Citrus Sinensis ID: 035336

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60-------
Protein Sequence
MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRAQVRFPFL
Secondary Structure (PSIPRED)
cccccccEEEEEccccccccccccccccccEEEEEEEEEccccEEEccEEEEEEEHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEcccccccccEEEcccccEEEEEEEEEccccccccccEEEEEEHHHHHHEEcccc
Coil and Loop (DISEMBL)
mqneegqnmdlyiprkcsatnrlitskdhaAVQINIghvdadgiytgqfSTFALCGFVRAQVRFPFL
Flexible Loop (DISEMBL)
mqneegqnmdlyiPRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRAQVRFPFL
Low Complexity Region (SEG)
MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRAQVRFPFL
Disordered region (IsUnstruct)
**********LYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRAQVRF***
Disordered Region (DISOPRED)
****EGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRAQVRFPFL
Disordered Region (DISEMBL)
********MDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRAQVRFPFL
Disordered Region (DISPRO)
*****GQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRAQVRFPFL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRAQVRFPFL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	67	2.2.26 [Sep-21-2011]
Q3E902	82	40S ribosomal protein S21	yes	no	0.910	0.743	0.852	2e-26
Q9M337	82	40S ribosomal protein S21	yes	no	0.910	0.743	0.786	1e-24
Q41852	81	40S ribosomal protein S21	N/A	no	0.910	0.753	0.770	3e-24
P35687	82	40S ribosomal protein S21	yes	no	0.910	0.743	0.770	5e-24
Q9SMI2	82	40S ribosomal protein S21	N/A	no	0.895	0.731	0.737	2e-21
Q54BN4	78	40S ribosomal protein S21	yes	no	0.820	0.705	0.690	3e-18
Q4WI01	88	40S ribosomal protein S21	yes	no	0.910	0.693	0.606	4e-18
Q86CT3	85	40S ribosomal protein S21	N/A	no	0.880	0.694	0.583	1e-15
Q7ZUG5	81	40S ribosomal protein S21	yes	no	0.880	0.728	0.583	1e-15
Q90YQ2	83	40S ribosomal protein S21	N/A	no	0.880	0.710	0.583	1e-15

>sp|Q3E902|RS212_ARATH 40S ribosomal protein S21-2 OS=Arabidopsis thaliana GN=RPS21C PE=3 SV=2

 Score =  117 bits (293), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 52/61 (85%), Positives = 59/61 (96%)

Query: 1  MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRA 60
          MQNEEGQ  +LYIPRKCSATNRLITSKDHA+VQ+NIGH+DA+G+YTGQF+TFALCGFVRA
Sbjct: 1  MQNEEGQVTELYIPRKCSATNRLITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRA 60

Query: 61 Q 61
          Q
Sbjct: 61 Q 61

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M337|RS211_ARATH 40S ribosomal protein S21-1 OS=Arabidopsis thaliana GN=RPS21B PE=2 SV=1

 Score =  111 bits (277), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 48/61 (78%), Positives = 58/61 (95%)

Query: 1  MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRA 60
          M+N+ GQ  +LYIPRKCSATNR+ITSKDHA+VQ+NIGH+DA+G+YTGQF+TFALCGFVRA
Sbjct: 1  MENDAGQVTELYIPRKCSATNRMITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRA 60

Query: 61 Q 61
          Q
Sbjct: 61 Q 61

Arabidopsis thaliana (taxid: 3702)

>sp|Q41852|RS21_MAIZE 40S ribosomal protein S21 OS=Zea mays GN=RPS21 PE=3 SV=1

 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 47/61 (77%), Positives = 57/61 (93%)

Query: 1  MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRA 60
          MQNEEG+ +DLY+PRKCSATNR+IT+KDHA+VQINIGH+DA+G+Y G F+TFAL GFVRA
Sbjct: 1  MQNEEGKTVDLYVPRKCSATNRIITAKDHASVQINIGHLDANGLYDGHFTTFALSGFVRA 60

Query: 61 Q 61
          Q
Sbjct: 61 Q 61

Zea mays (taxid: 4577)

>sp|P35687|RS21_ORYSJ 40S ribosomal protein S21 OS=Oryza sativa subsp. japonica GN=RPS21 PE=3 SV=1

 Score =  109 bits (273), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 47/61 (77%), Positives = 57/61 (93%)

Query: 1  MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRA 60
          MQNEEGQ +DLY+PRKCSATNR+IT+KDHA+VQINIGHVD +G+Y G+F+TFAL GF+RA
Sbjct: 1  MQNEEGQMVDLYVPRKCSATNRIITAKDHASVQINIGHVDENGLYDGRFTTFALSGFIRA 60

Query: 61 Q 61
          Q
Sbjct: 61 Q 61

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SMI2|RS21_CYAPA 40S ribosomal protein S21 OS=Cyanophora paradoxa GN=RPS21 PE=3 SV=1

 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 45/61 (73%), Positives = 56/61 (91%), Gaps = 1/61 (1%)

Query: 1  MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDAD-GIYTGQFSTFALCGFVR 59
          MQN+EG+ +DLYIPRKCSATNRLI++ DHAAVQIN+GHVD + G+YTG ++TFALCGFVR
Sbjct: 1  MQNDEGKIVDLYIPRKCSATNRLISATDHAAVQINVGHVDPNSGLYTGDYTTFALCGFVR 60

Query: 60 A 60
          +
Sbjct: 61 S 61

Cyanophora paradoxa (taxid: 2762)

