05  Score=58.41  Aligned_cols=27  Identities=41%  Similarity=0.667  Sum_probs=24.6

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..++||+|||+|++||++|+.++++|.
T Consensus         7 ~~~~DVvVVG~G~aGl~AA~~aa~~G~   33 (574)
T PRK12842          7 ELTCDVLVIGSGAGGLSAAITARKLGL   33 (574)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHcCC
Confidence            457999999999999999999999885

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.70  E-value=4e-05  Score=58.20  Aligned_cols=27  Identities=33%  Similarity=0.447  Sum_probs=24.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGIF   68 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~~   68 (68)
                      ...+|+|||||+|||.+|..|.+.|+.
T Consensus         5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~   31 (448)
T KOG1399|consen    5 MSKDVAVIGAGPAGLAAARELLREGHE   31 (448)
T ss_pred             CCCceEEECcchHHHHHHHHHHHCCCC
Confidence            468999999999999999999999863

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.70  E-value=3.4e-05  Score=59.05  Aligned_cols=25  Identities=28%  Similarity=0.414  Sum_probs=22.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      .++||+|||+|.|||+||+.++++|
T Consensus         2 ~~~DVlVIG~G~AGl~AAi~aa~~g   26 (575)
T PRK05945          2 LEHDVVIVGGGLAGCRAALEIKRLD   26 (575)
T ss_pred             CcccEEEECccHHHHHHHHHHHHhc
Confidence            4589999999999999999998764

>TIGR02730 carot_isom carotene isomerase

Probab=97.70  E-value=4.1e-05  Score=57.02  Aligned_cols=24  Identities=29%  Similarity=0.472  Sum_probs=22.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +||+|||+|++||++|..|+++|.
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~~G~   24 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAVKGA   24 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCC
Confidence            589999999999999999999986

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=97.69  E-value=3.9e-05  Score=62.63  Aligned_cols=26  Identities=38%  Similarity=0.621  Sum_probs=24.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..++|+|||+|||||++|++|+++|+
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~G~  454 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKYGV  454 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC
Confidence            35799999999999999999999986

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.68  E-value=4.4e-05  Score=61.88  Aligned_cols=26  Identities=42%  Similarity=0.715  Sum_probs=24.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+||+|||||||||++|+.+++.|+
T Consensus       162 ~~~dVvIIGaGPAGLaAA~~aar~G~  187 (985)
T TIGR01372       162 AHCDVLVVGAGPAGLAAALAAARAGA  187 (985)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCC
Confidence            45899999999999999999999886

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=97.68  E-value=4.8e-05  Score=57.43  Aligned_cols=26  Identities=27%  Similarity=0.475  Sum_probs=23.7

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +.++||+|||+| +||++|+.++++|.
T Consensus         5 d~~~DVvVVG~G-aGl~aA~~aa~~G~   30 (513)
T PRK12837          5 DEEVDVLVAGSG-GGVAGAYTAAREGL   30 (513)
T ss_pred             CCccCEEEECch-HHHHHHHHHHHCCC
Confidence            457999999999 99999999999885

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.68  E-value=4.6e-05  Score=58.70  Aligned_cols=26  Identities=35%  Similarity=0.571  Sum_probs=23.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...||+|||+|.|||+||+.++++|.
T Consensus         2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~   27 (589)
T PRK08641          2 AKGKVIVVGGGLAGLMATIKAAEAGV   27 (589)
T ss_pred             CCccEEEECchHHHHHHHHHHHHcCC
Confidence            35799999999999999999999875

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.67  E-value=4.6e-05  Score=58.80  Aligned_cols=26  Identities=31%  Similarity=0.534  Sum_probs=23.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||+|.|||+||+.+++.|.
T Consensus        11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~   36 (598)
T PRK09078         11 HKYDVVVVGAGGAGLRATLGMAEAGL   36 (598)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCC
Confidence            46899999999999999999998874

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=97.67  E-value=4.2e-05  Score=55.71  Aligned_cols=23  Identities=26%  Similarity=0.524  Sum_probs=21.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHC--CC
Q 035312           45 PVLIVGAGPVGLVLSILLTKL--GI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~--G~   67 (68)
                      ||+|||||++|+++|+.|+++  |+
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~   25 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDF   25 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCC
Confidence            899999999999999999986  64

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.67  E-value=4.6e-05  Score=59.87  Aligned_cols=26  Identities=35%  Similarity=0.516  Sum_probs=24.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+||+|||+|||||++|..|+++|+
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~G~  455 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKRGY  455 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC
Confidence            45799999999999999999999886

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=97.67  E-value=5.5e-05  Score=57.72  Aligned_cols=25  Identities=40%  Similarity=0.551  Sum_probs=22.7

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      +..+||+|||||+.|+++|++|++.
T Consensus        43 ~~~~DVvIIGGGI~G~a~A~~La~~   67 (497)
T PTZ00383         43 SDVYDVVIVGGGVTGTALFYTLSKF   67 (497)
T ss_pred             CCcccEEEECccHHHHHHHHHHHhh
Confidence            3569999999999999999999985

>PRK07804 L-aspartate oxidase; Provisional

Probab=97.66  E-value=6.7e-05  Score=57.12  Aligned_cols=27  Identities=26%  Similarity=0.498  Sum_probs=24.4

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +.++||+|||+|.|||+||+.+++.|.
T Consensus        14 ~~~~DVlVIG~G~AGl~AAi~aae~G~   40 (541)
T PRK07804         14 RDAADVVVVGSGVAGLTAALAARRAGR   40 (541)
T ss_pred             ccccCEEEECccHHHHHHHHHHHHcCC
Confidence            457999999999999999999998874

>TIGR00551 nadB L-aspartate oxidase

Probab=97.66  E-value=4.6e-05  Score=57.03  Aligned_cols=24  Identities=29%  Similarity=0.634  Sum_probs=22.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ++||+|||+|.|||+||+.+++.|
T Consensus         2 ~~DVlVVG~G~AGl~AA~~aa~~G   25 (488)
T TIGR00551         2 SCDVVVIGSGAAGLSAALALADQG   25 (488)
T ss_pred             CccEEEECccHHHHHHHHHHHhCC
Confidence            479999999999999999999877

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.66  E-value=4.6e-05  Score=58.25  Aligned_cols=25  Identities=28%  Similarity=0.391  Sum_probs=23.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      .++||+|||+|.|||+||+.++++|
T Consensus         4 ~~~DVlVVG~G~AGl~AA~~Aa~~G   28 (577)
T PRK06069          4 LKYDVVIVGSGLAGLRAAVAAAERS   28 (577)
T ss_pred             eecCEEEECccHHHHHHHHHHHHhC
Confidence            4689999999999999999999886

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=97.65  E-value=4.9e-05  Score=55.47  Aligned_cols=22  Identities=36%  Similarity=0.596  Sum_probs=21.4

Q ss_pred             CEEEECCCHHHHHHHHHHHHCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ||+|||+|.+|+++|+.++++|
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G   22 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAG   22 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcC
Confidence            8999999999999999999988

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=97.64  E-value=0.00011  Score=60.61  Aligned_cols=57  Identities=14%  Similarity=0.158  Sum_probs=36.8

Q ss_pred             eeeeeeecCCcCCccccccCC--CCCCCcccccCccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312            9 RLNCFSRIKTFPYPYGYTPCR--ALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      -+..++|...+..+.+.....  +.+....  .+..++||+|||+|.||++||+.++++|.
T Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i--~~t~~~DVvVVG~G~AGl~AAi~Aae~Ga  433 (1167)
T PTZ00306        375 DYTTYTREGERVAHMFEIATEDAEMRKKRI--AGSLPARVIVVGGGLAGCSAAIEAASCGA  433 (1167)
T ss_pred             eEEEEeeccchhhhhhcccccCcccccccc--ccCCCCCEEEECCCHHHHHHHHHHHHCCC
Confidence            345566665555555443222  2221111  13457999999999999999999999874

>PLN02676 polyamine oxidase

Probab=97.64  E-value=6e-05  Score=56.88  Aligned_cols=26  Identities=38%  Similarity=0.574  Sum_probs=24.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+||+|||+|++||++|+.|+++|+
T Consensus        25 ~~~~v~IIGaG~sGL~aa~~L~~~g~   50 (487)
T PLN02676         25 PSPSVIIVGAGMSGISAAKTLSEAGI   50 (487)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCC
Confidence            46899999999999999999999885

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.64  E-value=5.6e-05  Score=58.23  Aligned_cols=26  Identities=38%  Similarity=0.613  Sum_probs=23.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||+|.|||+||+.+++.|.
T Consensus        11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~   36 (591)
T PRK07057         11 RKFDVVIVGAGGSGMRASLQLARAGL   36 (591)
T ss_pred             ccCCEEEECccHHHHHHHHHHHHCCC
Confidence            46899999999999999999998874

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=97.64  E-value=5.6e-05  Score=62.31  Aligned_cols=26  Identities=35%  Similarity=0.653  Sum_probs=24.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..++|+|||+||+||++|+.|+++|+
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~G~  563 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARAGH  563 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC
Confidence            46899999999999999999999986

>PLN02507 glutathione reductase

Probab=97.64  E-value=5.8e-05  Score=56.96  Aligned_cols=27  Identities=19%  Similarity=0.377  Sum_probs=24.5

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..++||+|||+||+|+.+|..+++.|.
T Consensus        23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~   49 (499)
T PLN02507         23 HYDFDLFVIGAGSGGVRAARFSANFGA   49 (499)
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Confidence            346999999999999999999999885

>PRK08401 L-aspartate oxidase; Provisional

Probab=97.63  E-value=5.4e-05  Score=56.45  Aligned_cols=24  Identities=46%  Similarity=0.620  Sum_probs=22.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .||+|||+|+|||+||+.++++|.
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~   25 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGF   25 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCC
Confidence            699999999999999999999875

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.63  E-value=6.2e-05  Score=55.90  Aligned_cols=26  Identities=38%  Similarity=0.574  Sum_probs=24.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..++|+|||+||+||++|+.|+++|+
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~~G~  157 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAKAGH  157 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC
Confidence            45899999999999999999999885

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=97.63  E-value=5.9e-05  Score=58.53  Aligned_cols=26  Identities=35%  Similarity=0.538  Sum_probs=23.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||+|.|||+||+.++++|.
T Consensus        28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~   53 (617)
T PTZ00139         28 HTYDAVVVGAGGAGLRAALGLVELGY   53 (617)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCC
Confidence            46899999999999999999999874

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.62  E-value=5.9e-05  Score=58.52  Aligned_cols=26  Identities=31%  Similarity=0.496  Sum_probs=23.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||+|.|||+||+.++++|.
T Consensus         7 ~~~DVvVIG~G~AGl~AAl~Aae~G~   32 (626)
T PRK07803          7 HSYDVVVIGAGGAGLRAAIEARERGL   32 (626)
T ss_pred             eeecEEEECcCHHHHHHHHHHHHCCC
Confidence            46899999999999999999999874

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=97.61  E-value=6.5e-05  Score=57.05  Aligned_cols=26  Identities=38%  Similarity=0.521  Sum_probs=24.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||+|.+||++|+.++++|.
T Consensus         3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~   28 (549)
T PRK12834          3 MDADVIVVGAGLAGLVAAAELADAGK   28 (549)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCC
Confidence            46899999999999999999999885

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.60  E-value=7.2e-05  Score=57.31  Aligned_cols=26  Identities=19%  Similarity=0.401  Sum_probs=23.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||+|.|||+||+.++++|.
T Consensus         4 ~~~DVvVVG~G~AGl~AAl~Aae~G~   29 (566)
T PRK06452          4 IEYDAVVIGGGLAGLMSAHEIASAGF   29 (566)
T ss_pred             ccCcEEEECccHHHHHHHHHHHHCCC
Confidence            46899999999999999999998874

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=97.60  E-value=6.1e-05  Score=58.80  Aligned_cols=26  Identities=35%  Similarity=0.519  Sum_probs=23.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||+|.|||+||+.++++|.
T Consensus        49 ~~~DVlVIG~G~AGl~AAl~Aae~G~   74 (635)
T PLN00128         49 HTYDAVVVGAGGAGLRAAIGLSEHGF   74 (635)
T ss_pred             eecCEEEECccHHHHHHHHHHHhcCC
Confidence            46899999999999999999999874

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=97.60  E-value=5.4e-05  Score=57.55  Aligned_cols=22  Identities=36%  Similarity=0.588  Sum_probs=21.0

Q ss_pred             CEEEECCCHHHHHHHHHHHHCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      +|+|||||++||++||.|++++
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~   23 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAG   23 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHhC
Confidence            6899999999999999999987

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=97.59  E-value=7.7e-05  Score=58.05  Aligned_cols=26  Identities=27%  Similarity=0.484  Sum_probs=24.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||||+.|+++|+.|+++|+
T Consensus        70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl   95 (627)
T PLN02464         70 EPLDVLVVGGGATGAGVALDAATRGL   95 (627)
T ss_pred             CccCEEEECCCHHHHHHHHHHHhCCC
Confidence            45899999999999999999999986

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.59  E-value=8.3e-05  Score=57.30  Aligned_cols=27  Identities=30%  Similarity=0.534  Sum_probs=24.6

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +.++||+|||+|.+||++|+.++++|.
T Consensus         9 ~~~~DVvVVG~G~AGl~AA~~aae~G~   35 (584)
T PRK12835          9 DREVDVLVVGSGGGGMTAALTAAARGL   35 (584)
T ss_pred             cCcCCEEEECccHHHHHHHHHHHHCCC
Confidence            457999999999999999999999885

>PTZ00058 glutathione reductase; Provisional

Probab=97.59  E-value=0.00011  Score=56.87  Aligned_cols=27  Identities=15%  Similarity=0.309  Sum_probs=24.5

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..++||+|||+||+|+.+|..+++.|.
T Consensus        46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~   72 (561)
T PTZ00058         46 RMVYDLIVIGGGSGGMAAARRAARNKA   72 (561)
T ss_pred             CccccEEEECcCHHHHHHHHHHHHcCC
Confidence            356899999999999999999999885

>TIGR02734 crtI_fam phytoene desaturase

Probab=97.58  E-value=5.5e-05  Score=56.04  Aligned_cols=22  Identities=45%  Similarity=0.724  Sum_probs=20.8

Q ss_pred             EEEECCCHHHHHHHHHHHHCCC
Q 035312           46 VLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        46 V~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      |+|||||++||+||..|+++|+
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~   22 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGI   22 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCC
Confidence            6899999999999999999986

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=97.58  E-value=6.8e-05  Score=56.34  Aligned_cols=23  Identities=26%  Similarity=0.582  Sum_probs=21.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ||+|||||.||+.||+.+++.|.
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~   23 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGA   23 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT-
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Confidence            89999999999999999999985

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=97.58  E-value=6.9e-05  Score=57.36  Aligned_cols=27  Identities=41%  Similarity=0.538  Sum_probs=25.1

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+||+|||+|++||++|++|.+.|+
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~kaG~   31 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKKAGY   31 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhhcCc
Confidence            467999999999999999999999986

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=97.58  E-value=7.1e-05  Score=56.51  Aligned_cols=25  Identities=32%  Similarity=0.506  Sum_probs=23.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ++||+|||+|++|++|++.|+++|.
T Consensus         2 ~fDv~IIGGGLAGltc~l~l~~~Gk   26 (421)
T COG3075           2 NFDVAIIGGGLAGLTCGLALQQAGK   26 (421)
T ss_pred             cccEEEEcCcHHHHHHHHHHHhcCC
Confidence            6899999999999999999999985

>PRK14727 putative mercuric reductase; Provisional

Probab=97.57  E-value=0.00011  Score=54.81  Aligned_cols=27  Identities=22%  Similarity=0.399  Sum_probs=24.6

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..++|++|||+||+|+.+|..|++.|.
T Consensus        14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~   40 (479)
T PRK14727         14 KLQLHVAIIGSGSAAFAAAIKAAEHGA   40 (479)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCC
Confidence            456999999999999999999999885

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=97.57  E-value=8.5e-05  Score=54.94  Aligned_cols=26  Identities=35%  Similarity=0.563  Sum_probs=23.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..++|+|||+||+||++|..|+++|+
T Consensus       139 ~~~~VvIIGgGpaGl~aA~~l~~~g~  164 (457)
T PRK11749        139 TGKKVAVIGAGPAGLTAAHRLARKGY  164 (457)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC
Confidence            45899999999999999999999885

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=97.57  E-value=5.6e-05  Score=58.80  Aligned_cols=25  Identities=52%  Similarity=0.771  Sum_probs=21.9

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      .+.+||+|||+|||||++|+.|.+.
T Consensus        74 ~e~~Dv~IVG~GPAGLsaAIrlKQl   98 (621)
T KOG2415|consen   74 SEEVDVVIVGAGPAGLSAAIRLKQL   98 (621)
T ss_pred             hccccEEEECCCchhHHHHHHHHHH
Confidence            4569999999999999999988653

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=97.57  E-value=8.4e-05  Score=56.38  Aligned_cols=24  Identities=29%  Similarity=0.563  Sum_probs=22.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +||+|||||++|+.+|+.|+++|+
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~   24 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGV   24 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCC
Confidence            489999999999999999999986

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=97.56  E-value=6.7e-05  Score=57.73  Aligned_cols=25  Identities=28%  Similarity=0.381  Sum_probs=22.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      .++||+|||+|.|||+||+.++++|
T Consensus         3 ~~~DVlVVG~G~AGl~AAi~Aa~~g   27 (582)
T PRK09231          3 FQADLAIIGAGGAGLRAAIAAAEAN   27 (582)
T ss_pred             eeeeEEEECccHHHHHHHHHHHHhC
Confidence            4689999999999999999998764

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=97.56  E-value=6.8e-05  Score=55.30  Aligned_cols=25  Identities=36%  Similarity=0.452  Sum_probs=22.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGIF   68 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~~   68 (68)
                      .+|+|||+|++||+||+.|+..|++
T Consensus         2 ~siaIVGaGiAGl~aA~~L~~aG~~   26 (331)
T COG3380           2 PSIAIVGAGIAGLAAAYALREAGRE   26 (331)
T ss_pred             CcEEEEccchHHHHHHHHHHhcCcE
Confidence            4799999999999999999999863

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.56  E-value=8.8e-05  Score=55.31  Aligned_cols=26  Identities=35%  Similarity=0.532  Sum_probs=23.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..++|+|||+||+||++|..|+++|+
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~~G~  167 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLARAGH  167 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCC
Confidence            45799999999999999999999886

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.56  E-value=8.7e-05  Score=57.24  Aligned_cols=26  Identities=19%  Similarity=0.463  Sum_probs=23.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||+|.|||+||+.++++|.
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~   31 (588)
T PRK08958          6 REFDAVVIGAGGAGMRAALQISQSGQ   31 (588)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCC
Confidence            46899999999999999999998874

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=97.56  E-value=5.4e-05  Score=52.11  Aligned_cols=23  Identities=35%  Similarity=0.544  Sum_probs=20.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ||++|||+|++|..+|..|+++|
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~   23 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAG   23 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTST
T ss_pred             CCEEEECcCHHHHHHHHHHhhCC
Confidence            69999999999999999999876

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PLN02568 polyamine oxidase

Probab=97.56  E-value=8.3e-05  Score=57.09  Aligned_cols=25  Identities=28%  Similarity=0.356  Sum_probs=22.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      +..||+|||+|++||++|..|++.|
T Consensus         4 ~~~~v~iiGaG~aGl~aa~~L~~~g   28 (539)
T PLN02568          4 KKPRIVIIGAGMAGLTAANKLYTSS   28 (539)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcc
Confidence            3579999999999999999999877

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=97.55  E-value=8.6e-05  Score=55.10  Aligned_cols=24  Identities=42%  Similarity=0.654  Sum_probs=22.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +||+|||||++|+++|..|++.|.
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~   25 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNK   25 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCC
Confidence            699999999999999999998774

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PRK08275 putative oxidoreductase; Provisional

Probab=97.55  E-value=7e-05  Score=57.01  Aligned_cols=25  Identities=24%  Similarity=0.453  Sum_probs=22.5

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      ..++||+|||+|.|||+||+.++++
T Consensus         7 ~~~~DVlVIG~G~AGl~AAi~aa~~   31 (554)
T PRK08275          7 EVETDILVIGGGTAGPMAAIKAKER   31 (554)
T ss_pred             eEecCEEEECcCHHHHHHHHHHHHh
Confidence            3568999999999999999999876

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=97.55  E-value=7.5e-05  Score=57.78  Aligned_cols=24  Identities=21%  Similarity=0.299  Sum_probs=22.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      .++||+|||+|.|||+||+.++++
T Consensus        10 ~~~DVlVIG~G~AGl~AAi~Aae~   33 (608)
T PRK06854         10 VDTDILIIGGGMAGCGAAFEAKEW   33 (608)
T ss_pred             eEeCEEEECcCHHHHHHHHHHHHh
Confidence            468999999999999999999987

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=97.55  E-value=8.6e-05  Score=58.13  Aligned_cols=26  Identities=31%  Similarity=0.558  Sum_probs=23.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||+|.|||+||+.++++|.
T Consensus         4 ~~~DVlVIG~G~AGl~AAi~Aae~G~   29 (657)
T PRK08626          4 IYTDALVIGAGLAGLRVAIAAAQRGL   29 (657)
T ss_pred             eeccEEEECccHHHHHHHHHHHHcCC
Confidence            46899999999999999999999875

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=97.53  E-value=8.7e-05  Score=56.29  Aligned_cols=23  Identities=43%  Similarity=0.651  Sum_probs=21.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ||+|||+|++||+||+.++++|.
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G~   23 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAGL   23 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCCC
Confidence            89999999999999999999874

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=97.52  E-value=0.00011  Score=53.29  Aligned_cols=25  Identities=24%  Similarity=0.436  Sum_probs=22.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|++|+.+|..|+++|.
T Consensus         3 ~~~vvIIGgG~AG~~aA~~Lr~~~~   27 (396)
T PRK09754          3 EKTIIIVGGGQAAAMAAASLRQQGF   27 (396)
T ss_pred             cCcEEEECChHHHHHHHHHHHhhCC
Confidence            4689999999999999999998874

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=97.52  E-value=8.1e-05  Score=56.55  Aligned_cols=25  Identities=32%  Similarity=0.566  Sum_probs=22.4

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      +.++||+|||||+.|+++|++|++.
T Consensus         3 ~~~~DVvIIGgGIiG~slA~~L~~~   27 (494)
T PRK05257          3 ESKTDVVLIGGGIMSATLGTLLKEL   27 (494)
T ss_pred             CccceEEEECcHHHHHHHHHHHHHh
Confidence            3468999999999999999999874

>PLN02612 phytoene desaturase

Probab=97.50  E-value=0.00015  Score=55.72  Aligned_cols=27  Identities=33%  Similarity=0.461  Sum_probs=24.3

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....+|+|||+|++||++|++|+++|+
T Consensus        91 ~~~~~v~iiG~G~~Gl~~a~~l~~~g~  117 (567)
T PLN02612         91 AKPLKVVIAGAGLAGLSTAKYLADAGH  117 (567)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhcCC
Confidence            345899999999999999999999885

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=97.50  E-value=0.0001  Score=55.78  Aligned_cols=22  Identities=36%  Similarity=0.678  Sum_probs=20.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHHC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      +||+|||||++|+++|++|++.
T Consensus         1 ~DVvIIGgGI~G~a~A~~L~~~   22 (483)
T TIGR01320         1 TDVVLIGAGIMSATLGVLLREL   22 (483)
T ss_pred             CcEEEECchHHHHHHHHHHHHh
Confidence            5999999999999999999985

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=97.49  E-value=0.00012  Score=54.81  Aligned_cols=26  Identities=35%  Similarity=0.661  Sum_probs=23.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+|+|||+||+||++|..|+++|+
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~  165 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGV  165 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCC
Confidence            45799999999999999999999886

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=97.49  E-value=0.00011  Score=55.80  Aligned_cols=25  Identities=44%  Similarity=0.664  Sum_probs=23.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||||++||++|..|+++|+
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~   26 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGI   26 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCC
Confidence            4689999999999999999999997

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.48  E-value=0.00015  Score=55.53  Aligned_cols=27  Identities=22%  Similarity=0.496  Sum_probs=24.5

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +.++||+|||+|.+|+++|+.++++|.
T Consensus         4 d~~~DvvIiG~G~aGl~aA~~~a~~G~   30 (557)
T PRK12844          4 DETYDVVVVGSGGGGMCAALAAADSGL   30 (557)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCC
Confidence            357999999999999999999999885

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=97.47  E-value=0.00014  Score=54.69  Aligned_cols=25  Identities=28%  Similarity=0.518  Sum_probs=23.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ++||+|||+|++|+++|+.|+++|.
T Consensus         2 ~~DviIIG~G~aGl~aA~~la~~g~   26 (422)
T PRK05329          2 KFDVLVIGGGLAGLTAALAAAEAGK   26 (422)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCC
Confidence            5899999999999999999999885

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.46  E-value=0.00016  Score=55.26  Aligned_cols=26  Identities=27%  Similarity=0.563  Sum_probs=24.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||+|++|+++|+.++++|.
T Consensus         6 ~~~DvvVvG~G~aG~~aA~~aa~~G~   31 (557)
T PRK07843          6 QEYDVVVVGSGAAGMVAALTAAHRGL   31 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCC
Confidence            46899999999999999999999885

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.45  E-value=0.00014  Score=54.70  Aligned_cols=25  Identities=20%  Similarity=0.379  Sum_probs=23.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ++|++|||+||+|+.+|+.+++.|.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~   26 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGA   26 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Confidence            4899999999999999999999875

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PLN02546 glutathione reductase

Probab=97.44  E-value=0.00015  Score=55.99  Aligned_cols=26  Identities=23%  Similarity=0.376  Sum_probs=24.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||+||+|+.+|..+++.|.
T Consensus        78 ~~yDvvVIG~GpaG~~aA~~aa~~G~  103 (558)
T PLN02546         78 YDFDLFTIGAGSGGVRASRFASNFGA  103 (558)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCC
Confidence            35899999999999999999999885

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.42  E-value=0.00016  Score=56.38  Aligned_cols=26  Identities=38%  Similarity=0.585  Sum_probs=23.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..++|+|||+||+||++|+.|++.|+
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~  217 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGH  217 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC
Confidence            45799999999999999999999886

>PRK07395 L-aspartate oxidase; Provisional

Probab=97.41  E-value=0.00015  Score=55.62  Aligned_cols=25  Identities=32%  Similarity=0.542  Sum_probs=21.9

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ..++||+|||+|.|||+||+.+++ |
T Consensus         7 ~~e~DVlVVG~G~AGl~AAi~A~~-G   31 (553)
T PRK07395          7 PSQFDVLVVGSGAAGLYAALCLPS-H   31 (553)
T ss_pred             cccCCEEEECccHHHHHHHHHhhc-C
Confidence            457999999999999999999863 5

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.40  E-value=0.00017  Score=54.68  Aligned_cols=26  Identities=31%  Similarity=0.425  Sum_probs=22.7

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..++||+|||+|.|||+||+.+ +.|.
T Consensus         5 ~~~~DVlVVG~G~AGl~AAi~A-~~G~   30 (543)
T PRK06263          5 IMITDVLIIGSGGAGARAAIEA-ERGK   30 (543)
T ss_pred             eeccCEEEECccHHHHHHHHHH-hcCC
Confidence            3568999999999999999999 7664

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=97.39  E-value=0.00019  Score=53.84  Aligned_cols=23  Identities=43%  Similarity=0.577  Sum_probs=21.6

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +|+|||+|++||++|+.|+++|+
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~   23 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGH   23 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Confidence            58999999999999999999886

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PLN02529 lysine-specific histone demethylase 1

Probab=97.39  E-value=0.00028  Score=56.48  Aligned_cols=27  Identities=37%  Similarity=0.507  Sum_probs=24.6

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+||+|||+|++||++|..|+++|+
T Consensus       158 ~~~~~v~viGaG~aGl~aA~~l~~~g~  184 (738)
T PLN02529        158 GTEGSVIIVGAGLAGLAAARQLLSFGF  184 (738)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHcCC
Confidence            356899999999999999999999986

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.37  E-value=0.00019  Score=55.63  Aligned_cols=26  Identities=35%  Similarity=0.632  Sum_probs=24.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..++|+|||+||+||++|..|++.|+
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~  334 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGV  334 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCC
Confidence            46899999999999999999999886

>PRK09077 L-aspartate oxidase; Provisional

Probab=97.37  E-value=0.00019  Score=54.61  Aligned_cols=25  Identities=40%  Similarity=0.654  Sum_probs=22.0

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      +.++||+|||+|.|||++|+.+++.
T Consensus         6 ~~~~DVlVVG~G~AGl~AA~~aa~~   30 (536)
T PRK09077          6 EHQCDVLIIGSGAAGLSLALRLAEH   30 (536)
T ss_pred             cccCCEEEECchHHHHHHHHHHHHC
Confidence            3568999999999999999999764

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=97.36  E-value=0.00016  Score=55.83  Aligned_cols=24  Identities=25%  Similarity=0.405  Sum_probs=21.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ++||+|||+|.|||+||+.++++|
T Consensus         3 ~~DVlVIG~G~AGl~AAl~aa~~g   26 (580)
T TIGR01176         3 QHDIAVIGAGGAGLRAAIAAAEAN   26 (580)
T ss_pred             ceeEEEECccHHHHHHHHHHHHhC
Confidence            589999999999999999998763

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.36  E-value=0.0002  Score=57.60  Aligned_cols=27  Identities=22%  Similarity=0.444  Sum_probs=24.2

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..++||+|||+|.|||++|+.++++|.
T Consensus        11 ~~~~DVlVVG~G~AGl~AAl~Aa~~G~   37 (897)
T PRK13800         11 RLDCDVLVIGGGTAGTMAALTAAEHGA   37 (897)
T ss_pred             eeecCEEEECcCHHHHHHHHHHHHCCC
Confidence            456899999999999999999998874

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=97.35  E-value=0.00034  Score=53.70  Aligned_cols=28  Identities=25%  Similarity=0.548  Sum_probs=24.9

Q ss_pred             CccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           40 NEAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        40 ~~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+.++||+|||+|++|+++|+.++++|.
T Consensus        13 ~~~~~dvvvvG~G~aG~~aa~~~~~~g~   40 (578)
T PRK12843         13 WDAEFDVIVIGAGAAGMSAALFAAIAGL   40 (578)
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHHHCCC
Confidence            3457899999999999999999998875

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.35  E-value=0.00022  Score=54.29  Aligned_cols=26  Identities=31%  Similarity=0.579  Sum_probs=23.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+|+|||+||+||++|+.|++.|+
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~~G~  161 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRRMGH  161 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC
Confidence            45789999999999999999999885

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.33  E-value=0.00023  Score=53.80  Aligned_cols=26  Identities=23%  Similarity=0.322  Sum_probs=23.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHC-CC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKL-GI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~-G~   67 (68)
                      .++||+|||+||+|..+|..+++. |.
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~   28 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKK   28 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCC
Confidence            469999999999999999999986 64

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=97.33  E-value=0.00026  Score=53.86  Aligned_cols=27  Identities=37%  Similarity=0.674  Sum_probs=24.7

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +.++|++|||+||+|..+|..+++.|.
T Consensus         2 ~~~yDvvVIG~GpaG~~aA~raa~~G~   28 (454)
T COG1249           2 MKEYDVVVIGAGPAGYVAAIRAAQLGL   28 (454)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCC
Confidence            357999999999999999999999985

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=97.31  E-value=0.00026  Score=55.57  Aligned_cols=25  Identities=24%  Similarity=0.437  Sum_probs=22.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      +..+++|||||++||++|+.|.+.|
T Consensus        21 ~~~~a~IIGaGiAGLAAA~~L~~dg   45 (576)
T PRK13977         21 DNKKAYIIGSGLASLAAAVFLIRDG   45 (576)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcc
Confidence            4589999999999999999999864

>PRK12839 hypothetical protein; Provisional

Probab=97.31  E-value=0.00031  Score=54.11  Aligned_cols=27  Identities=26%  Similarity=0.377  Sum_probs=24.5

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..++||+|||+|.+|+++|+.++++|.
T Consensus         6 ~~~~dv~ViG~G~aG~~aa~~~~~~g~   32 (572)
T PRK12839          6 THTYDVVVVGSGAGGLSAAVAAAYGGA   32 (572)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCC
Confidence            457999999999999999999999875

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=97.30  E-value=0.00021  Score=56.58  Aligned_cols=21  Identities=33%  Similarity=0.819  Sum_probs=20.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHC
Q 035312           45 PVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      +|+||||||+||++|+.|+++
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~   22 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLL   22 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHh
Confidence            699999999999999999987

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=97.30  E-value=0.00025  Score=54.34  Aligned_cols=25  Identities=32%  Similarity=0.546  Sum_probs=22.6

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      ...+||+|||||++|+++|++|++.
T Consensus         4 ~~~~DvvIIGgGI~G~sla~~L~~~   28 (497)
T PRK13339          4 SESKDVVLVGAGILSTTFGVLLKEL   28 (497)
T ss_pred             CccCCEEEECchHHHHHHHHHHHhC
Confidence            3568999999999999999999986

>PRK08071 L-aspartate oxidase; Provisional

Probab=97.30  E-value=0.00022  Score=53.99  Aligned_cols=22  Identities=27%  Similarity=0.457  Sum_probs=20.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHH
Q 035312           43 VVPVLIVGAGPVGLVLSILLTK   64 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~   64 (68)
                      ++||+|||+|.|||+||+.+++
T Consensus         3 ~~DVlVVG~G~AGl~AAl~a~~   24 (510)
T PRK08071          3 SADVIIIGSGIAALTVAKELCH   24 (510)
T ss_pred             ccCEEEECccHHHHHHHHHhhc
Confidence            5899999999999999999865

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.29  E-value=0.00024  Score=54.56  Aligned_cols=24  Identities=33%  Similarity=0.356  Sum_probs=21.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      .++||+|||+|.|||+||+.+++.
T Consensus         4 ~~~DVlVIG~G~AGl~AAl~aa~~   27 (583)
T PRK08205          4 HRYDVVIVGAGGAGMRAAIEAGPR   27 (583)
T ss_pred             eeccEEEECccHHHHHHHHHHHhC
Confidence            358999999999999999999764

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.28  E-value=0.00019  Score=54.94  Aligned_cols=27  Identities=37%  Similarity=0.673  Sum_probs=24.8

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+||+|||+||+|-++|++.+|+|+
T Consensus       209 k~~yDVLvVGgGPAgaaAAiYaARKGi  235 (520)
T COG3634         209 KDAYDVLVVGGGPAGAAAAIYAARKGI  235 (520)
T ss_pred             cCCceEEEEcCCcchhHHHHHHHhhcc
Confidence            346999999999999999999999986

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=97.27  E-value=0.00026  Score=53.75  Aligned_cols=25  Identities=24%  Similarity=0.365  Sum_probs=23.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ..+||+|||||+.|+++|++|++.+
T Consensus         2 ~~~DvvIIGgGI~G~a~a~~Ls~~~   26 (429)
T COG0579           2 MDYDVVIIGGGIMGAATAYELSEYE   26 (429)
T ss_pred             CceeEEEECCcHHHHHHHHHHHHhC
Confidence            4689999999999999999999875

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=97.27  E-value=0.00025  Score=53.52  Aligned_cols=26  Identities=31%  Similarity=0.374  Sum_probs=24.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +++||+|||+|++|+.+|..|+++|.
T Consensus         3 ~~~DViViGtGL~e~ilAa~Ls~~Gk   28 (443)
T PTZ00363          3 ETYDVIVCGTGLKECILSGLLSVNGK   28 (443)
T ss_pred             CcceEEEECCChHHHHHHhhhhhCCC
Confidence            56999999999999999999999985

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=97.26  E-value=0.00033  Score=52.73  Aligned_cols=26  Identities=35%  Similarity=0.530  Sum_probs=23.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+|+|||+|++|+++|..|+++|+
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~g~  167 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRAGH  167 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCC
Confidence            34799999999999999999999885

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.26  E-value=0.00032  Score=55.32  Aligned_cols=25  Identities=28%  Similarity=0.312  Sum_probs=23.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ++||+|||+||+|..+|..+++.|.
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~~G~  140 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAMERGL  140 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCC
Confidence            6899999999999999999999885

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.25  E-value=0.00033  Score=54.41  Aligned_cols=27  Identities=26%  Similarity=0.447  Sum_probs=24.5

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..++||+|||+|.|||.+|+.+++.|+
T Consensus         4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~   30 (562)
T COG1053           4 IHEFDVVVIGGGGAGLRAAIEAAEAGL   30 (562)
T ss_pred             cccCCEEEECCcHHHHHHHHHHHhcCC
Confidence            356999999999999999999999874

>PRK06175 L-aspartate oxidase; Provisional

Probab=97.24  E-value=0.0003  Score=52.25  Aligned_cols=24  Identities=38%  Similarity=0.481  Sum_probs=20.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      .++||+|||+|.|||+||+.++ +|
T Consensus         3 ~~~DVvVVG~G~AGl~AA~~a~-~G   26 (433)
T PRK06175          3 LYADVLIVGSGVAGLYSALNLR-KD   26 (433)
T ss_pred             ccccEEEECchHHHHHHHHHhc-cC
Confidence            3589999999999999999974 45

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=97.23  E-value=0.0004  Score=53.34  Aligned_cols=27  Identities=26%  Similarity=0.518  Sum_probs=24.7

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +.++||+|||+|++|+++|+.++++|.
T Consensus        10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~   36 (581)
T PRK06134         10 DLECDVLVIGSGAAGLSAAVTAAWHGL   36 (581)
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCC
Confidence            457999999999999999999999875

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=97.21  E-value=0.00044  Score=55.95  Aligned_cols=27  Identities=37%  Similarity=0.540  Sum_probs=24.4

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....+|+|||+|++||++|+.|++.|+
T Consensus       236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~  262 (808)
T PLN02328        236 VEPANVVVVGAGLAGLVAARQLLSMGF  262 (808)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCC
Confidence            356899999999999999999999886

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.19  E-value=0.00049  Score=49.17  Aligned_cols=26  Identities=42%  Similarity=0.583  Sum_probs=23.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+|+|||+|++|+.+|..|++.|+
T Consensus        17 ~~~~VvIIG~G~aGl~aA~~l~~~g~   42 (352)
T PRK12770         17 TGKKVAIIGAGPAGLAAAGYLACLGY   42 (352)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC
Confidence            34789999999999999999999875

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=97.18  E-value=0.00038  Score=54.43  Aligned_cols=23  Identities=35%  Similarity=0.431  Sum_probs=20.6

Q ss_pred             CEEEECCCHHHHHHHHHHH----HCCC
Q 035312           45 PVLIVGAGPVGLVLSILLT----KLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~----~~G~   67 (68)
                      ||+|||+|.|||+||+.++    ++|.
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~   27 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGL   27 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCC
Confidence            8999999999999999998    5563

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=97.16  E-value=0.00036  Score=53.65  Aligned_cols=24  Identities=38%  Similarity=0.612  Sum_probs=19.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ++|+|||||++||++|..|.+.|+
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~   25 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGL   25 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC
Confidence            589999999999999999999886

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK02106 choline dehydrogenase; Validated

Probab=97.14  E-value=0.00051  Score=52.20  Aligned_cols=26  Identities=31%  Similarity=0.471  Sum_probs=23.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHH-CCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTK-LGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~-~G~   67 (68)
                      .++|++|||+|.+|+.+|..|++ .|+
T Consensus         4 ~~~D~iIVG~G~aG~vvA~rLae~~g~   30 (560)
T PRK02106          4 MEYDYIIIGAGSAGCVLANRLSEDPDV   30 (560)
T ss_pred             CcCcEEEECCcHHHHHHHHHHHhCCCC
Confidence            45899999999999999999999 564

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=97.13  E-value=0.00034  Score=52.80  Aligned_cols=27  Identities=41%  Similarity=0.443  Sum_probs=24.5

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....||+|||||.-|+++||+|+++|.
T Consensus         5 ~~~~~viiVGAGVfG~stAyeLaK~g~   31 (399)
T KOG2820|consen    5 VKSRDVIIVGAGVFGLSTAYELAKRGD   31 (399)
T ss_pred             ccceeEEEEcccccchHHHHHHHhcCC
Confidence            456899999999999999999999984

>TIGR02462 pyranose_ox pyranose oxidase

Probab=97.12  E-value=0.0005  Score=53.36  Aligned_cols=24  Identities=33%  Similarity=0.663  Sum_probs=22.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +||+|||+||+|+.+|+.|+++|+
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~   24 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGL   24 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCC
Confidence            699999999999999999999885

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.11  E-value=0.00061  Score=52.51  Aligned_cols=26  Identities=31%  Similarity=0.727  Sum_probs=23.7

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +.++||+|||+| +|+++|+.+++.|.
T Consensus        14 d~e~DvvvvG~G-~G~~aA~~a~~~G~   39 (564)
T PRK12845         14 DTTVDLLVVGSG-TGMAAALAAHELGL   39 (564)
T ss_pred             CceeCEEEECCc-HHHHHHHHHHHCCC
Confidence            458999999999 89999999999885

>PLN02487 zeta-carotene desaturase

Probab=97.10  E-value=0.00056  Score=53.16  Aligned_cols=25  Identities=32%  Similarity=0.490  Sum_probs=23.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|++||++|+.|+++|+
T Consensus        75 ~~~v~iiG~G~~Gl~~a~~L~~~g~   99 (569)
T PLN02487         75 KLKVAIIGAGLAGMSTAVELLDQGH   99 (569)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC
Confidence            3599999999999999999999886

>PTZ00188 adrenodoxin reductase; Provisional

Probab=97.08  E-value=0.00084  Score=52.06  Aligned_cols=26  Identities=31%  Similarity=0.337  Sum_probs=21.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHH-HCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLT-KLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~-~~G~   67 (68)
                      ....|+|||+|||||.+|..|. +.|+
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~   64 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERV   64 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCC
Confidence            4578999999999999999654 5554

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.06  E-value=0.00063  Score=50.37  Aligned_cols=23  Identities=30%  Similarity=0.661  Sum_probs=21.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +|+|||+||+|+++|..+++.|.
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~   24 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGK   24 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC
Confidence            79999999999999999999885

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=97.06  E-value=0.00064  Score=52.72  Aligned_cols=26  Identities=31%  Similarity=0.503  Sum_probs=22.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+|+|||||+|||+||..|-++|.
T Consensus        20 ~~~kIvIIGAG~AGLaAA~rLle~gf   45 (498)
T KOG0685|consen   20 GNAKIVIIGAGIAGLAAATRLLENGF   45 (498)
T ss_pred             CCceEEEECCchHHHHHHHHHHHhCC
Confidence            34689999999999999999987775

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.06  E-value=0.00092  Score=38.60  Aligned_cols=23  Identities=35%  Similarity=0.674  Sum_probs=21.0

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +|+|||+|+.|+-+|..|++.|.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~   23 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGK   23 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCc
Confidence            48999999999999999998874

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=97.05  E-value=0.00059  Score=51.95  Aligned_cols=26  Identities=35%  Similarity=0.525  Sum_probs=23.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+|+|||+||+||++|..|++.|+
T Consensus       122 tg~~VaviGaGPAGl~~a~~L~~~G~  147 (457)
T COG0493         122 TGKKVAVIGAGPAGLAAADDLSRAGH  147 (457)
T ss_pred             CCCEEEEECCCchHhhhHHHHHhCCC
Confidence            34899999999999999999999986

>PRK07512 L-aspartate oxidase; Provisional

Probab=97.03  E-value=0.00044  Score=52.41  Aligned_cols=23  Identities=30%  Similarity=0.440  Sum_probs=20.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHH
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTK   64 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~   64 (68)
                      .++||+|||+|.|||+||+.++.
T Consensus         8 ~~~DVlVIG~G~AGl~AAl~Aa~   30 (513)
T PRK07512          8 LTGRPVIVGGGLAGLMAALKLAP   30 (513)
T ss_pred             CcCCEEEECchHHHHHHHHHhCc
Confidence            46899999999999999999863

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=97.03  E-value=0.00059  Score=49.70  Aligned_cols=22  Identities=18%  Similarity=0.459  Sum_probs=20.3

Q ss_pred             CEEEECCCHHHHHHHHHHHHCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      +|+|||+|++|+++|..|++.+
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~   23 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLN   23 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHC
Confidence            6999999999999999998865

>PRK13984 putative oxidoreductase; Provisional

Probab=97.03  E-value=0.00075  Score=51.62  Aligned_cols=26  Identities=38%  Similarity=0.653  Sum_probs=24.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+|+|||+|++|+++|..|+++|+
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~~G~  307 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLATMGY  307 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC
Confidence            45789999999999999999999986

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=97.02  E-value=0.00067  Score=53.38  Aligned_cols=26  Identities=27%  Similarity=0.618  Sum_probs=24.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+++|||||++|+.+|+.|++.|+
T Consensus       123 v~~svLVIGGGvAGitAAl~La~~G~  148 (622)
T COG1148         123 VSKSVLVIGGGVAGITAALELADMGF  148 (622)
T ss_pred             hccceEEEcCcHHHHHHHHHHHHcCC
Confidence            45789999999999999999999987

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=96.99  E-value=0.00082  Score=50.88  Aligned_cols=24  Identities=33%  Similarity=0.599  Sum_probs=22.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +||+|||+|++|+++|+.|+++|.
T Consensus         1 ~Dv~IIGgG~aGl~~A~~l~~~g~   24 (419)
T TIGR03378         1 FDVIIIGGGLAGLSCALRLAEAGK   24 (419)
T ss_pred             CCEEEECchHHHHHHHHHHHHCCC
Confidence            589999999999999999998874

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=96.98  E-value=0.00071  Score=52.25  Aligned_cols=26  Identities=35%  Similarity=0.566  Sum_probs=23.4

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ....+|+|||||++||++||+|++++
T Consensus         9 ~~~~~vaVvGGGiSGL~aay~L~r~~   34 (491)
T KOG1276|consen    9 VSGMTVAVVGGGISGLCAAYYLARLG   34 (491)
T ss_pred             eecceEEEECCchhHHHHHHHHHhcC
Confidence            34689999999999999999999975

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=96.89  E-value=0.0012  Score=47.49  Aligned_cols=23  Identities=22%  Similarity=0.260  Sum_probs=20.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      +||+|||+|++|+.+|..|.+.+
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~   25 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQD   25 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhC
Confidence            58999999999999999998753

>TIGR00136 gidA glucose-inhibited division protein A

Probab=96.88  E-value=0.0011  Score=52.48  Aligned_cols=24  Identities=21%  Similarity=0.555  Sum_probs=22.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +||+|||+|++|+.+|..+++.|.
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~   24 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGA   24 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCC
Confidence            699999999999999999999875

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=96.86  E-value=0.00085  Score=50.37  Aligned_cols=22  Identities=36%  Similarity=0.665  Sum_probs=18.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ||+|||+|+||..+|..|++.+
T Consensus         1 ~v~IvGgG~aG~~~A~~L~~~~   22 (454)
T PF04820_consen    1 DVVIVGGGTAGWMAAAALARAG   22 (454)
T ss_dssp             EEEEE--SHHHHHHHHHHHHHC
T ss_pred             CEEEECCCHHHHHHHHHHHHhC
Confidence            7999999999999999999876

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=96.82  E-value=0.0014  Score=48.73  Aligned_cols=24  Identities=29%  Similarity=0.681  Sum_probs=22.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .|++|||+|++|+.+|..++++|.
T Consensus         2 ~~vvviG~G~~G~~~a~~~~~~g~   25 (466)
T PRK07845          2 TRIVIIGGGPGGYEAALVAAQLGA   25 (466)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCC
Confidence            489999999999999999999875

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=96.78  E-value=0.0012  Score=51.28  Aligned_cols=22  Identities=36%  Similarity=0.619  Sum_probs=20.4

Q ss_pred             EEEECCCHHHHHHHHHHHHCCC
Q 035312           46 VLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        46 V~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      |+|||+|.|||+||+.+++.|.
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~   22 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGY   22 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCC
Confidence            6899999999999999999875

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK09897 hypothetical protein; Provisional

Probab=96.77  E-value=0.0014  Score=50.75  Aligned_cols=23  Identities=35%  Similarity=0.507  Sum_probs=20.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ++|+|||+||+|+++|..|.+.+
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~   24 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQ   24 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcC
Confidence            58999999999999999998753

>PLN02785 Protein HOTHEAD

Probab=96.67  E-value=0.0025  Score=49.52  Aligned_cols=25  Identities=24%  Similarity=0.461  Sum_probs=22.3

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      ...+|++|||+|.+|+.+|..|+++
T Consensus        53 ~~~yD~IIVG~G~aG~~lA~~Ls~~   77 (587)
T PLN02785         53 DSAYDYIVVGGGTAGCPLAATLSQN   77 (587)
T ss_pred             cccCCEEEECcCHHHHHHHHHHhcC
Confidence            4569999999999999999999873

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=96.66  E-value=0.0012  Score=50.32  Aligned_cols=24  Identities=25%  Similarity=0.448  Sum_probs=21.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      ...+|+|||+|.+||+||+.|+++
T Consensus         7 ~r~~IAVIGsGisGLSAA~~Ls~r   30 (447)
T COG2907           7 PRRKIAVIGSGISGLSAAWLLSRR   30 (447)
T ss_pred             CCcceEEEcccchhhhhHHhhhcc
Confidence            457899999999999999999875

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=96.65  E-value=0.0021  Score=49.31  Aligned_cols=27  Identities=37%  Similarity=0.522  Sum_probs=24.5

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+.||+|||+|.+||.+|.+|+.+|.
T Consensus         3 ~~~~dvivvgaglaglvaa~elA~aG~   29 (552)
T COG3573           3 GLTADVIVVGAGLAGLVAAAELADAGK   29 (552)
T ss_pred             cccccEEEECccHHHHHHHHHHHhcCc
Confidence            356899999999999999999999885

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=96.62  E-value=0.0019  Score=47.63  Aligned_cols=21  Identities=24%  Similarity=0.404  Sum_probs=19.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHC
Q 035312           45 PVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      +|+|||||++|+.+|..|++.
T Consensus         3 ~VVIIGgG~aG~~aA~~l~~~   23 (438)
T PRK13512          3 KIIVVGAVAGGATCASQIRRL   23 (438)
T ss_pred             eEEEECCcHHHHHHHHHHHhh
Confidence            799999999999999999875

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=96.59  E-value=0.0025  Score=49.70  Aligned_cols=27  Identities=19%  Similarity=0.299  Sum_probs=25.0

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +..+||+|||||+.|+.+|..++.+|+
T Consensus        10 ~~~~DviVIGGGitG~GiArDaA~RGl   36 (532)
T COG0578          10 MEEFDVIVIGGGITGAGIARDAAGRGL   36 (532)
T ss_pred             ccCCCEEEECCchhhHHHHHHHHhCCC
Confidence            367999999999999999999999986

>PLN03000 amine oxidase

Probab=96.57  E-value=0.0027  Score=52.03  Aligned_cols=26  Identities=38%  Similarity=0.590  Sum_probs=23.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...||+|||+|++||.+|..|++.|+
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~G~  208 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRFGF  208 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCC
Confidence            45899999999999999999999875

>TIGR01810 betA choline dehydrogenase

Probab=96.55  E-value=0.0019  Score=48.79  Aligned_cols=22  Identities=32%  Similarity=0.425  Sum_probs=21.0

Q ss_pred             CEEEECCCHHHHHHHHHHHHCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      |++|||+|.+|+.+|..|++.|
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~   22 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDV   22 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCC
Confidence            8999999999999999999886

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=96.29  E-value=0.003  Score=50.08  Aligned_cols=26  Identities=19%  Similarity=0.510  Sum_probs=23.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+||+|||||.||+.||+..+|.|.
T Consensus         3 ~~~DVIVIGgGHAG~EAA~AaARmG~   28 (621)
T COG0445           3 KEYDVIVIGGGHAGVEAALAAARMGA   28 (621)
T ss_pred             CCCceEEECCCccchHHHHhhhccCC
Confidence            35999999999999999999999884

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=96.27  E-value=0.004  Score=45.81  Aligned_cols=26  Identities=19%  Similarity=0.149  Sum_probs=21.7

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ...++|+|||||.+|+.+|..|.+.+
T Consensus         8 ~~~~~vVIvGgG~aGl~~a~~L~~~~   33 (424)
T PTZ00318          8 LKKPNVVVLGTGWAGAYFVRNLDPKK   33 (424)
T ss_pred             CCCCeEEEECCCHHHHHHHHHhCcCC
Confidence            35679999999999999998886543

>PLN02976 amine oxidase

Probab=96.26  E-value=0.0052  Score=53.21  Aligned_cols=26  Identities=35%  Similarity=0.641  Sum_probs=23.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...||+|||+|++|+.+|+.|++.|+
T Consensus       692 ~~~dV~IIGAG~AGLaAA~~L~~~G~  717 (1713)
T PLN02976        692 DRKKIIVVGAGPAGLTAARHLQRQGF  717 (1713)
T ss_pred             CCCcEEEECchHHHHHHHHHHHHCCC
Confidence            35899999999999999999999885

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=96.24  E-value=0.0037  Score=48.03  Aligned_cols=27  Identities=33%  Similarity=0.543  Sum_probs=23.9

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..++|++|||+|.+|..+|..|++.|+
T Consensus         5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~   31 (542)
T COG2303           5 KMEYDYVIVGSGSAGSVLAARLSDAGL   31 (542)
T ss_pred             cCCCCEEEECCCchhHHHHHHhcCCCC
Confidence            357999999999999999999997664

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=96.23  E-value=0.0051  Score=47.21  Aligned_cols=25  Identities=24%  Similarity=0.331  Sum_probs=22.3

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      +.+.||+|||+|..|.+.|++|+++
T Consensus        84 ~~~~dVvIIGGG~~GsS~AfWLKer  108 (509)
T KOG2853|consen   84 PYHCDVVIIGGGGSGSSTAFWLKER  108 (509)
T ss_pred             ccccCEEEECCCccchhhHHHHHHH
Confidence            3578999999999999999999764

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=96.13  E-value=0.0065  Score=45.74  Aligned_cols=24  Identities=42%  Similarity=0.600  Sum_probs=22.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +|++|||+|++|+.+|..|++.|.
T Consensus         2 fd~lIVGaGlsG~V~A~~a~~~gk   25 (374)
T COG0562           2 FDYLIVGAGLSGAVIAEVAAQLGK   25 (374)
T ss_pred             CcEEEECCchhHHHHHHHHHHcCC
Confidence            799999999999999999988774

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=96.13  E-value=0.0049  Score=47.60  Aligned_cols=26  Identities=35%  Similarity=0.648  Sum_probs=24.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++|++|||+||.|..+|+..++.|+
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGl   63 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGL   63 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcc
Confidence            57999999999999999999999886

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=96.12  E-value=0.00024  Score=51.59  Aligned_cols=23  Identities=39%  Similarity=0.570  Sum_probs=20.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      ..||+|||+|-+||++||+.+++
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~   98 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKN   98 (328)
T ss_pred             ccceEEECCCccccceeeeeecc
Confidence            47999999999999999988754

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=96.09  E-value=0.0035  Score=48.91  Aligned_cols=21  Identities=38%  Similarity=0.619  Sum_probs=19.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHC
Q 035312           45 PVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      ||+|||+|.|||++|+.|++.
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~   29 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS   29 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC
Confidence            999999999999999999764

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=95.97  E-value=0.0095  Score=41.63  Aligned_cols=25  Identities=40%  Similarity=0.579  Sum_probs=23.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|||+|+.|+.+|..|+++|+
T Consensus       136 ~~~v~vvG~G~~gle~A~~~~~~G~  160 (415)
T COG0446         136 PKDVVVVGAGPIGLEAAEAAAKRGK  160 (415)
T ss_pred             cCeEEEECCcHHHHHHHHHHHHcCC
Confidence            3799999999999999999999985

>TIGR03452 mycothione_red mycothione reductase

Probab=95.87  E-value=0.0074  Score=44.86  Aligned_cols=20  Identities=15%  Similarity=0.262  Sum_probs=17.0

Q ss_pred             ccCEEEECCCHHHHHHHHHH
Q 035312           43 VVPVLIVGAGPVGLVLSILL   62 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L   62 (68)
                      ++|++|||+||+|..+|..+
T Consensus         2 ~yD~vvIG~G~~g~~aa~~~   21 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPRF   21 (452)
T ss_pred             CcCEEEECCCHHHHHHHHHH
Confidence            58999999999998886543

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.82  E-value=0.009  Score=46.23  Aligned_cols=22  Identities=32%  Similarity=0.471  Sum_probs=20.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHHC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      ++|+|||+|++|+.+|.+|.+.
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~   23 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKS   23 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhC
Confidence            6899999999999999999765

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=95.77  E-value=0.0066  Score=44.21  Aligned_cols=23  Identities=30%  Similarity=0.551  Sum_probs=18.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      .+|+++||.||++|++|..|...
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~   24 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEH   24 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHH
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhc
Confidence            48999999999999999998764

>PRK07846 mycothione reductase; Reviewed

Probab=95.77  E-value=0.0096  Score=44.32  Aligned_cols=20  Identities=20%  Similarity=0.365  Sum_probs=17.3

Q ss_pred             ccCEEEECCCHHHHHHHHHH
Q 035312           43 VVPVLIVGAGPVGLVLSILL   62 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L   62 (68)
                      ++|++|||+||+|..+|...
T Consensus         1 ~yD~vVIG~G~~g~~aa~~~   20 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDERF   20 (451)
T ss_pred             CCCEEEECCCHHHHHHHHHH
Confidence            38999999999999888653

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=95.67  E-value=0.018  Score=46.89  Aligned_cols=27  Identities=26%  Similarity=0.535  Sum_probs=24.7

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....||+|||||..|..+||.|++.|+
T Consensus        37 ~~~A~vvViggG~~g~~~~yhlak~g~   63 (856)
T KOG2844|consen   37 PSTADVVVIGGGSLGCSTAYHLAKRGM   63 (856)
T ss_pred             CCcccEEEEcCCchhHHHHHHHHHccc
Confidence            456899999999999999999999986

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=95.62  E-value=0.01  Score=42.10  Aligned_cols=21  Identities=10%  Similarity=0.188  Sum_probs=18.3

Q ss_pred             CEEEECCCHHHHHHHHHHHHC
Q 035312           45 PVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      +|+|||||++|+.+|..|.++
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~   21 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMK   21 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCc
Confidence            589999999999999988643

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=95.59  E-value=0.011  Score=46.79  Aligned_cols=27  Identities=22%  Similarity=0.449  Sum_probs=23.8

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+||+|||||-||..+|...+|-|-
T Consensus        26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga   52 (679)
T KOG2311|consen   26 TSTYDVVVIGGGHAGCEAAAAAARLGA   52 (679)
T ss_pred             CCcccEEEECCCccchHHHHHHHhcCC
Confidence            457999999999999999999988763

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=95.58  E-value=0.012  Score=45.24  Aligned_cols=24  Identities=38%  Similarity=0.513  Sum_probs=20.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      ....|+|||+||||+-+|..|.++
T Consensus        19 ~~p~vcIVGsGPAGfYtA~~LLk~   42 (468)
T KOG1800|consen   19 STPRVCIVGSGPAGFYTAQHLLKR   42 (468)
T ss_pred             CCceEEEECCCchHHHHHHHHHhc
Confidence            346999999999999999988764

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.56  E-value=0.017  Score=42.95  Aligned_cols=25  Identities=28%  Similarity=0.434  Sum_probs=22.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|++|+.+|..|+++|+
T Consensus        16 ~~~v~viG~G~~G~~~A~~L~~~G~   40 (480)
T PRK01438         16 GLRVVVAGLGVSGFAAADALLELGA   40 (480)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC
Confidence            4689999999999999999999885

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.52  E-value=0.016  Score=42.62  Aligned_cols=23  Identities=26%  Similarity=0.433  Sum_probs=21.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .|+|||.|++|+++|..|+++|+
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~   24 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGW   24 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCC
Confidence            58999999999999999999986

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=95.33  E-value=0.017  Score=37.34  Aligned_cols=25  Identities=28%  Similarity=0.425  Sum_probs=20.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ...+|+|||+|.++.-+|..|++.|
T Consensus       166 ~~k~V~VVG~G~SA~d~a~~l~~~g  190 (203)
T PF13738_consen  166 KGKRVVVVGGGNSAVDIAYALAKAG  190 (203)
T ss_dssp             TTSEEEEE--SHHHHHHHHHHTTTC
T ss_pred             CCCcEEEEcChHHHHHHHHHHHhhC
Confidence            4588999999999999999998876

...

