Citrus Sinensis ID: 035382

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60------
Protein Sequence
MQQDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQTVQ
Secondary Structure (PSIPRED)
ccccccccEEEEEEEEcccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEEcccccccccccccccHHHHHHHHHHHHccccccHcccccccccEEEcccccc
Coil and Loop (DISEMBL)
mqqdgrrpfqlvyhgqfddsrpsnnlpvtgrDIRLAIECVlsgqpvssnqkpsvgcsikwhpqtvq
Flexible Loop (DISEMBL)
MQQDGRRPFQLVyhgqfddsrpsnnLPVTGRDIRLAIECVLSgqpvssnqkpsvgcsikwhpqtvq
Low Complexity Region (SEG)
MQQDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQTVQ
Disordered region (IsUnstruct)
***********VY**************VTGRDIRLAIECVLS************************
Disordered Region (DISOPRED)
****GRRPFQLVYHGQFDD************DIRLAIECVLSGQPVSSNQKPSVGCSIKWHP****
Disordered Region (DISEMBL)
MQQDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG************CSIKWHPQTVQ
Disordered Region (DISPRO)
******RPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQ***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQQDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQTVQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	66
225457739	248	PREDICTED: uncharacterized protein LOC10	0.954	0.254	0.809	4e-25
302142779	246	unnamed protein product [Vitis vinifera]	0.954	0.256	0.809	5e-25
449443822	245	PREDICTED: uncharacterized protein LOC10	0.939	0.253	0.822	1e-24
449475598	245	PREDICTED: uncharacterized protein LOC10	0.939	0.253	0.822	1e-24
297850556	253	electron carrier/ oxidoreductase [Arabid	0.954	0.249	0.793	2e-24
255645689	246	unknown [Glycine max]	0.939	0.252	0.822	9e-24
356515995	246	PREDICTED: uncharacterized protein LOC10	0.939	0.252	0.822	9e-24
224066737	150	predicted protein [Populus trichocarpa]	0.939	0.413	0.774	1e-23
356509312	252	PREDICTED: uncharacterized protein LOC10	0.954	0.25	0.793	1e-23
42571571	252	thioredoxin-like protein [Arabidopsis th	0.954	0.25	0.777	4e-23

>gi|225457739|ref|XP_002278020.1| PREDICTED: uncharacterized protein LOC100253998 [Vitis vinifera]

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 51/63 (80%), Positives = 59/63 (93%)

Query: 2   QQDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWH 61
           ++DGRRPF+LVYHGQFDDSRPSNN+ VTGRD+ LAI+CVLSGQP+S  QKPSVGCSIKWH
Sbjct: 186 KKDGRRPFELVYHGQFDDSRPSNNVRVTGRDLSLAIDCVLSGQPISLVQKPSVGCSIKWH 245

Query: 62  PQT 64
           P+T
Sbjct: 246 PET 248

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142779|emb|CBI19982.3| unnamed protein product [Vitis vinifera]

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 51/63 (80%), Positives = 59/63 (93%)

Query: 2   QQDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWH 61
           ++DGRRPF+LVYHGQFDDSRPSNN+ VTGRD+ LAI+CVLSGQP+S  QKPSVGCSIKWH
Sbjct: 184 KKDGRRPFELVYHGQFDDSRPSNNVRVTGRDLSLAIDCVLSGQPISLVQKPSVGCSIKWH 243

Query: 62  PQT 64
           P+T
Sbjct: 244 PET 246

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443822|ref|XP_004139675.1| PREDICTED: uncharacterized protein LOC101213663 [Cucumis sativus]

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/62 (82%), Positives = 58/62 (93%)

Query: 1   MQQDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKW 60
            ++DGRRPF+LVYHGQFDDSRPSNN P+TGRD+ LA++CVLSGQPVSS QKPSVGCSIKW
Sbjct: 184 FKKDGRRPFELVYHGQFDDSRPSNNKPITGRDLSLALDCVLSGQPVSSVQKPSVGCSIKW 243

Query: 61  HP 62
           HP
Sbjct: 244 HP 245

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449475598|ref|XP_004154498.1| PREDICTED: uncharacterized protein LOC101229282 [Cucumis sativus]

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/62 (82%), Positives = 58/62 (93%)

Query: 1   MQQDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKW 60
            ++DGRRPF+LVYHGQFDDSRPSNN P+TGRD+ LA++CVLSGQPVSS QKPSVGCSIKW
Sbjct: 184 FKKDGRRPFELVYHGQFDDSRPSNNKPITGRDLSLALDCVLSGQPVSSVQKPSVGCSIKW 243

Query: 61  HP 62
           HP
Sbjct: 244 HP 245

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297850556|ref|XP_002893159.1| electron carrier/ oxidoreductase [Arabidopsis lyrata subsp. lyrata] gi|297339001|gb|EFH69418.1| electron carrier/ oxidoreductase [Arabidopsis lyrata subsp. lyrata]

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/63 (79%), Positives = 58/63 (92%)

Query: 2   QQDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWH 61
           ++DGRRPF+LVYHGQFDDSRPSNN+PVTGRD+ LAI+  LS QP+ SNQKPSVGCSIKWH
Sbjct: 189 KKDGRRPFELVYHGQFDDSRPSNNIPVTGRDLSLAIDLALSCQPIPSNQKPSVGCSIKWH 248

Query: 62  PQT 64
           P+T
Sbjct: 249 PET 251

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645689|gb|ACU23338.1| unknown [Glycine max]