>sp|Q54BN4|RS21_DICDI 40S ribosomal protein S21 OS=Dictyostelium discoideum GN=rps21 PE=3 SV=1

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 38/55 (69%), Positives = 49/55 (89%)

Query: 5  EGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVR 59
          + +N++LY PRKCSATNRLIT+KDHA+VQINIGHV+A+GIY G+ + FA CGF+R
Sbjct: 2  DSKNVELYTPRKCSATNRLITAKDHASVQINIGHVNAEGIYNGEQTIFAFCGFLR 56

Dictyostelium discoideum (taxid: 44689)

>sp|Q4WI01|RS21_ASPFU 40S ribosomal protein S21 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rps21 PE=3 SV=1

 Score = 90.1 bits (222), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 37/61 (60%), Positives = 52/61 (85%)

Query: 1  MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRA 60
          M+NE+G+ +DLY+PRKCSATNR+I + DHA+VQI+I  VD +G YTG+  ++ALCGF+RA
Sbjct: 1  MENEKGEIVDLYVPRKCSATNRIIKANDHASVQISIAKVDENGRYTGENQSYALCGFIRA 60

Query: 61 Q 61
          +
Sbjct: 61 R 61

Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Has a physiological role leading to 18S rRNA stability.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

>sp|Q86CT3|RS21_BRABE 40S ribosomal protein S21 OS=Branchiostoma belcheri GN=RPS21 PE=3 SV=1

 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 48/60 (80%), Gaps = 1/60 (1%)

Query: 1  MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVD-ADGIYTGQFSTFALCGFVR 59
          MQN+ G+ +DLYIPRKCS+TNR+I +KDHA++QIN   VD   G  TGQ+ T+A+CG++R
Sbjct: 1  MQNDAGEVVDLYIPRKCSSTNRIIGAKDHASIQINFAEVDPTTGRMTGQYKTYAICGYIR 60

Branchiostoma belcheri (taxid: 7741)

>sp|Q7ZUG5|RS21_DANRE 40S ribosomal protein S21 OS=Danio rerio GN=rps21 PE=3 SV=1

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 48/60 (80%), Gaps = 1/60 (1%)

Query: 1  MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVD-ADGIYTGQFSTFALCGFVR 59
          MQN+ G+ +DLY+PRKCSA+NR+I +KDHA++QINI  VD   G + GQF T+A+CG +R
Sbjct: 1  MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQINIAEVDRVTGRFNGQFKTYAICGAIR 60

Danio rerio (taxid: 7955)

>sp|Q90YQ2|RS21_ICTPU 40S ribosomal protein S21 OS=Ictalurus punctatus GN=rps21 PE=3 SV=1

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 48/60 (80%), Gaps = 1/60 (1%)

Query: 1  MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVD-ADGIYTGQFSTFALCGFVR 59
          MQN+ G+ +DLY+PRKCSA+NR+I +KDHA++QINI  VD   G + GQF T+A+CG +R
Sbjct: 1  MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQINIAEVDKVTGRFNGQFKTYAICGAIR 60

Ictalurus punctatus (taxid: 7998)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	67
225432306	82	PREDICTED: 40S ribosomal protein S21-2 i	0.910	0.743	0.934	1e-27
255542722	82	40S ribosomal protein S21e, putative [Ri	0.910	0.743	0.918	1e-26
224123084	82	predicted protein [Populus trichocarpa]	0.910	0.743	0.918	1e-26
330318594	82	40S ribosomal protein s21e [Camellia sin	0.910	0.743	0.885	2e-26
225450765	82	PREDICTED: 40S ribosomal protein S21 iso	0.910	0.743	0.901	2e-26
147778296	82	hypothetical protein VITISV_033219 [Viti	0.910	0.743	0.885	3e-26
118484082	82	unknown [Populus trichocarpa]	0.910	0.743	0.901	3e-26
257815606	82	putative 40S ribosomal protein S21e [Jat	0.910	0.743	0.901	3e-26
297808753	82	40S ribosomal protein S21 [Arabidopsis l	0.910	0.743	0.852	3e-25
116778639	81	unknown [Picea sitchensis] gi|116781585|	0.910	0.753	0.868	3e-25

>gi|225432306|ref|XP_002273516.1| PREDICTED: 40S ribosomal protein S21-2 isoform 1 [Vitis vinifera] gi|147862660|emb|CAN83594.1| hypothetical protein VITISV_037724 [Vitis vinifera] gi|297736874|emb|CBI26075.3| unnamed protein product [Vitis vinifera]

 Score =  126 bits (317), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/61 (93%), Positives = 60/61 (98%)

Query: 1  MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRA 60
          MQNEEGQNMDLYIPRKCSATNRLITSKDHA+VQINIGHVD DG++TGQFSTFALCGFVRA
Sbjct: 1  MQNEEGQNMDLYIPRKCSATNRLITSKDHASVQINIGHVDEDGVFTGQFSTFALCGFVRA 60

Query: 61 Q 61
          Q
Sbjct: 61 Q 61

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542722|ref|XP_002512424.1| 40S ribosomal protein S21e, putative [Ricinus communis] gi|223548385|gb|EEF49876.1| 40S ribosomal protein S21e, putative [Ricinus communis] gi|313586443|gb|ADR71232.1| 40S ribosomal protein S21A [Hevea brasiliensis]

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/61 (91%), Positives = 60/61 (98%)

Query: 1  MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRA 60
          MQNEEGQNMDLYIPRKCSATNRLITSKDHA+VQINIGH+DA+G YTGQF+TFALCGFVRA
Sbjct: 1  MQNEEGQNMDLYIPRKCSATNRLITSKDHASVQINIGHLDANGHYTGQFTTFALCGFVRA 60