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=95.31  E-value=0.014  Score=50.26  Aligned_cols=26  Identities=38%  Similarity=0.541  Sum_probs=24.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..++|+|||+||+||+||-.|.+.|+
T Consensus      1784 tg~~vaiigsgpaglaaadqlnk~gh 1809 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGH 1809 (2142)
T ss_pred             cCcEEEEEccCchhhhHHHHHhhcCc
Confidence            45899999999999999999999886

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=95.15  E-value=0.016  Score=44.14  Aligned_cols=25  Identities=28%  Similarity=0.371  Sum_probs=21.5

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      ..++|.+|||+|+.|++.|.+|.-+
T Consensus        46 ~~~~D~VvvGgGiVGlAsARel~lr   70 (453)
T KOG2665|consen   46 KERYDLVVVGGGIVGLASARELSLR   70 (453)
T ss_pred             cccccEEEECCceeehhhhHHHhhc
Confidence            4579999999999999999988543

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=95.01  E-value=0.0072  Score=45.32  Aligned_cols=26  Identities=27%  Similarity=0.422  Sum_probs=23.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..++|+|||||+.|+.+||+|++.+-
T Consensus         9 nsk~I~IvGGGIiGvctayyLt~~~s   34 (380)
T KOG2852|consen    9 NSKKIVIVGGGIIGVCTAYYLTEHPS   34 (380)
T ss_pred             CceEEEEECCCceeeeeehhhhcCCc
Confidence            34899999999999999999998763

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=94.98  E-value=0.029  Score=45.54  Aligned_cols=22  Identities=32%  Similarity=0.326  Sum_probs=19.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHHC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      .+|+|||+|++|+.+|..|.++
T Consensus         4 ~kIVIVG~G~AG~~aa~~L~~~   25 (847)
T PRK14989          4 VRLAIIGNGMVGHRFIEDLLDK   25 (847)
T ss_pred             CcEEEECCCHHHHHHHHHHHhh
Confidence            5899999999999999998764

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=94.82  E-value=0.029  Score=44.09  Aligned_cols=27  Identities=22%  Similarity=0.470  Sum_probs=24.4

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+|++|||+|.-||.+|.+|+|.|.
T Consensus        12 ~~~ydavvig~GhnGL~aaayl~r~g~   38 (561)
T KOG4254|consen   12 KPEYDAVVIGGGHNGLTAAAYLARYGQ   38 (561)
T ss_pred             CcccceEEecCCccchhHHHHHHhcCc
Confidence            357999999999999999999999874

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=94.73  E-value=0.045  Score=35.37  Aligned_cols=23  Identities=35%  Similarity=0.577  Sum_probs=21.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .|+|+|+|-.|.++|..|+++|+
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~   23 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGH   23 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTE
T ss_pred             CEEEECcCHHHHHHHHHHHHcCC
Confidence            48999999999999999999984

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=94.71  E-value=0.025  Score=43.12  Aligned_cols=25  Identities=28%  Similarity=0.501  Sum_probs=23.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...|-|||+|+||--+|+.++++|+
T Consensus         3 ~~~i~VIGaGLAGSEAAwqiA~~Gv   27 (439)
T COG1206           3 QQPINVIGAGLAGSEAAWQIAKRGV   27 (439)
T ss_pred             CCceEEEcccccccHHHHHHHHcCC
Confidence            4678999999999999999999997

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=94.57  E-value=0.033  Score=37.41  Aligned_cols=23  Identities=35%  Similarity=0.577  Sum_probs=19.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +|+|||.|..||.+|..|+++|+
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~G~   24 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEKGH   24 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHTTS
T ss_pred             EEEEECCCcchHHHHHHHHhCCC
Confidence            58999999999999999999986

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=94.57  E-value=0.063  Score=33.61  Aligned_cols=22  Identities=36%  Similarity=0.711  Sum_probs=20.3

Q ss_pred             EEEECCCHHHHHHHHHHHHCCC
Q 035312           46 VLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        46 V~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      |+|+|+|-.|...|..|++.|.
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~   22 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGH   22 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTC
T ss_pred             CEEECcCHHHHHHHHHHHHCCC
Confidence            6899999999999999998875

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=94.45  E-value=0.034  Score=44.47  Aligned_cols=21  Identities=29%  Similarity=0.357  Sum_probs=18.5

Q ss_pred             EEEECCCHHHHHHHHHHHHCC
Q 035312           46 VLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        46 V~IVGaG~aGl~~A~~L~~~G   66 (68)
                      |+|||+|++|+.+|..|.+.+
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~   21 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLN   21 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcC
Confidence            689999999999999887653

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=94.45  E-value=0.052  Score=38.98  Aligned_cols=25  Identities=36%  Similarity=0.569  Sum_probs=22.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|+.|+.+|..|++.|.
T Consensus       141 ~~~vvViGgG~~g~e~A~~L~~~g~  165 (377)
T PRK04965        141 AQRVLVVGGGLIGTELAMDLCRAGK  165 (377)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCC
Confidence            4689999999999999999998774

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=94.32  E-value=0.049  Score=41.30  Aligned_cols=24  Identities=25%  Similarity=0.317  Sum_probs=21.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      ..++|+|||||.+|+.+|..|.++
T Consensus         2 ~~~~iVIlGgGfgGl~~a~~l~~~   25 (405)
T COG1252           2 MKKRIVILGGGFGGLSAAKRLARK   25 (405)
T ss_pred             CCceEEEECCcHHHHHHHHHhhhc
Confidence            357899999999999999999876

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=94.25  E-value=0.065  Score=38.90  Aligned_cols=25  Identities=40%  Similarity=0.498  Sum_probs=22.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|+.|+.+|..|++.|.
T Consensus       144 ~~~vvViGgG~ig~E~A~~l~~~g~  168 (396)
T PRK09754        144 ERSVVIVGAGTIGLELAASATQRRC  168 (396)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC
Confidence            4689999999999999999998875

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.21  E-value=0.064  Score=39.33  Aligned_cols=26  Identities=50%  Similarity=0.686  Sum_probs=23.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....|+|+|+|..|+.+|..|+++|.
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~~G~   29 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKKLGA   29 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC
Confidence            35789999999999999999999986

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=94.20  E-value=0.041  Score=42.36  Aligned_cols=27  Identities=22%  Similarity=0.372  Sum_probs=23.9

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..++|.+|||+|-.||+||-+.+..|.
T Consensus        17 sydyDLIviGgGSgGLacaKeAa~~G~   43 (503)
T KOG4716|consen   17 SYDYDLIVIGGGSGGLACAKEAADLGA   43 (503)
T ss_pred             cCCccEEEEcCCcchhhHHHHHHhcCC
Confidence            356999999999999999999988773

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=94.18  E-value=0.062  Score=39.93  Aligned_cols=25  Identities=32%  Similarity=0.664  Sum_probs=22.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|++|+.+|..|++.|.
T Consensus       180 ~~~vvIIGgG~~G~E~A~~l~~~g~  204 (472)
T PRK05976        180 PKSLVIVGGGVIGLEWASMLADFGV  204 (472)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC
Confidence            4689999999999999999998774

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=94.14  E-value=0.067  Score=39.23  Aligned_cols=25  Identities=36%  Similarity=0.529  Sum_probs=22.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|++|+.+|..|++.|.
T Consensus       157 ~~~vvIIGgG~~g~e~A~~l~~~g~  181 (438)
T PRK07251        157 PERLGIIGGGNIGLEFAGLYNKLGS  181 (438)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC
Confidence            4689999999999999999998774

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=94.02  E-value=0.075  Score=38.71  Aligned_cols=25  Identities=32%  Similarity=0.553  Sum_probs=22.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|++|+.+|..|++.|.
T Consensus       137 ~~~vvViGgG~~g~e~A~~l~~~g~  161 (427)
T TIGR03385       137 VENVVIIGGGYIGIEMAEALRERGK  161 (427)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC
Confidence            3689999999999999999998774

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=94.01  E-value=0.058  Score=42.01  Aligned_cols=24  Identities=29%  Similarity=0.499  Sum_probs=21.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      +++||++||||+.+.++++.|++.
T Consensus         2 ~~~DVvLIGgGImsaTL~~~L~~l   25 (488)
T PF06039_consen    2 KEYDVVLIGGGIMSATLGYLLKEL   25 (488)
T ss_pred             CceeEEEECchHHHHHHHHHHHHh
Confidence            469999999999999999999763

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=93.96  E-value=0.055  Score=39.70  Aligned_cols=24  Identities=25%  Similarity=0.444  Sum_probs=21.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ..+|+|||+||++-.+|+++++.-
T Consensus         8 ~e~v~IiGSGPAa~tAAiYaarae   31 (322)
T KOG0404|consen    8 NENVVIIGSGPAAHTAAIYAARAE   31 (322)
T ss_pred             eeeEEEEccCchHHHHHHHHhhcc
Confidence            458999999999999999999864

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=93.95  E-value=0.078  Score=38.92  Aligned_cols=25  Identities=24%  Similarity=0.607  Sum_probs=22.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|||+|++|+.+|..|++.|.
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~  194 (461)
T TIGR01350       170 PESLVIIGGGVIGIEFASIFASLGS  194 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC
Confidence            4689999999999999999998774

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=93.83  E-value=0.12  Score=32.80  Aligned_cols=26  Identities=31%  Similarity=0.446  Sum_probs=23.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+++|+|+|-+|-.+++.|++.|.
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~~g~   36 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAALGA   36 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHHTTS
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCC
Confidence            46899999999999999999999875

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=93.76  E-value=0.036  Score=41.09  Aligned_cols=21  Identities=29%  Similarity=0.521  Sum_probs=18.3

Q ss_pred             CEEEECCCHHHHHHHHHHHHC
Q 035312           45 PVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      ..+|||||+||.+||-.|+..
T Consensus         1 kfivvgggiagvscaeqla~~   21 (334)
T KOG2755|consen    1 KFIVVGGGIAGVSCAEQLAQL   21 (334)
T ss_pred             CeEEEcCccccccHHHHHHhh
Confidence            368999999999999998753

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=93.74  E-value=0.046  Score=40.84  Aligned_cols=24  Identities=25%  Similarity=0.546  Sum_probs=20.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      +..+|+|||+|..||++|+.+.+.
T Consensus         2 ~~~~iaViGaGVIGlsTA~~i~~~   25 (342)
T KOG3923|consen    2 KTPRIAVIGAGVIGLSTALCILEL   25 (342)
T ss_pred             CCccEEEEcCCeechhHHHHHHHh
Confidence            347899999999999999877663

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=93.58  E-value=0.1  Score=38.68  Aligned_cols=25  Identities=32%  Similarity=0.631  Sum_probs=22.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|||+|++|+.+|..|++.|.
T Consensus       170 ~~~vvIIGgG~iG~E~A~~l~~~g~  194 (458)
T PRK06912        170 PSSLLIVGGGVIGCEFASIYSRLGT  194 (458)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC
Confidence            4689999999999999999988774

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=93.55  E-value=0.089  Score=32.94  Aligned_cols=25  Identities=40%  Similarity=0.566  Sum_probs=22.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +.+|+|+|+|-.|...|..|++.|+
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv   26 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGV   26 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCC
Confidence            4689999999999999999999886

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>TIGR02053 MerA mercuric reductase

Probab=93.55  E-value=0.1  Score=38.55  Aligned_cols=25  Identities=24%  Similarity=0.577  Sum_probs=22.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|||+|++|+.+|..|++.|.
T Consensus       166 ~~~vvIIGgG~~g~E~A~~l~~~g~  190 (463)
T TIGR02053       166 PESLAVIGGGAIGVELAQAFARLGS  190 (463)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC
Confidence            3789999999999999999998874

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=93.41  E-value=0.08  Score=42.32  Aligned_cols=25  Identities=28%  Similarity=0.499  Sum_probs=22.5

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      ...+|.+|||||-||..+|-.|++.
T Consensus        55 ~~~yDyIVVGgGtAGcvlAarLSEn   79 (623)
T KOG1238|consen   55 DSSYDYIVVGGGTAGCVLAARLSEN   79 (623)
T ss_pred             ccCCCEEEECCCchhHHHHHhhccC
Confidence            4679999999999999999998875

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=93.37  E-value=0.11  Score=38.33  Aligned_cols=25  Identities=20%  Similarity=0.501  Sum_probs=22.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|||+|++|+.+|..|++.|.
T Consensus       172 ~~~vvVvGgG~~g~E~A~~l~~~g~  196 (462)
T PRK06416        172 PKSLVVIGGGYIGVEFASAYASLGA  196 (462)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC
Confidence            3689999999999999999998875

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=93.34  E-value=0.12  Score=35.84  Aligned_cols=23  Identities=35%  Similarity=0.459  Sum_probs=21.3

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +|+|+|+|..|...|..|+++|.
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~   24 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGR   24 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCC
Confidence            58999999999999999999885

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=93.17  E-value=0.13  Score=34.25  Aligned_cols=23  Identities=30%  Similarity=0.628  Sum_probs=20.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .|.|||+|..|...|..+++.|+
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~   23 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGY   23 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTS
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCC
Confidence            48999999999999999999886

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=93.11  E-value=0.14  Score=37.65  Aligned_cols=26  Identities=31%  Similarity=0.634  Sum_probs=22.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+++|||+|+.|+.+|..|++.|.
T Consensus       168 ~~k~v~VIGgG~~g~E~A~~l~~~g~  193 (460)
T PRK06292        168 LPKSLAVIGGGVIGLELGQALSRLGV  193 (460)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC
Confidence            34789999999999999999998774

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=93.04  E-value=0.14  Score=37.37  Aligned_cols=25  Identities=32%  Similarity=0.507  Sum_probs=22.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|++|+.+|..|.+.|.
T Consensus       149 ~~~vvVvGgG~~g~e~A~~l~~~g~  173 (444)
T PRK09564        149 IKNIVIIGAGFIGLEAVEAAKHLGK  173 (444)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCC
Confidence            4689999999999999999988764

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=93.04  E-value=0.15  Score=36.55  Aligned_cols=26  Identities=35%  Similarity=0.454  Sum_probs=24.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....|+|||+|-.|..+|..|++.|+
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~GV   54 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTGI   54 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCC
Confidence            45899999999999999999999985

>PRK06370 mercuric reductase; Validated

Probab=93.03  E-value=0.13  Score=38.04  Aligned_cols=25  Identities=24%  Similarity=0.582  Sum_probs=22.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|+.|+.+|..|++.|.
T Consensus       171 ~~~vvVIGgG~~g~E~A~~l~~~G~  195 (463)
T PRK06370        171 PEHLVIIGGGYIGLEFAQMFRRFGS  195 (463)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC
Confidence            4789999999999999999998874

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=92.99  E-value=0.13  Score=36.85  Aligned_cols=23  Identities=43%  Similarity=0.499  Sum_probs=21.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +|.|||+|..|.++|+.|+++|+
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~   24 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGL   24 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCC
Confidence            58999999999999999999884

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=92.97  E-value=0.14  Score=37.68  Aligned_cols=25  Identities=28%  Similarity=0.563  Sum_probs=22.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|||+|+.|+.+|..|++.|.
T Consensus       175 ~~~v~IiGgG~~g~E~A~~l~~~g~  199 (461)
T PRK05249        175 PRSLIIYGAGVIGCEYASIFAALGV  199 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC
Confidence            4789999999999999999998874

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=92.85  E-value=0.17  Score=32.47  Aligned_cols=23  Identities=48%  Similarity=0.827  Sum_probs=20.9

Q ss_pred             CEEEECC-CHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGA-GPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGa-G~aGl~~A~~L~~~G~   67 (68)
                      +|+|||+ |..|-++|+.|..+++
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l   25 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGL   25 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTT
T ss_pred             EEEEECCCChHHHHHHHHHHhCCC
Confidence            5899999 9999999999988765

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK07846 mycothione reductase; Reviewed

Probab=92.85  E-value=0.15  Score=38.06  Aligned_cols=25  Identities=24%  Similarity=0.502  Sum_probs=22.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|||+|+.|+.+|..|++.|.
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~G~  190 (451)
T PRK07846        166 PESLVIVGGGFIAAEFAHVFSALGV  190 (451)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC
Confidence            4789999999999999999998774

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=92.80  E-value=0.18  Score=34.34  Aligned_cols=26  Identities=35%  Similarity=0.514  Sum_probs=24.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+|+|||+|-.|...|..|++.|+
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~Gv   45 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARAGI   45 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCC
Confidence            45889999999999999999999986

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=92.79  E-value=0.14  Score=37.76  Aligned_cols=25  Identities=36%  Similarity=0.442  Sum_probs=22.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|||+|+.|+-+|..|++.|.
T Consensus       148 ~~~vvViGgG~ig~E~A~~l~~~g~  172 (438)
T PRK13512        148 VDKALVVGAGYISLEVLENLYERGL  172 (438)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC
Confidence            3689999999999999999998874

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=92.79  E-value=0.15  Score=34.47  Aligned_cols=24  Identities=25%  Similarity=0.436  Sum_probs=21.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ..+|+|||+|++|+-+|..|++.+
T Consensus       141 ~~~v~ViG~G~~~~e~a~~l~~~~  164 (300)
T TIGR01292       141 NKEVAVVGGGDSAIEEALYLTRIA  164 (300)
T ss_pred             CCEEEEECCChHHHHHHHHHHhhc
Confidence            468999999999999999998765

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=92.70  E-value=0.15  Score=37.90  Aligned_cols=25  Identities=28%  Similarity=0.683  Sum_probs=22.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|+.|+.+|..|++.|.
T Consensus       172 ~~~vvVIGgG~ig~E~A~~l~~~G~  196 (466)
T PRK07818        172 PKSIVIAGAGAIGMEFAYVLKNYGV  196 (466)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCC
Confidence            4689999999999999999998874

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=92.65  E-value=0.17  Score=36.21  Aligned_cols=25  Identities=28%  Similarity=0.337  Sum_probs=21.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|+.|+-+|..|.+.|.
T Consensus       172 g~~vvViG~G~~g~e~A~~l~~~g~  196 (352)
T PRK12770        172 GKKVVVVGAGLTAVDAALEAVLLGA  196 (352)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC
Confidence            3689999999999999999887764

>PRK14694 putative mercuric reductase; Provisional

Probab=92.61  E-value=0.16  Score=37.73  Aligned_cols=25  Identities=32%  Similarity=0.496  Sum_probs=22.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|||+|+.|+.+|..|++.|.
T Consensus       178 ~~~vvViG~G~~G~E~A~~l~~~g~  202 (468)
T PRK14694        178 PERLLVIGASVVALELAQAFARLGS  202 (468)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC
Confidence            4689999999999999999998774

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=92.60  E-value=0.18  Score=37.58  Aligned_cols=25  Identities=32%  Similarity=0.624  Sum_probs=22.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|+.|+.+|..+++.|.
T Consensus       174 ~~~vvIIGgG~ig~E~A~~l~~~G~  198 (466)
T PRK06115        174 PKHLVVIGAGVIGLELGSVWRRLGA  198 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC
Confidence            4789999999999999999998774

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=92.53  E-value=0.17  Score=37.82  Aligned_cols=25  Identities=28%  Similarity=0.595  Sum_probs=22.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|||+|+.|+.+|..|++.|.
T Consensus       174 ~~~vvIiGgG~iG~E~A~~l~~~G~  198 (471)
T PRK06467        174 PKRLLVMGGGIIGLEMGTVYHRLGS  198 (471)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC
Confidence            3689999999999999999998774

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=92.53  E-value=0.15  Score=36.88  Aligned_cols=23  Identities=48%  Similarity=0.830  Sum_probs=19.4

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .|+|+|+||.||.++..++..|.
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga  193 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGA  193 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCC
Confidence            59999999999999777776653

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=92.39  E-value=0.21  Score=35.44  Aligned_cols=25  Identities=24%  Similarity=0.517  Sum_probs=22.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|-.|...|..|++.|+
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g~   29 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAGF   29 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCC
Confidence            3579999999999999999999875

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=92.36  E-value=0.19  Score=37.38  Aligned_cols=25  Identities=40%  Similarity=0.507  Sum_probs=22.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|||+|..|+-+|..|++.|.
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~g~  190 (450)
T TIGR01421       166 PKRVVIVGAGYIAVELAGVLHGLGS  190 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC
Confidence            4689999999999999999998774

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK13748 putative mercuric reductase; Provisional

Probab=92.33  E-value=0.2  Score=37.87  Aligned_cols=25  Identities=24%  Similarity=0.409  Sum_probs=22.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|||+|+.|+-+|..|++.|.
T Consensus       270 ~~~vvViGgG~ig~E~A~~l~~~g~  294 (561)
T PRK13748        270 PERLAVIGSSVVALELAQAFARLGS  294 (561)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC
Confidence            4689999999999999999998774

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=92.27  E-value=0.12  Score=39.17  Aligned_cols=21  Identities=38%  Similarity=0.724  Sum_probs=18.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHH
Q 035312           44 VPVLIVGAGPVGLVLSILLTK   64 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~   64 (68)
                      .+++|||||++|+-+|-+|+.
T Consensus       156 lti~IvGgG~TGVElAgeL~~  176 (405)
T COG1252         156 LTIVIVGGGPTGVELAGELAE  176 (405)
T ss_pred             eEEEEECCChhHHHHHHHHHH
Confidence            479999999999999998865

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=92.23  E-value=0.22  Score=34.78  Aligned_cols=26  Identities=35%  Similarity=0.539  Sum_probs=23.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+.+|+|||+|-.|..+|..|++.|+
T Consensus        31 ~~~~VliiG~GglGs~va~~La~~Gv   56 (245)
T PRK05690         31 KAARVLVVGLGGLGCAASQYLAAAGV   56 (245)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC
Confidence            45899999999999999999999986

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=92.18  E-value=0.19  Score=35.64  Aligned_cols=23  Identities=35%  Similarity=0.657  Sum_probs=21.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +|.|||+|..|...|..|+++|+
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~G~   26 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARAGH   26 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHCCC
Confidence            69999999999999999999885

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=92.11  E-value=0.18  Score=40.34  Aligned_cols=25  Identities=28%  Similarity=0.551  Sum_probs=22.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|||+|+.|+-+|..|++.|.
T Consensus       140 ~k~vvVVGgG~~GlE~A~~L~~~G~  164 (785)
T TIGR02374       140 FKKAAVIGGGLLGLEAAVGLQNLGM  164 (785)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCC
Confidence            3689999999999999999998875

>PRK06116 glutathione reductase; Validated

Probab=92.11  E-value=0.22  Score=36.64  Aligned_cols=25  Identities=32%  Similarity=0.440  Sum_probs=22.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|+.|+.+|..|++.|.
T Consensus       167 ~~~vvViGgG~~g~E~A~~l~~~g~  191 (450)
T PRK06116        167 PKRVAVVGAGYIAVEFAGVLNGLGS  191 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC
Confidence            4689999999999999999988764

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=92.10  E-value=0.22  Score=36.04  Aligned_cols=25  Identities=32%  Similarity=0.530  Sum_probs=22.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +..|+|||+|..|-++|+.|...|+
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~   27 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGL   27 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCC
Confidence            4689999999999999999988765

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=92.06  E-value=0.23  Score=32.35  Aligned_cols=26  Identities=31%  Similarity=0.433  Sum_probs=21.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....|+|+|+|.+|..|+..|.+.|.
T Consensus        19 ~p~~vvv~G~G~vg~gA~~~~~~lGa   44 (168)
T PF01262_consen   19 PPAKVVVTGAGRVGQGAAEIAKGLGA   44 (168)
T ss_dssp             -T-EEEEESTSHHHHHHHHHHHHTT-
T ss_pred             CCeEEEEECCCHHHHHHHHHHhHCCC
Confidence            45899999999999999999988775

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=92.04  E-value=0.3  Score=38.02  Aligned_cols=25  Identities=36%  Similarity=0.480  Sum_probs=21.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ...+|+|+|+|++|+.++..++..|
T Consensus       164 pg~kVlViGaG~iGL~Ai~~Ak~lG  188 (509)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGSLG  188 (509)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCC
Confidence            4578999999999999988888776

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=92.04  E-value=0.18  Score=38.15  Aligned_cols=24  Identities=25%  Similarity=0.347  Sum_probs=21.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ..+|+|||+|+.|+-+|..|++.|
T Consensus       352 ~k~VvViGgG~~g~E~A~~L~~~g  375 (515)
T TIGR03140       352 GKDVAVIGGGNSGIEAAIDLAGIV  375 (515)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhcC
Confidence            468999999999999999998765

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=92.03  E-value=0.24  Score=34.51  Aligned_cols=26  Identities=38%  Similarity=0.537  Sum_probs=23.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+|+|||+|-.|..+|..|++.|+
T Consensus        23 ~~~~VlvvG~GglGs~va~~La~~Gv   48 (240)
T TIGR02355        23 KASRVLIVGLGGLGCAASQYLAAAGV   48 (240)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCC
Confidence            45899999999999999999999986

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=92.02  E-value=0.032  Score=44.65  Aligned_cols=26  Identities=27%  Similarity=0.417  Sum_probs=22.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||||-+|--||+-.+-+|+
T Consensus        66 ~~fDVLIIGGGAtGaGcALDA~TRGL   91 (680)
T KOG0042|consen   66 HEFDVLIIGGGATGAGCALDAATRGL   91 (680)
T ss_pred             CcccEEEECCCccCcceeehhhcccc
Confidence            45999999999999999988877764

>TIGR03452 mycothione_red mycothione reductase

Probab=92.00  E-value=0.23  Score=37.01  Aligned_cols=25  Identities=24%  Similarity=0.462  Sum_probs=22.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|||+|+.|+.+|..|++.|.
T Consensus       169 ~k~vvVIGgG~ig~E~A~~l~~~G~  193 (452)
T TIGR03452       169 PESLVIVGGGYIAAEFAHVFSALGT  193 (452)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC
Confidence            4689999999999999999998774

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=91.98  E-value=0.26  Score=33.72  Aligned_cols=26  Identities=35%  Similarity=0.500  Sum_probs=24.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+.+|+|||+|-.|...|..|++.|+
T Consensus        20 ~~~~VlivG~GglGs~va~~La~~Gv   45 (228)
T cd00757          20 KNARVLVVGAGGLGSPAAEYLAAAGV   45 (228)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCC
Confidence            45899999999999999999999986

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=91.98  E-value=0.24  Score=33.78  Aligned_cols=26  Identities=42%  Similarity=0.500  Sum_probs=22.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....|+|||+|.+|..-+..|.+.|.
T Consensus         8 ~gk~vlVvGgG~va~rk~~~Ll~~ga   33 (205)
T TIGR01470         8 EGRAVLVVGGGDVALRKARLLLKAGA   33 (205)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCC
Confidence            35789999999999999999988773

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.96  E-value=0.22  Score=34.85  Aligned_cols=24  Identities=25%  Similarity=0.367  Sum_probs=21.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..|+|||+|..|...|..|+++|+
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~   27 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGF   27 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCC
Confidence            469999999999999999999885

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=91.87  E-value=0.16  Score=39.76  Aligned_cols=24  Identities=25%  Similarity=0.375  Sum_probs=21.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      +++.-|||+|+|+|++|.+|-|.+
T Consensus         2 ~~~AyivGsGiAsLAAAvfLIrDa   25 (500)
T PF06100_consen    2 NKKAYIVGSGIASLAAAVFLIRDA   25 (500)
T ss_pred             CceEEEECCCHHHHHhhhhhhccC
Confidence            467889999999999999997765

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=91.85  E-value=0.24  Score=33.04  Aligned_cols=27  Identities=33%  Similarity=0.329  Sum_probs=22.8

Q ss_pred             ccccCEEEECCCH-HHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGP-VGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~-aGl~~A~~L~~~G~   67 (68)
                      -..++|+|||+|- +|..+|..|.++|.
T Consensus        42 l~gk~vlViG~G~~~G~~~a~~L~~~g~   69 (168)
T cd01080          42 LAGKKVVVVGRSNIVGKPLAALLLNRNA   69 (168)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHhhCCC
Confidence            3568999999995 79999999988874

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=91.82  E-value=0.25  Score=35.72  Aligned_cols=23  Identities=30%  Similarity=0.567  Sum_probs=20.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .|.|||+|..|.++|+.|..+++
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~   23 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGL   23 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCC
Confidence            48999999999999999988775

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=91.81  E-value=0.23  Score=34.20  Aligned_cols=23  Identities=35%  Similarity=0.579  Sum_probs=21.6

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +++|||+|..|...|-.|.++|+
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~   24 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGH   24 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCC
Confidence            68999999999999999999985

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=91.81  E-value=0.24  Score=36.95  Aligned_cols=25  Identities=20%  Similarity=0.325  Sum_probs=22.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|..|+-+|..|.+.|.
T Consensus       272 gk~VvVIGgG~~a~d~A~~l~~~G~  296 (449)
T TIGR01316       272 GKSVVVIGGGNTAVDSARTALRLGA  296 (449)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC
Confidence            4689999999999999999998874

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK12831 putative oxidoreductase; Provisional

Probab=91.80  E-value=0.24  Score=37.26  Aligned_cols=26  Identities=27%  Similarity=0.335  Sum_probs=23.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+|+|||+|..|+-+|..|.+.|.
T Consensus       280 ~gk~VvVIGgG~va~d~A~~l~r~Ga  305 (464)
T PRK12831        280 VGKKVAVVGGGNVAMDAARTALRLGA  305 (464)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHHcCC
Confidence            34799999999999999999998874

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=91.71  E-value=0.29  Score=33.48  Aligned_cols=26  Identities=31%  Similarity=0.505  Sum_probs=23.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....|+|||+|-.|...|..|++.|+
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~~Gv   52 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALARSGV   52 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHcCC
Confidence            45899999999999999999999986

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=91.69  E-value=0.11  Score=36.95  Aligned_cols=26  Identities=31%  Similarity=0.524  Sum_probs=23.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+|+|+|+|-+|-++++.|++.|+
T Consensus       126 ~~k~vlIlGaGGaaraia~aL~~~G~  151 (284)
T PRK12549        126 SLERVVQLGAGGAGAAVAHALLTLGV  151 (284)
T ss_pred             cCCEEEEECCcHHHHHHHHHHHHcCC
Confidence            34789999999999999999998885

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.65  E-value=0.25  Score=37.39  Aligned_cols=25  Identities=40%  Similarity=0.640  Sum_probs=22.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...|+|+|.|.+|++++..|+++|.
T Consensus        12 ~~~v~V~G~G~sG~aa~~~L~~~G~   36 (488)
T PRK03369         12 GAPVLVAGAGVTGRAVLAALTRFGA   36 (488)
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCCC
Confidence            3579999999999999999998885

>PTZ00052 thioredoxin reductase; Provisional

Probab=91.65  E-value=0.25  Score=37.39  Aligned_cols=25  Identities=40%  Similarity=0.513  Sum_probs=22.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|||+|+.|+-+|..|++.|.
T Consensus       182 ~~~vvIIGgG~iG~E~A~~l~~~G~  206 (499)
T PTZ00052        182 PGKTLIVGASYIGLETAGFLNELGF  206 (499)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC
Confidence            3589999999999999999998774

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=91.64  E-value=0.32  Score=32.85  Aligned_cols=26  Identities=35%  Similarity=0.542  Sum_probs=23.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+..|+|||+|-.|...|..|++.|+
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv   45 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGV   45 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCC
Confidence            46899999999999999999999986

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=91.64  E-value=0.27  Score=35.97  Aligned_cols=26  Identities=42%  Similarity=0.552  Sum_probs=23.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....|+|||+|-.|..+|..|++.|+
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~aGv   48 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRAGI   48 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCC
Confidence            45789999999999999999999986

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=91.60  E-value=0.3  Score=35.28  Aligned_cols=26  Identities=35%  Similarity=0.507  Sum_probs=23.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....|+|||+|-.|-++|+.|..+|+
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l~~~~~   30 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYALVNQGI   30 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCC
Confidence            34689999999999999999988876

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.59  E-value=0.29  Score=34.27  Aligned_cols=24  Identities=25%  Similarity=0.354  Sum_probs=22.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+|+|||+|..|...|..|+++|+
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~   28 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGY   28 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCC
Confidence            569999999999999999999885

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=91.58  E-value=0.26  Score=35.43  Aligned_cols=24  Identities=25%  Similarity=0.415  Sum_probs=21.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..|.|||+|..|...|+.|+.+|+
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~   25 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKEL   25 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCC
Confidence            369999999999999999998775

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=91.57  E-value=0.28  Score=36.66  Aligned_cols=25  Identities=32%  Similarity=0.591  Sum_probs=22.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|+.|+.+|..|++.|.
T Consensus       183 ~~~vvVvGgG~~g~E~A~~l~~~g~  207 (475)
T PRK06327        183 PKKLAVIGAGVIGLELGSVWRRLGA  207 (475)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC
Confidence            4699999999999999999988764

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=91.55  E-value=0.26  Score=36.48  Aligned_cols=25  Identities=24%  Similarity=0.494  Sum_probs=22.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|||+|+.|+.+|..+++.|.
T Consensus       166 ~~~vvVIGgG~~g~E~A~~l~~~G~  190 (446)
T TIGR01424       166 PKSILILGGGYIAVEFAGIWRGLGV  190 (446)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCC
Confidence            4689999999999999999988774

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.54  E-value=0.27  Score=34.39  Aligned_cols=23  Identities=26%  Similarity=0.543  Sum_probs=21.4

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +|.|||+|..|...|..|+++|+
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~G~   25 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVSGF   25 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhCCC
Confidence            58999999999999999999886

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=91.54  E-value=0.24  Score=37.50  Aligned_cols=24  Identities=25%  Similarity=0.331  Sum_probs=21.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ..+|+|||+|..|+-+|..|++.+
T Consensus       351 gk~VvVVGgG~~g~e~A~~L~~~~  374 (517)
T PRK15317        351 GKRVAVIGGGNSGVEAAIDLAGIV  374 (517)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcC
Confidence            468999999999999999998765

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=91.54  E-value=0.26  Score=33.97  Aligned_cols=23  Identities=30%  Similarity=0.577  Sum_probs=21.0

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +|+|||+|-.|...|..|++.|.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~   24 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGH   24 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC
Confidence            48999999999999999998875

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=91.49  E-value=0.24  Score=35.11  Aligned_cols=22  Identities=23%  Similarity=0.563  Sum_probs=19.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHH
Q 035312           43 VVPVLIVGAGPVGLVLSILLTK   64 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~   64 (68)
                      ..+|+|||+|++|+.+|..|++
T Consensus       145 ~~~vvVvG~G~~g~E~A~~l~~  166 (364)
T TIGR03169       145 TKRLAVVGGGAAGVEIALALRR  166 (364)
T ss_pred             CceEEEECCCHHHHHHHHHHHH
Confidence            3589999999999999999874

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>TIGR00518 alaDH alanine dehydrogenase

Probab=91.48  E-value=0.28  Score=36.21  Aligned_cols=26  Identities=31%  Similarity=0.391  Sum_probs=22.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+|+|+|+|.+|+.++..|.+.|.
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa  191 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGA  191 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCC
Confidence            34679999999999999999988874

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=91.46  E-value=0.27  Score=37.18  Aligned_cols=25  Identities=32%  Similarity=0.400  Sum_probs=22.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|||+|+.|+-+|..|++.|.
T Consensus       180 ~~~vvIIGgG~iG~E~A~~l~~~G~  204 (484)
T TIGR01438       180 PGKTLVVGASYVALECAGFLAGIGL  204 (484)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCC
Confidence            3579999999999999999998774

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=91.46  E-value=0.13  Score=31.26  Aligned_cols=25  Identities=40%  Similarity=0.527  Sum_probs=20.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      +...|+|||+|..|..-+..|.+.|
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~g   30 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAG   30 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCC
Confidence            4688999999999999888887665

>PRK14727 putative mercuric reductase; Provisional

Probab=91.38  E-value=0.27  Score=36.80  Aligned_cols=25  Identities=16%  Similarity=0.340  Sum_probs=22.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|||+|+.|+-+|..|++.|.
T Consensus       188 ~k~vvVIGgG~iG~E~A~~l~~~G~  212 (479)
T PRK14727        188 PASLTVIGSSVVAAEIAQAYARLGS  212 (479)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC
Confidence            3689999999999999999988774

>PRK10262 thioredoxin reductase; Provisional

Probab=91.34  E-value=0.26  Score=34.47  Aligned_cols=25  Identities=16%  Similarity=0.351  Sum_probs=21.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|..|+.+|..|++.+.
T Consensus       146 g~~vvVvGgG~~g~e~A~~l~~~~~  170 (321)
T PRK10262        146 NQKVAVIGGGNTAVEEALYLSNIAS  170 (321)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhCC
Confidence            4689999999999999999987653

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=91.33  E-value=0.29  Score=34.63  Aligned_cols=23  Identities=30%  Similarity=0.511  Sum_probs=21.6

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +|+|||+|..|...|..|+++|+
T Consensus         4 kI~IiG~G~mG~~~A~~L~~~G~   26 (341)
T PRK08229          4 RICVLGAGSIGCYLGGRLAAAGA   26 (341)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCC
Confidence            69999999999999999999886

>PRK08328 hypothetical protein; Provisional

Probab=91.30  E-value=0.34  Score=33.49  Aligned_cols=26  Identities=27%  Similarity=0.478  Sum_probs=23.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+..|+|||+|-.|...|..|++.|+
T Consensus        26 ~~~~VlIiG~GGlGs~ia~~La~~Gv   51 (231)
T PRK08328         26 KKAKVAVVGVGGLGSPVAYYLAAAGV   51 (231)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCC
Confidence            45789999999999999999999986

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.28  E-value=0.29  Score=34.08  Aligned_cols=24  Identities=21%  Similarity=0.367  Sum_probs=21.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+|+|||+|..|...|..++++|+
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~   27 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGY   27 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCC
Confidence            369999999999999999999885

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=91.19  E-value=0.28  Score=36.72  Aligned_cols=24  Identities=21%  Similarity=0.313  Sum_probs=21.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ..+|+|||+|..|+-+|..+.+.|
T Consensus       281 gk~VvVIGgG~~g~e~A~~~~~~g  304 (471)
T PRK12810        281 GKHVVVIGGGDTGMDCVGTAIRQG  304 (471)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcC
Confidence            468999999999999998877766

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=91.14  E-value=0.31  Score=34.65  Aligned_cols=23  Identities=43%  Similarity=0.684  Sum_probs=21.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .|+|||+|-+|.++|+.|+.+|+
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~g~   24 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQGI   24 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCC
Confidence            58999999999999999998874

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=90.96  E-value=0.28  Score=37.62  Aligned_cols=25  Identities=20%  Similarity=0.373  Sum_probs=22.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|+.|+-+|..|++.|.
T Consensus       143 g~~VvVIGgG~~g~E~A~~L~~~g~  167 (555)
T TIGR03143       143 GMDVFVIGGGFAAAEEAVFLTRYAS  167 (555)
T ss_pred             CCEEEEECCCHHHHHHHHHHHccCC
Confidence            4689999999999999999988764

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=90.94  E-value=0.36  Score=35.38  Aligned_cols=26  Identities=35%  Similarity=0.586  Sum_probs=23.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+|+|||+|-.|-..|..|++.|+
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~aGv   48 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRAGV   48 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCC
Confidence            45899999999999999999999986

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=90.94  E-value=0.34  Score=34.47  Aligned_cols=24  Identities=29%  Similarity=0.552  Sum_probs=21.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+|+|+|+|-.|...|..|++.|.
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~   26 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGL   26 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCC
Confidence            469999999999999999999875

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=90.92  E-value=0.39  Score=31.48  Aligned_cols=26  Identities=23%  Similarity=0.289  Sum_probs=22.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+|+|||||..|..-+..|.+.|.
T Consensus        12 ~~~~vlVvGGG~va~rka~~Ll~~ga   37 (157)
T PRK06719         12 HNKVVVIIGGGKIAYRKASGLKDTGA   37 (157)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC
Confidence            46889999999999999988877764

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=90.90  E-value=0.33  Score=36.01  Aligned_cols=26  Identities=19%  Similarity=0.340  Sum_probs=22.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+|+|||+|..|+-+|..|.+.|.
T Consensus       272 ~g~~VvViGgG~~g~e~A~~l~~~G~  297 (457)
T PRK11749        272 VGKRVVVIGGGNTAMDAARTAKRLGA  297 (457)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCC
Confidence            35789999999999999999988764

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=90.89  E-value=0.33  Score=34.01  Aligned_cols=24  Identities=21%  Similarity=0.434  Sum_probs=21.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..|.|||+|..|...|..|+++|+
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~   27 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGY   27 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCC
Confidence            469999999999999999999885

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.84  E-value=0.31  Score=35.72  Aligned_cols=25  Identities=36%  Similarity=0.498  Sum_probs=22.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...++|+|+|.+|+++|..|+++|.
T Consensus         5 ~k~v~v~G~g~~G~s~a~~l~~~G~   29 (447)
T PRK02472          5 NKKVLVLGLAKSGYAAAKLLHKLGA   29 (447)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCC
Confidence            3579999999999999999999985

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=90.77  E-value=0.3  Score=39.78  Aligned_cols=25  Identities=32%  Similarity=0.442  Sum_probs=22.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|||+|+.|+-+|..|++.|.
T Consensus       145 ~k~vvVIGgG~iGlE~A~~L~~~G~  169 (847)
T PRK14989        145 SKRGAVVGGGLLGLEAAGALKNLGV  169 (847)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC
Confidence            3579999999999999999998875

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=90.72  E-value=0.38  Score=35.35  Aligned_cols=25  Identities=20%  Similarity=0.421  Sum_probs=22.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|||+|+.|+.+|..|++.|.
T Consensus       158 ~~~v~ViGgG~~g~E~A~~l~~~g~  182 (441)
T PRK08010        158 PGHLGILGGGYIGVEFASMFANFGS  182 (441)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC
Confidence            4689999999999999999988764

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=90.71  E-value=0.34  Score=36.14  Aligned_cols=25  Identities=28%  Similarity=0.531  Sum_probs=22.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|||+|..|+.+|..|++.|.
T Consensus       177 ~~~vvVIGgG~ig~E~A~~l~~~g~  201 (466)
T PRK07845        177 PEHLIVVGSGVTGAEFASAYTELGV  201 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC
Confidence            3689999999999999999988774

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=90.53  E-value=0.39  Score=33.14  Aligned_cols=26  Identities=35%  Similarity=0.584  Sum_probs=23.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+.+++|+|+|-+|...|..|.+.|+
T Consensus        24 ~~~rvlvlGAGgAg~aiA~~L~~~G~   49 (226)
T cd05311          24 EEVKIVINGAGAAGIAIARLLLAAGA   49 (226)
T ss_pred             cCCEEEEECchHHHHHHHHHHHHcCc
Confidence            34689999999999999999998875

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=90.51  E-value=0.44  Score=31.58  Aligned_cols=23  Identities=39%  Similarity=0.674  Sum_probs=21.3

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +|+|||+|-.|-..|..|++.|+
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gv   23 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGV   23 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCC
Confidence            48999999999999999999986

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=90.47  E-value=0.49  Score=29.68  Aligned_cols=23  Identities=35%  Similarity=0.668  Sum_probs=21.3

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +|+|||+|-.|...|..|.+.|+
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv   23 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGV   23 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Confidence            48999999999999999999886

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=90.45  E-value=0.44  Score=33.31  Aligned_cols=26  Identities=31%  Similarity=0.405  Sum_probs=23.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+..|+|||+|-.|-.+|..|++.|+
T Consensus        10 ~~~~VlVvG~GGvGs~va~~Lar~GV   35 (231)
T cd00755          10 RNAHVAVVGLGGVGSWAAEALARSGV   35 (231)
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcCC
Confidence            45789999999999999999999986

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=90.44  E-value=0.33  Score=36.22  Aligned_cols=24  Identities=17%  Similarity=0.299  Sum_probs=22.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..|.|||.|..|+.+|..|+++|+
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~   27 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQK   27 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCC
Confidence            569999999999999999999885

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=90.42  E-value=0.32  Score=35.79  Aligned_cols=21  Identities=29%  Similarity=0.659  Sum_probs=18.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHH
Q 035312           44 VPVLIVGAGPVGLVLSILLTK   64 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~   64 (68)
                      .+|+|||+|++|+.+|.+|+.
T Consensus       174 ~~vvVvGgG~~GvE~A~~l~~  194 (424)
T PTZ00318        174 LHFVVVGGGPTGVEFAAELAD  194 (424)
T ss_pred             CEEEEECCCHHHHHHHHHHHH
Confidence            389999999999999998864

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=90.39  E-value=0.43  Score=32.26  Aligned_cols=26  Identities=23%  Similarity=0.358  Sum_probs=24.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+..|+|||+|-.|...|..|++.|+
T Consensus        20 ~~s~VlIiG~gglG~evak~La~~GV   45 (197)
T cd01492          20 RSARILLIGLKGLGAEIAKNLVLSGI   45 (197)
T ss_pred             HhCcEEEEcCCHHHHHHHHHHHHcCC
Confidence            45899999999999999999999986

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.35  E-value=0.38  Score=35.90  Aligned_cols=25  Identities=36%  Similarity=0.458  Sum_probs=22.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|.|+|.|.+|+++|..|+++|+
T Consensus        14 ~~~i~v~G~G~sG~a~a~~L~~~G~   38 (458)
T PRK01710         14 NKKVAVVGIGVSNIPLIKFLVKLGA   38 (458)
T ss_pred             CCeEEEEcccHHHHHHHHHHHHCCC
Confidence            4689999999999999999999885

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=90.25  E-value=0.27  Score=35.87  Aligned_cols=26  Identities=27%  Similarity=0.270  Sum_probs=19.4

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ....+|+|||+|.++...+..|.+++
T Consensus       188 ~~~~~V~VVGgGQSAAEi~~~L~~~~  213 (341)
T PF13434_consen  188 LAGKRVAVVGGGQSAAEIFLDLLRRG  213 (341)
T ss_dssp             ---EEEEEE-SSHHHHHHHHHHHHH-
T ss_pred             cCCCeEEEECCcHhHHHHHHHHHhCC
Confidence            35689999999999999999988764

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=90.18  E-value=0.39  Score=36.71  Aligned_cols=27  Identities=26%  Similarity=0.450  Sum_probs=20.9

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +.++||+|+|.|+.-..+|-.|++.|.
T Consensus         2 ~~~yDviI~GTGl~esila~als~~Gk   28 (438)
T PF00996_consen    2 DEEYDVIILGTGLTESILAAALSRSGK   28 (438)
T ss_dssp             -SBESEEEE--SHHHHHHHHHHHHTT-
T ss_pred             CccceEEEECCCcHHHHHHHHHHhcCC
Confidence            357999999999999888889999885

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=90.18  E-value=0.24  Score=38.41  Aligned_cols=22  Identities=27%  Similarity=0.379  Sum_probs=20.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHH
Q 035312           42 AVVPVLIVGAGPVGLVLSILLT   63 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~   63 (68)
                      +.+||+|||+|-+|+.+|+-|+
T Consensus       353 ~gK~VAVIGGGNSGvEAAIDLA  374 (520)
T COG3634         353 KGKRVAVIGGGNSGVEAAIDLA  374 (520)
T ss_pred             CCceEEEECCCcchHHHHHhHH
Confidence            4689999999999999999886

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=90.11  E-value=0.42  Score=36.29  Aligned_cols=26  Identities=27%  Similarity=0.234  Sum_probs=22.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....|+|+|+|+.|+.+|..++..|.
T Consensus       201 ~GktVvViG~G~IG~~va~~ak~~Ga  226 (413)
T cd00401         201 AGKVAVVAGYGDVGKGCAQSLRGQGA  226 (413)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC
Confidence            35789999999999999999988774

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=90.09  E-value=0.42  Score=34.88  Aligned_cols=26  Identities=31%  Similarity=0.500  Sum_probs=22.9

Q ss_pred             ccCEEEECC-CHHHHHHHHHHHHCCCC
Q 035312           43 VVPVLIVGA-GPVGLVLSILLTKLGIF   68 (68)
Q Consensus        43 ~~dV~IVGa-G~aGl~~A~~L~~~G~~   68 (68)
                      ...|.|||+ |..|-++|+.|..++++
T Consensus         3 p~KV~IIGa~G~VG~~~a~~l~~~~~~   29 (323)
T TIGR01759         3 PVRVAVTGAAGQIGYSLLFRIASGELF   29 (323)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCcc
Confidence            468999998 99999999999888763

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PRK08223 hypothetical protein; Validated

Probab=89.97  E-value=0.46  Score=34.58  Aligned_cols=26  Identities=38%  Similarity=0.515  Sum_probs=24.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+..|+|||+|-.|-.+|..|++.|+
T Consensus        26 ~~s~VlIvG~GGLGs~va~~LA~aGV   51 (287)
T PRK08223         26 RNSRVAIAGLGGVGGIHLLTLARLGI   51 (287)
T ss_pred             hcCCEEEECCCHHHHHHHHHHHHhCC
Confidence            45899999999999999999999986

>PLN02507 glutathione reductase

Probab=89.90  E-value=0.44  Score=36.17  Aligned_cols=25  Identities=12%  Similarity=0.364  Sum_probs=22.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|+.|+-+|..|++.|.
T Consensus       203 ~k~vvVIGgG~ig~E~A~~l~~~G~  227 (499)
T PLN02507        203 PKRAVVLGGGYIAVEFASIWRGMGA  227 (499)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCC
Confidence            4689999999999999999988764

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=89.85  E-value=0.46  Score=33.37  Aligned_cols=24  Identities=29%  Similarity=0.605  Sum_probs=21.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+|.|||+|..|...|..|++.|+
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~   28 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGL   28 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCC
Confidence            469999999999999999998875

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=89.75  E-value=0.51  Score=34.99  Aligned_cols=26  Identities=31%  Similarity=0.456  Sum_probs=23.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+..|+|||+|-.|..+|..|++.|+
T Consensus        40 ~~~~VliiG~GglG~~v~~~La~~Gv   65 (370)
T PRK05600         40 HNARVLVIGAGGLGCPAMQSLASAGV   65 (370)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCC
Confidence            45799999999999999999999986

>PRK06223 malate dehydrogenase; Reviewed

Probab=89.75  E-value=0.46  Score=33.46  Aligned_cols=24  Identities=38%  Similarity=0.537  Sum_probs=21.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+|+|||+|..|...|+.++..|+
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~   26 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKEL   26 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC
Confidence            479999999999999999988764

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=89.73  E-value=0.43  Score=34.73  Aligned_cols=25  Identities=32%  Similarity=0.539  Sum_probs=22.2

Q ss_pred             cCEEEECC-CHHHHHHHHHHHHCCCC
Q 035312           44 VPVLIVGA-GPVGLVLSILLTKLGIF   68 (68)
Q Consensus        44 ~dV~IVGa-G~aGl~~A~~L~~~G~~   68 (68)
                      ..|+|||+ |..|-++|+.|...|++
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~   28 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMF   28 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhcccc
Confidence            57999999 99999999999987763

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.66  E-value=0.49  Score=34.91  Aligned_cols=25  Identities=28%  Similarity=0.462  Sum_probs=22.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...|+|+|.|.+|+++|..|+++|.
T Consensus         5 ~~~~~v~G~g~~G~~~a~~l~~~g~   29 (445)
T PRK04308          5 NKKILVAGLGGTGISMIAYLRKNGA   29 (445)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC
Confidence            4579999999999999999999986

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=89.61  E-value=0.54  Score=31.94  Aligned_cols=26  Identities=38%  Similarity=0.422  Sum_probs=22.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....|+|||+|-.|...+..|.+.|.
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~~ga   34 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLKYGA   34 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC
Confidence            45799999999999999988887763

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=89.55  E-value=0.56  Score=31.66  Aligned_cols=26  Identities=38%  Similarity=0.561  Sum_probs=23.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+.+|+|||+|-.|...|..|++.|+
T Consensus        18 ~~s~VlviG~gglGsevak~L~~~GV   43 (198)
T cd01485          18 RSAKVLIIGAGALGAEIAKNLVLAGI   43 (198)
T ss_pred             hhCcEEEECCCHHHHHHHHHHHHcCC
Confidence            45899999999999999999999986

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=89.43  E-value=0.39  Score=35.38  Aligned_cols=23  Identities=43%  Similarity=0.730  Sum_probs=21.4

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +|.|||.|..|+.+|..|+++|+
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~   24 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGH   24 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCC
Confidence            58999999999999999999886

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=89.40  E-value=0.33  Score=37.29  Aligned_cols=23  Identities=35%  Similarity=0.592  Sum_probs=19.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ..|+|||+|.|||+++..+-..|
T Consensus        10 spvvVIGgGLAGLsasn~iin~g   32 (477)
T KOG2404|consen   10 SPVVVIGGGLAGLSASNDIINKG   32 (477)
T ss_pred             CcEEEECCchhhhhhHHHHHhcC
Confidence            37999999999999998875543

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=89.39  E-value=0.48  Score=37.56  Aligned_cols=25  Identities=24%  Similarity=0.308  Sum_probs=22.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|..|+-+|..+.+.|.
T Consensus       570 gk~VvVIGgG~~a~d~A~~~~r~Ga  594 (752)
T PRK12778        570 GKKVAVVGGGNTAMDSARTAKRLGA  594 (752)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCC
Confidence            4789999999999999999988774

