Citrus Sinensis ID: 035445

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------
Protein Sequence
MAALDYMVSVESDVFIPSHLGNMARAVEGHLMLSVFQD
Secondary Structure (PSIPRED)
cccEEEEEEEcccEEEEccccHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccHHEEEEEcccEEEEcccccHHHHHccccccccccc
Coil and Loop (DISEMBL)
MAALDYMVSVesdvfipshlgNMARAVEGHLMLSVFQD
Flexible Loop (DISEMBL)
MAALDYMVSVESDVFIPSHLGNMARAVEGHLMLSVFQD
Low Complexity Region (SEG)
MAALDYMVSVESDVFIPSHLGNMARAVEGHLMLSVFQD
Disordered region (IsUnstruct)
*****YMVSVESDVFIPSHLGNMARAVEGHLML*****
Disordered Region (DISOPRED)
*AALDYMVSVESDVFIPSHLGNMARAVEGHLML*****
Disordered Region (DISEMBL)
MAALDYMVSVESDVFIPSHLGNMARAVEGHLMLSVFQD
Disordered Region (DISPRO)
*AALDYMVSVESDVFIPSHLGNMARAVEGH*ML**F**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooohhhhhhhhhhhhhhhhiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAALDYMVSVESDVFIPSHLGNMARAVEGHLMLSVFQD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	38
115487704	495	Os12g0190100 [Oryza sativa Japonica Grou	0.789	0.060	0.9	1e-07
222616758	480	hypothetical protein OsJ_35473 [Oryza sa	0.789	0.062	0.9	1e-07
297850698	566	hypothetical protein ARALYDRAFT_472486 [	0.789	0.053	0.9	1e-07
225459219	730	PREDICTED: DUF246 domain-containing prot	0.789	0.041	0.9	1e-07
255545806	536	conserved hypothetical protein [Ricinus	0.789	0.055	0.9	1e-07
42562243	565	O-fucosyltransferase family protein [Ara	0.789	0.053	0.866	2e-07
357489755	552	DUF246 domain-containing protein [Medica	0.789	0.054	0.866	2e-07
6587842	557	Similar to auxin-independent growth prom	0.789	0.053	0.866	2e-07
302141996	536	unnamed protein product [Vitis vinifera]	0.789	0.055	0.9	2e-07
294460590	150	unknown [Picea sitchensis]	0.789	0.2	0.866	2e-07

>gi|115487704|ref|NP_001066339.1| Os12g0190100 [Oryza sativa Japonica Group] gi|77553233|gb|ABA96029.1| Plant protein family protein, expressed [Oryza sativa Japonica Group] gi|77553234|gb|ABA96030.1| Plant protein family protein, expressed [Oryza sativa Japonica Group] gi|113648846|dbj|BAF29358.1| Os12g0190100 [Oryza sativa Japonica Group] gi|215766684|dbj|BAG98912.1| unnamed protein product [Oryza sativa Japonica Group]

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/30 (90%), Positives = 29/30 (96%)

Query: 1   MAALDYMVSVESDVFIPSHLGNMARAVEGH 30
           +AALDY+VSVESDVFIPSH GNMARAVEGH
Sbjct: 379 VAALDYIVSVESDVFIPSHSGNMARAVEGH 408

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222616758|gb|EEE52890.1| hypothetical protein OsJ_35473 [Oryza sativa Japonica Group]

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/30 (90%), Positives = 29/30 (96%)

Query: 1   MAALDYMVSVESDVFIPSHLGNMARAVEGH 30
           +AALDY+VSVESDVFIPSH GNMARAVEGH
Sbjct: 364 VAALDYIVSVESDVFIPSHSGNMARAVEGH 393

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297850698|ref|XP_002893230.1| hypothetical protein ARALYDRAFT_472486 [Arabidopsis lyrata subsp. lyrata] gi|297339072|gb|EFH69489.1| hypothetical protein ARALYDRAFT_472486 [Arabidopsis lyrata subsp. lyrata]

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/30 (90%), Positives = 29/30 (96%)

Query: 1   MAALDYMVSVESDVFIPSHLGNMARAVEGH 30
           MAALDY+VSVESDVFIPS+ GNMARAVEGH
Sbjct: 447 MAALDYIVSVESDVFIPSYSGNMARAVEGH 476

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459219|ref|XP_002284058.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Vitis vinifera]

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/30 (90%), Positives = 29/30 (96%)

Query: 1   MAALDYMVSVESDVFIPSHLGNMARAVEGH 30
           MAALDY+VSVESDVFIPS+ GNMARAVEGH
Sbjct: 410 MAALDYIVSVESDVFIPSYSGNMARAVEGH 439

