Citrus Sinensis ID: 035457

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------6
Protein Sequence
MLKDSPCGDCLVHFFCESFALCQEYRELKSRGWHGNLEKQNRGLTMVSTAPVVEGGMTR
Secondary Structure (PSIPRED)
cccccccccHHHHHcccHHHHHHHHHHHHHccccccHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEccHHHHHHHHHHHHHHccccccHHHHccccEEEcccccccccccc
Coil and Loop (DISEMBL)
mlkdspcgdclvhFFCESFALCQEYRELksrgwhgnlekqnrgltmvstapvveggmtr
Flexible Loop (DISEMBL)
MLKDSPCGDCLVHFFCESFALCQEYRELKSRGWHGnlekqnrgltmvstapvveggmtr
Low Complexity Region (SEG)
MLKDSPCGDCLVHFFCESFALCQEYRELKSRGWHGNLEKQNRGLTMVSTAPVVEGGMTR
Disordered region (IsUnstruct)
******CGDCLVHFFCESFALCQEYRELKSRGWHGNL**********************
Disordered Region (DISOPRED)
***DSPCGDCLVHFFCESFALCQEYRELKSRGW**************************
Disordered Region (DISEMBL)
MLKDSPCGDCLVHFFCESFALCQEYRELKSRGWHGNLEKQNRGLTMVSTAPVVEGGMTR
Disordered Region (DISPRO)
****SPCGDCLVHFFCESFALCQEYRELKSRGWHGNLEKQNRGLTMVSTAPVV******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLKDSPCGDCLVHFFCESFALCQEYRELKSRGWHGNLEKQNRGLTMVSTAPVVEGGMTR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	59	2.2.26 [Sep-21-2011]
Q9LQU4	152	Protein PLANT CADMIUM RES	yes	no	0.983	0.381	0.484	7e-09
P0CW97	152	Protein PLANT CADMIUM RES	no	no	0.983	0.381	0.484	1e-08
Q9LQU2	151	Protein PLANT CADMIUM RES	no	no	0.983	0.384	0.484	3e-08
Q9M9A5	224	Protein PLANT CADMIUM RES	no	no	0.847	0.223	0.5	2e-07
Q9SX26	161	Protein PLANT CADMIUM RES	no	no	0.932	0.341	0.468	5e-07
Q9LS43	133	Protein PLANT CADMIUM RES	no	no	0.644	0.285	0.545	5e-07
D9HP26	157	Cell number regulator 10	N/A	no	0.915	0.343	0.5	6e-07
Q9LS44	184	Protein PLANT CADMIUM RES	no	no	0.661	0.211	0.533	1e-06
D9HP19	167	Cell number regulator 3 O	N/A	no	0.932	0.329	0.437	4e-06
B6TZ45	191	Cell number regulator 1 O	N/A	no	0.983	0.303	0.426	6e-06

>sp|Q9LQU4|PCR2_ARATH Protein PLANT CADMIUM RESISTANCE 2 OS=Arabidopsis thaliana GN=PCR2 PE=1 SV=1

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 38/64 (59%), Gaps = 6/64 (9%)

Query: 2   LKDSPCGDCLVHFFCESFALCQEYRELKSR------GWHGNLEKQNRGLTMVSTAPVVEG 55
           +K   C DCL HF CE  +L Q+YRELK R      GW GN+E+Q     +   APV +G
Sbjct: 89  IKGDDCTDCLKHFCCELCSLTQQYRELKHRGYDMSLGWAGNVERQQNQGGVAMGAPVFQG 148

Query: 56  GMTR 59
           GMTR
Sbjct: 149 GMTR 152

Zinc transporter acting in both zinc extrusion and long-distance zinc transport. Involved in the loading of zinc into the xyleme and in the detoxification of excess zinc at the epidermal cells. Acts independently from the zinc transporters HMA2 and HMA4. May be also involved in cadmium resistance.
Arabidopsis thaliana (taxid: 3702)