>PTZ00117 malate dehydrogenase; Provisional

Probab=89.33  E-value=0.55  Score=33.90  Aligned_cols=26  Identities=19%  Similarity=0.497  Sum_probs=22.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....|+|||+|..|-+.|+.++..|+
T Consensus         4 ~~~KI~IIGaG~vG~~ia~~l~~~~~   29 (319)
T PTZ00117          4 KRKKISMIGAGQIGSTVALLILQKNL   29 (319)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHCCC
Confidence            35689999999999999999988774

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.31  E-value=0.53  Score=35.42  Aligned_cols=25  Identities=36%  Similarity=0.553  Sum_probs=22.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...|+|+|.|-+|+++|..|.++|.
T Consensus        15 ~~~v~v~G~G~sG~a~a~~L~~~G~   39 (473)
T PRK00141         15 SGRVLVAGAGVSGRGIAAMLSELGC   39 (473)
T ss_pred             CCeEEEEccCHHHHHHHHHHHHCCC
Confidence            4569999999999999999999885

>PRK13984 putative oxidoreductase; Provisional

Probab=89.28  E-value=0.46  Score=36.51  Aligned_cols=24  Identities=17%  Similarity=0.439  Sum_probs=21.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ..+|+|||+|..|+-+|..|++.+
T Consensus       418 ~k~VvVIGGG~~g~e~A~~l~r~~  441 (604)
T PRK13984        418 PRSLVVIGGGNVAMDIARSMARLQ  441 (604)
T ss_pred             CCcEEEECCchHHHHHHHHHHhcc
Confidence            479999999999999999998764

>PTZ00058 glutathione reductase; Provisional

Probab=89.12  E-value=0.52  Score=36.72  Aligned_cols=25  Identities=24%  Similarity=0.414  Sum_probs=22.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|..|+-+|..|++.|.
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~  261 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGA  261 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCC
Confidence            5789999999999999999988774

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=89.08  E-value=0.15  Score=39.79  Aligned_cols=21  Identities=29%  Similarity=0.659  Sum_probs=18.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHH
Q 035312           44 VPVLIVGAGPVGLVLSILLTK   64 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~   64 (68)
                      -+++||||||.|+-.|-+|+.
T Consensus       219 Lh~VVVGGGPTGVEFAaEL~D  239 (491)
T KOG2495|consen  219 LHFVVVGGGPTGVEFAAELAD  239 (491)
T ss_pred             EEEEEECCCCcceeehHHHHH
Confidence            579999999999999999864

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=89.06  E-value=0.57  Score=34.38  Aligned_cols=26  Identities=27%  Similarity=0.420  Sum_probs=23.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....|+|||+|-.|..+|..|++.|+
T Consensus        27 ~~~~VlivG~GGlGs~~a~~La~~Gv   52 (355)
T PRK05597         27 FDAKVAVIGAGGLGSPALLYLAGAGV   52 (355)
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCC
Confidence            45899999999999999999999986

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=88.98  E-value=0.38  Score=37.60  Aligned_cols=24  Identities=46%  Similarity=0.721  Sum_probs=21.4

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHH
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTK   64 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~   64 (68)
                      ...+|++|||+|++|+-+|+.++.
T Consensus        16 ~~~~~vvivgag~~g~f~a~~~s~   39 (486)
T COG2509          16 NAALDVVIVGAGPAGLFAAYELSG   39 (486)
T ss_pred             hhccceEEECCCchHHHHHHHHhh
Confidence            356999999999999999999874

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=88.91  E-value=0.54  Score=33.31  Aligned_cols=24  Identities=29%  Similarity=0.494  Sum_probs=22.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..|.|||+|..|...|..+++.|+
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~   29 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGV   29 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCC
Confidence            479999999999999999999886

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=88.85  E-value=0.48  Score=36.34  Aligned_cols=22  Identities=23%  Similarity=0.226  Sum_probs=20.4

Q ss_pred             CEEEECCCHHHHHHHHHHHHCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      +|+|||.|-.|+.+|..|+++|
T Consensus         3 ~I~ViG~GyvGl~~A~~lA~~g   24 (473)
T PLN02353          3 KICCIGAGYVGGPTMAVIALKC   24 (473)
T ss_pred             EEEEECCCHHHHHHHHHHHhcC
Confidence            5999999999999999999875

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=88.80  E-value=0.62  Score=34.17  Aligned_cols=26  Identities=31%  Similarity=0.556  Sum_probs=23.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....|+|||+|-.|..+|..|++.|+
T Consensus       134 ~~~~VlvvG~GG~Gs~ia~~La~~Gv  159 (376)
T PRK08762        134 LEARVLLIGAGGLGSPAALYLAAAGV  159 (376)
T ss_pred             hcCcEEEECCCHHHHHHHHHHHHcCC
Confidence            45789999999999999999999986

>PLN02602 lactate dehydrogenase

Probab=88.72  E-value=0.62  Score=34.44  Aligned_cols=24  Identities=25%  Similarity=0.502  Sum_probs=22.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..|+|||+|-.|-++|+.|..+++
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l   61 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDL   61 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC
Confidence            699999999999999999988775

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=88.69  E-value=0.52  Score=34.69  Aligned_cols=24  Identities=25%  Similarity=0.537  Sum_probs=22.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+|+|||-|.+|+++|..|+++|.
T Consensus         4 ~~i~iiGlG~~G~slA~~l~~~G~   27 (418)
T PRK00683          4 QRVVVLGLGVTGKSIARFLAQKGV   27 (418)
T ss_pred             CeEEEEEECHHHHHHHHHHHHCCC
Confidence            579999999999999999999885

>PLN02546 glutathione reductase

Probab=88.47  E-value=0.6  Score=36.29  Aligned_cols=25  Identities=24%  Similarity=0.337  Sum_probs=21.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|+.|+-+|..|++.|.
T Consensus       252 ~k~V~VIGgG~iGvE~A~~L~~~g~  276 (558)
T PLN02546        252 PEKIAIVGGGYIALEFAGIFNGLKS  276 (558)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCC
Confidence            4689999999999999999987653

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=88.46  E-value=0.61  Score=33.05  Aligned_cols=23  Identities=35%  Similarity=0.592  Sum_probs=21.0

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +|.|||+|-.|...|..|+++|.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~   24 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKI   24 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCC
Confidence            48999999999999999999875

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=88.39  E-value=0.67  Score=35.48  Aligned_cols=26  Identities=31%  Similarity=0.554  Sum_probs=23.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+++|||+|+.|+-.|..+++.|.
T Consensus       172 lP~~lvIiGgG~IGlE~a~~~~~LG~  197 (454)
T COG1249         172 LPKSLVIVGGGYIGLEFASVFAALGS  197 (454)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC
Confidence            45789999999999999999999885

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=88.38  E-value=0.88  Score=26.52  Aligned_cols=25  Identities=36%  Similarity=0.523  Sum_probs=21.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ...+++|+|+|-+|..++..|.+.+
T Consensus        22 ~~~~v~i~G~G~~g~~~a~~l~~~~   46 (86)
T cd05191          22 KGKTVVVLGAGEVGKGIAKLLADEG   46 (86)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC
Confidence            3468999999999999999988764

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=88.34  E-value=0.65  Score=33.96  Aligned_cols=24  Identities=17%  Similarity=0.228  Sum_probs=21.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..|+|||+|..|...|..+++.|+
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~   31 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGL   31 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC
Confidence            469999999999999999999886

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=88.32  E-value=0.65  Score=34.65  Aligned_cols=26  Identities=31%  Similarity=0.561  Sum_probs=22.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....|+|||+|..|..++..|...|.
T Consensus       181 ~~~~vlViGaG~iG~~~a~~L~~~G~  206 (423)
T PRK00045        181 SGKKVLVIGAGEMGELVAKHLAEKGV  206 (423)
T ss_pred             cCCEEEEECchHHHHHHHHHHHHCCC
Confidence            45789999999999999999988774

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=88.27  E-value=0.57  Score=35.99  Aligned_cols=24  Identities=38%  Similarity=0.592  Sum_probs=21.9

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGIF   68 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~~   68 (68)
                      +|.|||.|..||+.|.-|++.|+.
T Consensus         2 kI~viGtGYVGLv~g~~lA~~GHe   25 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAELGHE   25 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHcCCe
Confidence            589999999999999999999863

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=88.12  E-value=0.62  Score=35.07  Aligned_cols=25  Identities=20%  Similarity=-0.060  Sum_probs=22.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+.|+|+|.|-+|.++|..|.++|.
T Consensus         8 ~~~v~v~G~G~sG~~~~~~l~~~g~   32 (468)
T PRK04690          8 GRRVALWGWGREGRAAYRALRAHLP   32 (468)
T ss_pred             CCEEEEEccchhhHHHHHHHHHcCC
Confidence            4679999999999999999999885

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=88.04  E-value=0.76  Score=33.32  Aligned_cols=24  Identities=21%  Similarity=0.492  Sum_probs=21.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..|+|||+|-.|-..|+.++.+|+
T Consensus         7 ~KI~IIGaG~vG~~ia~~la~~gl   30 (321)
T PTZ00082          7 RKISLIGSGNIGGVMAYLIVLKNL   30 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC
Confidence            579999999999999999988875

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=87.97  E-value=0.75  Score=32.03  Aligned_cols=23  Identities=35%  Similarity=0.647  Sum_probs=21.2

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +|.|||+|..|...|..|+++|+
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~   25 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGH   25 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC
Confidence            59999999999999999999875

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=87.94  E-value=0.64  Score=34.99  Aligned_cols=25  Identities=28%  Similarity=0.434  Sum_probs=22.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...|.|+|.|-+|+++|..|+++|+
T Consensus         7 ~~~i~v~G~G~sG~s~a~~L~~~G~   31 (498)
T PRK02006          7 GPMVLVLGLGESGLAMARWCARHGA   31 (498)
T ss_pred             CCEEEEEeecHhHHHHHHHHHHCCC
Confidence            3569999999999999999999985

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=87.92  E-value=0.62  Score=33.25  Aligned_cols=22  Identities=36%  Similarity=0.690  Sum_probs=19.9

Q ss_pred             EEEECCCHHHHHHHHHHHHCCC
Q 035312           46 VLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        46 V~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      |.|||+|-.|.++|+.|+.+|+
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~   22 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGL   22 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCC
Confidence            5799999999999999998875

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=87.88  E-value=0.75  Score=32.44  Aligned_cols=24  Identities=29%  Similarity=0.573  Sum_probs=21.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+|.|||+|..|.+.|..|.+.|+
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~   30 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGL   30 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCC
Confidence            579999999999999999988873

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=87.86  E-value=0.78  Score=34.58  Aligned_cols=27  Identities=30%  Similarity=0.413  Sum_probs=24.0

Q ss_pred             cccCEEEECC-CHHHHHHHHHHHHCCCC
Q 035312           42 AVVPVLIVGA-GPVGLVLSILLTKLGIF   68 (68)
Q Consensus        42 ~~~dV~IVGa-G~aGl~~A~~L~~~G~~   68 (68)
                      ....|.|||+ |..|-++|+.|...+++
T Consensus        43 ~p~KV~IIGAaG~VG~~~A~~l~~~~l~   70 (387)
T TIGR01757        43 KTVNVAVSGAAGMISNHLLFMLASGEVF   70 (387)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhcccc
Confidence            4589999999 99999999999988764

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=87.81  E-value=0.77  Score=34.28  Aligned_cols=26  Identities=27%  Similarity=0.491  Sum_probs=22.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....|+|||+|..|..++..|...|+
T Consensus       179 ~~~~VlViGaG~iG~~~a~~L~~~G~  204 (417)
T TIGR01035       179 KGKKALLIGAGEMGELVAKHLLRKGV  204 (417)
T ss_pred             cCCEEEEECChHHHHHHHHHHHHCCC
Confidence            34789999999999999999988873

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=87.79  E-value=0.75  Score=33.04  Aligned_cols=23  Identities=43%  Similarity=0.657  Sum_probs=21.0

Q ss_pred             CEEEECC-CHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGA-GPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGa-G~aGl~~A~~L~~~G~   67 (68)
                      +|+|+|+ |..|..+|..|+..|+
T Consensus         2 kI~IiGatG~vG~~~a~~l~~~g~   25 (309)
T cd05294           2 KVSIIGASGRVGSATALLLAKEDV   25 (309)
T ss_pred             EEEEECCCChHHHHHHHHHHhCCC
Confidence            5899998 9999999999998875

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=87.75  E-value=0.51  Score=35.73  Aligned_cols=25  Identities=20%  Similarity=0.208  Sum_probs=21.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ..++|+|||+|.+|+-.|.+|++.+
T Consensus       203 ~gk~VvVVG~G~Sg~diA~~L~~~a  227 (461)
T PLN02172        203 KNEVVVVIGNFASGADISRDIAKVA  227 (461)
T ss_pred             CCCEEEEECCCcCHHHHHHHHHHhC
Confidence            3478999999999999999998654

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=87.73  E-value=0.34  Score=33.75  Aligned_cols=25  Identities=32%  Similarity=0.395  Sum_probs=22.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...++|+|+|-+|.+.+..|++.|.
T Consensus       117 ~k~vliiGaGg~g~aia~~L~~~g~  141 (270)
T TIGR00507       117 NQRVLIIGAGGAARAVALPLLKADC  141 (270)
T ss_pred             CCEEEEEcCcHHHHHHHHHHHHCCC
Confidence            4679999999999999999988774

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=87.73  E-value=0.75  Score=36.68  Aligned_cols=25  Identities=36%  Similarity=0.401  Sum_probs=22.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|+.|+-.|..|++.|.
T Consensus       312 pk~VvIVGgG~iGvE~A~~l~~~G~  336 (659)
T PTZ00153        312 QNYMGIVGMGIIGLEFMDIYTALGS  336 (659)
T ss_pred             CCceEEECCCHHHHHHHHHHHhCCC
Confidence            4689999999999999999988764

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=87.69  E-value=0.85  Score=31.87  Aligned_cols=25  Identities=44%  Similarity=0.638  Sum_probs=20.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|+|+|+.|+.++..++..|.
T Consensus       145 ~~~vlV~G~G~vG~~a~q~ak~~G~  169 (308)
T TIGR01202       145 VLPDLIVGHGTLGRLLARLTKAAGG  169 (308)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC
Confidence            3579999999999999887777664

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=87.59  E-value=0.81  Score=33.29  Aligned_cols=23  Identities=39%  Similarity=0.550  Sum_probs=20.6

Q ss_pred             CEEEECC-CHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGA-GPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGa-G~aGl~~A~~L~~~G~   67 (68)
                      .|+|||+ |-.|.++|+.|..+++
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~   24 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPY   24 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCC
Confidence            4899999 9999999999988765

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=87.52  E-value=0.69  Score=34.17  Aligned_cols=24  Identities=33%  Similarity=0.548  Sum_probs=22.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      --|+|+|.|-+|+++|..|+++|+
T Consensus         7 ~~~~v~G~G~sG~s~a~~L~~~G~   30 (448)
T PRK03803          7 GLHIVVGLGKTGLSVVRFLARQGI   30 (448)
T ss_pred             CeEEEEeecHhHHHHHHHHHhCCC
Confidence            459999999999999999999986

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=87.52  E-value=0.6  Score=32.59  Aligned_cols=21  Identities=38%  Similarity=0.637  Sum_probs=18.0

Q ss_pred             EEEECCCHHHHHHHHHHHHCC
Q 035312           46 VLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        46 V~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ++|||+|++|+.+|..|.+..
T Consensus         1 ivivG~g~aG~~aa~~l~~~~   21 (415)
T COG0446           1 IVIVGGGAAGLSAATTLRRLL   21 (415)
T ss_pred             CEEECCcHHHHHHHHHHHhcC
Confidence            589999999999999877643

>PRK05442 malate dehydrogenase; Provisional

Probab=87.42  E-value=0.73  Score=33.68  Aligned_cols=26  Identities=27%  Similarity=0.443  Sum_probs=22.3

Q ss_pred             ccCEEEECC-CHHHHHHHHHHHHCCCC
Q 035312           43 VVPVLIVGA-GPVGLVLSILLTKLGIF   68 (68)
Q Consensus        43 ~~dV~IVGa-G~aGl~~A~~L~~~G~~   68 (68)
                      ...|.|||+ |..|-++|+.|...+++
T Consensus         4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~   30 (326)
T PRK05442          4 PVRVAVTGAAGQIGYSLLFRIASGDML   30 (326)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhhhhc
Confidence            358999998 99999999999877653

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=87.40  E-value=0.85  Score=31.92  Aligned_cols=24  Identities=33%  Similarity=0.477  Sum_probs=21.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..|.|||+|..|...|..|++.|+
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~   28 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGM   28 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCC
Confidence            469999999999999999998885

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=87.37  E-value=0.88  Score=32.23  Aligned_cols=26  Identities=31%  Similarity=0.409  Sum_probs=23.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+++|+|+|=++-++++.|++.|.
T Consensus       124 ~~k~vlvlGaGGaarai~~aL~~~G~  149 (282)
T TIGR01809       124 AGFRGLVIGAGGTSRAAVYALASLGV  149 (282)
T ss_pred             CCceEEEEcCcHHHHHHHHHHHHcCC
Confidence            35689999999999999999998885

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=87.36  E-value=0.39  Score=33.73  Aligned_cols=26  Identities=31%  Similarity=0.469  Sum_probs=22.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+++|+|+|-+|.+.+..|++.|+
T Consensus       122 ~~k~vlVlGaGg~a~ai~~aL~~~g~  147 (278)
T PRK00258        122 KGKRILILGAGGAARAVILPLLDLGV  147 (278)
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHcCC
Confidence            34689999999999999999998873

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=87.33  E-value=0.68  Score=32.74  Aligned_cols=22  Identities=41%  Similarity=0.625  Sum_probs=19.8

Q ss_pred             EEEECCCHHHHHHHHHHHHCCC
Q 035312           46 VLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        46 V~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      |.|||+|-.|...|+.|+.+|+
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l   22 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKEL   22 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCC
Confidence            5899999999999999988775

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=87.32  E-value=0.75  Score=36.14  Aligned_cols=26  Identities=19%  Similarity=0.328  Sum_probs=22.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+|+|||+|..|+-+|..+.+.|.
T Consensus       322 ~gk~VvVIGgG~~a~e~A~~l~~~Ga  347 (652)
T PRK12814        322 PGKKVVVIGGGNTAIDAARTALRLGA  347 (652)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCC
Confidence            35789999999999999999988763

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=87.20  E-value=0.92  Score=33.67  Aligned_cols=26  Identities=31%  Similarity=0.524  Sum_probs=23.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....|+|||+|=.|..+|..|++.|+
T Consensus        41 ~~~~VlviG~GGlGs~va~~La~~Gv   66 (392)
T PRK07878         41 KNARVLVIGAGGLGSPTLLYLAAAGV   66 (392)
T ss_pred             hcCCEEEECCCHHHHHHHHHHHHcCC
Confidence            45799999999999999999999986

>PRK07411 hypothetical protein; Validated

Probab=87.20  E-value=0.89  Score=33.82  Aligned_cols=26  Identities=35%  Similarity=0.572  Sum_probs=23.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....|+|||+|-.|-.+|..|++.|+
T Consensus        37 ~~~~VlivG~GGlG~~va~~La~~Gv   62 (390)
T PRK07411         37 KAASVLCIGTGGLGSPLLLYLAAAGI   62 (390)
T ss_pred             hcCcEEEECCCHHHHHHHHHHHHcCC
Confidence            45899999999999999999999986

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=87.18  E-value=0.75  Score=34.85  Aligned_cols=23  Identities=39%  Similarity=0.694  Sum_probs=21.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      .+|+|+|+|-.|..+|..|+++|
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~   24 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNG   24 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCC
Confidence            47999999999999999999987

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=87.16  E-value=0.93  Score=32.43  Aligned_cols=26  Identities=35%  Similarity=0.521  Sum_probs=23.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+++|+|.|.+|..++..|++.|.
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~Ga  176 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKALGA  176 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC
Confidence            35789999999999999999998774

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=87.11  E-value=0.48  Score=36.29  Aligned_cols=25  Identities=24%  Similarity=0.401  Sum_probs=22.0

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      ..++.|+|||||-.|+..|..+.++
T Consensus        37 ~~h~kvLVvGGGsgGi~~A~k~~rk   61 (446)
T KOG3851|consen   37 RKHFKVLVVGGGSGGIGMAAKFYRK   61 (446)
T ss_pred             ccceEEEEEcCCcchhHHHHHHHhh
Confidence            4679999999999999999888664

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=87.08  E-value=0.62  Score=35.05  Aligned_cols=25  Identities=28%  Similarity=0.456  Sum_probs=22.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ..++|+|||+|-+|.-.|.+|++.|
T Consensus       174 ~GKrV~VIG~GaSA~di~~~l~~~g  198 (443)
T COG2072         174 RGKRVLVIGAGASAVDIAPELAEVG  198 (443)
T ss_pred             CCCeEEEECCCccHHHHHHHHHhcC
Confidence            3489999999999999999998875

>cd00704 MDH Malate dehydrogenase

Probab=87.01  E-value=0.83  Score=33.27  Aligned_cols=24  Identities=42%  Similarity=0.670  Sum_probs=21.3

Q ss_pred             CEEEECC-CHHHHHHHHHHHHCCCC
Q 035312           45 PVLIVGA-GPVGLVLSILLTKLGIF   68 (68)
Q Consensus        45 dV~IVGa-G~aGl~~A~~L~~~G~~   68 (68)
                      .|+|||+ |..|-.+|+.|..++++
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~   26 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELF   26 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCcc
Confidence            5899999 99999999999987753

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=86.98  E-value=0.82  Score=33.02  Aligned_cols=22  Identities=45%  Similarity=0.791  Sum_probs=20.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      .|+|+|+|-.|...|+.|++.|
T Consensus         2 kI~IlGaGAvG~l~g~~L~~~g   23 (307)
T COG1893           2 KILILGAGAIGSLLGARLAKAG   23 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHhCC
Confidence            5899999999999999999988

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=86.93  E-value=0.85  Score=33.21  Aligned_cols=23  Identities=39%  Similarity=0.580  Sum_probs=20.8

Q ss_pred             CEEEECC-CHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGA-GPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGa-G~aGl~~A~~L~~~G~   67 (68)
                      .|+|||+ |-.|.++|+.|..+++
T Consensus         2 KI~IIGaaG~VG~~~a~~l~~~~~   25 (310)
T cd01337           2 KVAVLGAAGGIGQPLSLLLKLNPL   25 (310)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCC
Confidence            5899999 9999999999988775

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=86.77  E-value=0.8  Score=32.00  Aligned_cols=23  Identities=39%  Similarity=0.508  Sum_probs=20.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +|.|||.|..|.+.|..|.++|+
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~   24 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGH   24 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCC
Confidence            48999999999999999998875

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=86.73  E-value=0.93  Score=35.10  Aligned_cols=27  Identities=19%  Similarity=0.254  Sum_probs=23.9

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..++|.+|||+|-.|+++|...+..|.
T Consensus        18 ~k~fDylvIGgGSGGvasARrAa~~GA   44 (478)
T KOG0405|consen   18 VKDFDYLVIGGGSGGVASARRAASHGA   44 (478)
T ss_pred             ccccceEEEcCCcchhHHhHHHHhcCc
Confidence            457999999999999999999888764

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=86.68  E-value=0.96  Score=32.38  Aligned_cols=25  Identities=32%  Similarity=0.461  Sum_probs=21.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ...+|+|||+|..|..++..|...|
T Consensus       177 ~~~~V~ViGaG~iG~~~a~~L~~~g  201 (311)
T cd05213         177 KGKKVLVIGAGEMGELAAKHLAAKG  201 (311)
T ss_pred             cCCEEEEECcHHHHHHHHHHHHHcC
Confidence            4578999999999999998887755

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=86.57  E-value=1.1  Score=30.46  Aligned_cols=25  Identities=20%  Similarity=0.385  Sum_probs=21.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+.|+|||.|-.|.+.|..|+.+|+
T Consensus         4 ~k~IAViGyGsQG~a~AlNLrDSG~   28 (165)
T PF07991_consen    4 GKTIAVIGYGSQGHAHALNLRDSGV   28 (165)
T ss_dssp             TSEEEEES-SHHHHHHHHHHHHCC-
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCC
Confidence            5789999999999999999999986

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK04148 hypothetical protein; Provisional

Probab=86.57  E-value=0.54  Score=30.77  Aligned_cols=24  Identities=17%  Similarity=0.249  Sum_probs=21.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..++++||.| .|...|..|++.|+
T Consensus        17 ~~kileIG~G-fG~~vA~~L~~~G~   40 (134)
T PRK04148         17 NKKIVELGIG-FYFKVAKKLKESGF   40 (134)
T ss_pred             CCEEEEEEec-CCHHHHHHHHHCCC
Confidence            3579999999 99988999999885

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=86.55  E-value=0.84  Score=35.66  Aligned_cols=26  Identities=35%  Similarity=0.471  Sum_probs=22.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+|+|+|+|++|+.++..+...|.
T Consensus       163 p~akVlViGaG~iGl~Aa~~ak~lGA  188 (511)
T TIGR00561       163 PPAKVLVIGAGVAGLAAIGAANSLGA  188 (511)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC
Confidence            34789999999999999998888763

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=86.55  E-value=1.3  Score=27.56  Aligned_cols=24  Identities=38%  Similarity=0.522  Sum_probs=21.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ..+++|+|+|..|...+..|.+.|
T Consensus        19 ~~~i~iiG~G~~g~~~a~~l~~~g   42 (155)
T cd01065          19 GKKVLILGAGGAARAVAYALAELG   42 (155)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCC
Confidence            468999999999999999998875

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=86.14  E-value=1.3  Score=29.16  Aligned_cols=26  Identities=31%  Similarity=0.597  Sum_probs=22.0

Q ss_pred             cccCEEEECC-CHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGA-GPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGa-G~aGl~~A~~L~~~G~   67 (68)
                      ....++|+|+ |..|..++..|.+.|.
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~   53 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGA   53 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC
Confidence            3478999997 9999999999988763

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=86.14  E-value=1.2  Score=31.96  Aligned_cols=25  Identities=36%  Similarity=0.534  Sum_probs=22.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+.++|+|+|=++-+.++.|++.|.
T Consensus       127 ~k~vlilGaGGaarAi~~aL~~~g~  151 (283)
T PRK14027        127 LDSVVQVGAGGVGNAVAYALVTHGV  151 (283)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHCCC
Confidence            4689999999999999999998875

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=86.11  E-value=1.1  Score=34.50  Aligned_cols=26  Identities=23%  Similarity=0.296  Sum_probs=22.4

Q ss_pred             cccCEEEECC-CHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGA-GPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGa-G~aGl~~A~~L~~~G~   67 (68)
                      ....|+|||+ |..|-++|+.|...++
T Consensus        99 ~~~KV~IIGAaG~VG~~~A~~L~~~~v  125 (444)
T PLN00112         99 KLINVAVSGAAGMISNHLLFKLASGEV  125 (444)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhccc
Confidence            3468999999 9999999999988743

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=86.02  E-value=0.36  Score=31.05  Aligned_cols=27  Identities=37%  Similarity=0.530  Sum_probs=21.8

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+.+|.|||+|-.|-.++..|.+.|+
T Consensus         8 ~~~l~I~iIGaGrVG~~La~aL~~ag~   34 (127)
T PF10727_consen    8 AARLKIGIIGAGRVGTALARALARAGH   34 (127)
T ss_dssp             ----EEEEECTSCCCCHHHHHHHHTTS
T ss_pred             CCccEEEEECCCHHHHHHHHHHHHCCC
Confidence            345799999999999999999999885

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>COG4716 Myosin-crossreactive antigen [Function unknown]

Probab=85.97  E-value=0.27  Score=38.45  Aligned_cols=27  Identities=26%  Similarity=0.375  Sum_probs=22.9

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+++.+-|||+|+|||++|..|-|.|.
T Consensus        20 VdqKsaY~vG~GlAsLA~AvfLIRDg~   46 (587)
T COG4716          20 VDQKSAYIVGGGLASLAAAVFLIRDGQ   46 (587)
T ss_pred             cccceeEEEccchHhhhheeEEEeccc
Confidence            355889999999999999999877663

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=85.90  E-value=1.1  Score=31.92  Aligned_cols=23  Identities=35%  Similarity=0.641  Sum_probs=21.4

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +|.|||+|.-|...|..|+++|+
T Consensus         6 ~I~iIG~G~mG~~ia~~L~~~G~   28 (328)
T PRK14618          6 RVAVLGAGAWGTALAVLAASKGV   28 (328)
T ss_pred             eEEEECcCHHHHHHHHHHHHCCC
Confidence            69999999999999999999885

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=85.89  E-value=0.97  Score=37.38  Aligned_cols=25  Identities=20%  Similarity=0.311  Sum_probs=22.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|.+|+-+|..+.+.|.
T Consensus       447 Gk~VvVIGGG~tA~D~A~ta~R~Ga  471 (944)
T PRK12779        447 GKEVFVIGGGNTAMDAARTAKRLGG  471 (944)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC
Confidence            4789999999999999999998874

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=85.60  E-value=1.1  Score=32.61  Aligned_cols=23  Identities=26%  Similarity=0.550  Sum_probs=20.7

Q ss_pred             CEEEECC-CHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGA-GPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGa-G~aGl~~A~~L~~~G~   67 (68)
                      +|+|||+ |..|-++|+.|..+++
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~   24 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRM   24 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccc
Confidence            5899999 9999999999988765

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=85.54  E-value=1.1  Score=33.86  Aligned_cols=25  Identities=20%  Similarity=0.223  Sum_probs=20.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ...+|+|||+|..|+-+|..+.+.|
T Consensus       282 ~gk~VvViGgG~~g~d~a~~a~~~g  306 (485)
T TIGR01317       282 KGKKVVVIGGGDTGADCVGTSLRHG  306 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcC
Confidence            3478999999999999987776665

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=85.49  E-value=0.84  Score=33.96  Aligned_cols=25  Identities=32%  Similarity=0.614  Sum_probs=22.3

Q ss_pred             ccCEEEECCCHHHHH-HHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLV-LSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~-~A~~L~~~G~   67 (68)
                      ..+|.|+|.|-+|++ +|..|+++|.
T Consensus         7 ~~~v~viG~G~sG~s~~a~~L~~~G~   32 (461)
T PRK00421          7 IKRIHFVGIGGIGMSGLAEVLLNLGY   32 (461)
T ss_pred             CCEEEEEEEchhhHHHHHHHHHhCCC
Confidence            357999999999999 6999999986

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=85.41  E-value=1.2  Score=31.55  Aligned_cols=25  Identities=36%  Similarity=0.461  Sum_probs=22.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ...+|+|||+|-.|-..+..|++.|
T Consensus        10 ~~~~V~vvG~GGlGs~v~~~Lar~G   34 (244)
T TIGR03736        10 RPVSVVLVGAGGTGSQVIAGLARLH   34 (244)
T ss_pred             CCCeEEEEcCChHHHHHHHHHHHcc
Confidence            4689999999999999999999875

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=85.34  E-value=1.3  Score=31.39  Aligned_cols=26  Identities=15%  Similarity=0.225  Sum_probs=22.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....++|+|+|=+|.++|+.|++.|.
T Consensus       125 ~~k~vlI~GAGGagrAia~~La~~G~  150 (289)
T PRK12548        125 KGKKLTVIGAGGAATAIQVQCALDGA  150 (289)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC
Confidence            34679999999999999999998875

>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=85.16  E-value=1.1  Score=34.69  Aligned_cols=23  Identities=52%  Similarity=0.872  Sum_probs=20.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      .+|+|+|+||+++-+|.-+.+.+
T Consensus         2 ~~VLI~GtGPvAiQLAv~lk~~~   24 (429)
T PF10100_consen    2 GNVLIVGTGPVAIQLAVILKKHG   24 (429)
T ss_pred             CceEEEcCCHHHHHHHHHHHhcc
Confidence            36999999999999999987654

>PLN02852 ferredoxin-NADP+ reductase

Probab=84.98  E-value=1.2  Score=34.48  Aligned_cols=23  Identities=22%  Similarity=0.338  Sum_probs=20.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      ..+|+|||+|..|+-+|..|.+.
T Consensus       166 gk~VvVIGgGnvAlD~Ar~L~~~  188 (491)
T PLN02852        166 SDTAVVLGQGNVALDCARILLRP  188 (491)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC
Confidence            46899999999999999998775

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=84.96  E-value=1.3  Score=32.11  Aligned_cols=24  Identities=21%  Similarity=0.455  Sum_probs=21.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ..+|+|+|+|.-|.+.|..|+++|
T Consensus         7 ~mkI~IiGaGa~G~alA~~La~~g   30 (341)
T PRK12439          7 EPKVVVLGGGSWGTTVASICARRG   30 (341)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCC
Confidence            357999999999999999999887

>cd08230 glucose_DH Glucose dehydrogenase

Probab=84.95  E-value=1.5  Score=30.95  Aligned_cols=25  Identities=40%  Similarity=0.757  Sum_probs=21.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|+|+|+.|+.++..++..|.
T Consensus       173 g~~vlI~G~G~vG~~a~q~ak~~G~  197 (355)
T cd08230         173 PRRALVLGAGPIGLLAALLLRLRGF  197 (355)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC
Confidence            4689999999999999887777663

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=84.88  E-value=1.5  Score=31.04  Aligned_cols=24  Identities=33%  Similarity=0.415  Sum_probs=22.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+|.|||+|-.|...|..|.++|+
T Consensus         5 m~I~iiG~G~~G~~lA~~l~~~G~   28 (308)
T PRK14619          5 KTIAILGAGAWGSTLAGLASANGH   28 (308)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC
Confidence            469999999999999999999885

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=84.77  E-value=1.3  Score=32.27  Aligned_cols=23  Identities=39%  Similarity=0.533  Sum_probs=21.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +|+|+|+|..|...|..|.++|+
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~   24 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENN   24 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC
Confidence            58999999999999999998875

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=84.74  E-value=1.3  Score=32.16  Aligned_cols=24  Identities=29%  Similarity=0.531  Sum_probs=21.1

Q ss_pred             cCEEEECC-CHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGA-GPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGa-G~aGl~~A~~L~~~G~   67 (68)
                      ..|+|+|+ |..|-++|+.|..+++
T Consensus         3 ~kV~I~GAaG~VG~~la~~L~~~~~   27 (325)
T cd01336           3 IRVLVTGAAGQIAYSLLPMIAKGDV   27 (325)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCcc
Confidence            56999999 9999999999987664

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=84.71  E-value=1.7  Score=29.31  Aligned_cols=26  Identities=31%  Similarity=0.335  Sum_probs=23.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....|+|+|.|-.|..+|..|.+.|.
T Consensus        27 ~gk~v~I~G~G~vG~~~A~~L~~~G~   52 (200)
T cd01075          27 EGKTVAVQGLGKVGYKLAEHLLEEGA   52 (200)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC
Confidence            45789999999999999999999885

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>TIGR00936 ahcY adenosylhomocysteinase

Probab=84.61  E-value=1.3  Score=33.57  Aligned_cols=26  Identities=23%  Similarity=0.302  Sum_probs=22.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....|+|+|.|+.|..+|..++..|.
T Consensus       194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga  219 (406)
T TIGR00936       194 AGKTVVVAGYGWCGKGIAMRARGMGA  219 (406)
T ss_pred             CcCEEEEECCCHHHHHHHHHHhhCcC
Confidence            45789999999999999999987764

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PLN00106 malate dehydrogenase

Probab=84.55  E-value=1.7  Score=31.78  Aligned_cols=26  Identities=31%  Similarity=0.470  Sum_probs=22.7

Q ss_pred             cccCEEEECC-CHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGA-GPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGa-G~aGl~~A~~L~~~G~   67 (68)
                      ....|+|||+ |-.|-++|+.|..+++
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~   43 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPL   43 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC
Confidence            3468999999 9999999999987765

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=84.48  E-value=1.2  Score=33.02  Aligned_cols=25  Identities=28%  Similarity=0.292  Sum_probs=22.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|.|+|.|-+|+++|..|.++|+
T Consensus         9 ~~~i~viG~G~~G~~~a~~l~~~G~   33 (460)
T PRK01390          9 GKTVAVFGLGGSGLATARALVAGGA   33 (460)
T ss_pred             CCEEEEEeecHhHHHHHHHHHHCCC
Confidence            3579999999999999999999986

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=84.45  E-value=1.4  Score=34.11  Aligned_cols=26  Identities=27%  Similarity=0.331  Sum_probs=22.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....++|+|+|-+|.++++.|++.|.
T Consensus       378 ~~k~vlIlGaGGagrAia~~L~~~G~  403 (529)
T PLN02520        378 AGKLFVVIGAGGAGKALAYGAKEKGA  403 (529)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC
Confidence            34689999999999999999999884

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=84.26  E-value=1.7  Score=29.85  Aligned_cols=25  Identities=36%  Similarity=0.465  Sum_probs=21.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...|+|+|+|+.|+.++..++..|.
T Consensus       121 g~~VlV~G~G~vG~~~~~~ak~~G~  145 (280)
T TIGR03366       121 GRRVLVVGAGMLGLTAAAAAAAAGA  145 (280)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC
Confidence            4579999999999999888877764

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PRK08017 oxidoreductase; Provisional

Probab=84.19  E-value=1.6  Score=28.79  Aligned_cols=24  Identities=33%  Similarity=0.531  Sum_probs=21.2

Q ss_pred             cCEEEECC-CHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGA-GPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGa-G~aGl~~A~~L~~~G~   67 (68)
                      ..++|+|+ |..|..+|..|+++|.
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~   27 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGY   27 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC
Confidence            35999999 9999999999998874

>PRK06153 hypothetical protein; Provisional

Probab=84.16  E-value=1.1  Score=34.10  Aligned_cols=26  Identities=23%  Similarity=0.307  Sum_probs=23.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....|+|||+|=.|-..+..|++.|+
T Consensus       175 ~~~~VaIVG~GG~GS~Va~~LAR~GV  200 (393)
T PRK06153        175 EGQRIAIIGLGGTGSYILDLVAKTPV  200 (393)
T ss_pred             hhCcEEEEcCCccHHHHHHHHHHcCC
Confidence            34799999999999999999999986

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=84.16  E-value=1.6  Score=31.09  Aligned_cols=24  Identities=21%  Similarity=0.382  Sum_probs=22.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+++|+|+|=++.++++.|++.|.
T Consensus       123 ~~vlilGaGGaarAi~~aL~~~g~  146 (272)
T PRK12550        123 LVVALRGSGGMAKAVAAALRDAGF  146 (272)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCC
Confidence            479999999999999999998875

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=84.10  E-value=1.6  Score=31.71  Aligned_cols=23  Identities=35%  Similarity=0.530  Sum_probs=21.3

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +|+|||+|-.|...+..|++.|+
T Consensus         1 kVlVVGaGGlG~eilknLal~Gv   23 (291)
T cd01488           1 KILVIGAGGLGCELLKNLALSGF   23 (291)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCC
Confidence            48999999999999999999886

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=84.01  E-value=2  Score=27.16  Aligned_cols=22  Identities=41%  Similarity=0.591  Sum_probs=19.8

Q ss_pred             EEEECC-CHHHHHHHHHHHHCCC
Q 035312           46 VLIVGA-GPVGLVLSILLTKLGI   67 (68)
Q Consensus        46 V~IVGa-G~aGl~~A~~L~~~G~   67 (68)
                      |+|+|| |..|-..+.+|.++|+
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~   23 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGH   23 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTS
T ss_pred             eEEECCCChHHHHHHHHHHHCCC
Confidence            789998 9999999999988874

...

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=83.99  E-value=1.5  Score=31.28  Aligned_cols=26  Identities=23%  Similarity=0.483  Sum_probs=22.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....++|+|.|-+|...|..|+..|.
T Consensus       150 ~gk~v~IiG~G~iG~avA~~L~~~G~  175 (287)
T TIGR02853       150 HGSNVMVLGFGRTGMTIARTFSALGA  175 (287)
T ss_pred             CCCEEEEEcChHHHHHHHHHHHHCCC
Confidence            35789999999999999999988774

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=83.69  E-value=1.5  Score=34.29  Aligned_cols=24  Identities=17%  Similarity=0.277  Sum_probs=21.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ..+|+|||+|..|+-+|..+.+.|
T Consensus       468 gk~VvVIGgG~~a~d~A~~a~r~g  491 (654)
T PRK12769        468 GLNVVVLGGGDTAMDCVRTALRHG  491 (654)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcC
Confidence            468999999999999998887776

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=83.52  E-value=1.7  Score=31.42  Aligned_cols=27  Identities=30%  Similarity=0.385  Sum_probs=24.3

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+.+|+|||+|-.|..+|..|+..|+
T Consensus        17 L~~s~VLIvG~gGLG~EiaKnLalaGV   43 (286)
T cd01491          17 LQKSNVLISGLGGLGVEIAKNLILAGV   43 (286)
T ss_pred             HhcCcEEEEcCCHHHHHHHHHHHHcCC
Confidence            346899999999999999999999886

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=83.48  E-value=1.6  Score=33.12  Aligned_cols=22  Identities=23%  Similarity=0.339  Sum_probs=18.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHH
Q 035312           43 VVPVLIVGAGPVGLVLSILLTK   64 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~   64 (68)
                      ..+++|||+|+.|+-+|..+++
T Consensus       187 ~~~vvIIGgG~iG~E~A~~~~~  208 (486)
T TIGR01423       187 PRRVLTVGGGFISVEFAGIFNA  208 (486)
T ss_pred             CCeEEEECCCHHHHHHHHHHHH
Confidence            4689999999999999976653

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=83.43  E-value=1.4  Score=32.26  Aligned_cols=23  Identities=35%  Similarity=0.599  Sum_probs=20.9

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .|.|||.|-+|+++|..|+++|+
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~~G~   23 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHKKGA   23 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHHCCC
Confidence            37899999999999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	68
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	3e-08
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	3e-08
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	7e-08
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	7e-08
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	8e-08
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	1e-07
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	8e-07
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	1e-06
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	2e-05
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	5e-05
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	2e-04
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	3e-04
2bry_A	497	NEDD9 interacting protein with calponin homology a	3e-04
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	5e-04
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	5e-04
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	7e-04
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	8e-04
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	9e-04

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} Length = 570

 Score = 47.4 bits (113), Expect = 3e-08
 Identities = 13/46 (28%), Positives = 20/46 (43%)

Query: 22 PYGYTPCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGI 67
               P R +  +           V++VG GPVGL+L+  L   G+
Sbjct: 28 DDDKDPGRRMMHNSNADDAALTTDVVVVGGGPVGLMLAGELRAGGV 73

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} Length = 535

 Score = 47.0 bits (112), Expect = 3e-08
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 40 NEAVVPVLIVGAGPVGLVLSILLTKLGI 67
          N+  V VL+VGAG  GL  ++ L + G+
Sbjct: 2  NDHEVDVLVVGAGLGGLSTAMFLARQGV 29

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* Length = 549

 Score = 46.2 bits (110), Expect = 7e-08
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 44 VPVLIVGAGPVGLVLSILLTKLGI 67
            VLI+G GPVG+ L++ L    +
Sbjct: 27 TDVLILGGGPVGMALALDLAHRQV 50

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... Length = 394

 Score = 45.8 bits (109), Expect = 7e-08
 Identities = 14/24 (58%), Positives = 16/24 (66%)

Query: 44 VPVLIVGAGPVGLVLSILLTKLGI 67
            V I+GAGP GL+L  LL K GI
Sbjct: 3  TQVAIIGAGPSGLLLGQLLHKAGI 26

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} Length = 500

 Score = 45.7 bits (109), Expect = 8e-08
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 39 SNEAVVPVLIVGAGPVGLVLSILLTKLGI 67
           + +   V++VGAGP G++L+  L   G+
Sbjct: 7  HHRSDAAVIVVGAGPAGMMLAGELRLAGV 35

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} Length = 499

 Score = 45.7 bits (109), Expect = 1e-07
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 39 SNEAVVPVLIVGAGPVGLVLSILLTKLGI 67
           + +   V++VGAGP GL+L+  L   G+
Sbjct: 8  HHRSDASVIVVGAGPAGLMLAGELRLGGV 36

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* Length = 665

 Score = 43.1 bits (101), Expect = 8e-07
 Identities = 12/28 (42%), Positives = 19/28 (67%)

Query: 39 SNEAVVPVLIVGAGPVGLVLSILLTKLG 66
           +E+   VLIVGAGP GL+ + +L++  
Sbjct: 4  YSESYCDVLIVGAGPAGLMAARVLSEYV 31

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* Length = 639

 Score = 42.6 bits (100), Expect = 1e-06
 Identities = 12/28 (42%), Positives = 15/28 (53%)

Query: 39 SNEAVVPVLIVGAGPVGLVLSILLTKLG 66
          +  + V VLIVG GP GL L+  L    
Sbjct: 28 AVPSQVDVLIVGCGPAGLTLAAQLAAFP 55

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Length = 398

 Score = 38.9 bits (91), Expect = 2e-05
 Identities = 12/22 (54%), Positives = 16/22 (72%)

Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
          V I+G GPVGL ++ LL + GI
Sbjct: 29 VAIIGGGPVGLTMAKLLQQNGI 50

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} Length = 399

 Score = 38.0 bits (89), Expect = 5e-05
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
          VLI G G  G +L+ LL + G 
Sbjct: 9  VLINGCGIGGAMLAYLLGRQGH 30

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Length = 591

 Score = 36.1 bits (83), Expect = 2e-04
 Identities = 11/22 (50%), Positives = 13/22 (59%)

Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
          V I+G GP G V  + L KLG 
Sbjct: 26 VAIIGGGPAGSVAGLTLHKLGH 47

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369

 Score = 35.9 bits (83), Expect = 3e-04
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 44 VPVLIVGAGPVGLVLSILLTKLGI 67
            V I+GAG  G+ ++I L   GI
Sbjct: 5  HKVAIIGAGAAGIGMAITLKDFGI 28

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* Length = 497

 Score = 35.9 bits (82), Expect = 3e-04
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 44  VPVLIVGAGPVGLVLSILLTKLG 66
              L+VGAGP GL  ++ L  LG
Sbjct: 93  TKCLVVGAGPCGLRAAVELALLG 115

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} Length = 381

 Score = 35.1 bits (80), Expect = 5e-04
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
          +L++GAGP GLV +  L +   
Sbjct: 3  ILVIGAGPAGLVFASQLKQARP 24

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512

 Score = 35.3 bits (81), Expect = 5e-04
 Identities = 6/22 (27%), Positives = 12/22 (54%)

Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
          ++++G GP G  L+  +   G 
Sbjct: 10 LIVIGGGPGGSTLASFVAMRGH 31

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421

 Score = 34.8 bits (80), Expect = 7e-04
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
          VL++GAGP G V + L+ K G 
Sbjct: 8  VLVIGAGPAGTVAASLVNKSGF 29

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Length = 397

 Score = 34.7 bits (79), Expect = 8e-04
 Identities = 11/22 (50%), Positives = 12/22 (54%)

Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
           LIVGAG  G VL+  L   G 
Sbjct: 32 YLIVGAGFAGSVLAERLASSGQ 53

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Length = 367

 Score = 34.7 bits (79), Expect = 9e-04
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
           +IVG+G  G V +  L KL  
Sbjct: 4  YIIVGSGLFGAVCANELKKLNK 25

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	68
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.09
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.87
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.67
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.54
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.53
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.47
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	98.45
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.44
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.44
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	98.42
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.41
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.38
3dme_A	369	Conserved exported protein; structural genomics, P	98.35
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.34
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.33
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.31
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	98.3
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.29
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.29
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.29
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.28
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	98.27
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.26
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	98.26
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.25
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.25
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	98.24
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.24
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.24
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	98.24
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.24
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	98.23
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.23
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.22
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.22
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.22
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.21
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.21
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	98.21
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.2
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	98.2
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	98.19
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.19
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	98.18
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	98.18
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.18
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	98.17
3atr_A	453	Conserved archaeal protein; saturating double bond	98.17
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.16
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.16
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.15
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	98.15
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.15
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	98.15
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	98.14
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.14
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.14
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	98.14
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.14
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.13
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	98.13
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.12
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.12
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	98.12
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	98.12
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	98.11
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	98.11
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	98.11
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.11
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.1
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	98.1
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	98.09
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	98.09
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	98.08
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.07
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.07
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	98.07
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	98.07
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	98.07
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.07
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.06
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.05
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	98.04
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.04
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.04
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.04
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	98.03
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.03
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.03
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	98.03
4dna_A	463	Probable glutathione reductase; structural genomic	98.02
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.02
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.01
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	98.01
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	98.0
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.99
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	97.99
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	97.98
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.98
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	97.98
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.97
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	97.97
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	97.97
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	97.97
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	97.96
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.96
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	97.96
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	97.96
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	97.95
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	97.95
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	97.94
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	97.94
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	97.93
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	97.91
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	97.91
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	97.91
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	97.9
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	97.9
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.9
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	97.9
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	97.9
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.89
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	97.89
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	97.89
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.89
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.88
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	97.88
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.88
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	97.87
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	97.87
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	97.87
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	97.87
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.87
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	97.87
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	97.87
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.86
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.86
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	97.86
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	97.86
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	97.86
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.86
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	97.85
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.85
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	97.84
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	97.83
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	97.83
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	97.83
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	97.82
1ojt_A	482	Surface protein; redox-active center, glycolysis,	97.82
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	97.82
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	97.81
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	97.8
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	97.79
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	97.79
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.79
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	97.79
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	97.79
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	97.79
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.78
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	97.78
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.77
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.76
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	97.76
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	97.73
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	97.72
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	97.71
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	97.71
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	97.71
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	97.7
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	97.7
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.7
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	97.69
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.63
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	97.62
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	97.62
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	97.61
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.59
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	97.57
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.57
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	97.56
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.55
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	97.55
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	97.53
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.53
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.52
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.5
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	97.49
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	97.49
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.47
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.47
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.45
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	97.43
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	97.43
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.42
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.42
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	97.41
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.4
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.4
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	97.35
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	97.35
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	97.31
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	97.25
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	97.18
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	97.17
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	97.15
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	97.1
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	97.07
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	96.98
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	96.95
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	96.89
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	96.74
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	96.48
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	95.72
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	95.53
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	95.15
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	95.14
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	95.13
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	94.99
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	94.93
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	94.89
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	94.89
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	94.87
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	94.83
1id1_A	153	Putative potassium channel protein; RCK domain, E.	94.77
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	94.72
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	94.71
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	94.69
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	94.6
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	94.59
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	94.5
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	94.4
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	94.32
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	94.19
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	94.15
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	94.09
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	94.0
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	93.91
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	93.9
3c85_A	183	Putative glutathione-regulated potassium-efflux S	93.76
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	93.72
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	93.67
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	93.6
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	93.56
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	93.43
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	93.41
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	93.31
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	93.24
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	93.23
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	93.17
1ojt_A	482	Surface protein; redox-active center, glycolysis,	93.15
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	93.09
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	93.09
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	93.01
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	92.97
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	92.97
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	92.85
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	92.83
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	92.75
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	92.75
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	92.73
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	92.69
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	92.58
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	92.58
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	92.53
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	92.52
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	92.49
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	92.48
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	92.48
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	92.45
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	92.44
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	92.4
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	92.39
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	92.34
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	92.25
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	92.25
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	92.24
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	92.2
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	92.14
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	92.14
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	92.13
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	92.13
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	92.12
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	92.12
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	92.08
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	92.04
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	92.01
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	91.98
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	91.97
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	91.87
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	91.83
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	91.72
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	91.71
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	91.69
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	91.66
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	91.62
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	91.54
3r9u_A	315	Thioredoxin reductase; structural genomics, center	91.53
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	91.5
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	91.5
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	91.5
3tl2_A	315	Malate dehydrogenase; center for structural genomi	91.44
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	91.44
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	91.41
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	91.4
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	91.38
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	91.3
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	91.29
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	91.24
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	91.22
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	91.18
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	91.15
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	91.14
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	91.13
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	91.09
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	91.07
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	90.93
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	90.88
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	90.84
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	90.78
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	90.72
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	90.71
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	90.67
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	90.65
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	90.5
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	90.48
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	90.42
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	90.42
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	90.4
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	90.38
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	90.38
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	90.33
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	90.22
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	90.21
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	90.2
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	90.16
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	90.13
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	90.06
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	89.96
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	89.94
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	89.87
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	89.84
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	89.8
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	89.79
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	89.78
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	89.73
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	89.62
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	89.59
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	89.58
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	89.58
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	89.56
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	89.44
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	89.4
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	89.38
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	89.36
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	89.35
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	89.33
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	89.32
1fec_A	490	Trypanothione reductase; redox-active center, oxid	89.31
4dna_A	463	Probable glutathione reductase; structural genomic	89.3
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	89.22
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	89.18
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	89.15
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	89.05
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	88.98
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	88.96
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	88.91
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	88.87
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	88.78
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	88.75
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	88.71
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	88.66
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	88.65
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	88.55
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	88.53
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	88.43
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	88.42
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	88.28
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	88.17
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	88.11
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	88.09
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	88.02
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	87.99
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	87.97
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	87.94
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	87.92
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	87.75
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	87.74
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	87.74
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	87.71
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	87.67
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	87.55
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	87.54
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	87.41
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	87.39
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	87.38
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	87.28
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	87.27
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	87.24
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	87.18
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	87.16
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	87.09
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	87.08
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	86.84
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	86.83
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	86.83
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	86.73
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	86.61
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	86.59
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	86.58
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	86.57
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	86.54
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	86.51
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	86.39
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	86.31
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	86.13
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	86.08
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	86.03
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	85.98
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	85.96
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	85.91
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	85.89
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	85.81
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	85.74
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	85.72
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	85.7
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	85.7
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	85.61
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	85.47
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	85.46
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	85.37
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	85.36
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	85.29
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	85.21
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	85.13
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	85.12
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	85.12
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	85.04
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	85.03
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	84.94
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	84.93
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	84.88
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	84.82
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	84.79
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	84.79
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	84.71
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	84.67
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	84.65
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	84.64
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	84.63
3qha_A	296	Putative oxidoreductase; seattle structural genomi	84.62
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	84.55
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	84.48
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	84.41
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	84.4
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	84.38
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	84.35
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	84.32
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	84.26
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	84.23
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	84.2
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	84.19
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	84.1
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	84.06
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	84.03
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	84.02
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	83.98
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	83.97
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	83.91
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	83.88
4ezb_A	317	Uncharacterized conserved protein; structural geno	83.79
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	83.76
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	83.73
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	83.63
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	83.63
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	83.5
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	83.49
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	83.44
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	83.42
2nvu_B	805	Maltose binding protein/NEDD8-activating enzyme E1	83.39
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	83.39
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	83.26
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	83.24
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	83.18
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	83.08
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	82.99
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	82.94
3ax6_A	380	Phosphoribosylaminoimidazole carboxylase, ATPase;	82.88
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	82.78
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	82.71
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	82.69
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	82.69
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	82.63
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	82.54
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	82.52
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	82.49
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	82.29
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	82.23
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	82.16
3nkl_A	141	UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo	82.14
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	82.13

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.09  E-value=8e-11  Score=71.97  Aligned_cols=26  Identities=38%  Similarity=0.570  Sum_probs=24.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGIF   68 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~~   68 (68)
                      ++||+||||||+||+||+.|+++|+.
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G~~   27 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAGHQ   27 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCC
Confidence            48999999999999999999999973

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.87  E-value=1.1e-09  Score=74.23  Aligned_cols=28  Identities=32%  Similarity=0.463  Sum_probs=25.7

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGIF   68 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~~   68 (68)
                      ++++||+||||||+|+++|+.|+++|+.
T Consensus         2 Me~yDViIVGaGpaGl~~A~~La~~G~~   29 (397)
T 3oz2_A            2 METYDVLVVGGGPGGSTAARYAAKYGLK   29 (397)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCc
Confidence            4679999999999999999999999973

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.67  E-value=1.3e-08  Score=68.83  Aligned_cols=28  Identities=29%  Similarity=0.503  Sum_probs=23.9

Q ss_pred             CccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           40 NEAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        40 ~~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++++||+|||+||+||+||+.|+|+|+
T Consensus         3 ~M~~yDVvIIGaGpAGlsAA~~lar~g~   30 (304)
T 4fk1_A            3 AMKYIDCAVIGAGPAGLNASLVLGRARK   30 (304)
T ss_dssp             ---CEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCCcCEEEECCCHHHHHHHHHHHHCCC
Confidence            3678999999999999999999999886

