Citrus Sinensis ID: 035548
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 518 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SBA7 | 507 | Sugar transport protein 8 | yes | no | 0.974 | 0.996 | 0.620 | 0.0 | |
| Q9SFG0 | 507 | Sugar transport protein 6 | no | no | 0.963 | 0.984 | 0.610 | 1e-178 | |
| Q9LNV3 | 498 | Sugar transport protein 2 | no | no | 0.932 | 0.969 | 0.620 | 1e-168 | |
| Q94AZ2 | 526 | Sugar transport protein 1 | no | no | 0.965 | 0.950 | 0.546 | 1e-163 | |
| O04249 | 513 | Sugar transport protein 7 | no | no | 0.955 | 0.964 | 0.516 | 1e-152 | |
| Q9LT15 | 514 | Sugar transport protein 1 | no | no | 0.936 | 0.943 | 0.521 | 1e-150 | |
| Q9SX48 | 517 | Sugar transport protein 9 | no | no | 0.944 | 0.945 | 0.516 | 1e-148 | |
| Q9FMX3 | 514 | Sugar transport protein 1 | no | no | 0.947 | 0.955 | 0.537 | 1e-147 | |
| Q41144 | 523 | Sugar carrier protein C O | N/A | no | 0.963 | 0.954 | 0.510 | 1e-143 | |
| P23586 | 522 | Sugar transport protein 1 | no | no | 0.972 | 0.965 | 0.486 | 1e-141 |
| >sp|Q9SBA7|STP8_ARATH Sugar transport protein 8 OS=Arabidopsis thaliana GN=STP8 PE=2 SV=2 | Back alignment and function desciption |
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Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/506 (62%), Positives = 384/506 (75%), Gaps = 1/506 (0%)
Query: 3 AIALSETGNGKDFPAKLTGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVY 62
A+ +S GN K F AK+T V +C IIAA GGL+FGYDIGIS GVT MDDFL +FFP VY
Sbjct: 2 AVVISSNGNSKSFDAKMTVYVFICVIIAAVGGLIFGYDIGISGGVTAMDDFLKEFFPSVY 61
Query: 63 EKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIG 122
E+K A E+NYCKYDNQ+LQLFTSSLYLAA+VA F AS C K GR+PT+Q AS+FFLIG
Sbjct: 62 ERKKHAHENNYCKYDNQFLQLFTSSLYLAALVASFFASATCSKLGRRPTMQLASIFFLIG 121
Query: 123 AILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGIL 182
L A N+ MLI GR+ LG GVGFGNQAVPLF+SEIAP + RGGLNI FQL++T+GIL
Sbjct: 122 VGLAAGAVNIYMLIIGRILLGFGVGFGNQAVPLFLSEIAPARLRGGLNIVFQLMVTIGIL 181
Query: 183 AANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTLRK 242
AN++NY TS IHPYGWRI+LGGA +PAL LL GS +I ETP SLIER K ++G TL+K
Sbjct: 182 IANIVNYFTSSIHPYGWRIALGGAGIPALILLFGSLLICETPTSLIERNKTKEGKETLKK 241
Query: 243 IRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMF 302
IRGV+DV++EY I A +I+ +K PY LMK +SRP + G + QQ TGIN +MF
Sbjct: 242 IRGVEDVDEEYESIVHACDIARQVKDPYTKLMKPASRPPFVIGMLLQFFQQFTGINAIMF 301
Query: 303 YAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCA 362
YAPVLFQT+G+G++A+LLSAV++GTINV ST V I LVDK GR+ LL+Q+++ M+ICQ
Sbjct: 302 YAPVLFQTVGFGNDAALLSAVVTGTINVLSTFVGIFLVDKTGRRFLLLQSSVHMLICQLV 361
Query: 363 IGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYF 422
IG+IL L T T+ A VVVI VCV+V GFAWSWGP+ WLI SE +PLETR G+
Sbjct: 362 IGIILAKDLDVTGTLARPQALVVVIFVCVYVMGFAWSWGPLGWLIPSETFPLETRTEGFA 421
Query: 423 FAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLISLIFSATMLPETKGIPIDEMVD 482
AVS NM FTFVIAQAFLSMLC M+ GIFFFF+GW+++ +F+ +PETKG+ ID+M D
Sbjct: 422 LAVSCNMFFTFVIAQAFLSMLCAMKSGIFFFFSGWIVVMGLFALFFVPETKGVSIDDMRD 481
Query: 483 RAWKKHWYWKSY-FKNDNHDGSKRTE 507
WK HWYWK + + D HD KRT+
Sbjct: 482 SVWKLHWYWKRFMLEEDEHDVEKRTD 507
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SFG0|STP6_ARATH Sugar transport protein 6 OS=Arabidopsis thaliana GN=STP6 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 624 bits (1608), Expect = e-178, Method: Compositional matrix adjust.
Identities = 306/501 (61%), Positives = 380/501 (75%), Gaps = 2/501 (0%)
Query: 8 ETGNGKDFPAKLTGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHR 67
N F AK+T V +C +IAA GGL+FGYDIGIS GV+ MDDFL +FFP V+E+K
Sbjct: 6 SNANAPAFEAKMTVYVFICVMIAAVGGLIFGYDIGISGGVSAMDDFLKEFFPAVWERKKH 65
Query: 68 AKEDNYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNC 127
E+NYCKYDNQ+LQLFTSSLYLAA+VA F+AS C K GR+PT+Q AS+FFLIG L
Sbjct: 66 VHENNYCKYDNQFLQLFTSSLYLAALVASFVASATCSKLGRRPTMQFASIFFLIGVGLTA 125
Query: 128 LAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLI 187
A NL MLI GRL LG GVGFGNQAVPLF+SEIAP + RGGLNI FQL++T+GIL AN++
Sbjct: 126 GAVNLVMLIIGRLFLGFGVGFGNQAVPLFLSEIAPAQLRGGLNIVFQLMVTIGILIANIV 185
Query: 188 NYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTLRKIRGVK 247
NY T+ +HPYGWRI+LGGA +PA+ LL GS +I+ETP SLIER K E+G LRKIRGV
Sbjct: 186 NYFTATVHPYGWRIALGGAGIPAVILLFGSLLIIETPTSLIERNKNEEGKEALRKIRGVD 245
Query: 248 DVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVL 307
D+ EY I A +I++ +K PYR L+K +SRP I G + + QQ TGIN +MFYAPVL
Sbjct: 246 DINDEYESIVHACDIASQVKDPYRKLLKPASRPPFIIGMLLQLFQQFTGINAIMFYAPVL 305
Query: 308 FQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVIL 367
FQT+G+GS+A+LLSAVI+G+INV +T V I LVD+ GR+ LL+Q+++ M+ICQ IG+IL
Sbjct: 306 FQTVGFGSDAALLSAVITGSINVLATFVGIYLVDRTGRRFLLLQSSVHMLICQLIIGIIL 365
Query: 368 KMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVST 427
L T T+ A VVVI VCV+V GFAWSWGP+ WLI SE +PLETR+AG+ AVS
Sbjct: 366 AKDLGVTGTLGRPQALVVVIFVCVYVMGFAWSWGPLGWLIPSETFPLETRSAGFAVAVSC 425
Query: 428 NMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLISLIFSATMLPETKGIPIDEMVDRAWKK 487
NM FTFVIAQAFLSMLC MR GIFFFF+GW+++ +F+ +PETKGI ID+M + WK
Sbjct: 426 NMFFTFVIAQAFLSMLCGMRSGIFFFFSGWIIVMGLFAFFFIPETKGIAIDDMRESVWKP 485
Query: 488 HWYWKSYF--KNDNHDGSKRT 506
HW+WK Y ++D+HD KR
Sbjct: 486 HWFWKRYMLPEDDHHDIEKRN 506
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, 3-O-methylglucose, mannose, fructose and galactose, and, to a lower extent, xylose and ribulose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LNV3|STP2_ARATH Sugar transport protein 2 OS=Arabidopsis thaliana GN=STP2 PE=1 SV=3 | Back alignment and function description |
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Score = 593 bits (1528), Expect = e-168, Method: Compositional matrix adjust.
Identities = 303/488 (62%), Positives = 371/488 (76%), Gaps = 5/488 (1%)
Query: 13 KDFPAKLTGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDN 72
K FPAKLTGQV +C +IAA GGLMFGYDIGIS GVT+MD FL+ FFP VYEKKHR E+N
Sbjct: 13 KAFPAKLTGQVFLCCVIAAVGGLMFGYDIGISGGVTSMDTFLLDFFPHVYEKKHRVHENN 72
Query: 73 YCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNL 132
YCK+D+Q LQLFTSSLYLA I A F++S V R FGRKPTI AS+FFL+GAILN AQ L
Sbjct: 73 YCKFDDQLLQLFTSSLYLAGIFASFISSYVSRAFGRKPTIMLASIFFLVGAILNLSAQEL 132
Query: 133 GMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTS 192
GMLI GR+ LG G+GFGNQ VPLFISEIAP +YRGGLN+ FQ LIT+GILAA+ +NY TS
Sbjct: 133 GMLIGGRILLGFGIGFGNQTVPLFISEIAPARYRGGLNVMFQFLITIGILAASYVNYLTS 192
Query: 193 RIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKE 252
+ GWR SLGGAAVPAL LL+GS I ETPASLIERGK E+G LRKIRG++D+E E
Sbjct: 193 TLKN-GWRYSLGGAAVPALILLIGSFFIHETPASLIERGKDEKGKQVLRKIRGIEDIELE 251
Query: 253 YAEICRATEISNLIKHPYRSLMKKS-SRPQLICGTFIHMLQQLTGINVVMFYAPVLFQTM 311
+ EI ATE++ +K P++ L KS +RP L+CGT + QQ TGINVVMFYAPVLFQTM
Sbjct: 252 FNEIKYATEVATKVKSPFKELFTKSENRPPLVCGTLLQFFQQFTGINVVMFYAPVLFQTM 311
Query: 312 GYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVIL--KM 369
G G NASL+S V++ +N +T++++++VD AGR+ LL++ A+QM Q IG IL +
Sbjct: 312 GSGDNASLISTVVTNGVNAIATVISLLVVDFAGRRCLLMEGALQMTATQMTIGGILLAHL 371
Query: 370 FLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNM 429
L+ T VP +V+IL+CV+V+GFAWSWGP+ WL+ SEIYPLE RNAGYF AV+ NM
Sbjct: 372 KLVGPITGHAVPL-IVLILICVYVSGFAWSWGPLGWLVPSEIYPLEVRNAGYFCAVAMNM 430
Query: 430 VFTFVIAQAFLSMLCKMRWGIFFFFTGWLLISLIFSATMLPETKGIPIDEMVDRAWKKHW 489
V TF+I Q FLS LC+ R +FFFF +I +F LPETKG+PI+EM ++ WK H
Sbjct: 431 VCTFIIGQFFLSALCRFRSLLFFFFGIMNIIMGLFVVFFLPETKGVPIEEMAEKRWKTHP 490
Query: 490 YWKSYFKN 497
WK YFK+
Sbjct: 491 RWKKYFKD 498
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, 3-O-methylglucose, xylose, mannose, fructose and galactose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94AZ2|STP13_ARATH Sugar transport protein 13 OS=Arabidopsis thaliana GN=STP13 PE=1 SV=2 | Back alignment and function description |
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Score = 575 bits (1481), Expect = e-163, Method: Compositional matrix adjust.