 Score =  114 bits (284), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 51/62 (82%), Positives = 57/62 (91%)

Query: 1   MQQDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKW 60
            ++DGRRPF+LVYHGQFDDSRPSNN+PVTGRD+ LAI+ VLSGQPV S QKPSVGCSIKW
Sbjct: 181 FKKDGRRPFELVYHGQFDDSRPSNNVPVTGRDLSLAIDRVLSGQPVPSEQKPSVGCSIKW 240

Query: 61  HP 62
           HP
Sbjct: 241 HP 242

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515995|ref|XP_003526682.1| PREDICTED: uncharacterized protein LOC100806693 [Glycine max]

 Score =  114 bits (284), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 51/62 (82%), Positives = 57/62 (91%)

Query: 1   MQQDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKW 60
            ++DGRRPF+LVYHGQFDDSRPSNN+PVTGRD+ LAI+ VLSGQPV S QKPSVGCSIKW
Sbjct: 181 FKKDGRRPFELVYHGQFDDSRPSNNVPVTGRDLSLAIDRVLSGQPVPSEQKPSVGCSIKW 240

Query: 61  HP 62
           HP
Sbjct: 241 HP 242

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066737|ref|XP_002302190.1| predicted protein [Populus trichocarpa] gi|222843916|gb|EEE81463.1| predicted protein [Populus trichocarpa]

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 48/62 (77%), Positives = 57/62 (91%)

Query: 1   MQQDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKW 60
            ++DGRRPF+LVYHGQ+DDSRPSNN+P+TGRD+ LAI+CVLSGQPVS  QKPSVGC +KW
Sbjct: 86  FKKDGRRPFELVYHGQYDDSRPSNNVPITGRDLSLAIDCVLSGQPVSPVQKPSVGCGVKW 145

Query: 61  HP 62
           HP
Sbjct: 146 HP 147

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509312|ref|XP_003523394.1| PREDICTED: uncharacterized protein LOC100780633 [Glycine max]

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 50/63 (79%), Positives = 58/63 (92%)

Query: 1   MQQDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKW 60
            ++DGRRPF+LVYHGQFDDSRPSNN+P+TGRD+ LAI+ VLSGQPV S QKPSVGCSIKW
Sbjct: 187 FKKDGRRPFELVYHGQFDDSRPSNNVPLTGRDLSLAIDRVLSGQPVPSEQKPSVGCSIKW 246

Query: 61  HPQ 63
           HP+
Sbjct: 247 HPR 249

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42571571|ref|NP_973876.1| thioredoxin-like protein [Arabidopsis thaliana] gi|9454568|gb|AAF87891.1|AC015447_1 Hypothetical protein [Arabidopsis thaliana] gi|222424480|dbj|BAH20195.1| AT1G21350 [Arabidopsis thaliana] gi|332191971|gb|AEE30092.1| thioredoxin-like protein [Arabidopsis thaliana]

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 49/63 (77%), Positives = 57/63 (90%)

Query: 2   QQDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWH 61
           ++DGRRPF+LVYHGQFDDSRPS+N PVTGRD+ LAI+  LS QP+ SNQKPSVGCSIKWH
Sbjct: 188 KKDGRRPFELVYHGQFDDSRPSSNSPVTGRDLSLAIDLSLSCQPIPSNQKPSVGCSIKWH 247

Query: 62  PQT 64
           P+T
Sbjct: 248 PET 250

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	66
TAIR|locus:2027052	252	AT1G21350 [Arabidopsis thalian	0.954	0.25	0.777	4.2e-24
UNIPROTKB|Q83C53	185	CBU_1278 "Thiol-disulfide isom	0.742	0.264	0.510	2.5e-10
TIGR_CMR|CBU_1278	185	CBU_1278 "conserved hypothetic	0.742	0.264	0.510	2.5e-10
UNIPROTKB|Q2GII1	190	APH_1306 "Putative uncharacter	0.803	0.278	0.388	7.8e-06
TIGR_CMR|APH_1306	190	APH_1306 "conserved hypothetic	0.803	0.278	0.388	7.8e-06
UNIPROTKB|Q2GHV8	193	ECH_0147 "Putative uncharacter	0.818	0.279	0.4	5.5e-05
TIGR_CMR|ECH_0147	193	ECH_0147 "conserved hypothetic	0.818	0.279	0.4	5.5e-05
UNIPROTKB|Q2GCP6	176	NSE_0884 "Putative uncharacter	0.727	0.272	0.407	0.00035
TIGR_CMR|NSE_0884	176	NSE_0884 "conserved hypothetic	0.727	0.272	0.407	0.00035

TAIR|locus:2027052 AT1G21350 [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 49/63 (77%), Positives = 57/63 (90%)

Query:     2 QQDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWH 61
             ++DGRRPF+LVYHGQFDDSRPS+N PVTGRD+ LAI+  LS QP+ SNQKPSVGCSIKWH
Sbjct:   188 KKDGRRPFELVYHGQFDDSRPSSNSPVTGRDLSLAIDLSLSCQPIPSNQKPSVGCSIKWH 247

Query:    62 PQT 64
             P+T
Sbjct:   248 PET 250

GO:0005576 "extracellular region" evidence=ISM

GO:0005634 "nucleus" evidence=ISM

GO:0016209 "antioxidant activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0010027 "thylakoid membrane organization" evidence=RCA