>sp|P0CW97|PCR3_ARATH Protein PLANT CADMIUM RESISTANCE 3 OS=Arabidopsis thaliana GN=PCR3 PE=3 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 37/64 (57%), Gaps = 6/64 (9%)

Query: 2   LKDSPCGDCLVHFFCESFALCQEYRELKSR------GWHGNLEKQNRGLTMVSTAPVVEG 55
           ++   C DCL HF CE  AL QEYRELK R      GW GN+EKQ     +   AP  +G
Sbjct: 89  IRGDGCTDCLKHFCCELCALTQEYRELKHRGFDMSLGWAGNVEKQQNQGGVAMGAPAFQG 148

Query: 56  GMTR 59
           GM+R
Sbjct: 149 GMSR 152

May be involved in heavy metals transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQU2|PCR1_ARATH Protein PLANT CADMIUM RESISTANCE 1 OS=Arabidopsis thaliana GN=PCR1 PE=1 SV=1

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 35/64 (54%), Gaps = 6/64 (9%)

Query: 2   LKDSPCGDCLVHFFCESFALCQEYRELKSR------GWHGNLEKQNRGLTMVSTAPVVEG 55
           +K   C DCL HF C   AL Q+YRELK R      GW GN EKQ     +   AP  +G
Sbjct: 88  IKGDGCTDCLKHFCCNLCALTQQYRELKHRGFDMSLGWAGNAEKQQNQGGVAMGAPAFQG 147

Query: 56  GMTR 59
           GMTR
Sbjct: 148 GMTR 151

Involved in glutathione-independent cadmium resistance. Reduces cadmium uptake rather than activating efflux, but is not closely coupled to calcium transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M9A5|PCR6_ARATH Protein PLANT CADMIUM RESISTANCE 6 OS=Arabidopsis thaliana GN=PCR6 PE=2 SV=1

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/56 (50%), Positives = 33/56 (58%), Gaps = 6/56 (10%)

Query: 2   LKDSPCGDCLVHFFCESFALCQEYRELKSR------GWHGNLEKQNRGLTMVSTAP 51
           L D+P  D + H FCE  ALCQEYRELK+R      GW GN++KQ  G      AP
Sbjct: 161 LPDAPAPDWITHCFCEYCALCQEYRELKNRGLDPSIGWIGNVQKQRMGQQQEMMAP 216

May be involved in heavy metals transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SX26|PCR12_ARATH Protein PLANT CADMIUM RESISTANCE 12 OS=Arabidopsis thaliana GN=PCR12 PE=2 SV=2

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 36/64 (56%), Gaps = 9/64 (14%)

Query: 2   LKDSPCGDCLVHFFCESFALCQEYRELKSR------GWHGNLEKQNRGLTMVSTAPVVEG 55
           L + PC D LVH FC   A+CQE RELK+R      GW  N+EK +R      T P+V  
Sbjct: 101 LPEEPCRDFLVHLFCTPCAICQESRELKNRGADPSIGWLSNVEKWSREKV---TPPIVVP 157

Query: 56  GMTR 59
           GM R
Sbjct: 158 GMIR 161

May be involved in heavy metals transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LS43|PCR7_ARATH Protein PLANT CADMIUM RESISTANCE 7 OS=Arabidopsis thaliana GN=PCR7 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/44 (54%), Positives = 31/44 (70%), Gaps = 6/44 (13%)

Query: 2   LKDSPCGDCLVHFFCESFALCQEYRELKSR------GWHGNLEK 39
           L +SP  DC+ HFFCE  ALCQE+RELK+R      GW GN+++
Sbjct: 78  LPESPTSDCVTHFFCECCALCQEHRELKTRGLDPSIGWSGNMQR 121

May be involved in heavy metals transport.