Query: 61 Q 61
          Q
Sbjct: 61 Q 61

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123084|ref|XP_002318991.1| predicted protein [Populus trichocarpa] gi|224123806|ref|XP_002330213.1| predicted protein [Populus trichocarpa] gi|118484150|gb|ABK93958.1| unknown [Populus trichocarpa] gi|118484444|gb|ABK94098.1| unknown [Populus trichocarpa] gi|118484720|gb|ABK94229.1| unknown [Populus trichocarpa] gi|222857367|gb|EEE94914.1| predicted protein [Populus trichocarpa] gi|222871669|gb|EEF08800.1| predicted protein [Populus trichocarpa]

 Score =  123 bits (308), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/61 (91%), Positives = 59/61 (96%)

Query: 1  MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRA 60
          MQNEEGQNMDLYIPRKCSATNRLITSKDHA+VQINIGH+DA G YTGQF+TFALCGFVRA
Sbjct: 1  MQNEEGQNMDLYIPRKCSATNRLITSKDHASVQINIGHLDASGHYTGQFTTFALCGFVRA 60

Query: 61 Q 61
          Q
Sbjct: 61 Q 61

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|330318594|gb|AEC10964.1| 40S ribosomal protein s21e [Camellia sinensis]

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 54/61 (88%), Positives = 60/61 (98%)

Query: 1  MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRA 60
          MQNEEGQNMDLYIPRKCSATNRLIT+KDHA+VQIN+GH+D +GIYTGQF+TFALCGFVRA
Sbjct: 1  MQNEEGQNMDLYIPRKCSATNRLITAKDHASVQINVGHLDENGIYTGQFTTFALCGFVRA 60

Query: 61 Q 61
          Q
Sbjct: 61 Q 61

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450765|ref|XP_002283649.1| PREDICTED: 40S ribosomal protein S21 isoform 1 [Vitis vinifera] gi|296089706|emb|CBI39525.3| unnamed protein product [Vitis vinifera]

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 55/61 (90%), Positives = 58/61 (95%)

Query: 1  MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRA 60
          MQNEEGQNMDLYIPRKCSATNRLITSKDHA+VQINIGH+D  G YTGQF+TFALCGFVRA
Sbjct: 1  MQNEEGQNMDLYIPRKCSATNRLITSKDHASVQINIGHLDESGTYTGQFTTFALCGFVRA 60

Query: 61 Q 61
          Q
Sbjct: 61 Q 61

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147778296|emb|CAN60816.1| hypothetical protein VITISV_033219 [Vitis vinifera]

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 54/61 (88%), Positives = 58/61 (95%)

Query: 1  MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRA 60
          MQNEEGQNMDLYIPRKCSATNRLITSKDHA+VQIN+GH+D  G YTGQF+TFALCGFVRA
Sbjct: 1  MQNEEGQNMDLYIPRKCSATNRLITSKDHASVQINVGHLDESGTYTGQFTTFALCGFVRA 60

Query: 61 Q 61
          Q
Sbjct: 61 Q 61

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484082|gb|ABK93926.1| unknown [Populus trichocarpa]

 Score =  122 bits (305), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 55/61 (90%), Positives = 59/61 (96%)

Query: 1  MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRA 60
          MQNEEGQNMDLYIPRKC+ATNRLITSKDHA+VQINIGH+DA G YTGQF+TFALCGFVRA
Sbjct: 1  MQNEEGQNMDLYIPRKCTATNRLITSKDHASVQINIGHLDASGHYTGQFTTFALCGFVRA 60

Query: 61 Q 61
          Q
Sbjct: 61 Q 61

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|257815606|gb|ACV70141.1| putative 40S ribosomal protein S21e [Jatropha curcas] gi|284520990|gb|ADB93070.1| 40S ribosomal protein S-21e, putative [Jatropha curcas]

 Score =  122 bits (305), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 55/61 (90%), Positives = 60/61 (98%)

Query: 1  MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRA 60
          MQN+EGQNMDLYIPRKCSATNRLITSKDHA+VQINIGH+DA+G YTGQF+TFALCGFVRA
Sbjct: 1  MQNDEGQNMDLYIPRKCSATNRLITSKDHASVQINIGHLDANGNYTGQFTTFALCGFVRA 60

Query: 61 Q 61
          Q
Sbjct: 61 Q 61

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297808753|ref|XP_002872260.1| 40S ribosomal protein S21 [Arabidopsis lyrata subsp. lyrata] gi|297318097|gb|EFH48519.1| 40S ribosomal protein S21 [Arabidopsis lyrata subsp. lyrata]

 Score =  119 bits (297), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 52/61 (85%), Positives = 59/61 (96%)

Query: 1  MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRA 60
          MQNEEGQ  +LYIPRKCSATNRLITSKDHA+VQ+NIGH+DA+G+YTGQF+TFALCGFVRA
Sbjct: 1  MQNEEGQTTELYIPRKCSATNRLITSKDHASVQLNIGHLDANGVYTGQFTTFALCGFVRA 60

Query: 61 Q 61
          Q
Sbjct: 61 Q 61

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116778639|gb|ABK20945.1| unknown [Picea sitchensis] gi|116781585|gb|ABK22166.1| unknown [Picea sitchensis] gi|116784437|gb|ABK23342.1| unknown [Picea sitchensis] gi|116789889|gb|ABK25427.1| unknown [Picea sitchensis] gi|116790377|gb|ABK25591.1| unknown [Picea sitchensis] gi|116793267|gb|ABK26680.1| unknown [Picea sitchensis] gi|224285723|gb|ACN40577.1| unknown [Picea sitchensis] gi|224286304|gb|ACN40860.1| unknown [Picea sitchensis]

