Citrus Sinensis ID: 035537

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
MVTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM
Secondary Structure (PSIPRED)
cccEEEEEEEEEEEcccccccccccEEEEEEEEccEEEEEHHHHHHHHHHHHHHcccccEEEEEEEccccccEEEEEEEEEEEEcccccccccHHHHccHHHHHHHHHHHHHHHccccccccEEEEEEEEEccccccccccccccccccccccEEcccccccccccccEEcccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEEEccccccccccccEEEEEEEccccEEEHHHHHHHHHHHHHHHHccccEEEEEEEccccccEEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEcHHHcccHHHHHHcccccccccccccccccccccccEEEEccccccc
Coil and Loop (DISEMBL)
mvtfrfhqyqvvgralptesdehpkiyRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFeknptkiknYGIWLRyqsrtgyhNMYKEYRDTTLNGAVEQMYTEMAsrhrvrspciQIIKTatipaklckrestkqfhnskikfplvfrkvrppsrklrttykatrpnlfm
Flexible Loop (DISEMBL)
mvtfrfhqyqvvgralptesdehpKIYRMKlwatnevraKSKFWYFLRKLKKvkksngqmlaineifeknptkiknyGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMAsrhrvrspCIQIIKTatipaklckrestkqfhnskikfplvfrkvrppsrklrttykatrpnlfm
Low Complexity Region (SEG)
MVTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM
Disordered region (IsUnstruct)
***FRFHQYQVVGRALPT****HPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKV********************
Disordered Region (DISOPRED)
***FRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM
Disordered Region (DISEMBL)
MVTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM
Disordered Region (DISPRO)
*VTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRP****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	178	2.2.26 [Sep-21-2011]
Q9ATF5	178	60S ribosomal protein L18	N/A	no	1.0	1.0	0.938	5e-97
P51418	178	60S ribosomal protein L18	yes	no	1.0	1.0	0.926	2e-95
Q9LUD4	178	60S ribosomal protein L18	no	no	1.0	1.0	0.915	3e-94
Q943F3	178	60S ribosomal protein L18	yes	no	1.0	1.0	0.887	1e-91
Q54MK8	171	60S ribosomal protein L18	yes	no	0.938	0.976	0.558	4e-52
Q02543	176	60S ribosomal protein L18	yes	no	0.938	0.948	0.523	3e-48
Q3T003	176	60S ribosomal protein L18	yes	no	0.938	0.948	0.523	3e-48
P62718	176	60S ribosomal protein L18	yes	no	0.943	0.954	0.520	3e-48
P62717	176	60S ribosomal protein L18	yes	no	0.943	0.954	0.520	3e-48
Q8WQI7	177	60S ribosomal protein L18	N/A	no	0.820	0.824	0.561	3e-48

>sp|Q9ATF5|RL18A_CASSA 60S ribosomal protein L18a OS=Castanea sativa GN=RPL18A PE=2 SV=1

 Score =  353 bits (905), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 167/178 (93%), Positives = 173/178 (97%)

Query: 1   MVTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60
           MVTFRFHQYQVVGR LP+E+DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM
Sbjct: 1   MVTFRFHQYQVVGRGLPSETDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMY EMASRHRVR 
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYIEMASRHRVRF 120

Query: 121 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 178
           PCIQIIKTATIPAKLCKRES+KQFHNSKIKFPLV RK+RPPSRKL+T YKA+RPNLFM
Sbjct: 121 PCIQIIKTATIPAKLCKRESSKQFHNSKIKFPLVTRKIRPPSRKLKTHYKASRPNLFM 178

Castanea sativa (taxid: 21020)

>sp|P51418|R18A2_ARATH 60S ribosomal protein L18a-2 OS=Arabidopsis thaliana GN=RPL18AB PE=1 SV=2

 Score =  347 bits (891), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 165/178 (92%), Positives = 170/178 (95%)

Query: 1   MVTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60
           M  FRFHQYQVVGRALPTE D  PKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM
Sbjct: 1   MGAFRFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 120
           LAINEI+EKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR 
Sbjct: 61  LAINEIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 178
           PCIQIIKTAT+PAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKL+TTYKA +PNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKPNLFM 178

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUD4|R18A3_ARATH 60S ribosomal protein L18a-3 OS=Arabidopsis thaliana GN=RPL18AC PE=2 SV=1

 Score =  343 bits (881), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 163/178 (91%), Positives = 169/178 (94%)

Query: 1   MVTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60
           M  FRFHQYQVVGRALPTE+DEHPKIYRMKLW  NEV AKSKFWYF+RKLKKVKKSNGQM
Sbjct: 1   MGGFRFHQYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 120
           LAINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNG VEQMYTEMASRHRVR 
Sbjct: 61  LAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 178
           PCIQIIKTAT+PAKLCKRE TKQFHNSKIKFPLVFRKVRPPSRKL+TTYKA++PNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKREITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKPNLFM 178

Arabidopsis thaliana (taxid: 3702)

>sp|Q943F3|RL18A_ORYSJ 60S ribosomal protein L18a OS=Oryza sativa subsp. japonica GN=RPL18A PE=2 SV=1

 Score =  335 bits (858), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 158/178 (88%), Positives = 168/178 (94%)

Query: 1   MVTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60
           M  FRFHQYQVVGR LPT +DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MGAFRFHQYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 120
           LAINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR 
Sbjct: 61  LAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 178
           PCIQIIKTAT+  KLCKR++TKQFH S IKFPLV+RKVRPP+RKL+TT+KA+RPNLFM
Sbjct: 121 PCIQIIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTFKASRPNLFM 178

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q54MK8|RL18A_DICDI 60S ribosomal protein L18a OS=Dictyostelium discoideum GN=rpl18a PE=3 SV=2

 Score =  203 bits (517), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 96/172 (55%), Positives = 122/172 (70%), Gaps = 5/172 (2%)

Query: 7   HQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEI 66
           H++QVVGR +PTE D +PKIYRM+L+A   + AKS+FWYFL K+ K+KKS G++L + EI
Sbjct: 4   HEFQVVGRHVPTERDANPKIYRMRLFAQTSIHAKSRFWYFLSKIVKMKKSTGEILNVTEI 63

Query: 67  FEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQII 126
           FE  P K+KN+G+++RY SR+G HN+YKEYRD T  GAV QMY EMASRH  R   I II
Sbjct: 64  FEDKPQKVKNFGVFIRYNSRSGTHNIYKEYRDLTRCGAVSQMYDEMASRHSARESSIHII 123

Query: 127 KTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 178
               I A L +R +TKQFH+SKIKFPL  R       K ++T+ A RPN F 
Sbjct: 124 DIKEIAASLTRRANTKQFHDSKIKFPLTHRIA-----KSKSTFVANRPNTFF 170

Dictyostelium discoideum (taxid: 44689)

>sp|Q02543|RL18A_HUMAN 60S ribosomal protein L18a OS=Homo sapiens GN=RPL18A PE=1 SV=2

 Score =  191 bits (484), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 89/170 (52%), Positives = 122/170 (71%), Gaps = 3/170 (1%)

Query: 8   QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 67
           +Y+VVGR LPT     P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++   ++F
Sbjct: 9   EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVF 68

Query: 68  EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIK 127
           EK+P ++KN+GIWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQI+K
Sbjct: 69  EKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMK 128

Query: 128 TATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 177
              I A  C+R + KQFH+SKIKFPL  R +R   R+ +  +   RPN F
Sbjct: 129 VEEIAASKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175

Homo sapiens (taxid: 9606)

>sp|Q3T003|RL18A_BOVIN 60S ribosomal protein L18a OS=Bos taurus GN=RPL18A PE=2 SV=1

 Score =  191 bits (484), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 89/170 (52%), Positives = 122/170 (71%), Gaps = 3/170 (1%)

Query: 8   QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 67
           +Y+VVGR LPT     P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++   ++F
Sbjct: 9   EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVF 68

Query: 68  EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIK 127
           EK+P ++KN+GIWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQI+K
Sbjct: 69  EKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMK 128