Arabidopsis thaliana (taxid: 3702)

>sp|D9HP26|CNR10_MAIZE Cell number regulator 10 OS=Zea mays GN=CNR10 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 37/58 (63%), Gaps = 4/58 (6%)

Query: 2   LKDSPCGDCLVHFFCESFALCQEYRELKSRGWHGNLEKQNRGLTMVSTAPVVEGGMTR 59
           L ++PC DCLVHF CE  ALCQ+Y+ELK+RG+   L   +R  TM+   P    GM R
Sbjct: 104 LPETPCCDCLVHFCCEPCALCQQYKELKARGFDPVL-GWDRNATML---PPSAQGMGR 157

Zea mays (taxid: 4577)

>sp|Q9LS44|PCR4_ARATH Protein PLANT CADMIUM RESISTANCE 4 OS=Arabidopsis thaliana GN=PCR4 PE=3 SV=1

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/45 (53%), Positives = 28/45 (62%), Gaps = 6/45 (13%)

Query: 2   LKDSPCGDCLVHFFCESFALCQEYRELKSR------GWHGNLEKQ 40
           L D+P  D + H FCE  ALCQEYRELK R      GW GN++ Q
Sbjct: 126 LPDAPAPDWITHLFCEHCALCQEYRELKHRGFDPNIGWAGNVQAQ 170

May be involved in heavy metals transport.

Arabidopsis thaliana (taxid: 3702)

>sp|D9HP19|CNR3_MAIZE Cell number regulator 3 OS=Zea mays GN=CNR3 PE=2 SV=1

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 34/64 (53%), Gaps = 9/64 (14%)

Query: 2   LKDSPCGDCLVHFFCESFALCQEYRELKSR------GWHGNLEKQNRGLTMVSTAPVVEG 55
           L ++PC D LVH  C   ALCQEYRELK+R      GW  N ++   G+ M    P    
Sbjct: 107 LPEAPCADFLVHLCCLHCALCQEYRELKARGYEPVLGWEFNAQRAAAGVAMC---PPASQ 163

Query: 56  GMTR 59
           GM R
Sbjct: 164 GMGR 167

Zea mays (taxid: 4577)

>sp|B6TZ45|CNR1_MAIZE Cell number regulator 1 OS=Zea mays GN=CNR1 PE=2 SV=1

 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 10/68 (14%)

Query: 2   LKDSPCGDCLVHFFCESFALCQEYRELKSR------GWHGNLEKQNR----GLTMVSTAP 51
           L +  C D LVH  CE  ALCQEYRELK+R      GW  N+++Q R    G  ++   P
Sbjct: 124 LDEGECPDILVHCCCEHLALCQEYRELKNRGFDLGIGWEANMDRQRRGVAGGGAVMGAPP 183

Query: 52  VVEGGMTR 59
            +  GM R
Sbjct: 184 AIPLGMIR 191

Acts as a negative regulator of cell number.

Zea mays (taxid: 4577)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	59
224099529	192	predicted protein [Populus trichocarpa]	1.0	0.307	0.646	8e-17
224111470	193	predicted protein [Populus trichocarpa]	1.0	0.305	0.6	6e-15
297737655	154	unnamed protein product [Vitis vinifera]	0.949	0.363	0.646	1e-14
225424329	180	PREDICTED: protein PLANT CADMIUM RESISTA	0.949	0.311	0.646	1e-14
225424333	201	PREDICTED: protein PLANT CADMIUM RESISTA	1.0	0.293	0.608	3e-14
147856544	180	hypothetical protein VITISV_006802 [Viti	1.0	0.327	0.608	3e-14
224099527	181	predicted protein [Populus trichocarpa]	1.0	0.325	0.584	9e-14
359472607	180	PREDICTED: protein PLANT CADMIUM RESISTA	0.949	0.311	0.630	1e-13
297737656	154	unnamed protein product [Vitis vinifera]	0.949	0.363	0.630	1e-13
118487250	191	unknown [Populus trichocarpa]	1.0	0.308	0.569	5e-13

>gi|224099529|ref|XP_002311520.1| predicted protein [Populus trichocarpa] gi|222851340|gb|EEE88887.1| predicted protein [Populus trichocarpa]