 Score =  119 bits (297), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 53/61 (86%), Positives = 59/61 (96%)

Query: 1  MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRA 60
          MQNEEGQN+DLYIPRKCSATNRLITSKDHA+VQ+NIGH+D +GIYTGQF+TFAL GFVRA
Sbjct: 1  MQNEEGQNIDLYIPRKCSATNRLITSKDHASVQLNIGHLDENGIYTGQFTTFALSGFVRA 60

Query: 61 Q 61
          Q
Sbjct: 61 Q 61

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	67
TAIR|locus:2180275	82	AT5G27700 "AT5G27700" [Arabido	0.910	0.743	0.852	5.9e-25
TAIR|locus:2084515	82	AT3G53890 "AT3G53890" [Arabido	0.910	0.743	0.786	1.8e-23
UNIPROTKB|P35687	82	RPS21 "40S ribosomal protein S	0.910	0.743	0.770	7.8e-23
UNIPROTKB|Q60DM0	119	OSJNBb0036M02.11 "40S ribosoma	0.910	0.512	0.754	2.1e-22
UNIPROTKB|A8IXG3	82	RPS21 "40S ribosomal protein S	0.895	0.731	0.683	5.1e-19
ASPGD|ASPL0000009791	88	AN3823 [Emericella nidulans (t	0.910	0.693	0.639	1.7e-18
UNIPROTKB|Q5B6K7	88	AN3823.2 "40S ribosomal protei	0.910	0.693	0.639	1.7e-18
DICTYBASE|DDB_G0293700	78	rps21 "40S ribosomal protein S	0.820	0.705	0.690	7.5e-18
ZFIN|ZDB-GENE-040426-1102	81	rps21 "ribosomal protein S21"	0.880	0.728	0.583	7.7e-16
UNIPROTKB|Q9BYK1	90	RPS21 "40S ribosomal protein S	0.925	0.688	0.539	9.8e-16

TAIR|locus:2180275 AT5G27700 "AT5G27700" [Arabidopsis thaliana (taxid:3702)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 52/61 (85%), Positives = 59/61 (96%)

Query:     1 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRA 60
             MQNEEGQ  +LYIPRKCSATNRLITSKDHA+VQ+NIGH+DA+G+YTGQF+TFALCGFVRA
Sbjct:     1 MQNEEGQVTELYIPRKCSATNRLITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRA 60

Query:    61 Q 61
             Q
Sbjct:    61 Q 61

GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

GO:0000461 "endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS;IBA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0006414 "translational elongation" evidence=IBA

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0042274 "ribosomal small subunit biogenesis" evidence=IBA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0016925 "protein sumoylation" evidence=RCA

GO:0042545 "cell wall modification" evidence=RCA

TAIR|locus:2084515 AT3G53890 "AT3G53890" [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 48/61 (78%), Positives = 58/61 (95%)

Query:     1 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRA 60
             M+N+ GQ  +LYIPRKCSATNR+ITSKDHA+VQ+NIGH+DA+G+YTGQF+TFALCGFVRA
Sbjct:     1 MENDAGQVTELYIPRKCSATNRMITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRA 60

Query:    61 Q 61
             Q
Sbjct:    61 Q 61

GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

GO:0000461 "endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS;IBA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0006414 "translational elongation" evidence=IBA

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0042274 "ribosomal small subunit biogenesis" evidence=IBA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

UNIPROTKB|P35687 RPS21 "40S ribosomal protein S21" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 47/61 (77%), Positives = 57/61 (93%)

Query:     1 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRA 60
             MQNEEGQ +DLY+PRKCSATNR+IT+KDHA+VQINIGHVD +G+Y G+F+TFAL GF+RA
Sbjct:     1 MQNEEGQMVDLYVPRKCSATNRIITAKDHASVQINIGHVDENGLYDGRFTTFALSGFIRA 60

Query:    61 Q 61
             Q
Sbjct:    61 Q 61

GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

GO:0000461 "endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0042274 "ribosomal small subunit biogenesis" evidence=ISS

UNIPROTKB|Q60DM0 OSJNBb0036M02.11 "40S ribosomal protein S21, putative, expressed" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 46/61 (75%), Positives = 56/61 (91%)

Query:     1 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRA 60
             MQNEEGQ +DLY+PRKCS TNR+IT+KDHA+VQINIGHVD +G+Y G+F+TFAL GF+RA
Sbjct:     1 MQNEEGQMVDLYVPRKCSTTNRIITAKDHASVQINIGHVDENGLYDGRFTTFALSGFIRA 60

Query:    61 Q 61
             Q
Sbjct:    61 Q 61

GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

GO:0000461 "endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0042274 "ribosomal small subunit biogenesis" evidence=ISS

UNIPROTKB|A8IXG3 RPS21 "40S ribosomal protein S21" [Chlamydomonas reinhardtii (taxid:3055)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 41/60 (68%), Positives = 54/60 (90%)

Query:     1 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRA 60
             M N+EGQ +DLYIPRKC+ TN+LIT+KDHA+VQINIGH+DA+G+Y+ Q++TFA+ G VRA
Sbjct:     1 MINDEGQVVDLYIPRKCAWTNKLITAKDHASVQINIGHLDANGVYSNQYTTFAIAGNVRA 60

GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

GO:0000461 "endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0042274 "ribosomal small subunit biogenesis" evidence=ISS

ASPGD|ASPL0000009791 AN3823 [Emericella nidulans (taxid:162425)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 39/61 (63%), Positives = 53/61 (86%)

Query:     1 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRA 60
             M+NE+G+ +DLY+PRKCSATNR+I + DHA+VQI+IG VD +G YTG+  T+ALCGF+RA
Sbjct:     1 MENEKGEIVDLYVPRKCSATNRIIKANDHASVQISIGKVDENGRYTGENQTYALCGFIRA 60

Query:    61 Q 61
             +
Sbjct:    61 R 61

GO:0006412 "translation" evidence=IEA

GO:0000461 "endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

UNIPROTKB|Q5B6K7 AN3823.2 "40S ribosomal protein S21" [Aspergillus nidulans FGSC A4 (taxid:227321)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 39/61 (63%), Positives = 53/61 (86%)

Query:     1 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRA 60
             M+NE+G+ +DLY+PRKCSATNR+I + DHA+VQI+IG VD +G YTG+  T+ALCGF+RA
Sbjct:     1 MENEKGEIVDLYVPRKCSATNRIIKANDHASVQISIGKVDENGRYTGENQTYALCGFIRA 60

Query:    61 Q 61
             +
Sbjct:    61 R 61

GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

GO:0000461 "endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0042274 "ribosomal small subunit biogenesis" evidence=ISS

DICTYBASE|DDB_G0293700 rps21 "40S ribosomal protein S21" [Dictyostelium discoideum (taxid:44689)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 38/55 (69%), Positives = 49/55 (89%)

Query:     5 EGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVR 59
             + +N++LY PRKCSATNRLIT+KDHA+VQINIGHV+A+GIY G+ + FA CGF+R
Sbjct:     2 DSKNVELYTPRKCSATNRLITAKDHASVQINIGHVNAEGIYNGEQTIFAFCGFLR 56

GO:0006412 "translation" evidence=IEA;ISS

GO:0005840 "ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS;IBA

GO:0042274 "ribosomal small subunit biogenesis" evidence=IBA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IBA

GO:0006414 "translational elongation" evidence=IBA

GO:0000461 "endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ZFIN|ZDB-GENE-040426-1102 rps21 "ribosomal protein S21" [Danio rerio (taxid:7955)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 35/60 (58%), Positives = 48/60 (80%)

Query:     1 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVD-ADGIYTGQFSTFALCGFVR 59
             MQN+ G+ +DLY+PRKCSA+NR+I +KDHA++QINI  VD   G + GQF T+A+CG +R
Sbjct:     1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQINIAEVDRVTGRFNGQFKTYAICGAIR 60

GO:0003735 "structural constituent of ribosome" evidence=IEA;IBA

GO:0005622 "intracellular" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0000461 "endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IBA

GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA

GO:0006414 "translational elongation" evidence=IBA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|Q9BYK1 RPS21 "40S ribosomal protein S21" [Homo sapiens (taxid:9606)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 34/63 (53%), Positives = 49/63 (77%)

Query:     1 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVD-ADGIYTGQFSTFALCGFVR 59
             MQN+ G+ +DLY+PRKCSA+NR+I +KDHA++Q+N+  VD   G + GQF T+A+CG +R
Sbjct:     1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIR 60

Query:    60 AQV 62
               V
Sbjct:    61 RMV 63

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3E902	RS212_ARATH	No assigned EC number	0.8524	0.9104	0.7439	yes	no
P0C0V8	RS21A_YEAST	No assigned EC number	0.5322	0.9104	0.7011	yes	no
P35687	RS21_ORYSJ	No assigned EC number	0.7704	0.9104	0.7439	yes	no
Q32PB8	RS21_BOVIN	No assigned EC number	0.55	0.8805	0.7108	yes	no
Q9SMI2	RS21_CYAPA	No assigned EC number	0.7377	0.8955	0.7317	N/A	no
Q75BL6	RS21_ASHGO	No assigned EC number	0.5645	0.9104	0.7011	yes	no
Q6DDC6	RS21_XENTR	No assigned EC number	0.55	0.8805	0.7108	yes	no
Q4WI01	RS21_ASPFU	No assigned EC number	0.6065	0.9104	0.6931	yes	no
Q3E754	RS21B_YEAST	No assigned EC number	0.5322	0.9104	0.7011	yes	no
Q54BN4	RS21_DICDI	No assigned EC number	0.6909	0.8208	0.7051	yes	no
Q6FMF8	RS21_CANGA	No assigned EC number	0.5806	0.9104	0.7011	yes	no
Q7ZUG5	RS21_DANRE	No assigned EC number	0.5833	0.8805	0.7283	yes	no
Q29KF5	RS21_DROPS	No assigned EC number	0.5333	0.8805	0.7108	yes	no
Q6CXT6	RS21_KLULA	No assigned EC number	0.5483	0.9104	0.7011	yes	no
P05764	RS21_SCHPO	No assigned EC number	0.5967	0.9104	0.7011	yes	no
P05765	RS21_RAT	No assigned EC number	0.5333	0.8805	0.7108	yes	no
P63221	RS21_PIG	No assigned EC number	0.55	0.8805	0.7108	yes	no
Q41852	RS21_MAIZE	No assigned EC number	0.7704	0.9104	0.7530	N/A	no
O76927	RS21_DROME	No assigned EC number	0.5333	0.8805	0.7108	yes	no
Q9CQR2	RS21_MOUSE	No assigned EC number	0.5333	0.8805	0.7108	yes	no
P63220	RS21_HUMAN	No assigned EC number	0.55	0.8805	0.7108	yes	no
Q9M337	RS211_ARATH	No assigned EC number	0.7868	0.9104	0.7439	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	67
pfam01249	81	pfam01249, Ribosomal_S21e, Ribosomal protein S21e	2e-41