UNIPROTKB|Q83C53 CBU_1278 "Thiol-disulfide isomerase and thioredoxin" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 25/49 (51%), Positives = 35/49 (71%)

Query:    12 VYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKW 60
             VY G+FD + P  + PVTG D+R A++ +L+G  V  NQ+PS GC+IKW
Sbjct:   135 VYRGRFDSATPGRDTPVTGEDLRSALDNILAGNLVDPNQQPSQGCNIKW 183

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CBU_1278 CBU_1278 "conserved hypothetical protein" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 25/49 (51%), Positives = 35/49 (71%)

Query:    12 VYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKW 60
             VY G+FD + P  + PVTG D+R A++ +L+G  V  NQ+PS GC+IKW
Sbjct:   135 VYRGRFDSATPGRDTPVTGEDLRSALDNILAGNLVDPNQQPSQGCNIKW 183

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q2GII1 APH_1306 "Putative uncharacterized protein" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 105 (42.0 bits), Expect = 7.8e-06, P = 7.8e-06
 Identities = 21/54 (38%), Positives = 31/54 (57%)

Query:     7 RPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKW 60
             R  QL Y G+FDD +      +   ++  A++ + +   V  NQKPS+GCSIKW
Sbjct:   130 RDLQLCYRGRFDDQKAVEGA-LGASELYEAVKFIATTGGVPENQKPSIGCSIKW 182

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|APH_1306 APH_1306 "conserved hypothetical protein" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 105 (42.0 bits), Expect = 7.8e-06, P = 7.8e-06
 Identities = 21/54 (38%), Positives = 31/54 (57%)

Query:     7 RPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKW 60
             R  QL Y G+FDD +      +   ++  A++ + +   V  NQKPS+GCSIKW
Sbjct:   130 RDLQLCYRGRFDDQKAVEGA-LGASELYEAVKFIATTGGVPENQKPSIGCSIKW 182

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q2GHV8 ECH_0147 "Putative uncharacterized protein" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 98 (39.6 bits), Expect = 5.5e-05, P = 5.5e-05
 Identities = 22/55 (40%), Positives = 30/55 (54%)

Query:    10 QLVYHGQFDDSRPSN-NLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQ 63
             +L Y G+FD S  +  N     RD+  A++ +        NQKPS+GCSIKW  Q
Sbjct:   133 ELCYRGRFDASGKNQMNSKQEDRDLFNAMKLISKTGESPENQKPSIGCSIKWKSQ 187

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|ECH_0147 ECH_0147 "conserved hypothetical protein" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 98 (39.6 bits), Expect = 5.5e-05, P = 5.5e-05
 Identities = 22/55 (40%), Positives = 30/55 (54%)

Query:    10 QLVYHGQFDDSRPSN-NLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQ 63
             +L Y G+FD S  +  N     RD+  A++ +        NQKPS+GCSIKW  Q
Sbjct:   133 ELCYRGRFDASGKNQMNSKQEDRDLFNAMKLISKTGESPENQKPSIGCSIKWKSQ 187

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q2GCP6 NSE_0884 "Putative uncharacterized protein" [Neorickettsia sennetsu str. Miyayama (taxid:222891)]

 Score = 90 (36.7 bits), Expect = 0.00035, P = 0.00035
 Identities = 22/54 (40%), Positives = 29/54 (53%)

Query:     7 RPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKW 60
             R  +L Y GQF D     +      D+  A+  +  G+ VS  QKPS+GCSIKW
Sbjct:   128 RNLELQYRGQFIDLASGTH------DLLDAMLEIAGGRKVSRKQKPSIGCSIKW 175

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|NSE_0884 NSE_0884 "conserved hypothetical protein" [Neorickettsia sennetsu str. Miyayama (taxid:222891)]

 Score = 90 (36.7 bits), Expect = 0.00035, P = 0.00035
 Identities = 22/54 (40%), Positives = 29/54 (53%)

Query:     7 RPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKW 60
             R  +L Y GQF D     +      D+  A+  +  G+ VS  QKPS+GCSIKW
Sbjct:   128 RNLELQYRGQFIDLASGTH------DLLDAMLEIAGGRKVSRKQKPSIGCSIKW 175


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.134   0.424    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       66        66   0.00091  102 3  11 22  0.46    28
                                                     29  0.48    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  541 (58 KB)
  Total size of DFA:  102 KB (2070 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.88u 0.19s 8.07t   Elapsed:  00:00:00
  Total cpu time:  7.88u 0.19s 8.07t   Elapsed:  00:00:00
  Start:  Thu May  9 14:12:49 2013   End:  Thu May  9 14:12:49 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00014275001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (246 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00002136001	SubName- Full=Chromosome chr19 scaffold_126, whole genome shotgun sequence; (681 aa)	•			•					0.536
	GSVIVG00030474001	SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (329 aa)	•								0.506
	GSVIVG00024616001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence;; GTPase of unknown phy [...] (462 aa)	•								0.490
	GSVIVG00023093001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (264 aa)	•								0.465
	GSVIVG00037524001	SubName- Full=Chromosome undetermined scaffold_89, whole genome shotgun sequence; (396 aa)	•								0.444
	GSVIVG00020369001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (555 aa)	•			•					0.444
	GSVIVG00027605001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (230 aa)							•		0.430
	GSVIVG00021326001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (702 aa)	•								0.401

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	66
cd02969	171	cd02969, PRX_like1, Peroxiredoxin (PRX)-like 1 fam	2e-27