Identities = 276/505 (54%), Positives = 372/505 (73%), Gaps = 5/505 (0%)
Query: 1 MPAIALSETGNGKDFPAKLTGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPL 60
M + + NG +F AK+T V++ I+AA GGLMFGYD+G+S GVT+M DFL KFFP+
Sbjct: 1 MTGGGFATSANGVEFEAKITPIVIISCIMAATGGLMFGYDVGVSGGVTSMPDFLEKFFPV 60
Query: 61 VYEK--KHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVF 118
VY K K+ NYCKYDNQ LQLFTSSLYLA + A F AS R GR+ T+ A VF
Sbjct: 61 VYRKVVAGADKDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRTLGRRLTMLIAGVF 120
Query: 119 FLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLIT 178
F+IG LN AQ+L MLIAGR+ LG GVGF NQAVPLF+SEIAP + RGGLNI FQL +T
Sbjct: 121 FIIGVALNAGAQDLAMLIAGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVT 180
Query: 179 VGILAANLINYGTSRIHP-YGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGL 237
+GIL ANL+NYGT++I +GWR+SLG A +PAL L +G+ ++ ETP SL+ERG+ ++G
Sbjct: 181 IGILFANLVNYGTAKIKGGWGWRLSLGLAGIPALLLTVGALLVTETPNSLVERGRLDEGK 240
Query: 238 YTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGI 297
LR+IRG +VE E+A++ A+ ++ +KHP+R+L+++ +RPQL+ + + QQ TGI
Sbjct: 241 AVLRRIRGTDNVEPEFADLLEASRLAKEVKHPFRNLLQRRNRPQLVIAVALQIFQQCTGI 300
Query: 298 NVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMI 357
N +MFYAPVLF T+G+GS+ASL SAV++G +NV STLV+I VDK GR++LL++A +QM
Sbjct: 301 NAIMFYAPVLFSTLGFGSDASLYSAVVTGAVNVLSTLVSIYSVDKVGRRVLLLEAGVQMF 360
Query: 358 ICQCAIGVILKMFLLTTNT-MPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLET 416
Q I +IL + + T+T + A +VV+++C +VA FAWSWGP+ WLI SE +PLET
Sbjct: 361 FSQVVIAIILGVKVTDTSTNLSKGFAILVVVMICTYVAAFAWSWGPLGWLIPSETFPLET 420
Query: 417 RNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLISLIFSATMLPETKGIP 476
R+AG V N++FTF+IAQAFLSMLC ++GIF FF+ W+LI +F +LPETK IP
Sbjct: 421 RSAGQSVTVCVNLLFTFIIAQAFLSMLCHFKFGIFIFFSAWVLIMSVFVMFLLPETKNIP 480
Query: 477 IDEMVDRAWKKHWYWKSYFKNDNHD 501
I+EM +R WKKHW+W + F +D++D
Sbjct: 481 IEEMTERVWKKHWFW-ARFMDDHND 504
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|O04249|STP7_ARATH Sugar transport protein 7 OS=Arabidopsis thaliana GN=STP7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 540 bits (1390), Expect = e-152, Method: Compositional matrix adjust.
Identities = 257/498 (51%), Positives = 349/498 (70%), Gaps = 3/498 (0%)
Query: 13 KDFPAKLTGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDN 72
+ + K+T V++ ++AA GG +FGYDIGIS GVT+MD+FL +FF VYEKK +A E N
Sbjct: 17 EQYQGKVTSYVIIACLVAAIGGSIFGYDIGISGGVTSMDEFLEEFFHTVYEKKKQAHESN 76
Query: 73 YCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNL 132
YCKYDNQ L FTSSLYLA +V+ +AS + R +GR+ +I + FLIG+ LN A NL
Sbjct: 77 YCKYDNQGLAAFTSSLYLAGLVSTLVASPITRNYGRRASIVCGGISFLIGSGLNAGAVNL 136
Query: 133 GMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTS 192
ML+AGR+ LG+G+GFGNQAVPL++SE+AP RGGLN+ FQL T+GI AN++NYGT
Sbjct: 137 AMLLAGRIMLGVGIGFGNQAVPLYLSEVAPTHLRGGLNMMFQLATTIGIFTANMVNYGTQ 196
Query: 193 RIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKE 252
++ P+GWR+SLG AA PAL + LG + ETP SL+ERG E+G L K+RG ++V E
Sbjct: 197 QLKPWGWRLSLGLAAFPALLMTLGGYFLPETPNSLVERGLTERGRRVLVKLRGTENVNAE 256
Query: 253 YAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQTMG 312
++ A+E++N IKHP+R++++K RPQL+ + M Q LTGIN ++FYAPVLFQTMG
Sbjct: 257 LQDMVDASELANSIKHPFRNILQKRHRPQLVMAICMPMFQILTGINSILFYAPVLFQTMG 316
Query: 313 YGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLL 372
+G NASL S+ ++G + V ST ++I LVD+ GR+ LL+ IQMIICQ + VIL +
Sbjct: 317 FGGNASLYSSALTGAVLVLSTFISIGLVDRLGRRALLITGGIQMIICQVIVAVILGVKFG 376
Query: 373 TTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFT 432
+ + +VVI +C+FV F WSWGP+ W I SEI+PLETR+AG V+ N++FT
Sbjct: 377 DNQELSKGYSVIVVIFICLFVVAFGWSWGPLGWTIPSEIFPLETRSAGQSITVAVNLLFT 436
Query: 433 FVIAQAFLSMLCKMRWGIFFFFTGWLLISLIFSATMLPETKGIPIDEMVDRAWKKHWYWK 492
F+IAQAFL +LC ++GIF FF GW+ + IF +LPETKG+PI+EM W KHW+WK
Sbjct: 437 FIIAQAFLGLLCAFKFGIFLFFAGWVTVMTIFVYFLLPETKGVPIEEMT-LLWSKHWFWK 495
Query: 493 SYFKNDNH--DGSKRTEV 508
+ + D SK V
Sbjct: 496 KVLPDATNLEDESKNVSV 513
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LT15|STP10_ARATH Sugar transport protein 10 OS=Arabidopsis thaliana GN=STP10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 530 bits (1366), Expect = e-150, Method: Compositional matrix adjust.
Identities = 257/493 (52%), Positives = 353/493 (71%), Gaps = 8/493 (1%)
Query: 19 LTGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDN-YCKYD 77
+T V++ I+AA GGL+FGYD+GIS GVT+M++FL KFFP V + +AK D YCK+D
Sbjct: 21 VTAFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLTKFFPQVESQMKKAKHDTAYCKFD 80
Query: 78 NQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIA 137
NQ LQLFTSSLYLAA+VA F+AS++ RK GRK ++ + FLIGA+ N A N+ MLI
Sbjct: 81 NQMLQLFTSSLYLAALVASFMASVITRKHGRKVSMFIGGLAFLIGALFNAFAVNVSMLII 140
Query: 138 GRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPY 197
GRL LG+GVGF NQ+ P+++SE+AP K RG LNI FQ+ IT+GIL ANLINYGTS++ +
Sbjct: 141 GRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGILVANLINYGTSKMAQH 200
Query: 198 GWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAEIC 257
GWR+SLG AAVPA+ +++GS I+ +TP S++ERGK E+ L+KIRG +V+ E+ ++
Sbjct: 201 GWRVSLGLAAVPAVVMVIGSFILPDTPNSMLERGKNEEAKQMLKKIRGADNVDHEFQDLI 260
Query: 258 RATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQTMGYGSNA 317
A E + +++P++++M+ RP LI + I QQ+TGINV+MFYAPVLF+T+G+G +A
Sbjct: 261 DAVEAAKKVENPWKNIMESKYRPALIFCSAIPFFQQITGINVIMFYAPVLFKTLGFGDDA 320
Query: 318 SLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTM 377
+L+SAVI+G +N+ ST V+I VD+ GR++L ++ IQM ICQ +G + T+ T
Sbjct: 321 ALMSAVITGVVNMLSTFVSIYAVDRYGRRLLFLEGGIQMFICQLLVGSFIGARFGTSGTG 380
Query: 378 PTVPAKVVVIL--VCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVI 435
PA IL +CV+VAGFAWSWGP+ WL+ SEI PLE R AG VS NM FTF+I
Sbjct: 381 TLTPATADWILAFICVYVAGFAWSWGPLGWLVPSEICPLEIRPAGQAINVSVNMFFTFLI 440
Query: 436 AQAFLSMLCKMRWGIFFFFTGWLLISLIFSATMLPETKGIPIDEMVDRAWKKHWYWKSYF 495
Q FL+MLC M++G+F+FF + I +F +LPETKG+PI+EM R WK+HW+WK Y
Sbjct: 441 GQFFLTMLCHMKFGLFYFFASMVAIMTVFIYFLLPETKGVPIEEM-GRVWKQHWFWKKYI 499
Query: 496 KND----NHDGSK 504
D HD +
Sbjct: 500 PEDAIIGGHDDNN 512
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SX48|STP9_ARATH Sugar transport protein 9 OS=Arabidopsis thaliana GN=STP9 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 523 bits (1348), Expect = e-148, Method: Compositional matrix adjust.