Query: 128 TATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 177
              I A  C+R + KQFH+SKIKFPL  R +R   R+ +  +   RPN F
Sbjct: 129 VEEIAASKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175

Bos taurus (taxid: 9913)

>sp|P62718|RL18A_RAT 60S ribosomal protein L18a OS=Rattus norvegicus GN=Rpl18a PE=2 SV=1

 Score =  191 bits (484), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 89/171 (52%), Positives = 122/171 (71%), Gaps = 3/171 (1%)

Query: 8   QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 67
           +Y+VVGR LPT     P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++   ++F
Sbjct: 9   EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVF 68

Query: 68  EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIK 127
           EK+P ++KN+GIWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQI+K
Sbjct: 69  EKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMK 128

Query: 128 TATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 178
              I A  C+R + KQFH+SKIKFPL  R +R   R+ +  +   RPN F 
Sbjct: 129 VEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTFF 176

Rattus norvegicus (taxid: 10116)

>sp|P62717|RL18A_MOUSE 60S ribosomal protein L18a OS=Mus musculus GN=Rpl18a PE=1 SV=1

 Score =  191 bits (484), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 89/171 (52%), Positives = 122/171 (71%), Gaps = 3/171 (1%)

Query: 8   QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 67
           +Y+VVGR LPT     P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++   ++F
Sbjct: 9   EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVF 68

Query: 68  EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIK 127
           EK+P ++KN+GIWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQI+K
Sbjct: 69  EKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMK 128

Query: 128 TATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 178
              I A  C+R + KQFH+SKIKFPL  R +R   R+ +  +   RPN F 
Sbjct: 129 VEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTFF 176

Mus musculus (taxid: 10090)

>sp|Q8WQI7|RL18A_SPOFR 60S ribosomal protein L18a OS=Spodoptera frugiperda GN=RpL18A PE=2 SV=1

 Score =  190 bits (483), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 82/146 (56%), Positives = 115/146 (78%)

Query: 8   QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 67
           +Y+V+GR LP+ES+  P +Y+M++++ +++ AKS+FWYFLR+LKK KK+ G++++I EI 
Sbjct: 9   EYEVIGRKLPSESEPKPPLYKMRIFSPDQIVAKSRFWYFLRQLKKFKKTTGEIVSIREIP 68

Query: 68  EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIK 127
           EK+P KIKN+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R+  IQIIK
Sbjct: 69  EKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIK 128

Query: 128 TATIPAKLCKRESTKQFHNSKIKFPL 153
              I A  C+R   KQFHNS I+FPL
Sbjct: 129 VEVIKASACRRPQVKQFHNSTIRFPL 154

Spodoptera frugiperda (taxid: 7108)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	178
118482586	178	unknown [Populus trichocarpa] gi|1184855	1.0	1.0	0.971	1e-98
449519146	752	PREDICTED: protein ASPARTIC PROTEASE IN	1.0	0.236	0.943	6e-98
224062663	178	predicted protein [Populus trichocarpa]	1.0	1.0	0.955	7e-98
224078998	178	predicted protein [Populus trichocarpa]	1.0	1.0	0.966	9e-98
224116756	178	predicted protein [Populus trichocarpa]	1.0	1.0	0.960	1e-97
449459356	178	PREDICTED: 60S ribosomal protein L18a-li	1.0	1.0	0.938	2e-97
225463466	178	PREDICTED: 60S ribosomal protein L18a [V	1.0	1.0	0.949	3e-97
351727627	178	uncharacterized protein LOC100306365 [Gl	1.0	1.0	0.955	4e-97
118484993	178	unknown [Populus trichocarpa]	1.0	1.0	0.949	5e-97
147843375	178	hypothetical protein VITISV_011977 [Viti	1.0	1.0	0.943	8e-97

>gi|118482586|gb|ABK93213.1| unknown [Populus trichocarpa] gi|118485561|gb|ABK94632.1| unknown [Populus trichocarpa]

 Score =  363 bits (932), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 173/178 (97%), Positives = 177/178 (99%)

Query: 1   MVTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60
           MVTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MVTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR 
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 178
           PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVF+KVRPPSRKL+TTYKA+RPNLFM
Sbjct: 121 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPSRKLKTTYKASRPNLFM 178

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449519146|ref|XP_004166596.1| PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1-like [Cucumis sativus]

 Score =  361 bits (927), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 168/178 (94%), Positives = 177/178 (99%)

Query: 1   MVTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60
           MVTFRFHQYQVVGRALP+ESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 575 MVTFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 634

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR 
Sbjct: 635 LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRC 694

Query: 121 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 178
           PCIQIIKTAT+PAKLCKRESTKQFH+SKIKFPLVF+KVRPP+RKL+TTYKA++PNLFM
Sbjct: 695 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASKPNLFM 752

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062663|ref|XP_002300869.1| predicted protein [Populus trichocarpa] gi|118481342|gb|ABK92614.1| unknown [Populus trichocarpa] gi|222842595|gb|EEE80142.1| predicted protein [Populus trichocarpa]

 Score =  361 bits (926), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 170/178 (95%), Positives = 177/178 (99%)

Query: 1   MVTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60
           MV+FRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVR+KSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MVSFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRSKSKFWYFLRKLKKVKKSNGQI 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMY EMASRHRVRS
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRS 120

Query: 121 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 178
           PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVF+KVRPP+RKL+TTYKA+RPNLFM
Sbjct: 121 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 178

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078998|ref|XP_002305712.1| predicted protein [Populus trichocarpa] gi|224079000|ref|XP_002305713.1| predicted protein [Populus trichocarpa] gi|224079007|ref|XP_002305715.1| predicted protein [Populus trichocarpa] gi|118481545|gb|ABK92715.1| unknown [Populus trichocarpa] gi|222848676|gb|EEE86223.1| predicted protein [Populus trichocarpa] gi|222848677|gb|EEE86224.1| predicted protein [Populus trichocarpa] gi|222848679|gb|EEE86226.1| predicted protein [Populus trichocarpa]

 Score =  360 bits (925), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 172/178 (96%), Positives = 176/178 (98%)

Query: 1   MVTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60
           MVTFRFHQYQVVGRALPT SDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MVTFRFHQYQVVGRALPTGSDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR 
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 178
           PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVF+KVRPPSRKL+TTYKA+RPNLFM
Sbjct: 121 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPSRKLKTTYKASRPNLFM 178

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116756|ref|XP_002317384.1| predicted protein [Populus trichocarpa] gi|118483631|gb|ABK93710.1| unknown [Populus trichocarpa] gi|222860449|gb|EEE97996.1| predicted protein [Populus trichocarpa]

 Score =  360 bits (924), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 171/178 (96%), Positives = 176/178 (98%)

Query: 1   MVTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60
           MVTFRFHQYQVVGRALPT+SDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MVTFRFHQYQVVGRALPTQSDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 120
           LAINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR 
Sbjct: 61  LAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 178
           PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVF+KVRPPSRKL+TTYKA+RPNLFM
Sbjct: 121 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPSRKLKTTYKASRPNLFM 178

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459356|ref|XP_004147412.1| PREDICTED: 60S ribosomal protein L18a-like [Cucumis sativus] gi|449515807|ref|XP_004164939.1| PREDICTED: 60S ribosomal protein L18a-like [Cucumis sativus]

 Score =  359 bits (922), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 167/178 (93%), Positives = 178/178 (100%)

Query: 1   MVTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60
           MV+FRFHQYQVVGRALP+ESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MVSFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 120
           LAINEIFEKNPTK+KNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS
Sbjct: 61  LAINEIFEKNPTKVKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 120

Query: 121 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 178
           PCIQIIKTAT+PAKLCKRESTKQFH+SKIKFPLVF+KVRPP+RKL+TTYKA++PNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASKPNLFM 178

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463466|ref|XP_002276260.1| PREDICTED: 60S ribosomal protein L18a [Vitis vinifera] gi|147769189|emb|CAN71860.1| hypothetical protein VITISV_019859 [Vitis vinifera] gi|297740674|emb|CBI30856.3| unnamed protein product [Vitis vinifera]