>gnl|CDD|239267 cd02969, PRX_like1, Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

 Score = 96.5 bits (241), Expect = 2e-27
 Identities = 31/55 (56%), Positives = 41/55 (74%)

Query: 6   RRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKW 60
               +LVY G+ DDSRP N+ PVTGRD+R A++ +L+G+PV   Q PS+GCSIKW
Sbjct: 117 DPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPVPVPQTPSIGCSIKW 171

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. Length = 171

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	66
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	99.17
PTZ00253	199	tryparedoxin peroxidase; Provisional	97.63
smart00685	59	DM14 Repeats in fly CG4713, worm Y37H9A.3 and huma	83.47

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.17  E-value=6.3e-11  Score=76.47  Aligned_cols=53  Identities=58%  Similarity=1.097  Sum_probs=46.5

Q ss_pred             CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCCcceeee
Q 035382            8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKW   60 (66)
Q Consensus         8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw   60 (66)
                      +++|+|+|.+++.+.......+.++|++||+++|+|+.++.++|++.||+++|
T Consensus       119 ~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~  171 (171)
T cd02969         119 DGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPVPVPQTPSIGCSIKW  171 (171)
T ss_pred             CCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCCCCccccCCCCcccCC
Confidence            67799999999875432235688999999999999999999999999999999

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=97.63  E-value=2.4e-05  Score=52.16  Aligned_cols=50  Identities=22%  Similarity=0.435  Sum_probs=37.9

Q ss_pred             EEEeee--ccCCCC-----CCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCCC
Q 035382           11 LVYHGQ--FDDSRP-----SNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT   64 (66)
Q Consensus        11 L~Y~Gr--IDD~~~-----~~~~~~~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~~~   64 (66)
                      +.|+|.  ||.+..     ..+.+ ...+++++|+.|.+.+.+..   +++||+|+|++++
T Consensus       125 ~~~r~~fiID~~G~i~~~~~~~~~-~~r~~~e~l~~l~a~~~~~~---~~~~cp~~w~~g~  181 (199)
T PTZ00253        125 VAYRGLFIIDPKGMLRQITVNDMP-VGRNVEEVLRLLEAFQFVEK---HGEVCPANWKKGD  181 (199)
T ss_pred             ceEEEEEEECCCCEEEEEEecCCC-CCCCHHHHHHHHHhhhhHHh---cCCEeCCCCCcCC
Confidence            468888  886633     12223 45689999999999999886   5899999998764

>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A

Probab=83.47  E-value=1.4  Score=25.15  Aligned_cols=23  Identities=26%  Similarity=0.485  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHcCCCCCCCCCCC
Q 035382           31 RDIRLAIECVLSGQPVSSNQKPS   53 (66)
Q Consensus        31 ~~L~~Ai~allaG~~v~~~~t~s   53 (66)
                      .-+.+||++.-+|++|.....|+
T Consensus        35 K~~~~~I~~~~aG~pVd~~~lP~   57 (59)
T smart00685       35 KQFDDAIKAARAGRPVDLSELPP   57 (59)
T ss_pred             hhHHHHHHHHHCCCCCChhcCCC
Confidence            34778999999999999988876

3 and human FLJ20241.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	66
2ywi_A	196	Crystal Structure Of Uncharacterized Conserved Prot		2e-15
3u5r_E	218	Crystal Structure Of A Hypothetical Protein Smc0235		1e-14
2cvb_A	188	Crystal Structure Of A Thioredoxin-Like Protein Fro		1e-05

>pdb|2YWI|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein From Geobacillus Kaustophilus Length = 196

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 41/58 (70%)
Query: 7   RPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT 64
           R  + VY GQ DDSRP+N +PVTG  IR A++ +L G+PV   QKPS+GCSIKW P  
Sbjct: 139 RDLKCVYRGQLDDSRPNNGIPVTGESIRAALDALLEGRPVPEKQKPSIGCSIKWKPSA 196

>pdb|3U5R|E Chain E, Crystal Structure Of A Hypothetical Protein Smc02350 From Sinorhizobium Meliloti 1021 Length = 218

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/54 (57%), Positives = 40/54 (74%)
Query: 7   RPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKW 60
           R  +LVYHGQFDD+RP N   VTG D+R A++ VL G+ V + Q PS+GC+IKW
Sbjct: 152 RERRLVYHGQFDDARPGNGKDVTGADLRAAVDAVLKGKDVGTTQVPSIGCNIKW 205

>pdb|2CVB|A Chain A, Crystal Structure Of A Thioredoxin-Like Protein From Thermus Thermophilus Hb8 Length = 188

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 11  LVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHP 62
           L YHG+ +D+ P +   V   D+  AIE +L G+     + P++GC+IKW P
Sbjct: 129 LRYHGRVNDN-PKDPSKVQSHDLEAAIEALLRGEEPPLKEAPAIGCTIKWRP 179
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	66
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	1e-27
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	5e-27
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	4e-24

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus} Length = 196

 Score = 96.8 bits (241), Expect = 1e-27
 Identities = 32/54 (59%), Positives = 40/54 (74%)

Query: 9   FQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHP 62
            + VY GQ DDSRP+N +PVTG  IR A++ +L G+PV   QKPS+GCSIKW P
Sbjct: 141 LKCVYRGQLDDSRPNNGIPVTGESIRAALDALLEGRPVPEKQKPSIGCSIKWKP 194