Identities = 255/494 (51%), Positives = 355/494 (71%), Gaps = 5/494 (1%)
Query: 23 VLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAK-EDNYCKYDNQYL 81
V++ I+AA GGL+FGYD+GIS GVT+M++FL KFFP V ++ H A+ E YCK+DNQ L
Sbjct: 25 VIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLSKFFPEVDKQMHEARRETAYCKFDNQLL 84
Query: 82 QLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLS 141
QLFTSSLYLAA+ + F+AS V RK+GRK ++ V FLIG++ N A N+ MLI GRL
Sbjct: 85 QLFTSSLYLAALASSFVASAVTRKYGRKISMFVGGVAFLIGSLFNAFATNVAMLIVGRLL 144
Query: 142 LGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRI 201
LG+GVGF NQ+ P+++SE+AP K RG LNI FQ+ IT+GIL ANLINYGTS++ GWR+
Sbjct: 145 LGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGILIANLINYGTSQMAKNGWRV 204
Query: 202 SLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRATE 261
SLG AAVPA+ +++GS ++ +TP S++ERGK EQ L+KIRG +V++E+ ++C A E
Sbjct: 205 SLGLAAVPAVIMVIGSFVLPDTPNSMLERGKYEQAREMLQKIRGADNVDEEFQDLCDACE 264
Query: 262 ISNLIKHPYRSLMKKSS-RPQLICGTFIHMLQQLTGINVVMFYAPVLFQTMGYGSNASLL 320
+ + +P++++ +++ RP L+ + I QQ+TGINV+MFYAPVLF+T+G+ +ASL+
Sbjct: 265 AAKKVDNPWKNIFQQAKYRPALVFCSAIPFFQQITGINVIMFYAPVLFKTLGFADDASLI 324
Query: 321 SAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTV 380
SAVI+G +NV STLV+I VD+ GR+IL ++ IQMI+ Q +G ++ M TT +
Sbjct: 325 SAVITGAVNVVSTLVSIYAVDRYGRRILFLEGGIQMIVSQIVVGTLIGMKFGTTGSGTLT 384
Query: 381 PAKVVVIL--VCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQA 438
PA IL +C++VAGFAWSWGP+ WL+ SEI PLE R AG VS NM FTF+I Q
Sbjct: 385 PATADWILAFICLYVAGFAWSWGPLGWLVPSEICPLEIRPAGQAINVSVNMFFTFLIGQF 444
Query: 439 FLSMLCKMRWGIFFFFTGWLLISLIFSATMLPETKGIPIDEMVDRAWKKHWYWKSYFKND 498
FL+MLC M++G+F+FF G + + +F +LPETKG+PI+EM R WK+H +WK Y +D
Sbjct: 445 FLTMLCHMKFGLFYFFGGMVAVMTVFIYFLLPETKGVPIEEM-GRVWKQHPFWKRYMPDD 503
Query: 499 NHDGSKRTEVAAEI 512
G E+
Sbjct: 504 AVIGGGEENYVKEV 517
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Mostly transports glucose, and barely galactose, xylose and mannose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMX3|STP11_ARATH Sugar transport protein 11 OS=Arabidopsis thaliana GN=STP11 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 522 bits (1344), Expect = e-147, Method: Compositional matrix adjust.
Identities = 267/497 (53%), Positives = 357/497 (71%), Gaps = 6/497 (1%)
Query: 6 LSETGNGKDFPAKLTGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEK- 64
+ E+G+G D+ ++T V++ I+AA GGL+FGYDIGIS GV +M+DFL KFFP V +
Sbjct: 7 IDESGHGGDYEGRVTAFVMITCIVAAMGGLLFGYDIGISGGVISMEDFLTKFFPDVLRQM 66
Query: 65 -KHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGA 123
R +E YCKYDN+ L LFTSSLYLAA+ A FLAS + R FGRK ++ S+ FL GA
Sbjct: 67 QNKRGRETEYCKYDNELLTLFTSSLYLAALFASFLASTITRLFGRKVSMVIGSLAFLSGA 126
Query: 124 ILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILA 183
+LN LA NL MLI GRL LG+GVGF NQ+VPL++SE+AP K RG LNI FQL IT+GILA
Sbjct: 127 LLNGLAINLEMLIIGRLFLGVGVGFANQSVPLYLSEMAPAKIRGALNIGFQLAITIGILA 186
Query: 184 ANLINYGTSRI-HPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTLRK 242
AN++NY T ++ + GWR+SLG A VPA+ +L+G + +TP S++ERG +E+ L+K
Sbjct: 187 ANIVNYVTPKLQNGIGWRLSLGLAGVPAVMMLVGCFFLPDTPNSILERGNKEKAKEMLQK 246
Query: 243 IRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMF 302
IRG +VE E+ E+C A E + +KHP+ ++M+ RPQL TFI QQLTGINV+MF
Sbjct: 247 IRGTMEVEHEFNELCNACEAAKKVKHPWTNIMQARYRPQLTFCTFIPFFQQLTGINVIMF 306
Query: 303 YAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCA 362
YAPVLF+T+G+G++ASL+SAVI+G +NV ST+V+I VDK GR+ L +Q QMI+ Q A
Sbjct: 307 YAPVLFKTIGFGNDASLISAVITGLVNVLSTIVSIYSVDKFGRRALFLQGGFQMIVTQIA 366
Query: 363 IGVIL--KMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAG 420
+G ++ K + V A +++ L+C++VAGFAWSWGP+ WL+ SEI PLE R+AG
Sbjct: 367 VGSMIGWKFGFNGEGNLSGVDADIILALICLYVAGFAWSWGPLGWLVPSEICPLEIRSAG 426
Query: 421 YFFAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLISLIFSATMLPETKGIPIDEM 480
VS NM FTF I Q FL+MLC M++G+F+FF G +LI IF +LPETKG+PI+EM
Sbjct: 427 QSLNVSVNMFFTFFIGQFFLTMLCHMKFGLFYFFAGMVLIMTIFIYFLLPETKGVPIEEM 486
Query: 481 VDRAWKKHWYWKSYFKN 497
+ WK+H YW Y N
Sbjct: 487 -GKVWKEHRYWGKYSNN 502
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, galactose, mannose, xylose and 3-O-methylglucose, but not fructose and ribose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q41144|STC_RICCO Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1 | Back alignment and function description |
|---|
Score = 510 bits (1313), Expect = e-143, Method: Compositional matrix adjust.
Identities = 259/507 (51%), Positives = 359/507 (70%), Gaps = 8/507 (1%)
Query: 1 MPAIA--LSETGNGKDFPAKLTGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFF 58
MPA+ GN K +P LT V V ++AA GGL+FGYDIGIS GVT+MD FL KFF
Sbjct: 1 MPAVGGIPPSGGNRKVYPGNLTLYVTVTCVVAAMGGLIFGYDIGISGGVTSMDSFLKKFF 60
Query: 59 PLVYEKKHRAKEDN-YCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASV 117
P VY KK + N YC+YD+Q L +FTSSLYLAA++A +AS + RKFGRK ++ V
Sbjct: 61 PSVYRKKKADESSNQYCQYDSQTLTMFTSSLYLAALIASLVASTITRKFGRKLSMLFGGV 120
Query: 118 FFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLI 177
F GAI+N A+ + MLI GR+ LG G+GF NQ+VPL++SE+AP KYRG LNI FQL I
Sbjct: 121 LFCAGAIINGAAKAVWMLILGRILLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSI 180
Query: 178 TVGILAANLINYGTSRIHP-YGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQG 236
T+GIL AN++NY ++I +GWR+SLGGA VPAL + +GS ++ +TP S+IERG+ E+
Sbjct: 181 TIGILVANVLNYFFAKIKGGWGWRLSLGGAMVPALIITVGSLVLPDTPNSMIERGQHEEA 240
Query: 237 LYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTG 296
L+++RGV+DV++E+ ++ A+E S ++HP+R+L+++ RP L I QQLTG
Sbjct: 241 RAHLKRVRGVEDVDEEFTDLVHASEDSKKVEHPWRNLLQRKYRPHLSMAIAIPFFQQLTG 300
Query: 297 INVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQM 356
INV+MFYAPVLF T+G+GS+A+L+SAVI+G +NV +T+V+I VDK GR+ L ++ +QM
Sbjct: 301 INVIMFYAPVLFDTIGFGSDAALMSAVITGLVNVFATMVSIYGVDKWGRRFLFLEGGVQM 360
Query: 357 IICQCAIGVILKMFLLTTNTMPTVP---AKVVVILVCVFVAGFAWSWGPICWLISSEIYP 413
+ICQ + + +P A VVV+ +C++V+GFAWSWGP+ WL+ SEI+P
Sbjct: 361 LICQAIVAACIGAKFGVDGAPGDLPQWYAVVVVLFICIYVSGFAWSWGPLGWLVPSEIFP 420
Query: 414 LETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLISLIFSATMLPETK 473
LE R+A VS NM FTFV+AQ FL MLC +++G+F FF+ ++LI IF LPETK
Sbjct: 421 LEIRSAAQSVNVSVNMFFTFVVAQVFLIMLCHLKFGLFIFFSFFVLIMSIFVYYFLPETK 480
Query: 474 GIPIDEMVDRAWKKHWYWKSYFKNDNH 500
GIPI+EM + WK+HWYW Y ++++
Sbjct: 481 GIPIEEM-GQVWKQHWYWSRYVVDEDY 506
|
Ricinus communis (taxid: 3988) |
| >sp|P23586|STP1_ARATH Sugar transport protein 1 OS=Arabidopsis thaliana GN=STP1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 503 bits (1296), Expect = e-141, Method: Compositional matrix adjust.