 Score =  359 bits (921), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 169/178 (94%), Positives = 175/178 (98%)

Query: 1   MVTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60
           MVTFRFHQYQVVGRALP+ESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MVTFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 120
           LAINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMY EMASRHRVRS
Sbjct: 61  LAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYAEMASRHRVRS 120

Query: 121 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 178
           PCIQIIKTATIPAKLCKRES+KQFHNSKIKFPL FRKVRPP+RKL+TTYKA+RPNLFM
Sbjct: 121 PCIQIIKTATIPAKLCKRESSKQFHNSKIKFPLTFRKVRPPTRKLKTTYKASRPNLFM 178

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727627|ref|NP_001237679.1| uncharacterized protein LOC100306365 [Glycine max] gi|255628313|gb|ACU14501.1| unknown [Glycine max]

 Score =  358 bits (919), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 170/178 (95%), Positives = 175/178 (98%)

Query: 1   MVTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60
           MVTFRFHQYQVVGRALPTE+D HPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM
Sbjct: 1   MVTFRFHQYQVVGRALPTETDVHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVE MY EMASRHRVRS
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEHMYNEMASRHRVRS 120

Query: 121 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 178
           PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVF+KVRPP+RKL+TTYKAT+PNLFM
Sbjct: 121 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKATKPNLFM 178

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484993|gb|ABK94361.1| unknown [Populus trichocarpa]

 Score =  358 bits (919), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 169/178 (94%), Positives = 176/178 (98%)

Query: 1   MVTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60
           MV+FRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVR+KSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MVSFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRSKSKFWYFLRKLKKVKKSNGQI 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMY EMASRHRVRS
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRS 120

Query: 121 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 178
           PCIQIIKTATIPAKLCKR STKQFHNSKIKFPLVF+KVRPP+RKL+TTYKA+RPNLFM
Sbjct: 121 PCIQIIKTATIPAKLCKRGSTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 178

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147843375|emb|CAN82658.1| hypothetical protein VITISV_011977 [Vitis vinifera]

 Score =  357 bits (917), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 168/178 (94%), Positives = 175/178 (98%)

Query: 1   MVTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60
           MVTFRFHQYQVVGRALP+E+DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MVTFRFHQYQVVGRALPSETDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 120
           LAINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMY EMASRHRVRS
Sbjct: 61  LAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYAEMASRHRVRS 120

Query: 121 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 178
           PCIQIIKTATIPAKLCKRES+KQFHNSKIKFPL FRKVRPP+RKL+TTYKA+RPNLFM
Sbjct: 121 PCIQIIKTATIPAKLCKRESSKQFHNSKIKFPLTFRKVRPPTRKLKTTYKASRPNLFM 178

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	178
TAIR|locus:2040914	178	AT2G34480 [Arabidopsis thalian	1.0	1.0	0.926	1.6e-88
TAIR|locus:2089516	178	AT3G14600 [Arabidopsis thalian	0.983	0.983	0.925	1.1e-87
TAIR|locus:1005716700	178	AT1G29965 [Arabidopsis thalian	1.0	1.0	0.887	3.8e-85
TAIR|locus:2198269	312	RPL18AA "60S ribosomal protein	0.966	0.551	0.906	2.7e-84
DICTYBASE|DDB_G0285881	171	rpl18a "S60 ribosomal protein	0.932	0.970	0.561	6e-48
UNIPROTKB|F1NPD3	182	RPL18A "60S ribosomal protein	0.971	0.950	0.522	3.8e-46
UNIPROTKB|Q3T003	176	RPL18A "60S ribosomal protein	0.938	0.948	0.541	6.2e-46
UNIPROTKB|E2RL34	176	RPL18A "60S ribosomal protein	0.938	0.948	0.541	6.2e-46
UNIPROTKB|Q02543	176	RPL18A "60S ribosomal protein	0.938	0.948	0.541	6.2e-46
UNIPROTKB|F1S935	224	RPL18A "Uncharacterized protei	0.938	0.745	0.541	6.2e-46

TAIR|locus:2040914 AT2G34480 [Arabidopsis thaliana (taxid:3702)]

 Score = 884 (316.2 bits), Expect = 1.6e-88, P = 1.6e-88
 Identities = 165/178 (92%), Positives = 170/178 (95%)

Query:     1 MVTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60
             M  FRFHQYQVVGRALPTE D  PKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM
Sbjct:     1 MGAFRFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60

Query:    61 LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 120
             LAINEI+EKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR 
Sbjct:    61 LAINEIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query:   121 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 178
             PCIQIIKTAT+PAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKL+TTYKA +PNLFM
Sbjct:   121 PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKPNLFM 178

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0042545 "cell wall modification" evidence=RCA

TAIR|locus:2089516 AT3G14600 [Arabidopsis thaliana (taxid:3702)]

 Score = 876 (313.4 bits), Expect = 1.1e-87, P = 1.1e-87
 Identities = 162/175 (92%), Positives = 168/175 (96%)

Query:     4 FRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAI 63
             FRFHQYQVVGRALPTE+DEHPKIYRMKLW  NEV AKSKFWYF+RKLKKVKKSNGQMLAI
Sbjct:     4 FRFHQYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAI 63

Query:    64 NEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCI 123
             NEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNG VEQMYTEMASRHRVR PCI
Sbjct:    64 NEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCI 123

Query:   124 QIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 178
             QIIKTAT+PAKLCKRE TKQFHNSKIKFPLVFRKVRPPSRKL+TTYKA++PNLFM
Sbjct:   124 QIIKTATVPAKLCKREITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKPNLFM 178

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:1005716700 AT1G29965 [Arabidopsis thaliana (taxid:3702)]

 Score = 852 (305.0 bits), Expect = 3.8e-85, P = 3.8e-85
 Identities = 158/178 (88%), Positives = 166/178 (93%)

Query:     1 MVTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60
             M   R HQYQVVGRALPTE DE PKIYRMKLWATNEV AKSKFWY+LR+ KKVKKSNGQM
Sbjct:     1 MSVIRLHQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQM 60

Query:    61 LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 120
             LAINEIFEKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR 
Sbjct:    61 LAINEIFEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query:   121 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 178
             PCIQIIKTAT+PA LCKRESTKQFHNSKIKFPLVFRKVRPP+RKL+TT+KA +PNLFM
Sbjct:   121 PCIQIIKTATVPASLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLKTTFKANKPNLFM 178

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2198269 RPL18AA "60S ribosomal protein L18A-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 844 (302.2 bits), Expect = 2.7e-84, P = 2.7e-84
 Identities = 156/172 (90%), Positives = 164/172 (95%)

Query:     7 HQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEI 66
             HQYQVVGRALPTE DE PKIYRMKLWATNEV AKSKFWY+LR+ KKVKKSNGQMLAINEI
Sbjct:   141 HQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQMLAINEI 200

Query:    67 FEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQII 126
             FEKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR PCIQII
Sbjct:   201 FEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQII 260

Query:   127 KTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 178
             KTAT+PA LCKRESTKQFHNSKIKFPLVFRKVRPP+RKL+TT+KA +PNLFM
Sbjct:   261 KTATVPASLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLKTTFKANKPNLFM 312

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005829 "cytosol" evidence=RCA

GO:0006914 "autophagy" evidence=RCA

DICTYBASE|DDB_G0285881 rpl18a "S60 ribosomal protein L18a" [Dictyostelium discoideum (taxid:44689)]

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 96/171 (56%), Positives = 122/171 (71%)

Query:     7 HQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEI 66
             H++QVVGR +PTE D +PKIYRM+L+A   + AKS+FWYFL K+ K+KKS G++L + EI
Sbjct:     4 HEFQVVGRHVPTERDANPKIYRMRLFAQTSIHAKSRFWYFLSKIVKMKKSTGEILNVTEI 63

Query:    67 FEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQII 126
             FE  P K+KN+G+++RY SR+G HN+YKEYRD T  GAV QMY EMASRH  R   I II
Sbjct:    64 FEDKPQKVKNFGVFIRYNSRSGTHNIYKEYRDLTRCGAVSQMYDEMASRHSARESSIHII 123