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.54  E-value=5.2e-08  Score=65.53  Aligned_cols=26  Identities=23%  Similarity=0.583  Sum_probs=24.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+|||+|||+||+|++||+.|++.|+
T Consensus         5 ~~yDvvIIG~GpAGl~aA~~l~~~g~   30 (312)
T 4gcm_A            5 IDFDIAIIGAGPAGMTAAVYASRANL   30 (312)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCC
Confidence            46999999999999999999999986

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.53  E-value=5.9e-08  Score=64.71  Aligned_cols=25  Identities=28%  Similarity=0.586  Sum_probs=23.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+||+|||+|||||+||+.|+++|+
T Consensus         4 ~yDvvIIG~GpAGl~AA~~la~~g~   28 (314)
T 4a5l_A            4 IHDVVIIGSGPAAHTAAIYLGRSSL   28 (314)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC
Confidence            4899999999999999999999986

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.47  E-value=9.5e-08  Score=63.80  Aligned_cols=27  Identities=30%  Similarity=0.479  Sum_probs=24.4

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+||+|||+|++||++|+.|+++|+
T Consensus        20 ~~~~~vvIIG~G~aGl~aA~~l~~~g~   46 (338)
T 3itj_A           20 HVHNKVTIIGSGPAAHTAAIYLARAEI   46 (338)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCC
Confidence            456999999999999999999999986

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=98.45  E-value=9.9e-08  Score=67.63  Aligned_cols=27  Identities=41%  Similarity=0.693  Sum_probs=23.7

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHC-CC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKL-GI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~-G~   67 (68)
                      +.++||+|||||++||+||+.|+++ |+
T Consensus         8 ~~~~DVvIIGaGisGLsaA~~L~k~~G~   35 (513)
T 4gde_A            8 DISVDVLVIGAGPTGLGAAKRLNQIDGP   35 (513)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHCCS
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhhCCC
Confidence            3569999999999999999999874 75

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.44  E-value=1.3e-07  Score=65.99  Aligned_cols=27  Identities=30%  Similarity=0.562  Sum_probs=23.9

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+++||+||||||+||++|+.|+++|+
T Consensus        21 ~~~~dV~IVGaG~aGl~~A~~La~~G~   47 (407)
T 3rp8_A           21 QGHMKAIVIGAGIGGLSAAVALKQSGI   47 (407)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC
Confidence            456999999999999999999999986

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.44  E-value=1.2e-07  Score=64.95  Aligned_cols=26  Identities=42%  Similarity=0.648  Sum_probs=22.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHH--CCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTK--LGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~--~G~   67 (68)
                      .++||+|||+||+||+||++|++  .|+
T Consensus        64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~   91 (326)
T 3fpz_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDL   91 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCC
Confidence            45899999999999999999975  364

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.41  E-value=1.8e-07  Score=64.02  Aligned_cols=27  Identities=19%  Similarity=0.377  Sum_probs=24.8

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +.++||+|||||++|+++|+.|+++|+
T Consensus        15 ~~~~dvvIIGgG~~Gl~~A~~La~~G~   41 (382)
T 1ryi_A           15 KRHYEAVVIGGGIIGSAIAYYLAKENK   41 (382)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHhCCC
Confidence            456999999999999999999999986

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=98.35  E-value=2.9e-07  Score=61.95  Aligned_cols=25  Identities=32%  Similarity=0.546  Sum_probs=23.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ++||+|||+|++|+++|+.|+++|+
T Consensus         4 ~~dvvIIG~G~~Gl~~A~~La~~G~   28 (369)
T 3dme_A            4 DIDCIVIGAGVVGLAIARALAAGGH   28 (369)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC
Confidence            5899999999999999999999986

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.34  E-value=3e-07  Score=62.71  Aligned_cols=23  Identities=48%  Similarity=0.497  Sum_probs=22.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +|+||||||+||++|+.|+++|+
T Consensus         3 ~V~IVGaGpaGl~~A~~L~~~G~   25 (412)
T 4hb9_A            3 HVGIIGAGIGGTCLAHGLRKHGI   25 (412)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCC
Confidence            69999999999999999999997

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.33  E-value=3e-07  Score=63.82  Aligned_cols=26  Identities=46%  Similarity=0.765  Sum_probs=24.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||||++|+++|+.|+++|+
T Consensus         4 ~~~dVvIIGgG~aGl~~A~~La~~G~   29 (421)
T 3nix_A            4 EKVDVLVIGAGPAGTVAASLVNKSGF   29 (421)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTC
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhCCC
Confidence            35899999999999999999999986

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.31  E-value=4.1e-07  Score=67.93  Aligned_cols=26  Identities=42%  Similarity=0.682  Sum_probs=22.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+||||||+||++|+.|+++|+
T Consensus        48 ~~~DVvIVGaG~aGL~~A~~La~~G~   73 (570)
T 3fmw_A           48 LTTDVVVVGGGPVGLMLAGELRAGGV   73 (570)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC
Confidence            46899999999999999999999986

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=98.30  E-value=4.2e-07  Score=62.92  Aligned_cols=25  Identities=36%  Similarity=0.620  Sum_probs=23.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ++||+|||||++|+++|+.|+++|+
T Consensus         4 ~~DVvIIGaG~~Gl~~A~~La~~G~   28 (397)
T 2oln_A            4 SYDVVVVGGGPVGLATAWQVAERGH   28 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCC
Confidence            4899999999999999999999986

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.29  E-value=6.3e-07  Score=59.07  Aligned_cols=26  Identities=42%  Similarity=0.566  Sum_probs=24.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +++||+|||+|++|+.+|+.|++.|+
T Consensus         2 ~~~dVvVVGgG~aGl~aA~~la~~g~   27 (232)
T 2cul_A            2 AAYQVLIVGAGFSGAETAFWLAQKGV   27 (232)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC
Confidence            35899999999999999999999886

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.29  E-value=4.9e-07  Score=62.50  Aligned_cols=25  Identities=56%  Similarity=0.864  Sum_probs=23.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ++||+||||||+|+++|+.|+++|+
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~   26 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGI   26 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCC
Confidence            4799999999999999999999886

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=98.29  E-value=6.4e-07  Score=65.54  Aligned_cols=28  Identities=36%  Similarity=0.597  Sum_probs=25.5

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGIF   68 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~~   68 (68)
                      ..++||+||||||+||++|+.|+++|+.
T Consensus         9 ~~~~dVlIVGaGpaGl~~A~~La~~G~~   36 (500)
T 2qa1_A            9 RSDAAVIVVGAGPAGMMLAGELRLAGVE   36 (500)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCC
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHCCCC
Confidence            4679999999999999999999999873

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.28  E-value=5.4e-07  Score=63.13  Aligned_cols=26  Identities=38%  Similarity=0.602  Sum_probs=23.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+||||||+||++|+.|+++|+
T Consensus         3 ~~~dVvIVGaG~aGl~~A~~L~~~G~   28 (410)
T 3c96_A            3 EPIDILIAGAGIGGLSCALALHQAGI   28 (410)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCC
Confidence            35899999999999999999999986

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=98.27  E-value=6.7e-07  Score=62.74  Aligned_cols=26  Identities=35%  Similarity=0.517  Sum_probs=24.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||||++|+++|+.|+++|+
T Consensus         5 ~~~dVvIIGgG~aGlsaA~~La~~G~   30 (438)
T 3dje_A            5 KSSSLLIVGAGTWGTSTALHLARRGY   30 (438)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCC
Confidence            45899999999999999999999986

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.26  E-value=6.3e-07  Score=62.55  Aligned_cols=26  Identities=23%  Similarity=0.488  Sum_probs=24.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+||+||||||+||++|+.|+++|+
T Consensus         4 ~~~~V~IVGaG~aGl~~A~~L~~~G~   29 (397)
T 2vou_A            4 TTDRIAVVGGSISGLTAALMLRDAGV   29 (397)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC
Confidence            45899999999999999999999986

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=98.26  E-value=5.3e-07  Score=64.14  Aligned_cols=25  Identities=44%  Similarity=0.615  Sum_probs=23.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGIF   68 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~~   68 (68)
                      ++|+|||||++||+||+.|+++|+.
T Consensus         2 k~VvVIGaG~~GL~aA~~La~~G~~   26 (501)
T 4dgk_A            2 KPTTVIGAGFGGLALAIRLQAAGIP   26 (501)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCc
Confidence            6899999999999999999999963

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.25  E-value=7.2e-07  Score=64.32  Aligned_cols=27  Identities=30%  Similarity=0.624  Sum_probs=23.1

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +.++||+|||+||+|+++|..|+++|+
T Consensus        23 m~~~dVvVIGgG~aGl~aA~~la~~G~   49 (491)
T 3urh_A           23 MMAYDLIVIGSGPGGYVCAIKAAQLGM   49 (491)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHHTTC
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHCCC
Confidence            456999999999999999999999885

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.25  E-value=8.4e-07  Score=58.69  Aligned_cols=26  Identities=23%  Similarity=0.404  Sum_probs=24.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+||+|||+|++||++|+.|+++|+
T Consensus        14 ~~~~vvIIG~G~aGl~aA~~l~~~g~   39 (323)
T 3f8d_A           14 EKFDVIIVGLGPAAYGAALYSARYML   39 (323)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CccCEEEECccHHHHHHHHHHHHCCC
Confidence            35899999999999999999999885

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=98.24  E-value=4.9e-07  Score=64.48  Aligned_cols=26  Identities=35%  Similarity=0.530  Sum_probs=23.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+||+||||||+|+++|+.|+++|+
T Consensus        21 m~~~ViIVGaGpaGl~~A~~La~~G~   46 (430)
T 3ihm_A           21 MKKRIGIVGAGTAGLHLGLFLRQHDV   46 (430)
T ss_dssp             --CEEEEECCHHHHHHHHHHHHHTTC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCC
Confidence            45899999999999999999999986

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.24  E-value=7.3e-07  Score=59.57  Aligned_cols=26  Identities=31%  Similarity=0.631  Sum_probs=23.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+||+|||+|++|+++|+.|+++|+
T Consensus         2 ~~~~vvIIG~G~aGl~~A~~l~~~g~   27 (357)
T 4a9w_A            2 DSVDVVVIGGGQSGLSAGYFLRRSGL   27 (357)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHSSC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCC
Confidence            35899999999999999999999886

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.24  E-value=7.3e-07  Score=62.25  Aligned_cols=27  Identities=44%  Similarity=0.695  Sum_probs=24.5

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +.++||+||||||+||++|+.|+++|+
T Consensus        24 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   50 (398)
T 2xdo_A           24 LSDKNVAIIGGGPVGLTMAKLLQQNGI   50 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCC
Confidence            346899999999999999999999986

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.24  E-value=1e-06  Score=60.38  Aligned_cols=26  Identities=27%  Similarity=0.503  Sum_probs=24.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||+|++|+++|+.|+++|+
T Consensus         4 ~~~dVvIIGgGi~Gl~~A~~La~~G~   29 (382)
T 1y56_B            4 EKSEIVVIGGGIVGVTIAHELAKRGE   29 (382)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCC
Confidence            35899999999999999999999986

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.24  E-value=7.5e-07  Score=67.04  Aligned_cols=28  Identities=39%  Similarity=0.605  Sum_probs=25.3

Q ss_pred             CccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           40 NEAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        40 ~~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+.++||+|||||++|+++|+.|+++|+
T Consensus        20 ~M~~~DVvIVGgG~AGl~aA~~Lar~G~   47 (591)
T 3i3l_A           20 HMTRSKVAIIGGGPAGSVAGLTLHKLGH   47 (591)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHcCCC
Confidence            3557999999999999999999999985

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=98.23  E-value=8.1e-07  Score=60.74  Aligned_cols=25  Identities=36%  Similarity=0.667  Sum_probs=23.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ++||+|||+|++|+++|+.|+++|+
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~~G~   27 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAKQGV   27 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC
Confidence            5899999999999999999999986

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.23  E-value=7.2e-07  Score=58.97  Aligned_cols=26  Identities=38%  Similarity=0.723  Sum_probs=23.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+||+|||+|++||++|..|+++|+
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~~g~   28 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATRGGL   28 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCC
Confidence            45899999999999999999999885

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.22  E-value=8.9e-07  Score=60.74  Aligned_cols=26  Identities=27%  Similarity=0.616  Sum_probs=23.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||+|++|+++|+.|+++|.
T Consensus         5 ~~~dVvVIG~Gi~Gls~A~~La~~G~   30 (363)
T 1c0p_A            5 SQKRVVVLGSGVIGLSSALILARKGY   30 (363)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCC
Confidence            35899999999999999999999885

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.22  E-value=8e-07  Score=61.68  Aligned_cols=25  Identities=40%  Similarity=0.550  Sum_probs=23.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ++||+|||||++|+++|+.|+++|+
T Consensus         6 ~~dVvIVGaG~aGl~~A~~L~~~G~   30 (399)
T 2x3n_A            6 HIDVLINGCGIGGAMLAYLLGRQGH   30 (399)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCC
Confidence            5899999999999999999999986

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.22  E-value=7.7e-07  Score=65.09  Aligned_cols=28  Identities=39%  Similarity=0.567  Sum_probs=24.9

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGIF   68 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~~   68 (68)
                      ..++||+||||||+||++|+.|+++|+.
T Consensus        10 ~~~~dVlIVGaGpaGl~~A~~La~~G~~   37 (499)
T 2qa2_A           10 RSDASVIVVGAGPAGLMLAGELRLGGVD   37 (499)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCC
Confidence            3568999999999999999999999873

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.21  E-value=8.9e-07  Score=61.32  Aligned_cols=26  Identities=27%  Similarity=0.359  Sum_probs=23.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+||+|||||++|+++|+.|+++|+
T Consensus        10 ~~~dVvIVGaG~aGl~~A~~L~~~G~   35 (379)
T 3alj_A           10 KTRRAEVAGGGFAGLTAAIALKQNGW   35 (379)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC
Confidence            45899999999999999999999986

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.21  E-value=8.5e-07  Score=64.46  Aligned_cols=26  Identities=42%  Similarity=0.682  Sum_probs=24.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+||||||+||++|+.|+++|+
T Consensus         4 ~~~dVlIVGaG~aGl~~A~~La~~G~   29 (535)
T 3ihg_A            4 HEVDVLVVGAGLGGLSTAMFLARQGV   29 (535)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTTTC
T ss_pred             ccCcEEEECcCHHHHHHHHHHHHCCC
Confidence            45899999999999999999999986

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=98.21  E-value=6.2e-07  Score=61.14  Aligned_cols=25  Identities=28%  Similarity=0.567  Sum_probs=23.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ++||+|||||++|+++|+.|+++|+
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~~G~   26 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATRAGL   26 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHHTTC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCC
Confidence            4799999999999999999999986

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.20  E-value=1e-06  Score=57.76  Aligned_cols=25  Identities=24%  Similarity=0.368  Sum_probs=23.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+||+|||+|++||++|..|+++|+
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~g~   26 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRARK   26 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCC
Confidence            3799999999999999999999885

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=98.20  E-value=4.9e-07  Score=63.09  Aligned_cols=24  Identities=29%  Similarity=0.405  Sum_probs=22.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      .+||+|||||++||++|+.|+++|
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~~G   28 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEKEI   28 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHhc
Confidence            479999999999999999999987

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=98.19  E-value=9.3e-07  Score=65.12  Aligned_cols=26  Identities=38%  Similarity=0.680  Sum_probs=24.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+||||||+||++|+.|+++|+
T Consensus        25 ~~~dVlIVGaGpaGl~~A~~La~~G~   50 (549)
T 2r0c_A           25 IETDVLILGGGPVGMALALDLAHRQV   50 (549)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC
Confidence            45899999999999999999999986

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.19  E-value=9.7e-07  Score=58.91  Aligned_cols=26  Identities=23%  Similarity=0.556  Sum_probs=23.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+||+|||+||+|+++|+.|+++|+
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~~g~   29 (320)
T 1trb_A            4 KHSKLLILGSGPAGYTAAVYAARANL   29 (320)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCC
Confidence            46899999999999999999999875

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=98.18  E-value=1e-06  Score=61.46  Aligned_cols=24  Identities=33%  Similarity=0.411  Sum_probs=22.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +||+|||||++||++|+.|+++|+
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~G~   25 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNAGK   25 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTC
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCC
Confidence            699999999999999999999986

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=98.18  E-value=9.5e-07  Score=62.31  Aligned_cols=24  Identities=29%  Similarity=0.441  Sum_probs=22.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +||+|||||++||++|++|+++|.
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~   26 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPC   26 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSS
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCC
Confidence            699999999999999999999985

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.18  E-value=1.1e-06  Score=63.47  Aligned_cols=25  Identities=24%  Similarity=0.422  Sum_probs=23.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ++||+|||+|++|+++|+.|+++|+
T Consensus        26 ~~DVvVIGgG~aGl~aA~~la~~G~   50 (484)
T 3o0h_A           26 DFDLFVIGSGSGGVRAARLAGALGK   50 (484)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCcC
Confidence            5899999999999999999999986

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=98.17  E-value=9.1e-07  Score=60.06  Aligned_cols=26  Identities=23%  Similarity=0.244  Sum_probs=23.2

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +.++||+|||+|++|+++|+.|+ +|+
T Consensus         7 ~~~~dv~IIGaGi~Gls~A~~La-~G~   32 (381)
T 3nyc_A            7 PIEADYLVIGAGIAGASTGYWLS-AHG   32 (381)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHT-TTS
T ss_pred             CCcCCEEEECCcHHHHHHHHHHh-CCC
Confidence            45799999999999999999999 575

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.17  E-value=8.4e-07  Score=63.29  Aligned_cols=25  Identities=32%  Similarity=0.501  Sum_probs=23.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ++||+||||||+|+++|+.|+++|+
T Consensus         6 ~~dVvIVGaG~aGl~aA~~La~~G~   30 (453)
T 3atr_A            6 KYDVLIIGGGFAGSSAAYQLSRRGL   30 (453)
T ss_dssp             ECSEEEECCSHHHHHHHHHHSSSSC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCC
Confidence            5899999999999999999999886

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.16  E-value=1.4e-06  Score=58.51  Aligned_cols=26  Identities=31%  Similarity=0.548  Sum_probs=23.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||+|++|+++|+.|+++|+
T Consensus        15 ~~~dvvIIG~G~aGl~aA~~l~~~g~   40 (319)
T 3cty_A           15 RDFDVVIVGAGAAGFSAAVYAARSGF   40 (319)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCC
Confidence            45899999999999999999999885

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.16  E-value=1.2e-06  Score=58.27  Aligned_cols=26  Identities=31%  Similarity=0.455  Sum_probs=23.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+||+|||+|++||++|+.|+++|+
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~   31 (332)
T 3lzw_A            6 KVYDITIIGGGPVGLFTAFYGGMRQA   31 (332)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCC
Confidence            45899999999999999999999885

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.15  E-value=1.3e-06  Score=58.18  Aligned_cols=25  Identities=44%  Similarity=0.723  Sum_probs=23.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ++||+|||+||+|+++|..|+++|+
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~   25 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARKGI   25 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC
Confidence            3799999999999999999999885

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=98.15  E-value=1.9e-06  Score=60.12  Aligned_cols=25  Identities=36%  Similarity=0.671  Sum_probs=23.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      .++||+|||||++||++|+.|+++|
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~g   29 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQAG   29 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCC
Confidence            4589999999999999999999998

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.15  E-value=2.2e-06  Score=64.80  Aligned_cols=46  Identities=33%  Similarity=0.432  Sum_probs=33.4

Q ss_pred             ccccccCCCCCCCcc-------cccCccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           22 PYGYTPCRALSDSKT-------IVSNEAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        22 ~~~~~~~~~~~~~~~-------~~~~~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +.+|..+|....+..       .......+||+|||+|++||++|+.|+++|+
T Consensus       363 ~~~C~vnp~~g~e~~~~~~~~~~~~~~~~~~VvIIGgG~AGl~aA~~La~~G~  415 (690)
T 3k30_A          363 PIRCTQNPSMGEEWRRGWHPERIRAKESDARVLVVGAGPSGLEAARALGVRGY  415 (690)
T ss_dssp             CCCCSSCTTTTTTTTTCCCSSCCCCCSSCCEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             cccCCcCcccCcccccccCccccCcccccceEEEECCCHHHHHHHHHHHHCCC
Confidence            456767776544322       1122356899999999999999999999885

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=98.15  E-value=1.3e-06  Score=60.07  Aligned_cols=25  Identities=36%  Similarity=0.554  Sum_probs=23.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHH-CC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTK-LG   66 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~-~G   66 (68)
                      .++||+|||+|++|+++|+.|++ +|
T Consensus        20 ~~~dVvIIG~G~~Gl~~A~~La~~~G   45 (405)
T 2gag_B           20 KSYDAIIVGGGGHGLATAYFLAKNHG   45 (405)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHHHC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHhcC
Confidence            46899999999999999999999 87

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=98.14  E-value=1.7e-06  Score=62.44  Aligned_cols=26  Identities=35%  Similarity=0.502  Sum_probs=23.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||||++|+++|+.|+++|+
T Consensus        26 ~~~dViIIGgG~AGl~aA~~La~~G~   51 (417)
T 3v76_A           26 EKQDVVIIGAGAAGMMCAIEAGKRGR   51 (417)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC
Confidence            46899999999999999999999986

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.14  E-value=1.3e-06  Score=63.58  Aligned_cols=26  Identities=27%  Similarity=0.572  Sum_probs=24.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||||++|+++|+.|+++|+
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~G~   31 (512)
T 3e1t_A            6 EVFDLIVIGGGPGGSTLASFVAMRGH   31 (512)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCC
Confidence            45899999999999999999999986

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.14  E-value=1.5e-06  Score=58.96  Aligned_cols=26  Identities=38%  Similarity=0.646  Sum_probs=23.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||+|++|+++|+.|++.|+
T Consensus         3 ~~~~vvIIGaG~aGl~aA~~l~~~g~   28 (369)
T 3d1c_A            3 QHHKVAIIGAGAAGIGMAITLKDFGI   28 (369)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             ccCcEEEECcCHHHHHHHHHHHHcCC
Confidence            45899999999999999999999885

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=98.14  E-value=1.5e-06  Score=60.39  Aligned_cols=24  Identities=33%  Similarity=0.547  Sum_probs=22.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +||+|||+|++||++|+.|+++|.
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~   24 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGH   24 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTC
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCC
Confidence            489999999999999999999985

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.14  E-value=1.7e-06  Score=58.15  Aligned_cols=26  Identities=42%  Similarity=0.672  Sum_probs=23.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+||+|||+|++|+++|+.|+++|+
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~~g~   29 (335)
T 2zbw_A            4 DHTDVLIVGAGPTGLFAGFYVGMRGL   29 (335)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CcCcEEEECCCHHHHHHHHHHHhCCC
Confidence            35899999999999999999999875

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.13  E-value=1.5e-06  Score=58.43  Aligned_cols=26  Identities=23%  Similarity=0.401  Sum_probs=23.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+||+|||+|++|+++|+.|++.|+
T Consensus         7 ~~~~vvIIG~G~aGl~~A~~l~~~g~   32 (333)
T 1vdc_A            7 HNTRLCIVGSGPAAHTAAIYAARAEL   32 (333)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC
Confidence            45899999999999999999999875

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=98.13  E-value=1.8e-06  Score=61.47  Aligned_cols=26  Identities=35%  Similarity=0.630  Sum_probs=24.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+||+|||+|++||++|+.|+++|+
T Consensus        10 ~~~~v~IIGaG~aGl~aA~~L~~~g~   35 (489)
T 2jae_A           10 GSHSVVVLGGGPAGLCSAFELQKAGY   35 (489)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCC
Confidence            46899999999999999999999885

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.12  E-value=1.8e-06  Score=59.03  Aligned_cols=26  Identities=23%  Similarity=0.433  Sum_probs=23.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+||+|||+|++|+++|+.|+++|+
T Consensus        13 ~~~dvvIIG~G~aGl~aA~~l~~~g~   38 (360)
T 3ab1_A           13 DMRDLTIIGGGPTGIFAAFQCGMNNI   38 (360)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCC
Confidence            45899999999999999999999875

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.12  E-value=1.8e-06  Score=58.16  Aligned_cols=26  Identities=31%  Similarity=0.560  Sum_probs=23.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+||+|||+||+|+++|+.|+++|+
T Consensus         7 ~~~dvvIIG~G~aGl~aA~~l~~~g~   32 (325)
T 2q7v_A            7 HDYDVVIIGGGPAGLTAAIYTGRAQL   32 (325)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHcCC
Confidence            45899999999999999999999885

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=98.12  E-value=1.9e-06  Score=61.52  Aligned_cols=26  Identities=38%  Similarity=0.579  Sum_probs=24.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||+|++|+++|+.|+++|.
T Consensus         3 ~~~dViIIGgG~aGl~aA~~la~~G~   28 (401)
T 2gqf_A            3 QYSENIIIGAGAAGLFCAAQLAKLGK   28 (401)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhCCC
Confidence            45899999999999999999999985

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=98.12  E-value=2e-06  Score=62.60  Aligned_cols=27  Identities=26%  Similarity=0.400  Sum_probs=24.8

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +.++||+|||+|++||++|+.|+++|.
T Consensus        39 ~~~~DVvVVGaG~AGl~AA~~aa~~G~   65 (510)
T 4at0_A           39 DYEADVVVAGYGIAGVAASIEAARAGA   65 (510)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCC
Confidence            456999999999999999999999985

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=98.11  E-value=1.6e-06  Score=62.75  Aligned_cols=25  Identities=40%  Similarity=0.525  Sum_probs=23.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ..+||+|||||++||+||+.|+++|
T Consensus         7 ~~~~VvIIGaG~aGL~AA~~L~~~G   31 (516)
T 1rsg_A            7 AKKKVIIIGAGIAGLKAASTLHQNG   31 (516)
T ss_dssp             EEEEEEEECCBHHHHHHHHHHHHTT
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcC
Confidence            4589999999999999999999998

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=98.11  E-value=2.2e-06  Score=61.41  Aligned_cols=26  Identities=31%  Similarity=0.558  Sum_probs=24.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||||++|+++|+.|+++|.
T Consensus        25 ~~~dVvIIGgG~aGl~aA~~la~~G~   50 (447)
T 2i0z_A           25 MHYDVIVIGGGPSGLMAAIGAAEEGA   50 (447)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCC
Confidence            45899999999999999999999885

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=98.11  E-value=1.7e-06  Score=60.74  Aligned_cols=26  Identities=46%  Similarity=0.647  Sum_probs=24.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||+|++||++|+.|+++|+
T Consensus         4 ~~~~v~iiG~G~~Gl~aA~~l~~~g~   29 (453)
T 2yg5_A            4 LQRDVAIVGAGPSGLAAATALRKAGL   29 (453)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCC
Confidence            45899999999999999999999886

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.11  E-value=2.1e-06  Score=61.48  Aligned_cols=26  Identities=38%  Similarity=0.705  Sum_probs=24.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||+|++|+++|+.|++.|+
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G~   27 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLGL   27 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCC
Confidence            46999999999999999999999885

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.10  E-value=1.1e-06  Score=61.93  Aligned_cols=26  Identities=31%  Similarity=0.413  Sum_probs=24.0

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      +.++||+|||+|++|+++|+.|+++|
T Consensus        21 m~~~dVvIIGgGiaGls~A~~La~~G   46 (448)
T 3axb_A           21 MPRFDYVVVGAGVVGLAAAYYLKVWS   46 (448)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHHH
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHhCC
Confidence            45789999999999999999999987

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=98.10  E-value=1.7e-06  Score=61.20  Aligned_cols=25  Identities=24%  Similarity=0.328  Sum_probs=23.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ..+||+|||+|++||++|++|+++|
T Consensus         3 ~~~~v~IiGaG~~Gl~~A~~L~~~g   27 (475)
T 3lov_A            3 SSKRLVIVGGGITGLAAAYYAERAF   27 (475)
T ss_dssp             CSCEEEEECCBHHHHHHHHHHHHHC
T ss_pred             CcccEEEECCCHHHHHHHHHHHHhC
Confidence            3589999999999999999999987

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=98.09  E-value=2.7e-06  Score=61.39  Aligned_cols=25  Identities=32%  Similarity=0.563  Sum_probs=23.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+||+|||||++||+||+.|+++|+
T Consensus         4 ~~~vvIIGaG~aGL~aA~~L~~~G~   28 (520)
T 1s3e_A            4 KCDVVVVGGGISGMAAAKLLHDSGL   28 (520)
T ss_dssp             BCSEEEECCBHHHHHHHHHHHHTTC
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCC
Confidence            5799999999999999999999886

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=98.09  E-value=2.1e-06  Score=58.22  Aligned_cols=26  Identities=35%  Similarity=0.534  Sum_probs=23.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHC-CC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKL-GI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~-G~   67 (68)
                      .++||+|||+|++|+++|+.|+++ |+
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~~G~   64 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKNPNV   64 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTS
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCC
Confidence            457999999999999999999996 75

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=98.08  E-value=2.3e-06  Score=60.45  Aligned_cols=26  Identities=31%  Similarity=0.437  Sum_probs=23.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||+|++||++|+.|+++|+
T Consensus        15 ~~~~v~iiG~G~~Gl~aa~~l~~~g~   40 (478)
T 2ivd_A           15 TGMNVAVVGGGISGLAVAHHLRSRGT   40 (478)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHTTTC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC
Confidence            46899999999999999999999886

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.07  E-value=2.8e-06  Score=60.95  Aligned_cols=27  Identities=30%  Similarity=0.410  Sum_probs=24.7

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +.++||+|||+||+|+++|+.|++.|+
T Consensus        18 ~~~~dVvIIGgG~aGl~aA~~la~~G~   44 (478)
T 3dk9_A           18 VASYDYLVIGGGSGGLASARRAAELGA   44 (478)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCC
Confidence            356999999999999999999999885

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.07  E-value=2.4e-06  Score=63.79  Aligned_cols=25  Identities=44%  Similarity=0.663  Sum_probs=23.1

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      ..++||+||||||+||++|+.|+++
T Consensus        33 ~~~~DVvIVGaG~aGlaaA~~La~~   57 (584)
T 2gmh_A           33 AEEADVVIVGAGPAGLSAATRLKQL   57 (584)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHH
T ss_pred             ccCCCEEEECcCHHHHHHHHHHHhc
Confidence            4569999999999999999999998

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=98.07  E-value=3.3e-06  Score=60.66  Aligned_cols=26  Identities=31%  Similarity=0.373  Sum_probs=24.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||+|++||++|..|+++|+
T Consensus        10 ~~~dvvVIGaG~~GL~aA~~La~~G~   35 (453)
T 2bcg_G           10 TDYDVIVLGTGITECILSGLLSVDGK   35 (453)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHTTC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCC
Confidence            45899999999999999999999986

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=98.07  E-value=2.5e-06  Score=59.66  Aligned_cols=24  Identities=33%  Similarity=0.565  Sum_probs=22.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .||+|||||++||++|+.|+++|+
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~   24 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGH   24 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTC
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCC
Confidence            389999999999999999999985

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=98.07  E-value=3e-06  Score=61.53  Aligned_cols=26  Identities=15%  Similarity=0.309  Sum_probs=23.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +.+||+|||||++|+++|+.|+++|+
T Consensus         2 ~~~DVvIIGgGi~G~~~A~~La~~G~   27 (501)
T 2qcu_A            2 ETKDLIVIGGGINGAGIAADAAGRGL   27 (501)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCC
Confidence            35899999999999999999999986

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.07  E-value=2.5e-06  Score=56.82  Aligned_cols=24  Identities=33%  Similarity=0.703  Sum_probs=22.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +||+|||+||+|+++|+.|+++|+
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~   25 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGV   25 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             ceEEEECccHHHHHHHHHHHHCCC
Confidence            699999999999999999999886

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.06  E-value=3.1e-06  Score=61.97  Aligned_cols=27  Identities=22%  Similarity=0.334  Sum_probs=24.5

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +.++||+|||+||+|+++|..|++.|.
T Consensus        30 ~~~~DVvVIGgGpaGl~aA~~la~~G~   56 (519)
T 3qfa_A           30 SYDYDLIIIGGGSGGLAAAKEAAQYGK   56 (519)
T ss_dssp             SCSEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCC
Confidence            346899999999999999999999885

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.05  E-value=2.4e-06  Score=57.96  Aligned_cols=26  Identities=23%  Similarity=0.608  Sum_probs=23.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+||+|||+|++|+++|+.|++.|+
T Consensus        13 ~~~~vvIIG~G~aGl~aA~~l~~~g~   38 (335)
T 2a87_A           13 PVRDVIVIGSGPAGYTAALYAARAQL   38 (335)
T ss_dssp             CCEEEEEECCHHHHHHHHHHHHHTTC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCC
Confidence            46899999999999999999999875

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=98.04  E-value=1.9e-06  Score=58.79  Aligned_cols=24  Identities=42%  Similarity=0.560  Sum_probs=22.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHH---CCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTK---LGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~---~G~   67 (68)
                      +||+|||||++|+++|+.|++   +|+
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~   28 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPL   28 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCE
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCc
Confidence            589999999999999999999   774

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.04  E-value=3.1e-06  Score=60.26  Aligned_cols=26  Identities=35%  Similarity=0.519  Sum_probs=24.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+||+||||||+||++|..|++.|.
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~G~   30 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAEKA   30 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCC
Confidence            35899999999999999999999986

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.04  E-value=2.6e-06  Score=59.94  Aligned_cols=26  Identities=27%  Similarity=0.597  Sum_probs=23.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHC--CC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKL--GI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~--G~   67 (68)
                      ..+||+|||+|++|+++|+.|+++  |+
T Consensus        35 ~~~dVvIIGaGi~Gls~A~~La~~~pG~   62 (405)
T 3c4n_A           35 EAFDIVVIGAGRMGAACAFYLRQLAPGR   62 (405)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHCTTS
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhcCCCC
Confidence            358999999999999999999998  75

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=98.04  E-value=5.7e-06  Score=62.42  Aligned_cols=26  Identities=23%  Similarity=0.411  Sum_probs=24.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||||++|+++|+.|+++|+
T Consensus       263 ~~~DVvIIGgGiaGlsaA~~La~~G~  288 (689)
T 3pvc_A          263 RCDDIAIIGGGIVSALTALALQRRGA  288 (689)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHTTTC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCC
Confidence            45899999999999999999999986

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=98.03  E-value=1.8e-06  Score=58.97  Aligned_cols=23  Identities=26%  Similarity=0.540  Sum_probs=21.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      .||+|||||++|+++|+.|+++|
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G   23 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERY   23 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHHhc
Confidence            38999999999999999999986

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.03  E-value=4.1e-06  Score=61.74  Aligned_cols=26  Identities=35%  Similarity=0.537  Sum_probs=24.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||+|++||++|+.|+++|.
T Consensus       125 ~~~DVvVVGaG~aGl~aA~~la~~G~  150 (571)
T 1y0p_A          125 DTVDVVVVGSGGAGFSAAISATDSGA  150 (571)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCC
Confidence            36899999999999999999999986

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.03  E-value=3.5e-06  Score=60.63  Aligned_cols=26  Identities=19%  Similarity=0.296  Sum_probs=24.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||+||+|+++|+.|++.|.
T Consensus         8 ~~~DvvVIGgG~aGl~aA~~la~~G~   33 (483)
T 3dgh_A            8 YDYDLIVIGGGSAGLACAKEAVLNGA   33 (483)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC
Confidence            46999999999999999999999885

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=98.03  E-value=4.1e-06  Score=62.89  Aligned_cols=26  Identities=50%  Similarity=0.741  Sum_probs=24.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHH-CCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTK-LGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~-~G~   67 (68)
                      .++||+||||||+||++|+.|++ .|+
T Consensus        31 ~~~dVlIVGaGpaGL~~A~~La~~~G~   57 (639)
T 2dkh_A           31 SQVDVLIVGCGPAGLTLAAQLAAFPDI   57 (639)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHTTCTTS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHhCCC
Confidence            46899999999999999999999 886

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.02  E-value=3.2e-06  Score=60.51  Aligned_cols=25  Identities=24%  Similarity=0.400  Sum_probs=23.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ++||+|||+|++|+++|+.|+++|+
T Consensus         5 ~~DVvVIGaG~aGl~aA~~la~~G~   29 (463)
T 4dna_A            5 DYDLFVIGGGSGGVRSGRLAAALGK   29 (463)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTC
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCC
Confidence            5899999999999999999999886

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.02  E-value=3.9e-06  Score=61.35  Aligned_cols=26  Identities=42%  Similarity=0.675  Sum_probs=24.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+||+|||||++||++|+.|+++|+
T Consensus        91 ~~~dVvIVGgG~aGl~aA~~La~~G~  116 (497)
T 2bry_A           91 TNTKCLVVGAGPCGLRAAVELALLGA  116 (497)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCC
Confidence            46899999999999999999999985

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.01  E-value=3.9e-06  Score=60.57  Aligned_cols=27  Identities=26%  Similarity=0.464  Sum_probs=24.6

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..++||+|||+||+|+++|..|++.|.
T Consensus         4 ~~~~DvvVIG~G~aGl~aA~~la~~G~   30 (488)
T 3dgz_A            4 QQSFDLLVIGGGSGGLACAKEAAQLGK   30 (488)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCC
Confidence            356999999999999999999999885

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=98.01  E-value=3.7e-06  Score=59.90  Aligned_cols=25  Identities=32%  Similarity=0.449  Sum_probs=23.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ++||+|||+|++||++|+.|+++|+
T Consensus        39 ~~~v~iiGaG~aGl~aA~~l~~~g~   63 (495)
T 2vvm_A           39 PWDVIVIGGGYCGLTATRDLTVAGF   63 (495)
T ss_dssp             CEEEEEECCBHHHHHHHHHHHHTTC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCC
Confidence            3799999999999999999999886

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=98.00  E-value=3.2e-06  Score=58.80  Aligned_cols=24  Identities=38%  Similarity=0.688  Sum_probs=22.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHHC--CC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKL--GI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~--G~   67 (68)
                      .||+||||||+||++|+.|+++  |+
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~   26 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLW   26 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTS
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCC
Confidence            3899999999999999999998  75

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.99  E-value=4.1e-06  Score=59.85  Aligned_cols=25  Identities=40%  Similarity=0.696  Sum_probs=23.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ++||+|||+||+|+++|..|++.|+
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~G~   27 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQLGL   27 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC
Confidence            5899999999999999999999885

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=97.99  E-value=4.2e-06  Score=62.98  Aligned_cols=27  Identities=26%  Similarity=0.662  Sum_probs=24.5

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+||+|||+||+|+++|+.|+++|+
T Consensus       105 ~~~~DVVIVGgGpaGL~aA~~La~~G~  131 (549)
T 3nlc_A          105 NLTERPIVIGFGPCGLFAGLVLAQMGF  131 (549)
T ss_dssp             TCCCCCEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCC
Confidence            345899999999999999999999986

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=97.98  E-value=4.1e-06  Score=59.71  Aligned_cols=26  Identities=31%  Similarity=0.477  Sum_probs=23.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+||+|||+|++||++|+.|+++|+
T Consensus        12 ~~~~v~iiG~G~~Gl~aA~~l~~~g~   37 (504)
T 1sez_A           12 SAKRVAVIGAGVSGLAAAYKLKIHGL   37 (504)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHTTSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC
Confidence            35899999999999999999999885

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=97.98  E-value=4.2e-06  Score=62.78  Aligned_cols=26  Identities=27%  Similarity=0.397  Sum_probs=24.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+||+|||||++|+++|+.|+++|+
T Consensus       271 ~~~DVvIIGgGiaGlsaA~~La~~G~  296 (676)
T 3ps9_A          271 SKREAAIIGGGIASALLSLALLRRGW  296 (676)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCC
Confidence            34899999999999999999999985

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=97.98  E-value=5e-06  Score=60.67  Aligned_cols=26  Identities=23%  Similarity=0.461  Sum_probs=23.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHH---CCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTK---LGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~---~G~   67 (68)
                      ..+||+|||||++|+++|+.|++   +|+
T Consensus         4 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~   32 (538)
T 2aqj_A            4 PIKNIVIVGGGTAGWMAASYLVRALQQQA   32 (538)
T ss_dssp             BCCEEEEECCSHHHHHHHHHHHHHCCSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhcCCCC
Confidence            35899999999999999999999   875

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=97.97  E-value=7e-06  Score=62.79  Aligned_cols=25  Identities=24%  Similarity=0.251  Sum_probs=22.8

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      ..++||+|||+|++||++|+.|+++
T Consensus        20 ~~~~DVvVVG~G~AGL~AAl~aa~~   44 (662)
T 3gyx_A           20 EHSVDLLMVGGGMGNCGAAFEAVRW   44 (662)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHH
T ss_pred             eEEcCEEEECCCHHHHHHHHHHHhh
Confidence            3569999999999999999999986

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=97.97  E-value=5.8e-06  Score=59.69  Aligned_cols=26  Identities=50%  Similarity=0.633  Sum_probs=24.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+||+|||||++||++|+.|+++|+
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~~G~   68 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTRAGH   68 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHTSC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCC
Confidence            46899999999999999999999885

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=97.97  E-value=2.7e-06  Score=60.66  Aligned_cols=26  Identities=38%  Similarity=0.492  Sum_probs=23.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+||+|||||++||++|+.|+++|+
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~   57 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGAGH   57 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCC
Confidence            46899999999999999999999885

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=97.97  E-value=4.1e-06  Score=61.77  Aligned_cols=27  Identities=37%  Similarity=0.565  Sum_probs=24.4

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..++||+|||+|++||++|+.|+++|.
T Consensus       119 ~~~~DVvVVG~G~aGl~aA~~la~~G~  145 (566)
T 1qo8_A          119 SETTQVLVVGAGSAGFNASLAAKKAGA  145 (566)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCC
Confidence            356899999999999999999999885

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=97.96  E-value=5e-06  Score=59.70  Aligned_cols=25  Identities=28%  Similarity=0.360  Sum_probs=23.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ++||+|||+|++|+++|..|++.|+
T Consensus         4 ~~DVvVIGgG~aGl~aA~~l~~~G~   28 (466)
T 3l8k_A            4 KYDVVVIGAGGAGYHGAFRLAKAKY   28 (466)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCC
Confidence            5899999999999999999999885

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.96  E-value=5.6e-06  Score=60.70  Aligned_cols=27  Identities=37%  Similarity=0.660  Sum_probs=24.5

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+||+||||||+|+++|+.|+++|+
T Consensus       210 ~~~~dVvIIGgG~AGl~aA~~la~~G~  236 (521)
T 1hyu_A          210 RDAYDVLIVGSGPAGAAAAVYSARKGI  236 (521)
T ss_dssp             SCCEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             cCcccEEEECCcHHHHHHHHHHHhCCC
Confidence            346899999999999999999999885

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=97.96  E-value=4.5e-06  Score=63.29  Aligned_cols=26  Identities=42%  Similarity=0.721  Sum_probs=24.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHH-----CCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTK-----LGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~-----~G~   67 (68)
                      .++||+||||||+||++|+.|++     .|+
T Consensus         7 ~~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi   37 (665)
T 1pn0_A            7 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDL   37 (665)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTC
T ss_pred             CCCcEEEECcCHHHHHHHHHHhccccccCCC
Confidence            35899999999999999999999     886

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=97.96  E-value=5.7e-06  Score=58.24  Aligned_cols=26  Identities=38%  Similarity=0.484  Sum_probs=24.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+||+|||+|++|+++|..|+++|.
T Consensus         8 ~~~~vvIIGaG~aGl~aA~~L~~~g~   33 (415)
T 3lxd_A            8 ERADVVIVGAGHGGAQAAIALRQNGF   33 (415)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCc
Confidence            46899999999999999999999885

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=97.95  E-value=6.5e-06  Score=51.45  Aligned_cols=24  Identities=38%  Similarity=0.826  Sum_probs=22.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +||+|||+|++|+.+|..|++.|.
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~   25 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGL   25 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCC
Confidence            689999999999999999999875

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=97.95  E-value=6.4e-06  Score=58.39  Aligned_cols=26  Identities=23%  Similarity=0.376  Sum_probs=23.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHC-CC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKL-GI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~-G~   67 (68)
                      .++||+|||+|++||++|+.|+++ |+
T Consensus         6 ~~~~v~IiGaG~~Gl~aA~~L~~~~g~   32 (399)
T 1v0j_A            6 ARFDLFVVGSGFFGLTIAERVATQLDK   32 (399)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHHSCC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHhCCC
Confidence            358999999999999999999998 75

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=97.94  E-value=3.5e-06  Score=59.58  Aligned_cols=25  Identities=32%  Similarity=0.488  Sum_probs=22.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ..+||+|||+||+||++|..|+++|
T Consensus        29 ~~~dVvIIGaG~aGl~aA~~L~~~g   53 (463)
T 3s5w_A           29 VVHDLIGVGFGPSNIALAIALQERA   53 (463)
T ss_dssp             CEESEEEECCSHHHHHHHHHHHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhcc
Confidence            4579999999999999999999876

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=97.94  E-value=5.9e-06  Score=61.39  Aligned_cols=26  Identities=23%  Similarity=0.419  Sum_probs=24.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||||++|+++|+.|+++|+
T Consensus        17 ~~~DVvVIGgGi~Gl~~A~~La~~G~   42 (561)
T 3da1_A           17 KQLDLLVIGGGITGAGIALDAQVRGI   42 (561)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHTTTC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCC
Confidence            46999999999999999999999986

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=97.93  E-value=5.6e-06  Score=59.26  Aligned_cols=26  Identities=38%  Similarity=0.691  Sum_probs=23.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||+||+|+++|+.|++.|+
T Consensus         4 ~~~dVvIIGgG~aGl~aA~~l~~~G~   29 (478)
T 1v59_A            4 KSHDVVIIGGGPAGYVAAIKAAQLGF   29 (478)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCC
Confidence            35899999999999999999999885

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=97.91  E-value=4.7e-06  Score=59.97  Aligned_cols=25  Identities=32%  Similarity=0.484  Sum_probs=22.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHH---CCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTK---LGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~---~G~   67 (68)
                      .+||+|||||++|+++|+.|++   +|+
T Consensus         2 ~~dVvIVGgG~aGl~~A~~La~~~~~G~   29 (511)
T 2weu_A            2 IRSVVIVGGGTAGWMTASYLKAAFDDRI   29 (511)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHGGGS
T ss_pred             cceEEEECCCHHHHHHHHHHHhhcCCCC
Confidence            3799999999999999999999   775

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=97.91  E-value=6.9e-06  Score=59.14  Aligned_cols=26  Identities=38%  Similarity=0.657  Sum_probs=23.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHC--CC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKL--GI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~--G~   67 (68)
                      .++||+|||+|++||++|+.|+++  |+
T Consensus        78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~  105 (344)
T 3jsk_A           78 AETDIVIVGAGSCGLSAAYVLSTLRPDL  105 (344)
T ss_dssp             HBCSEEEECCSHHHHHHHHHHHHHCTTS
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCC
Confidence            458999999999999999999986  64

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=97.91  E-value=7.5e-06  Score=58.56  Aligned_cols=25  Identities=40%  Similarity=0.703  Sum_probs=23.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ++||+|||+|++|+++|+.|++.|+
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~   26 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGM   26 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCC
Confidence            4799999999999999999999886

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=97.90  E-value=6.2e-06  Score=60.10  Aligned_cols=22  Identities=32%  Similarity=0.641  Sum_probs=21.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHH
Q 035312           43 VVPVLIVGAGPVGLVLSILLTK   64 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~   64 (68)
                      .+||+|||||++|+++|..|++
T Consensus         7 ~~dVvIVGgG~aGl~aA~~La~   28 (526)
T 2pyx_A            7 ITEIIIVGGGTAGWITAGLLAA   28 (526)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHh
Confidence            5799999999999999999999

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=97.90  E-value=8.5e-06  Score=58.28  Aligned_cols=26  Identities=19%  Similarity=0.400  Sum_probs=23.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||+|++|+++|+.|++.|+
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~   28 (467)
T 1zk7_A            3 PPVQVAVIGSGGAAMAAALKAVEQGA   28 (467)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCC
Confidence            35899999999999999999999875

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.90  E-value=8e-06  Score=56.95  Aligned_cols=25  Identities=32%  Similarity=0.457  Sum_probs=23.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ++||+|||+|++|+++|..|++.|.
T Consensus         4 ~~dvvIIG~G~aGl~aA~~l~~~g~   28 (384)
T 2v3a_A            4 RAPLVIIGTGLAGYNLAREWRKLDG   28 (384)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTCS
T ss_pred             CCcEEEECChHHHHHHHHHHHhhCC
Confidence            5899999999999999999999873

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.90  E-value=9.8e-06  Score=57.76  Aligned_cols=26  Identities=42%  Similarity=0.622  Sum_probs=23.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||+|++|+++|..|++.|.
T Consensus         2 ~~~dvvIIGgG~aGl~aA~~l~~~g~   27 (455)
T 1ebd_A            2 IETETLVVGAGPGGYVAAIRAAQLGQ   27 (455)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCC
Confidence            35899999999999999999999885

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.90  E-value=8.7e-06  Score=58.03  Aligned_cols=26  Identities=38%  Similarity=0.635  Sum_probs=23.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||+|++|+++|..|++.|+
T Consensus         5 ~~~dvvIIGaG~aGl~aA~~l~~~g~   30 (470)
T 1dxl_A            5 DENDVVIIGGGPGGYVAAIKAAQLGF   30 (470)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCC
Confidence            46899999999999999999999875

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.89  E-value=8.6e-06  Score=59.31  Aligned_cols=26  Identities=35%  Similarity=0.494  Sum_probs=24.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+||+|||+||+||++|+.|+++|+
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~G~  146 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAKGY  146 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC
Confidence            46899999999999999999999886

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=97.89  E-value=7.2e-06  Score=61.42  Aligned_cols=26  Identities=19%  Similarity=0.463  Sum_probs=24.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||+|++||++|+.|+++|.
T Consensus         6 ~~~DVvVVGaG~AGl~AA~~la~~G~   31 (588)
T 2wdq_A            6 REFDAVVIGAGGAGMRAALQISQSGQ   31 (588)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCC
Confidence            46899999999999999999999885

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=97.89  E-value=8.6e-06  Score=59.89  Aligned_cols=26  Identities=31%  Similarity=0.424  Sum_probs=23.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHH---CCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTK---LGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~---~G~   67 (68)
                      ..+||+|||||++|+++|+.|++   .|+
T Consensus        24 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~   52 (550)
T 2e4g_A           24 KIDKILIVGGGTAGWMAASYLGKALQGTA   52 (550)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTTTSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCC
Confidence            35899999999999999999999   775

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=97.89  E-value=1.2e-05  Score=60.75  Aligned_cols=27  Identities=26%  Similarity=0.304  Sum_probs=23.8

Q ss_pred             ccccCEEEECCCHHHHHHHHHHH---H-CCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLT---K-LGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~---~-~G~   67 (68)
                      ..++||+|||+|++||++|+.|+   + +|.
T Consensus        20 ~~~~DVvVIG~G~AGl~AAl~aa~~~~~~G~   50 (643)
T 1jnr_A           20 VVETDILIIGGGFSGCGAAYEAAYWAKLGGL   50 (643)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHHTTTTC
T ss_pred             eccCCEEEECcCHHHHHHHHHHhhhhhhCCC
Confidence            35689999999999999999999   5 674

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.88  E-value=8.8e-06  Score=60.05  Aligned_cols=27  Identities=22%  Similarity=0.363  Sum_probs=24.4

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+||+|||+||+|+++|..|++.|+
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~  131 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAKYGA  131 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             cccccEEEECCCccHHHHHHHHHhCCC
Confidence            346899999999999999999999885

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=97.88  E-value=9.1e-06  Score=58.20  Aligned_cols=27  Identities=33%  Similarity=0.573  Sum_probs=24.4

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +.++||+|||+|++|+++|..|++.|+
T Consensus         4 ~~~~dvvIIGgG~aGl~aA~~l~~~g~   30 (474)
T 1zmd_A            4 PIDADVTVIGSGPGGYVAAIKAAQLGF   30 (474)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCC
Confidence            346899999999999999999999885

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.88  E-value=1.3e-05  Score=61.15  Aligned_cols=27  Identities=41%  Similarity=0.544  Sum_probs=24.4

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+||+|||+||+||++|+.|+++|+
T Consensus       387 ~~~~~VvIIGgGpAGl~aA~~L~~~G~  413 (729)
T 1o94_A          387 KNKDSVLIVGAGPSGSEAARVLMESGY  413 (729)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             cCCceEEEECCCHHHHHHHHHHHHCCC
Confidence            345899999999999999999999885

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=97.87  E-value=9e-06  Score=59.67  Aligned_cols=26  Identities=46%  Similarity=0.539  Sum_probs=24.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||||++|+++|+.|+++|+
T Consensus        15 ~~~dVvIIGaG~aGl~aA~~L~~~G~   40 (542)
T 1w4x_A           15 EEVDVLVVGAGFSGLYALYRLRELGR   40 (542)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCC
Confidence            46899999999999999999999886

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=97.87  E-value=1e-05  Score=58.68  Aligned_cols=27  Identities=41%  Similarity=0.415  Sum_probs=24.5

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+||+|||||++||++|+.|+++|+
T Consensus        27 ~~~~dv~IIGaG~aGl~aA~~l~~~g~   53 (397)
T 3hdq_A           27 SKGFDYLIVGAGFAGSVLAERLASSGQ   53 (397)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCCCEEEECccHHHHHHHHHHHHCCC
Confidence            356899999999999999999999885

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=97.87  E-value=7.9e-06  Score=59.33  Aligned_cols=25  Identities=28%  Similarity=0.248  Sum_probs=23.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ++||+|||+||+|+++|..|++.|.
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~~G~   32 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKKHTD   32 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTCS
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCC
Confidence            4899999999999999999999885

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=97.87  E-value=7.2e-06  Score=59.99  Aligned_cols=26  Identities=31%  Similarity=0.492  Sum_probs=22.7

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      +.-+||+|||+||+||++|..|++.|
T Consensus        37 ~~i~Dvi~IGaGp~gLa~A~~L~~~~   62 (501)
T 4b63_A           37 DELHDLLCVGFGPASLAIAIALHDAL   62 (501)
T ss_dssp             TSCEEEEEECCSHHHHHHHHHHHHHH
T ss_pred             CCcCcEEEEcccHHHHHHHHHHHhcC
Confidence            34589999999999999999998764

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.87  E-value=9.1e-06  Score=58.60  Aligned_cols=26  Identities=19%  Similarity=0.308  Sum_probs=24.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||||++|+++|..|++.|.
T Consensus        10 ~~~dVvVIGgG~aGl~aA~~l~~~g~   35 (479)
T 2hqm_A           10 KHYDYLVIGGGSGGVASARRAASYGA   35 (479)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTSC
T ss_pred             ccCCEEEEcCCHHHHHHHHHHHHCCC
Confidence            46899999999999999999999885

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=97.87  E-value=1.1e-05  Score=56.66  Aligned_cols=24  Identities=33%  Similarity=0.509  Sum_probs=22.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +||+|||+|++|+++|..|+++|.
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~   25 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKY   25 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCc
Confidence            689999999999999999999886

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=97.87  E-value=7.8e-06  Score=61.47  Aligned_cols=25  Identities=32%  Similarity=0.389  Sum_probs=23.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      .++||+|||+|++||++|+.|+++|
T Consensus         4 ~~~DVvIVG~G~AGl~aAl~la~~G   28 (602)
T 1kf6_A            4 FQADLAIVGAGGAGLRAAIAAAQAN   28 (602)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhcC
Confidence            4589999999999999999999987

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.86  E-value=1.8e-05  Score=59.55  Aligned_cols=46  Identities=20%  Similarity=0.247  Sum_probs=31.5

Q ss_pred             ccccccCCCCCCCccc--ccCccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           22 PYGYTPCRALSDSKTI--VSNEAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        22 ~~~~~~~~~~~~~~~~--~~~~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +..|..+|....+...  ......+||+|||+|++|+.+|..|+++|+
T Consensus       350 ~~~C~~np~~~~e~~~~~~~~~~~~~vvIIGgG~AGl~aA~~l~~~g~  397 (671)
T 1ps9_A          350 VTSCLVNPRACHETKMPILPAVQKKNLAVVGAGPAGLAFAINAAARGH  397 (671)
T ss_dssp             CCCCSSCTTTTCTTTSCCCSCSSCCEEEEECCSHHHHHHHHHHHTTTC
T ss_pred             ceEEEeCcccccccccCCCCCCCCCeEEEECCCHHHHHHHHHHHhCCC
Confidence            3445556554332211  112346899999999999999999999875

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.86  E-value=1.1e-05  Score=57.86  Aligned_cols=26  Identities=42%  Similarity=0.695  Sum_probs=23.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||+|++|+++|..|++.|.
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~   29 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQLGI   29 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCC
Confidence            46899999999999999999999875