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545806|ref|XP_002513963.1| conserved hypothetical protein [Ricinus communis] gi|223547049|gb|EEF48546.1| conserved hypothetical protein [Ricinus communis]

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/30 (90%), Positives = 29/30 (96%)

Query: 1   MAALDYMVSVESDVFIPSHLGNMARAVEGH 30
           MAALDY+VSVESDVFIPS+ GNMARAVEGH
Sbjct: 409 MAALDYIVSVESDVFIPSYSGNMARAVEGH 438

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42562243|ref|NP_173662.2| O-fucosyltransferase family protein [Arabidopsis thaliana] gi|219291103|gb|ACL13986.1| At1g22460 [Arabidopsis thaliana] gi|332192123|gb|AEE30244.1| O-fucosyltransferase family protein [Arabidopsis thaliana]

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/30 (86%), Positives = 29/30 (96%)

Query: 1   MAALDYMVSVESDVFIPSHLGNMARAVEGH 30
           MAALDY+VS+ESDVFIPS+ GNMARAVEGH
Sbjct: 446 MAALDYIVSIESDVFIPSYSGNMARAVEGH 475

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357489755|ref|XP_003615165.1| DUF246 domain-containing protein [Medicago truncatula] gi|355516500|gb|AES98123.1| DUF246 domain-containing protein [Medicago truncatula]

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/30 (86%), Positives = 29/30 (96%)

Query: 1   MAALDYMVSVESDVFIPSHLGNMARAVEGH 30
           MAALDY+VS+ESDVFIPS+ GNMARAVEGH
Sbjct: 427 MAALDYIVSIESDVFIPSYSGNMARAVEGH 456

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6587842|gb|AAF18531.1|AC006551_17 Similar to auxin-independent growth promoter [Arabidopsis thaliana]

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/30 (86%), Positives = 29/30 (96%)

Query: 1   MAALDYMVSVESDVFIPSHLGNMARAVEGH 30
           MAALDY+VS+ESDVFIPS+ GNMARAVEGH
Sbjct: 438 MAALDYIVSIESDVFIPSYSGNMARAVEGH 467

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302141996|emb|CBI19199.3| unnamed protein product [Vitis vinifera]

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/30 (90%), Positives = 29/30 (96%)

Query: 1   MAALDYMVSVESDVFIPSHLGNMARAVEGH 30
           MAALDY+VSVESDVFIPS+ GNMARAVEGH
Sbjct: 410 MAALDYIVSVESDVFIPSYSGNMARAVEGH 439

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294460590|gb|ADE75870.1| unknown [Picea sitchensis]

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/30 (86%), Positives = 29/30 (96%)

Query: 1  MAALDYMVSVESDVFIPSHLGNMARAVEGH 30
          MAALDY+VSVESDVF+PS+ GNMARAVEGH
Sbjct: 7  MAALDYIVSVESDVFVPSYSGNMARAVEGH 36

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	38
TAIR|locus:2174754	522	AT5G64600 [Arabidopsis thalian	0.763	0.055	0.862	3.7e-08
TAIR|locus:2009467	565	AT1G22460 [Arabidopsis thalian	0.789	0.053	0.866	4.2e-08
TAIR|locus:2076552	512	AT3G02250 [Arabidopsis thalian	0.789	0.058	0.666	9e-07
TAIR|locus:2143181	508	AT5G15740 [Arabidopsis thalian	0.789	0.059	0.7	1.9e-06
TAIR|locus:2167311	559	AT5G63390 [Arabidopsis thalian	0.789	0.053	0.666	1.6e-05
TAIR|locus:2014869	499	AT1G14020 [Arabidopsis thalian	0.789	0.060	0.7	2.2e-05
TAIR|locus:2056981	508	AT2G03280 [Arabidopsis thalian	0.789	0.059	0.666	2.9e-05
TAIR|locus:2065563	638	AT2G37980 [Arabidopsis thalian	0.973	0.057	0.540	6.4e-05
TAIR|locus:2080285	638	AT3G54100 [Arabidopsis thalian	0.973	0.057	0.540	6.4e-05
TAIR|locus:2077482	579	AT3G07900 [Arabidopsis thalian	0.789	0.051	0.633	0.00012

TAIR|locus:2174754 AT5G64600 [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 3.7e-08, P = 3.7e-08
 Identities = 25/29 (86%), Positives = 28/29 (96%)

Query:     2 AALDYMVSVESDVFIPSHLGNMARAVEGH 30
             AALDY++SVESDVF+PSH GNMARAVEGH
Sbjct:   404 AALDYIISVESDVFVPSHSGNMARAVEGH 432

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISM

TAIR|locus:2009467 AT1G22460 [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 26/30 (86%), Positives = 29/30 (96%)