Query:   127 KTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 177
                 I A L +R +TKQFH+SKIKFPL  R       K ++T+ A RPN F
Sbjct:   124 DIKEIAASLTRRANTKQFHDSKIKFPLTHRIA-----KSKSTFVANRPNTF 169

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|F1NPD3 RPL18A "60S ribosomal protein L18a" [Gallus gallus (taxid:9031)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 92/176 (52%), Positives = 124/176 (70%)

Query:     2 VTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQML 61
             V+ +  +Y+VVGR LPT     P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++
Sbjct:     9 VSLQLREYKVVGRCLPTPKCRTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIV 68

Query:    62 AINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSP 121
                +++EK P ++KN+GIWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+ 
Sbjct:    69 YCGQVYEKTPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAH 128

Query:   122 CIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 177
              IQI+K   I A  C+R + KQFH+SKIKFPL  R +R    K R T K  RPN F
Sbjct:   129 SIQIMKVEQIAASKCRRPAVKQFHDSKIKFPLPHRVLRR-QHKPRFTTK--RPNTF 181

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

UNIPROTKB|Q3T003 RPL18A "60S ribosomal protein L18a" [Bos taurus (taxid:9913)]

 Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 92/170 (54%), Positives = 122/170 (71%)

Query:     8 QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 67
             +Y+VVGR LPT     P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++   ++F
Sbjct:     9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVF 68

Query:    68 EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIK 127
             EK+P ++KN+GIWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQI+K
Sbjct:    69 EKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMK 128

Query:   128 TATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 177
                I A  C+R + KQFH+SKIKFPL  R +R    K R T K  RPN F
Sbjct:   129 VEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRR-QHKPRFTTK--RPNTF 175

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|E2RL34 RPL18A "60S ribosomal protein L18a" [Canis lupus familiaris (taxid:9615)]

 Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 92/170 (54%), Positives = 122/170 (71%)

Query:     8 QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 67
             +Y+VVGR LPT     P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++   ++F
Sbjct:     9 EYKVVGRCLPTPKCRTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVF 68

Query:    68 EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIK 127
             EK+P ++KN+GIWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQI+K
Sbjct:    69 EKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMK 128

Query:   128 TATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 177
                I A  C+R + KQFH+SKIKFPL  R +R    K R T K  RPN F
Sbjct:   129 VEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRR-QHKPRFTTK--RPNTF 175

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q02543 RPL18A "60S ribosomal protein L18a" [Homo sapiens (taxid:9606)]

 Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 92/170 (54%), Positives = 122/170 (71%)

Query:     8 QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 67
             +Y+VVGR LPT     P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++   ++F
Sbjct:     9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVF 68

Query:    68 EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIK 127
             EK+P ++KN+GIWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQI+K
Sbjct:    69 EKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMK 128

Query:   128 TATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 177
                I A  C+R + KQFH+SKIKFPL  R +R    K R T K  RPN F
Sbjct:   129 VEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRR-QHKPRFTTK--RPNTF 175

GO:0006412 "translation" evidence=NAS;TAS

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0003723 "RNA binding" evidence=TAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|F1S935 RPL18A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 92/170 (54%), Positives = 122/170 (71%)

Query:     8 QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 67
             +Y+VVGR LPT     P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++   ++F
Sbjct:    57 EYKVVGRCLPTPKCRTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVF 116

Query:    68 EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIK 127
             EK+P ++KN+GIWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQI+K
Sbjct:   117 EKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMK 176

Query:   128 TATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 177
                I A  C+R + KQFH+SKIKFPL  R +R    K R T K  RPN F
Sbjct:   177 VEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRR-QHKPRFTTK--RPNTF 223

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8WQI7	RL18A_SPOFR	No assigned EC number	0.5616	0.8202	0.8248	N/A	no
P62718	RL18A_RAT	No assigned EC number	0.5204	0.9438	0.9545	yes	no
Q9ATF5	RL18A_CASSA	No assigned EC number	0.9382	1.0	1.0	N/A	no
P0CX23	RL20A_YEAST	No assigned EC number	0.5028	0.9382	0.9709	yes	no
P0CX24	RL20B_YEAST	No assigned EC number	0.5028	0.9382	0.9709	yes	no
Q3T003	RL18A_BOVIN	No assigned EC number	0.5235	0.9382	0.9488	yes	no
P05732	RL20_SCHPO	No assigned EC number	0.4912	0.9550	0.9659	yes	no
P62717	RL18A_MOUSE	No assigned EC number	0.5204	0.9438	0.9545	yes	no
P51418	R18A2_ARATH	No assigned EC number	0.9269	1.0	1.0	yes	no
P41093	RL18A_DROME	No assigned EC number	0.5443	0.8876	0.8926	yes	no
Q9LUD4	R18A3_ARATH	No assigned EC number	0.9157	1.0	1.0	no	no
Q943F3	RL18A_ORYSJ	No assigned EC number	0.8876	1.0	1.0	yes	no
P0DJ18	RL18A_TETTH	No assigned EC number	0.5057	0.9775	0.9206	N/A	no
Q7ZWJ4	RL18A_DANRE	No assigned EC number	0.5117	0.9382	0.9488	yes	no
Q54MK8	RL18A_DICDI	No assigned EC number	0.5581	0.9382	0.9766	yes	no
Q02543	RL18A_HUMAN	No assigned EC number	0.5235	0.9382	0.9488	yes	no
O44480	RL18A_CAEEL	No assigned EC number	0.5298	0.8483	0.8388	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	178
COG2157	85	COG2157, RPL20A, Ribosomal protein L20A (L18A) [Tr	6e-16
pfam01775	55	pfam01775, Ribosomal_L18ae, Ribosomal L18ae/LX pro	8e-16

>gnl|CDD|225068 COG2157, RPL20A, Ribosomal protein L20A (L18A) [Translation, ribosomal structure and biogenesis]

 Score = 68.6 bits (168), Expect = 6e-16
 Identities = 27/85 (31%), Positives = 44/85 (51%)

Query: 68  EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIK 127
           E  P   +  GIW+ Y SR+G+H   KE R      A+E++Y++  SRH+V+   I+I +
Sbjct: 1   EPMPKIFRVKGIWIFYDSRSGWHKFTKEVRALKEEDAIEKVYSDFGSRHKVKRSSIKIEE 60

Query: 128 TATIPAKLCKRESTKQFHNSKIKFP 152
              I  +  +    K+     +KFP
Sbjct: 61  VEEIEPEDVEDPVVKRLLTEDLKFP 85

Length = 85

>gnl|CDD|216694 pfam01775, Ribosomal_L18ae, Ribosomal L18ae/LX protein domain

 Score = 67.6 bits (166), Expect = 8e-16
 Identities = 22/43 (51%), Positives = 30/43 (69%)

Query: 82  RYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 124
             +SR+G HN YKEYR     GAVE++Y+E+ SRHR++   IQ
Sbjct: 13  TEKSRSGTHNFYKEYRALNEEGAVEKVYSELGSRHRLKRSQIQ 55

This family includes eukaryotic L18ae as well as archaebacterial specific LX. Ribosomal protein L18ae forms part of the 60S ribosomal subunit. Length = 55

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	178
KOG0829	169	consensus 60S ribosomal protein L18A [Translation,	100.0
PF01775	124	Ribosomal_L18ae: Ribosomal L18ae/LX protein domain	100.0
PRK00773	76	rplX 50S ribosomal protein LX; Validated	100.0
COG2157	85	RPL20A Ribosomal protein L20A (L18A) [Translation,	99.96

>KOG0829 consensus 60S ribosomal protein L18A [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.9e-95  Score=589.25  Aligned_cols=169  Identities=64%  Similarity=1.057  Sum_probs=165.7