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=97.86  E-value=1.1e-05  Score=62.03  Aligned_cols=26  Identities=35%  Similarity=0.451  Sum_probs=23.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||||++|+++|+.|+++|.
T Consensus         3 ~~~dVvIIGgGi~Gls~A~~La~~G~   28 (830)
T 1pj5_A            3 STPRIVIIGAGIVGTNLADELVTRGW   28 (830)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCC
Confidence            35899999999999999999999985

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=97.86  E-value=1.5e-05  Score=58.33  Aligned_cols=27  Identities=22%  Similarity=0.324  Sum_probs=24.4

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..++||+|||+|++|+++|+.|++.|.
T Consensus        41 ~~~~dVvIIGgG~aGl~aA~~l~~~G~   67 (523)
T 1mo9_A           41 PREYDAIFIGGGAAGRFGSAYLRAMGG   67 (523)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCC
Confidence            346899999999999999999999885

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=97.86  E-value=7.9e-06  Score=62.05  Aligned_cols=27  Identities=30%  Similarity=0.496  Sum_probs=24.5

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +.++||+|||+|++||++|+.|+++|.
T Consensus        16 ~~~~DVvVVG~G~AGl~AAl~aa~~G~   42 (621)
T 2h88_A           16 DHEFDAVVVGAGGAGLRAAFGLSEAGF   42 (621)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             cccCCEEEECccHHHHHHHHHHHHCCC
Confidence            356899999999999999999999885

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.86  E-value=8.8e-06  Score=59.06  Aligned_cols=26  Identities=19%  Similarity=0.229  Sum_probs=23.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHH-CCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTK-LGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~-~G~   67 (68)
                      .++||+|||||++|+++|+.|++ .|+
T Consensus         2 ~~~dvvVIGgG~aGl~aA~~la~~~G~   28 (490)
T 1fec_A            2 RAYDLVVIGAGSGGLEAGWNAASLHKK   28 (490)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCC
T ss_pred             ccccEEEECCCHHHHHHHHHHHHHcCC
Confidence            35899999999999999999999 775

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=97.85  E-value=1e-05  Score=57.67  Aligned_cols=24  Identities=42%  Similarity=0.775  Sum_probs=22.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +||+|||+||+|+++|..|++.|+
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~   25 (455)
T 2yqu_A            2 YDLLVIGAGPGGYVAAIRAAQLGM   25 (455)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCEEEECCChhHHHHHHHHHHCCC
Confidence            799999999999999999999885

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.85  E-value=1.3e-05  Score=58.17  Aligned_cols=25  Identities=16%  Similarity=0.372  Sum_probs=23.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ++||+|||||++|+++|..|++.|.
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~g~   26 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARHNA   26 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTC
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Confidence            4899999999999999999999875

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=97.84  E-value=1.1e-05  Score=62.37  Aligned_cols=26  Identities=23%  Similarity=0.482  Sum_probs=24.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||||++|+.+|+.|++.|.
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~G~   52 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARMGQ   52 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CcCCEEEECChHHHHHHHHHHHhCCC
Confidence            46899999999999999999999986

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=97.83  E-value=1.3e-05  Score=57.71  Aligned_cols=25  Identities=20%  Similarity=0.393  Sum_probs=23.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ++||+|||+|++|+++|..|++.|+
T Consensus         4 ~~dVvIIGgG~aGl~aA~~l~~~g~   28 (463)
T 2r9z_A            4 HFDLIAIGGGSGGLAVAEKAAAFGK   28 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCC
Confidence            5899999999999999999999875

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=97.83  E-value=1.5e-05  Score=59.35  Aligned_cols=26  Identities=27%  Similarity=0.478  Sum_probs=24.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+||+|||||++|+++|+.|+++|+
T Consensus        31 ~~~DVvVIGgGi~G~~~A~~La~rG~   56 (571)
T 2rgh_A           31 EELDLLIIGGGITGAGVAVQAAASGI   56 (571)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC
Confidence            45899999999999999999999986

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=97.83  E-value=1.3e-05  Score=61.78  Aligned_cols=26  Identities=19%  Similarity=0.526  Sum_probs=24.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||||++|+.||+.|++.|.
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr~G~   51 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAARMGA   51 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCC
Confidence            45899999999999999999999985

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=97.82  E-value=1.2e-05  Score=57.65  Aligned_cols=26  Identities=15%  Similarity=0.180  Sum_probs=23.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||||++|+++|..|++.|.
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~   28 (450)
T 1ges_A            3 KHYDYIAIGGGSGGIASINRAAMYGQ   28 (450)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCC
Confidence            35899999999999999999999875

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=97.82  E-value=1.1e-05  Score=58.03  Aligned_cols=26  Identities=27%  Similarity=0.496  Sum_probs=23.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||+|++|+++|+.|++.|+
T Consensus         5 ~~~dVvIIGaG~aGl~aA~~l~~~G~   30 (482)
T 1ojt_A            5 AEYDVVVLGGGPGGYSAAFAAADEGL   30 (482)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCC
Confidence            35899999999999999999999885

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=97.82  E-value=1.5e-05  Score=57.97  Aligned_cols=25  Identities=44%  Similarity=0.773  Sum_probs=23.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ..+||+|||+|++||++|+.|+++|
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~~g   32 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTELG   32 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHHTT
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcC
Confidence            4589999999999999999999987

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=97.81  E-value=1.3e-05  Score=61.27  Aligned_cols=26  Identities=23%  Similarity=0.470  Sum_probs=23.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||+|++||++|+.|+++|.
T Consensus         4 ~~~DVvVIGgG~AGL~AAl~aae~G~   29 (660)
T 2bs2_A            4 QYCDSLVIGGGLAGLRAAVATQQKGL   29 (660)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHTTTC
T ss_pred             ccccEEEECchHHHHHHHHHHHHCCC
Confidence            46899999999999999999999885

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=97.80  E-value=1.2e-05  Score=61.90  Aligned_cols=27  Identities=26%  Similarity=0.511  Sum_probs=24.3

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..++||+|||||++|+.+|+.|++.|.
T Consensus        19 ~~~yDVIVIGgG~AGl~AAlaLAr~G~   45 (641)
T 3cp8_A           19 SHMYDVIVVGAGHAGCEAALAVARGGL   45 (641)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             cCcCCEEEECccHHHHHHHHHHHHCCC
Confidence            346999999999999999999999986

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=97.79  E-value=1.2e-05  Score=59.57  Aligned_cols=25  Identities=36%  Similarity=0.586  Sum_probs=22.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||+|++||++|+.|++ |.
T Consensus         7 ~~~DVvVVG~G~AGl~aAl~la~-G~   31 (540)
T 1chu_A            7 HSCDVLIIGSGAAGLSLALRLAD-QH   31 (540)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTT-TS
T ss_pred             CCCCEEEECccHHHHHHHHHHhc-CC
Confidence            46899999999999999999998 74

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=97.79  E-value=1.4e-05  Score=57.02  Aligned_cols=26  Identities=42%  Similarity=0.639  Sum_probs=23.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHC--CC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKL--GI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~--G~   67 (68)
                      .++||+|||+|++|+++|+.|+++  |+
T Consensus        64 ~~~dv~IiG~G~aGl~aA~~la~~~~g~   91 (326)
T 2gjc_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDL   91 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTS
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCC
Confidence            346999999999999999999987  64

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.79  E-value=1.5e-05  Score=56.39  Aligned_cols=26  Identities=27%  Similarity=0.474  Sum_probs=23.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||+|++|+++|..|++.|.
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~   31 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQAGY   31 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCC
Confidence            45899999999999999999999875

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=97.79  E-value=1.7e-05  Score=57.59  Aligned_cols=23  Identities=30%  Similarity=0.582  Sum_probs=21.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ||+|||+|++|+++|+.|+++|.
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~   23 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGK   23 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Confidence            89999999999999999999885

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=97.79  E-value=1.2e-05  Score=56.51  Aligned_cols=24  Identities=38%  Similarity=0.443  Sum_probs=22.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +||+|||+|++||++|+.|+++|+
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~g~   25 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKLNK   25 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCC
Confidence            689999999999999999999875

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=97.79  E-value=1.6e-05  Score=57.38  Aligned_cols=24  Identities=29%  Similarity=0.515  Sum_probs=22.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHH---CCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTK---LGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~---~G~   67 (68)
                      +||+|||||++||++|..|++   .|+
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~   29 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGA   29 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTC
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCC
Confidence            699999999999999999999   875

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.78  E-value=1.6e-05  Score=57.15  Aligned_cols=25  Identities=28%  Similarity=0.636  Sum_probs=23.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ++||+|||+|++|+++|..|++.|.
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g~   30 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLGL   30 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCC
Confidence            5899999999999999999999875

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=97.78  E-value=1.8e-05  Score=55.95  Aligned_cols=24  Identities=29%  Similarity=0.411  Sum_probs=22.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +||+|||+|++|+++|..|+++|.
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~   26 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGF   26 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCEEEEcccHHHHHHHHHHHccCc
Confidence            589999999999999999999885

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.77  E-value=1.9e-05  Score=56.31  Aligned_cols=25  Identities=32%  Similarity=0.405  Sum_probs=23.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+||+|||+|++|+++|..|+++|.
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~g~   28 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRASGW   28 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCcEEEEcCHHHHHHHHHHHHccCc
Confidence            5899999999999999999999885

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.76  E-value=1.5e-05  Score=58.06  Aligned_cols=25  Identities=24%  Similarity=0.389  Sum_probs=23.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHH-CCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTK-LGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~-~G~   67 (68)
                      ++||+|||+|++|+++|+.|++ .|+
T Consensus         7 ~~dvvVIGgG~aGl~aA~~la~~~G~   32 (495)
T 2wpf_A            7 AFDLVVIGAGSGGLEAGWNAATLYGK   32 (495)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHCC
T ss_pred             ccCEEEECCChhHHHHHHHHHHhcCC
Confidence            5899999999999999999999 775

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=97.76  E-value=1.8e-05  Score=56.01  Aligned_cols=25  Identities=40%  Similarity=0.509  Sum_probs=23.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +.||+|||+|++|+++|+.|+++|+
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~g~   27 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEKGH   27 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCC
Confidence            4799999999999999999999875

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=97.73  E-value=2.2e-05  Score=58.35  Aligned_cols=26  Identities=23%  Similarity=0.627  Sum_probs=23.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||||++|+.+|+.|++.|+
T Consensus         8 ~~~dVvIIGaG~aGl~aA~~L~~~g~   33 (545)
T 3uox_A            8 PALDAVVIGAGVTGIYQAFLINQAGM   33 (545)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCC
Confidence            45899999999999999999999885

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=97.72  E-value=1.5e-05  Score=57.09  Aligned_cols=23  Identities=22%  Similarity=0.381  Sum_probs=21.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      .+||+|||+|++||++|..|+++
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~   25 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRL   25 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHH
T ss_pred             CCcEEEECCCHHHHHHHHHHHhh
Confidence            47999999999999999999987

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=97.71  E-value=1.9e-05  Score=58.53  Aligned_cols=26  Identities=31%  Similarity=0.496  Sum_probs=23.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHH-HCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLT-KLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~-~~G~   67 (68)
                      .++||+|||||++|+++|+.|+ +.|+
T Consensus         7 ~~~dVvIIGaG~aGl~aA~~L~~~~G~   33 (540)
T 3gwf_A            7 HTVDAVVIGAGFGGIYAVHKLHHELGL   33 (540)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCC
Confidence            4589999999999999999999 8775

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=97.71  E-value=2.1e-05  Score=55.98  Aligned_cols=23  Identities=26%  Similarity=0.563  Sum_probs=21.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      .+||+|||+|++|+++|+.|++.
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~   25 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRL   25 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH
T ss_pred             cCcEEEECCcHHHHHHHHHHHHh
Confidence            47999999999999999999987

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=97.71  E-value=2.7e-05  Score=55.49  Aligned_cols=26  Identities=35%  Similarity=0.502  Sum_probs=22.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+||+|||+|++||++|+.|+++|+
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~~g~   28 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSEAGI   28 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHHTTC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCC
Confidence            45899999999999999999999885

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=97.70  E-value=2.2e-05  Score=58.33  Aligned_cols=27  Identities=30%  Similarity=0.425  Sum_probs=24.0

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..++||+|||||++|+.+|+.|++.|+
T Consensus        19 ~~~~dVvIIGaG~aGl~aA~~L~~~G~   45 (549)
T 4ap3_A           19 TTSYDVVVVGAGIAGLYAIHRFRSQGL   45 (549)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCCCEEEECchHHHHHHHHHHHhCCC
Confidence            346899999999999999999999885

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=97.70  E-value=3.6e-05  Score=55.04  Aligned_cols=26  Identities=23%  Similarity=0.364  Sum_probs=24.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||+|++|+++|..|+++|+
T Consensus         5 ~~~~v~iiG~G~~gl~~a~~l~~~g~   30 (433)
T 1d5t_A            5 EEYDVIVLGTGLTECILSGIMSVNGK   30 (433)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCC
Confidence            45899999999999999999999885

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.70  E-value=1.5e-05  Score=57.56  Aligned_cols=23  Identities=26%  Similarity=0.598  Sum_probs=21.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      ++||+|||+|++|+++|+.|++.
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~   24 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATS   24 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhC
Confidence            47999999999999999999987

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=97.69  E-value=2.4e-05  Score=59.15  Aligned_cols=26  Identities=35%  Similarity=0.538  Sum_probs=23.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+||+|||+|++|+++|+.|+++|+
T Consensus        45 ~~~dvvIIG~G~aGl~aA~~l~~~G~   70 (623)
T 3pl8_A           45 IKYDVVIVGSGPIGCTYARELVGAGY   70 (623)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             ccCCEEEECCcHHHHHHHHHHHhCCC
Confidence            35899999999999999999999885

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.63  E-value=4e-05  Score=60.64  Aligned_cols=26  Identities=27%  Similarity=0.581  Sum_probs=24.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+||+|||+||+||++|..|+++|+
T Consensus       186 ~~~~VvVIGgGpAGl~aA~~L~~~G~  211 (1025)
T 1gte_A          186 YSAKIALLGAGPASISCASFLARLGY  211 (1025)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCC
Confidence            46899999999999999999999986

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=97.62  E-value=4.2e-05  Score=56.75  Aligned_cols=26  Identities=27%  Similarity=0.510  Sum_probs=23.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+||+|||+|++||++|+.|+++|.
T Consensus       125 ~~~~v~viG~G~aG~~aa~~~~~~g~  150 (572)
T 1d4d_A          125 ETTDVVIIGSGGAGLAAAVSARDAGA  150 (572)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHSSSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCC
Confidence            46899999999999999999999885

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=97.62  E-value=3.3e-05  Score=56.74  Aligned_cols=25  Identities=20%  Similarity=0.263  Sum_probs=22.8

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      +...||+|||||++||++|..|+++
T Consensus        34 ~~~~~VvIIGgG~AGl~aA~~L~~~   58 (588)
T 3ics_A           34 WGSRKIVVVGGVAGGASVAARLRRL   58 (588)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHH
T ss_pred             ccCCCEEEECCcHHHHHHHHHHHhh
Confidence            4568999999999999999999987

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=97.61  E-value=4e-05  Score=56.06  Aligned_cols=27  Identities=33%  Similarity=0.524  Sum_probs=24.1

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..++|++|||+|++|+.+|..|+++|+
T Consensus         5 ~~~~D~iIvG~G~aG~~~A~~L~~~g~   31 (546)
T 1kdg_A            5 ATPYDYIIVGAGPGGIIAADRLSEAGK   31 (546)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCceeEEEECcCHHHHHHHHHHHhCCC
Confidence            356999999999999999999999875

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=97.57  E-value=4.1e-05  Score=53.14  Aligned_cols=24  Identities=21%  Similarity=0.268  Sum_probs=21.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      .++|+|||+|++|+++|..|++.+
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~   25 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLAD   25 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHC
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcC
Confidence            368999999999999999998865

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.57  E-value=3.5e-05  Score=55.71  Aligned_cols=25  Identities=16%  Similarity=0.064  Sum_probs=22.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      .++||+|||+|++|+++|..|++.|
T Consensus        34 m~~dvvIIGaG~aGl~aA~~l~~~g   58 (490)
T 2bc0_A           34 WGSKIVVVGANHAGTACIKTMLTNY   58 (490)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHH
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhcC
Confidence            4589999999999999999999875

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=97.56  E-value=4.2e-05  Score=54.57  Aligned_cols=22  Identities=27%  Similarity=0.437  Sum_probs=20.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHHC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      .||+|||+|++|+++|..|+++
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~   24 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKK   24 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhh
Confidence            6899999999999999999987

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.55  E-value=4.4e-05  Score=57.11  Aligned_cols=25  Identities=20%  Similarity=0.357  Sum_probs=23.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +||++|||+||+|+.+|..+++.|.
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~~G~   66 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAAHGA   66 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCC
Confidence            4899999999999999999999885

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=97.55  E-value=4.8e-05  Score=53.19  Aligned_cols=21  Identities=24%  Similarity=0.317  Sum_probs=19.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHH
Q 035312           44 VPVLIVGAGPVGLVLSILLTK   64 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~   64 (68)
                      .||+|||||++|+++|..|++
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~   22 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKR   22 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHh
Confidence            479999999999999999998

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=97.53  E-value=6e-05  Score=56.87  Aligned_cols=27  Identities=30%  Similarity=0.538  Sum_probs=24.5

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+||+|||+|++||++|+.|+++|+
T Consensus       105 ~~~~~v~viG~G~~gl~~a~~l~~~g~  131 (662)
T 2z3y_A          105 KKTGKVIIIGSGVSGLAAARQLQSFGM  131 (662)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTC
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHCCC
Confidence            346899999999999999999999986

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.53  E-value=5.2e-05  Score=53.96  Aligned_cols=22  Identities=18%  Similarity=0.182  Sum_probs=20.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHHC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      +||+|||+|++|+++|..|++.
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~   22 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIAD   22 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhh
Confidence            4899999999999999999987

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.52  E-value=4.3e-05  Score=53.59  Aligned_cols=24  Identities=38%  Similarity=0.483  Sum_probs=21.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ..||+|||+|++|+++|..|++.|
T Consensus         8 ~~~vvIIGgG~AGl~aA~~l~~~g   31 (367)
T 1xhc_A            8 GSKVVIVGNGPGGFELAKQLSQTY   31 (367)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTTTS
T ss_pred             CCcEEEECCcHHHHHHHHHHhhcC
Confidence            479999999999999999998765

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.50  E-value=5.4e-05  Score=54.94  Aligned_cols=22  Identities=23%  Similarity=0.294  Sum_probs=20.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHHC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      .||+|||||++||++|..|+++
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~   23 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRL   23 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHhh
Confidence            5899999999999999999987

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=97.49  E-value=6.2e-05  Score=58.59  Aligned_cols=26  Identities=42%  Similarity=0.718  Sum_probs=23.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+||+|||+|++||++|+.|+++|+
T Consensus       335 ~~~~v~viG~G~~Gl~aA~~l~~~g~  360 (776)
T 4gut_A          335 HNKSVIIIGAGPAGLAAARQLHNFGI  360 (776)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC
Confidence            46899999999999999999999885

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=97.49  E-value=7.5e-05  Score=55.49  Aligned_cols=27  Identities=33%  Similarity=0.424  Sum_probs=24.8

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +..+||+|||+|++|+++|+.|+++|.
T Consensus        18 ~~~~dv~iiG~G~~g~~~a~~l~~~g~   44 (475)
T 3p1w_A           18 GEHYDVIILGTGLKECILSGLLSHYGK   44 (475)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHCCC
Confidence            356999999999999999999999986

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.47  E-value=5.1e-05  Score=55.04  Aligned_cols=24  Identities=29%  Similarity=0.389  Sum_probs=21.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHH-C
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTK-L   65 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~-~   65 (68)
                      ..+||+|||+||+|+.+|..|++ .
T Consensus         2 ~~~~VvIIG~G~aGl~aA~~L~~~~   26 (456)
T 1lqt_A            2 RPYYIAIVGSGPSAFFAAASLLKAA   26 (456)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhC
Confidence            35799999999999999999988 5

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.47  E-value=6.9e-05  Score=59.04  Aligned_cols=26  Identities=38%  Similarity=0.599  Sum_probs=23.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||+||+|+++|..|++.|+
T Consensus       127 ~~~dVvVIGaGpAGl~AA~~la~~G~  152 (965)
T 2gag_A          127 VHTDVLVVGAGPAGLAAAREASRSGA  152 (965)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHhCCC
Confidence            45899999999999999999999885

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.45  E-value=7.2e-05  Score=53.90  Aligned_cols=23  Identities=13%  Similarity=0.390  Sum_probs=20.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      ..||+|||+|++|+++|..|++.
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~   58 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRN   58 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHhh
Confidence            36999999999999999999985

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=97.43  E-value=0.00012  Score=55.00  Aligned_cols=24  Identities=38%  Similarity=0.501  Sum_probs=22.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +||+|||+|++|+.+|+.|+++|+
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~   25 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGV   25 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCEEEECchHHHHHHHHHHHHCCC
Confidence            699999999999999999999986

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.43  E-value=3.7e-05  Score=55.90  Aligned_cols=24  Identities=38%  Similarity=0.672  Sum_probs=21.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      .++||+|||+|++|+++|+.|+++
T Consensus       107 ~~~dVvIIGgG~aGl~aA~~L~~~  130 (493)
T 1y56_A          107 VVVDVAIIGGGPAGIGAALELQQY  130 (493)
T ss_dssp             EEESCCEECCSHHHHHHHHHHTTT
T ss_pred             ccCCEEEECccHHHHHHHHHHHhc
Confidence            457999999999999999999875

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.42  E-value=8.6e-05  Score=53.97  Aligned_cols=25  Identities=20%  Similarity=0.421  Sum_probs=22.2

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      +.++||+|||+|++|+++|..|+++
T Consensus         9 ~~~~~vvIIGgG~AGl~aA~~L~~~   33 (493)
T 1m6i_A            9 PSHVPFLLIGGGTAAFAAARSIRAR   33 (493)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHH
T ss_pred             CCcCCEEEECChHHHHHHHHHHHhc
Confidence            3468999999999999999998876

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.42  E-value=8.7e-05  Score=52.74  Aligned_cols=22  Identities=23%  Similarity=0.309  Sum_probs=20.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHHC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      .||+|||+|++|+++|..|++.
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~   22 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNL   22 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHh
Confidence            3899999999999999999986

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=97.41  E-value=0.00011  Score=57.97  Aligned_cols=26  Identities=31%  Similarity=0.543  Sum_probs=24.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+||+|||+|++||++|+.|+++|+
T Consensus       277 ~~~~v~viG~G~aGl~~A~~l~~~g~  302 (852)
T 2xag_A          277 KTGKVIIIGSGVSGLAAARQLQSFGM  302 (852)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC
Confidence            45899999999999999999999986

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.40  E-value=8.7e-05  Score=53.88  Aligned_cols=25  Identities=28%  Similarity=0.454  Sum_probs=22.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ..+||+|||+||+|+.+|..|++.|
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g   29 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHH   29 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHC
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcC
Confidence            3579999999999999999999876

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=97.40  E-value=9.1e-05  Score=52.69  Aligned_cols=23  Identities=26%  Similarity=0.405  Sum_probs=21.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ++|+|||+|++|+++|..|++.+
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~   25 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLM   25 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHC
T ss_pred             CcEEEECCCHHHHHHHHHHhccC
Confidence            57999999999999999998865

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=97.35  E-value=9.2e-05  Score=53.06  Aligned_cols=23  Identities=22%  Similarity=0.326  Sum_probs=21.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +|+|||+||+|+++|..|++.|.
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~   24 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDK   24 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC
Confidence            69999999999999999998773

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=97.35  E-value=8.8e-05  Score=52.67  Aligned_cols=21  Identities=29%  Similarity=0.485  Sum_probs=20.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHH
Q 035312           44 VPVLIVGAGPVGLVLSILLTK   64 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~   64 (68)
                      +||+|||||++|+++|..|++
T Consensus         5 ~~vvIIGgG~aGl~aA~~L~~   25 (437)
T 3sx6_A            5 AHVVILGAGTGGMPAAYEMKE   25 (437)
T ss_dssp             CEEEEECCSTTHHHHHHHHHH
T ss_pred             CcEEEECCcHHHHHHHHHHhc
Confidence            699999999999999999998

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=97.31  E-value=0.00011  Score=52.86  Aligned_cols=24  Identities=29%  Similarity=0.487  Sum_probs=21.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      .++|++|||+|.+|+.+|..|++.
T Consensus        16 ~~yD~IIVGsG~aG~v~A~rLse~   39 (526)
T 3t37_A           16 PNCDIVIVGGGSAGSLLAARLSED   39 (526)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTS
T ss_pred             CCeeEEEECccHHHHHHHHHHHhC
Confidence            469999999999999999999873

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=97.25  E-value=0.00021  Score=50.60  Aligned_cols=26  Identities=27%  Similarity=0.400  Sum_probs=21.8

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      .++.+|+|||+|++|+++|..|.+.+
T Consensus         7 ~~~~~~vIvGgG~AGl~aA~~L~~~~   32 (385)
T 3klj_A            7 HKSTKILILGAGPAGFSAAKAALGKC   32 (385)
T ss_dssp             -CBCSEEEECCSHHHHHHHHHHTTTC
T ss_pred             cCCCCEEEEcCcHHHHHHHHHHhCCC
Confidence            35689999999999999999995544

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=97.18  E-value=0.00012  Score=54.17  Aligned_cols=25  Identities=28%  Similarity=0.398  Sum_probs=22.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++|++|||+|.+|+.+|..|++ |.
T Consensus        25 ~~yD~IIVGsG~AG~v~A~rLse-g~   49 (536)
T 1ju2_A           25 GSYDYVIVGGGTSGCPLAATLSE-KY   49 (536)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTT-TS
T ss_pred             CcccEEEECccHHHHHHHHHHhc-CC
Confidence            56999999999999999999987 64

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=97.17  E-value=0.00028  Score=51.47  Aligned_cols=26  Identities=27%  Similarity=0.524  Sum_probs=23.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++|++|||+|++|+.+|..|++.|.
T Consensus         4 ~~~d~~iiG~G~~g~~~a~~l~~~~~   29 (504)
T 1n4w_A            4 GYVPAVVIGTGYGAAVSALRLGEAGV   29 (504)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCC
Confidence            46899999999999999999999875

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=97.15  E-value=0.00022  Score=53.71  Aligned_cols=26  Identities=23%  Similarity=0.282  Sum_probs=23.4

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ..++|++|||+|.||+.+|..|++.|
T Consensus         4 ~~~yDyIVVGgG~AG~v~A~rLse~~   29 (577)
T 3q9t_A            4 GSHFDFVIVGGGTAGNTVAGRLAENP   29 (577)
T ss_dssp             TCEEEEEEESCSHHHHHHHHHHTTST
T ss_pred             CCcccEEEECCcHHHHHHHHHHHhCC
Confidence            35699999999999999999999876

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=97.10  E-value=0.00019  Score=55.95  Aligned_cols=24  Identities=29%  Similarity=0.398  Sum_probs=22.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      .++|+|||+|++||++|+.|+++|
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g   79 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLA   79 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcC
Confidence            478999999999999999999876

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=97.07  E-value=0.00046  Score=50.48  Aligned_cols=27  Identities=41%  Similarity=0.652  Sum_probs=24.2

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..++|++|||+|++|+.+|..|++.|.
T Consensus         9 ~~~~d~~iiG~G~~g~~~a~~l~~~~~   35 (507)
T 1coy_A            9 GDRVPALVIGSGYGGAVAALRLTQAGI   35 (507)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCC
Confidence            356999999999999999999999775

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=96.98  E-value=0.00033  Score=51.39  Aligned_cols=27  Identities=19%  Similarity=0.149  Sum_probs=23.0

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++++|+|||+|++|+.+|..|+++++
T Consensus        40 ~~KprVVIIGgG~AGl~~A~~L~~~~~   66 (502)
T 4g6h_A           40 SDKPNVLILGSGWGAISFLKHIDTKKY   66 (502)
T ss_dssp             CSSCEEEEECSSHHHHHHHHHSCTTTC
T ss_pred             CCCCCEEEECCcHHHHHHHHHhhhCCC
Confidence            345789999999999999999987664

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=96.95  E-value=0.00093  Score=49.97  Aligned_cols=27  Identities=30%  Similarity=0.410  Sum_probs=23.8

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHH-CCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTK-LGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~-~G~   67 (68)
                      +.++|++|||+|++|+.+|..|++ .|.
T Consensus        22 ~~~~d~iivG~G~~g~~~a~~l~~~~~~   49 (587)
T 1gpe_A           22 GKTYDYIIAGGGLTGLTVAAKLTENPKI   49 (587)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHTSTTC
T ss_pred             cccCCEEEECcCHHHHHHHHHHHhCCCC
Confidence            356999999999999999999998 554

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=96.89  E-value=0.0005  Score=51.95  Aligned_cols=25  Identities=32%  Similarity=0.409  Sum_probs=22.4

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      ...+|++|||+|.+|+.+|..|++.
T Consensus        17 ~~~yDyIIVGgG~AG~vlA~RLse~   41 (583)
T 3qvp_A           17 GRTVDYIIAGGGLTGLTTAARLTEN   41 (583)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHTTS
T ss_pred             CCCccEEEECCcHHHHHHHHHHHhC
Confidence            3569999999999999999999864

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=96.74  E-value=0.00088  Score=49.55  Aligned_cols=26  Identities=19%  Similarity=0.399  Sum_probs=23.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHC-CC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKL-GI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~-G~   67 (68)
                      ..+|++|||+|++|+.+|..|+++ |.
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~   38 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSEDPAV   38 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCC
Confidence            469999999999999999999987 53

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=96.48  E-value=0.00081  Score=50.52  Aligned_cols=22  Identities=36%  Similarity=0.502  Sum_probs=20.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHH
Q 035312           43 VVPVLIVGAGPVGLVLSILLTK   64 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~   64 (68)
                      ++|++|||+|.+|+.+|..|++
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse   23 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTE   23 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTT
T ss_pred             CcCEEEECCcHHHHHHHHHHHh
Confidence            4899999999999999999987

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=95.72  E-value=0.01  Score=42.04  Aligned_cols=26  Identities=27%  Similarity=0.496  Sum_probs=23.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+++|||+|++|+.+|..|++.|.
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~~g~  173 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAKAGK  173 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC
Confidence            45799999999999999999998874

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=95.53  E-value=0.023  Score=34.47  Aligned_cols=27  Identities=33%  Similarity=0.404  Sum_probs=23.8

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....+|+|+|+|..|...|..|.+.|+
T Consensus         5 ~~~~~viIiG~G~~G~~la~~L~~~g~   31 (140)
T 3fwz_A            5 DICNHALLVGYGRVGSLLGEKLLASDI   31 (140)
T ss_dssp             CCCSCEEEECCSHHHHHHHHHHHHTTC
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHCCC
Confidence            345789999999999999999999886

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=95.15  E-value=0.02  Score=44.21  Aligned_cols=26  Identities=15%  Similarity=0.349  Sum_probs=24.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||+|+.|...|..|+++|.
T Consensus         7 ~~~D~~i~GtGl~~~~~a~~~~~~g~   32 (650)
T 1vg0_A            7 SDFDVIVIGTGLPESIIAAACSRSGQ   32 (650)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhCCC
Confidence            46999999999999999999999986

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=95.14  E-value=0.024  Score=34.74  Aligned_cols=26  Identities=23%  Similarity=0.405  Sum_probs=22.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+|+|+|+|..|..+|..|.+.|.
T Consensus        18 ~~~~v~IiG~G~iG~~la~~L~~~g~   43 (155)
T 2g1u_A           18 KSKYIVIFGCGRLGSLIANLASSSGH   43 (155)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC
Confidence            34679999999999999999998875

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=95.13  E-value=0.014  Score=38.79  Aligned_cols=25  Identities=20%  Similarity=0.335  Sum_probs=22.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|+.|+-+|..|++.|.
T Consensus       145 ~k~vvViGgG~ig~E~A~~l~~~g~  169 (312)
T 4gcm_A          145 NKRLFVIGGGDSAVEEGTFLTKFAD  169 (312)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCC
Confidence            4689999999999999999988764

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=94.99  E-value=0.027  Score=31.98  Aligned_cols=23  Identities=30%  Similarity=0.564  Sum_probs=21.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ..|+|+|+|..|..++..|.++|
T Consensus         6 ~~v~I~G~G~iG~~~~~~l~~~g   28 (118)
T 3ic5_A            6 WNICVVGAGKIGQMIAALLKTSS   28 (118)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCC
Confidence            57999999999999999999887

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=94.93  E-value=0.022  Score=40.12  Aligned_cols=25  Identities=24%  Similarity=0.436  Sum_probs=22.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|+.|+.+|..|++.|.
T Consensus       146 ~~~vvVIGgG~~g~E~A~~l~~~g~  170 (385)
T 3klj_A          146 KGKAFIIGGGILGIELAQAIIDSGT  170 (385)
T ss_dssp             HSCEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC
Confidence            4789999999999999999998875

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=94.89  E-value=0.02  Score=41.09  Aligned_cols=25  Identities=28%  Similarity=0.391  Sum_probs=22.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|.|||.|.+|+++|..|+++|+
T Consensus         5 ~~~v~viG~G~~G~~~a~~l~~~G~   29 (439)
T 2x5o_A            5 GKNVVIIGLGLTGLSCVDFFLARGV   29 (439)
T ss_dssp             TCCEEEECCHHHHHHHHHHHHTTTC
T ss_pred             CCEEEEEeecHHHHHHHHHHHhCCC
Confidence            4679999999999999999999986

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=94.89  E-value=0.03  Score=32.72  Aligned_cols=24  Identities=33%  Similarity=0.555  Sum_probs=21.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+|+|+|+|..|...|..|.+.|+
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~   28 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGH   28 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC
Confidence            479999999999999999998875

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=94.87  E-value=0.024  Score=40.21  Aligned_cols=25  Identities=32%  Similarity=0.683  Sum_probs=22.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|++|+.+|..|++.|.
T Consensus       167 ~~~vvIiGgG~~g~e~A~~l~~~g~  191 (455)
T 2yqu_A          167 PKRLIVVGGGVIGLELGVVWHRLGA  191 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC
Confidence            4789999999999999999998874

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=94.83  E-value=0.019  Score=37.80  Aligned_cols=25  Identities=28%  Similarity=0.449  Sum_probs=22.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|||+|..|+-+|..|++.|.
T Consensus       152 ~~~vvViGgG~ig~e~A~~l~~~G~  176 (314)
T 4a5l_A          152 NKVLMVVGGGDAAMEEALHLTKYGS  176 (314)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSS
T ss_pred             CCeEEEECCChHHHHHHHHHHHhCC
Confidence            4689999999999999999998774

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=94.77  E-value=0.045  Score=33.38  Aligned_cols=25  Identities=12%  Similarity=0.181  Sum_probs=22.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +.+|+|+|+|..|...+..|.+.|+
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~   27 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQ   27 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC
Confidence            4689999999999999999998875

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=94.72  E-value=0.046  Score=31.96  Aligned_cols=24  Identities=21%  Similarity=0.364  Sum_probs=21.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+|+|+|+|..|..++..|.+.|+
T Consensus         7 ~~v~I~G~G~iG~~~a~~l~~~g~   30 (144)
T 2hmt_A            7 KQFAVIGLGRFGGSIVKELHRMGH   30 (144)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCC
Confidence            579999999999999999998875

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.71  E-value=0.022  Score=40.61  Aligned_cols=25  Identities=40%  Similarity=0.642  Sum_probs=22.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|++|+.+|..|++.|.
T Consensus       171 ~~~vvViGgG~~g~e~A~~l~~~g~  195 (458)
T 1lvl_A          171 PQHLVVVGGGYIGLELGIAYRKLGA  195 (458)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCC
Confidence            4689999999999999999998774

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.69  E-value=0.028  Score=39.83  Aligned_cols=25  Identities=20%  Similarity=0.533  Sum_probs=22.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|++|+.+|..|++.|.
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~  194 (455)
T 1ebd_A          170 PKSLVVIGGGYIGIELGTAYANFGT  194 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC
Confidence            4789999999999999999998874

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=94.60  E-value=0.048  Score=32.56  Aligned_cols=24  Identities=25%  Similarity=0.361  Sum_probs=22.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+|+|+|+|..|...|..|.++|+
T Consensus         7 ~~v~I~G~G~iG~~la~~L~~~g~   30 (141)
T 3llv_A            7 YEYIVIGSEAAGVGLVRELTAAGK   30 (141)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC
Confidence            579999999999999999999886

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=94.59  E-value=0.03  Score=40.00  Aligned_cols=25  Identities=36%  Similarity=0.671  Sum_probs=22.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|||+|++|+.+|..|++.|.
T Consensus       169 ~~~vvViGgG~~g~e~A~~l~~~g~  193 (464)
T 2eq6_A          169 PKRLLVIGGGAVGLELGQVYRRLGA  193 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC
Confidence            4789999999999999999998874

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=94.50  E-value=0.037  Score=38.24  Aligned_cols=25  Identities=32%  Similarity=0.406  Sum_probs=22.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|||+|+.|+.+|..|++.|.
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~  169 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGY  169 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC
Confidence            5789999999999999999998874

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.40  E-value=0.031  Score=38.92  Aligned_cols=24  Identities=33%  Similarity=0.501  Sum_probs=22.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+++|||+|++|+.+|..|++.|.
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~  167 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAGY  167 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTC
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCC
Confidence            789999999999999999998874

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=94.32  E-value=0.029  Score=40.45  Aligned_cols=25  Identities=36%  Similarity=0.465  Sum_probs=23.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|.|||.|.+|+++|..|+++|+
T Consensus         9 ~k~v~viG~G~sG~s~A~~l~~~G~   33 (451)
T 3lk7_A            9 NKKVLVLGLARSGEAAARLLAKLGA   33 (451)
T ss_dssp             TCEEEEECCTTTHHHHHHHHHHTTC
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCC
Confidence            4789999999999999999999986

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=94.19  E-value=0.042  Score=39.06  Aligned_cols=25  Identities=28%  Similarity=0.565  Sum_probs=22.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|||+|+.|+.+|..|++.|.
T Consensus       183 ~~~vvViGgG~~g~e~A~~l~~~g~  207 (478)
T 1v59_A          183 PKRLTIIGGGIIGLEMGSVYSRLGS  207 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCC
Confidence            4789999999999999999998874

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=94.15  E-value=0.035  Score=39.84  Aligned_cols=26  Identities=35%  Similarity=0.603  Sum_probs=23.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+|+|||+|++|+.+|..|++.|.
T Consensus       185 ~~~~vvViGgG~~g~e~A~~l~~~g~  210 (480)
T 3cgb_A          185 KVEDVTIIGGGAIGLEMAETFVELGK  210 (480)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHTTC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCC
Confidence            45789999999999999999998874

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=94.09  E-value=0.049  Score=36.58  Aligned_cols=25  Identities=20%  Similarity=0.276  Sum_probs=22.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|.+|+-+|..|++.|.
T Consensus       166 ~~~vvVvG~G~~g~e~a~~l~~~g~  190 (369)
T 3d1c_A          166 KGQYVVIGGNESGFDAAYQLAKNGS  190 (369)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCcCHHHHHHHHHhcCC
Confidence            3589999999999999999998764

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=94.00  E-value=0.048  Score=38.78  Aligned_cols=25  Identities=36%  Similarity=0.533  Sum_probs=22.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|||+|+.|+.+|..|++.|.
T Consensus       167 ~~~vvViGgG~~g~e~A~~l~~~g~  191 (450)
T 1ges_A          167 PERVAVVGAGYIGVELGGVINGLGA  191 (450)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCC
Confidence            4689999999999999999998874

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=93.91  E-value=0.052  Score=38.13  Aligned_cols=25  Identities=36%  Similarity=0.583  Sum_probs=22.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|+.|+.+|..|++.|.
T Consensus       145 ~~~vvViGgG~~g~E~A~~l~~~g~  169 (408)
T 2gqw_A          145 QSRLLIVGGGVIGLELAATARTAGV  169 (408)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC
Confidence            5789999999999999999998874

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=93.90  E-value=0.039  Score=36.39  Aligned_cols=24  Identities=21%  Similarity=0.351  Sum_probs=21.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ..+|+|||+|.+|+-+|..|++.|
T Consensus       163 ~~~v~VvG~G~~g~e~a~~l~~~~  186 (357)
T 4a9w_A          163 GMRVAIIGGGNSGAQILAEVSTVA  186 (357)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTS
T ss_pred             CCEEEEECCCcCHHHHHHHHHhhC
Confidence            478999999999999999998764

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.76  E-value=0.079  Score=33.01  Aligned_cols=25  Identities=32%  Similarity=0.319  Sum_probs=22.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHC-CC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKL-GI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~-G~   67 (68)
                      ..+|+|+|+|..|..+|..|.+. |+
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~   64 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGK   64 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCC
Confidence            45899999999999999999887 75

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=93.72  E-value=0.067  Score=38.45  Aligned_cols=26  Identities=31%  Similarity=0.505  Sum_probs=23.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+|+|||+|+.|+.+|..|++.|.
T Consensus       193 ~~~~vvVIGgG~ig~E~A~~l~~~g~  218 (490)
T 2bc0_A          193 DIKRVAVVGAGYIGVELAEAFQRKGK  218 (490)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCC
Confidence            35789999999999999999998874

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=93.67  E-value=0.06  Score=38.51  Aligned_cols=25  Identities=40%  Similarity=0.578  Sum_probs=22.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|..|+.+|..|++.|.
T Consensus       166 ~~~vvVvGgG~~g~e~A~~l~~~G~  190 (463)
T 2r9z_A          166 PKRVAIIGAGYIGIELAGLLRSFGS  190 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCC
Confidence            4689999999999999999998874

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=93.60  E-value=0.051  Score=38.38  Aligned_cols=26  Identities=27%  Similarity=0.202  Sum_probs=22.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+|+|||+|.+|+-.|..|++.|.
T Consensus       211 ~~k~VvVvG~G~sg~e~A~~l~~~~~  236 (447)
T 2gv8_A          211 VGESVLVVGGASSANDLVRHLTPVAK  236 (447)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHTTTSC
T ss_pred             CCCEEEEEccCcCHHHHHHHHHHHhC
Confidence            34789999999999999999987763

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=93.56  E-value=0.06  Score=35.35  Aligned_cols=24  Identities=25%  Similarity=0.331  Sum_probs=21.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ..+|+|||+|++|+-+|..|++.|
T Consensus       144 ~~~v~VvG~G~~g~e~A~~l~~~g  167 (310)
T 1fl2_A          144 GKRVAVIGGGNSGVEAAIDLAGIV  167 (310)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTB
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhC
Confidence            468999999999999999998765

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=93.43  E-value=0.064  Score=35.24  Aligned_cols=25  Identities=20%  Similarity=0.302  Sum_probs=22.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|+.|+-+|..|++.|.
T Consensus       143 ~~~v~VvG~G~~g~e~A~~l~~~g~  167 (311)
T 2q0l_A          143 NKEVAVLGGGDTAVEEAIYLANICK  167 (311)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHTTSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCC
Confidence            4789999999999999999988763

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=93.41  E-value=0.078  Score=37.56  Aligned_cols=25  Identities=20%  Similarity=0.402  Sum_probs=22.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|+.|+.+|..|++.|.
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~G~  173 (431)
T 1q1r_A          149 DNRLVVIGGGYIGLEVAATAIKANM  173 (431)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC
Confidence            4789999999999999999998874

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=93.31  E-value=0.075  Score=37.80  Aligned_cols=25  Identities=28%  Similarity=0.599  Sum_probs=22.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|||+|+.|+.+|..|++.|.
T Consensus       178 ~~~vvViGgG~~g~E~A~~l~~~g~  202 (474)
T 1zmd_A          178 PEKMVVIGAGVIGVELGSVWQRLGA  202 (474)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCC
Confidence            4689999999999999999998874

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=93.24  E-value=0.096  Score=38.45  Aligned_cols=25  Identities=32%  Similarity=0.331  Sum_probs=22.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|..|+-+|..|++.|.
T Consensus       286 ~~~vvViGgG~~g~E~A~~l~~~g~  310 (598)
T 2x8g_A          286 PGKTLVIGASYVALECAGFLASLGG  310 (598)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC
Confidence            4589999999999999999999875

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=93.23  E-value=0.084  Score=37.29  Aligned_cols=25  Identities=28%  Similarity=0.523  Sum_probs=22.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|||+|+.|+.+|..|++.|.
T Consensus       148 ~~~vvViGgG~~g~E~A~~l~~~g~  172 (449)
T 3kd9_A          148 VENVVIIGGGYIGIEMAEAFAAQGK  172 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC
Confidence            3689999999999999999998874

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=93.17  E-value=0.082  Score=38.14  Aligned_cols=25  Identities=36%  Similarity=0.654  Sum_probs=22.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|+.|+.+|..|++.|.
T Consensus       174 ~k~vvViGgG~ig~E~A~~l~~~g~  198 (492)
T 3ic9_A          174 PKSVAVFGPGVIGLELGQALSRLGV  198 (492)
T ss_dssp             CSEEEEESSCHHHHHHHHHHHHTTC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC
Confidence            4789999999999999999998874

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=93.15  E-value=0.069  Score=38.22  Aligned_cols=25  Identities=32%  Similarity=0.599  Sum_probs=22.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|||+|+.|+-+|..|++.|.
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~G~  209 (482)
T 1ojt_A          185 PGKLLIIGGGIIGLEMGTVYSTLGS  209 (482)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC
Confidence            5789999999999999999988764

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=93.09  E-value=0.085  Score=37.41  Aligned_cols=25  Identities=28%  Similarity=0.687  Sum_probs=22.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|||+|+.|+-+|..|++.|.
T Consensus       171 ~~~vvViGgG~~g~E~A~~l~~~g~  195 (464)
T 2a8x_A          171 PKSIIIAGAGAIGMEFGYVLKNYGV  195 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCC
Confidence            4789999999999999999998874

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=93.09  E-value=0.095  Score=36.73  Aligned_cols=25  Identities=36%  Similarity=0.618  Sum_probs=22.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|+.|+.+|..|++.|.
T Consensus       143 ~~~vvViGgG~~g~E~A~~l~~~g~  167 (410)
T 3ef6_A          143 ATRLLIVGGGLIGCEVATTARKLGL  167 (410)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC
Confidence            5789999999999999999998874

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=93.01  E-value=0.069  Score=38.32  Aligned_cols=25  Identities=24%  Similarity=0.179  Sum_probs=22.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|.+|+-+|..|++.|.
T Consensus       197 ~k~VvVVG~G~sg~eiA~~l~~~g~  221 (464)
T 2xve_A          197 DKTVLLVGSSYSAEDIGSQCYKYGA  221 (464)
T ss_dssp             TSEEEEECCSTTHHHHHHHHHHTTC
T ss_pred             CCEEEEEcCCCCHHHHHHHHHHhCC
Confidence            4789999999999999999998764

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=92.97  E-value=0.067  Score=35.93  Aligned_cols=26  Identities=38%  Similarity=0.505  Sum_probs=23.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+|+|||+|-.|..+|..|++.|+
T Consensus        30 ~~~~VlVvG~Gg~G~~va~~La~~Gv   55 (249)
T 1jw9_B           30 KDSRVLIVGLGGLGCAASQYLASAGV   55 (249)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             hCCeEEEEeeCHHHHHHHHHHHHcCC
Confidence            35789999999999999999999885

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=92.97  E-value=0.065  Score=37.59  Aligned_cols=24  Identities=21%  Similarity=0.232  Sum_probs=21.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      ...+|+|||+|.+|+-+|..|++.
T Consensus       226 ~~~~vvVvGgG~sg~e~a~~l~~~  249 (463)
T 3s5w_A          226 KPMKIAIIGGGQSAAEAFIDLNDS  249 (463)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCHhHHHHHHHHHhc
Confidence            357899999999999999999876

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=92.85  E-value=0.078  Score=34.87  Aligned_cols=25  Identities=28%  Similarity=0.434  Sum_probs=22.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|++|+-+|..|++.|.
T Consensus       173 ~~~v~vvG~G~~g~e~a~~l~~~g~  197 (338)
T 3itj_A          173 NKPLAVIGGGDSACEEAQFLTKYGS  197 (338)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCC
Confidence            4689999999999999999988763

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=92.83  E-value=0.092  Score=36.80  Aligned_cols=26  Identities=46%  Similarity=0.649  Sum_probs=23.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+|+|||+|-.|-.+|..|++.|+
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~aGV   60 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTRCGI   60 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             hCCeEEEECcCHHHHHHHHHHHHcCC
Confidence            45899999999999999999999885

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=92.75  E-value=0.069  Score=37.79  Aligned_cols=25  Identities=24%  Similarity=0.557  Sum_probs=22.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|+.|+-+|..|++.|.
T Consensus       177 ~~~vvViGgG~~g~e~A~~l~~~g~  201 (470)
T 1dxl_A          177 PKKLVVIGAGYIGLEMGSVWGRIGS  201 (470)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC
Confidence            4789999999999999999988764

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=92.75  E-value=0.1  Score=37.68  Aligned_cols=25  Identities=40%  Similarity=0.573  Sum_probs=22.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|+.|+-+|..|++.|.
T Consensus       151 ~~~vvViGgG~~g~e~A~~l~~~g~  175 (565)
T 3ntd_A          151 VEHATVVGGGFIGLEMMESLHHLGI  175 (565)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCC
Confidence            3589999999999999999998874

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=92.73  E-value=0.12  Score=36.63  Aligned_cols=25  Identities=24%  Similarity=0.409  Sum_probs=22.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|||+|+.|+-+|..|++.|.
T Consensus       176 ~~~vvViGgG~~g~E~A~~l~~~g~  200 (467)
T 1zk7_A          176 PERLAVIGSSVVALELAQAFARLGS  200 (467)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC
Confidence            4789999999999999999998774

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=92.69  E-value=0.084  Score=34.71  Aligned_cols=25  Identities=16%  Similarity=0.351  Sum_probs=22.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|++|+-+|..|++.|.
T Consensus       145 ~~~v~ViG~G~~g~e~A~~l~~~g~  169 (320)
T 1trb_A          145 NQKVAVIGGGNTAVEEALYLSNIAS  169 (320)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCC
Confidence            4689999999999999999987763

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=92.58  E-value=0.16  Score=36.41  Aligned_cols=25  Identities=36%  Similarity=0.425  Sum_probs=22.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|||+|+.|+-+|..|++.|.
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~  209 (488)
T 3dgz_A          185 PGKTLVVGASYVALECAGFLTGIGL  209 (488)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC
Confidence            4689999999999999999998874

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=92.58  E-value=0.11  Score=37.20  Aligned_cols=25  Identities=36%  Similarity=0.567  Sum_probs=22.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|||+|+.|+-+|..|++.|.
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~  209 (479)
T 2hqm_A          185 PKKVVVVGAGYIGIELAGVFHGLGS  209 (479)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC
Confidence            4789999999999999999998874

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=92.53  E-value=0.12  Score=38.46  Aligned_cols=26  Identities=38%  Similarity=0.379  Sum_probs=23.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+++|||+|..|+-.|..+++.|.
T Consensus       222 lP~~lvIIGgG~IGlE~A~~~~~lG~  247 (542)
T 4b1b_A          222 DPGKTLVVGASYVALECSGFLNSLGY  247 (542)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CCceEEEECCCHHHHHHHHHHHhcCC
Confidence            45789999999999999999998875

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=92.52  E-value=0.089  Score=34.87  Aligned_cols=26  Identities=27%  Similarity=0.454  Sum_probs=22.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+|+|||+|..|+-+|..|++.|.
T Consensus       158 ~~~~v~VvG~G~~g~e~A~~l~~~g~  183 (333)
T 1vdc_A          158 RNKPLAVIGGGDSAMEEANFLTKYGS  183 (333)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTSS
T ss_pred             CCCeEEEECCChHHHHHHHHHHhcCC
Confidence            34689999999999999999987663

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=92.49  E-value=0.099  Score=37.24  Aligned_cols=25  Identities=44%  Similarity=0.490  Sum_probs=22.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|||+|+.|+-+|..+++.|.
T Consensus       147 ~~~vvViGgG~ig~E~A~~l~~~g~  171 (437)
T 4eqs_A          147 VDKVLVVGAGYVSLEVLENLYERGL  171 (437)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CcEEEEECCccchhhhHHHHHhcCC
Confidence            4589999999999999999998774

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=92.48  E-value=0.088  Score=34.96  Aligned_cols=25  Identities=24%  Similarity=0.399  Sum_probs=21.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|+.|+-+|..|++.|.
T Consensus       152 ~~~v~VvG~G~~g~e~A~~l~~~g~  176 (325)
T 2q7v_A          152 GKKVVVIGGGDAAVEEGMFLTKFAD  176 (325)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCC
Confidence            4689999999999999999987763

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=92.48  E-value=0.14  Score=35.56  Aligned_cols=25  Identities=28%  Similarity=0.300  Sum_probs=22.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|..|.++|+.|+.+|+
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~   31 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQT   31 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC
Confidence            3689999999999999999998875

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=92.45  E-value=0.11  Score=37.54  Aligned_cols=25  Identities=32%  Similarity=0.519  Sum_probs=22.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|||+|+.|+-+|..|++.|.
T Consensus       176 ~~~vvViGgG~ig~E~A~~l~~~g~  200 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVIKRLGI  200 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTC
T ss_pred             CCeEEEECChHHHHHHHHHHHHcCC
Confidence            4689999999999999999998774

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=92.44  E-value=0.12  Score=36.59  Aligned_cols=25  Identities=20%  Similarity=0.359  Sum_probs=22.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|||+|+.|+.+|..|++.|.
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~g~  173 (452)
T 2cdu_A          149 AKTITIIGSGYIGAELAEAYSNQNY  173 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTC
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCC
Confidence            4789999999999999999998774

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=92.40  E-value=0.13  Score=36.30  Aligned_cols=27  Identities=22%  Similarity=0.285  Sum_probs=23.2

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +...+|+|||+|..|.++|+.|+.+|+
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~   31 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKEL   31 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCC
Confidence            445689999999999999999998875

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=92.39  E-value=0.13  Score=34.75  Aligned_cols=24  Identities=33%  Similarity=0.614  Sum_probs=22.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+|+|||+|-.|...|..|++.|+
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~~g~   31 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQRGI   31 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC
Confidence            479999999999999999999885

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=92.34  E-value=0.12  Score=37.00  Aligned_cols=26  Identities=31%  Similarity=0.644  Sum_probs=22.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+|+|||+|+.|+-+|..|++.|.
T Consensus       197 ~~~~vvViGgG~~g~E~A~~l~~~g~  222 (491)
T 3urh_A          197 VPASMIVVGGGVIGLELGSVWARLGA  222 (491)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC
Confidence            34789999999999999999988764

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=92.25  E-value=0.1  Score=34.93  Aligned_cols=25  Identities=16%  Similarity=0.340  Sum_probs=22.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|+.|+-+|..|++.|.
T Consensus       155 ~~~v~ViG~G~~g~e~a~~l~~~g~  179 (335)
T 2a87_A          155 DQDIAVIGGGDSAMEEATFLTRFAR  179 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTTCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCC
Confidence            4789999999999999999987763

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=92.25  E-value=0.13  Score=37.29  Aligned_cols=26  Identities=19%  Similarity=0.242  Sum_probs=22.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+|+|||+|.+|+-+|..+.+.|.
T Consensus       263 ~gk~VvVIGgG~~a~d~A~~~~r~Ga  288 (456)
T 2vdc_G          263 AGKHVVVLGGGDTAMDCVRTAIRQGA  288 (456)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCC
Confidence            35789999999999999999988774

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=92.24  E-value=0.15  Score=36.29  Aligned_cols=25  Identities=28%  Similarity=0.639  Sum_probs=22.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|||+|+.|+-+|..|++.|.
T Consensus       172 ~~~vvViGgG~~g~e~A~~l~~~g~  196 (466)
T 3l8k_A          172 PQDMVIIGAGYIGLEIASIFRLMGV  196 (466)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC
Confidence            4689999999999999999998874

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=92.20  E-value=0.18  Score=36.63  Aligned_cols=25  Identities=32%  Similarity=0.400  Sum_probs=22.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|||+|..|+-+|..|++.|.
T Consensus       210 ~~~vvVIGgG~ig~E~A~~l~~~G~  234 (519)
T 3qfa_A          210 PGKTLVVGASYVALECAGFLAGIGL  234 (519)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCC
Confidence            4579999999999999999998875

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=92.14  E-value=0.13  Score=35.67  Aligned_cols=26  Identities=27%  Similarity=0.415  Sum_probs=22.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....|+|||+|..|.++|+.|+.+|+
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~   30 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSI   30 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC
Confidence            34689999999999999999988774