 Score = 90.9 bits (224), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 42/65 (64%), Positives = 50/65 (76%), Gaps = 6/65 (9%)

Query: 1   MLKDSPCGDCLVHFFCESFALCQEYRELKSR------GWHGNLEKQNRGLTMVSTAPVVE 54
           +L+++PCGDCLVH FCE  +LCQEYRELKSR      GWHGN+EK+NR   M S  PVVE
Sbjct: 128 LLRETPCGDCLVHCFCECCSLCQEYRELKSRGYDLAMGWHGNVEKKNRSSEMASVPPVVE 187

Query: 55  GGMTR 59
           GGM+R
Sbjct: 188 GGMSR 192

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111470|ref|XP_002315866.1| predicted protein [Populus trichocarpa] gi|222864906|gb|EEF02037.1| predicted protein [Populus trichocarpa]

 Score = 84.7 bits (208), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 48/65 (73%), Gaps = 6/65 (9%)

Query: 1   MLKDSPCGDCLVHFFCESFALCQEYRELKSR------GWHGNLEKQNRGLTMVSTAPVVE 54
           +L+++PCGDCLVH  CE  +LCQEYRELKSR      GWHGN+EK+NR + M S  P VE
Sbjct: 129 LLRETPCGDCLVHCCCEYCSLCQEYRELKSRGYDLAMGWHGNVEKKNRSVEMASVPPTVE 188

Query: 55  GGMTR 59
            GM+R
Sbjct: 189 EGMSR 193

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737655|emb|CBI26856.3| unnamed protein product [Vitis vinifera]

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/65 (64%), Positives = 48/65 (73%), Gaps = 9/65 (13%)

Query: 1   MLKDSPCGDCLVHFFCESFALCQEYRELKSR------GWHGNLEKQNRGLTMVSTAPVVE 54
           MLK+SPCGDCLVHF CE+ +LCQEYREL  R      GW GN+E+QNRG+ M   APVVE
Sbjct: 93  MLKESPCGDCLVHFCCETCSLCQEYRELTHRGFDMSLGWEGNMERQNRGVAM---APVVE 149

Query: 55  GGMTR 59
            GM R
Sbjct: 150 RGMQR 154

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424329|ref|XP_002281081.1| PREDICTED: protein PLANT CADMIUM RESISTANCE 2-like [Vitis vinifera]

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/65 (64%), Positives = 48/65 (73%), Gaps = 9/65 (13%)

Query: 1   MLKDSPCGDCLVHFFCESFALCQEYRELKSR------GWHGNLEKQNRGLTMVSTAPVVE 54
           MLK+SPCGDCLVHF CE+ +LCQEYREL  R      GW GN+E+QNRG+ M   APVVE
Sbjct: 119 MLKESPCGDCLVHFCCETCSLCQEYRELTHRGFDMSLGWEGNMERQNRGVAM---APVVE 175

Query: 55  GGMTR 59
            GM R
Sbjct: 176 RGMQR 180

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424333|ref|XP_002284819.1| PREDICTED: protein PLANT CADMIUM RESISTANCE 2 [Vitis vinifera] gi|297737652|emb|CBI26853.3| unnamed protein product [Vitis vinifera]

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/69 (60%), Positives = 50/69 (72%), Gaps = 10/69 (14%)

Query: 1   MLKDSPCGDCLVHFFCESFALCQEYRELKSR------GWHGNLEKQNRGLTMVS----TA 50
           +LK SPCGDCLVH  CE  +LCQEYRELK+R      GWHGN+E+QNRG+ M S    TA
Sbjct: 133 LLKPSPCGDCLVHCCCEYCSLCQEYRELKNRGFDMTIGWHGNVERQNRGVEMSSMSSQTA 192

Query: 51  PVVEGGMTR 59
           P +E GM+R
Sbjct: 193 PTMEEGMSR 201

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147856544|emb|CAN82486.1| hypothetical protein VITISV_006802 [Vitis vinifera]