Identities = 254/522 (48%), Positives = 354/522 (67%), Gaps = 18/522 (3%)
Query: 1 MPAIALSETGNGKDFPAKLTGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPL 60
MPA K +P KLT VL ++AA GGL+FGYDIGIS GVT+M FL +FFP
Sbjct: 1 MPAGGFVVGDGQKAYPGKLTPFVLFTCVVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPS 60
Query: 61 VYEKKHR-AKEDNYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFF 119
VY K+ A + YC+YD+ L +FTSSLYLAA+++ +AS V RKFGR+ ++ + F
Sbjct: 61 VYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGRRLSMLFGGILF 120
Query: 120 LIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITV 179
GA++N A+++ MLI GR+ LG G+GF NQAVPL++SE+AP KYRG LNI FQL IT+
Sbjct: 121 CAGALINGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGALNIGFQLSITI 180
Query: 180 GILAANLINYGTSRIHP-YGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLY 238
GIL A ++NY ++I +GWR+SLGGA VPAL + +GS ++ +TP S+IERG+ E+
Sbjct: 181 GILVAEVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGSLVLPDTPNSMIERGQHEEAKT 240
Query: 239 TLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGIN 298
LR+IRGV DV +E+ ++ A++ S I+HP+R+L+++ RP L I QQLTGIN
Sbjct: 241 KLRRIRGVDDVSQEFDDLVAASKESQSIEHPWRNLLRRKYRPHLTMAVMIPFFQQLTGIN 300
Query: 299 VVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMII 358
V+MFYAPVLF T+G+ ++ASL+SAV++G++NVA+TLV+I VD+ GR+ L ++ QM+I
Sbjct: 301 VIMFYAPVLFNTIGFTTDASLMSAVVTGSVNVAATLVSIYGVDRWGRRFLFLEGGTQMLI 360
Query: 359 CQCAIGVILKMFLLTTNTMPTVP---AKVVVILVCVFVAGFAWSWGPICWLISSEIYPLE 415
CQ + + T +P A VVV +C++VAGFAWSWGP+ WL+ SEI+PLE
Sbjct: 361 CQAVVAACIGAKFGVDGTPGELPKWYAIVVVTFICIYVAGFAWSWGPLGWLVPSEIFPLE 420
Query: 416 TRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLISLIFSATMLPETKGI 475
R+A VS NM+FTF+IAQ FL+MLC +++G+F F ++++ IF LPETKGI
Sbjct: 421 IRSAAQSITVSVNMIFTFIIAQIFLTMLCHLKFGLFLVFAFFVVVMSIFVYIFLPETKGI 480
Query: 476 PIDEMVDRAWKKHWYWKSYF------------KNDNHDGSKR 505
PI+EM + W+ HWYW + KN N G+K
Sbjct: 481 PIEEM-GQVWRSHWYWSRFVEDGEYGNALEMGKNSNQAGTKH 521
|
Major hexose transporter. Mediates an active uptake of hexoses, by sugar/hydrogen symport. Can transport glucose, 3-O-methylglucose, fructose, xylose, mannose, galactose, fucose, 2-deoxyglucose and arabinose. Confers sensitivity to galactose in seedlings. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 518 | ||||||
| 224054564 | 499 | predicted protein [Populus trichocarpa] | 0.963 | 1.0 | 0.688 | 0.0 | |
| 255569261 | 512 | sugar transporter, putative [Ricinus com | 0.969 | 0.980 | 0.673 | 0.0 | |
| 255569259 | 509 | sugar transporter, putative [Ricinus com | 0.965 | 0.982 | 0.671 | 0.0 | |
| 224104311 | 518 | predicted protein [Populus trichocarpa] | 0.986 | 0.986 | 0.649 | 0.0 | |
| 57283534 | 517 | monosaccharide transporter [Populus trem | 0.984 | 0.986 | 0.647 | 0.0 | |
| 15240279 | 507 | sugar transport protein 8 [Arabidopsis t | 0.974 | 0.996 | 0.620 | 0.0 | |
| 297808651 | 507 | hypothetical protein ARALYDRAFT_351641 [ | 0.974 | 0.996 | 0.616 | 1e-179 | |
| 255552339 | 515 | sugar transporter, putative [Ricinus com | 0.976 | 0.982 | 0.582 | 1e-178 | |
| 147822727 | 506 | hypothetical protein VITISV_025411 [Viti | 0.965 | 0.988 | 0.626 | 1e-178 | |
| 225432608 | 513 | PREDICTED: sugar transport protein 8-lik | 0.965 | 0.974 | 0.626 | 1e-178 |
| >gi|224054564|ref|XP_002298323.1| predicted protein [Populus trichocarpa] gi|222845581|gb|EEE83128.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/501 (68%), Positives = 415/501 (82%), Gaps = 2/501 (0%)
Query: 6 LSETGNGKDFPAKLTGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKK 65
++E+G G+D P+KLT QV +C IIAA GGLMFGYDIGIS GVT+MDDFL KFFP VY KK
Sbjct: 1 MAESGGGRDLPSKLTWQVFICCIIAASGGLMFGYDIGISGGVTSMDDFLEKFFPSVYLKK 60
Query: 66 HRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAIL 125
H A+EDNYCKYDNQ+LQLFTSSLYLAAIV+ F+AS C+KFGRKPTIQAAS+FFL GA+L
Sbjct: 61 HEAREDNYCKYDNQFLQLFTSSLYLAAIVSSFIASFFCKKFGRKPTIQAASIFFLAGAVL 120
Query: 126 NCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAAN 185
N +A LGMLIAGR+ LG+GVGFGNQAVPLFISEIAP KYRGGLNICFQLLIT+GIL AN
Sbjct: 121 NAVAVELGMLIAGRICLGVGVGFGNQAVPLFISEIAPAKYRGGLNICFQLLITIGILMAN 180
Query: 186 LINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTLRKIRG 245
LINY TS++HPYGWRISLG AAVPA+ L +GS +I+ETP SL+ERGK E+ L LRKIRG
Sbjct: 181 LINYATSKVHPYGWRISLGCAAVPAIILAIGSLVIMETPTSLLERGKNEEALRVLRKIRG 240
Query: 246 VKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAP 305
V +V+KEYAEI A E++ +KHP+R+LM +S+RPQLICGT + QQ TGINVVMFYAP
Sbjct: 241 VDNVDKEYAEILNAIELAKQVKHPFRNLMSRSNRPQLICGTVLQFFQQFTGINVVMFYAP 300
Query: 306 VLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGV 365
VLFQTMGYGS+ SLLSAV++ +NV STLVA+ LVD GR++LL++A +QM+ Q +G
Sbjct: 301 VLFQTMGYGSDGSLLSAVVTDLVNVLSTLVAVFLVDIIGRRVLLIEACLQMLAAQSIMGR 360
Query: 366 ILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAV 425
IL + L + N MP AK+VVILVCVFV+GFAWSWGP+ WLI SEI+PLETR+AG+FFAV
Sbjct: 361 ILAVHLKSANIMPKGSAKLVVILVCVFVSGFAWSWGPLGWLIPSEIFPLETRSAGFFFAV 420
Query: 426 STNMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLISLIFSATMLPETKGIPIDEMVDRAW 485
NM TF++AQAFL+MLC MR GIFFFF W+++ IF+ LPETKGIPIDEM +R W
Sbjct: 421 GMNMFCTFLVAQAFLTMLCHMRSGIFFFFAAWIVVMGIFAIFFLPETKGIPIDEMNERVW 480
Query: 486 KKHWYWKSYFKNDNHDGSKRT 506
KKHW+WK Y+ ++ D +KR+
Sbjct: 481 KKHWFWKRYY--EDSDINKRS 499
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255569261|ref|XP_002525598.1| sugar transporter, putative [Ricinus communis] gi|223535034|gb|EEF36716.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/506 (67%), Positives = 401/506 (79%), Gaps = 4/506 (0%)
Query: 1 MPAIALSETGN-GKDFPAKLTGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFP 59
MP +A+ E G +DFPAKLT QV+VCSIIAA GGLMFGYDIGIS GVT+MD FL +FFP
Sbjct: 1 MPGVAMVEAGGCPQDFPAKLTRQVVVCSIIAAVGGLMFGYDIGISGGVTSMDSFLKEFFP 60
Query: 60 LVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFF 119
VY KKH+AK DNYCKY+NQ+LQLFTSSLY AAIVA +SIV +KFGRKP +Q ASV F
Sbjct: 61 TVYVKKHQAKTDNYCKYNNQWLQLFTSSLYFAAIVASGFSSIVNKKFGRKPAMQIASVLF 120
Query: 120 LIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITV 179
LIGAILN AQNL MLI GR+ LG GVGFGNQAVPLFISEIAP KYRGGLNICFQLL T+
Sbjct: 121 LIGAILNASAQNLAMLIIGRMFLGAGVGFGNQAVPLFISEIAPVKYRGGLNICFQLLCTL 180
Query: 180 GILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYT 239
GILAAN+INY TS+ HPYGWRISLGGAAVPAL LL GS IIVETP SLIERGK E+GL T
Sbjct: 181 GILAANIINYFTSK-HPYGWRISLGGAAVPALVLLFGSMIIVETPTSLIERGKHEKGLST 239
Query: 240 LRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINV 299
L+KIRGV +V+KEY EI + + + IKHPYR+LM K +RPQLICG+ + QQ+TGI
Sbjct: 240 LKKIRGVDNVDKEYQEIFSSADYAKQIKHPYRNLMSKYNRPQLICGSLLQFFQQVTGITA 299
Query: 300 VMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIIC 359
VMFYAPVLF TMG+G NASL SAV++ T+ T+VAI LVD+ GRK+LL QAAIQM I
Sbjct: 300 VMFYAPVLFMTMGFGDNASLFSAVMANTVKPVCTIVAIFLVDRFGRKVLLAQAAIQMFIA 359
Query: 360 QCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNA 419
QCAIG IL L +TN +P +V++L+C+F+ GFAWSWGP+CWLI SE +PLETR+
Sbjct: 360 QCAIGGILARHLHSTNVVPKHYCVIVILLICLFLTGFAWSWGPLCWLIPSETFPLETRST 419
Query: 420 GYFFAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLISLIFSATMLPETKGIPIDE 479
F VS NM TF+IAQ FL+ LC +R+G+FFFF WL+I IF+ LPETKG+PIDE
Sbjct: 420 ALFVTVSINMFSTFLIAQTFLTTLCHLRYGVFFFFAVWLVIMFIFTICFLPETKGVPIDE 479
Query: 480 MVDRAWKKHWYWKSYFKNDNHDGSKR 505
M+D WKKHW+WK ++K ++D SKR
Sbjct: 480 MIDMVWKKHWFWKRFYK--DYDVSKR 503
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255569259|ref|XP_002525597.1| sugar transporter, putative [Ricinus communis] gi|223535033|gb|EEF36715.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/505 (67%), Positives = 411/505 (81%), Gaps = 5/505 (0%)
Query: 12 GKDFPAKLTGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKED 71
GKDFPAKLT QVL+CSIIAAFGGLMFGYDIGIS GVT+MDDFL KFFP VY KKHRA+ED
Sbjct: 10 GKDFPAKLTFQVLICSIIAAFGGLMFGYDIGISGGVTSMDDFLEKFFPTVYVKKHRARED 69
Query: 72 NYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQN 131
NYCK+DNQ LQLFTSSLYLAAIVA F+AS++C+K+GRKPTIQAASVFFLIGA+LN +A++
Sbjct: 70 NYCKFDNQLLQLFTSSLYLAAIVASFVASVMCKKWGRKPTIQAASVFFLIGAVLNYVAKD 129
Query: 132 LGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGT 191
LGMLIAGR+ LG GVGFGNQAVPLFISEIAP K+RGGLNICFQLLIT+GIL AN++NY T
Sbjct: 130 LGMLIAGRIFLGAGVGFGNQAVPLFISEIAPAKHRGGLNICFQLLITIGILTANIVNYFT 189