Query:     1 MAALDYMVSVESDVFIPSHLGNMARAVEGH 30
             MAALDY+VS+ESDVFIPS+ GNMARAVEGH
Sbjct:   446 MAALDYIVSIESDVFIPSYSGNMARAVEGH 475

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISM

TAIR|locus:2076552 AT3G02250 [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 9.0e-07, P = 9.0e-07
 Identities = 20/30 (66%), Positives = 28/30 (93%)

Query:     1 MAALDYMVSVESDVFIPSHLGNMARAVEGH 30
             MAALDY++S+ESD+F+P++ GNMA+ VEGH
Sbjct:   396 MAALDYLISLESDIFVPTYYGNMAKVVEGH 425

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006816 "calcium ion transport" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISM

TAIR|locus:2143181 AT5G15740 [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 21/30 (70%), Positives = 28/30 (93%)

Query:     1 MAALDYMVSVESDVFIPSHLGNMARAVEGH 30
             MAALDY+V++ESD+F+P++ GNMAR VEGH
Sbjct:   396 MAALDYLVALESDIFVPTNDGNMARVVEGH 425

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISM

TAIR|locus:2167311 AT5G63390 [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 20/30 (66%), Positives = 28/30 (93%)

Query:     1 MAALDYMVSVESDVFIPSHLGNMARAVEGH 30
             +AA+DY+VS+ SDVFIPSH GNMA+A++G+
Sbjct:   452 LAAIDYIVSLSSDVFIPSHGGNMAKAMQGN 481

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISM

TAIR|locus:2014869 AT1G14020 [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 2.2e-05, P = 2.2e-05
 Identities = 21/30 (70%), Positives = 26/30 (86%)

Query:     1 MAALDYMVSVESDVFIPSHLGNMARAVEGH 30
             MAALD+MVSV S+ FIP++ GNMA+ VEGH
Sbjct:   380 MAALDFMVSVASNTFIPTYDGNMAKVVEGH 409

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISM

TAIR|locus:2056981 AT2G03280 [Arabidopsis thaliana (taxid:3702)]

 Score = 108 (43.1 bits), Expect = 2.9e-05, P = 2.9e-05
 Identities = 20/30 (66%), Positives = 26/30 (86%)

Query:     1 MAALDYMVSVESDVFIPSHLGNMARAVEGH 30
             MAALD++VSV S+ FIP++ GNMA+ VEGH
Sbjct:   404 MAALDFIVSVASNTFIPTYYGNMAKVVEGH 433

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISM

TAIR|locus:2065563 AT2G37980 [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 6.4e-05, P = 6.4e-05
 Identities = 20/37 (54%), Positives = 30/37 (81%)

Query:     1 MAALDYMVSVESDVFIPSHLGNMARAVEGHLMLSVFQ 37
             +AALDY+V++ESDVF+ ++ GNMA+AV+GH     F+
Sbjct:   512 LAALDYIVALESDVFVYTYDGNMAKAVQGHRRFEGFK 548

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISM

TAIR|locus:2080285 AT3G54100 [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 6.4e-05, P = 6.4e-05
 Identities = 20/37 (54%), Positives = 30/37 (81%)

Query:     1 MAALDYMVSVESDVFIPSHLGNMARAVEGHLMLSVFQ 37
             +AALDY+V++ESDVF+ ++ GNMA+AV+GH     F+
Sbjct:   508 LAALDYIVALESDVFVYTYDGNMAKAVQGHRKFEGFR 544

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISM

TAIR|locus:2077482 AT3G07900 [Arabidopsis thaliana (taxid:3702)]

 Score = 103 (41.3 bits), Expect = 0.00012, P = 0.00012
 Identities = 19/30 (63%), Positives = 24/30 (80%)

Query:     1 MAALDYMVSVESDVFIPSHLGNMARAVEGH 30
             MAA+DY+V  ESDVF+ SH GNM  A++GH
Sbjct:   476 MAAIDYIVCKESDVFMASHGGNMGHAIQGH 505

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISM

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

No confident hit detected by STRING

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	38
cd11299	290	cd11299, O-FucT_plant, GDP-fucose protein O-fucosy	2e-13
pfam10250	315	pfam10250, O-FucT, GDP-fucose protein O-fucosyltra	2e-07

>gnl|CDD|211385 cd11299, O-FucT_plant, GDP-fucose protein O-fucosyltransferase, plant specific subfamily

 Score = 60.3 bits (147), Expect = 2e-13
 Identities = 19/30 (63%), Positives = 26/30 (86%)

Query: 1   MAALDYMVSVESDVFIPSHLGNMARAVEGH 30
           +AALDY+V +ESDVF+P++ GN A+AV GH
Sbjct: 252 LAALDYIVCLESDVFVPTYGGNFAKAVAGH 281