Q ss_pred             EEEEEEeecCCCCCCCCCceEEEEeeecCceeeehhhHHHHHHHhhhhccCcceEEEEEeccCCCceeeeeeEEEEEecC
Q 035537            7 HQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSR   86 (178)
Q Consensus         7 ~eY~Vvgr~lPt~k~p~p~ly~m~iFApn~vvAKSrFWyfl~~l~K~Kk~~GeIv~~~~i~Ek~p~~vKNfGIwlrY~Sr   86 (178)
                      +||+|+||+||||++|.|+||+|+|||||||+|||||||||+||+||||++||||+|+||+|++|+.|||||||||||||
T Consensus         1 kEY~VvGr~lPTe~~p~p~l~~m~ifa~N~V~AKsrfwyfl~~l~KvKks~Geiv~i~qi~E~~p~~vkNfGIwlrYdSR   80 (169)
T KOG0829|consen    1 KEYQVVGRALPTEKEPTPKLYRMRIFAPNHVVAKSRFWYFLSKLKKVKKSSGEIVAINQIFEKSPLKVKNFGIWLRYDSR   80 (169)
T ss_pred             CceEEeeeecCCCCCCCCceEEEEEeccceeehhHHHHHHHHHHHHHhhcCceEEEeceecCCCCceeeeeEEEEEEccC
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcceecceeeccCChhhHHHHHHHHhhhccccCCCCceEEEeeeeCCCccCCccccccccCCCcCcccccccCCCCcccc
Q 035537           87 TGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLR  166 (178)
Q Consensus        87 sgthNmyKEyRdlt~~gAV~q~Y~dmgsRHrar~~sIqIikVeeI~~~e~rrp~vkQf~~~kikFPl~~r~~~~~~~~~~  166 (178)
                      ||||||||||||+|.+|||||||+|||||||||+++||||+|+||++++|+|+.+|||||++|+||||||++..   +.+
T Consensus        81 sG~HNmYkEyRd~t~~gAV~q~y~dMaaRhRar~~~I~Iikv~~v~a~~~kR~~vkqFhd~kikFPL~~rv~~~---k~~  157 (169)
T KOG0829|consen   81 SGTHNMYKEYRDTTRVGAVEQCYRDMAARHRARFRSIQIIKVAEVPAEDCKRAYVKQFHDSKIKFPLPHRVVNR---KSK  157 (169)
T ss_pred             CcchHHHHHHHHhhhhhHHHHHHHHHHHHhhhcccceeEEEEeeeeHHHhchHHHHHhhccCcccccccccccc---ccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998866   557


Q ss_pred             CceeecCCCCCC
Q 035537          167 TTYKATRPNLFM  178 (178)
Q Consensus       167 ~~F~~~rP~t~~  178 (178)
                      ++|++.||||||
T Consensus       158 ~~fs~~rP~tf~  169 (169)
T KOG0829|consen  158 KTFSTKRPSTFF  169 (169)
T ss_pred             cccccCCCcccC
Confidence            899999999997

>PF01775 Ribosomal_L18ae: Ribosomal L18ae/LX protein domain; InterPro: IPR023573 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=1.5e-72  Score=441.46  Aligned_cols=124  Identities=64%  Similarity=1.124  Sum_probs=112.4

Q ss_pred             eEEEEEEeecCCCCCCCCCceEEEEeeecCceeeehhhHHHHHHHhhhhccCcceEEEEEeccCCCceeeeeeEEEEEec
Q 035537            6 FHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQS   85 (178)
Q Consensus         6 l~eY~Vvgr~lPt~k~p~p~ly~m~iFApn~vvAKSrFWyfl~~l~K~Kk~~GeIv~~~~i~Ek~p~~vKNfGIwlrY~S   85 (178)
                      |+||+|+||+||||++|+|+||+|+|||||+|+|||||||||+||+|+||++||||+|++|+|++|+.||||||||+|||
T Consensus         1 l~ey~vvgr~lpt~k~~~p~iy~m~ifa~n~vvAkSrfwy~~~~~~K~Kk~~geiv~~~~i~ek~p~~VKnfgI~lry~s   80 (124)
T PF01775_consen    1 LKEYQVVGRKLPTEKEPNPPIYRMRIFAPNHVVAKSRFWYFLRKLKKMKKTSGEIVSCKEIFEKNPTKVKNFGIWLRYDS   80 (124)
T ss_dssp             -EEEEEEEEETT-STTS---EEEEEEEESSHHHHHHHHHHHHHHCTS--STTEEEEEEEEE-SSSTTS-EEEEEEEEEEE
T ss_pred             CeEEEEEEecCCCCCCCCCCeEEEEEecCCcEEEEhhHHHHHHHHHhhhcccceEEEeEcccCCCCcceeEEEEEEEEec
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcceecceeeccCChhhHHHHHHHHhhhccccCCCCceEEEee
Q 035537           86 RTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTA  129 (178)
Q Consensus        86 rsgthNmyKEyRdlt~~gAV~q~Y~dmgsRHrar~~sIqIikVe  129 (178)
                      |+|+|||||||||+|++|||||||+||||||++|+++|||++|+
T Consensus        81 r~g~~nfyKEyra~s~~~Aveq~YsdmGSrHrvkr~~I~I~~Ve  124 (124)
T PF01775_consen   81 RSGTHNFYKEYRALSENGAVEQVYSDMGSRHRVKRSSIQIIKVE  124 (124)
T ss_dssp             SSCEEEEEEEEEESCHHHHHHHHHHHHHHTTT--GGGEEEEEEE
T ss_pred             CCccEEEEEEeccCCHHHHHHHHHHHhhhhhCCCccceEEEEeC
Confidence            99999999999999999999999999999999999999999996

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents the eukaryotic 60S ribosomal protein L18ae [] and the archaea 50S ribosomal protein LX. Rat ribosomal protein L18 is homologous to Xenopus laevis L14 [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 4A1D_X 4A1B_X 4A18_X 4A19_X 2JXT_A 3IZR_S 3IZS_S.

>PRK00773 rplX 50S ribosomal protein LX; Validated

Probab=100.00  E-value=3.6e-34  Score=208.01  Aligned_cols=73  Identities=19%  Similarity=0.351  Sum_probs=71.8

Q ss_pred             eeeeeEEEEEecCCcceecceeeccCChhhHHHHHHHHhhhccccCCCCceEEEeeeeCCCccCCcccccccc
Q 035537           74 IKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHN  146 (178)
Q Consensus        74 vKNfGIwlrY~SrsgthNmyKEyRdlt~~gAV~q~Y~dmgsRHrar~~sIqIikVeeI~~~e~rrp~vkQf~~  146 (178)
                      +||||||++|+||+|+|||||||||++++|||||||+||||||++++++|+|++|+||+++||+||+++||+.
T Consensus         2 ~k~f~V~g~~~~~~~~~~f~Ke~ra~~~~~Ave~~Ys~~gSrH~~kr~~I~I~~V~ei~~~e~~~~~vkq~~~   74 (76)
T PRK00773          2 MKIYRVKGTFLAGDEWQKFTKEVRALNEKDALEKVYSLFGSKHKVKRTQIKIEEVSEISPEEAEDPRVRELAK   74 (76)
T ss_pred             ceEEEEEEEEEcCCCeEEEEEEEecCCHHHHHHHHHHHHHhhcCCCcccEEEEEEEEeCHHHcCCHHHHHHhh
Confidence            7999999999999999999999999999999999999999999999999999999999999999999999974

>COG2157 RPL20A Ribosomal protein L20A (L18A) [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=2.8e-30  Score=191.42  Aligned_cols=84  Identities=31%  Similarity=0.601  Sum_probs=81.6