Query: 192 SRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTLRKIRGVKDVEK 251
S+IHP+GWR SLGGAA PA+ LL+GS I ETP SLIERGK EQG L+KIRGV DVE+
Sbjct: 190 SKIHPHGWRYSLGGAAGPAIILLIGSLAISETPTSLIERGKHEQGKKVLKKIRGVDDVEE 249
Query: 252 EYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQTM 311
E++EI A ++ +K+P+ LM + RPQL CGT + + QQ TGINVVMFYAPVLFQTM
Sbjct: 250 EFSEILNAINLAKQVKNPWGKLMSTTYRPQLFCGTILQIFQQFTGINVVMFYAPVLFQTM 309
Query: 312 GYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFL 371
G G +ASLLSAV++ +INV +TL+AI VDK GR+ LL+QAA+QM I Q +G IL L
Sbjct: 310 GLGGDASLLSAVVTDSINVVATLIAIACVDKVGRRSLLIQAAVQMFIAQTVMGAILATQL 369
Query: 372 LTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVF 431
+TN +P A V++L+CVFV+GFAWSWGP+ WLI+SEI+PLETR++G+FFAVS NM
Sbjct: 370 KSTNMIPRSYALAVLVLICVFVSGFAWSWGPLGWLIASEIFPLETRSSGFFFAVSMNMFC 429
Query: 432 TFVIAQAFLSMLCKMRWGIFFFFTGWLLISLIFSATMLPETKGIPIDEMVDRAWKKHWYW 491
TF+IAQAFL+MLC +R+ FFFF +L + +F+ +LPETKG+PIDEM +R W KHW+W
Sbjct: 430 TFIIAQAFLTMLCHLRYMTFFFFAVFLFVMGLFAYCILPETKGVPIDEMNERVWSKHWFW 489
Query: 492 KSYFKNDNHDGSKRTEVAAEIEEKP 516
K Y+++ N A EIE+ P
Sbjct: 490 KRYYRDCNTGKG-----AQEIEDNP 509
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224104311|ref|XP_002313392.1| predicted protein [Populus trichocarpa] gi|222849800|gb|EEE87347.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/517 (64%), Positives = 411/517 (79%), Gaps = 6/517 (1%)
Query: 1 MPAIALSE-TGNGKDFPAKLTGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFP 59
MP + L + +G +D PAKLT QV+VC++I+A GGLMFGYDIGIS GVT MD FL KFFP
Sbjct: 1 MPELTLVDGSGVRRDLPAKLTWQVIVCTVISACGGLMFGYDIGISGGVTGMDMFLEKFFP 60
Query: 60 LVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFF 119
VY KKH+AK +NYCK+++Q LQLFTSSLYLAAIVACF+ SI C+K GRKPT+Q ASVFF
Sbjct: 61 EVYVKKHQAKANNYCKFNSQLLQLFTSSLYLAAIVACFIGSICCKKRGRKPTMQIASVFF 120
Query: 120 LIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITV 179
L+GAILN A N+GMLIAGRL LG G+GFGNQAVPLFISEIAP +YRGGLN+CFQLLIT+
Sbjct: 121 LVGAILNAAALNIGMLIAGRLCLGAGIGFGNQAVPLFISEIAPARYRGGLNLCFQLLITI 180
Query: 180 GILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYT 239
GIL AN+INY TS++HPYGWRISLGGAA PAL LLLGS +IVETP SLIERGK E+GLYT
Sbjct: 181 GILTANVINYATSKLHPYGWRISLGGAACPALLLLLGSLMIVETPTSLIERGKNEEGLYT 240
Query: 240 LRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINV 299
L+KIRGV +V+KEY EI +A E S I+HP+++L K+S RPQL+CG I + QQ TGI+V
Sbjct: 241 LKKIRGVDNVDKEYEEISQAVEFSRQIRHPFKNLWKQSGRPQLVCGALIQIFQQFTGISV 300
Query: 300 VMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIIC 359
VM YAPVLFQTMG G NASL+SA+++ T+ T AIV+VD+ GR+ LL++AAIQM I
Sbjct: 301 VMLYAPVLFQTMGLGENASLMSAIMTNTVKPIGTAFAIVVVDRFGRRALLIEAAIQMFIS 360
Query: 360 QCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNA 419
AIGVIL + L +TN + A +V++LVCVF+AGFAWSWGP+ WLI SEI+P+ETR+A
Sbjct: 361 LGAIGVILAVHLHSTNVVAKHYAVLVIVLVCVFLAGFAWSWGPLGWLIPSEIFPIETRSA 420
Query: 420 GYFFAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLISLIFSATMLPETKGIPIDE 479
G+ AV N VFTF++AQ FL+MLC MR G FF + L + +F+ LPETKGIPIDE
Sbjct: 421 GFSVAVIMNFVFTFLVAQTFLTMLCHMRAGTFFLYCAMLAVMCLFAKYFLPETKGIPIDE 480
Query: 480 MVDRAWKKHWYWKSYFKNDNHDGSKRTEVAAEIEEKP 516
MV+R WK+HW+WK Y+K +HD K EI++KP
Sbjct: 481 MVERVWKQHWFWKRYYK--DHDTGKG---GLEIQDKP 512
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|57283534|emb|CAG27607.1| monosaccharide transporter [Populus tremula x Populus tremuloides] | Back alignment and taxonomy information |
|---|
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/517 (64%), Positives = 410/517 (79%), Gaps = 7/517 (1%)
Query: 1 MPAIALSE-TGNGKDFPAKLTGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFP 59
MP + L + +G +D PAKLT QV+VC++I+A GGLMFGYDIGIS GVT MD FL KFFP
Sbjct: 1 MPELTLVDGSGVRRDLPAKLTWQVIVCTVISACGGLMFGYDIGISGGVTGMDMFLEKFFP 60
Query: 60 LVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFF 119
VY KKH+AK +NYCK+++Q LQLFTSSLYLAAIVACF+ SI C+K GRKPT+Q ASVFF
Sbjct: 61 EVYVKKHQAKANNYCKFNSQLLQLFTSSLYLAAIVACFIGSICCKKRGRKPTMQIASVFF 120
Query: 120 LIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITV 179
L+GAILN A N+GMLIAGRL LG G+GFGNQAVPLFISEIAP +YRGGLN+CFQLLIT+
Sbjct: 121 LVGAILNAAALNIGMLIAGRLCLGAGIGFGNQAVPLFISEIAPARYRGGLNLCFQLLITI 180
Query: 180 GILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYT 239
GIL AN+INY TS++HPYGWRISLGGAA PAL LLLGS +IVETP SLIERGK E+GLYT
Sbjct: 181 GILTANVINYATSKLHPYGWRISLGGAACPALLLLLGSLMIVETPTSLIERGKNEEGLYT 240
Query: 240 LRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINV 299
L+KIRGV +V+KEY EI +A E S I+HP+++L K+S RPQL+CG I + QQ TGI+V
Sbjct: 241 LKKIRGVDNVDKEYEEISQAVEFSRQIRHPFKNLWKQSGRPQLVCGALIQIFQQFTGISV 300
Query: 300 VMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIIC 359
VM YAPVL QTMG G NASL+SA+++ T+ T AIV+VD+ GR+ LL++AAIQM I
Sbjct: 301 VMLYAPVLVQTMGLGENASLMSAIMTNTVKPIGTAFAIVVVDRFGRRALLIEAAIQMFI- 359
Query: 360 QCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNA 419
AIGVIL + L +TN + A +V++LVCVF+AGFAWSWGP+ WLI SEI+P+ETR+A
Sbjct: 360 SFAIGVILAVHLHSTNVVAKHYAVLVIVLVCVFLAGFAWSWGPLGWLIPSEIFPIETRSA 419
Query: 420 GYFFAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLISLIFSATMLPETKGIPIDE 479
G+ AV N VFTF++AQ FL+MLC MR G FF + L + +F+ LPETKGIPIDE
Sbjct: 420 GFSVAVIMNFVFTFLVAQTFLTMLCHMRAGTFFLYCAMLAVMCLFAKYFLPETKGIPIDE 479
Query: 480 MVDRAWKKHWYWKSYFKNDNHDGSKRTEVAAEIEEKP 516
MV+R WK+HW+WK Y+K +HD K EI++KP
Sbjct: 480 MVERVWKQHWFWKRYYK--DHDTGKG---GLEIQDKP 511
|
Source: Populus tremula x Populus tremuloides Species: Populus tremula x Populus tremuloides Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15240279|ref|NP_197997.1| sugar transport protein 8 [Arabidopsis thaliana] gi|85701285|sp|Q9SBA7.2|STP8_ARATH RecName: Full=Sugar transport protein 8; AltName: Full=Hexose transporter 8 gi|3319343|gb|AAC26232.1| contains similarity to sugar transporters (Pfam: sugar_tr.hmm, score: 395.91) [Arabidopsis thaliana] gi|15487246|emb|CAC69068.1| STP8 protein [Arabidopsis thaliana] gi|332006158|gb|AED93541.1| sugar transport protein 8 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/506 (62%), Positives = 384/506 (75%), Gaps = 1/506 (0%)
Query: 3 AIALSETGNGKDFPAKLTGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVY 62
A+ +S GN K F AK+T V +C IIAA GGL+FGYDIGIS GVT MDDFL +FFP VY
Sbjct: 2 AVVISSNGNSKSFDAKMTVYVFICVIIAAVGGLIFGYDIGISGGVTAMDDFLKEFFPSVY 61
Query: 63 EKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIG 122
E+K A E+NYCKYDNQ+LQLFTSSLYLAA+VA F AS C K GR+PT+Q AS+FFLIG
Sbjct: 62 ERKKHAHENNYCKYDNQFLQLFTSSLYLAALVASFFASATCSKLGRRPTMQLASIFFLIG 121
Query: 123 AILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGIL 182
L A N+ MLI GR+ LG GVGFGNQAVPLF+SEIAP + RGGLNI FQL++T+GIL
Sbjct: 122 VGLAAGAVNIYMLIIGRILLGFGVGFGNQAVPLFLSEIAPARLRGGLNIVFQLMVTIGIL 181
Query: 183 AANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTLRK 242
AN++NY TS IHPYGWRI+LGGA +PAL LL GS +I ETP SLIER K ++G TL+K
Sbjct: 182 IANIVNYFTSSIHPYGWRIALGGAGIPALILLFGSLLICETPTSLIERNKTKEGKETLKK 241
Query: 243 IRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMF 302
IRGV+DV++EY I A +I+ +K PY LMK +SRP + G + QQ TGIN +MF
Sbjct: 242 IRGVEDVDEEYESIVHACDIARQVKDPYTKLMKPASRPPFVIGMLLQFFQQFTGINAIMF 301
Query: 303 YAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCA 362
YAPVLFQT+G+G++A+LLSAV++GTINV ST V I LVDK GR+ LL+Q+++ M+ICQ
Sbjct: 302 YAPVLFQTVGFGNDAALLSAVVTGTINVLSTFVGIFLVDKTGRRFLLLQSSVHMLICQLV 361
Query: 363 IGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYF 422
IG+IL L T T+ A VVVI VCV+V GFAWSWGP+ WLI SE +PLETR G+
Sbjct: 362 IGIILAKDLDVTGTLARPQALVVVIFVCVYVMGFAWSWGPLGWLIPSETFPLETRTEGFA 421
Query: 423 FAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLISLIFSATMLPETKGIPIDEMVD 482
AVS NM FTFVIAQAFLSMLC M+ GIFFFF+GW+++ +F+ +PETKG+ ID+M D
Sbjct: 422 LAVSCNMFFTFVIAQAFLSMLCAMKSGIFFFFSGWIVVMGLFALFFVPETKGVSIDDMRD 481
Query: 483 RAWKKHWYWKSY-FKNDNHDGSKRTE 507
WK HWYWK + + D HD KRT+
Sbjct: 482 SVWKLHWYWKRFMLEEDEHDVEKRTD 507
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297808651|ref|XP_002872209.1| hypothetical protein ARALYDRAFT_351641 [Arabidopsis lyrata subsp. lyrata] gi|297318046|gb|EFH48468.1| hypothetical protein ARALYDRAFT_351641 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 636 bits (1640), Expect = e-179, Method: Compositional matrix adjust.