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/69 (60%), Positives = 50/69 (72%), Gaps = 10/69 (14%)

Query: 1   MLKDSPCGDCLVHFFCESFALCQEYRELKSR------GWHGNLEKQNRGLTMVS----TA 50
           +LK SPCGDCLVH  CE  +LCQEYRELK+R      GWHGN+E+QNRG+ M S    TA
Sbjct: 112 LLKPSPCGDCLVHCCCEYCSLCQEYRELKNRGFDMTIGWHGNVERQNRGVEMSSMSSQTA 171

Query: 51  PVVEGGMTR 59
           P +E GM+R
Sbjct: 172 PTMEEGMSR 180

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099527|ref|XP_002311519.1| predicted protein [Populus trichocarpa] gi|222851339|gb|EEE88886.1| predicted protein [Populus trichocarpa]

 Score = 80.9 bits (198), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 38/65 (58%), Positives = 47/65 (72%), Gaps = 6/65 (9%)

Query: 1   MLKDSPCGDCLVHFFCESFALCQEYRELKSR------GWHGNLEKQNRGLTMVSTAPVVE 54
           M +D PC DCLVHF C++ ALCQEYRELK R      GW  N+E+QN G+TM+++AP VE
Sbjct: 117 MFEDRPCNDCLVHFCCDACALCQEYRELKHRGFDMTMGWQENVERQNGGVTMIASAPPVE 176

Query: 55  GGMTR 59
            GM R
Sbjct: 177 QGMKR 181

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359472607|ref|XP_002281061.2| PREDICTED: protein PLANT CADMIUM RESISTANCE 2 [Vitis vinifera]

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/65 (63%), Positives = 46/65 (70%), Gaps = 9/65 (13%)

Query: 1   MLKDSPCGDCLVHFFCESFALCQEYRELKSR------GWHGNLEKQNRGLTMVSTAPVVE 54
           MLK+SPC DCLVHF CE  +LCQEYREL  R      GW GN+E+QNRG+ M   APVVE
Sbjct: 119 MLKESPCEDCLVHFCCEPCSLCQEYRELTRRGFDMSLGWEGNMERQNRGVAM---APVVE 175

Query: 55  GGMTR 59
            GM R
Sbjct: 176 RGMQR 180

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737656|emb|CBI26857.3| unnamed protein product [Vitis vinifera]

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/65 (63%), Positives = 46/65 (70%), Gaps = 9/65 (13%)

Query: 1   MLKDSPCGDCLVHFFCESFALCQEYRELKSR------GWHGNLEKQNRGLTMVSTAPVVE 54
           MLK+SPC DCLVHF CE  +LCQEYREL  R      GW GN+E+QNRG+ M   APVVE
Sbjct: 93  MLKESPCEDCLVHFCCEPCSLCQEYRELTRRGFDMSLGWEGNMERQNRGVAM---APVVE 149

Query: 55  GGMTR 59
            GM R
Sbjct: 150 RGMQR 154

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118487250|gb|ABK95453.1| unknown [Populus trichocarpa]

 Score = 78.2 bits (191), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/65 (56%), Positives = 47/65 (72%), Gaps = 6/65 (9%)

Query: 1   MLKDSPCGDCLVHFFCESFALCQEYRELKSR------GWHGNLEKQNRGLTMVSTAPVVE 54
           ML+D PC DCLVHF C++ ALCQEYRELK R      GW  N+E+QN  +T++++AP VE
Sbjct: 127 MLEDRPCNDCLVHFCCDACALCQEYRELKHRGFDMTMGWQENVERQNGRVTIIASAPPVE 186