Q ss_pred             CCCceeeeeeEEEEEecCCcceecceeeccCChhhHHHHHHHHhhhccccCCCCceEEEeeeeCCCccCCccccccccCC
Q 035537           69 KNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSK  148 (178)
Q Consensus        69 k~p~~vKNfGIwlrY~SrsgthNmyKEyRdlt~~gAV~q~Y~dmgsRHrar~~sIqIikVeeI~~~e~rrp~vkQf~~~k  148 (178)
                      ..|..++|+|||+.|||++|+||||||+||+++++|+|.+||||||||++++++|+|++|+||+++|+.||.|+||++.+
T Consensus         2 ~~~K~f~V~G~~~~~~~~~~~~kf~Kevra~~e~~AiE~vYS~~gsrhkvkR~~I~I~~V~Ei~pedv~d~~vk~L~~~~   81 (85)
T COG2157           2 PMPKIFRVKGIWIFYDSRSGWHKFTKEVRALKEEDAIEKVYSDFGSRHKVKRSSIKIEEVEEIEPEDVEDPVVKRLLTED   81 (85)
T ss_pred             CcceEEEEeeEEEEecCCCcceehhHHhhhcCHHHHHHHHHHHhhhhccccccceeEEEEEecChhhcccHHHHHHhccc
Confidence            45778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCc
Q 035537          149 IKFP  152 (178)
Q Consensus       149 ikFP  152 (178)
                      ++||
T Consensus        82 ~~~~   85 (85)
T COG2157          82 LKFP   85 (85)
T ss_pred             ccCC
Confidence            9998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	178
3izr_S	178	Localization Of The Large Subunit Ribosomal Protein		1e-92
3izs_S	167	Localization Of The Large Subunit Ribosomal Protein		1e-86
4a18_X	189	T.Thermophila 60s Ribosomal Subunit In Complex With		3e-47
3u5e_S	172	The Structure Of The Eukaryotic Ribosome At 3.0 A R		7e-45
3zf7_S	179	High-resolution Cryo-electron Microscopy Structure		1e-27

>pdb|3IZR|S Chain S, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 178

Iteration: 1
 Score =  335 bits (858), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 158/178 (88%), Positives = 168/178 (94%)
Query: 1   MVTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60
           M  FRFHQYQVVGR LPT +DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MGAFRFHQYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60
Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 120
           LAINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR 
Sbjct: 61  LAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120
Query: 121 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 178
           PCIQIIKTAT+  KLCKR++TKQFH S IKFPLV+RKVRPP+RKL+TT+KA+RPNLFM
Sbjct: 121 PCIQIIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTFKASRPNLFM 178

>pdb|3IZS|S Chain S, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 167

Iteration: 1
 Score =  315 bits (806), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 149/167 (89%), Positives = 157/167 (94%)
Query: 1   MVTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60
           M  FRFHQYQVVGR LPT +DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MGAFRFHQYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60
Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 120
           LAINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR 
Sbjct: 61  LAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120
Query: 121 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRT 167
           PCIQIIKTAT+  KLCKR++TKQFH S IKFPLV+RKVRPP+RKL+T
Sbjct: 121 PCIQIIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLKT 167

>pdb|4A18|X Chain X, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 189

Iteration: 1
 Score =  184 bits (466), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 88/174 (50%), Positives = 118/174 (67%)
Query: 4   FRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAI 63
            +  QY V    LP E    P+I +M+++A +EV AK+KFWY +RKL K+K+S G++L++
Sbjct: 16  MKVRQYVVSAARLPIEQGTKPEILQMRVFARDEVHAKTKFWYNMRKLNKIKRSQGRILSV 75
Query: 64  NEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCI 123
           NEI+EK+   +K YGI L+YQSRT  HNMYKEYRD +LNGAV Q+  +MA  HR +   I
Sbjct: 76  NEIYEKSLNTVKTYGIVLKYQSRTAIHNMYKEYRDVSLNGAVSQLIQDMAGNHRAQPDTI 135
Query: 124 QIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 177
           QII+TAT+  K  KR +T    N+ +KFP+V    RP  +K RT YKATRP  F
Sbjct: 136 QIIRTATLEPKDIKRPATLAMRNAALKFPIVKTIHRPSEKKYRTVYKATRPTTF 189

>pdb|3U5E|S Chain S, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 60s Subunit, Ribosome A Length = 172

Iteration: 1
 Score =  176 bits (446), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 87/173 (50%), Positives = 121/173 (69%), Gaps = 6/173 (3%)
Query: 6   FHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINE 65
           F +YQV+GR LPTES   PK++RM+++A+NEV AKS++WYFL+KL KVKK++G++++IN+
Sbjct: 4   FKEYQVIGRRLPTESVPEPKLFRMRIFASNEVIAKSRYWYFLQKLHKVKKASGEIVSINQ 63
Query: 66  IFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQI 125
           I E +PTK+KN+G+W+RY SR+G HNMYKE RD +   AVE +Y +MA+RHR R   I I
Sbjct: 64  INEAHPTKVKNFGVWVRYDSRSGTHNMYKEIRDVSRVAAVETLYQDMAARHRARFRSIHI 123
Query: 126 IKTATIPAKL-CKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 177
           +K A I      KR+  KQF    +KFPL  R      +K   T+   RP+ F
Sbjct: 124 LKVAEIEKTADVKRQYVKQFLTKDLKFPLPHR-----VQKSTKTFSYKRPSTF 171

>pdb|3ZF7|S Chain S, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 179

Iteration: 1
 Score =  118 bits (296), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 64/170 (37%), Positives = 99/170 (58%), Gaps = 3/170 (1%)
Query: 1   MVTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60
           MV      Y VVGR  P+E +  P +Y+ +++A N V AKS+FW  +R+  KVK ++G +
Sbjct: 1   MVRPHLRHYCVVGRETPSEKNPQPTVYKFEVFAPNFVVAKSRFWRMMREKNKVKSTHGDV 60
Query: 61  LAINEIFEKNPTKIKNYGIWLRYQS-RTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR 119
           L+  ++ +      +NY + + Y S R GY +M KE+RD    GAV Q Y ++ASRHR R
Sbjct: 61  LSC-KVVKDRKLAARNYSVDIAYYSQRCGYTHMVKEFRDVCKAGAVSQAYNDLASRHRAR 119
Query: 120 SPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTY 169
              I+++   +IP    +R +  QFH   + FPL+ R+V+ P RK R  +
Sbjct: 120 YHNIEVLGVKSIPNHEVRRLNVAQFHPHNLSFPLLQRRVKAP-RKDRVIF 168
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	178
3iz5_S	178	60S ribosomal protein L18A (L18AE); eukaryotic rib	2e-86
4a18_X	189	RPL18A, 60S ribosomal protein L36; ribosome, eukar	5e-81
3u5e_S	172	L18A, 60S ribosomal protein L20-A; translation, ri	6e-77
4adx_G	78	RPLX; ribosome, protein synthesis; 6.60A {Methanot	6e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06

>4a18_X RPL18A, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_X 4a1b_X 4a1d_X Length = 189

 Score =  237 bits (606), Expect = 5e-81
 Identities = 88/176 (50%), Positives = 119/176 (67%)

Query: 2   VTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQML 61
           +  +  QY V    LP E    P+I +M+++A +EV AK+KFWY +RKL K+K+S G++L
Sbjct: 14  LQMKVRQYVVSAARLPIEQGTKPEILQMRVFARDEVHAKTKFWYNMRKLNKIKRSQGRIL 73

Query: 62  AINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSP 121
           ++NEI+EK+   +K YGI L+YQSRT  HNMYKEYRD +LNGAV Q+  +MA  HR +  
Sbjct: 74  SVNEIYEKSLNTVKTYGIVLKYQSRTAIHNMYKEYRDVSLNGAVSQLIQDMAGNHRAQPD 133

Query: 122 CIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 177
            IQII+TAT+  K  KR +T    N+ +KFP+V    RP  +K RT YKATRP  F
Sbjct: 134 TIQIIRTATLEPKDIKRPATLAMRNAALKFPIVKTIHRPSEKKYRTVYKATRPTTF 189

>3u5e_S L18A, 60S ribosomal protein L20-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_S Length = 172

 Score =  226 bits (577), Expect = 6e-77
 Identities = 87/174 (50%), Positives = 121/174 (69%), Gaps = 6/174 (3%)

Query: 5   RFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAIN 64
            F +YQV+GR LPTES   PK++RM+++A+NEV AKS++WYFL+KL KVKK++G++++IN
Sbjct: 3   HFKEYQVIGRRLPTESVPEPKLFRMRIFASNEVIAKSRYWYFLQKLHKVKKASGEIVSIN 62