Identities = 312/506 (61%), Positives = 384/506 (75%), Gaps = 1/506 (0%)
Query: 3 AIALSETGNGKDFPAKLTGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVY 62
A+ +S GN K F AK+T V +C IIAA GGL+FGYDIGIS GVT MDDFL +FFP VY
Sbjct: 2 AVVISSNGNSKAFDAKMTVYVFICVIIAAVGGLIFGYDIGISGGVTAMDDFLKEFFPSVY 61
Query: 63 EKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIG 122
E+K A E+NYCKYDNQ+LQLFTSSLYLAA+VA F AS C K GR+PT+Q AS+FFLIG
Sbjct: 62 ERKKHAHENNYCKYDNQFLQLFTSSLYLAALVASFFASATCSKLGRRPTMQLASIFFLIG 121
Query: 123 AILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGIL 182
L A N+ MLI GR+ LG GVGFGNQAVPLF+SEIAP + RGGLNI FQL++T+GIL
Sbjct: 122 VGLAAGAVNIYMLIFGRILLGFGVGFGNQAVPLFLSEIAPARLRGGLNIVFQLMVTIGIL 181
Query: 183 AANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTLRK 242
AN++NY TS IHPYGWR++LGGA +PAL LL GS +I ETP SLIER K ++G TL+K
Sbjct: 182 IANIVNYFTSSIHPYGWRLALGGAGIPALILLFGSLLICETPTSLIERNKTKEGKETLKK 241
Query: 243 IRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMF 302
IRGV+DV++EY I A + + +K PY LMK +SRP + G + QQLTGIN +MF
Sbjct: 242 IRGVEDVDEEYESIVHACDFARQVKDPYTKLMKPASRPPFVIGMLLQFFQQLTGINAIMF 301
Query: 303 YAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCA 362
YAPVLFQT+G+G++A+LLSAVI+GTINV ST V I LVDK GR+ LL+Q+++ M++CQ
Sbjct: 302 YAPVLFQTVGFGNDAALLSAVITGTINVLSTFVGIFLVDKTGRRFLLLQSSVHMLVCQLV 361
Query: 363 IGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYF 422
IG+IL L T T+ A VVVI VCV+V GFAWSWGP+ WLI SE +P+ETR G+
Sbjct: 362 IGIILAKDLDVTGTLGRPQALVVVIFVCVYVMGFAWSWGPLGWLIPSETFPVETRTEGFA 421
Query: 423 FAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLISLIFSATMLPETKGIPIDEMVD 482
AVS NM FTFVIAQAFLSMLC M+ GIFFFF+GW+++ +F+ +PETKG+ ID+M D
Sbjct: 422 LAVSCNMFFTFVIAQAFLSMLCGMKSGIFFFFSGWIVVMGLFALFFVPETKGVAIDDMRD 481
Query: 483 RAWKKHWYWKSY-FKNDNHDGSKRTE 507
WK HWYWK + + D HD KRT+
Sbjct: 482 SVWKLHWYWKRFMLEEDEHDVEKRTD 507
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255552339|ref|XP_002517214.1| sugar transporter, putative [Ricinus communis] gi|223543849|gb|EEF45377.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 631 bits (1627), Expect = e-178, Method: Compositional matrix adjust.
Identities = 301/517 (58%), Positives = 398/517 (76%), Gaps = 11/517 (2%)
Query: 1 MPAIALS-ETGNGKDFPAKLTGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFP 59
MPAI ++ + G+ ++ K+T V++C IIAA GGLMFGYDIG+S GVT MDDFL KFFP
Sbjct: 1 MPAIIIANKNGDYPEYDGKITVTVIICVIIAACGGLMFGYDIGVSGGVTAMDDFLEKFFP 60
Query: 60 LVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFF 119
VYE+K A E+NYCKYDNQYLQLFTSSLY+AA++A F AS C KFGRKPT+Q AS+FF
Sbjct: 61 SVYERKKHALENNYCKYDNQYLQLFTSSLYIAALIASFFASKTCTKFGRKPTMQLASIFF 120
Query: 120 LIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITV 179
++G +L+ L N+ M+I GR+ LG GVGF NQAVPLF+SE+AP K RG LNI FQL +T+
Sbjct: 121 IVGVVLSALGVNIEMVIVGRVLLGFGVGFANQAVPLFLSELAPVKMRGALNISFQLFVTI 180
Query: 180 GILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYT 239
GIL ANL+NY T +IHP+G++ISLG A VPAL L LGS +IVETP SL+ER + E+G
Sbjct: 181 GILIANLVNYYTGKIHPHGYKISLGLAGVPALMLGLGSLLIVETPTSLVERNRIEEGRAV 240
Query: 240 LRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINV 299
L+KIRGV +V+ E+ I A E++ + PYR LMK+ SRP L+ + + QQ TGIN
Sbjct: 241 LKKIRGVDNVDLEFDSIVHACEMARQVTDPYRKLMKRPSRPPLVIAILLQIFQQFTGINA 300
Query: 300 VMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIIC 359
+MFYAPVLFQT+G+G++ASLLS+V++G +NV ST+V+IV+VD+AGR+ILL+++ +QM+I
Sbjct: 301 IMFYAPVLFQTVGFGNDASLLSSVVTGLVNVLSTVVSIVVVDRAGRRILLLESCVQMLIT 360
Query: 360 QCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNA 419
Q IG +L L T +P+ A VVV++VC++VAGFAWSWGP+ WLI SE +PLETR A
Sbjct: 361 QTIIGALLLKDLKPTGELPSSEAMVVVVMVCIYVAGFAWSWGPLGWLIPSETFPLETRTA 420
Query: 420 GYFFAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLISLIFSATMLPETKGIPIDE 479
GY FAVS+NM+ TF+IAQAFLSMLC M+ GIFFFF W+++ ++F+ +PETKG+P+D
Sbjct: 421 GYSFAVSSNMLCTFIIAQAFLSMLCSMQAGIFFFFAAWIVVMMLFAYFFIPETKGVPVDV 480
Query: 480 MVDRAWKKHWYWKSYFKNDNHDGSKRTEVAAEIEEKP 516
MV+R WK+HW+WK +F DG ++ E+E+KP
Sbjct: 481 MVERVWKQHWFWKRFF-----DGEEK-----EVEQKP 507
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147822727|emb|CAN61764.1| hypothetical protein VITISV_025411 [Vitis vinifera] gi|310877806|gb|ADP37134.1| putative hexose transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 631 bits (1627), Expect = e-178, Method: Compositional matrix adjust.
Identities = 313/500 (62%), Positives = 393/500 (78%)
Query: 7 SETGNGKDFPAKLTGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKH 66
+ GN F +++T V++C I+AAFGGLMFGYDIGIS GVT MD FLIKFFP+VY++K
Sbjct: 3 TTEGNSMKFESRITFYVVLCWILAAFGGLMFGYDIGISGGVTGMDGFLIKFFPIVYKRKL 62
Query: 67 RAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILN 126
RAKEDNYCKYD+QYLQLFTSSLYLAA+++ F AS VC KFGRKPTI ASVFFL+G+ L+
Sbjct: 63 RAKEDNYCKYDDQYLQLFTSSLYLAALISSFPASKVCTKFGRKPTILVASVFFLLGSGLS 122
Query: 127 CLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANL 186
A + MLI GR+SLG GVGFGN+AVPLF+SEIAP +YRG +NI FQL IT+GIL ANL
Sbjct: 123 AGAHQMWMLILGRISLGCGVGFGNEAVPLFLSEIAPVEYRGAVNILFQLFITIGILIANL 182
Query: 187 INYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTLRKIRGV 246
+NYGTS++HP+GWR+SLG AA+PA L +GS II ETP SL+ER +E+G TL+KIRGV
Sbjct: 183 VNYGTSKVHPWGWRLSLGLAAIPATGLFIGSLIIPETPTSLVERNHEEKGRKTLKKIRGV 242
Query: 247 KDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPV 306
+V+ E+ +I A EI+ +KHPYRSLMK SS P LI G + + QQ TGIN +MFYAP+
Sbjct: 243 DNVDPEFEQIKVACEIARRVKHPYRSLMKLSSMPPLIIGIMMQVFQQFTGINAIMFYAPI 302
Query: 307 LFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVI 366
LFQT+G+ ++ASLLSA+I+G +NV T+V+I VDK GR++LL+QA +QM + Q AIG I
Sbjct: 303 LFQTVGFKNDASLLSAIITGLVNVFCTVVSIYAVDKVGRRLLLLQACVQMFVSQTAIGGI 362
Query: 367 LKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVS 426
L L TN++P A VVV+LVCV+V+ FAWSWGP+ WLI SE +PLETR AG+ FAVS
Sbjct: 363 LLAKLNATNSLPKGQAWVVVVLVCVYVSSFAWSWGPLGWLIPSETFPLETRTAGFAFAVS 422
Query: 427 TNMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLISLIFSATMLPETKGIPIDEMVDRAWK 486
+NM+FTFVIAQ+FLSM+C MR GIF FF GW++I IF +LPETKG+PIDEM +R WK
Sbjct: 423 SNMLFTFVIAQSFLSMMCHMRAGIFLFFAGWIVIMGIFVLFLLPETKGVPIDEMKERVWK 482
Query: 487 KHWYWKSYFKNDNHDGSKRT 506
KH WK + +D D +K+T
Sbjct: 483 KHPIWKKFMSDDADDRAKKT 502
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225432608|ref|XP_002277946.1| PREDICTED: sugar transport protein 8-like, partial [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 630 bits (1624), Expect = e-178, Method: Compositional matrix adjust.