Query: 55  GGMTR 59
            GM R
Sbjct: 187 QGMKR 191

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	59
UNIPROTKB|B6TYV8	181	CNR2 "Cell number regulator 2"	0.949	0.309	0.515	2.8e-11
TAIR|locus:2026910	160	PCR11 "AT1G68610" [Arabidopsis	0.983	0.362	0.461	5.8e-11
TAIR|locus:2006772	152	PCR2 "AT1G14870" [Arabidopsis	0.966	0.375	0.507	2e-10
TAIR|locus:504954894	152	AT5G35525 "AT5G35525" [Arabido	0.966	0.375	0.507	4.1e-10
TAIR|locus:2006767	151	PCR1 "AT1G14880" [Arabidopsis	0.966	0.377	0.507	8.4e-10
UNIPROTKB|B6TZ45	191	CNR1 "Cell number regulator 1"	0.983	0.303	0.426	5.9e-09
TAIR|locus:2095002	133	AT3G18470 "AT3G18470" [Arabido	0.644	0.285	0.545	9.7e-09
TAIR|locus:2028526	224	AT1G49030 "AT1G49030" [Arabido	0.847	0.223	0.5	1.3e-08
TAIR|locus:2026905	161	AT1G68630 "AT1G68630" [Arabido	0.932	0.341	0.468	3.3e-08
TAIR|locus:2095092	184	AT3G18460 "AT3G18460" [Arabido	0.661	0.211	0.533	2.3e-07

UNIPROTKB|B6TYV8 CNR2 "Cell number regulator 2" [Zea mays (taxid:4577)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 33/64 (51%), Positives = 38/64 (59%)

Query:     2 LKDSPCGDCLVHFFCESFALCQEYRELKSRG------WHGNLEKQNRGLTMVSTAPVVEG 55
             L+ SPC DC VH  C+  ALCQEYRELK RG      WH N+E+Q R    V   P +  
Sbjct:   120 LQVSPCSDCCVHCCCQCCALCQEYRELKKRGFDMSIGWHANMERQGRAAAAVP--PHMHP 177

Query:    56 GMTR 59
             GMTR
Sbjct:   178 GMTR 181

GO:0008285 "negative regulation of cell proliferation" evidence=IMP

TAIR|locus:2026910 PCR11 "AT1G68610" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 30/65 (46%), Positives = 39/65 (60%)

Query:     2 LKDSPCGDCLVHFFCESFALCQEYRELKSR-------GWHGNLEKQNRGLTMVSTAPVVE 54
             LK+ PC DC VHF CE  ALCQEYR+L+         GWHGN+E+  R      +AP ++
Sbjct:    94 LKERPCCDCCVHFCCEPCALCQEYRQLQHNRDLDLVIGWHGNMERHARLAASTPSAPPLQ 153

Query:    55 GGMTR 59
               M+R
Sbjct:   154 APMSR 158

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0048235 "pollen sperm cell differentiation" evidence=IEP

TAIR|locus:2006772 PCR2 "AT1G14870" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 33/65 (50%), Positives = 41/65 (63%)

Query:     2 LKDSPCGDCLVHFFCESFALCQEYRELKSRG------WHGNLEKQ-NRGLTMVSTAPVVE 54
             +K   C DCL HF CE  +L Q+YRELK RG      W GN+E+Q N+G   +  APV +
Sbjct:    89 IKGDDCTDCLKHFCCELCSLTQQYRELKHRGYDMSLGWAGNVERQQNQGGVAMG-APVFQ 147

Query:    55 GGMTR 59
             GGMTR
Sbjct:   148 GGMTR 152

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IMP

TAIR|locus:504954894 AT5G35525 "AT5G35525" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 33/65 (50%), Positives = 40/65 (61%)

Query:     2 LKDSPCGDCLVHFFCESFALCQEYRELKSRG------WHGNLEKQ-NRGLTMVSTAPVVE 54
             ++   C DCL HF CE  AL QEYRELK RG      W GN+EKQ N+G   +  AP  +
Sbjct:    89 IRGDGCTDCLKHFCCELCALTQEYRELKHRGFDMSLGWAGNVEKQQNQGGVAMG-APAFQ 147