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=92.14  E-value=0.095  Score=38.79  Aligned_cols=25  Identities=16%  Similarity=0.279  Sum_probs=22.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ..++|+|||+|.+|+-+|..|++.+
T Consensus       190 ~~krV~VIG~G~sgve~a~~l~~~~  214 (549)
T 4ap3_A          190 TGKRVGVIGTGSSGIQSIPIIAEQA  214 (549)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHHB
T ss_pred             CCCEEEEECCCchHHHHHHHHHhhC
Confidence            3578999999999999999998765

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=92.13  E-value=0.094  Score=34.73  Aligned_cols=24  Identities=21%  Similarity=0.364  Sum_probs=21.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ..+|+|||+|+.|+-+|..|++.|
T Consensus       155 ~~~v~viG~G~~g~e~a~~l~~~g  178 (319)
T 3cty_A          155 GKRVVTIGGGNSGAIAAISMSEYV  178 (319)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTB
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhC
Confidence            468999999999999999998765

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=92.13  E-value=0.085  Score=39.03  Aligned_cols=25  Identities=16%  Similarity=0.294  Sum_probs=22.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ..++|+|||+|.+|+-+|..|++.+
T Consensus       184 ~~krV~VIG~G~tgve~a~~la~~~  208 (545)
T 3uox_A          184 TGKRVGVIGTGATGVQIIPIAAETA  208 (545)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHTTTB
T ss_pred             CCCeEEEECCCccHHHHHHHHHhhC
Confidence            3478999999999999999998765

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=92.12  E-value=0.094  Score=38.74  Aligned_cols=25  Identities=24%  Similarity=0.193  Sum_probs=22.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ..++|+|||+|.+|+-+|..|++.+
T Consensus       177 ~~krV~VIG~G~sgve~a~~l~~~~  201 (540)
T 3gwf_A          177 AGRRVGVIGTGSTGQQVITSLAPEV  201 (540)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTC
T ss_pred             ccceEEEECCCchHHHHHHHHHhhC
Confidence            3578999999999999999998775

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=92.12  E-value=0.14  Score=36.49  Aligned_cols=25  Identities=32%  Similarity=0.458  Sum_probs=22.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|||+|..|+-+|..|++.|.
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~  211 (478)
T 3dk9_A          187 PGRSVIVGAGYIAVEMAGILSALGS  211 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CccEEEECCCHHHHHHHHHHHHcCC
Confidence            4789999999999999999998874

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=92.08  E-value=0.14  Score=36.35  Aligned_cols=25  Identities=28%  Similarity=0.623  Sum_probs=22.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|||+|+.|+-+|..|++.|.
T Consensus       174 ~~~vvViGgG~~g~E~A~~l~~~g~  198 (468)
T 2qae_A          174 PKTMVVIGGGVIGLELGSVWARLGA  198 (468)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCC
Confidence            4789999999999999999998774

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=92.04  E-value=0.088  Score=34.93  Aligned_cols=25  Identities=28%  Similarity=0.275  Sum_probs=22.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|..|+-+|..|++.|.
T Consensus       152 ~~~v~viG~G~~g~e~a~~l~~~g~  176 (335)
T 2zbw_A          152 GKRVLIVGGGDSAVDWALNLLDTAR  176 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTTTSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhCC
Confidence            4789999999999999999987763

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=92.01  E-value=0.075  Score=34.31  Aligned_cols=25  Identities=16%  Similarity=0.379  Sum_probs=21.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ...+|+|||+|+.|+.+|..|++.|
T Consensus       140 ~~~~v~vvG~G~~~~e~a~~l~~~g  164 (297)
T 3fbs_A          140 DQGKIGVIAASPMAIHHALMLPDWG  164 (297)
T ss_dssp             TTCEEEEECCSTTHHHHHHHGGGTS
T ss_pred             cCCEEEEEecCccHHHHHHHhhhcC
Confidence            3578999999999999999998764

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=91.98  E-value=0.19  Score=34.49  Aligned_cols=24  Identities=42%  Similarity=0.488  Sum_probs=22.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+|+|||+|-.|...|..|+++|.
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~g~   27 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALAGE   27 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHTTC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCC
Confidence            479999999999999999999885

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=91.97  E-value=0.15  Score=35.51  Aligned_cols=25  Identities=28%  Similarity=0.494  Sum_probs=22.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|||+|+.|+.+|..|++.|.
T Consensus       142 ~~~vvViGgG~~g~e~A~~l~~~g~  166 (404)
T 3fg2_P          142 KKHVVVIGAGFIGLEFAATARAKGL  166 (404)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC
Confidence            4789999999999999999988774

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=91.87  E-value=0.14  Score=33.33  Aligned_cols=26  Identities=19%  Similarity=0.243  Sum_probs=22.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+|+|||+|+.|+-+|..|++.|.
T Consensus       153 ~~~~v~vvG~G~~~~e~a~~l~~~g~  178 (323)
T 3f8d_A          153 KNRVVAVIGGGDSALEGAEILSSYST  178 (323)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhCC
Confidence            34789999999999999999988663

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=91.83  E-value=0.22  Score=35.42  Aligned_cols=25  Identities=20%  Similarity=0.317  Sum_probs=22.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...|+|||+|..|..+|+.|+.+|+
T Consensus        21 ~~kV~ViGaG~vG~~~a~~la~~g~   45 (330)
T 3ldh_A           21 YNKITVVGCDAVGMADAISVLMKDL   45 (330)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHHHCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC
Confidence            4689999999999999999998876

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=91.72  E-value=0.16  Score=34.94  Aligned_cols=23  Identities=35%  Similarity=0.392  Sum_probs=21.3

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .|+|||+|..|...|+.|+.+|+
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~   24 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGS   24 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC
Confidence            58999999999999999999886

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=91.71  E-value=0.17  Score=35.27  Aligned_cols=25  Identities=32%  Similarity=0.671  Sum_probs=22.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|||+|+.|+.+|..|++.|.
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~  176 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGV  176 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCC
Confidence            5789999999999999999998774

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=91.69  E-value=0.16  Score=32.54  Aligned_cols=23  Identities=17%  Similarity=0.244  Sum_probs=21.2

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +|+|+|+|..|...|..|.++|+
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~   24 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKY   24 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC
Confidence            58999999999999999998886

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=91.66  E-value=0.16  Score=35.93  Aligned_cols=26  Identities=31%  Similarity=0.475  Sum_probs=22.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....|+|||+|..|.++|+.|+..|+
T Consensus         8 ~~~kV~ViGaG~vG~~~a~~l~~~~~   33 (326)
T 3vku_A            8 DHQKVILVGDGAVGSSYAYAMVLQGI   33 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC
Confidence            34689999999999999999988775

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=91.62  E-value=0.2  Score=35.54  Aligned_cols=26  Identities=31%  Similarity=0.519  Sum_probs=22.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+++|||+|+.|+-+|..|++.|.
T Consensus       179 ~~~~v~ViGgG~~g~e~A~~l~~~g~  204 (476)
T 3lad_A          179 VPGKLGVIGAGVIGLELGSVWARLGA  204 (476)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCC
Confidence            34689999999999999999998774

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=91.54  E-value=0.2  Score=33.65  Aligned_cols=24  Identities=21%  Similarity=0.389  Sum_probs=22.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..|.|||+|..|...|..|+++|+
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~   28 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGF   28 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC
Confidence            579999999999999999999885

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=91.53  E-value=0.17  Score=32.87  Aligned_cols=26  Identities=19%  Similarity=0.302  Sum_probs=22.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+++|||+|+.|+-+|..|++.|.
T Consensus       146 ~~~~v~viG~g~~~~e~a~~l~~~g~  171 (315)
T 3r9u_A          146 KNKEVAVLGGGDTALEEALYLANICS  171 (315)
T ss_dssp             TTSEEEEECCBHHHHHHHHHHHTTSS
T ss_pred             CcCEEEEECCCHHHHHHHHHHHhhCC
Confidence            34789999999999999999988763

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=91.50  E-value=0.22  Score=33.61  Aligned_cols=24  Identities=21%  Similarity=0.369  Sum_probs=21.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..|.|||+|..|...|..|+++|+
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~   39 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGH   39 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC
Confidence            469999999999999999999885

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=91.50  E-value=0.19  Score=35.10  Aligned_cols=24  Identities=29%  Similarity=0.621  Sum_probs=22.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..|+|||+|..|...|..|+++|+
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~   38 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDL   38 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC
Confidence            579999999999999999999886

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=91.50  E-value=0.18  Score=35.58  Aligned_cols=25  Identities=40%  Similarity=0.554  Sum_probs=22.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...|+|||+|..|.++|+.|+.+|+
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~   29 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGI   29 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC
Confidence            3579999999999999999998875

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=91.44  E-value=0.2  Score=35.11  Aligned_cols=25  Identities=28%  Similarity=0.417  Sum_probs=22.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|..|..+|+.|+++|+
T Consensus         8 ~~kv~ViGaG~vG~~ia~~l~~~g~   32 (315)
T 3tl2_A            8 RKKVSVIGAGFTGATTAFLLAQKEL   32 (315)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC
Confidence            4679999999999999999998875

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=91.44  E-value=0.17  Score=35.43  Aligned_cols=24  Identities=21%  Similarity=0.362  Sum_probs=22.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+|+|||+|-.|..+|..|+++|+
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~g~   33 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALREL   33 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC
Confidence            479999999999999999998876

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=91.41  E-value=0.17  Score=37.40  Aligned_cols=26  Identities=27%  Similarity=0.473  Sum_probs=23.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....|+|||.|..||.+|..|+++|+
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~~G~   45 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFALLGH   45 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCC
Confidence            34789999999999999999998875

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=91.40  E-value=0.21  Score=36.23  Aligned_cols=27  Identities=26%  Similarity=0.372  Sum_probs=23.5

Q ss_pred             cccCEEEEC-CCHHHHHHHHHHHHCCCC
Q 035312           42 AVVPVLIVG-AGPVGLVLSILLTKLGIF   68 (68)
Q Consensus        42 ~~~dV~IVG-aG~aGl~~A~~L~~~G~~   68 (68)
                      ...+|+||| +|..|.++|+.|+..+++
T Consensus        31 ~~~KV~ViGAaG~VG~~la~~l~~~~l~   58 (375)
T 7mdh_A           31 KLVNIAVSGAAGMISNHLLFKLASGEVF   58 (375)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHcCCcC
Confidence            457899999 799999999999988764

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=91.38  E-value=0.19  Score=32.84  Aligned_cols=23  Identities=26%  Similarity=0.488  Sum_probs=21.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +|.|||+|..|...|..|+++|+
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~   24 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGH   24 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCC
Confidence            48999999999999999999885

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=91.30  E-value=0.19  Score=36.70  Aligned_cols=25  Identities=24%  Similarity=0.389  Sum_probs=22.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|||+|..|+.+|..|++.|.
T Consensus       187 ~~~vvViGgG~~g~e~A~~l~~~g~  211 (588)
T 3ics_A          187 PRHATVIGGGFIGVEMVENLRERGI  211 (588)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC
Confidence            4689999999999999999998874

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=91.29  E-value=0.22  Score=35.50  Aligned_cols=25  Identities=40%  Similarity=0.522  Sum_probs=22.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|||+|+.|+-+|..|++.|.
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~  211 (483)
T 3dgh_A          187 PGKTLVVGAGYIGLECAGFLKGLGY  211 (483)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC
Confidence            4689999999999999999998874

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=91.24  E-value=0.11  Score=34.99  Aligned_cols=24  Identities=33%  Similarity=0.333  Sum_probs=21.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ..+|+|||+|++|+-+|..|++.|
T Consensus       163 ~~~vvVvG~G~~g~e~A~~l~~~g  186 (360)
T 3ab1_A          163 GKRVVIVGGGDSALDWTVGLIKNA  186 (360)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTTTS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcC
Confidence            468999999999999999998765

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=91.22  E-value=0.2  Score=33.04  Aligned_cols=24  Identities=38%  Similarity=0.595  Sum_probs=21.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+|.|||+|..|...|..|+++|+
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~   27 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGN   27 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCC
Confidence            369999999999999999999885

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=91.18  E-value=0.2  Score=34.55  Aligned_cols=24  Identities=29%  Similarity=0.369  Sum_probs=21.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..|+|||+|..|...|+.|+.+|+
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~   26 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKEL   26 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC
Confidence            469999999999999999998885

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=91.15  E-value=0.23  Score=34.68  Aligned_cols=24  Identities=25%  Similarity=0.610  Sum_probs=22.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..|+|||+|..|..+|..|+.+|+
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~   28 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNL   28 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC
Confidence            479999999999999999999886

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=91.14  E-value=0.21  Score=35.31  Aligned_cols=26  Identities=31%  Similarity=0.454  Sum_probs=22.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....|+|+|+|.+|+.++..+...|.
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga  196 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGA  196 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC
Confidence            35789999999999999999888774

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=91.13  E-value=0.15  Score=34.30  Aligned_cols=26  Identities=31%  Similarity=0.509  Sum_probs=23.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+|+|||+|-.|..+|..|++.|+
T Consensus        27 ~~~~VlvvG~GglG~~va~~La~~Gv   52 (251)
T 1zud_1           27 LDSQVLIIGLGGLGTPAALYLAGAGV   52 (251)
T ss_dssp             HTCEEEEECCSTTHHHHHHHHHHTTC
T ss_pred             hcCcEEEEccCHHHHHHHHHHHHcCC
Confidence            45799999999999999999999986

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=91.09  E-value=0.23  Score=34.86  Aligned_cols=25  Identities=28%  Similarity=0.344  Sum_probs=22.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...|+|||+|..|.++|+.|+.+|+
T Consensus         5 ~~kI~iiGaG~vG~~~a~~l~~~~~   29 (321)
T 3p7m_A            5 RKKITLVGAGNIGGTLAHLALIKQL   29 (321)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC
Confidence            4679999999999999999998875

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=91.07  E-value=0.21  Score=35.37  Aligned_cols=25  Identities=32%  Similarity=0.558  Sum_probs=22.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|||+|..|+.+|..|++.|.
T Consensus       147 ~~~vvViGgG~~g~E~A~~l~~~g~  171 (452)
T 3oc4_A          147 SQTVAVIGAGPIGMEAIDFLVKMKK  171 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC
Confidence            4689999999999999999998874

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=90.93  E-value=0.21  Score=34.05  Aligned_cols=24  Identities=33%  Similarity=0.702  Sum_probs=21.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+|+|||+|-.|...|..|+++|.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~   26 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGH   26 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC
Confidence            479999999999999999999875

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=90.88  E-value=0.2  Score=33.77  Aligned_cols=27  Identities=22%  Similarity=0.182  Sum_probs=23.5

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      -....|+|||+|..|...+..|.+.|.
T Consensus        29 L~gk~VLVVGgG~va~~ka~~Ll~~GA   55 (223)
T 3dfz_A           29 LKGRSVLVVGGGTIATRRIKGFLQEGA   55 (223)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHGGGCC
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC
Confidence            356899999999999999999988774

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=90.84  E-value=0.23  Score=33.97  Aligned_cols=25  Identities=36%  Similarity=0.507  Sum_probs=22.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|-.|...|..|+++|.
T Consensus        19 ~~kI~IiGaGa~G~~~a~~L~~~G~   43 (318)
T 3hwr_A           19 GMKVAIMGAGAVGCYYGGMLARAGH   43 (318)
T ss_dssp             -CEEEEESCSHHHHHHHHHHHHTTC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCC
Confidence            3579999999999999999999885

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=90.78  E-value=0.21  Score=36.71  Aligned_cols=25  Identities=36%  Similarity=0.647  Sum_probs=22.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .-+|+|||.|..|+.+|..|+++|+
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~   32 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGH   32 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCC
Confidence            3579999999999999999999885

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=90.72  E-value=0.21  Score=34.50  Aligned_cols=25  Identities=20%  Similarity=0.345  Sum_probs=21.9

Q ss_pred             ccCEEEECCCHHHHH-HHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLV-LSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~-~A~~L~~~G~   67 (68)
                      ..+|.|||.|.+|++ +|..|+++|+
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~   29 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGF   29 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTC
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCC
Confidence            357999999999996 8889999886

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=90.71  E-value=0.34  Score=31.66  Aligned_cols=24  Identities=42%  Similarity=0.591  Sum_probs=21.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..|+|+|+|..|..++..|.++|+
T Consensus         4 ~~ilVtGaG~iG~~l~~~L~~~g~   27 (286)
T 3gpi_A            4 SKILIAGCGDLGLELARRLTAQGH   27 (286)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCC
Confidence            579999999999999999998875

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=90.67  E-value=0.18  Score=35.72  Aligned_cols=25  Identities=36%  Similarity=0.643  Sum_probs=23.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|-.|..+|..|++.|+
T Consensus       118 ~~~VlvvG~GglGs~va~~La~aGv  142 (353)
T 3h5n_A          118 NAKVVILGCGGIGNHVSVILATSGI  142 (353)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC
Confidence            5789999999999999999999886

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=90.65  E-value=0.24  Score=34.77  Aligned_cols=25  Identities=32%  Similarity=0.429  Sum_probs=22.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...|+|+|+|.+|+.++..++..|.
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga  191 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGA  191 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC
Confidence            3689999999999999999988874

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=90.50  E-value=0.18  Score=36.77  Aligned_cols=24  Identities=25%  Similarity=0.331  Sum_probs=21.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ..+|+|||+|.+|+-+|..|++.|
T Consensus       355 ~k~V~ViGgG~~g~E~A~~L~~~g  378 (521)
T 1hyu_A          355 GKRVAVIGGGNSGVEAAIDLAGIV  378 (521)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHHB
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhC
Confidence            478999999999999999998765

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=90.48  E-value=0.25  Score=34.43  Aligned_cols=25  Identities=32%  Similarity=0.563  Sum_probs=22.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +..|+|||+|..|.++|+.|..+++
T Consensus         5 ~~KI~IiGaG~vG~~~a~~l~~~~~   29 (318)
T 1ez4_A            5 HQKVVLVGDGAVGSSYAFAMAQQGI   29 (318)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCC
Confidence            3689999999999999999988764

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=90.42  E-value=0.28  Score=33.20  Aligned_cols=24  Identities=21%  Similarity=0.293  Sum_probs=21.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+|+|||+|-.|...|..|++.|+
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~   28 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQ   28 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCC
Confidence            479999999999999999998875

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=90.42  E-value=0.072  Score=32.20  Aligned_cols=25  Identities=16%  Similarity=0.198  Sum_probs=21.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...|+|||+|..|...+..|.+.|+
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~   45 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQY   45 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC
Confidence            5689999999999999988877664

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=90.40  E-value=0.28  Score=33.96  Aligned_cols=25  Identities=36%  Similarity=0.519  Sum_probs=21.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...|+|||+|..|-+.|+.|+.+|+
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~   30 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGI   30 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC
Confidence            3579999999999999999987764

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=90.38  E-value=0.25  Score=35.64  Aligned_cols=21  Identities=29%  Similarity=0.445  Sum_probs=19.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHH
Q 035312           43 VVPVLIVGAGPVGLVLSILLT   63 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~   63 (68)
                      ..+|+|||+|..|+-+|..|+
T Consensus       145 ~~~vvVIGgG~~g~e~A~~L~  165 (460)
T 1cjc_A          145 CDTAVILGQGNVALDVARILL  165 (460)
T ss_dssp             SSEEEEESCSHHHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHh
Confidence            478999999999999999998

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=90.38  E-value=0.27  Score=34.47  Aligned_cols=26  Identities=31%  Similarity=0.475  Sum_probs=22.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+..|+|||+|..|.++|+.|..+++
T Consensus         8 ~~~KI~IiGaG~vG~~la~~l~~~~~   33 (326)
T 2zqz_A            8 DHQKVILVGDGAVGSSYAYAMVLQGI   33 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHcCCC
Confidence            44689999999999999999987764

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=90.33  E-value=0.24  Score=33.72  Aligned_cols=24  Identities=42%  Similarity=0.688  Sum_probs=21.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+|+|||+|-.|...|..|+++|.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~   26 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGE   26 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCC
Confidence            479999999999999999999885

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=90.22  E-value=0.13  Score=38.54  Aligned_cols=25  Identities=28%  Similarity=0.505  Sum_probs=22.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ...+|+|||+|..|+-+|..|++.|
T Consensus       493 ~~~~VvVIGgG~~g~E~A~~l~~~G  517 (671)
T 1ps9_A          493 VGNKVAIIGCGGIGFDTAMYLSQPG  517 (671)
T ss_dssp             CCSEEEEECCHHHHHHHHHHHTCCS
T ss_pred             CCCeEEEECCChhHHHHHHHHHhcC
Confidence            3478999999999999999998876

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=90.21  E-value=0.39  Score=34.42  Aligned_cols=25  Identities=28%  Similarity=0.464  Sum_probs=22.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|||+|+.|+-+|..|++.|.
T Consensus       182 ~~~vvViGgG~ig~E~A~~l~~~g~  206 (499)
T 1xdi_A          182 PDHLIVVGSGVTGAEFVDAYTELGV  206 (499)
T ss_dssp             CSSEEEESCSHHHHHHHHHHHHTTC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC
Confidence            4789999999999999999998774

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=90.20  E-value=0.25  Score=33.92  Aligned_cols=24  Identities=17%  Similarity=0.443  Sum_probs=21.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..|+|||+|..|...|..|+++|+
T Consensus         5 ~kI~VIGaG~~G~~ia~~la~~g~   28 (317)
T 2ewd_A            5 RKIAVIGSGQIGGNIAYIVGKDNL   28 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC
Confidence            479999999999999999998875

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=90.16  E-value=0.29  Score=35.18  Aligned_cols=25  Identities=32%  Similarity=0.470  Sum_probs=22.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...|+|+|+|.+|+.++..+...|.
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga  196 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSLGA  196 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC
Confidence            5789999999999999999888774

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=90.13  E-value=0.27  Score=35.68  Aligned_cols=24  Identities=17%  Similarity=0.340  Sum_probs=22.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+++|||+|..|+.+|..|++.|.
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~  238 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGR  238 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCC
Confidence            789999999999999999998874

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=90.06  E-value=0.26  Score=35.36  Aligned_cols=26  Identities=35%  Similarity=0.548  Sum_probs=23.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+|+|||+|-.|..+|..|++.|+
T Consensus        33 ~~~~VlIvGaGGlGs~va~~La~aGV   58 (340)
T 3rui_A           33 KNTKVLLLGAGTLGCYVSRALIAWGV   58 (340)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             hCCEEEEECCCHHHHHHHHHHHHcCC
Confidence            46899999999999999999999986

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=89.96  E-value=0.3  Score=35.83  Aligned_cols=26  Identities=27%  Similarity=0.497  Sum_probs=22.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....|+|+|+|.+|+.+|..+...|.
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa  214 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGA  214 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC
Confidence            35789999999999999999888774

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=89.94  E-value=0.27  Score=35.81  Aligned_cols=24  Identities=38%  Similarity=0.649  Sum_probs=22.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+|.|||.|..|+.+|..|+++|+
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~   26 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGA   26 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCC
Confidence            369999999999999999999885

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=89.87  E-value=0.22  Score=32.54  Aligned_cols=24  Identities=21%  Similarity=0.360  Sum_probs=21.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ..+++|||+|+.|+.+|..|++.|
T Consensus       154 ~~~v~vvG~g~~~~e~a~~l~~~~  177 (332)
T 3lzw_A          154 GRRVAILGGGDSAVDWALMLEPIA  177 (332)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTTB
T ss_pred             CCEEEEECCCHhHHHHHHHHHhhC
Confidence            478999999999999999998765

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=89.84  E-value=0.24  Score=36.20  Aligned_cols=21  Identities=29%  Similarity=0.612  Sum_probs=18.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHH
Q 035312           44 VPVLIVGAGPVGLVLSILLTK   64 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~   64 (68)
                      ..++|||||++|+-+|.+|++
T Consensus       218 ~~vvVvGgG~tGvE~A~~l~~  238 (502)
T 4g6h_A          218 LSIVVVGGGPTGVEAAGELQD  238 (502)
T ss_dssp             TEEEEECCSHHHHHHHHHHHH
T ss_pred             cceEEECCCcchhhhHHHHHH
Confidence            369999999999999988864

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=89.80  E-value=0.26  Score=34.44  Aligned_cols=23  Identities=26%  Similarity=0.095  Sum_probs=20.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .|.|||+|-.|.++|+.|..+++
T Consensus         2 KV~IiGaG~VG~~~a~~l~~~~~   24 (294)
T 2x0j_A            2 KLGFVGAGRVGSTSAFTCLLNLD   24 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCC
Confidence            48999999999999999987764

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=89.79  E-value=0.27  Score=34.87  Aligned_cols=25  Identities=40%  Similarity=0.749  Sum_probs=22.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHC-CC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKL-GI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~-G~   67 (68)
                      ..+++|||+|+.|+.+|..|++. |.
T Consensus       159 ~~~vvViGgG~~g~e~A~~l~~~~g~  184 (472)
T 3iwa_A          159 VSKAVIVGGGFIGLEMAVSLADMWGI  184 (472)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCC
Confidence            46899999999999999999887 63

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=89.78  E-value=0.32  Score=34.39  Aligned_cols=26  Identities=38%  Similarity=0.505  Sum_probs=22.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGIF   68 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~~   68 (68)
                      ..+|+|||+|..|-.-|..+++.|+.
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~   31 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFR   31 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCC
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCe
Confidence            35799999999999999999999863

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=89.73  E-value=0.31  Score=33.48  Aligned_cols=25  Identities=20%  Similarity=0.190  Sum_probs=22.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...++|+|+|.+|..+|..|.+.|.
T Consensus       141 ~~~vlVlGaGg~g~aia~~L~~~G~  165 (297)
T 2egg_A          141 GKRILVIGAGGGARGIYFSLLSTAA  165 (297)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTC
T ss_pred             CCEEEEECcHHHHHHHHHHHHHCCC
Confidence            4679999999999999999998885

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=89.62  E-value=0.27  Score=35.50  Aligned_cols=22  Identities=32%  Similarity=0.511  Sum_probs=19.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHH
Q 035312           43 VVPVLIVGAGPVGLVLSILLTK   64 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~   64 (68)
                      ..+|+|||+|+.|+-+|..|++
T Consensus       180 ~~~vvViGgG~iG~E~A~~l~~  201 (493)
T 1m6i_A          180 VKSITIIGGGFLGSELACALGR  201 (493)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHh
Confidence            4689999999999999999876

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=89.59  E-value=0.36  Score=34.31  Aligned_cols=26  Identities=23%  Similarity=0.335  Sum_probs=22.4

Q ss_pred             cccCEEEECC-CHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGA-GPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGa-G~aGl~~A~~L~~~G~   67 (68)
                      ....|+|||+ |..|.++|+.+..+|.
T Consensus         7 ~~~KV~ViGaaG~VG~~~a~~l~~~g~   33 (343)
T 3fi9_A            7 TEEKLTIVGAAGMIGSNMAQTAAMMRL   33 (343)
T ss_dssp             CSSEEEEETTTSHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhcCC
Confidence            3467999997 9999999999988874

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=89.58  E-value=0.53  Score=31.88  Aligned_cols=24  Identities=29%  Similarity=0.470  Sum_probs=21.9

Q ss_pred             cCEEEEC-CCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVG-AGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVG-aG~aGl~~A~~L~~~G~   67 (68)
                      ..|.||| .|..|.+.|..|++.|+
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~G~   46 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRASGY   46 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCC
Confidence            5799999 99999999999998875

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=89.58  E-value=0.34  Score=33.18  Aligned_cols=24  Identities=25%  Similarity=0.382  Sum_probs=22.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +.|+|+|+|..|..+++.+++.|+
T Consensus         2 K~I~ilGgg~~g~~~~~~Ak~~G~   25 (363)
T 4ffl_A            2 KTICLVGGKLQGFEAAYLSKKAGM   25 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC
Confidence            469999999999999999999986

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=89.56  E-value=0.32  Score=35.64  Aligned_cols=25  Identities=32%  Similarity=0.581  Sum_probs=23.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..++.|||.|..|+.+|..|+++|+
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~   32 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGH   32 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCC
Confidence            4789999999999999999999986

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=89.44  E-value=0.41  Score=32.57  Aligned_cols=24  Identities=33%  Similarity=0.466  Sum_probs=22.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+|.|||.|..|...|..|++.|+
T Consensus        22 ~~I~iIG~G~mG~~~A~~l~~~G~   45 (310)
T 3doj_A           22 MEVGFLGLGIMGKAMSMNLLKNGF   45 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC
Confidence            579999999999999999999885

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=89.40  E-value=0.34  Score=32.64  Aligned_cols=24  Identities=29%  Similarity=0.429  Sum_probs=21.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+|+|||+|-.|...|..|+++|.
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~   26 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLP   26 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCT
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCC
Confidence            479999999999999999998874

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=89.38  E-value=0.4  Score=34.21  Aligned_cols=26  Identities=27%  Similarity=0.585  Sum_probs=22.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+++|||+|+.|+.+|..|++.|.
T Consensus       190 ~~~~v~ViGgG~~g~e~A~~l~~~g~  215 (484)
T 3o0h_A          190 LPKSIVIVGGGYIGVEFANIFHGLGV  215 (484)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHcCC
Confidence            35789999999999999999998774

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=89.36  E-value=0.36  Score=32.40  Aligned_cols=25  Identities=24%  Similarity=0.343  Sum_probs=22.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...++|+|+|-+|..+|..|++.|.
T Consensus       119 ~k~vlViGaGg~g~a~a~~L~~~G~  143 (271)
T 1nyt_A          119 GLRILLIGAGGASRGVLLPLLSLDC  143 (271)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCC
Confidence            4679999999999999999998873

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=89.35  E-value=0.21  Score=34.75  Aligned_cols=26  Identities=31%  Similarity=0.439  Sum_probs=23.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....|+|||+|-.|...+..|.+.|.
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~Ga   37 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPTGC   37 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTC
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCC
Confidence            45789999999999999999988874

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=89.32  E-value=0.28  Score=35.38  Aligned_cols=23  Identities=22%  Similarity=0.325  Sum_probs=21.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      ..+++|||+|..|+-+|..|++.
T Consensus       191 ~~~vvViGgG~ig~E~A~~l~~~  213 (495)
T 2wpf_A          191 PRRVLTVGGGFISVEFAGIFNAY  213 (495)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhh
Confidence            46899999999999999999887

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=89.31  E-value=0.29  Score=35.26  Aligned_cols=23  Identities=17%  Similarity=0.299  Sum_probs=21.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      ..+++|||+|+.|+-+|..|++.
T Consensus       187 ~~~vvViGgG~ig~E~A~~l~~~  209 (490)
T 1fec_A          187 PKRALCVGGGYISIEFAGIFNAY  209 (490)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhh
Confidence            46899999999999999999887

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=89.30  E-value=0.42  Score=33.87  Aligned_cols=26  Identities=23%  Similarity=0.491  Sum_probs=22.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+++|||+|+.|+.+|..|++.|.
T Consensus       169 ~~~~v~ViGgG~~g~e~A~~l~~~g~  194 (463)
T 4dna_A          169 LPESILIAGGGYIAVEFANIFHGLGV  194 (463)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCC
Confidence            35789999999999999999998774

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=89.22  E-value=0.41  Score=30.91  Aligned_cols=25  Identities=20%  Similarity=0.312  Sum_probs=22.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|.|||+|-.|...|..|+++|+
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~g~   43 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIAGH   43 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC
Confidence            4579999999999999999999875

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=89.18  E-value=0.41  Score=33.91  Aligned_cols=26  Identities=23%  Similarity=0.427  Sum_probs=22.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....|+|||+|..|.++|+.|+.+|+
T Consensus        18 ~~~kV~ViGaG~vG~~~a~~l~~~~~   43 (331)
T 4aj2_A           18 PQNKITVVGVGAVGMACAISILMKDL   43 (331)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC
Confidence            44689999999999999999988775

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=89.15  E-value=0.32  Score=33.33  Aligned_cols=25  Identities=24%  Similarity=0.473  Sum_probs=22.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|.|||.|..|...|..|++.|+
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~~G~   55 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCEAGY   55 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHHTTC
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCC
Confidence            3579999999999999999999885

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=89.05  E-value=0.4  Score=33.63  Aligned_cols=25  Identities=28%  Similarity=0.476  Sum_probs=22.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...|+|+|+|..|+.+|..++..|.
T Consensus       166 ~~~V~ViGaG~iG~~~a~~l~~~Ga  190 (369)
T 2eez_A          166 PASVVILGGGTVGTNAAKIALGMGA  190 (369)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC
Confidence            4689999999999999999988874

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=88.98  E-value=0.3  Score=33.88  Aligned_cols=23  Identities=26%  Similarity=0.095  Sum_probs=20.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +|+|||+|..|.++|+.|+++|+
T Consensus         2 kI~ViGaG~vG~~la~~l~~~~~   24 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLNLD   24 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC
Confidence            48999999999999999988775

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=88.96  E-value=0.4  Score=33.20  Aligned_cols=23  Identities=43%  Similarity=0.577  Sum_probs=20.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .|+|||+|-.|.++|+.|..++.
T Consensus         2 KI~IiGaG~vG~~~a~~l~~~~~   24 (310)
T 2xxj_A            2 KVGIVGSGMVGSATAYALALLGV   24 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC
Confidence            58999999999999999988764

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=88.91  E-value=0.33  Score=32.60  Aligned_cols=23  Identities=43%  Similarity=0.564  Sum_probs=20.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +|.|||+|-.|...|..|+++|+
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~   24 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGN   24 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCC
Confidence            48999999999999999998875

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=88.87  E-value=0.46  Score=32.74  Aligned_cols=26  Identities=27%  Similarity=0.217  Sum_probs=23.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....++|+|+|-+|.+++..|++.|.
T Consensus       116 ~~k~vlvlGaGg~g~aia~~L~~~G~  141 (277)
T 3don_A          116 EDAYILILGAGGASKGIANELYKIVR  141 (277)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHTTCC
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC
Confidence            45789999999999999999999885

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=88.78  E-value=0.43  Score=34.07  Aligned_cols=27  Identities=30%  Similarity=0.518  Sum_probs=23.1

Q ss_pred             ccccCEEEECC-CHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGA-GPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGa-G~aGl~~A~~L~~~G~   67 (68)
                      +...+|+|+|| |..|-++|+.|++..+
T Consensus        22 ~~~vKVaViGAaG~IG~~la~~la~~~l   49 (345)
T 4h7p_A           22 MSAVKVAVTGAAGQIGYALVPLIARGAL   49 (345)
T ss_dssp             CCCEEEEEESTTSHHHHHHHHHHHHTTT
T ss_pred             CCCCEEEEECcCcHHHHHHHHHHHhccc
Confidence            45679999996 9999999999988654

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=88.75  E-value=0.43  Score=33.75  Aligned_cols=26  Identities=23%  Similarity=0.466  Sum_probs=22.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....|+|+|+|..|+.+|..++..|.
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga  192 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGA  192 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC
Confidence            35789999999999999999988774

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=88.71  E-value=0.35  Score=35.19  Aligned_cols=26  Identities=27%  Similarity=0.437  Sum_probs=22.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....|+|+|+|.+|+.+|..+...|.
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa  208 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGA  208 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCC
Confidence            35789999999999999998887764

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=88.66  E-value=0.33  Score=34.05  Aligned_cols=23  Identities=26%  Similarity=0.531  Sum_probs=20.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .|+|||+|..|.++|+.|+++|+
T Consensus         2 kv~ViGaG~vG~~~a~~l~~~~~   24 (314)
T 3nep_X            2 KVTVIGAGNVGATVAECVARQDV   24 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC
Confidence            48999999999999999988775

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=88.65  E-value=0.3  Score=35.00  Aligned_cols=23  Identities=35%  Similarity=0.381  Sum_probs=21.2

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +|.|||+|..|+..|..|++.|+
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~   24 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGH   24 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC
Confidence            48999999999999999999885

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=88.55  E-value=0.39  Score=33.26  Aligned_cols=23  Identities=35%  Similarity=0.645  Sum_probs=20.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .|+|||+|..|...|+.|+.+++
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l   23 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGY   23 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCC
Confidence            48999999999999999887664

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=88.53  E-value=0.36  Score=34.07  Aligned_cols=26  Identities=27%  Similarity=0.358  Sum_probs=23.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+|+|||+|-.|...|..|++.|+
T Consensus        35 ~~~~VlivG~GGlG~~ia~~La~~Gv   60 (346)
T 1y8q_A           35 RASRVLLVGLKGLGAEIAKNLILAGV   60 (346)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCC
Confidence            35799999999999999999999886

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=88.43  E-value=0.33  Score=35.24  Aligned_cols=23  Identities=17%  Similarity=0.180  Sum_probs=20.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      .++|+|||+|-+|.-.+..|+++
T Consensus       246 gKrV~VVG~G~SA~ei~~~L~~~  268 (501)
T 4b63_A          246 PYNIAVLGSGQSAAEIFHDLQKR  268 (501)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH
T ss_pred             CcEEEEECCcHHHHHHHHHHHhc
Confidence            46799999999999999988764

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=88.42  E-value=0.44  Score=32.74  Aligned_cols=22  Identities=27%  Similarity=0.489  Sum_probs=19.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      +|+|||+|..|...|..|++++
T Consensus         2 kI~VIGaG~vG~~la~~la~~~   23 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQ   23 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT
T ss_pred             EEEEECCCHHHHHHHHHHHhCC
Confidence            5899999999999999998863

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=88.28  E-value=0.39  Score=33.34  Aligned_cols=24  Identities=25%  Similarity=0.612  Sum_probs=21.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..|+|||+|..|...|+.|..+|+
T Consensus        15 ~kV~ViGaG~vG~~~a~~l~~~g~   38 (303)
T 2i6t_A           15 NKITVVGGGELGIACTLAISAKGI   38 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCC
Confidence            679999999999999998888775

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=88.17  E-value=0.35  Score=34.81  Aligned_cols=23  Identities=22%  Similarity=0.336  Sum_probs=20.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      ..+|+|||+|.+|+-+|..|++.
T Consensus       147 ~~~vvVIG~G~~g~e~A~~L~~~  169 (456)
T 1lqt_A          147 GARAVVIGNGNVALDVARILLTD  169 (456)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhh
Confidence            46899999999999999998863

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=88.11  E-value=0.61  Score=30.12  Aligned_cols=25  Identities=28%  Similarity=0.324  Sum_probs=21.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|.|||+|-.|...|..|.+.|+
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~   52 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGF   52 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCC
Confidence            3579999999999999999988875

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=88.09  E-value=0.41  Score=31.08  Aligned_cols=24  Identities=33%  Similarity=0.303  Sum_probs=21.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..|+|+|+|..|-..+..|.++|+
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~   29 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGW   29 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTC
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCC
Confidence            579999999999999999988875

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=88.02  E-value=0.53  Score=32.34  Aligned_cols=26  Identities=35%  Similarity=0.508  Sum_probs=23.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....++|+|+|-+|-+++..|++.|.
T Consensus       126 ~~k~vlVlGaGG~g~aia~~L~~~G~  151 (283)
T 3jyo_A          126 KLDSVVQVGAGGVGNAVAYALVTHGV  151 (283)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC
Confidence            35789999999999999999999885

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=87.99  E-value=0.58  Score=29.74  Aligned_cols=26  Identities=38%  Similarity=0.401  Sum_probs=22.5

Q ss_pred             cccCEEEECC-CHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGA-GPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGa-G~aGl~~A~~L~~~G~   67 (68)
                      ....|+|+|+ |..|..++..|.++|.
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~   46 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGH   46 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCC
Confidence            3567999998 9999999999999885

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=87.97  E-value=0.39  Score=33.09  Aligned_cols=23  Identities=35%  Similarity=0.434  Sum_probs=20.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +|+|||+|-.|...|..|+++|+
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~   24 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGF   24 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC
Confidence            58999999999999999988875

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=87.94  E-value=0.52  Score=31.12  Aligned_cols=23  Identities=39%  Similarity=0.538  Sum_probs=21.0

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .|.|||+|..|...|..|++.|+
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~g~   25 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRSGF   25 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTC
T ss_pred             EEEEEecCHHHHHHHHHHHhcCC
Confidence            58999999999999999998875

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=87.92  E-value=0.46  Score=30.74  Aligned_cols=25  Identities=32%  Similarity=0.484  Sum_probs=22.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|.|||+|-.|...|..|.++|+
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~   47 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQI   47 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC
Confidence            3589999999999999999998885

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=87.75  E-value=0.58  Score=30.75  Aligned_cols=26  Identities=27%  Similarity=0.484  Sum_probs=22.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+|.|||+|-.|...|..|+++|+
T Consensus        18 ~~~kIgiIG~G~mG~alA~~L~~~G~   43 (245)
T 3dtt_A           18 QGMKIAVLGTGTVGRTMAGALADLGH   43 (245)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC
Confidence            45789999999999999999999885

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=87.74  E-value=0.46  Score=34.84  Aligned_cols=26  Identities=35%  Similarity=0.469  Sum_probs=23.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+|+|||+|-.|..+|..|++.|+
T Consensus        39 ~~~~VlvvG~GGlGs~va~~La~aGv   64 (434)
T 1tt5_B           39 DTCKVLVIGAGGLGCELLKNLALSGF   64 (434)
T ss_dssp             HTCCEEEECSSTHHHHHHHHHHHTTC
T ss_pred             cCCEEEEECcCHHHHHHHHHHHHcCC
Confidence            45899999999999999999999986

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=87.74  E-value=0.43  Score=34.69  Aligned_cols=24  Identities=29%  Similarity=0.578  Sum_probs=22.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..|.|||+|..|...|..|+++|+
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~   61 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGI   61 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC
Confidence            569999999999999999999885

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=87.71  E-value=0.64  Score=32.78  Aligned_cols=25  Identities=36%  Similarity=0.667  Sum_probs=22.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|.|||+|--|.+.|..|+++|+
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~   53 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQ   53 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTC
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCC
Confidence            3589999999999999999999885

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=87.67  E-value=0.58  Score=32.03  Aligned_cols=26  Identities=23%  Similarity=0.179  Sum_probs=23.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....++|+|+|-+|.+++..|++.|.
T Consensus       119 ~~k~~lvlGaGg~~~aia~~L~~~G~  144 (272)
T 3pwz_A          119 RNRRVLLLGAGGAVRGALLPFLQAGP  144 (272)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTCC
T ss_pred             cCCEEEEECccHHHHHHHHHHHHcCC
Confidence            45789999999999999999999885

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=87.55  E-value=0.57  Score=31.95  Aligned_cols=26  Identities=27%  Similarity=0.475  Sum_probs=22.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+.+|.|||+|-.|...|..|+++|+
T Consensus        13 ~~~kI~iIG~G~mG~ala~~L~~~G~   38 (335)
T 1z82_A           13 MEMRFFVLGAGSWGTVFAQMLHENGE   38 (335)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             cCCcEEEECcCHHHHHHHHHHHhCCC
Confidence            34689999999999999999999885

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=87.54  E-value=0.58  Score=31.54  Aligned_cols=25  Identities=28%  Similarity=0.349  Sum_probs=22.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|.|||.|..|...|..|++.|+
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~   31 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGL   31 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC
Confidence            3579999999999999999999885

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=87.41  E-value=0.59  Score=32.84  Aligned_cols=26  Identities=23%  Similarity=0.253  Sum_probs=23.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....++|+|+|-+|-++|..|++.|.
T Consensus       153 ~gk~~lVlGaGG~g~aia~~L~~~Ga  178 (315)
T 3tnl_A          153 IGKKMTICGAGGAATAICIQAALDGV  178 (315)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             cCCEEEEECCChHHHHHHHHHHHCCC
Confidence            35789999999999999999999885

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=87.39  E-value=0.45  Score=37.76  Aligned_cols=24  Identities=21%  Similarity=0.335  Sum_probs=21.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+|+|||+|..|+-+|..+++.|.
T Consensus       333 ~~VvVIGgG~~g~e~A~~~~~~G~  356 (1025)
T 1gte_A          333 GAVIVLGAGDTAFDCATSALRCGA  356 (1025)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTC
T ss_pred             CcEEEECCChHHHHHHHHHHHcCC
Confidence            489999999999999999998873

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=87.38  E-value=0.59  Score=32.79  Aligned_cols=26  Identities=19%  Similarity=0.281  Sum_probs=23.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....++|+|+|-+|-++++.|++.|.
T Consensus       147 ~gk~~lVlGAGGaaraia~~L~~~G~  172 (312)
T 3t4e_A          147 RGKTMVLLGAGGAATAIGAQAAIEGI  172 (312)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCC
Confidence            35789999999999999999999885

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=87.28  E-value=0.43  Score=32.49  Aligned_cols=22  Identities=32%  Similarity=0.448  Sum_probs=20.4

Q ss_pred             CEEEECCCHHHHHHHHHHHHCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      .|+|||+|-.|...|..|+++|
T Consensus         3 kI~VIGaG~~G~~la~~L~~~g   24 (309)
T 1hyh_A            3 KIGIIGLGNVGAAVAHGLIAQG   24 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHT
T ss_pred             EEEEECCCHHHHHHHHHHHhCC
Confidence            5899999999999999998887

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=87.27  E-value=0.55  Score=34.14  Aligned_cols=26  Identities=35%  Similarity=0.340  Sum_probs=22.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....|+|||+|.+|...+..|.+.|.
T Consensus        11 ~~~~vlVvGgG~va~~k~~~L~~~ga   36 (457)
T 1pjq_A           11 RDRDCLIVGGGDVAERKARLLLEAGA   36 (457)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTB
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcC
Confidence            35789999999999999999988874

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=87.24  E-value=0.72  Score=30.72  Aligned_cols=27  Identities=26%  Similarity=0.400  Sum_probs=21.5

Q ss_pred             ccccCEEEECC-CHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGA-GPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGa-G~aGl~~A~~L~~~G~   67 (68)
                      .....|+|+|| |..|..++..|.++|+
T Consensus        17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~   44 (347)
T 4id9_A           17 RGSHMILVTGSAGRVGRAVVAALRTQGR   44 (347)
T ss_dssp             ----CEEEETTTSHHHHHHHHHHHHTTC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCC
Confidence            34578999999 9999999999999885

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=87.18  E-value=1.1  Score=33.25  Aligned_cols=24  Identities=33%  Similarity=0.585  Sum_probs=22.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..|.|||+|.-|...|..|+++|+
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~   78 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGI   78 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC
Confidence            579999999999999999999886

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=87.16  E-value=0.5  Score=33.64  Aligned_cols=26  Identities=35%  Similarity=0.520  Sum_probs=22.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....|+|||+|..|..++..|...|.
T Consensus       166 ~g~~VlIiGaG~iG~~~a~~l~~~G~  191 (404)
T 1gpj_A          166 HDKTVLVVGAGEMGKTVAKSLVDRGV  191 (404)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCC
T ss_pred             cCCEEEEEChHHHHHHHHHHHHHCCC
Confidence            35689999999999999999988775

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=87.09  E-value=0.59  Score=32.26  Aligned_cols=24  Identities=38%  Similarity=0.437  Sum_probs=22.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ..+++|+|+|-+|-++++.|++.|
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G  141 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQG  141 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC
Confidence            578999999999999999999887

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=87.08  E-value=0.56  Score=31.55  Aligned_cols=25  Identities=28%  Similarity=0.395  Sum_probs=22.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|-+|-+.|..|.+.|.
T Consensus       129 ~~~v~iiGaG~~g~aia~~L~~~g~  153 (275)
T 2hk9_A          129 EKSILVLGAGGASRAVIYALVKEGA  153 (275)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CCEEEEECchHHHHHHHHHHHHcCC
Confidence            4679999999999999999988774

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=86.84  E-value=0.65  Score=30.52  Aligned_cols=23  Identities=30%  Similarity=0.394  Sum_probs=20.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +|.|||+|..|...|..|.+.|+
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~   24 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGH   24 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCC
Confidence            48999999999999999988874

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=86.83  E-value=0.53  Score=36.43  Aligned_cols=25  Identities=36%  Similarity=0.575  Sum_probs=23.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|-.|..+|..|++.|+
T Consensus       326 ~arVLIVGaGGLGs~vA~~La~aGV  350 (615)
T 4gsl_A          326 NTKVLLLGAGTLGCYVSRALIAWGV  350 (615)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC
Confidence            4689999999999999999999986

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=86.83  E-value=0.64  Score=30.96  Aligned_cols=24  Identities=25%  Similarity=0.329  Sum_probs=21.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+|.|||.|..|...|..|++.|+
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~   25 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGC   25 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC
Confidence            369999999999999999999885

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=86.73  E-value=0.44  Score=35.33  Aligned_cols=24  Identities=21%  Similarity=0.412  Sum_probs=22.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHHC-CC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKL-GI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~-G~   67 (68)
                      .+|.|||.|..|+.+|..|+++ |+
T Consensus        19 mkIaVIGlG~mG~~lA~~la~~~G~   43 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFADAPCF   43 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHSTTC
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCC
Confidence            5799999999999999999999 86

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=86.61  E-value=0.51  Score=36.37  Aligned_cols=25  Identities=36%  Similarity=0.575  Sum_probs=23.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|-.|..+|..|++.|+
T Consensus       327 ~~kVLIVGaGGLGs~va~~La~aGV  351 (598)
T 3vh1_A          327 NTKVLLLGAGTLGCYVSRALIAWGV  351 (598)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC
Confidence            4789999999999999999999986

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=86.59  E-value=0.8  Score=33.01  Aligned_cols=25  Identities=32%  Similarity=0.494  Sum_probs=22.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +.+|+|+|.|..|...|..|.++|+
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~   28 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGV   28 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC
Confidence            3579999999999999999999886

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=86.58  E-value=1.1  Score=30.45  Aligned_cols=25  Identities=28%  Similarity=0.533  Sum_probs=22.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|.|||.|..|...|..|.+.|+
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~G~   33 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQGK   33 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC
Confidence            4689999999999999999999886

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=86.57  E-value=0.45  Score=32.99  Aligned_cols=24  Identities=21%  Similarity=0.343  Sum_probs=21.5

Q ss_pred             cCEEEECC-CHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGA-GPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGa-G~aGl~~A~~L~~~G~   67 (68)
                      ..|+|+|+ |..|..+++.|..+|+
T Consensus         6 ~KI~ViGaaG~VG~~l~~~L~~~~~   30 (329)
T 1b8p_A            6 MRVAVTGAAGQICYSLLFRIANGDM   30 (329)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTT
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCC
Confidence            57999998 9999999999988774

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=86.54  E-value=0.74  Score=31.15  Aligned_cols=26  Identities=27%  Similarity=0.456  Sum_probs=22.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....|.|||.|..|..+|..|+..|.
T Consensus       154 ~g~~v~IiG~G~iG~~~a~~l~~~G~  179 (293)
T 3d4o_A          154 HGANVAVLGLGRVGMSVARKFAALGA  179 (293)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCC
Confidence            35789999999999999999988774

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=86.51  E-value=0.43  Score=32.10  Aligned_cols=24  Identities=29%  Similarity=0.254  Sum_probs=21.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ...++|+|+|-+|..+|..|++.|
T Consensus       119 ~~~vlvlGaGg~g~a~a~~L~~~G  142 (272)
T 1p77_A          119 NQHVLILGAGGATKGVLLPLLQAQ  142 (272)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTT
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCC
Confidence            467999999999999999999887

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=86.39  E-value=0.45  Score=32.96  Aligned_cols=23  Identities=39%  Similarity=0.635  Sum_probs=20.5

Q ss_pred             CEEEECC-CHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGA-GPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGa-G~aGl~~A~~L~~~G~   67 (68)
                      +|+|||+ |..|..+++.|+.+|+
T Consensus         2 KI~IiGa~G~VG~~la~~L~~~~~   25 (314)
T 1mld_A            2 KVAVLGASGGIGQPLSLLLKNSPL   25 (314)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTT
T ss_pred             EEEEECCCChHHHHHHHHHHhCCC
Confidence            5899998 9999999999998773

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=86.31  E-value=0.84  Score=31.45  Aligned_cols=24  Identities=38%  Similarity=0.495  Sum_probs=22.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..|.|||.|..|-+.|..|.+.|+
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~   57 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGF   57 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTC
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCC
Confidence            579999999999999999999885

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=86.13  E-value=0.72  Score=31.72  Aligned_cols=26  Identities=19%  Similarity=0.155  Sum_probs=23.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....++|+|+|-+|-..+..|++.|.
T Consensus       125 ~~k~vlvlGaGg~g~aia~~L~~~G~  150 (281)
T 3o8q_A          125 KGATILLIGAGGAARGVLKPLLDQQP  150 (281)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTCC
T ss_pred             cCCEEEEECchHHHHHHHHHHHhcCC
Confidence            45789999999999999999999885

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=86.08  E-value=0.69  Score=31.60  Aligned_cols=25  Identities=16%  Similarity=0.329  Sum_probs=22.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|+|+|-++-++++.|.+.|.
T Consensus       119 ~~~vlvlGaGgaarav~~~L~~~G~  143 (271)
T 1npy_A          119 NAKVIVHGSGGMAKAVVAAFKNSGF  143 (271)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHHTTC
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCC
Confidence            4689999999999999999999885

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=86.03  E-value=0.6  Score=32.33  Aligned_cols=26  Identities=12%  Similarity=0.052  Sum_probs=23.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+++|+|+|-+|-++++.|.+.|.
T Consensus       121 ~~k~vlvlGaGGaaraia~~L~~~G~  146 (282)
T 3fbt_A          121 KNNICVVLGSGGAARAVLQYLKDNFA  146 (282)
T ss_dssp             TTSEEEEECSSTTHHHHHHHHHHTTC
T ss_pred             cCCEEEEECCcHHHHHHHHHHHHcCC
Confidence            35789999999999999999999885

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=85.98  E-value=0.73  Score=28.98  Aligned_cols=23  Identities=35%  Similarity=0.589  Sum_probs=20.6

Q ss_pred             CEEEEC-CCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVG-AGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVG-aG~aGl~~A~~L~~~G~   67 (68)
                      +|+||| +|-.|...|..|.++|+
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~   25 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGH   25 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTC
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCC
Confidence            489999 99999999999988874

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=85.96  E-value=0.79  Score=33.60  Aligned_cols=27  Identities=19%  Similarity=0.257  Sum_probs=23.2

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +.+.+|.|||.|.-|...|..|+++|+
T Consensus        13 ~~~~~IgvIGlG~MG~~lA~~La~~G~   39 (480)
T 2zyd_A           13 MSKQQIGVVGMAVMGRNLALNIESRGY   39 (480)
T ss_dssp             --CBSEEEECCSHHHHHHHHHHHTTTC
T ss_pred             cCCCeEEEEccHHHHHHHHHHHHhCCC
Confidence            345789999999999999999999886

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=85.91  E-value=0.72  Score=32.00  Aligned_cols=25  Identities=24%  Similarity=0.408  Sum_probs=21.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++.|.|||+|.-|-..|..|+ .|+
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~la-aG~   35 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIA-SKH   35 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-TTS
T ss_pred             CCCeEEEEeeCHHHHHHHHHHH-cCC
Confidence            4678999999999999999998 886

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=85.89  E-value=1  Score=27.38  Aligned_cols=24  Identities=29%  Similarity=0.403  Sum_probs=21.4

Q ss_pred             cCEEEECC-CHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGA-GPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGa-G~aGl~~A~~L~~~G~   67 (68)
                      ..|+|+|+ |..|..++..|.++|.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~   28 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGY   28 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCC
Confidence            46999999 9999999999998874

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=85.81  E-value=0.8  Score=31.40  Aligned_cols=23  Identities=35%  Similarity=0.443  Sum_probs=20.5

Q ss_pred             CEEEEC-CCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVG-AGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVG-aG~aGl~~A~~L~~~G~   67 (68)
                      +|+|+| +|..|..+++.|..+|.
T Consensus         2 KI~IiGAaG~vG~~l~~~L~~~~~   25 (303)
T 1o6z_A            2 KVSVVGAAGTVGAAAGYNIALRDI   25 (303)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC
T ss_pred             EEEEECCCChHHHHHHHHHHhCCC
Confidence            589999 99999999999988764

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=85.74  E-value=0.87  Score=33.65  Aligned_cols=26  Identities=27%  Similarity=0.562  Sum_probs=23.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+|+|+|+|-+|.+++..|.+.|.
T Consensus       185 ~~~rvlvlGAGgAg~aia~~L~~~G~  210 (439)
T 2dvm_A          185 SEITLALFGAGAAGFATLRILTEAGV  210 (439)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTC
T ss_pred             cCCEEEEECccHHHHHHHHHHHHcCC
Confidence            35789999999999999999999885

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=85.72  E-value=0.82  Score=29.78  Aligned_cols=23  Identities=30%  Similarity=0.398  Sum_probs=20.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +|.|||+|-.|...|..|++.|+
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~   24 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGV   24 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTC
T ss_pred             eEEEEechHHHHHHHHHHHHCCC
Confidence            48999999999999999998875