Identities = 313/500 (62%), Positives = 393/500 (78%)
Query: 7 SETGNGKDFPAKLTGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKH 66
+ GN F +++T V++C I+AAFGGLMFGYDIGIS GVT MD FLIKFFP+VY++K
Sbjct: 10 TTEGNSMKFESRITFYVVLCWILAAFGGLMFGYDIGISGGVTGMDGFLIKFFPIVYKRKL 69
Query: 67 RAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILN 126
RAKEDNYCKYD+QYLQLFTSSLYLAA+++ F AS VC KFGRKPTI ASVFFL+G+ L+
Sbjct: 70 RAKEDNYCKYDDQYLQLFTSSLYLAALISSFPASKVCTKFGRKPTILVASVFFLLGSGLS 129
Query: 127 CLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANL 186
A + MLI GR+SLG GVGFGN+AVPLF+SEIAP +YRG +NI FQL IT+GIL ANL
Sbjct: 130 AGAHQMWMLILGRISLGCGVGFGNEAVPLFLSEIAPVEYRGAVNILFQLFITIGILIANL 189
Query: 187 INYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTLRKIRGV 246
+NYGTS++HP+GWR+SLG AA+PA L +GS II ETP SL+ER +E+G TL+KIRGV
Sbjct: 190 VNYGTSKVHPWGWRLSLGLAAIPATGLFIGSLIIPETPTSLVERNHEEKGRKTLKKIRGV 249
Query: 247 KDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPV 306
+V+ E+ +I A EI+ +KHPYRSLMK SS P LI G + + QQ TGIN +MFYAP+
Sbjct: 250 DNVDPEFEQIKVACEIARRVKHPYRSLMKLSSMPPLIIGIMMQVFQQFTGINAIMFYAPI 309
Query: 307 LFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVI 366
LFQT+G+ ++ASLLSA+I+G +NV T+V+I VDK GR++LL+QA +QM + Q AIG I
Sbjct: 310 LFQTVGFKNDASLLSAIITGLVNVFCTVVSIYAVDKVGRRLLLLQACVQMFVSQTAIGGI 369
Query: 367 LKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVS 426
L L TN++P A VVV+LVCV+V+ FAWSWGP+ WLI SE +PLETR AG+ FAVS
Sbjct: 370 LLAKLNATNSLPKGQAWVVVVLVCVYVSSFAWSWGPLGWLIPSETFPLETRTAGFAFAVS 429
Query: 427 TNMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLISLIFSATMLPETKGIPIDEMVDRAWK 486
+NM+FTFVIAQ+FLSM+C MR GIF FF GW++I IF +LPETKG+PIDEM +R WK
Sbjct: 430 SNMLFTFVIAQSFLSMMCHMRAGIFLFFAGWIVIMGIFVLFLLPETKGVPIDEMKERVWK 489
Query: 487 KHWYWKSYFKNDNHDGSKRT 506
KH WK + +D D +K+T
Sbjct: 490 KHPIWKKFMSDDADDRAKKT 509
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 518 | ||||||
| TAIR|locus:2179734 | 507 | AT5G26250 [Arabidopsis thalian | 0.974 | 0.996 | 0.608 | 2.6e-166 | |
| TAIR|locus:2083003 | 507 | STP6 "sugar transporter 6" [Ar | 0.969 | 0.990 | 0.598 | 9.3e-162 | |
| TAIR|locus:2025102 | 498 | STP2 "sugar transporter 2" [Ar | 0.940 | 0.977 | 0.608 | 3.8e-156 | |
| TAIR|locus:2151074 | 526 | MSS1 "AT5G26340" [Arabidopsis | 0.949 | 0.935 | 0.543 | 1.2e-145 | |
| TAIR|locus:2166781 | 514 | STP11 "sugar transporter 11" [ | 0.955 | 0.963 | 0.524 | 9.5e-137 | |
| TAIR|locus:2132213 | 513 | STP7 "sugar transporter protei | 0.955 | 0.964 | 0.502 | 2.9e-135 | |
| TAIR|locus:2092221 | 514 | AT3G19940 [Arabidopsis thalian | 0.942 | 0.949 | 0.506 | 1.2e-134 | |
| TAIR|locus:2011957 | 517 | STP9 "sugar transporter 9" [Ar | 0.969 | 0.970 | 0.493 | 4.8e-133 | |
| TAIR|locus:2202044 | 522 | STP1 "AT1G11260" [Arabidopsis | 0.965 | 0.957 | 0.493 | 8.4e-129 | |
| TAIR|locus:2092286 | 514 | STP4 "sugar transporter 4" [Ar | 0.949 | 0.957 | 0.481 | 6.1e-126 |
| TAIR|locus:2179734 AT5G26250 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1618 (574.6 bits), Expect = 2.6e-166, P = 2.6e-166
Identities = 308/506 (60%), Positives = 374/506 (73%)
Query: 3 AIALSETGNGKDFPAKLTGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVY 62
A+ +S GN K F AK+T V +C IIAA GGL+FGYDIGIS GVT MDDFL +FFP VY
Sbjct: 2 AVVISSNGNSKSFDAKMTVYVFICVIIAAVGGLIFGYDIGISGGVTAMDDFLKEFFPSVY 61
Query: 63 EKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIG 122
E+K A E+NYCKYDNQ+LQLFTSSLYLAA+VA F AS C K GR+PT+Q AS+FFLIG
Sbjct: 62 ERKKHAHENNYCKYDNQFLQLFTSSLYLAALVASFFASATCSKLGRRPTMQLASIFFLIG 121
Query: 123 AILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGIL 182
L A N+ MLI GR+ LG GVGFGNQAVPLF+SEIAP + RGGLNI FQL++T+GIL
Sbjct: 122 VGLAAGAVNIYMLIIGRILLGFGVGFGNQAVPLFLSEIAPARLRGGLNIVFQLMVTIGIL 181
Query: 183 AANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTLRK 242
AN++NY TS IHPYGWRI+LGGA +PAL LL GS +I ETP SLIER K ++G TL+K
Sbjct: 182 IANIVNYFTSSIHPYGWRIALGGAGIPALILLFGSLLICETPTSLIERNKTKEGKETLKK 241
Query: 243 IRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMF 302
IRGV+DV++EY I A +I+ +K PY LMK +SRP + G + QQ TGIN +MF
Sbjct: 242 IRGVEDVDEEYESIVHACDIARQVKDPYTKLMKPASRPPFVIGMLLQFFQQFTGINAIMF 301
Query: 303 YAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVXXXXXXXXXXXX 362
YAPVLFQT+G+G++A+LLSAV++GTINV ST V I LVDK GR+ LL+
Sbjct: 302 YAPVLFQTVGFGNDAALLSAVVTGTINVLSTFVGIFLVDKTGRRFLLLQSSVHMLICQLV 361
Query: 363 XGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYF 422
G+IL L T T+ A VVVI VCV+V GFAWSWGP+ WLI SE +PLETR G+
Sbjct: 362 IGIILAKDLDVTGTLARPQALVVVIFVCVYVMGFAWSWGPLGWLIPSETFPLETRTEGFA 421
Query: 423 FAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLISLIFSATMLPETKGIPIDEMVD 482
AVS NM FTFVIAQAFLSMLC M+ GIFFFF+GW+++ +F+ +PETKG+ ID+M D
Sbjct: 422 LAVSCNMFFTFVIAQAFLSMLCAMKSGIFFFFSGWIVVMGLFALFFVPETKGVSIDDMRD 481
Query: 483 RAWKKHWYWKSYF-KNDNHDGSKRTE 507
WK HWYWK + + D HD KRT+
Sbjct: 482 SVWKLHWYWKRFMLEEDEHDVEKRTD 507
|
|
| TAIR|locus:2083003 STP6 "sugar transporter 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1575 (559.5 bits), Expect = 9.3e-162, P = 9.3e-162
Identities = 302/505 (59%), Positives = 374/505 (74%)
Query: 3 AIALSETGNGKDFPAKLTGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVY 62
A+ +S N F AK+T V +C +IAA GGL+FGYDIGIS GV+ MDDFL +FFP V+
Sbjct: 2 AVVVSNA-NAPAFEAKMTVYVFICVMIAAVGGLIFGYDIGISGGVSAMDDFLKEFFPAVW 60
Query: 63 EKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIG 122
E+K E+NYCKYDNQ+LQLFTSSLYLAA+VA F+AS C K GR+PT+Q AS+FFLIG
Sbjct: 61 ERKKHVHENNYCKYDNQFLQLFTSSLYLAALVASFVASATCSKLGRRPTMQFASIFFLIG 120
Query: 123 AILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGIL 182
L A NL MLI GRL LG GVGFGNQAVPLF+SEIAP + RGGLNI FQL++T+GIL
Sbjct: 121 VGLTAGAVNLVMLIIGRLFLGFGVGFGNQAVPLFLSEIAPAQLRGGLNIVFQLMVTIGIL 180
Query: 183 AANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTLRK 242
AN++NY T+ +HPYGWRI+LGGA +PA+ LL GS +I+ETP SLIER K E+G LRK
Sbjct: 181 IANIVNYFTATVHPYGWRIALGGAGIPAVILLFGSLLIIETPTSLIERNKNEEGKEALRK 240
Query: 243 IRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMF 302
IRGV D+ EY I A +I++ +K PYR L+K +SRP I G + + QQ TGIN +MF
Sbjct: 241 IRGVDDINDEYESIVHACDIASQVKDPYRKLLKPASRPPFIIGMLLQLFQQFTGINAIMF 300
Query: 303 YAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVXXXXXXXXXXXX 362
YAPVLFQT+G+GS+A+LLSAVI+G+INV +T V I LVD+ GR+ LL+
Sbjct: 301 YAPVLFQTVGFGSDAALLSAVITGSINVLATFVGIYLVDRTGRRFLLLQSSVHMLICQLI 360
Query: 363 XGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYF 422
G+IL L T T+ A VVVI VCV+V GFAWSWGP+ WLI SE +PLETR+AG+
Sbjct: 361 IGIILAKDLGVTGTLGRPQALVVVIFVCVYVMGFAWSWGPLGWLIPSETFPLETRSAGFA 420
Query: 423 FAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLISLIFSATMLPETKGIPIDEMVD 482
AVS NM FTFVIAQAFLSMLC MR GIFFFF+GW+++ +F+ +PETKGI ID+M +
Sbjct: 421 VAVSCNMFFTFVIAQAFLSMLCGMRSGIFFFFSGWIIVMGLFAFFFIPETKGIAIDDMRE 480
Query: 483 RAWKKHWYWKSYF--KNDNHDGSKR 505
WK HW+WK Y ++D+HD KR
Sbjct: 481 SVWKPHWFWKRYMLPEDDHHDIEKR 505
|
|