>gnl|CDD|189907 pfam01249, Ribosomal_S21e, Ribosomal protein S21e

 Score =  128 bits (325), Expect = 2e-41
 Identities = 40/61 (65%), Positives = 52/61 (85%)

Query: 1  MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRA 60
          MQN+ G+ +DLYIPRKCSATNR+I +KDHA+VQINI  VD +G YTG+F+T+ALCG++R 
Sbjct: 1  MQNDAGEIVDLYIPRKCSATNRIIGAKDHASVQINIADVDENGRYTGEFTTYALCGYIRR 60

Query: 61 Q 61
           
Sbjct: 61 M 61

Length = 81

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	67
PF01249	81	Ribosomal_S21e: Ribosomal protein S21e ; InterPro:	100.0
KOG3486	83	consensus 40S ribosomal protein S21 [Translation,	100.0

>PF01249 Ribosomal_S21e: Ribosomal protein S21e ; InterPro: IPR001931 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=4.4e-49  Score=250.35  Aligned_cols=64  Identities=61%  Similarity=1.067  Sum_probs=59.4

Q ss_pred             CccccCceeeeeeeecccCCCCcccCCCceeeEEEEEEeCCcceecCceeEEEEehHhhhcccC
Q 035336            1 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRAQVRF   64 (67)
Q Consensus         1 MqNd~g~~VDlYiPRKCS~TnriI~akDHaSVQIni~~vd~~G~~tg~~~t~ai~G~iR~~Ge~   64 (67)
                      ||||+|+|||||||||||||||||+|||||||||||++||++|+|||+++||||||+||+|||+
T Consensus         1 MqNd~g~~VDlYiPRKCS~TnriI~aKDHaSvQinv~~vd~~G~~~g~~~t~ai~G~iR~~Ges   64 (81)
T PF01249_consen    1 MQNDAGEFVDLYIPRKCSATNRIISAKDHASVQINVADVDENGRFTGQFKTYAICGFIRRMGES   64 (81)
T ss_dssp             -CHCCCHC-SSSHHHCHTTTHHCHHTTSTTSEEEEEEEE-SSS-EEEEEEEEEEHHHHHHTTHH
T ss_pred             CcCcCCcEEEEeccccccccCCccccCCceeEEEEeeeecCcccCcCCceEEEEechHhhCcch
Confidence            9999999999999999999999999999999999999999999999999999999999999985

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic ribosomal proteins can be grouped on the basis of sequence similarities. These proteins have 82 to 87 amino acids. The amino termini are all N alpha-acetylated. The N-terminal halves of the protein molecules are highly conserved in contrast to the carboxy-terminal parts [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3U5G_V 3U5C_V 3IZB_T 2XZN_Z 2XZM_Z 3IZ6_T.

>KOG3486 consensus 40S ribosomal protein S21 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=9.8e-45  Score=231.72  Aligned_cols=64  Identities=70%  Similarity=1.192  Sum_probs=62.2

Q ss_pred             CccccCceeeeeeeecccCCCCcccCCCceeeEEEEEEeCCc-ceecCceeEEEEehHhhhcccC
Q 035336            1 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDAD-GIYTGQFSTFALCGFVRAQVRF   64 (67)
Q Consensus         1 MqNd~g~~VDlYiPRKCS~TnriI~akDHaSVQIni~~vd~~-G~~tg~~~t~ai~G~iR~~Ge~   64 (67)
                      ||||+|+|||||||||||+|||||.||||||||||+++||+. |.|+|+++||||||+||+|||+
T Consensus         1 MqNdaGe~v~LYvPrKcS~sNriI~aKDHaSVQ~N~~~vd~~g~~~~g~~ttyAlcg~vr~~ges   65 (83)
T KOG3486|consen    1 MQNDAGQFVELYVPRKCSATNRIITAKDHASVQLNIGHVDAEGGLYTGQFTTYALCGFVRRMGES   65 (83)
T ss_pred             CCCCCcceeEEEecccccccceeeecccchheeecccccccccCccCCceehHHHHHHHHHcCCC
Confidence            999999999999999999999999999999999999999998 5599999999999999999996

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	67
3iz6_T	82	Localization Of The Small Subunit Ribosomal Protein		4e-25
3izb_T	87	Localization Of The Small Subunit Ribosomal Protein		8e-16
3zey_R	194	High-resolution Cryo-electron Microscopy Structure		5e-15
2xzm_Z	97	Crystal Structure Of The Eukaryotic 40s Ribosomal S		1e-09

>pdb|3IZ6|T Chain T, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 82

Iteration: 1
 Score =  109 bits (273), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 47/61 (77%), Positives = 57/61 (93%)
Query: 1  MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRA 60
          MQNEEGQ +DLY+PRKCSATNR+IT+KDHA+VQINIGHVD +G+Y G+F+TFAL GF+RA
Sbjct: 1  MQNEEGQMVDLYVPRKCSATNRIITAKDHASVQINIGHVDENGLYDGRFTTFALSGFIRA 60
Query: 61 Q 61
          Q
Sbjct: 61 Q 61