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=85.70  E-value=0.96  Score=30.37  Aligned_cols=24  Identities=25%  Similarity=0.304  Sum_probs=21.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+|.|||+|..|...|..|.+.|+
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~   54 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGH   54 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCC
Confidence            579999999999999999988875

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=85.70  E-value=0.33  Score=34.25  Aligned_cols=24  Identities=25%  Similarity=0.437  Sum_probs=21.6

Q ss_pred             cCEEEEC-CCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVG-AGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVG-aG~aGl~~A~~L~~~G~   67 (68)
                      .+|+|+| +|..|.++|+.|...|+
T Consensus         4 ~kV~V~GaaG~VG~~la~~L~~~~~   28 (333)
T 5mdh_A            4 IRVLVTGAAGQIAYSLLYSIGNGSV   28 (333)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTT
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCC
Confidence            5799999 69999999999998875

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=85.61  E-value=0.61  Score=30.94  Aligned_cols=21  Identities=24%  Similarity=0.352  Sum_probs=19.6

Q ss_pred             CEEEECCCHHHHHHHHHHHHC
Q 035312           45 PVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      +|.|||+|..|...|..|++.
T Consensus        10 ~I~iiG~G~mG~~~a~~L~~~   30 (317)
T 2qyt_A           10 KIAVFGLGGVGGYYGAMLALR   30 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHhC
Confidence            699999999999999999887

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=85.47  E-value=0.9  Score=30.76  Aligned_cols=26  Identities=23%  Similarity=0.443  Sum_probs=22.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....|.|||+|..|..+|..|...|.
T Consensus       156 ~g~~v~IiG~G~iG~~~a~~l~~~G~  181 (300)
T 2rir_A          156 HGSQVAVLGLGRTGMTIARTFAALGA  181 (300)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCCC
Confidence            35689999999999999999988774

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=85.46  E-value=0.85  Score=31.54  Aligned_cols=25  Identities=32%  Similarity=0.357  Sum_probs=20.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...|+|+|+|+.|+.++..++..|.
T Consensus       194 g~~VlV~GaG~vG~~a~q~a~~~Ga  218 (378)
T 3uko_A          194 GSNVAIFGLGTVGLAVAEGAKTAGA  218 (378)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC
Confidence            4679999999999998887777664

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=85.37  E-value=0.88  Score=29.53  Aligned_cols=23  Identities=17%  Similarity=0.326  Sum_probs=20.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      .+|.|||+|-.|...|..|.++|
T Consensus         5 m~i~iiG~G~mG~~~a~~l~~~g   27 (262)
T 2rcy_A            5 IKLGFMGLGQMGSALAHGIANAN   27 (262)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCC
Confidence            47999999999999999998877

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=85.36  E-value=0.94  Score=30.34  Aligned_cols=26  Identities=27%  Similarity=0.457  Sum_probs=22.8

Q ss_pred             cccCEEEEC-CCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVG-AGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVG-aG~aGl~~A~~L~~~G~   67 (68)
                      ....++|+| +|.+|...+..|+++|.
T Consensus       118 ~gk~vlVtGaaGGiG~aia~~L~~~G~  144 (287)
T 1lu9_A          118 KGKKAVVLAGTGPVGMRSAALLAGEGA  144 (287)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcC
Confidence            346799999 89999999999999885

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=85.29  E-value=0.47  Score=37.46  Aligned_cols=24  Identities=13%  Similarity=0.057  Sum_probs=22.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+|+|||+|+.|+-+|..|++.|.
T Consensus       285 k~vvViGgG~~g~E~A~~L~~~G~  308 (965)
T 2gag_A          285 ARIAVATTNDSAYELVRELAATGG  308 (965)
T ss_dssp             SSEEEEESSTTHHHHHHHHGGGTC
T ss_pred             CeEEEEcCCHHHHHHHHHHHHcCC
Confidence            689999999999999999998875

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=85.21  E-value=1  Score=30.39  Aligned_cols=23  Identities=35%  Similarity=0.676  Sum_probs=21.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++|+|+|-+|-+.+..|.+.|.
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~G~  132 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQMGV  132 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC
T ss_pred             eEEEECcHHHHHHHHHHHHHcCC
Confidence            89999999999999999999885

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=85.13  E-value=0.93  Score=31.43  Aligned_cols=25  Identities=28%  Similarity=0.344  Sum_probs=22.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...|.|||+|..|-+.|..|++.|+
T Consensus        16 ~~~I~IIG~G~mG~alA~~L~~~G~   40 (338)
T 1np3_A           16 GKKVAIIGYGSQGHAHACNLKDSGV   40 (338)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECchHHHHHHHHHHHHCcC
Confidence            3579999999999999999998875

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=85.12  E-value=0.92  Score=31.48  Aligned_cols=26  Identities=19%  Similarity=0.473  Sum_probs=23.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....|+|+|+|..|..++..+++.|+
T Consensus        13 ~~k~IlIlG~G~~g~~la~aa~~~G~   38 (389)
T 3q2o_A           13 PGKTIGIIGGGQLGRMMALAAKEMGY   38 (389)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC
Confidence            34689999999999999999999886

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=85.12  E-value=1.1  Score=30.17  Aligned_cols=25  Identities=16%  Similarity=0.280  Sum_probs=22.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|.|||+|-.|-+.|..|.++|+
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~   27 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGY   27 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTC
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCC
Confidence            3579999999999999999998875

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=85.03  E-value=0.91  Score=29.68  Aligned_cols=24  Identities=29%  Similarity=0.612  Sum_probs=21.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+|.|||+|-.|...|..|++.|+
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~g~   34 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRKGF   34 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCC
Confidence            479999999999999999988775

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=84.94  E-value=1  Score=29.73  Aligned_cols=23  Identities=35%  Similarity=0.741  Sum_probs=21.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +++|||+|-.|...|..|.+.|.
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~  140 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGL  140 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTC
T ss_pred             eEEEECCcHHHHHHHHHHHHCCC
Confidence            89999999999999999988874

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=84.93  E-value=1  Score=27.83  Aligned_cols=23  Identities=26%  Similarity=0.286  Sum_probs=20.5

Q ss_pred             CEEEECC-CHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGA-GPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGa-G~aGl~~A~~L~~~G~   67 (68)
                      .|+|+|+ |..|..++..|.++|+
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~   25 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGH   25 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCC
Confidence            4899996 9999999999999885

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=84.88  E-value=0.67  Score=30.85  Aligned_cols=23  Identities=22%  Similarity=0.320  Sum_probs=21.3

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +|.|||.|..|...|..|++.|+
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~   25 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGF   25 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTC
T ss_pred             eEEEEccCHHHHHHHHHHHHCCC
Confidence            69999999999999999998885

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=84.82  E-value=0.94  Score=29.72  Aligned_cols=23  Identities=39%  Similarity=0.560  Sum_probs=21.0

Q ss_pred             CEEEECC-CHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGA-GPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGa-G~aGl~~A~~L~~~G~   67 (68)
                      +|+|.|| |..|-.++..|.++|+
T Consensus         2 kILVTGatGfIG~~L~~~L~~~G~   25 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNARGH   25 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCC
Confidence            4899998 9999999999999886

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=84.79  E-value=0.91  Score=30.69  Aligned_cols=24  Identities=21%  Similarity=0.083  Sum_probs=19.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ...|+|+|+|..|+.++..+++.+
T Consensus       164 g~~VlV~GaG~~g~~a~~~a~~~~  187 (348)
T 4eez_A          164 GDWQVIFGAGGLGNLAIQYAKNVF  187 (348)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTS
T ss_pred             CCEEEEEcCCCccHHHHHHHHHhC
Confidence            357999999999999988887653

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=84.79  E-value=1  Score=33.15  Aligned_cols=24  Identities=21%  Similarity=0.419  Sum_probs=22.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..|.|||+|.-|...|..|+++|+
T Consensus         6 ~kVgVIGaG~MG~~IA~~la~aG~   29 (483)
T 3mog_A            6 QTVAVIGSGTMGAGIAEVAASHGH   29 (483)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCC
Confidence            579999999999999999999886

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=84.71  E-value=0.59  Score=33.27  Aligned_cols=22  Identities=36%  Similarity=0.603  Sum_probs=19.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +|.|||.|-.|+..|..|++ |+
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G~   23 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-QN   23 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TS
T ss_pred             EEEEECCCHHHHHHHHHHhC-CC
Confidence            48999999999999999987 74

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=84.67  E-value=1.1  Score=27.80  Aligned_cols=23  Identities=22%  Similarity=0.397  Sum_probs=20.7

Q ss_pred             CEEEECC-CHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGA-GPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGa-G~aGl~~A~~L~~~G~   67 (68)
                      .|+|+|+ |..|..++..|.++|.
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~   25 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGH   25 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCC
Confidence            3899998 9999999999998885

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=84.65  E-value=0.52  Score=32.92  Aligned_cols=23  Identities=30%  Similarity=0.341  Sum_probs=20.2

Q ss_pred             CEEEECCCHHHHHHHHHHHH-CCC
Q 035312           45 PVLIVGAGPVGLVLSILLTK-LGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~-~G~   67 (68)
                      +|+|||+|-.|...|..|++ +|+
T Consensus         4 kI~ViGaG~~G~~~a~~La~~~G~   27 (404)
T 3c7a_A            4 KVCVCGGGNGAHTLSGLAASRDGV   27 (404)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSTTE
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCC
Confidence            69999999999999999987 464

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=84.64  E-value=0.78  Score=33.65  Aligned_cols=26  Identities=31%  Similarity=0.549  Sum_probs=22.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+.+|+|+|+|-+|..+|..|...|.
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~~G~  216 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLDLGV  216 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhCCC
Confidence            56799999999999999999887764

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=84.63  E-value=0.71  Score=30.56  Aligned_cols=24  Identities=33%  Similarity=0.394  Sum_probs=21.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+|.|||+|..|...|..|.+.|+
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~   29 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGY   29 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC
T ss_pred             ceEEEECchHHHHHHHHHHHhCCC
Confidence            469999999999999999988875

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=84.62  E-value=0.66  Score=31.31  Aligned_cols=25  Identities=16%  Similarity=0.223  Sum_probs=22.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|.|||.|..|...|..|+++|+
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~   39 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPG   39 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCC
Confidence            3589999999999999999999886

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=84.55  E-value=0.34  Score=31.26  Aligned_cols=24  Identities=21%  Similarity=-0.011  Sum_probs=20.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ..+|+|+|+|..|...|..|.+.|
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g   32 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSE   32 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSE
T ss_pred             CCEEEEECCChHHHHHHHHHHhCC
Confidence            457999999999999999887765

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=84.48  E-value=0.68  Score=33.70  Aligned_cols=25  Identities=24%  Similarity=0.361  Sum_probs=21.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ..++|+|||+|.+|+-.|..|++.+
T Consensus       185 ~gk~V~VIG~G~sg~e~a~~l~~~~  209 (542)
T 1w4x_A          185 SGQRVGVIGTGSSGIQVSPQIAKQA  209 (542)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHHB
T ss_pred             CCCEEEEECCCccHHHHHHHHhhcC
Confidence            3478999999999999999988754

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=84.41  E-value=0.53  Score=32.01  Aligned_cols=23  Identities=26%  Similarity=0.351  Sum_probs=20.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      .+|.|||+|-.|...|..|+++|
T Consensus         9 mkI~iIG~G~mG~~~a~~l~~~g   31 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVGGNA   31 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhcC
Confidence            47999999999999999998876

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=84.40  E-value=1.1  Score=30.51  Aligned_cols=25  Identities=36%  Similarity=0.521  Sum_probs=20.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...|+|+|+|+.|+.++..++..|.
T Consensus       167 g~~VlV~GaG~vG~~a~qla~~~Ga  191 (352)
T 3fpc_A          167 GDTVCVIGIGPVGLMSVAGANHLGA  191 (352)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC
Confidence            4579999999999998887776664

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=84.38  E-value=0.68  Score=31.25  Aligned_cols=24  Identities=25%  Similarity=0.281  Sum_probs=21.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ...++|+|+|-+|.+.|..|++.|
T Consensus       128 ~k~vlV~GaGgiG~aia~~L~~~G  151 (287)
T 1nvt_A          128 DKNIVIYGAGGAARAVAFELAKDN  151 (287)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSSS
T ss_pred             CCEEEEECchHHHHHHHHHHHHCC
Confidence            467999999999999999998876

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=84.35  E-value=1.1  Score=29.14  Aligned_cols=24  Identities=17%  Similarity=0.310  Sum_probs=21.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+|.|||+|-.|...|..|.++|+
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~   26 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNI   26 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTS
T ss_pred             CeEEEECccHHHHHHHHHHHhCCC
Confidence            469999999999999999999885

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=84.32  E-value=0.89  Score=30.93  Aligned_cols=23  Identities=35%  Similarity=0.567  Sum_probs=20.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+|+|||+|-.|...|..|+ +|.
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~   25 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYH   25 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTS
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCC
Confidence            46999999999999999998 764

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=84.26  E-value=0.77  Score=33.71  Aligned_cols=23  Identities=30%  Similarity=0.538  Sum_probs=20.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+|.|||.|..|+..|..|++ |+
T Consensus        37 mkIaVIGlG~mG~~lA~~La~-G~   59 (432)
T 3pid_A           37 MKITISGTGYVGLSNGVLIAQ-NH   59 (432)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT-TS
T ss_pred             CEEEEECcCHHHHHHHHHHHc-CC
Confidence            479999999999999999987 74

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=84.23  E-value=1.1  Score=30.50  Aligned_cols=25  Identities=40%  Similarity=0.550  Sum_probs=21.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...|+|+|+|..|+.++..++..|.
T Consensus       168 g~~VlV~GaG~vG~~~~q~a~~~Ga  192 (348)
T 2d8a_A          168 GKSVLITGAGPLGLLGIAVAKASGA  192 (348)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC
Confidence            3579999999999999888887774

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=84.20  E-value=0.98  Score=31.14  Aligned_cols=24  Identities=29%  Similarity=0.289  Sum_probs=20.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..|+|+|+|+.|+.++..++..|.
T Consensus       197 ~~VlV~GaG~vG~~aiqlak~~Ga  220 (376)
T 1e3i_A          197 STCAVFGLGCVGLSAIIGCKIAGA  220 (376)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCC
Confidence            579999999999999887777664

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=84.19  E-value=0.45  Score=32.75  Aligned_cols=23  Identities=26%  Similarity=0.525  Sum_probs=20.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +|.|||+|-.|...|..|+++|+
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~   39 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCR   39 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEE
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC
Confidence            79999999999999999988764

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=84.10  E-value=1.2  Score=28.93  Aligned_cols=25  Identities=32%  Similarity=0.356  Sum_probs=22.4

Q ss_pred             ccCEEEECC-CHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGA-GPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGa-G~aGl~~A~~L~~~G~   67 (68)
                      ...|+|+|+ |..|..++..|.++|+
T Consensus         7 ~~~vlVtGatG~iG~~l~~~L~~~g~   32 (321)
T 3vps_A            7 KHRILITGGAGFIGGHLARALVASGE   32 (321)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC
T ss_pred             CCeEEEECCCChHHHHHHHHHHHCCC
Confidence            467999999 9999999999998885

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=84.06  E-value=0.81  Score=31.20  Aligned_cols=25  Identities=16%  Similarity=0.258  Sum_probs=22.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|.|||.|..|...|..|++.|+
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~G~   48 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQAGA   48 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHSC
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC
Confidence            3579999999999999999998885

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=84.03  E-value=0.85  Score=33.59  Aligned_cols=26  Identities=27%  Similarity=0.487  Sum_probs=22.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+.+|+|+|+|-+|+.+|-.|...|.
T Consensus       187 ~d~kVVi~GAGaAG~~iA~ll~~~Ga  212 (398)
T 2a9f_A          187 DEVSIVVNGGGSAGLSITRKLLAAGA  212 (398)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CccEEEEECCCHHHHHHHHHHHHcCC
Confidence            45789999999999999998877664

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=84.02  E-value=0.96  Score=29.86  Aligned_cols=23  Identities=35%  Similarity=0.502  Sum_probs=20.9

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +|.|||+|-.|...|..|.+.|+
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~   24 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGY   24 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTC
T ss_pred             eEEEEeccHHHHHHHHHHHHCCC
Confidence            58999999999999999998875

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*

Probab=83.98  E-value=0.83  Score=34.27  Aligned_cols=26  Identities=23%  Similarity=0.220  Sum_probs=23.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+|+|||+|-.|..+|..|++.|+
T Consensus        31 ~~~~VlvvG~GGlGseiak~La~aGV   56 (531)
T 1tt5_A           31 ESAHVCLINATATGTEILKNLVLPGI   56 (531)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHTTTC
T ss_pred             hcCeEEEECcCHHHHHHHHHHHHcCC
Confidence            35899999999999999999999986

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=83.97  E-value=1.2  Score=30.35  Aligned_cols=25  Identities=20%  Similarity=0.244  Sum_probs=20.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...|+|+|+|..|+.++..++..|.
T Consensus       177 g~~VlV~GaG~vG~~a~qla~~~Ga  201 (348)
T 3two_A          177 GTKVGVAGFGGLGSMAVKYAVAMGA  201 (348)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCC
Confidence            4579999999999999888777664

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=83.91  E-value=0.99  Score=31.02  Aligned_cols=23  Identities=43%  Similarity=0.613  Sum_probs=20.5

Q ss_pred             CEEEECC-CHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGA-GPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGa-G~aGl~~A~~L~~~G~   67 (68)
                      +|+|+|+ |..|-.+++.|..+|.
T Consensus         2 KI~V~GaaG~vG~~l~~~L~~~~~   25 (313)
T 1hye_A            2 KVTIIGASGRVGSATALLLAKEPF   25 (313)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTT
T ss_pred             EEEEECCCChhHHHHHHHHHhCCC
Confidence            5899999 9999999999987764

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=83.88  E-value=0.83  Score=31.94  Aligned_cols=21  Identities=38%  Similarity=0.686  Sum_probs=18.9

Q ss_pred             CEEEEC-CCHHHHHHHHHHHHC
Q 035312           45 PVLIVG-AGPVGLVLSILLTKL   65 (68)
Q Consensus        45 dV~IVG-aG~aGl~~A~~L~~~   65 (68)
                      .|+||| +|..|.++|+.|..+
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~   23 (312)
T 3hhp_A            2 KVAVLGAAGGIGQALALLLKTQ   23 (312)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHhC
Confidence            589999 899999999999775

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=83.79  E-value=0.93  Score=31.11  Aligned_cols=23  Identities=13%  Similarity=0.140  Sum_probs=21.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      .+|.|||.|..|...|..|++.|
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G   47 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRN   47 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTT
T ss_pred             CeEEEECccHHHHHHHHHHHHcC
Confidence            57999999999999999999988

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=83.76  E-value=0.74  Score=31.96  Aligned_cols=23  Identities=17%  Similarity=0.296  Sum_probs=20.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      .+|.|||+|-.|...|..|+++|
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G   44 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNA   44 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHcC
Confidence            47999999999999999998876

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=83.73  E-value=1.3  Score=33.64  Aligned_cols=26  Identities=31%  Similarity=0.471  Sum_probs=24.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +.+.|+|||.|..|.+.|..|+.+|+
T Consensus        36 kgK~IaVIGyGsQG~AqAlNLRDSGv   61 (491)
T 3ulk_A           36 QGKKVVIVGCGAQGLNQGLNMRDSGL   61 (491)
T ss_dssp             TTSEEEEESCSHHHHHHHHHHHHTTC
T ss_pred             cCCEEEEeCCChHhHHHHhHHHhcCC
Confidence            45899999999999999999999986

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=83.63  E-value=1.4  Score=30.09  Aligned_cols=25  Identities=44%  Similarity=0.727  Sum_probs=21.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...|+|+|+|..|+.+...++..|.
T Consensus       180 g~~VlV~GaG~vG~~aiqlak~~Ga  204 (363)
T 3m6i_A          180 GDPVLICGAGPIGLITMLCAKAAGA  204 (363)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC
Confidence            4679999999999999888777764

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=83.63  E-value=0.7  Score=35.15  Aligned_cols=25  Identities=20%  Similarity=0.073  Sum_probs=22.3

Q ss_pred             ccCEEEEC--CCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVG--AGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVG--aG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||  +|..|+-+|..|++.|.
T Consensus       528 gk~VvVIG~GgG~~g~e~A~~l~~~G~  554 (729)
T 1o94_A          528 GKRVVILNADTYFMAPSLAEKLATAGH  554 (729)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTC
T ss_pred             CCeEEEEcCCCCchHHHHHHHHHHcCC
Confidence            46899999  99999999999998874

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A

Probab=83.50  E-value=0.78  Score=35.52  Aligned_cols=26  Identities=42%  Similarity=0.438  Sum_probs=23.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+|+|||+|-.|..+|..|++.|+
T Consensus        16 ~~s~VlVVGaGGLGsevak~La~aGV   41 (640)
T 1y8q_B           16 AGGRVLVVGAGGIGCELLKNLVLTGF   41 (640)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             hcCeEEEECcCHHHHHHHHHHHHcCC
Confidence            35899999999999999999999886

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=83.49  E-value=1.2  Score=29.21  Aligned_cols=24  Identities=38%  Similarity=0.470  Sum_probs=21.4

Q ss_pred             cCEEEECC-CHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGA-GPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGa-G~aGl~~A~~L~~~G~   67 (68)
                      ..|+|.|| |..|..++..|.++|+
T Consensus         4 ~~vlVtGatG~iG~~l~~~L~~~G~   28 (345)
T 2z1m_A            4 KRALITGIRGQDGAYLAKLLLEKGY   28 (345)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC
Confidence            46999998 9999999999998875

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=83.44  E-value=0.9  Score=29.49  Aligned_cols=22  Identities=27%  Similarity=0.385  Sum_probs=20.0

Q ss_pred             CEEEECCCHHHHHHHHHHHHCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      +|.|||+|-.|...|..|.+.|
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g   23 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQG   23 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHC
T ss_pred             EEEEECchHHHHHHHHHHHHCC
Confidence            4899999999999999998877

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=83.42  E-value=1.1  Score=33.66  Aligned_cols=26  Identities=27%  Similarity=0.302  Sum_probs=23.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....++|+|+|..|..+|..|++.|.
T Consensus       264 ~GKtVvVtGaGgIG~aiA~~Laa~GA  289 (488)
T 3ond_A          264 AGKVAVVAGYGDVGKGCAAALKQAGA  289 (488)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCCC
Confidence            35779999999999999999999874

>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1

Probab=83.39  E-value=0.82  Score=35.09  Aligned_cols=26  Identities=35%  Similarity=0.469  Sum_probs=23.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+|+|||+|-.|..+|..|++.|+
T Consensus       410 ~~~~vlvvG~GglG~~~~~~L~~~Gv  435 (805)
T 2nvu_B          410 DTCKVLVIGAGGLGCELLKNLALSGF  435 (805)
T ss_dssp             HTCCEEEECCSSHHHHHHHHHHTTTC
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCC
Confidence            46899999999999999999999986

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=83.26  E-value=1.3  Score=30.11  Aligned_cols=25  Identities=40%  Similarity=0.725  Sum_probs=21.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...|+|+|+|..|+.++..++..|.
T Consensus       165 g~~VlV~GaG~vG~~~~q~a~~~Ga  189 (343)
T 2dq4_A          165 GKSVLITGAGPIGLMAAMVVRASGA  189 (343)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC
Confidence            4579999999999999888877774

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=83.24  E-value=1.4  Score=29.80  Aligned_cols=25  Identities=36%  Similarity=0.554  Sum_probs=21.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...|+|+|+|..|+.++..++..|.
T Consensus       161 g~~VlV~GaG~vG~~aiq~ak~~G~  185 (346)
T 4a2c_A          161 NKNVIIIGAGTIGLLAIQCAVALGA  185 (346)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCCcchHHHHHHHHcCC
Confidence            4679999999999999888877764

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=83.18  E-value=1.3  Score=30.51  Aligned_cols=25  Identities=24%  Similarity=0.232  Sum_probs=21.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...|+|+|+|+.|+.++..++..|.
T Consensus       190 g~~VlV~G~G~vG~~a~qla~~~Ga  214 (363)
T 3uog_A          190 GDRVVVQGTGGVALFGLQIAKATGA  214 (363)
T ss_dssp             TCEEEEESSBHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC
Confidence            3579999999999999888877764

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=83.08  E-value=1.1  Score=30.85  Aligned_cols=25  Identities=20%  Similarity=0.238  Sum_probs=20.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...|+|+|+|+.|+.++..++..|.
T Consensus       192 g~~VlV~GaG~vG~~aiqlak~~Ga  216 (373)
T 1p0f_A          192 GSTCAVFGLGGVGFSAIVGCKAAGA  216 (373)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC
Confidence            3579999999999998877766663

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=82.99  E-value=1.4  Score=30.23  Aligned_cols=25  Identities=36%  Similarity=0.693  Sum_probs=20.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...|+|+|+|..|+.++..++..|.
T Consensus       172 g~~VlV~GaG~vG~~aiqlak~~Ga  196 (356)
T 1pl8_A          172 GHKVLVCGAGPIGMVTLLVAKAMGA  196 (356)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC
Confidence            3579999999999998887776664

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=82.94  E-value=0.79  Score=31.34  Aligned_cols=24  Identities=29%  Similarity=0.458  Sum_probs=21.2

Q ss_pred             cCEEEECC-CHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGA-GPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGa-G~aGl~~A~~L~~~G~   67 (68)
                      ..|+|+|+ |..|-.++..|.++|+
T Consensus         5 mkVlVtGaaGfIG~~l~~~L~~~g~   29 (327)
T 1y7t_A            5 VRVAVTGAAGQIGYSLLFRIAAGEM   29 (327)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC
Confidence            36999997 9999999999988874

>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}

Probab=82.88  E-value=1.3  Score=30.49  Aligned_cols=24  Identities=25%  Similarity=0.580  Sum_probs=21.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +.|+|+|+|..|...+..+++.|+
T Consensus         2 ~~Ililg~g~~g~~~~~a~~~~G~   25 (380)
T 3ax6_A            2 KKIGIIGGGQLGKMMTLEAKKMGF   25 (380)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC
Confidence            369999999999999999999886

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=82.78  E-value=1.2  Score=29.52  Aligned_cols=24  Identities=25%  Similarity=0.354  Sum_probs=21.6

Q ss_pred             cCEEEECC-CHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGA-GPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGa-G~aGl~~A~~L~~~G~   67 (68)
                      .+|.|||+ |-.|...|..|.+.|+
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~   36 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAH   36 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC
Confidence            46999999 9999999999998874

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=82.71  E-value=1.3  Score=31.36  Aligned_cols=25  Identities=24%  Similarity=0.323  Sum_probs=22.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|.|||.|..|...|..|++.|+
T Consensus        22 ~mkIgiIGlG~mG~~~A~~L~~~G~   46 (358)
T 4e21_A           22 SMQIGMIGLGRMGADMVRRLRKGGH   46 (358)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECchHHHHHHHHHHHhCCC
Confidence            4689999999999999999999885

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=82.69  E-value=0.86  Score=31.63  Aligned_cols=23  Identities=35%  Similarity=0.527  Sum_probs=20.6

Q ss_pred             cCEEEEC-CCHHHHHHHHHHHHCC
Q 035312           44 VPVLIVG-AGPVGLVLSILLTKLG   66 (68)
Q Consensus        44 ~dV~IVG-aG~aGl~~A~~L~~~G   66 (68)
                      ..|+||| +|..|.+++..|..+|
T Consensus         9 mKI~ViGAaG~VG~~la~~L~~~g   32 (326)
T 1smk_A            9 FKVAILGAAGGIGQPLAMLMKMNP   32 (326)
T ss_dssp             EEEEEETTTSTTHHHHHHHHHHCT
T ss_pred             CEEEEECCCChHHHHHHHHHHhCC
Confidence            4799999 7999999999998876

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=82.69  E-value=1.2  Score=29.87  Aligned_cols=25  Identities=40%  Similarity=0.547  Sum_probs=20.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...|+|+|+|+.|+.++..++..|.
T Consensus       143 g~~VlV~GaG~vG~~a~qlak~~Ga  167 (315)
T 3goh_A          143 QREVLIVGFGAVNNLLTQMLNNAGY  167 (315)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC
Confidence            4679999999999998877776663

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=82.63  E-value=1.4  Score=30.01  Aligned_cols=23  Identities=30%  Similarity=0.479  Sum_probs=21.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      .+|.|||+|-.|...|..|.++|
T Consensus        23 mkI~iIG~G~mG~ala~~L~~~G   45 (322)
T 2izz_A           23 MSVGFIGAGQLAFALAKGFTAAG   45 (322)
T ss_dssp             CCEEEESCSHHHHHHHHHHHHTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC
Confidence            47999999999999999999887

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=82.54  E-value=1.4  Score=30.48  Aligned_cols=25  Identities=32%  Similarity=0.429  Sum_probs=21.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...|+|+|+|+.|+.++..++..|.
T Consensus       183 g~~VlV~GaG~vG~~aiqlak~~Ga  207 (370)
T 4ej6_A          183 GSTVAILGGGVIGLLTVQLARLAGA  207 (370)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC
Confidence            4579999999999998888777774

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=82.52  E-value=1.2  Score=30.58  Aligned_cols=25  Identities=28%  Similarity=0.392  Sum_probs=20.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...|+|+|+|..|+.++..++..|.
T Consensus       180 g~~VlV~GaG~vG~~~~qlak~~Ga  204 (360)
T 1piw_A          180 GKKVGIVGLGGIGSMGTLISKAMGA  204 (360)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC
Confidence            3579999999999998887776663

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=82.49  E-value=1.3  Score=33.13  Aligned_cols=26  Identities=31%  Similarity=0.295  Sum_probs=22.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....|+|||.|..|..+|..|+..|.
T Consensus       273 ~GktV~IiG~G~IG~~~A~~lka~Ga  298 (494)
T 3ce6_A          273 GGKKVLICGYGDVGKGCAEAMKGQGA  298 (494)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CcCEEEEEccCHHHHHHHHHHHHCCC
Confidence            45789999999999999999988774

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=82.29  E-value=1.4  Score=30.59  Aligned_cols=25  Identities=40%  Similarity=0.574  Sum_probs=20.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...|+|+|+|+.|+.++..++..|.
T Consensus       186 g~~VlV~GaG~vG~~aiqlAk~~Ga  210 (398)
T 1kol_A          186 GSTVYVAGAGPVGLAAAASARLLGA  210 (398)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCC
Confidence            3579999999999998887776664

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=82.23  E-value=1.4  Score=30.41  Aligned_cols=26  Identities=27%  Similarity=0.304  Sum_probs=21.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....|+|+|+|..|+.++..++..|.
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga  212 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFGS  212 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC
Confidence            34579999999999999888877764

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=82.16  E-value=1.6  Score=28.60  Aligned_cols=25  Identities=32%  Similarity=0.267  Sum_probs=22.1

Q ss_pred             ccCEEEECC-CHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGA-GPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGa-G~aGl~~A~~L~~~G~   67 (68)
                      ...|+|.|+ |..|..++..|.++|.
T Consensus        11 ~~~vlVTGatG~iG~~l~~~L~~~g~   36 (342)
T 1y1p_A           11 GSLVLVTGANGFVASHVVEQLLEHGY   36 (342)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCC
Confidence            467999998 9999999999998875

>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}

Probab=82.14  E-value=1.4  Score=25.94  Aligned_cols=24  Identities=46%  Similarity=0.555  Sum_probs=20.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      ...+++|||+|-.|...+-.+.+.
T Consensus         3 ~~~~vlIiGaG~~g~~l~~~l~~~   26 (141)
T 3nkl_A            3 AKKKVLIYGAGSAGLQLANMLRQG   26 (141)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC
Confidence            346899999999999888888764

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=82.13  E-value=1.3  Score=34.13  Aligned_cols=24  Identities=25%  Similarity=0.310  Sum_probs=22.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..|.|||+|.-|...|..|+++|+
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~  336 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNY  336 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTC
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCC
Confidence            579999999999999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	68
d1pn0a1	360	c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So	4e-07
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	1e-06
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	1e-06
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	2e-06
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	1e-04
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	3e-04
d1w4xa1	298	c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy	3e-04
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	4e-04
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	5e-04
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	5e-04
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	5e-04
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	5e-04
d2gmha1	380	c.3.1.2 (A:4-236,A:336-482) Electron transfer flav	0.001
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	0.002
d2gv8a1	335	c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox	0.002
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	0.002
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	0.003
d1gtea4	196	c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de	0.004

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

 Score = 42.8 bits (99), Expect = 4e-07
 Identities = 12/28 (42%), Positives = 19/28 (67%)

Query: 39 SNEAVVPVLIVGAGPVGLVLSILLTKLG 66
           +E+   VLIVGAGP GL+ + +L++  
Sbjct: 3  YSESYCDVLIVGAGPAGLMAARVLSEYV 30

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 41.6 bits (96), Expect = 1e-06
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
          +LI GAG  GL  ++ L + GI
Sbjct: 4  ILIAGAGIGGLSCALALHQAGI 25

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 41.1 bits (95), Expect = 1e-06
 Identities = 14/23 (60%), Positives = 16/23 (69%)

Query: 45 PVLIVGAGPVGLVLSILLTKLGI 67
           V I+GAGP GL+L  LL K GI
Sbjct: 4  QVAIIGAGPSGLLLGQLLHKAGI 26

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 40.9 bits (94), Expect = 2e-06
 Identities = 6/22 (27%), Positives = 12/22 (54%)

Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
          + +VG    GL  +++L   G+
Sbjct: 7  IAVVGGSISGLTAALMLRDAGV 28

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 35.8 bits (81), Expect = 1e-04
 Identities = 8/22 (36%), Positives = 14/22 (63%)

Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
          V+++G GP GL+ +I   + G 
Sbjct: 5  VIVIGGGPSGLMAAIGAAEEGA 26

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 34.8 bits (78), Expect = 3e-04
 Identities = 6/21 (28%), Positives = 13/21 (61%)

Query: 46 VLIVGAGPVGLVLSILLTKLG 66
          V+++G G    +LS +++  G
Sbjct: 9  VIVLGTGLTECILSGIMSVNG 29

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 34.4 bits (78), Expect = 3e-04
 Identities = 12/24 (50%), Positives = 14/24 (58%)

Query: 44 VPVLIVGAGPVGLVLSILLTKLGI 67
          V VL+VGAG  GL     L +LG 
Sbjct: 8  VDVLVVGAGFSGLYALYRLRELGR 31

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 34.2 bits (76), Expect = 4e-04
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
          V++VGAG  G+  +  L++ GI
Sbjct: 3  VIVVGAGMSGISAAKRLSEAGI 24

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 34.0 bits (77), Expect = 5e-04
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
           +IVG+G  G V +  L KL  
Sbjct: 4  YIIVGSGLFGAVCANELKKLNK 25

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 33.7 bits (76), Expect = 5e-04
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
           +I+GAG  GL  +  L KLG 
Sbjct: 7  NIIIGAGAAGLFCAAQLAKLGK 28

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 34.0 bits (77), Expect = 5e-04
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
          +LIVGAG  G V+   L + G 
Sbjct: 5  ILIVGAGFSGAVIGRQLAEKGH 26

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.0 bits (76), Expect = 5e-04
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 46 VLIVGAGPVGLVLSILLTKLG 66
          V+++G G    +LS LL+  G
Sbjct: 8  VIVLGTGITECILSGLLSVDG 28

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 33.3 bits (75), Expect = 0.001
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 46 VLIVGAGPVGLVLSILLTKLG 66
          V+IVGAGP GL  +  L +L 
Sbjct: 35 VVIVGAGPAGLSAATRLKQLA 55

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 32.4 bits (72), Expect = 0.002
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
          V+IVGAG  GL  + +L   G 
Sbjct: 33 VVIVGAGMAGLSAAYVLAGAGH 54

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 32.3 bits (72), Expect = 0.002
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIF 68
          + I+GAGP GLV +  L     F
Sbjct: 7  IAIIGAGPSGLVTAKALLAEKAF 29

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 32.1 bits (71), Expect = 0.002
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
          V ++GAG  GL  +  L   G+
Sbjct: 4  VAVIGAGVSGLAAAYKLKIHGL 25

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 31.6 bits (70), Expect = 0.003
 Identities = 8/22 (36%), Positives = 11/22 (50%)

Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
          V +VG G  GL ++  L   G 
Sbjct: 3  VAVVGGGISGLAVAHHLRSRGT 24

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 31.3 bits (69), Expect = 0.004
 Identities = 7/22 (31%), Positives = 13/22 (59%)

Query: 46 VLIVGAGPVGLVLSILLTKLGI 67
          + ++GAGP  +  +  L +LG 
Sbjct: 7  IALLGAGPASISCASFLARLGY 28

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	68
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	98.95
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	98.94
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.9
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.85
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	98.81
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.8
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.79
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.75
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	98.74
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.71
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	98.7
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	98.68
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.67
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	98.66
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.65
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	98.65
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	98.63
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.61
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.61
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.6
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.6
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.58
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.57
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.57
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.56
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.56
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.55
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.55
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.54
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	98.54
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.53
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.53
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.51
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.51
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.46
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.45
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.44
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	98.43
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.41
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.41
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.4
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.37
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	98.34
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.33
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.33
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	98.32
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	98.31
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.27
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.26
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.25
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.24
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.21
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.2
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	98.18
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.18
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	98.11
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.09
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.03
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	97.94
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	97.93
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	97.79
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	97.77
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	97.74
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.71
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	97.54
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.53
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.48
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	97.37
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	97.31
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	97.29
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	97.28
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.25
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.24
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	97.23
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.16
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.06
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	97.04
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	96.97
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.96
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	96.95
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	96.94
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	96.9
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.89
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.89
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	96.86
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	96.59
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.58
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	96.34
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	96.32
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	96.21
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	95.96
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	95.9
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	95.62
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	95.61
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	95.38
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	95.32
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.31
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	95.22
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	95.12
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	94.98
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	94.94
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	94.81
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	94.8
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	94.75
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	94.74
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	94.67
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	94.51
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	94.49
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	94.48
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	94.4
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	94.37
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	94.29
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	94.19
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	94.1
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	94.08
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	94.06
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	94.03
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	93.87
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	93.86
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	93.8
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	93.75
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	93.61
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	93.59
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	93.56
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	93.53
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	93.39
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	93.37
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	93.37
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	93.35
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	93.33
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	93.32
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	93.22
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	93.17
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	93.14
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	93.08
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	93.01
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	92.96
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	92.8
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	92.76
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	92.72
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	92.71
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	92.68
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	92.56
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	92.55
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	92.53
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	92.5
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	92.36
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	92.24
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	91.92
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	91.56
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	91.37
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	91.27
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	91.2
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	91.19
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	90.77
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	90.48
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	90.39
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	90.31
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	90.03
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	89.66
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	89.39
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	89.28
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	89.17
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	88.76
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	88.67
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	88.62
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	88.53
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	88.17
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	88.17
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	88.08
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	88.04
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	87.21
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	87.09
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	86.5
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	86.38
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	86.31
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	86.02
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	85.08
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	84.44
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	84.36
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	82.43
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	81.73
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	81.29
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	80.78
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	80.69

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.95  E-value=3.2e-10  Score=68.11  Aligned_cols=27  Identities=30%  Similarity=0.393  Sum_probs=25.1

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +.++||+|||+|++||+||+.|+++|+
T Consensus         3 ~~~yDviViGaG~~Gl~~A~~La~~G~   29 (297)
T d2bcgg1           3 DTDYDVIVLGTGITECILSGLLSVDGK   29 (297)
T ss_dssp             CCBCSEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCC
Confidence            357999999999999999999999986

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.90  E-value=4.7e-10  Score=66.84  Aligned_cols=24  Identities=38%  Similarity=0.588  Sum_probs=22.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .||+||||||+||+||+.|+++|+
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~   24 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGI   24 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTC
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCC
Confidence            489999999999999999999985

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=9.9e-10  Score=67.63  Aligned_cols=27  Identities=30%  Similarity=0.538  Sum_probs=24.7

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++.+|+|||||++||+||+.|+++|+
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~~G~   29 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQSFGM   29 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTC
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCC
Confidence            356889999999999999999999986

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=98.81  E-value=7.6e-10  Score=70.09  Aligned_cols=27  Identities=37%  Similarity=0.476  Sum_probs=24.5

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...++|+|||||++||+||+.|+++|+
T Consensus        28 ~~pkkV~IIGaG~aGLsaA~~L~~~G~   54 (370)
T d2iida1          28 SNPKHVVIVGAGMAGLSAAYVLAGAGH   54 (370)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHHTC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCC
Confidence            455799999999999999999999986

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.80  E-value=1.7e-09  Score=67.49  Aligned_cols=26  Identities=38%  Similarity=0.705  Sum_probs=24.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ++|||+|||+|||||+||+++++.|.
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~G~   27 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQLGL   27 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCC
Confidence            57999999999999999999999985

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.79  E-value=3.4e-09  Score=68.62  Aligned_cols=47  Identities=19%  Similarity=0.202  Sum_probs=36.7

Q ss_pred             CccccccCCCCCCCcccc--cCccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           21 YPYGYTPCRALSDSKTIV--SNEAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~--~~~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .|++|..+|....+....  .....++|+|||+|||||++|+.|+++|+
T Consensus        19 ~~~~C~~Np~~g~e~~~~~~~~~~~k~V~IIGaGPAGL~AA~~la~~G~   67 (179)
T d1ps9a3          19 KVTSCLVNPRACHETKMPILPAVQKKNLAVVGAGPAGLAFAINAAARGH   67 (179)
T ss_dssp             CCCCCSSCTTTTCTTTSCCCSCSSCCEEEEECCSHHHHHHHHHHHTTTC
T ss_pred             CeeEEeeCccccCccccccCCCCCCcEEEEECccHHHHHHHHHHHhhcc
Confidence            467788888766544322  23456899999999999999999999986

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.75  E-value=2.4e-09  Score=65.66  Aligned_cols=24  Identities=33%  Similarity=0.499  Sum_probs=22.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ++|+||||||+||+||++|+++|+
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~   25 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGL   25 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC
Confidence            579999999999999999999986

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=98.74  E-value=3.9e-09  Score=67.22  Aligned_cols=25  Identities=32%  Similarity=0.590  Sum_probs=23.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ++||+||||||+||+||+.|+++|+
T Consensus         2 ~yDViIIGaG~aGl~aA~~la~~G~   26 (251)
T d2i0za1           2 HYDVIVIGGGPSGLMAAIGAAEEGA   26 (251)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCC
Confidence            6999999999999999999999986

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.71  E-value=8.1e-09  Score=72.00  Aligned_cols=24  Identities=42%  Similarity=0.635  Sum_probs=22.2

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHH
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTK   64 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~   64 (68)
                      .+++||+||||||||++||+.|++
T Consensus        30 ~~e~DViIVGgGPAGlsaA~~LA~   53 (380)
T d2gmha1          30 AEEADVVIVGAGPAGLSAATRLKQ   53 (380)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHH
T ss_pred             cccCCEEEECCCHHHHHHHHHHHh
Confidence            456999999999999999999997

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=98.70  E-value=4.9e-09  Score=64.67  Aligned_cols=24  Identities=33%  Similarity=0.426  Sum_probs=22.6

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGIF   68 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~~   68 (68)
                      ||+|||||++||++|+.|+++|+.
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~   25 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTD   25 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCC
Confidence            799999999999999999999863

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=98.68  E-value=6e-09  Score=67.49  Aligned_cols=26  Identities=35%  Similarity=0.649  Sum_probs=24.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+|||+|||||++|+++|++|+++|+
T Consensus         2 ~~yDvvIIGaGi~Gls~A~~La~~G~   27 (281)
T d2gf3a1           2 THFDVIVVGAGSMGMAAGYQLAKQGV   27 (281)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCC
Confidence            57999999999999999999999986

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.67  E-value=5.6e-09  Score=65.69  Aligned_cols=27  Identities=37%  Similarity=0.677  Sum_probs=24.9

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++|||+|||+||+|++||..+++.|.
T Consensus         3 ~~~yDviVIG~GpAGl~aA~~aa~~G~   29 (233)
T d1v59a1           3 NKSHDVVIIGGGPAGYVAAIKAAQLGF   29 (233)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CcccCEEEECCCHHHHHHHHHHHHCCC
Confidence            357999999999999999999999986

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=7.6e-09  Score=66.03  Aligned_cols=24  Identities=33%  Similarity=0.567  Sum_probs=22.6

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGIF   68 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~~   68 (68)
                      ||+|||||++||++|+.|+++|+.
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~   24 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLN   24 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCC
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCC
Confidence            899999999999999999999963

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.65  E-value=8.8e-09  Score=64.60  Aligned_cols=26  Identities=38%  Similarity=0.635  Sum_probs=24.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ++|||+|||+||+||++|+.+++.|.
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~   27 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGF   27 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCC
Confidence            46999999999999999999999885

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=98.65  E-value=9e-09  Score=66.77  Aligned_cols=26  Identities=38%  Similarity=0.579  Sum_probs=24.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +.+||+||||||+||+||+.|+++|+
T Consensus         3 ~~~DViIIGaG~aGl~aA~~la~~G~   28 (253)
T d2gqfa1           3 QYSENIIIGAGAAGLFCAAQLAKLGK   28 (253)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCC
Confidence            46899999999999999999999986

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=98.63  E-value=1e-08  Score=65.94  Aligned_cols=26  Identities=19%  Similarity=0.376  Sum_probs=24.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +++||+|||||++|+++|++|+++|.
T Consensus         3 ~~~DvvIIGaGi~Gls~A~~La~~G~   28 (276)
T d1ryia1           3 RHYEAVVIGGGIIGSAIAYYLAKENK   28 (276)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCC
Confidence            46899999999999999999999985

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.61  E-value=1.1e-08  Score=65.35  Aligned_cols=27  Identities=26%  Similarity=0.511  Sum_probs=24.9

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +.+|||+|||+||+||+||.+|++.|.
T Consensus         4 ~~dyDviIIG~GPaGlsaA~~aa~~G~   30 (229)
T d1ojta1           4 DAEYDVVVLGGGPGGYSAAFAAADEGL   30 (229)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCC
Confidence            457999999999999999999999985

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.61  E-value=1.3e-08  Score=66.02  Aligned_cols=26  Identities=54%  Similarity=0.773  Sum_probs=24.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGIF   68 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~~   68 (68)
                      ++||+||||||+||++|+.|+++|+.
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~~   27 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGID   27 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCC
Confidence            57999999999999999999999973

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.60  E-value=1.5e-08  Score=63.19  Aligned_cols=26  Identities=27%  Similarity=0.616  Sum_probs=23.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+++|+|||||++||++|+.|+++|.
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~~G~   30 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILARKGY   30 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCcEEEECccHHHHHHHHHHHHCCC
Confidence            35789999999999999999999985

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.60  E-value=1.8e-08  Score=61.94  Aligned_cols=26  Identities=27%  Similarity=0.581  Sum_probs=24.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..++|+||||||+||++|+.|+++|+
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~   28 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGY   28 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCC
Confidence            46899999999999999999999986

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.58  E-value=1.6e-08  Score=63.75  Aligned_cols=24  Identities=42%  Similarity=0.677  Sum_probs=22.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .||+||||||+||++|+.|+++|+
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi   25 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGI   25 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC
Confidence            689999999999999999999996

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.57  E-value=1.7e-08  Score=61.86  Aligned_cols=24  Identities=46%  Similarity=0.751  Sum_probs=23.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      |||+||||||+|+.||+.+++.|.
T Consensus         2 yDViIIGgGpaGl~AAi~aar~G~   25 (184)
T d1fl2a1           2 YDVLIVGSGPAGAAAAIYSARKGI   25 (184)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTC
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCC
Confidence            799999999999999999999986

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.57  E-value=2.4e-08  Score=62.67  Aligned_cols=26  Identities=23%  Similarity=0.332  Sum_probs=23.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +.|||+|||+||+|+++|..+++.|.
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~   27 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYK   27 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSC
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCC
Confidence            46999999999999999999999764

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.56  E-value=1.5e-08  Score=64.39  Aligned_cols=25  Identities=24%  Similarity=0.365  Sum_probs=23.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +|||+|||+||+|++||+.+++.|.
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~~G~   27 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAKFDK   27 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGGGCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCC
Confidence            5999999999999999999999986

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.56  E-value=2.4e-08  Score=63.27  Aligned_cols=26  Identities=23%  Similarity=0.488  Sum_probs=24.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+|+||||||+||++|..|+++|+
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~   28 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGV   28 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCC
Confidence            45789999999999999999999997

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.55  E-value=2.3e-08  Score=66.16  Aligned_cols=26  Identities=23%  Similarity=0.470  Sum_probs=24.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +.+||+|||+|++||++|+.|+++|.
T Consensus         4 ~~~DVvVIG~G~AGl~AAl~aa~~G~   29 (336)
T d2bs2a2           4 QYCDSLVIGGGLAGLRAAVATQQKGL   29 (336)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHTTTC
T ss_pred             eecCEEEECcCHHHHHHHHHHHHCCC
Confidence            46899999999999999999999986

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.55  E-value=2.1e-08  Score=63.10  Aligned_cols=26  Identities=15%  Similarity=0.180  Sum_probs=24.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ++|||+|||+||+|+++|..+++.|.
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~G~   26 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMYGQ   26 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCC
Confidence            36999999999999999999999985

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.54  E-value=1.3e-08  Score=64.05  Aligned_cols=24  Identities=29%  Similarity=0.404  Sum_probs=22.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      .++|+|||+|||||+||++|+++|
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G   25 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAA   25 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHH
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcC
Confidence            368999999999999999999987

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.54  E-value=3.2e-08  Score=64.98  Aligned_cols=27  Identities=33%  Similarity=0.522  Sum_probs=24.9

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+++||+|||+|++||++|+.|+++|.
T Consensus        14 ~e~~DVlVIG~G~aGl~aA~~la~~G~   40 (308)
T d1y0pa2          14 HDTVDVVVVGSGGAGFSAAISATDSGA   40 (308)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCC
Confidence            357999999999999999999999986

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.53  E-value=3.4e-08  Score=61.58  Aligned_cols=26  Identities=42%  Similarity=0.622  Sum_probs=24.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+|||+||+|+++|..+++.|.
T Consensus         2 ~~~DviVIG~GpaGl~aA~~aar~G~   27 (223)
T d1ebda1           2 IETETLVVGAGPGGYVAAIRAAQLGQ   27 (223)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCC
Confidence            46999999999999999999999985

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.53  E-value=2.5e-08  Score=62.14  Aligned_cols=27  Identities=22%  Similarity=0.534  Sum_probs=24.7

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+++||+|||+||+||.||+.|+|.|.
T Consensus         3 ~k~~dVvIIGGGpaGl~AA~~~ar~g~   29 (190)
T d1trba1           3 TKHSKLLILGSGPAGYTAAVYAARANL   29 (190)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHTTTC
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCC
Confidence            457899999999999999999999885

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.51  E-value=2.1e-08  Score=64.66  Aligned_cols=27  Identities=41%  Similarity=0.544  Sum_probs=24.8

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...++|+||||||+||++|..|+++|+
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~   73 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGY   73 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhcc
Confidence            456899999999999999999999986

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.51  E-value=2.8e-08  Score=62.45  Aligned_cols=26  Identities=23%  Similarity=0.401  Sum_probs=24.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .++||+||||||+||.||+.|+|.|.
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~   29 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAEL   29 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCC
Confidence            56999999999999999999999885

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.46  E-value=4.5e-08  Score=64.29  Aligned_cols=26  Identities=35%  Similarity=0.534  Sum_probs=23.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHC-CC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKL-GI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~-G~   67 (68)
                      .++||+|||+||+||++|+.|+++ |+
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~   58 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNV   58 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCC
Confidence            469999999999999999999874 76

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.45  E-value=4.3e-08  Score=63.88  Aligned_cols=23  Identities=48%  Similarity=0.806  Sum_probs=20.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHH
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTK   64 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~   64 (68)
                      ..|||+||||||+||++|..|++
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~   28 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSE   28 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHh
Confidence            46999999999999999999963

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=8.4e-08  Score=60.12  Aligned_cols=26  Identities=31%  Similarity=0.450  Sum_probs=24.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+||++|||+||+|+++|..+++.|.
T Consensus         2 ~~yDviIIG~GpaG~~aA~~aar~G~   27 (221)
T d3grsa1           2 ASYDYLVIGGGSGGLASARRAAELGA   27 (221)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CccCEEEECCCHHHHHHHHHHHHCCC
Confidence            36999999999999999999999885

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=98.43  E-value=8.1e-08  Score=63.80  Aligned_cols=27  Identities=26%  Similarity=0.506  Sum_probs=25.0

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+.+||+|||+|++||++|+.|+++|.
T Consensus        21 ~et~DVvVIG~G~aGl~aA~~la~~G~   47 (322)
T d1d4ca2          21 KETTDVVIIGSGGAGLAAAVSARDAGA   47 (322)
T ss_dssp             CEECSEEEECSSHHHHHHHHHHHTTTC
T ss_pred             CCcceEEEECcCHHHHHHHHHHHHCCC
Confidence            457999999999999999999999986

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.41  E-value=4.4e-08  Score=62.59  Aligned_cols=25  Identities=24%  Similarity=0.340  Sum_probs=23.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ++|||+|||+||||+++|+.+++.|
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~g   26 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASLH   26 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHH
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcC
Confidence            5799999999999999999998865

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.41  E-value=9.5e-08  Score=60.38  Aligned_cols=27  Identities=41%  Similarity=0.668  Sum_probs=24.9

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..++|++|||+||+|+.+|..+++.|.
T Consensus         3 ~~~~DlvVIG~GpaGl~aA~~aa~~G~   29 (220)
T d1lvla1           3 TIQTTLLIIGGGPGGYVAAIRAGQLGI   29 (220)
T ss_dssp             CEECSEEEECCSHHHHHHHHHHHHHTC
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Confidence            467999999999999999999999885

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.40  E-value=8.5e-08  Score=63.00  Aligned_cols=27  Identities=33%  Similarity=0.551  Sum_probs=24.9

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +.++||+|||+|++|+++|..|+++|+
T Consensus         2 d~~yDviIVGsG~aG~v~A~~La~~G~   28 (379)
T d2f5va1           2 DIKYDVVIVGSGPIGCTYARELVGAGY   28 (379)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCcccEEEECcCHHHHHHHHHHhhCCC
Confidence            357999999999999999999999986

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.37  E-value=8.3e-08  Score=64.28  Aligned_cols=24  Identities=38%  Similarity=0.443  Sum_probs=22.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +||+|||||++||++|+.|+++|.
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~~g~   25 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKKLNK   25 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTC
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCC
Confidence            699999999999999999999885

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.34  E-value=1.2e-07  Score=63.19  Aligned_cols=27  Identities=37%  Similarity=0.565  Sum_probs=24.8

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+++||+|||+|++||++|+.++++|.
T Consensus        17 ~e~~DVvVIGaG~aGl~AA~~aa~~G~   43 (317)
T d1qo8a2          17 SETTQVLVVGAGSAGFNASLAAKKAGA   43 (317)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCC
Confidence            457999999999999999999999986

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.33  E-value=1.8e-07  Score=63.32  Aligned_cols=28  Identities=43%  Similarity=0.462  Sum_probs=25.2

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGIF   68 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~~   68 (68)
                      .++.||+|||||++||++|..|+++|+.
T Consensus         5 ~~~~dV~IIGAG~sGl~~a~~L~~~G~~   32 (298)
T d1w4xa1           5 PEEVDVLVVGAGFSGLYALYRLRELGRS   32 (298)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCC
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCC
Confidence            3579999999999999999999999863

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.33  E-value=1.9e-07  Score=62.75  Aligned_cols=25  Identities=40%  Similarity=0.557  Sum_probs=23.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .|||+||||||||+.||++++|.|.
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~   26 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGV   26 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCC
Confidence            4899999999999999999999986

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=98.32  E-value=2e-07  Score=60.70  Aligned_cols=24  Identities=38%  Similarity=0.473  Sum_probs=22.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .||+|||||++|+++|++|+++|.
T Consensus         2 ~dViIIGaGi~G~s~A~~La~~G~   25 (305)
T d1pj5a2           2 PRIVIIGAGIVGTNLADELVTRGW   25 (305)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCC
Confidence            599999999999999999999984

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=98.31  E-value=1.5e-07  Score=63.10  Aligned_cols=27  Identities=19%  Similarity=0.422  Sum_probs=24.9

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+++||+|||+|+|||+||+.++++|.
T Consensus         5 ~~~~DVlVVG~G~AGl~AAl~aa~~G~   31 (330)
T d1neka2           5 VREFDAVVIGAGGAGMRAALQISQSGQ   31 (330)
T ss_dssp             EEEESCEEECCSHHHHHHHHHHHHTTC
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHcCC
Confidence            467999999999999999999999985

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=2.1e-07  Score=61.46  Aligned_cols=26  Identities=38%  Similarity=0.612  Sum_probs=23.3