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti} Length = 218

 Score = 96.0 bits (239), Expect = 5e-27
 Identities = 30/53 (56%), Positives = 39/53 (73%)

Query: 10  QLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHP 62
           +LVYHGQFDD+RP N   VTG D+R A++ VL G+ V + Q PS+GC+IKW  
Sbjct: 155 RLVYHGQFDDARPGNGKDVTGADLRAAVDAVLKGKDVGTTQVPSIGCNIKWTA 207

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A Length = 188

 Score = 87.8 bits (218), Expect = 4e-24
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 9   FQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHP 62
             L YHG+ +D+ P +   V   D+  AIE +L G+     + P++GC+IKW P
Sbjct: 127 RLLRYHGRVNDN-PKDPSKVQSHDLEAAIEALLRGEEPPLKEAPAIGCTIKWRP 179

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	66
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	99.5
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	99.24
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	99.2
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	96.81
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	96.76
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	96.67
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	96.45
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	96.31
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	96.26
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	95.65
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	95.22
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	95.05
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	94.78
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	94.64
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	94.11
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	89.41
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	89.37
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	80.05

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=99.50  E-value=2.6e-14  Score=93.79  Aligned_cols=57  Identities=54%  Similarity=0.994  Sum_probs=50.6

Q ss_pred             CCcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCC
Q 035382            7 RPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQ   63 (66)
Q Consensus         7 ~~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~~   63 (66)
                      .+|+|+|+|++|+.++......+..+|+++|+++|+|++++.++++++||+|+|+++
T Consensus       152 ~~G~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~GC~i~w~~~  208 (218)
T 3u5r_E          152 RERRLVYHGQFDDARPGNGKDVTGADLRAAVDAVLKGKDVGTTQVPSIGCNIKWTAG  208 (218)
T ss_dssp             TTCBEEEEECSSSCCTTSCCCCCCHHHHHHHHHHHTTCCCCSCCCCCEEEECCCCCC
T ss_pred             CCCcEEEeccccccccccccccCHHHHHHHHHHHHcCCCCCcCCcCCCCeeEEeCCC
Confidence            367799999999997655556678999999999999999999999999999999865

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=99.24  E-value=1.1e-11  Score=78.32  Aligned_cols=56  Identities=57%  Similarity=1.121  Sum_probs=47.5

Q ss_pred             CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCC
Q 035382            8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQ   63 (66)
Q Consensus         8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~~   63 (66)
                      +|+++|+|.+|+.++......+..+|+++|++++++++++.++++++||+|+|+++
T Consensus       140 ~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~~~~~~~~~~~~~gC~~~~~~~  195 (196)
T 2ywi_A          140 DLKCVYRGQLDDSRPNNGIPVTGESIRAALDALLEGRPVPEKQKPSIGCSIKWKPS  195 (196)
T ss_dssp             TCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHHHHTCCCCSCCCCCEEEECCCCCC
T ss_pred             CCeEEEccccCcccccccCccCHHHHHHHHHHHHcCCCCCCCCCCCCceeeeeccC
Confidence            67799999999885422223467899999999999999999999999999999875

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=99.20  E-value=1.8e-11  Score=77.20  Aligned_cols=56  Identities=34%  Similarity=0.688  Sum_probs=47.1

Q ss_pred             CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCCC
Q 035382            8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT   64 (66)
Q Consensus         8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~~~   64 (66)
                      +|+++|+|.+|+.++. ....+..+|+++|++++++++++.++++++||+|+|++++
T Consensus       126 ~G~i~~~g~~~~~~~~-~g~~~~~~l~~~i~~ll~~~~~~~~~~~~~gc~~~~~~~~  181 (188)
T 2cvb_A          126 RRLLRYHGRVNDNPKD-PSKVQSHDLEAAIEALLRGEEPPLKEAPAIGCTIKWRPGN  181 (188)
T ss_dssp             TCBEEEEECSSSCTTC-GGGCCCCHHHHHHHHHHTTCCCCSSCCCCCSEECCCCTTC
T ss_pred             CCcEEEEEecCCcccc-ccccCHHHHHHHHHHHHcCCCCCcccCCCCceEEEecCCC
Confidence            6779999999987532 2233566899999999999999999999999999998765

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=96.81  E-value=0.0016  Score=42.38  Aligned_cols=46  Identities=7%  Similarity=0.000  Sum_probs=21.6

Q ss_pred             CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCCC
Q 035382            8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT   64 (66)
Q Consensus         8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~~~   64 (66)
                      +|+|+|+.. .+...    .....+|.++|++|+..      +.++++|+++|+++.
T Consensus       156 ~G~I~~~~~-g~~~~----~~~~~ell~~l~~l~~~------~~~~~~cp~~W~~g~  201 (220)
T 1zye_A          156 NGVIKHLSV-NDLPV----GRSVEETLRLVKAFQFV------EAHGEVSPANWTPES  201 (220)
T ss_dssp             TSBEEEEEE-ECTTC----CCCHHHHHHHHHHHHHT------TC-------------
T ss_pred             CCEEEEEEe-cCCCC----CCCHHHHHHHHHHhhhh------cccCCccCCCCCCCC
Confidence            567888753 22211    13567899999999975      467899999998764

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=96.76  E-value=0.00062  Score=44.27  Aligned_cols=46  Identities=11%  Similarity=0.007  Sum_probs=32.5