>pdb|3IZB|T Chain T, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 87

Iteration: 1
 Score = 78.6 bits (192), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 50/62 (80%), Gaps = 1/62 (1%)
Query: 1  MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADG-IYTGQFSTFALCGFVR 59
          M+N++GQ ++LY+PRKCSATNR+I + DHA+VQIN+  VD +G    G++ T+AL G+VR
Sbjct: 1  MENDKGQLVELYVPRKCSATNRIIKADDHASVQINVAKVDEEGRAIPGEYVTYALSGYVR 60
Query: 60 AQ 61
          ++
Sbjct: 61 SR 62

>pdb|3ZEY|R Chain R, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 194

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 35/59 (59%), Positives = 44/59 (74%)
Query: 3  NEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRAQ 61
          NEEG N+DLYIPRKC ATN LITS DH+AVQI I +VD +G+  G  +T  + G++R Q
Sbjct: 8  NEEGVNVDLYIPRKCHATNSLITSFDHSAVQIAIANVDPNGVIDGTTTTLCIAGYLRCQ 66

>pdb|2XZM|Z Chain Z, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 97

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%)
Query: 3  NEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRAQ 61
          N++ + +D Y+PRKC  +N+LI S D ++VQI I  V  +G  TG  +   LCG VR++
Sbjct: 18 NDKKEKIDAYLPRKCDWSNKLIFSNDQSSVQIAIAEVGENGQATGSKTNVVLCGSVRSK 76
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	67
3iz6_T	82	40S ribosomal protein S21 (S21E); eukaryotic ribos	2e-35
2xzm_Z	97	RPS21E; ribosome, translation; 3.93A {Tetrahymena	3e-35
3u5c_V	87	S26, YS25, 40S ribosomal protein S21-A; translatio	3e-33

>3iz6_T 40S ribosomal protein S21 (S21E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 82

 Score =  113 bits (284), Expect = 2e-35
 Identities = 47/61 (77%), Positives = 57/61 (93%)

Query: 1  MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRA 60
          MQNEEGQ +DLY+PRKCSATNR+IT+KDHA+VQINIGHVD +G+Y G+F+TFAL GF+RA
Sbjct: 1  MQNEEGQMVDLYVPRKCSATNRIITAKDHASVQINIGHVDENGLYDGRFTTFALSGFIRA 60

Query: 61 Q 61
          Q
Sbjct: 61 Q 61

>2xzm_Z RPS21E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_Z Length = 97

 Score =  113 bits (284), Expect = 3e-35
 Identities = 25/61 (40%), Positives = 39/61 (63%)

Query: 1  MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRA 60
          + N++ + +D Y+PRKC  +N+LI S D ++VQI I  V  +G  TG  +   LCG VR+
Sbjct: 16 LINDKKEKIDAYLPRKCDWSNKLIFSNDQSSVQIAIAEVGENGQATGSKTNVVLCGSVRS 75

Query: 61 Q 61
          +
Sbjct: 76 K 76

>3u5c_V S26, YS25, 40S ribosomal protein S21-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_T 3u5g_V Length = 87

 Score =  108 bits (270), Expect = 3e-33
 Identities = 33/62 (53%), Positives = 50/62 (80%), Gaps = 1/62 (1%)

Query: 1  MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADG-IYTGQFSTFALCGFVR 59
          M+N++GQ ++LY+PRKCSATNR+I + DHA+VQIN+  VD +G    G++ T+AL G+VR
Sbjct: 1  MENDKGQLVELYVPRKCSATNRIIKADDHASVQINVAKVDEEGRAIPGEYVTYALSGYVR 60

Query: 60 AQ 61
          ++
Sbjct: 61 SR 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	67
3u5c_V	87	S26, YS25, 40S ribosomal protein S21-A; translatio	100.0
2xzm_Z	97	RPS21E; ribosome, translation; 3.93A {Tetrahymena	100.0
3iz6_T	82	40S ribosomal protein S21 (S21E); eukaryotic ribos	100.0

>3u5c_V S26, YS25, 40S ribosomal protein S21-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_T 3u5g_V

Probab=100.00  E-value=5e-49  Score=252.19  Aligned_cols=64  Identities=52%  Similarity=0.930  Sum_probs=63.3

Q ss_pred             CccccCceeeeeeeecccCCCCcccCCCceeeEEEEEEeCCccee-cCceeEEEEehHhhhcccC
Q 035336            1 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIY-TGQFSTFALCGFVRAQVRF   64 (67)
Q Consensus         1 MqNd~g~~VDlYiPRKCS~TnriI~akDHaSVQIni~~vd~~G~~-tg~~~t~ai~G~iR~~Ge~   64 (67)
                      ||||+|+|||||||||||||||||+|||||||||||++||++|+| ||+++||||||+||+|||+
T Consensus         1 MqNd~g~~VDLYiPRKCSaTNriI~AKDHaSVQIni~~vd~~G~~i~g~~~tyai~G~iR~~Ges   65 (87)
T 3u5c_V            1 MENDKGQLVELYVPRKCSATNRIIKADDHASVQINVAKVDEEGRAIPGEYVTYALSGYVRSRGES   65 (87)
T ss_dssp             CCCSSSCCCSSCCCCCCTTTCCCCCTTCTTCEEEEEECCCSSSCCCSSCEEEEEECHHHHHTTCH
T ss_pred             CcCcCCcEEEEEccccccccCCceecCCcceEEEeeeeECCcccEeCCCeeEEEEehhhhhCcch
Confidence            999999999999999999999999999999999999999999999 9999999999999999995