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      +.++||+|||+|+|||++|+.++++|
T Consensus         5 ~~~~DVvVVG~G~AGl~AA~~a~~~g   30 (305)
T d1chua2           5 EHSCDVLIIGSGAAGLSLALRLADQH   30 (305)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHTTTS
T ss_pred             cccCCEEEECccHHHHHHHHHhhcCC
Confidence            45799999999999999999998765

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.26  E-value=4.1e-07  Score=60.24  Aligned_cols=25  Identities=20%  Similarity=0.203  Sum_probs=22.2

Q ss_pred             CccccCEEEECCCHHHHHHHHHHHH
Q 035312           40 NEAVVPVLIVGAGPVGLVLSILLTK   64 (68)
Q Consensus        40 ~~~~~dV~IVGaG~aGl~~A~~L~~   64 (68)
                      +..++||+|||+|++||++|+.|++
T Consensus        18 e~~e~DVlIIG~G~AGl~AA~~aa~   42 (356)
T d1jnra2          18 EVVETDILIIGGGFSGCGAAYEAAY   42 (356)
T ss_dssp             EEEECSEEEECCSHHHHHHHHHHHH
T ss_pred             eEEecCEEEECCCHHHHHHHHHHHH
Confidence            3457999999999999999999975

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.25  E-value=3e-07  Score=62.22  Aligned_cols=25  Identities=40%  Similarity=0.509  Sum_probs=23.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ++.|+|||||++||++|+.|+++|+
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~   26 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGH   26 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTC
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCC
Confidence            4789999999999999999999885

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.24  E-value=3e-07  Score=58.22  Aligned_cols=23  Identities=30%  Similarity=0.496  Sum_probs=20.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      .+|+|||+|||||+||..|++++
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~   24 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHH   24 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHC
T ss_pred             CeEEEECccHHHHHHHHHHHhcC
Confidence            57999999999999999998763

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.21  E-value=5.6e-07  Score=58.48  Aligned_cols=24  Identities=13%  Similarity=0.340  Sum_probs=23.0

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ||++|||+||+|+.+|..+++.|.
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~   25 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNA   25 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCC
Confidence            799999999999999999999986

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.20  E-value=4.1e-07  Score=60.53  Aligned_cols=24  Identities=46%  Similarity=0.652  Sum_probs=21.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      .++||+|||+||+||+||+.|+++
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~   72 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKN   72 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHH
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHh
Confidence            468999999999999999999965

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.18  E-value=3.4e-07  Score=56.91  Aligned_cols=23  Identities=26%  Similarity=0.485  Sum_probs=21.3

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +|+|||||++||++|+.|+++|.
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~   24 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYH   24 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHT
T ss_pred             EEEEECchHHHHHHHHHHHHCCC
Confidence            59999999999999999999874

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.18  E-value=5.3e-07  Score=60.14  Aligned_cols=24  Identities=38%  Similarity=0.511  Sum_probs=21.9

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ++|+|||||++||++|..|+++|.
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~   28 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKA   28 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTC
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCC
Confidence            679999999999999999988774

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=98.11  E-value=1e-06  Score=58.89  Aligned_cols=27  Identities=41%  Similarity=0.652  Sum_probs=25.1

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+++||+|||+|++|+.+|..|+++|+
T Consensus         5 ~~~~dvIVVGsG~aG~v~A~rLaeaG~   31 (370)
T d3coxa1           5 GDRVPALVIGSGYGGAVAALRLTQAGI   31 (370)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCC
Confidence            467999999999999999999999986

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.09  E-value=1.5e-06  Score=56.49  Aligned_cols=27  Identities=22%  Similarity=0.324  Sum_probs=24.7

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..++|++|||+||+|+.+|..+++.|.
T Consensus        40 ~k~yDvvVIGgG~aG~~aA~~~a~~G~   66 (261)
T d1mo9a1          40 PREYDAIFIGGGAAGRFGSAYLRAMGG   66 (261)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCC
Confidence            467999999999999999999999885

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.03  E-value=1.2e-06  Score=58.64  Aligned_cols=25  Identities=32%  Similarity=0.389  Sum_probs=22.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      .++||+|||+|+|||++|+.++++|
T Consensus         4 ~~~DVlVIG~G~AGl~AA~~a~~~~   28 (311)
T d1kf6a2           4 FQADLAIVGAGGAGLRAAIAAAQAN   28 (311)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHC
T ss_pred             eecCEEEECccHHHHHHHHHHHHhC
Confidence            4699999999999999999998763

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.94  E-value=2.3e-06  Score=54.78  Aligned_cols=24  Identities=21%  Similarity=0.470  Sum_probs=21.2

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ++|+|||+||+|++||+.+++.|.
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~   25 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHP   25 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCT
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCC
Confidence            589999999999999999887653

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=97.93  E-value=3e-06  Score=56.37  Aligned_cols=24  Identities=29%  Similarity=0.576  Sum_probs=22.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .||+|||+|++|+.+|..|+++|+
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~   26 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGV   26 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcC
Confidence            699999999999999999999986

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=97.79  E-value=7e-06  Score=55.68  Aligned_cols=25  Identities=36%  Similarity=0.558  Sum_probs=23.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .||++|||+|++|+.+|..|+++|.
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~g~   26 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEAGK   26 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCC
Confidence            5999999999999999999999875

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.77  E-value=7.5e-06  Score=48.32  Aligned_cols=23  Identities=22%  Similarity=0.328  Sum_probs=21.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ++|+|||||++|+.+|..|.+.+
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~   25 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLAD   25 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHC
T ss_pred             CcEEEECccHHHHHHHHHHHHcC
Confidence            68999999999999999998876

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=97.74  E-value=1.4e-05  Score=54.96  Aligned_cols=25  Identities=28%  Similarity=0.384  Sum_probs=23.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      +.+|++|||+|.+|+.+|..|+++|
T Consensus        23 ~tyD~IIVGsG~aG~vlA~rLae~~   47 (391)
T d1gpea1          23 KTYDYIIAGGGLTGLTVAAKLTENP   47 (391)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTST
T ss_pred             CeeeEEEECcCHHHHHHHHHHHHCC
Confidence            4699999999999999999999876

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.71  E-value=1.7e-05  Score=47.72  Aligned_cols=25  Identities=32%  Similarity=0.405  Sum_probs=22.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..||+|||+|++|+.+|..|++.|.
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~   27 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGW   27 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCC
Confidence            4689999999999999999999875

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=97.54  E-value=1.8e-05  Score=53.87  Aligned_cols=25  Identities=32%  Similarity=0.399  Sum_probs=22.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      +.+|++|||+|.+|+.+|..|++++
T Consensus        16 ~tyD~IIVGsG~aG~vlA~rLse~~   40 (385)
T d1cf3a1          16 RTVDYIIAGGGLTGLTTAARLTENP   40 (385)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTST
T ss_pred             CeEEEEEECcCHHHHHHHHHHHHCC
Confidence            4699999999999999999998865

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.53  E-value=3.9e-05  Score=46.80  Aligned_cols=25  Identities=28%  Similarity=0.509  Sum_probs=22.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +.+|+|||+|++|+.+|..|++.|.
T Consensus         3 ~a~VvIIGgG~~G~e~A~~l~~~g~   27 (183)
T d1d7ya1           3 KAPVVVLGAGLASVSFVAELRQAGY   27 (183)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CCCEEEECccHHHHHHHHHHHhcCC
Confidence            4679999999999999999998874

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=3.4e-05  Score=49.00  Aligned_cols=27  Identities=19%  Similarity=0.359  Sum_probs=23.6

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +.+++++|||+|++|+.+|..|+++|.
T Consensus         2 p~~~~~vIvG~G~aG~~~A~~Lr~~~~   28 (213)
T d1m6ia1           2 PSHVPFLLIGGGTAAFAAARSIRARDP   28 (213)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHST
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCC
Confidence            357899999999999999999988763

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.37  E-value=9.7e-05  Score=42.98  Aligned_cols=26  Identities=19%  Similarity=0.514  Sum_probs=23.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+++|||||+.|+-+|..|++.|.
T Consensus        21 ~p~~v~IiGgG~ig~E~A~~l~~~G~   46 (117)
T d1ebda2          21 VPKSLVVIGGGYIGIELGTAYANFGT   46 (117)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             cCCeEEEECCCccceeeeeeeccccc
Confidence            44789999999999999999999885

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=97.31  E-value=3.2e-05  Score=52.34  Aligned_cols=24  Identities=29%  Similarity=0.411  Sum_probs=21.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      ..+|++|||+|++|+.+|..|+++
T Consensus        25 ~~YD~IIVGsG~aG~vlA~rLae~   48 (351)
T d1ju2a1          25 GSYDYVIVGGGTSGCPLAATLSEK   48 (351)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTTT
T ss_pred             CCccEEEECccHHHHHHHHHhcCC
Confidence            459999999999999999999764

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.29  E-value=0.00011  Score=42.85  Aligned_cols=26  Identities=38%  Similarity=0.602  Sum_probs=23.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+++|||+|+.|+-+|..|++.|.
T Consensus        20 ~p~~vvIiGgG~~G~E~A~~l~~~g~   45 (115)
T d1lvla2          20 LPQHLVVVGGGYIGLELGIAYRKLGA   45 (115)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CCCeEEEECCCHHHHHHHHHHhhccc
Confidence            34689999999999999999999875

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=97.28  E-value=0.00014  Score=42.56  Aligned_cols=25  Identities=36%  Similarity=0.533  Sum_probs=22.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|||+|++|+.+|..|++.|.
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~   45 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGA   45 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCChhhHHHHHHhhcccc
Confidence            4689999999999999999999885

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.25  E-value=0.00014  Score=43.16  Aligned_cols=25  Identities=36%  Similarity=0.583  Sum_probs=23.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|||+|++|+-+|..|+++|.
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~   54 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGV   54 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCeEEEECcchhHHHHHHHhhcccc
Confidence            4789999999999999999999885

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.24  E-value=0.00015  Score=42.86  Aligned_cols=26  Identities=27%  Similarity=0.496  Sum_probs=23.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+|+|||+|+.|+-+|..|++.|.
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~g~   54 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKAGK   54 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECChHHHHHHHHHhhccce
Confidence            34789999999999999999999885

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.23  E-value=0.00012  Score=43.17  Aligned_cols=25  Identities=32%  Similarity=0.468  Sum_probs=23.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|||||++|+-+|..|++.|.
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~   56 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGY   56 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTC
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccc
Confidence            4789999999999999999999885

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.16  E-value=0.0002  Score=42.97  Aligned_cols=26  Identities=23%  Similarity=0.418  Sum_probs=23.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+++|||+|++|+.+|..|++.|+
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~   59 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANM   59 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCc
Confidence            34789999999999999999999885

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.06  E-value=0.00017  Score=44.34  Aligned_cols=22  Identities=23%  Similarity=0.264  Sum_probs=19.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      +|+|||||++|+.+|..|++.+
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~   23 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLH   23 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHC
T ss_pred             EEEEECCcHHHHHHHHHHHhcC
Confidence            4999999999999999998764

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.04  E-value=0.00028  Score=41.57  Aligned_cols=25  Identities=32%  Similarity=0.519  Sum_probs=22.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||||+.|+-+|..|++.|.
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~   46 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGI   46 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTC
T ss_pred             CCEEEEECCchHHHHHHHHHHhccc
Confidence            4689999999999999999998875

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=96.97  E-value=0.00046  Score=39.81  Aligned_cols=25  Identities=16%  Similarity=0.283  Sum_probs=22.7

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|+.|+-+|..|++.|.
T Consensus        22 ~~~vvVvGgG~ig~E~A~~l~~~g~   46 (121)
T d1mo9a2          22 GSTVVVVGGSKTAVEYGCFFNATGR   46 (121)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcch
Confidence            4789999999999999999998874

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.96  E-value=0.00051  Score=38.66  Aligned_cols=26  Identities=27%  Similarity=0.373  Sum_probs=23.5

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..++|+|+|.|.+|+++|.+|.++|.
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~   29 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGV   29 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCC
Confidence            35789999999999999999999985

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.95  E-value=0.00055  Score=40.40  Aligned_cols=26  Identities=31%  Similarity=0.391  Sum_probs=23.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+++|||+|+.|+-+|..|++.|.
T Consensus        19 ~P~~vvIIGgG~iG~E~A~~l~~lG~   44 (122)
T d1h6va2          19 CPGKTLVVGASYVALECAGFLAGIGL   44 (122)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCeEEEECCCccHHHHHHHHhhcCC
Confidence            34689999999999999999999885

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.94  E-value=0.00047  Score=40.41  Aligned_cols=26  Identities=31%  Similarity=0.519  Sum_probs=23.6

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+++|||+|+.|+-+|..|++.|.
T Consensus        21 ~p~~i~IiG~G~ig~E~A~~l~~~G~   46 (119)
T d3lada2          21 VPGKLGVIGAGVIGLELGSVWARLGA   46 (119)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCeEEEECCChHHHHHHHHHHHcCC
Confidence            45789999999999999999999885

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.90  E-value=0.00025  Score=42.10  Aligned_cols=20  Identities=45%  Similarity=0.738  Sum_probs=18.4

Q ss_pred             CEEEECCCHHHHHHHHHHHH
Q 035312           45 PVLIVGAGPVGLVLSILLTK   64 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~   64 (68)
                      +|+|||+|++|+.+|..|++
T Consensus         2 rVvIIGgG~~G~e~A~~l~~   21 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ   21 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT
T ss_pred             eEEEECCcHHHHHHHHHHHc
Confidence            69999999999999999865

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.89  E-value=0.00044  Score=41.59  Aligned_cols=24  Identities=21%  Similarity=0.293  Sum_probs=22.5

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +.|+|||+|..|+.+|..|+++|+
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~   25 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQ   25 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC
Confidence            579999999999999999999986

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.89  E-value=0.00054  Score=40.38  Aligned_cols=26  Identities=27%  Similarity=0.533  Sum_probs=23.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+++|||+|+.|+-+|..|++.|.
T Consensus        22 ~p~~~vIiG~G~ig~E~A~~l~~lG~   47 (122)
T d1v59a2          22 IPKRLTIIGGGIIGLEMGSVYSRLGS   47 (122)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCeEEEECCCchHHHHHHHHHhhCc
Confidence            34689999999999999999999885

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00058  Score=40.24  Aligned_cols=25  Identities=32%  Similarity=0.458  Sum_probs=22.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+++|||+|+.|+-+|..|++.|.
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~   46 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGS   46 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCc
Confidence            4689999999999999999999885

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=96.59  E-value=0.00094  Score=38.80  Aligned_cols=24  Identities=21%  Similarity=0.296  Sum_probs=20.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ..+++|||+|+.|+-+|..+++.|
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~   43 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYK   43 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHC
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcc
Confidence            468999999999999998877644

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.58  E-value=0.00067  Score=40.02  Aligned_cols=25  Identities=36%  Similarity=0.392  Sum_probs=23.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+.|+|||+|-.|..+|..|.++|+
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~   26 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGI   26 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC
Confidence            4689999999999999999999986

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.34  E-value=0.0011  Score=38.91  Aligned_cols=26  Identities=23%  Similarity=0.525  Sum_probs=23.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+++|||+|..|+-+|..+++.|.
T Consensus        24 ~p~~~viiG~G~iglE~A~~~~~~G~   49 (123)
T d1dxla2          24 IPKKLVVIGAGYIGLEMGSVWGRIGS   49 (123)
T ss_dssp             CCSEEEESCCSHHHHHHHHHHHHHTC
T ss_pred             cCCeEEEEccchHHHHHHHHHHhcCC
Confidence            34789999999999999999999875

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=96.32  E-value=0.0017  Score=38.49  Aligned_cols=26  Identities=31%  Similarity=0.578  Sum_probs=23.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+++|||+|+.|+-+|..+++.|.
T Consensus        25 ~p~~vvIiGgG~IG~E~A~~~~~~G~   50 (125)
T d1ojta2          25 VPGKLLIIGGGIIGLEMGTVYSTLGS   50 (125)
T ss_dssp             CCSEEEEESCSHHHHHHHHHHHHHTC
T ss_pred             cCCeEEEECCCHHHHHHHHHhhcCCC
Confidence            34789999999999999999998875

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=96.21  E-value=0.0024  Score=36.75  Aligned_cols=23  Identities=17%  Similarity=0.299  Sum_probs=19.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      ..+++|||+|++|+-+|..|++.
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~   40 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAY   40 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHH
T ss_pred             CCeEEEECCChHHHHHHHHhHhh
Confidence            46899999999999999876653

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.0029  Score=37.53  Aligned_cols=22  Identities=32%  Similarity=0.511  Sum_probs=19.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHH
Q 035312           43 VVPVLIVGAGPVGLVLSILLTK   64 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~   64 (68)
                      ..+++|||+|++|+-+|..|++
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~   58 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGR   58 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHH
Confidence            4689999999999999988864

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.90  E-value=0.0018  Score=38.50  Aligned_cols=26  Identities=27%  Similarity=0.451  Sum_probs=23.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+|+|||||..|+-+|..+++.|.
T Consensus        28 ~gkrVvVIGgG~~g~d~a~~~~r~G~   53 (162)
T d1ps9a2          28 VGNKVAIIGCGGIGFDTAMYLSQPGE   53 (162)
T ss_dssp             CCSEEEEECCHHHHHHHHHHHTCCSS
T ss_pred             cCCceEEEcCchhHHHHHHHHHHcCC
Confidence            45799999999999999999998874

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.62  E-value=0.0053  Score=37.49  Aligned_cols=25  Identities=20%  Similarity=0.295  Sum_probs=22.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||||-+|+=+|..+.+.|.
T Consensus        45 ~~kVvVIGGGdtA~D~A~~a~r~GA   69 (153)
T d1gtea3          45 RGAVIVLGAGDTAFDCATSALRCGA   69 (153)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCChhHHHHHHHHHHcCC
Confidence            4579999999999999999988874

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=95.61  E-value=0.0055  Score=35.92  Aligned_cols=23  Identities=26%  Similarity=0.488  Sum_probs=21.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +|+|||+|-.|...|..|++.|+
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~   24 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGH   24 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCC
Confidence            58999999999999999999986

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.38  E-value=0.0051  Score=38.44  Aligned_cols=23  Identities=35%  Similarity=0.381  Sum_probs=21.3

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .|.|||.|..|+.+|..|+++|+
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~   24 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGH   24 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC
T ss_pred             EEEEECCCHhHHHHHHHHHhCCC
Confidence            38999999999999999999986

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=95.32  E-value=0.0074  Score=36.72  Aligned_cols=26  Identities=31%  Similarity=0.538  Sum_probs=23.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+..|.|||+|-.|.++|+.|+.+|+
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~   29 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGI   29 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCC
Confidence            35689999999999999999998874

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.31  E-value=0.011  Score=34.04  Aligned_cols=24  Identities=21%  Similarity=0.364  Sum_probs=22.1

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ++++|+|+|..|..+|-.|.++|+
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~   24 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGH   24 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC
Confidence            468999999999999999999986

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=95.22  E-value=0.0078  Score=34.28  Aligned_cols=24  Identities=29%  Similarity=0.241  Sum_probs=21.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      ..++|+|||+|.+|+-.|.+|++.
T Consensus        31 ~gK~VlVVG~g~Sa~dia~~l~~~   54 (107)
T d2gv8a2          31 VGESVLVVGGASSANDLVRHLTPV   54 (107)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHTTT
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHh
Confidence            468999999999999999998764

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=95.12  E-value=0.009  Score=36.49  Aligned_cols=26  Identities=19%  Similarity=0.301  Sum_probs=23.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ++..|.|||+|-.|.++|+.|+.+++
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~   31 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALREL   31 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC
Confidence            46889999999999999999888764

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=94.98  E-value=0.0097  Score=35.83  Aligned_cols=24  Identities=29%  Similarity=0.369  Sum_probs=21.3

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..|.|||+|-.|.++|+.|+.+++
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l   25 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKEL   25 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCc
Confidence            479999999999999999988764

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.94  E-value=0.011  Score=35.73  Aligned_cols=26  Identities=35%  Similarity=0.506  Sum_probs=23.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....|.|||+|-.|.++|+.|..+|+
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l   30 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGI   30 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCC
Confidence            45689999999999999999988775

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=94.81  E-value=0.011  Score=35.97  Aligned_cols=24  Identities=29%  Similarity=0.426  Sum_probs=21.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +.|.|||+|-.|.++|+.|..+|+
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~   25 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGV   25 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCC
Confidence            568999999999999999988764

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.80  E-value=0.0073  Score=35.96  Aligned_cols=27  Identities=30%  Similarity=0.389  Sum_probs=23.5

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      -+..+|+|||||..|+.-|..|.+.|.
T Consensus        11 l~gkrvLViGgG~va~~ka~~Ll~~GA   37 (150)
T d1kyqa1          11 LKDKRILLIGGGEVGLTRLYKLMPTGC   37 (150)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTC
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCC
Confidence            356899999999999999999988763

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.75  E-value=0.016  Score=33.06  Aligned_cols=26  Identities=35%  Similarity=0.340  Sum_probs=23.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+.|+|||+|..|..-|..|.+.|.
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga   36 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGA   36 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTB
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC
Confidence            46899999999999999999988763

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=94.74  E-value=0.01  Score=35.91  Aligned_cols=25  Identities=24%  Similarity=0.361  Sum_probs=22.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ..++|+|||+|-+|+-+|+++++.+
T Consensus        31 ~gK~V~VvG~G~Sa~dia~~~~~~~   55 (235)
T d1w4xa2          31 SGQRVGVIGTGSSGIQVSPQIAKQA   55 (235)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHHB
T ss_pred             CCCEEEEECCCccHHHHHHHHHhhh
Confidence            5689999999999999999998764

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=94.67  E-value=0.026  Score=34.93  Aligned_cols=26  Identities=23%  Similarity=0.419  Sum_probs=23.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+..|.|||+|-.|-++|+.|..+|+
T Consensus        19 ~~~KV~IIGaG~VG~~~A~~l~~~~l   44 (160)
T d1i0za1          19 PNNKITVVGVGQVGMACAISILGKSL   44 (160)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCC
Confidence            45799999999999999999999886

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=94.51  E-value=0.02  Score=34.68  Aligned_cols=24  Identities=33%  Similarity=0.614  Sum_probs=21.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..|.|||+|..|-++|+.|..+|+
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l   25 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGI   25 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCC
Confidence            469999999999999999998876

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.49  E-value=0.017  Score=36.06  Aligned_cols=25  Identities=24%  Similarity=0.400  Sum_probs=22.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      -..|+|||+|..|..-|..++++|+
T Consensus         4 IkkvaViGaG~mG~~iA~~~a~~G~   28 (192)
T d1f0ya2           4 VKHVTVIGGGLMGAGIAQVAAATGH   28 (192)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             eEEEEEECcCHHHHHHHHHHHhCCC
Confidence            3689999999999999999999986

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=94.48  E-value=0.019  Score=34.17  Aligned_cols=23  Identities=26%  Similarity=0.508  Sum_probs=20.9

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +|+|||+|-.|.++|+.|+.+++
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l   24 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQL   24 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCC
Confidence            48999999999999999998875

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=94.40  E-value=0.023  Score=34.15  Aligned_cols=24  Identities=29%  Similarity=0.340  Sum_probs=21.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..|.|||+|-.|.++|+.|..+++
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l   25 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQT   25 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCC
Confidence            479999999999999999998875

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=94.37  E-value=0.018  Score=35.66  Aligned_cols=25  Identities=20%  Similarity=0.211  Sum_probs=22.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGIF   68 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~~   68 (68)
                      ..|+|||+|..|..-|..++++|+.
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~   29 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTP   29 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCe
Confidence            5799999999999999999999863

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.29  E-value=0.021  Score=34.22  Aligned_cols=25  Identities=36%  Similarity=0.693  Sum_probs=21.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .-.|+|+|+|+.|+.++..++..|.
T Consensus        27 gd~VlI~G~G~iG~~~~~~a~~~G~   51 (171)
T d1pl8a2          27 GHKVLVCGAGPIGMVTLLVAKAMGA   51 (171)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCccHHHHHHHHHHcCC
Confidence            3469999999999999999888774

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=94.19  E-value=0.026  Score=35.21  Aligned_cols=27  Identities=26%  Similarity=0.372  Sum_probs=22.9

Q ss_pred             cccCEEEECC-CHHHHHHHHHHHHCCCC
Q 035312           42 AVVPVLIVGA-GPVGLVLSILLTKLGIF   68 (68)
Q Consensus        42 ~~~dV~IVGa-G~aGl~~A~~L~~~G~~   68 (68)
                      +..+|+|+|| |..|-++++.|++..+|
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~   50 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLFKLASGEVF   50 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTT
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCccc
Confidence            4468999996 99999999999987653

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.10  E-value=0.027  Score=34.76  Aligned_cols=26  Identities=27%  Similarity=0.520  Sum_probs=22.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+..|.|||+|-.|-++|+.|..+|+
T Consensus        18 ~~~KI~IIGaG~VG~~~A~~l~~~~l   43 (159)
T d2ldxa1          18 SRCKITVVGVGDVGMACAISILLKGL   43 (159)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCC
Confidence            44579999999999999999998875

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.08  E-value=0.025  Score=32.69  Aligned_cols=23  Identities=35%  Similarity=0.556  Sum_probs=21.2

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .|+|+|+|..|...|..|.++|+
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~   24 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGH   24 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC
Confidence            48999999999999999999886

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.06  E-value=0.0099  Score=35.97  Aligned_cols=26  Identities=27%  Similarity=0.470  Sum_probs=22.0

Q ss_pred             ccCEEEECC-CHHHHHHHHHHHHCCCC
Q 035312           43 VVPVLIVGA-GPVGLVLSILLTKLGIF   68 (68)
Q Consensus        43 ~~dV~IVGa-G~aGl~~A~~L~~~G~~   68 (68)
                      ..+|+|||| |..|-++|+.|++.++|
T Consensus         3 p~KV~IiGA~G~VG~~la~~l~~~~~~   29 (154)
T d5mdha1           3 PIRVLVTGAAGQIAYSLLYSIGNGSVF   29 (154)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHTTTTT
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHHHhc
Confidence            358999996 99999999999877653

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=94.03  E-value=0.019  Score=34.66  Aligned_cols=24  Identities=29%  Similarity=0.458  Sum_probs=21.4

Q ss_pred             cCEEEECC-CHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGA-GPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGa-G~aGl~~A~~L~~~G~   67 (68)
                      ..|+|||| |..|-++|+.|+..++
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~~~l   29 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAAGEM   29 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhccc
Confidence            48999997 9999999999988765

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.87  E-value=0.025  Score=34.31  Aligned_cols=23  Identities=43%  Similarity=0.613  Sum_probs=20.6

Q ss_pred             CEEEECC-CHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGA-GPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGa-G~aGl~~A~~L~~~G~   67 (68)
                      +|.|||+ |..|.++|+.|..+++
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l   25 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPF   25 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTT
T ss_pred             EEEEECCCChHHHHHHHHHHhCCc
Confidence            4899996 9999999999998875

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.86  E-value=0.018  Score=34.84  Aligned_cols=23  Identities=39%  Similarity=0.635  Sum_probs=20.8

Q ss_pred             CEEEECC-CHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGA-GPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGa-G~aGl~~A~~L~~~G~   67 (68)
                      .|+|||| |..|.++|+.|..+|+
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~   25 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPL   25 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTT
T ss_pred             eEEEECCCChHHHHHHHHHHhCCc
Confidence            5899996 9999999999998876

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.80  E-value=0.023  Score=34.79  Aligned_cols=23  Identities=43%  Similarity=0.564  Sum_probs=21.0

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +|+|||+|.-|.+.|..|+++|.
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~   24 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGN   24 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC
Confidence            48999999999999999998874

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.75  E-value=0.035  Score=32.84  Aligned_cols=23  Identities=39%  Similarity=0.538  Sum_probs=21.3

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +|.|||.|..|-+.|..|.++|+
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~   25 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGF   25 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTC
T ss_pred             EEEEEccCHHHHHHHHHHHhcCC
Confidence            59999999999999999999885

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=93.61  E-value=0.058  Score=31.53  Aligned_cols=27  Identities=26%  Similarity=0.406  Sum_probs=23.8

Q ss_pred             cccCEEEEC-CCHHHHHHHHHHHHCCCC
Q 035312           42 AVVPVLIVG-AGPVGLVLSILLTKLGIF   68 (68)
Q Consensus        42 ~~~dV~IVG-aG~aGl~~A~~L~~~G~~   68 (68)
                      .-.+|.||| .|.-|.+.|..|.++|+.
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~~~G~~   35 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLRASGYP   35 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTCC
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHHcCCC
Confidence            347999999 699999999999999874

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=93.59  E-value=0.032  Score=33.11  Aligned_cols=25  Identities=40%  Similarity=0.713  Sum_probs=21.0

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .-.|+|+|+|+.|+.++..++..|.
T Consensus        27 g~~vlV~G~G~vG~~~~~~ak~~Ga   51 (170)
T d1e3ja2          27 GTTVLVIGAGPIGLVSVLAAKAYGA   51 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCEEEEEcccccchhhHhhHhhhcc
Confidence            3579999999999999988877763

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.56  E-value=0.028  Score=33.63  Aligned_cols=23  Identities=35%  Similarity=0.434  Sum_probs=20.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +|.|||+|-.|.++|+.|..+++
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l   24 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGF   24 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCC
Confidence            58999999999999999988764

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.53  E-value=0.03  Score=33.73  Aligned_cols=23  Identities=26%  Similarity=0.095  Sum_probs=20.6

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +|.|||+|-.|-++|+.|+.+|+
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~   24 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLD   24 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSC
T ss_pred             EEEEECcCHHHHHHHHHHHhcCc
Confidence            58999999999999999988775

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=93.39  E-value=0.035  Score=33.50  Aligned_cols=25  Identities=40%  Similarity=0.634  Sum_probs=21.3

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .-.|+|+|+|+.|+.+...++..|.
T Consensus        29 G~~VlV~GaG~iG~~~~~~ak~~Ga   53 (182)
T d1vj0a2          29 GKTVVIQGAGPLGLFGVVIARSLGA   53 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTB
T ss_pred             CCEEEEECCCccchhheeccccccc
Confidence            4579999999999999888887763

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=93.37  E-value=0.039  Score=32.70  Aligned_cols=23  Identities=30%  Similarity=0.394  Sum_probs=21.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +|.|||.|..|.+.|..|+++|+
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~   24 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGH   24 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC
T ss_pred             EEEEEeecHHHHHHHHHHHHCCC
Confidence            48999999999999999999886

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.37  E-value=0.046  Score=32.32  Aligned_cols=25  Identities=28%  Similarity=0.300  Sum_probs=21.1

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .-.|+|+|+|+.|+.++..++..|.
T Consensus        28 g~~VlV~GaG~vG~~~~~~ak~~G~   52 (166)
T d1llua2          28 GQWVAISGIGGLGHVAVQYARAMGL   52 (166)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCEEEEeeccccHHHHHHHHHHcCC
Confidence            4569999999999999888877763

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.35  E-value=0.044  Score=33.30  Aligned_cols=25  Identities=24%  Similarity=0.563  Sum_probs=21.8

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +..|.|||+|-.|-++|+.|.++++
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l   27 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNL   27 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC
Confidence            3579999999999999999888764

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=93.33  E-value=0.043  Score=33.39  Aligned_cols=25  Identities=28%  Similarity=0.332  Sum_probs=21.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .-.|+|+|+|+.|+.++..++..|.
T Consensus        28 g~~VlI~GaG~vGl~~~q~ak~~Ga   52 (174)
T d1jqba2          28 GSSVVVIGIGAVGLMGIAGAKLRGA   52 (174)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTC
T ss_pred             CCEEEEEcCCcchhhhhhhhhcccc
Confidence            4579999999999999888887764

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.32  E-value=0.041  Score=34.22  Aligned_cols=25  Identities=40%  Similarity=0.589  Sum_probs=20.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ..-.|+|+|+|+.|+.++..++..|
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~g   49 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLG   49 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhc
Confidence            3458999999999999988887665

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=93.22  E-value=0.036  Score=32.45  Aligned_cols=24  Identities=25%  Similarity=0.371  Sum_probs=21.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      ..++|+|||+|.+.+-.|.+|++-
T Consensus        29 ~gk~V~VvGgG~sA~~~A~~L~~~   52 (126)
T d1fl2a2          29 KGKRVAVIGGGNSGVEAAIDLAGI   52 (126)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHTT
T ss_pred             CCceEEEEeCCHHHHHHHHhhhcc
Confidence            468999999999999999999763

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=93.17  E-value=0.042  Score=34.66  Aligned_cols=26  Identities=31%  Similarity=0.394  Sum_probs=22.8

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ....+|+|+|+|.+|+.++..+.+.|
T Consensus        30 v~pa~V~ViGaGvaG~~A~~~A~~lG   55 (168)
T d1pjca1          30 VKPGKVVILGGGVVGTEAAKMAVGLG   55 (168)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTT
T ss_pred             CCCcEEEEECCChHHHHHHHHHhhCC
Confidence            35689999999999999999888776

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=93.14  E-value=0.029  Score=35.48  Aligned_cols=26  Identities=38%  Similarity=0.505  Sum_probs=23.9

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+..|+|||+|-.|-.+|..|++.|+
T Consensus        29 ~~~~VliiG~GglGs~va~~La~~Gv   54 (247)
T d1jw9b_          29 KDSRVLIVGLGGLGCAASQYLASAGV   54 (247)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcCC
Confidence            45899999999999999999999986

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=93.08  E-value=0.05  Score=32.85  Aligned_cols=26  Identities=23%  Similarity=0.333  Sum_probs=23.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..++|+|+|+|=++-+.++.|.+.|.
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~   42 (170)
T d1nyta1          17 PGLRILLIGAGGASRGVLLPLLSLDC   42 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCcHHHHHHHHHhcccce
Confidence            45789999999999999999998874

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=93.01  E-value=0.05  Score=33.24  Aligned_cols=25  Identities=28%  Similarity=0.234  Sum_probs=21.4

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .-.|+|+|+|+.|+.++..++..|.
T Consensus        29 G~~VlV~G~G~iGl~a~~~ak~~Ga   53 (174)
T d1e3ia2          29 GSTCAVFGLGCVGLSAIIGCKIAGA   53 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCC
Confidence            3579999999999999998887763

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=92.96  E-value=0.047  Score=33.06  Aligned_cols=26  Identities=15%  Similarity=0.312  Sum_probs=23.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+.+|+|+|+|=++-+.++.|.+.|.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~   41 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGF   41 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC
Confidence            45789999999999999999999885

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.80  E-value=0.057  Score=31.64  Aligned_cols=24  Identities=21%  Similarity=0.117  Sum_probs=20.5

Q ss_pred             cCEEEE--CCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIV--GAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IV--GaG~aGl~~A~~L~~~G~   67 (68)
                      ..++|+  |+|..|+.+|..|+++|.
T Consensus        40 ~~vvi~d~ggg~ig~e~A~~la~~G~   65 (156)
T d1djqa2          40 KRVVILNADTYFMAPSLAEKLATAGH   65 (156)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTC
T ss_pred             CceEEEecCCChHHHHHHHHHHHcCC
Confidence            455555  999999999999999985

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=92.76  E-value=0.06  Score=32.49  Aligned_cols=23  Identities=35%  Similarity=0.443  Sum_probs=20.8

Q ss_pred             CEEEEC-CCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVG-AGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVG-aG~aGl~~A~~L~~~G~   67 (68)
                      .|.||| +|..|-++|+.|..+++
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l   25 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDI   25 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCC
Confidence            589999 69999999999998875

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=92.72  E-value=0.034  Score=33.89  Aligned_cols=22  Identities=41%  Similarity=0.696  Sum_probs=18.6

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .|+|||.|-.||.+|..++ +|+
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~g~   23 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-LQN   23 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTS
T ss_pred             EEEEECCChhHHHHHHHHH-CCC
Confidence            4899999999999998776 464

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.71  E-value=0.051  Score=32.69  Aligned_cols=26  Identities=27%  Similarity=0.350  Sum_probs=21.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..-+|+|+|+|+.|+.++..++..|.
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~   53 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGA   53 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEeCCCHHHhhhhhccccccc
Confidence            34679999999999999988877663

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=92.68  E-value=0.062  Score=34.28  Aligned_cols=26  Identities=31%  Similarity=0.440  Sum_probs=22.2

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ....+|+|+|+|.+|+.++.-..+.|
T Consensus        27 V~pa~VvViGaGvaG~~Aa~~A~~lG   52 (183)
T d1l7da1          27 VPPARVLVFGVGVAGLQAIATAKRLG   52 (183)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTT
T ss_pred             cCCcEEEEEcCcHHHHHHHHHHHHcC
Confidence            34579999999999999998887766

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.56  E-value=0.056  Score=30.82  Aligned_cols=23  Identities=35%  Similarity=0.589  Sum_probs=20.5

Q ss_pred             CEEEE-CCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIV-GAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IV-GaG~aGl~~A~~L~~~G~   67 (68)
                      .|+|| |+|--|.+.|..|+++|+
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~   25 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGH   25 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTC
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCC
Confidence            37899 679999999999999986

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=92.55  E-value=0.064  Score=32.67  Aligned_cols=26  Identities=15%  Similarity=0.226  Sum_probs=23.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..++|+|+|+|-++-+.++.|.+.|.
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~   42 (182)
T d1vi2a1          17 KGKTMVLLGAGGASTAIGAQGAIEGL   42 (182)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCcHHHHHHHHHHhhcCC
Confidence            45799999999999999999998875

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=92.53  E-value=0.04  Score=32.19  Aligned_cols=24  Identities=17%  Similarity=0.375  Sum_probs=21.3

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      ...+|+|||+|-+++-.|..|++.
T Consensus        26 ~~k~V~VvGgGdsA~e~A~~L~~~   49 (126)
T d1trba2          26 RNQKVAVIGGGNTAVEEALYLSNI   49 (126)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhc
Confidence            458999999999999999999764

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=92.50  E-value=0.038  Score=34.38  Aligned_cols=24  Identities=25%  Similarity=0.473  Sum_probs=21.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .+|+|+|+|--|.+.|..|+++|.
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~   31 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCR   31 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEE
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCC
Confidence            579999999999999999998874

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.36  E-value=0.043  Score=32.59  Aligned_cols=23  Identities=26%  Similarity=0.443  Sum_probs=20.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHHH
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTK   64 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~   64 (68)
                      ..++|+|||+|-+.+-.|.+|++
T Consensus        33 rgk~V~VvGgGdsA~e~A~~L~~   55 (130)
T d1vdca2          33 RNKPLAVIGGGDSAMEEANFLTK   55 (130)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTT
T ss_pred             CCCEEEEEcCchHHHHHHHHHhC
Confidence            46899999999999999999975

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=92.24  E-value=0.08  Score=31.46  Aligned_cols=26  Identities=27%  Similarity=0.277  Sum_probs=21.4

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....|+|+|+|+.|+.++..++..|.
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga   55 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGA   55 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccc
Confidence            34679999999999999888777764

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.92  E-value=0.068  Score=31.85  Aligned_cols=25  Identities=28%  Similarity=0.392  Sum_probs=20.5

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...|+|+|+|+.|+.++..++..|.
T Consensus        28 g~~vlI~GaG~vG~~a~q~ak~~G~   52 (168)
T d1piwa2          28 GKKVGIVGLGGIGSMGTLISKAMGA   52 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CCEEEEECCCCcchhHHHHhhhccc
Confidence            4579999999999998887766663

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=91.56  E-value=0.08  Score=32.09  Aligned_cols=26  Identities=35%  Similarity=0.520  Sum_probs=23.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ....|+|||+|-.|-..+..|..+|.
T Consensus        23 ~~~~ilviGaG~~g~~v~~~L~~~g~   48 (159)
T d1gpja2          23 HDKTVLVVGAGEMGKTVAKSLVDRGV   48 (159)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCC
T ss_pred             ccCeEEEECCCHHHHHHHHHHHhcCC
Confidence            46889999999999999999988775

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=91.37  E-value=0.099  Score=30.93  Aligned_cols=23  Identities=26%  Similarity=0.394  Sum_probs=19.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      -.|+|+|+|+.|+.++..++..|
T Consensus        30 ~~VlI~G~Gg~g~~~~~~~~~~g   52 (175)
T d1cdoa2          30 STCAVFGLGAVGLAAVMGCHSAG   52 (175)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT
T ss_pred             CEEEEEecCCccchHHHHHHHHh
Confidence            45899999999999998887765

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=91.27  E-value=0.099  Score=31.72  Aligned_cols=24  Identities=25%  Similarity=0.403  Sum_probs=20.8

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      --|+|+|+|+.|+.+...++..|.
T Consensus        31 ~tVlI~G~GgvGl~ai~~ak~~G~   54 (176)
T d1d1ta2          31 STCVVFGLGGVGLSVIMGCKSAGA   54 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CEEEEECCCchhHHHHHHHHHcCC
Confidence            459999999999999998887763

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.20  E-value=0.084  Score=30.83  Aligned_cols=25  Identities=28%  Similarity=0.298  Sum_probs=20.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...|+|+|+|+.|+.++..++..|.
T Consensus        28 g~~vlv~G~G~iG~~a~~~a~~~g~   52 (168)
T d1rjwa2          28 GEWVAIYGIGGLGHVAVQYAKAMGL   52 (168)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTC
T ss_pred             CCEEEEeecccchhhhhHHHhcCCC
Confidence            4579999999999998888777663

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=91.19  E-value=0.083  Score=31.97  Aligned_cols=25  Identities=20%  Similarity=0.238  Sum_probs=20.9

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .-.|+|+|+|+.|+.+...++..|.
T Consensus        28 G~~VlV~GaGgvGl~a~~~ak~~G~   52 (174)
T d1p0fa2          28 GSTCAVFGLGGVGFSAIVGCKAAGA   52 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTC
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCC
Confidence            3569999999999999988877663

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=90.77  E-value=0.16  Score=30.50  Aligned_cols=25  Identities=16%  Similarity=0.344  Sum_probs=23.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +.+|.|||-|..|...|..|.++|+
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~   26 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGF   26 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCC
Confidence            4689999999999999999999986

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=90.48  E-value=0.12  Score=30.81  Aligned_cols=24  Identities=33%  Similarity=0.398  Sum_probs=20.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ...|+|+|+|+.|+.++..++..|
T Consensus        33 g~~vli~GaG~vG~~~~~~a~~~g   56 (172)
T d1h2ba2          33 GAYVAIVGVGGLGHIAVQLLKVMT   56 (172)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHC
T ss_pred             CCEEEEeCCChHHHHHHHHHHhhc
Confidence            456999999999999888877665

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=90.39  E-value=0.14  Score=31.46  Aligned_cols=25  Identities=36%  Similarity=0.415  Sum_probs=22.1

Q ss_pred             ccCEEEECC-CHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGA-GPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGa-G~aGl~~A~~L~~~G~   67 (68)
                      +..|+|+|| |..|...+..|.++|+
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~   28 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGH   28 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC
Confidence            456999997 9999999999999886

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=90.31  E-value=0.14  Score=29.92  Aligned_cols=23  Identities=30%  Similarity=0.398  Sum_probs=21.4

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +|.|||.|-.|...|..|.++|+
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~   24 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGV   24 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTC
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCC
Confidence            48999999999999999999986

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.03  E-value=0.16  Score=36.41  Aligned_cols=27  Identities=15%  Similarity=0.330  Sum_probs=24.1

Q ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           41 EAVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        41 ~~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +.++||+|+|-|+.=..+|..|++.|.
T Consensus         4 P~e~DVII~GTGL~ESILAaAlSr~Gk   30 (491)
T d1vg0a1           4 PSDFDVIVIGTGLPESIIAAACSRSGQ   30 (491)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCccCEEEECCChHHHHHHHHHHhcCC
Confidence            467999999999999888899999885

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=89.66  E-value=0.17  Score=29.99  Aligned_cols=24  Identities=25%  Similarity=0.354  Sum_probs=20.6

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      --|+|+|+|..|+.++..++..|.
T Consensus        30 dtVlV~GaGG~G~~~~~~~~~~g~   53 (176)
T d2jhfa2          30 STCAVFGLGGVGLSVIMGCKAAGA   53 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CEEEEECCCCcHHHHHHHHHHcCC
Confidence            349999999999999999988763

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.39  E-value=0.17  Score=31.48  Aligned_cols=22  Identities=23%  Similarity=0.427  Sum_probs=19.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHH
Q 035312           42 AVVPVLIVGAGPVGLVLSILLT   63 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~   63 (68)
                      ...+|+|||+|-+++=+|..|.
T Consensus        38 ~gk~VvVIGgGNvAlD~AR~ll   59 (216)
T d1lqta1          38 SGARAVVIGNGNVALDVARILL   59 (216)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHH
T ss_pred             cCceEEEECCCchhHhhhhhhc
Confidence            3579999999999999998765

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=89.28  E-value=0.19  Score=30.41  Aligned_cols=25  Identities=28%  Similarity=0.430  Sum_probs=22.5

Q ss_pred             ccCEEEECC-CHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGA-GPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGa-G~aGl~~A~~L~~~G~   67 (68)
                      +++|+|+|| |..|-.++..|.++|+
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~   28 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGH   28 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC
Confidence            578999998 9999999999998886

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=89.17  E-value=0.13  Score=31.02  Aligned_cols=25  Identities=24%  Similarity=0.264  Sum_probs=21.2

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ..++|+|+|+|=++-++++.|++.|
T Consensus        17 ~~k~vlIlGaGG~arai~~aL~~~~   41 (177)
T d1nvta1          17 KDKNIVIYGAGGAARAVAFELAKDN   41 (177)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTSSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccc
Confidence            4578999999999999999886654

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=88.76  E-value=0.21  Score=29.89  Aligned_cols=26  Identities=23%  Similarity=0.445  Sum_probs=21.6

Q ss_pred             cccCEEEECCCH-----------HHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGP-----------VGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~-----------aGl~~A~~L~~~G~   67 (68)
                      ....|+|+|+||           ++..++..|++.|+
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~   39 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGY   39 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCC
Confidence            346899999997           77888888988886

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=88.67  E-value=0.18  Score=30.30  Aligned_cols=20  Identities=40%  Similarity=0.747  Sum_probs=17.3

Q ss_pred             CEEEEC-CCHHHHHHHHHHHH
Q 035312           45 PVLIVG-AGPVGLVLSILLTK   64 (68)
Q Consensus        45 dV~IVG-aG~aGl~~A~~L~~   64 (68)
                      +|.||| +|..|-++|+.|..
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~   22 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKT   22 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH
T ss_pred             EEEEEcCCChHHHHHHHHHHh
Confidence            589999 59999999998864

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.62  E-value=0.25  Score=31.58  Aligned_cols=26  Identities=27%  Similarity=0.328  Sum_probs=24.0

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +.+.|+|||-|..|-+-|+.|+.+|+
T Consensus        15 k~k~IaViGYGsQG~AhAlNLrDSG~   40 (182)
T d1np3a2          15 QGKKVAIIGYGSQGHAHACNLKDSGV   40 (182)
T ss_dssp             HTSCEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEEeeCcHhHHHHhhhhhcCC
Confidence            45899999999999999999999986

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=88.53  E-value=0.29  Score=28.41  Aligned_cols=24  Identities=13%  Similarity=0.212  Sum_probs=21.7

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      -+|+|+|.|..|..++-.|.++|.
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~   27 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQ   27 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCC
Confidence            469999999999999999998875

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=88.17  E-value=0.066  Score=31.32  Aligned_cols=22  Identities=27%  Similarity=0.261  Sum_probs=17.8

Q ss_pred             cccCEEEECCCHHHHHHHHHHH
Q 035312           42 AVVPVLIVGAGPVGLVLSILLT   63 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~   63 (68)
                      .+.+|+|+|||-+|..++.++.
T Consensus         2 ~~~~v~I~GaG~~G~~l~~~l~   23 (126)
T d2dt5a2           2 RKWGLCIVGMGRLGSALADYPG   23 (126)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSC
T ss_pred             CCceEEEEcCCHHHHHHHHhHh
Confidence            3578999999999988776553

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.17  E-value=0.21  Score=31.28  Aligned_cols=24  Identities=25%  Similarity=0.375  Sum_probs=21.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKL   65 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~   65 (68)
                      ...+|+|||+|-.++=+|..|.+.
T Consensus        38 ~gk~VvVIGgGNVAlD~aR~l~r~   61 (225)
T d1cjca1          38 SCDTAVILGQGNVALDVARILLTP   61 (225)
T ss_dssp             TSSEEEEESCSHHHHHHHHHHHSC
T ss_pred             cCceEEEECCchhHHHHHHHHhcC
Confidence            358999999999999999988773

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=88.08  E-value=0.013  Score=36.54  Aligned_cols=26  Identities=23%  Similarity=0.166  Sum_probs=22.7

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...+|+|||+|..|+-+|..|++.|.
T Consensus       179 ~~~~vvViGgG~~g~e~A~~l~~~g~  204 (233)
T d1djqa3         179 AEAPRLIADATFTGHRVAREIEEANP  204 (233)
T ss_dssp             GTSCCCHHHHHHHHHHHHHTTTSSCT
T ss_pred             cCCceeEecCchHHHHHHHHHHhcCC
Confidence            34789999999999999999988764

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=88.04  E-value=0.32  Score=28.85  Aligned_cols=24  Identities=29%  Similarity=0.439  Sum_probs=21.9

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGIF   68 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~~   68 (68)
                      +|-|||-|..|...|..|.++|+.
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~~   26 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGFK   26 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCC
T ss_pred             EEEEEeehHHHHHHHHHHHHCCCe
Confidence            488999999999999999999873

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=87.21  E-value=0.26  Score=29.58  Aligned_cols=26  Identities=35%  Similarity=0.567  Sum_probs=21.4

Q ss_pred             cccCEEEECCCH-----------HHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGAGP-----------VGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGaG~-----------aGl~~A~~L~~~G~   67 (68)
                      ....|+|+|+||           ++..+...|++.|+
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~   42 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGY   42 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCC
Confidence            457899999998           67788888888876

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=87.09  E-value=0.26  Score=28.87  Aligned_cols=23  Identities=26%  Similarity=0.351  Sum_probs=19.4

Q ss_pred             cCEEEECCCHHHHHHHHHHHHCC
Q 035312           44 VPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        44 ~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      -.|+|+|+|..|+.+...++..|
T Consensus        30 ~tVlI~GaGGvG~~aiq~ak~~G   52 (176)
T d2fzwa2          30 SVCAVFGLGGVGLAVIMGCKVAG   52 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHT
T ss_pred             CEEEEecchhHHHHHHHHHHHHh
Confidence            45899999999999988877766

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=86.50  E-value=0.26  Score=29.07  Aligned_cols=23  Identities=35%  Similarity=0.388  Sum_probs=21.3

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      +|.|||-|..|...|..|.++|+
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~   24 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGY   24 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC
T ss_pred             EEEEEehhHHHHHHHHHHHHCCC
Confidence            38899999999999999999986

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=86.38  E-value=0.29  Score=28.67  Aligned_cols=25  Identities=24%  Similarity=0.379  Sum_probs=20.1

Q ss_pred             ccCEEEECC-CHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGA-GPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGa-G~aGl~~A~~L~~~G~   67 (68)
                      .-.|+|+|+ |+.|+.++..++..|.
T Consensus        28 g~~vlV~G~~G~vG~~~~~~~~~~g~   53 (170)
T d1jvba2          28 TKTLLVVGAGGGLGTMAVQIAKAVSG   53 (170)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTC
T ss_pred             CCEEEEEeccccceeeeeeccccccc
Confidence            356999995 9999999888776663

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=86.31  E-value=0.44  Score=27.30  Aligned_cols=25  Identities=28%  Similarity=0.630  Sum_probs=22.6

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ...|.|+|+|--|.++|....+.|+
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~   35 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGV   35 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTC
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCC
Confidence            4679999999999999999998886

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.02  E-value=0.45  Score=28.48  Aligned_cols=25  Identities=32%  Similarity=0.432  Sum_probs=21.8

Q ss_pred             ccCEEEECC-CHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGA-GPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGa-G~aGl~~A~~L~~~G~   67 (68)
                      .++|+|+|| |..|-..+..|.++|+
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~   28 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGY   28 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcC
Confidence            367999996 9999999999988885

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.08  E-value=0.54  Score=27.98  Aligned_cols=25  Identities=28%  Similarity=0.182  Sum_probs=22.1

Q ss_pred             ccCEEEECC-CHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGA-GPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGa-G~aGl~~A~~L~~~G~   67 (68)
                      .+.|+|+|| |..|-.+.-+|.++|.
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~   27 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPT   27 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC
Confidence            368999999 9999999999988874

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=84.44  E-value=0.66  Score=29.54  Aligned_cols=26  Identities=27%  Similarity=0.377  Sum_probs=23.1

Q ss_pred             cccCEEEECC-CHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVGA-GPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVGa-G~aGl~~A~~L~~~G~   67 (68)
                      +++.|+|+|| |..|-..+-.|.++|+
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~   28 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGH   28 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCC
Confidence            4678999997 9999999999998886

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.36  E-value=0.4  Score=28.30  Aligned_cols=23  Identities=26%  Similarity=0.476  Sum_probs=21.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCC
Q 035312           45 PVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        45 dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      .|.|||-|..|...|..|.++|+
T Consensus         3 kIg~IGlG~MG~~iA~~L~~~g~   25 (162)
T d3cuma2           3 QIAFIGLGHMGAPMATNLLKAGY   25 (162)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC
T ss_pred             EEEEEEEHHHHHHHHHHHHHCCC
Confidence            59999999999999999999986

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=82.43  E-value=0.42  Score=28.78  Aligned_cols=25  Identities=28%  Similarity=0.248  Sum_probs=21.1

Q ss_pred             cccCEEEECCCHHHHHHHHHHHHCC
Q 035312           42 AVVPVLIVGAGPVGLVLSILLTKLG   66 (68)
Q Consensus        42 ~~~dV~IVGaG~aGl~~A~~L~~~G   66 (68)
                      ..++|+|+|+|=++-++++.|.+.+
T Consensus        17 ~~k~vlIlGaGGaarai~~aL~~~~   41 (171)
T d1p77a1          17 PNQHVLILGAGGATKGVLLPLLQAQ   41 (171)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTT
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccC
Confidence            4578999999999999999887643

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=81.73  E-value=0.81  Score=27.47  Aligned_cols=26  Identities=27%  Similarity=0.457  Sum_probs=22.9

Q ss_pred             cccCEEEEC-CCHHHHHHHHHHHHCCC
Q 035312           42 AVVPVLIVG-AGPVGLVLSILLTKLGI   67 (68)
Q Consensus        42 ~~~dV~IVG-aG~aGl~~A~~L~~~G~   67 (68)
                      ..+.|+|.| +|-.|..+|..|+++|.
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~   48 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGA   48 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhcc
Confidence            468899999 58899999999999985

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.29  E-value=0.46  Score=32.90  Aligned_cols=25  Identities=36%  Similarity=0.491  Sum_probs=23.2

Q ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGAGPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGaG~aGl~~A~~L~~~G~   67 (68)
                      ..+|+|||+|-.|..+|..|++.|+
T Consensus        37 ~~kVlvvG~GglG~ei~k~L~~~Gv   61 (426)
T d1yovb1          37 TCKVLVIGAGGLGCELLKNLALSGF   61 (426)
T ss_dssp             HCCEEEECSSTTHHHHHHHHHTTTC
T ss_pred             cCeEEEECCCHHHHHHHHHHHHcCC
Confidence            5789999999999999999999886

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.78  E-value=1.1  Score=26.30  Aligned_cols=24  Identities=42%  Similarity=0.511  Sum_probs=20.1

Q ss_pred             ccCEEEECC-CHHHHHHHHHHHHCC
Q 035312           43 VVPVLIVGA-GPVGLVLSILLTKLG   66 (68)
Q Consensus        43 ~~dV~IVGa-G~aGl~~A~~L~~~G   66 (68)
                      +-+|+|||+ |.+|..+...|.+++
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~   26 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERD   26 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcC
Confidence            367999999 999999988887654

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=80.69  E-value=0.87  Score=28.64  Aligned_cols=25  Identities=32%  Similarity=0.403  Sum_probs=22.2

Q ss_pred             ccCEEEECC-CHHHHHHHHHHHHCCC
Q 035312           43 VVPVLIVGA-GPVGLVLSILLTKLGI   67 (68)
Q Consensus        43 ~~dV~IVGa-G~aGl~~A~~L~~~G~   67 (68)
                      .+.|+|.|| |..|..++..|.++|+
T Consensus         8 ~KkILVTG~tGfIGs~lv~~Ll~~g~   33 (356)
T d1rkxa_           8 GKRVFVTGHTGFKGGWLSLWLQTMGA   33 (356)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC
Confidence            478999995 8999999999999885