Query: 65  EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQ 124
           +I E +PTK+KN+G+W+RY SR+G HNMYKE RD +   AVE +Y +MA+RHR R   I 
Sbjct: 63  QINEAHPTKVKNFGVWVRYDSRSGTHNMYKEIRDVSRVAAVETLYQDMAARHRARFRSIH 122

Query: 125 IIKTATI-PAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 177
           I+K A I      KR+  KQF    +KFPL  R      +K   T+   RP+ F
Sbjct: 123 ILKVAEIEKTADVKRQYVKQFLTKDLKFPLPHR-----VQKSTKTFSYKRPSTF 171

>4adx_G RPLX; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2jxt_A Length = 78

 Score = 52.3 bits (125), Expect = 6e-10
 Identities = 14/71 (19%), Positives = 27/71 (38%)

Query: 73  KIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIP 132
           K K + +  ++          KE          E++Y+E  S+HRV    ++I +   I 
Sbjct: 4   KTKIFRVKGKFLMGDKLQPFTKELNAIREEEIYERLYSEFGSKHRVPRSKVKIEEIEEIS 63

Query: 133 AKLCKRESTKQ 143
            +  +    K 
Sbjct: 64  PEEVQDPVVKA 74

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 1e-06
 Identities = 29/187 (15%), Positives = 51/187 (27%), Gaps = 51/187 (27%)

Query: 20  SDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGI 79
            +E   I   K            FW  L K +++ +       + E+   N      Y  
Sbjct: 48  KEEIDHIIMSK---DAVSGTLRLFWTLLSKQEEMVQK-----FVEEVLRIN------YK- 92

Query: 80  WL------RYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTA---- 129
           +L        +  +    MY E RD   N    Q++ +    +  R      ++ A    
Sbjct: 93  FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN--QVFAK---YNVSRLQPYLKLRQALLEL 147

Query: 130 -----------------TIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPS---RKLRTTY 169
                             +   +C     +   + KI F L  +    P      L+   
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI-FWLNLKNCNSPETVLEMLQKLL 206

Query: 170 KATRPNL 176
               PN 
Sbjct: 207 YQIDPNW 213

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	178
3iz5_S	178	60S ribosomal protein L18A (L18AE); eukaryotic rib	100.0
3u5e_S	172	L18A, 60S ribosomal protein L20-A; translation, ri	100.0
4a18_X	189	RPL18A, 60S ribosomal protein L36; ribosome, eukar	100.0
3j21_l	77	50S ribosomal protein LX; archaea, archaeal, KINK-	100.0
4adx_G	78	RPLX; ribosome, protein synthesis; 6.60A {Methanot	100.0

>3u5e_S L18A, 60S ribosomal protein L20-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_S 4b6a_S

Probab=100.00  E-value=4.1e-100  Score=623.03  Aligned_cols=170  Identities=51%  Similarity=0.889  Sum_probs=166.7

Q ss_pred             eeeEEEEEEeecCCCCCCCCCceEEEEeeecCceeeehhhHHHHHHHhhhhccCcceEEEEEeccCCCceeeeeeEEEEE
Q 035537            4 FRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRY   83 (178)
Q Consensus         4 ~~l~eY~Vvgr~lPt~k~p~p~ly~m~iFApn~vvAKSrFWyfl~~l~K~Kk~~GeIv~~~~i~Ek~p~~vKNfGIwlrY   83 (178)
                      +.|+||+||||+||||++|+|+||+|+|||||+|||||||||||+||+||||++||||+|++|+|++|+.||||||||||
T Consensus         2 ~~l~eY~VvGr~lPt~k~~~p~lyrm~iFApn~vvAKSrFWyfl~~l~K~Kks~GeIv~~~~i~Ek~p~~VKNfGIwlrY   81 (172)
T 3u5e_S            2 AHFKEYQVIGRRLPTESVPEPKLFRMRIFASNEVIAKSRYWYFLQKLHKVKKASGEIVSINQINEAHPTKVKNFGVWVRY   81 (172)
T ss_dssp             CSCEEEEEEECCCCBTTBCSCCCEEEEEEESSHHHHHHHHHHHHTTTSSCCGGGCCEEEEEECCCSSTTSCEEEEEEEEE
T ss_pred             CccEEEEEEEecCCCCCCCCCCeEEEEecCCCcEEEeehHHHHHHHHhhhhcccceEEEEEEEccCCCceeEEeeEEEEE
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcceecceeeccCChhhHHHHHHHHhhhccccCCCCceEEEeeee-CCCccCCccccccccCCCcCcccccccCCCC
Q 035537           84 QSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATI-PAKLCKRESTKQFHNSKIKFPLVFRKVRPPS  162 (178)
Q Consensus        84 ~SrsgthNmyKEyRdlt~~gAV~q~Y~dmgsRHrar~~sIqIikVeeI-~~~e~rrp~vkQf~~~kikFPl~~r~~~~~~  162 (178)
                      |||||||||||||||+|++|||+|||+|||||||||+++||||+|+|| +++||+||+|+||||++||||||||+++.  
T Consensus        82 dSrsgtHNmYKEyRdlt~~gAV~q~Y~dMgsRHRar~~sIqIikVeeI~~~~~~rrp~vkQf~~skikFPl~hrv~~~--  159 (172)
T 3u5e_S           82 DSRSGTHNMYKEIRDVSRVAAVETLYQDMAARHRARFRSIHILKVAEIEKTADVKRQYVKQFLTKDLKFPLPHRVQKS--  159 (172)
T ss_dssp             ECSSCEEEEEEEEEESSHHHHHHHHHHHHHHHHCCCGGGEEEEEEEECCSTTSCCCHHHHGGGSTTCEEECCSCCCCC--
T ss_pred             cccCCccccchhhhhccHHHHHHHHHHHhhhhhcccccceEEeeeEEEcchhcCCChhhHhhhcCCCccccccccccC--
Confidence            999999999999999999999999999999999999999999999999 89999999999999999999999999875  


Q ss_pred             ccccCceeecCCCCCC
Q 035537          163 RKLRTTYKATRPNLFM  178 (178)
Q Consensus       163 ~~~~~~F~~~rP~t~~  178 (178)
                         +++|+++||+|||
T Consensus       160 ---~~~F~~~rP~t~~  172 (172)
T 3u5e_S          160 ---TKTFSYKRPSTFY  172 (172)
T ss_dssp             ---SSSCBSSCCCCCC
T ss_pred             ---CCceeccCCCCCC
Confidence               4899999999997

>4a18_X RPL18A, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_X 4a1b_X 4a1d_X

Probab=100.00  E-value=1.2e-99  Score=627.41  Aligned_cols=174  Identities=51%  Similarity=0.846  Sum_probs=171.1