Q ss_pred             CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCCC
Q 035382            8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT   64 (66)
Q Consensus         8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~~~   64 (66)
                      +++|+|+..-+.. .    .....+|.++|++|+..+      +.++||++||+++.
T Consensus       151 ~G~i~~~~~~~~~-~----~~~~~ell~~l~~l~~~~------~~~~~cp~~w~~g~  196 (213)
T 2i81_A          151 NGIVQHLLVNNLA-I----GRSVDEILRIIDAIQHHE------KYGDVCPANWQKGK  196 (213)
T ss_dssp             TSBEEEEEEECTT-C----CCCHHHHHHHHHHHHHHH------HHCCBCCTTCCTTS
T ss_pred             CCEEEEEEecCCC-C----CCCHHHHHHHHHHHHhhh------hcCCCcCCCCCcCC
Confidence            6778888642222 1    125678999999998543      46899999998764

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=96.67  E-value=0.0012  Score=41.76  Aligned_cols=31  Identities=19%  Similarity=0.374  Sum_probs=25.0

Q ss_pred             cHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCCC
Q 035382           29 TGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT   64 (66)
Q Consensus        29 ~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~~~   64 (66)
                      ....|.++|++|+.     ..++|+.||+++|++++
T Consensus       143 ~~~~l~~~l~~l~~-----~~~~p~~~~p~~w~~~~  173 (186)
T 1n8j_A          143 DASDLLRKIKAAQY-----VAAHPGEVCPAKWKEGE  173 (186)
T ss_dssp             CHHHHHHHHHHHHH-----HHHSTTCBBCTTCCTTS
T ss_pred             CHHHHHHHHHHHHH-----HhhcCCCccCCCCCCCC
Confidence            36689999999986     44577999999998764

>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A {Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A 3hy2_A*

Probab=96.45  E-value=0.0012  Score=41.73  Aligned_cols=30  Identities=10%  Similarity=0.269  Sum_probs=23.0

Q ss_pred             cHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCCC
Q 035382           29 TGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT   64 (66)
Q Consensus        29 ~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~~~   64 (66)
                      ....+.++|+++..-      .++++||+++|+++.
T Consensus       150 ~~~e~l~~l~~l~~~------~~~~~~cp~~w~~g~  179 (197)
T 1qmv_A          150 SVDEALRLVQAFQYT------DEHGEVCPAGWKPGS  179 (197)
T ss_dssp             CHHHHHHHHHHHHHH------HHHCCBBCTTCCTTS
T ss_pred             CHHHHHHHHHhcchh------hccCCccCCCcCcCC
Confidence            456788888888653      367999999999764

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=96.31  E-value=0.0016  Score=42.25  Aligned_cols=46  Identities=13%  Similarity=0.050  Sum_probs=31.6

Q ss_pred             CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCCC
Q 035382            8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT   64 (66)
Q Consensus         8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~~~   64 (66)
                      +|+|+|+..-+.. .    ......|.++|++|+..      +++++||+++|++++
T Consensus       148 ~G~I~~~~~g~~~-~----~~~~~ell~~l~~l~~~------~~~~~~~p~~w~~g~  193 (211)
T 2pn8_A          148 KGILRQITLNDLP-V----GRSVDETLRLVQAFQYT------DKHGEVCPAGWKPGS  193 (211)
T ss_dssp             TSBEEEEEEECTT-B----CCCHHHHHHHHHHHHHH------HHHCCBBCTTCCTTS
T ss_pred             CCEEEEEEecCCC-C----CCCHHHHHHHHHHhhhc------ccCCcccCCCCCCCC
Confidence            5678887532111 1    12466889999998864      556899999998764

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=96.26  E-value=0.0003  Score=45.85  Aligned_cols=46  Identities=15%  Similarity=0.135  Sum_probs=25.7

Q ss_pred             CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCCC
Q 035382            8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT   64 (66)
Q Consensus         8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~~~   64 (66)
                      +|+|+|+-.-...     .......+.++|+++   +.+   +++++||+|+|+++.
T Consensus       169 ~G~I~~~~~g~~~-----~~~~~~~il~~l~~l---~~~---~~~~~~c~~~w~~~~  214 (222)
T 3ztl_A          169 NGILRQITINDKP-----VGRSVDETLRLLDAF---QFV---EKHGEVCPVNWKRGQ  214 (222)
T ss_dssp             TSEEEEEEEECTT-----BCCCHHHHHHHHHHH---HHH---HHHSCBBCTTCCTTS
T ss_pred             CCeEEEEEecCCC-----CCCCHHHHHHHHHHh---hcc---cccCccCCcCcCCCC
Confidence            5667776432111     011233444444444   333   577999999999764

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=95.65  E-value=0.0046  Score=38.71  Aligned_cols=46  Identities=13%  Similarity=0.050  Sum_probs=31.0

Q ss_pred             CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCCC
Q 035382            8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT   64 (66)
Q Consensus         8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~~~   64 (66)
                      +|+|+|+..-+..     .......|.++|++|...      ++.+.||+++|+++.
T Consensus       130 ~G~i~~~~~g~~~-----~~~~~~~l~~~l~~l~~~------~~~~~~cp~~w~~~~  175 (192)
T 2h01_A          130 QGVVQHLLVNNLA-----LGRSVDEILRLIDALQHH------EKYGDVCPANWQKGK  175 (192)
T ss_dssp             TSBEEEEEEGGGS-----SGGGHHHHHHHHHHHHHH------HHHCCCCCSSCCCC-
T ss_pred             CCEEEEEEeCCCC-----CCCCHHHHHHHHHHHhhh------hhcCCCccCCCCCCC
Confidence            5668877542221     123567899999999854      345899999998764