Some members of this plant-specific family of O-fucosyltransferases have been annotated as auxin-independent growth promotors. The function of the protein seems unclear. O-fucosyltransferase-like proteins are GDP-fucose dependent enzymes with similarities to the family 1 glycosyltransferases (GT1). They are soluble ER proteins that may be proteolytically cleaved from a membrane-associated preprotein, and are involved in the O-fucosylation of protein substrates, the core fucosylation of growth factor receptors, and other processes. Length = 290

>gnl|CDD|220652 pfam10250, O-FucT, GDP-fucose protein O-fucosyltransferase

 Score = 43.8 bits (104), Expect = 2e-07
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 1   MAALDYMVSVESDVFIPSHLGNMARAVEGH 30
           +AALDY++ + +DVFI +     +  V+  
Sbjct: 276 LAALDYIICLHADVFIGTCGSTFSAFVKRE 305

This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present in O-FucT-1 as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and C. elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese. Length = 315

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	38
PF10250	351	O-FucT: GDP-fucose protein O-fucosyltransferase; I	98.71

>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats

Probab=98.71  E-value=2.1e-09  Score=67.44  Aligned_cols=37  Identities=19%  Similarity=0.187  Sum_probs=32.3

Q ss_pred             CcceeeeeeeccceeeecCCCCHHHHHhhhhhhcccc
Q 035445            1 MAALDYMVSVESDVFIPSHLGNMARAVEGHLMLSVFQ   37 (38)
Q Consensus         1 lAAlDy~V~~~SDvFv~t~~Gnm~~~v~GhR~y~g~~   37 (38)
                      +|+||++||++||+||.|...+|...|.++|.+.|+.
T Consensus       309 ~a~vD~~i~~~s~~Figt~~Stfs~~i~~~R~~~g~~  345 (351)
T PF10250_consen  309 LAMVDQEICSRSDVFIGTCGSTFSSNIARERHYRGKP  345 (351)
T ss_dssp             -HHHHHHHHHHSSEEEE-TT-HHHHHHHHHHHHSSSS
T ss_pred             hhHHHHHHHhcCCEEEecCcchhHHHhhcccCcCCCC
Confidence            5789999999999999999777999999999999976

Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	38
4ap5_A	408	GDP-fucose protein O-fucosyltransferase 2; GT-B, G	95.66
3zy2_A	362	Putative GDP-fucose protein O-fucosyltransferase;	93.06

>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*

Probab=95.66  E-value=0.0011  Score=42.54  Aligned_cols=36  Identities=11%  Similarity=0.210  Sum_probs=33.5

Q ss_pred             cceeeeeeeccceeeecCCCCHHHHHhhhhhhcccc
Q 035445            2 AALDYMVSVESDVFIPSHLGNMARAVEGHLMLSVFQ   37 (38)
Q Consensus         2 AAlDy~V~~~SDvFv~t~~Gnm~~~v~GhR~y~g~~   37 (38)
                      |.||-.||.+|++||.|....|...|.=.|-+.|+.
T Consensus       347 a~idq~Ic~~a~~FiGt~~StfS~~I~~eR~~~G~~  382 (408)
T 4ap5_A          347 AIIDQWICAHARFFIGTSVSTFSFRIHEEREILGLD  382 (408)
T ss_dssp             HHHHHHHHHTEEEEEBCTTCHHHHHHHHHHHHHTBC
T ss_pred             hHHHHHHHHhCCeeEeCCcCchhHHHHHHHHhcCCC
Confidence            568999999999999999999999999999999974

>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*

Probab=93.06  E-value=0.016  Score=39.13  Aligned_cols=34  Identities=9%  Similarity=0.100  Sum_probs=31.7

Q ss_pred             cceeeeeeeccceeeecCCCCHHHHHhhhhhhcc
Q 035445            2 AALDYMVSVESDVFIPSHLGNMARAVEGHLMLSV   35 (38)
Q Consensus         2 AAlDy~V~~~SDvFv~t~~Gnm~~~v~GhR~y~g   35 (38)
                      |.||.+||.+||+||.+....|...|.=.|--.|
T Consensus       315 a~ID~~I~~~A~~FIGN~~SSFSa~I~rERdi~G  348 (362)
T 3zy2_A          315 MYTSLAIMGRADLFVGNCVSTFSHIVKRERDHAG  348 (362)
T ss_dssp             HHHHHHHHHHSSEEEECTTCHHHHHHHHHHHHSS
T ss_pred             hHHHHHHHHhCCEeecCccccccHHHHHHHHhcC
Confidence            6899999999999999999999999998888877

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00