Q ss_pred             eeeEEEEEEeecCCCCCCCCCceEEEEeeecCceeeehhhHHHHHHHhhhhccCcceEEEEEeccCCCceeeeeeEEEEE
Q 035537            4 FRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRY   83 (178)
Q Consensus         4 ~~l~eY~Vvgr~lPt~k~p~p~ly~m~iFApn~vvAKSrFWyfl~~l~K~Kk~~GeIv~~~~i~Ek~p~~vKNfGIwlrY   83 (178)
                      +.|+||+||||+||||++|+|+||+|+|||||+|||||||||||+||+||||++||||+|++|+|++|+.||||||||||
T Consensus        16 ~~l~eY~VvGr~lPt~k~p~P~lyrM~iFApn~VvAKSrFWyfl~~l~K~Kks~GeIv~~~~i~Ek~p~~VKNfGIwlrY   95 (189)
T 4a18_X           16 MKVRQYVVSAARLPIEQGTKPEILQMRVFARDEVHAKTKFWYNMRKLNKIKRSQGRILSVNEIYEKSLNTVKTYGIVLKY   95 (189)
T ss_dssp             CCCEEEEEEEEETTCCTTSCCCEEEEEEEESSHHHHHHHHHHHHHHHSSCCSTTEEEEEEEEECCSCTTSCEEEEEEEEE
T ss_pred             cceEEEEEEEecCCCCCCCCCCeEEEEecCCCcEEEeehHHHHHHHHHhhhhccceEEEEEEEccCCCceeEEeeEEEEE
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcceecceeeccCChhhHHHHHHHHhhhccccCCCCceEEEeeeeCCCccCCccccccccCCCcCcccccccCCCCc
Q 035537           84 QSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSR  163 (178)
Q Consensus        84 ~SrsgthNmyKEyRdlt~~gAV~q~Y~dmgsRHrar~~sIqIikVeeI~~~e~rrp~vkQf~~~kikFPl~~r~~~~~~~  163 (178)
                      |||||||||||||||+|++|||+|||+|||||||||+++||||+|+||+++||+||+|+|||+++|+||||||+++.+++
T Consensus        96 dSRsgtHNmYKEYRdlt~~gAV~q~Y~dMgsRHRar~~sIqIikVeeI~~~~~rrp~vkQf~~skikFPl~hrv~~~~~~  175 (189)
T 4a18_X           96 QSRTAIHNMYKEYRDVSLNGAVSQLIQDMAGNHRAQPDTIQIIRTATLEPKDIKRPATLAMRNAALKFPIVKTIHRPSEK  175 (189)
T ss_dssp             ECSSCEEEEEEEEEESCHHHHHHHHHHHHHHTTCCCGGGCEEEEEEECCGGGCCCHHHHTTCCSCCEEECCCCCCCCSSG
T ss_pred             cccCCccccchhhhhccHHHHHHHHHHHhhhhhcccccceEEEEEEEECHHHccCHHHHHHhccCCccccceeecccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988767


Q ss_pred             cccCceeecCCCCC
Q 035537          164 KLRTTYKATRPNLF  177 (178)
Q Consensus       164 ~~~~~F~~~rP~t~  177 (178)
                      +++++|+++||+||
T Consensus       176 ~~~~~F~~~rP~t~  189 (189)
T 4a18_X          176 KYRTVYKATRPTTF  189 (189)
T ss_dssp             GGCCSSCSSCCCCC
T ss_pred             cccceeeccCCCCC
Confidence            78899999999997

>3j21_l 50S ribosomal protein LX; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=2.4e-37  Score=224.27  Aligned_cols=74  Identities=19%  Similarity=0.302  Sum_probs=72.4

Q ss_pred             eeeeeeEEEEEecCCcceecceeeccCChhhHHHHHHHHhhhccccCCCCceEEEeeeeCCCccCCcccccccc
Q 035537           73 KIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHN  146 (178)
Q Consensus        73 ~vKNfGIwlrY~SrsgthNmyKEyRdlt~~gAV~q~Y~dmgsRHrar~~sIqIikVeeI~~~e~rrp~vkQf~~  146 (178)
                      .|||||||++|+||+|+|||||||||++++|||||||+||||||++|+++|||++|+||+++||+||+|+||+.
T Consensus         2 ~vK~f~V~g~y~~r~~~~~f~KE~ra~~~~~Ave~~Yse~gsrHr~kr~~I~I~~V~eI~~~e~~~~~vkql~~   75 (77)
T 3j21_l            2 KVKVFRVHGYFEKNGRKFKFTKEYRGIKEEDVKELVYSDIGSKHKVKRNKIFIKEIKEIRPEEAEDIVVRRLSL   75 (77)
T ss_dssp             CCCEEEEEEEEEETTEEEEEEEEEECSSHHHHHHHHHHHHHHHTTCCTTSEEEEEEEEECTTCCSSHHHHHHTT
T ss_pred             ceEEEEEEEEEEcCCCeEeEEEEEecCCHhHHHHHHHHHHhhhhCCCccceEEEEEEEeCHHHcCCHHHHHHHh
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999974

>4adx_G RPLX; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2jxt_A

Probab=100.00  E-value=6.5e-35  Score=211.91  Aligned_cols=74  Identities=19%  Similarity=0.262  Sum_probs=72.7

Q ss_pred             eeeeeeEEEEEecCCcceecceeeccCChhhHHHHHHHHhhhccccCCCCceEEEeeeeCCCccCCcccccccc
Q 035537           73 KIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHN  146 (178)
Q Consensus        73 ~vKNfGIwlrY~SrsgthNmyKEyRdlt~~gAV~q~Y~dmgsRHrar~~sIqIikVeeI~~~e~rrp~vkQf~~  146 (178)
                      .|||||||++|+|++|+|||||||||++++||||+||+||||||++++++|+|++|+||+++||+||+|+||+.
T Consensus         4 ~vK~f~V~g~~~~r~~~~~f~KE~ra~~~~~Ave~~Yse~gSrHrvkr~~I~I~~V~eI~~~e~~~~~ikql~~   77 (78)
T 4adx_G            4 KTKIFRVKGKFLMGDKLQPFTKELNAIREEEIYERLYSEFGSKHRVPRSKVKIEEIEEISPEEVQDPVVKALVQ   77 (78)
T ss_pred             eeEEEEEEEEEEcCCCeEEEEEEEecCCHHHHHHHHHHHHHhhcCCCccceEEEEEEEeCHHHcCCHHHHHHhc
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	178
d2jxta1	78	d.355.1.1 (A:1-78) Ribosomal protein LX, RplX {Met	3e-26

>d2jxta1 d.355.1.1 (A:1-78) Ribosomal protein LX, RplX {Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 78

class: Alpha and beta proteins (a+b)
fold: RplX-like
superfamily: RplX-like
family: RplX-like
domain: Ribosomal protein LX, RplX
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 93.3 bits (232), Expect = 3e-26
 Identities = 14/73 (19%), Positives = 27/73 (36%)

Query: 72  TKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATI 131
            K K + +  ++          KE          E++Y+E  S+HRV    ++I +   I
Sbjct: 3   MKTKIFRVKGKFLMGDKLQPFTKELNAIREEEIYERLYSEFGSKHRVPRSKVKIEEIEEI 62

Query: 132 PAKLCKRESTKQF 144
             +  +    K  
Sbjct: 63  SPEEVQDPVVKAL 75

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	178
d2jxta1	78	Ribosomal protein LX, RplX {Methanobacterium therm	99.97

>d2jxta1 d.355.1.1 (A:1-78) Ribosomal protein LX, RplX {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: RplX-like
superfamily: RplX-like
family: RplX-like
domain: Ribosomal protein LX, RplX
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.97  E-value=7.8e-33  Score=199.34  Aligned_cols=75  Identities=19%  Similarity=0.255  Sum_probs=73.4

Q ss_pred             ceeeeeeEEEEEecCCcceecceeeccCChhhHHHHHHHHhhhccccCCCCceEEEeeeeCCCccCCcccccccc
Q 035537           72 TKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHN  146 (178)
Q Consensus        72 ~~vKNfGIwlrY~SrsgthNmyKEyRdlt~~gAV~q~Y~dmgsRHrar~~sIqIikVeeI~~~e~rrp~vkQf~~  146 (178)
                      ..|||||||++|.|++|+|||||||||+++++|+++||+||||||++++++|+|++|+||+++||++|+|+||++
T Consensus         3 m~vK~y~V~G~~~~~~~~q~f~ke~ra~~~~~A~e~~Ys~~gSrHr~kr~~I~I~~V~eI~~~e~~~p~vkqll~   77 (78)
T d2jxta1           3 MKTKIFRVKGKFLMGDKLQPFTKELNAIREEEIYERLYSEFGSKHRVPRSKVKIEEIEEISPEEVQDPVVKALVQ   77 (78)
T ss_dssp             CSCEEEEEEEEEEETTEEEEEEEEEEESSHHHHHHHHHHHHHHHTCCCGGGEEEEEEEEECGGGCCCHHHHHHHH
T ss_pred             ceEEEEEEEEEEEcCCCccceEEEEecCCHHHHHHHHHHHHhhhcCCCccceEEEEEEEEChHHcCCHHHHHHhh
Confidence            469999999999999999999999999999999999999999999999999999999999999999999999986