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=95.22  E-value=0.01  Score=38.94  Aligned_cols=46  Identities=11%  Similarity=0.117  Sum_probs=25.2

Q ss_pred             CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCCC
Q 035382            8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT   64 (66)
Q Consensus         8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~~~   64 (66)
                      +|+|+|+-.-+.. .    ......|.++|++|+..      +..++||+++|+++.
T Consensus       155 ~G~I~~~~~g~~~-~----~~~~~ell~~l~~L~~~------~~~~~~cp~~W~~g~  200 (221)
T 2c0d_A          155 NGCVRHQTVNDLP-I----GRNVQEVLRTIDSIIHV------DTSGEVCPINWKKGQ  200 (221)
T ss_dssp             TSBEEEEEEECTT-C----CCCHHHHHHHHHHHHHH------HHHCCSCC-------
T ss_pred             CCeEEEEEecCCC-C----CCCHHHHHHHHHHHhhh------hcCCCcCCCCCCCCC
Confidence            5678887421111 1    12467899999998864      446899999998754

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=95.05  E-value=0.0095  Score=37.69  Aligned_cols=46  Identities=13%  Similarity=0.119  Sum_probs=31.1

Q ss_pred             CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCCC
Q 035382            8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT   64 (66)
Q Consensus         8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~~~   64 (66)
                      +|+|+|+- +.+.. .   .....+|.++|++|+..      +....+|+++|+++.
T Consensus       136 ~G~i~~~~-~g~~~-~---~~~~~ell~~l~~l~~~------~~~~~~~p~~w~~g~  181 (202)
T 1uul_A          136 KQNLRQIT-VNDLP-V---GRDVDEALRLVKAFQFV------EKHGEVCPANWKPGD  181 (202)
T ss_dssp             TSBEEEEE-EECTT-B---CCCHHHHHHHHHHHHHH------HHHSCBBCTTCCTTS
T ss_pred             CCEEEEEE-eCCCC-C---CCCHHHHHHHHHHhhhh------hhcCCccCCCcCCCC
Confidence            56677772 22221 1   12567899999999864      346899999998764

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=94.78  E-value=0.002  Score=42.84  Aligned_cols=46  Identities=13%  Similarity=0.063  Sum_probs=27.2

Q ss_pred             CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCCC
Q 035382            8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT   64 (66)
Q Consensus         8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~~~   64 (66)
                      +|+|+|+..-+.. .    .....++.++|++|..   +.   ..++||+|+|++++
T Consensus       177 ~G~I~~~~~~~~~-~----~~~~~eil~~l~~lq~---~~---~~~~~cp~~W~~g~  222 (240)
T 3qpm_A          177 KGVLRQITMNDLP-V----GRSVDETLRLVQAFQY---TD---KHGEVCPAGWKPGS  222 (240)
T ss_dssp             TSBEEEEEEECTT-B----CCCHHHHHHHHHHHHH---HH---HHSCBBCTTCCTTS
T ss_pred             CCeEEEEEecCCC-C----CCCHHHHHHHHHHhhh---hh---hcCCccCCCCCCCC
Confidence            6778887543222 1    1234566666666542   11   22899999999864

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=94.64  E-value=0.014  Score=39.25  Aligned_cols=46  Identities=11%  Similarity=-0.029  Sum_probs=17.0

Q ss_pred             CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCCC
Q 035382            8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT   64 (66)
Q Consensus         8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~~~   64 (66)
                      +|+|+|+-.-+.. .    ......+.++|++|-.-.      ..++||+|+|++++
T Consensus       191 ~G~I~~~~~~~~~-~----~~~~~eil~~L~alq~~~------~~~~~cp~~W~~g~  236 (254)
T 3tjj_A          191 KGILRQITLNDLP-V----GRSVDETLRLVQAFQYTD------KHGEVAPAGWKPGS  236 (254)
T ss_dssp             TSBEEEEEEECTT-C----CCCHHHHHHHHHHHHHHH------HHC-----------
T ss_pred             CCeEEEEEecCCC-C----CCCHHHHHHHHHhhcccc------ccCccccCCCCCCC
Confidence            6678887543222 1    123455666666654221      12799999999864

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=94.11  E-value=0.035  Score=34.34  Aligned_cols=31  Identities=13%  Similarity=0.308  Sum_probs=17.8

Q ss_pred             cHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCCC
Q 035382           29 TGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT   64 (66)
Q Consensus        29 ~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~~~   64 (66)
                      +...|.++|++|+..+     +++..+|+++|.++.
T Consensus       144 ~~~~l~~~l~~l~~~~-----~~~~~~~p~~w~~~~  174 (187)
T 1we0_A          144 DASTLINKVKAAQYVR-----ENPGEVCPAKWEEGG  174 (187)
T ss_dssp             CTTHHHHHHHHHHHHH-----TSTTCCC--------
T ss_pred             CHHHHHHHHHHHhhhh-----hCCCcccccccccCC
Confidence            3457899999998643     577899999998753

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=89.41  E-value=0.59  Score=29.00  Aligned_cols=26  Identities=12%  Similarity=0.332  Sum_probs=12.2