>2xzm_Z RPS21E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_Z

Probab=100.00  E-value=5.7e-47  Score=246.59  Aligned_cols=63  Identities=38%  Similarity=0.669  Sum_probs=62.2

Q ss_pred             CccccCceeeeeeeecccCCCCcccCCCceeeEEEEEEeCCcceec-CceeEEEEehHhhhcccC
Q 035336            1 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYT-GQFSTFALCGFVRAQVRF   64 (67)
Q Consensus         1 MqNd~g~~VDlYiPRKCS~TnriI~akDHaSVQIni~~vd~~G~~t-g~~~t~ai~G~iR~~Ge~   64 (67)
                      ||||+|++||||||||||||||||+|||||||||||++||++|+|+ |+++|| |||+||+|||+
T Consensus        16 MqNd~G~~VDLYiPRKCSaTNRiI~AKDHaSVQInIa~vd~~G~~~~g~~~ty-icG~iR~~Ges   79 (97)
T 2xzm_Z           16 LINDKKEKIDAYLPRKCDWSNKLIFSNDQSSVQIAIAEVGENGQATGSKTNVV-LCGSVRSKGEA   79 (97)
T ss_dssp             CBCTTCCBCSSSCCCBCTTTCCBCCSSCTTCEEEEEEEECSSSCEEEEEEEEE-ECHHHHHTTCH
T ss_pred             cccCCCcEEeEeccccccccCCccccCCceeEEEEhhhcCccccccCCCceEE-EechhhcCcch
Confidence            9999999999999999999999999999999999999999999999 999999 99999999995

>3iz6_T 40S ribosomal protein S21 (S21E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.6e-49  Score=252.23  Aligned_cols=64  Identities=73%  Similarity=1.185  Sum_probs=63.3

Q ss_pred             CccccCceeeeeeeecccCCCCcccCCCceeeEEEEEEeCCcceecCceeEEEEehHhhhcccC
Q 035336            1 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRAQVRF   64 (67)
Q Consensus         1 MqNd~g~~VDlYiPRKCS~TnriI~akDHaSVQIni~~vd~~G~~tg~~~t~ai~G~iR~~Ge~   64 (67)
                      ||||+|+|||||||||||||||||+|||||||||||++||++|+|||+++||||||+||+|||+
T Consensus         1 MqNd~g~~VDLYiPRKCSaTNriI~AKDHaSVQInv~~vd~~G~~~g~~~tyai~G~iR~~Ges   64 (82)
T 3iz6_T            1 MQNEEGQMVDLYVPRKCSATNRIITAKDHASVQINIGHVDENGLYDGRFTTFALSGFIRAQGDA   64 (82)
T ss_dssp             CHHHHHHHCSCHHHHHHHHHHHHHHTTSSSSCCCCCEEECSSSCEEEECCCCSCHHHHHHHHHH
T ss_pred             CcCcCCcEEEEeccccccccCCccccCCceeEEEEEEEEcCCccCCCCeeEEEEehhhhhCcch
Confidence            9999999999999999999999999999999999999999999999999999999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	67
d1s1da_	317	Soluble calcium-activated nucleotidase SCAN-1 {Hum	85.42
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	83.08

>d1s1da_ b.67.3.1 (A:) Soluble calcium-activated nucleotidase SCAN-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Apyrase
family: Apyrase
domain: Soluble calcium-activated nucleotidase SCAN-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.42  E-value=0.11  Score=37.39  Aligned_cols=32  Identities=25%  Similarity=0.583  Sum_probs=23.6

Q ss_pred             eeeeeccc------------CCCCcccC-CCceeeE-EEEEEeCCc
Q 035336           11 LYIPRKCS------------ATNRLITS-KDHAAVQ-INIGHVDAD   42 (67)
Q Consensus        11 lYiPRKCS------------~TnriI~a-kDHaSVQ-Ini~~vd~~   42 (67)
                      ..+|||||            .+|-||.+ .|..+++ |.|+.++++
T Consensus       212 ~FlPRr~S~e~Y~e~~DE~~G~N~li~~~e~F~~i~vi~ig~~~p~  257 (317)
T d1s1da_         212 FFLPRRASQERYSEKDDERKGANLLLSASPDFGDIAVSHVGAVVPT  257 (317)
T ss_dssp             EECCSEEESSCCCHHHHTTCBCCEEEEECTTSSCEEEEECSCCCTT
T ss_pred             EEechhhccccCCchhhhhcCCcEEEEecCCCceeEEEEcCCcCCC
Confidence            36899999            68999997 5566666 566666763

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.08  E-value=0.15  Score=28.03  Aligned_cols=28  Identities=21%  Similarity=0.329  Sum_probs=22.6

Q ss_pred             cccCCCCcccCCCceeeEEEEEEeCCcc
Q 035336           16 KCSATNRLITSKDHAAVQINIGHVDADG   43 (67)
Q Consensus        16 KCS~TnriI~akDHaSVQIni~~vd~~G   43 (67)
                      .|.|+|..=.+.-.++|+|+|.++|-.|
T Consensus        83 ~C~a~N~~G~~~~s~~v~l~V~~l~~~g  110 (110)
T d1f97a2          83 YCQAQNGYGTAMRSEAAHMDAVELNVGG  110 (110)
T ss_dssp             EEEEECSSSCCEECCCEEEEEESSCSCC
T ss_pred             EEEEEECCCcEEEEEEEEEEEEecCCCC
Confidence            6999998866665678999999987655