Query:    55 GGMTR 59
             GGM+R
Sbjct:   148 GGMSR 152

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2006767 PCR1 "AT1G14880" [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 33/65 (50%), Positives = 38/65 (58%)

Query:     2 LKDSPCGDCLVHFFCESFALCQEYRELKSRG------WHGNLEKQ-NRGLTMVSTAPVVE 54
             +K   C DCL HF C   AL Q+YRELK RG      W GN EKQ N+G   +  AP  +
Sbjct:    88 IKGDGCTDCLKHFCCNLCALTQQYRELKHRGFDMSLGWAGNAEKQQNQGGVAMG-APAFQ 146

Query:    55 GGMTR 59
             GGMTR
Sbjct:   147 GGMTR 151

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

UNIPROTKB|B6TZ45 CNR1 "Cell number regulator 1" [Zea mays (taxid:4577)]

 Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 29/68 (42%), Positives = 38/68 (55%)

Query:     2 LKDSPCGDCLVHFFCESFALCQEYRELKSRG------WHGNLEKQNRGLT----MVSTAP 51
             L +  C D LVH  CE  ALCQEYRELK+RG      W  N+++Q RG+     ++   P
Sbjct:   124 LDEGECPDILVHCCCEHLALCQEYRELKNRGFDLGIGWEANMDRQRRGVAGGGAVMGAPP 183

Query:    52 VVEGGMTR 59
              +  GM R
Sbjct:   184 AIPLGMIR 191

GO:0008285 "negative regulation of cell proliferation" evidence=IMP

TAIR|locus:2095002 AT3G18470 "AT3G18470" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 24/44 (54%), Positives = 31/44 (70%)

Query:     2 LKDSPCGDCLVHFFCESFALCQEYRELKSRG------WHGNLEK 39
             L +SP  DC+ HFFCE  ALCQE+RELK+RG      W GN+++
Sbjct:    78 LPESPTSDCVTHFFCECCALCQEHRELKTRGLDPSIGWSGNMQR 121

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2028526 AT1G49030 "AT1G49030" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 28/56 (50%), Positives = 33/56 (58%)

Query:     2 LKDSPCGDCLVHFFCESFALCQEYRELKSRG------WHGNLEKQNRGLTMVSTAP 51
             L D+P  D + H FCE  ALCQEYRELK+RG      W GN++KQ  G      AP
Sbjct:   161 LPDAPAPDWITHCFCEYCALCQEYRELKNRGLDPSIGWIGNVQKQRMGQQQEMMAP 216

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2026905 AT1G68630 "AT1G68630" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 30/64 (46%), Positives = 36/64 (56%)

Query:     2 LKDSPCGDCLVHFFCESFALCQEYRELKSRG------WHGNLEKQNRGLTMVSTAPVVEG 55
             L + PC D LVH FC   A+CQE RELK+RG      W  N+EK +R      T P+V  
Sbjct:   101 LPEEPCRDFLVHLFCTPCAICQESRELKNRGADPSIGWLSNVEKWSREKV---TPPIVVP 157

Query:    56 GMTR 59
             GM R
Sbjct:   158 GMIR 161

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2095092 AT3G18460 "AT3G18460" [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 24/45 (53%), Positives = 28/45 (62%)

Query:     2 LKDSPCGDCLVHFFCESFALCQEYRELKSRG------WHGNLEKQ 40
             L D+P  D + H FCE  ALCQEYRELK RG      W GN++ Q
Sbjct:   126 LPDAPAPDWITHLFCEHCALCQEYRELKHRGFDPNIGWAGNVQAQ 170

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00081242 hypothetical protein (192 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	59
TIGR01571	104	TIGR01571, A_thal_Cys_rich, uncharacterized Cys-ri	1e-07
pfam04749	99	pfam04749, PLAC8, PLAC8 family	2e-07

>gnl|CDD|233473 TIGR01571, A_thal_Cys_rich, uncharacterized Cys-rich domain

 Score = 43.6 bits (103), Expect = 1e-07
 Identities = 17/29 (58%), Positives = 21/29 (72%)