Q ss_pred             cHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCCC
Q 035382           29 TGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT   64 (66)
Q Consensus        29 ~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~~~   64 (66)
                      ....|.++|++|++          ..+|+++|+++.
T Consensus       157 ~~~~l~~~l~~l~~----------~~~~p~~w~~~~  182 (195)
T 2bmx_A          157 NVDEVLRVLDALQS----------DELCASNWRKGD  182 (195)
T ss_dssp             CHHHHHHHHHHHHC----------------------
T ss_pred             CHHHHHHHHHHHhh----------CCCcCcccccCC
Confidence            46789999999997          348999998653

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=89.37  E-value=0.19  Score=33.29  Aligned_cols=46  Identities=13%  Similarity=0.168  Sum_probs=30.5

Q ss_pred             CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCCC
Q 035382            8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT   64 (66)
Q Consensus         8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~~~   64 (66)
                      +++|+|.-.-+...     .....+|.++|++|....      ...++|+++|+++.
T Consensus       136 ~G~I~~~~~~~~~~-----gr~~~eilr~l~~Lq~~~------~~~~~~p~~W~~g~  181 (233)
T 2v2g_A          136 DKKLKLSILYPATT-----GRNFSEILRVIDSLQLTA------QKKVATPADWQPGD  181 (233)
T ss_dssp             TSBEEEEEEECTTB-----CCCHHHHHHHHHHHHHHH------HSSEEBCTTCCTTS
T ss_pred             CCEEEEEEecCCCC-----CCCHHHHHHHHHHHHhhc------cCCccCCCCcCcCC
Confidence            55666665432221     124678999999998653      34899999998764

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=80.05  E-value=0.77  Score=29.86  Aligned_cols=46  Identities=9%  Similarity=0.081  Sum_probs=29.8

Q ss_pred             CcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCCC
Q 035382            8 PFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT   64 (66)
Q Consensus         8 ~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~~~   64 (66)
                      +++|+|+-.-+...     .....+|..+|++|+...      ...+.|.++|+++.
T Consensus       140 ~G~I~~~~~~~~~~-----gr~~~eil~~i~~l~~~~------~~~~~~p~~W~~g~  185 (224)
T 1prx_A          140 DKKLKLSILYPATT-----GRNFDEILRVVISLQLTA------EKRVATPVDWKDGD  185 (224)
T ss_dssp             TSBEEEEEECCTTB-----CCCHHHHHHHHHHHHHHH------HHCEEBCTTCCTTS
T ss_pred             CCEEEEEEecCCCC-----CCCHHHHHHHHHHHHhhc------cCCcCCCCCCCCCC
Confidence            55666664322211     124678999999998753      23689999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	66
d2cvba1	187	c.47.1.10 (A:2-188) Probable thiol-disulfide isome	4e-19

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]} Length = 187

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

 Score = 73.8 bits (180), Expect = 4e-19
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 6   RRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHP 62
                L YHG+ +D+ P +   V   D+  AIE +L G+     + P++GC+IKW P
Sbjct: 123 DERRLLRYHGRVNDN-PKDPSKVQSHDLEAAIEALLRGEEPPLKEAPAIGCTIKWRP 178

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	66
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	99.86
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	83.65

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=99.86  E-value=5.3e-23  Score=133.78  Aligned_cols=58  Identities=33%  Similarity=0.670  Sum_probs=51.7

Q ss_pred             CCcEEEEeeeccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCCCC
Q 035382            7 RPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQTV   65 (66)
Q Consensus         7 ~~~~L~Y~GrIDD~~~~~~~~~~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~~~~   65 (66)
                      .+|+|+|||+|||++ .....++.+||++||++||+|+++++++|+|+||+|||++++.
T Consensus       124 ~~G~i~y~G~idd~~-~~~~~~~~~~L~~Ai~~ll~g~~~~~~~t~~~GC~ik~~~~~~  181 (187)
T d2cvba1         124 ERRLLRYHGRVNDNP-KDPSKVQSHDLEAAIEALLRGEEPPLKEAPAIGCTIKWRPGNE  181 (187)
T ss_dssp             TTCBEEEEECSSSCT-TCGGGCCCCHHHHHHHHHHTTCCCCSSCCCCCSEECCCCTTCC
T ss_pred             CCCeEEEEeeecCCC-CCCCCCCHHHHHHHHHHHHcCCCCCccccCCCCcceeECCCCC
Confidence            368899999999995 4445678899999999999999999999999999999998763

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.65  E-value=0.29  Score=30.36  Aligned_cols=30  Identities=10%  Similarity=0.269  Sum_probs=21.3

Q ss_pred             cHHHHHHHHHHHHcCCCCCCCCCCCCcceeeeeCCC
Q 035382           29 TGRDIRLAIECVLSGQPVSSNQKPSVGCSIKWHPQT   64 (66)
Q Consensus        29 ~~~~L~~Ai~allaG~~v~~~~t~s~GCsIKw~~~~   64 (66)
                      ...++-.+|++|..-      .....+|+++|++++
T Consensus       150 ~~~E~lr~l~alq~~------~~~g~~cp~~W~pG~  179 (197)
T d1qmva_         150 SVDEALRLVQAFQYT------DEHGEVCPAGWKPGS  179 (197)
T ss_dssp             CHHHHHHHHHHHHHH------HHHCCBBCTTCCTTS
T ss_pred             CHHHHHHHHHhhccc------cccCcCcCCCCCCCC
Confidence            566788888888531      112458999999876