Query: 2   LKDSPCGDCLVHFFCESFALCQEYRELKS 30
           ++ +PC DCL H FC   ALCQE+RELK 
Sbjct: 76  IQGAPCDDCLTHLFCCFCALCQEHRELKM 104

This model describes an uncharacterized domain of about 100 residues. It is common in plants but found also in Homo sapiens, Dictyostelium, and Leishmania; at least 12 distinct members are found in Arabidopsis. Most members of this family contain more than 10 per cent Cys, but no Cys residue is invariant across the family. Length = 104

>gnl|CDD|218240 pfam04749, PLAC8, PLAC8 family

 Score = 42.7 bits (101), Expect = 2e-07
 Identities = 18/27 (66%), Positives = 20/27 (74%)

Query: 2  LKDSPCGDCLVHFFCESFALCQEYREL 28
          ++ SPC DCLVH FC   ALCQE REL
Sbjct: 73 IEGSPCDDCLVHCFCPPCALCQEDREL 99

This family includes the Placenta-specific gene 8 protein. Length = 99

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	59
TIGR01571	104	A_thal_Cys_rich uncharacterized Cys-rich domain. T	99.41
PF04749	106	PLAC8: PLAC8 family; InterPro: IPR006461 This grou	99.2

>TIGR01571 A_thal_Cys_rich uncharacterized Cys-rich domain

Probab=99.41  E-value=1.2e-13  Score=85.20  Aligned_cols=30  Identities=57%  Similarity=1.081  Sum_probs=29.0

Q ss_pred             CCCCCCcchHHHHHchhHHHHHHHHHHHHH
Q 035457            1 MLKDSPCGDCLVHFFCESFALCQEYRELKS   30 (59)
Q Consensus         1 ~I~gs~c~Dc~~~~~C~~CalcQe~RElk~   30 (59)
                      ||+||+++||++|+||++|++|||+||||+
T Consensus        75 ~i~gs~~~D~~~~~~C~~C~lcQ~~RElk~  104 (104)
T TIGR01571        75 GIQGAPCDDCLTHLFCCFCALCQEHRELKM  104 (104)
T ss_pred             CCCCCCcccchHHHHhhhHHHHHHHHHHhC
Confidence            799999999999999999999999999985

This model describes an uncharacterized domain of about 100 residues. It is common in plants but found also in Homo sapiens, Dictyostelium, and Leishmania; at least 12 distinct members are found in Arabidopsis. Most members of this family contain more than 10 per cent Cys, but no Cys residue is invariant across the family.

>PF04749 PLAC8: PLAC8 family; InterPro: IPR006461 This group of sequences are described by a region of about 170 amino acids

Probab=99.20  E-value=8.2e-12  Score=74.44  Aligned_cols=28  Identities=46%  Similarity=0.815  Sum_probs=27.3

Q ss_pred             CCCCCCcchHHHHHchhHHHHHHHHHHH
Q 035457            1 MLKDSPCGDCLVHFFCESFALCQEYREL   28 (59)
Q Consensus         1 ~I~gs~c~Dc~~~~~C~~CalcQe~REl   28 (59)
                      ||+|+.++||++++||++||++||+|||
T Consensus        79 ~I~g~~~~D~~~~~~C~~Cal~Q~~rEl  106 (106)
T PF04749_consen   79 GIQGSCCEDCCCSCCCPPCALCQEAREL  106 (106)
T ss_pred             CCCCCChhhhHHHHHHHHHHHHHHHhhC
Confidence            7999999999999999999999999996

These proteins have highly divergent N-terminal regions rich in low complexity sequence. PSI-BLAST reveals no clear similarity to any characterised protein. It is common in plants but found also in Homo sapiens (Human), Dictyostelium, and Leishmania; at least 12 distinct members are found in Arabidopsis. Most members of this family contain more than 10 per cent Cys, but no Cys residue is invariant across the family.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00