| TAIR|locus:2025102 STP2 "sugar transporter 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1522 (540.8 bits), Expect = 3.8e-156, P = 3.8e-156
Identities = 300/493 (60%), Positives = 364/493 (73%)
Query: 8 ETGNGKDFPAKLTGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHR 67
E G K FPAKLTGQV +C +IAA GGLMFGYDIGIS GVT+MD FL+ FFP VYEKKHR
Sbjct: 9 EEGT-KAFPAKLTGQVFLCCVIAAVGGLMFGYDIGISGGVTSMDTFLLDFFPHVYEKKHR 67
Query: 68 AKEDNYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNC 127
E+NYCK+D+Q LQLFTSSLYLA I A F++S V R FGRKPTI AS+FFL+GAILN
Sbjct: 68 VHENNYCKFDDQLLQLFTSSLYLAGIFASFISSYVSRAFGRKPTIMLASIFFLVGAILNL 127
Query: 128 LAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLI 187
AQ LGMLI GR+ LG G+GFGNQ VPLFISEIAP +YRGGLN+ FQ LIT+GILAA+ +
Sbjct: 128 SAQELGMLIGGRILLGFGIGFGNQTVPLFISEIAPARYRGGLNVMFQFLITIGILAASYV 187
Query: 188 NYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTLRKIRGVK 247
NY TS + GWR SLGGAAVPAL LL+GS I ETPASLIERGK E+G LRKIRG++
Sbjct: 188 NYLTSTLKN-GWRYSLGGAAVPALILLIGSFFIHETPASLIERGKDEKGKQVLRKIRGIE 246
Query: 248 DVEKEYAEICRATEISNLIKHPYRSLMKKS-SRPQLICGTFIHMLQQLTGINVVMFYAPV 306
D+E E+ EI ATE++ +K P++ L KS +RP L+CGT + QQ TGINVVMFYAPV
Sbjct: 247 DIELEFNEIKYATEVATKVKSPFKELFTKSENRPPLVCGTLLQFFQQFTGINVVMFYAPV 306
Query: 307 LFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVXXXXXXXXXXXXXGVI 366
LFQTMG G NASL+S V++ +N +T++++++VD AGR+ LL+ G I
Sbjct: 307 LFQTMGSGDNASLISTVVTNGVNAIATVISLLVVDFAGRRCLLMEGALQMTATQMTIGGI 366
Query: 367 LKMFLLTTN--TMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFA 424
L L T VP +V+IL+CV+V+GFAWSWGP+ WL+ SEIYPLE RNAGYF A
Sbjct: 367 LLAHLKLVGPITGHAVPL-IVLILICVYVSGFAWSWGPLGWLVPSEIYPLEVRNAGYFCA 425
Query: 425 VSTNMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLISLIFSATMLPETKGIPIDEMVDRA 484
V+ NMV TF+I Q FLS LC+ R +FFFF +I +F LPETKG+PI+EM ++
Sbjct: 426 VAMNMVCTFIIGQFFLSALCRFRSLLFFFFGIMNIIMGLFVVFFLPETKGVPIEEMAEKR 485
Query: 485 WKKHWYWKSYFKN 497
WK H WK YFK+
Sbjct: 486 WKTHPRWKKYFKD 498
|
|
| TAIR|locus:2151074 MSS1 "AT5G26340" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1423 (506.0 bits), Expect = 1.2e-145, P = 1.2e-145
Identities = 270/497 (54%), Positives = 363/497 (73%)
Query: 9 TGNGKDFPAKLTGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRA 68
+ NG +F AK+T V++ I+AA GGLMFGYD+G+S GVT+M DFL KFFP+VY K
Sbjct: 9 SANGVEFEAKITPIVIISCIMAATGGLMFGYDVGVSGGVTSMPDFLEKFFPVVYRKVVAG 68
Query: 69 --KEDNYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILN 126
K+ NYCKYDNQ LQLFTSSLYLA + A F AS R GR+ T+ A VFF+IG LN
Sbjct: 69 ADKDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRTLGRRLTMLIAGVFFIIGVALN 128
Query: 127 CLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANL 186
AQ+L MLIAGR+ LG GVGF NQAVPLF+SEIAP + RGGLNI FQL +T+GIL ANL
Sbjct: 129 AGAQDLAMLIAGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANL 188
Query: 187 INYGTSRIHP-YGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTLRKIRG 245
+NYGT++I +GWR+SLG A +PAL L +G+ ++ ETP SL+ERG+ ++G LR+IRG
Sbjct: 189 VNYGTAKIKGGWGWRLSLGLAGIPALLLTVGALLVTETPNSLVERGRLDEGKAVLRRIRG 248
Query: 246 VKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAP 305
+VE E+A++ A+ ++ +KHP+R+L+++ +RPQL+ + + QQ TGIN +MFYAP
Sbjct: 249 TDNVEPEFADLLEASRLAKEVKHPFRNLLQRRNRPQLVIAVALQIFQQCTGINAIMFYAP 308
Query: 306 VLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVXXXXXXXXXXXXXGV 365
VLF T+G+GS+ASL SAV++G +NV STLV+I VDK GR++LL+ +
Sbjct: 309 VLFSTLGFGSDASLYSAVVTGAVNVLSTLVSIYSVDKVGRRVLLLEAGVQMFFSQVVIAI 368
Query: 366 ILKMFLLTTNT-MPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFA 424
IL + + T+T + A +VV+++C +VA FAWSWGP+ WLI SE +PLETR+AG
Sbjct: 369 ILGVKVTDTSTNLSKGFAILVVVMICTYVAAFAWSWGPLGWLIPSETFPLETRSAGQSVT 428
Query: 425 VSTNMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLISLIFSATMLPETKGIPIDEMVDRA 484
V N++FTF+IAQAFLSMLC ++GIF FF+ W+LI +F +LPETK IPI+EM +R
Sbjct: 429 VCVNLLFTFIIAQAFLSMLCHFKFGIFIFFSAWVLIMSVFVMFLLPETKNIPIEEMTERV 488
Query: 485 WKKHWYWKSYFKNDNHD 501
WKKHW+W + F +D++D
Sbjct: 489 WKKHWFW-ARFMDDHND 504
|
|
| TAIR|locus:2166781 STP11 "sugar transporter 11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1339 (476.4 bits), Expect = 9.5e-137, P = 9.5e-137
Identities = 263/501 (52%), Positives = 352/501 (70%)
Query: 6 LSETGNGKDFPAKLTGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKK 65
+ E+G+G D+ ++T V++ I+AA GGL+FGYDIGIS GV +M+DFL KFFP V +
Sbjct: 7 IDESGHGGDYEGRVTAFVMITCIVAAMGGLLFGYDIGISGGVISMEDFLTKFFPDVLRQM 66
Query: 66 H--RAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGA 123
R +E YCKYDN+ L LFTSSLYLAA+ A FLAS + R FGRK ++ S+ FL GA
Sbjct: 67 QNKRGRETEYCKYDNELLTLFTSSLYLAALFASFLASTITRLFGRKVSMVIGSLAFLSGA 126
Query: 124 ILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILA 183
+LN LA NL MLI GRL LG+GVGF NQ+VPL++SE+AP K RG LNI FQL IT+GILA
Sbjct: 127 LLNGLAINLEMLIIGRLFLGVGVGFANQSVPLYLSEMAPAKIRGALNIGFQLAITIGILA 186
Query: 184 ANLINYGTSRI-HPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTLRK 242
AN++NY T ++ + GWR+SLG A VPA+ +L+G + +TP S++ERG +E+ L+K
Sbjct: 187 ANIVNYVTPKLQNGIGWRLSLGLAGVPAVMMLVGCFFLPDTPNSILERGNKEKAKEMLQK 246
Query: 243 IRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMF 302
IRG +VE E+ E+C A E + +KHP+ ++M+ RPQL TFI QQLTGINV+MF
Sbjct: 247 IRGTMEVEHEFNELCNACEAAKKVKHPWTNIMQARYRPQLTFCTFIPFFQQLTGINVIMF 306
Query: 303 YAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVXXXXXXXXXXXX 362
YAPVLF+T+G+G++ASL+SAVI+G +NV ST+V+I VDK GR+ L +
Sbjct: 307 YAPVLFKTIGFGNDASLISAVITGLVNVLSTIVSIYSVDKFGRRALFLQGGFQMIVTQIA 366
Query: 363 XGVIL--KMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAG 420
G ++ K + V A +++ L+C++VAGFAWSWGP+ WL+ SEI PLE R+AG
Sbjct: 367 VGSMIGWKFGFNGEGNLSGVDADIILALICLYVAGFAWSWGPLGWLVPSEICPLEIRSAG 426
Query: 421 YFFAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLISLIFSATMLPETKGIPIDEM 480
VS NM FTF I Q FL+MLC M++G+F+FF G +LI IF +LPETKG+PI+EM
Sbjct: 427 QSLNVSVNMFFTFFIGQFFLTMLCHMKFGLFYFFAGMVLIMTIFIYFLLPETKGVPIEEM 486
Query: 481 VDRAWKKHWYWKSYFKNDNHD 501
+ WK+H YW Y ND+ D
Sbjct: 487 -GKVWKEHRYWGKYSNNDDGD 506
|
|
| TAIR|locus:2132213 STP7 "sugar transporter protein 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1325 (471.5 bits), Expect = 2.9e-135, P = 2.9e-135
Identities = 250/498 (50%), Positives = 341/498 (68%)
Query: 13 KDFPAKLTGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDN 72
+ + K+T V++ ++AA GG +FGYDIGIS GVT+MD+FL +FF VYEKK +A E N
Sbjct: 17 EQYQGKVTSYVIIACLVAAIGGSIFGYDIGISGGVTSMDEFLEEFFHTVYEKKKQAHESN 76
Query: 73 YCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNL 132
YCKYDNQ L FTSSLYLA +V+ +AS + R +GR+ +I + FLIG+ LN A NL
Sbjct: 77 YCKYDNQGLAAFTSSLYLAGLVSTLVASPITRNYGRRASIVCGGISFLIGSGLNAGAVNL 136
Query: 133 GMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTS 192
ML+AGR+ LG+G+GFGNQAVPL++SE+AP RGGLN+ FQL T+GI AN++NYGT
Sbjct: 137 AMLLAGRIMLGVGIGFGNQAVPLYLSEVAPTHLRGGLNMMFQLATTIGIFTANMVNYGTQ 196
Query: 193 RIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKE 252
++ P+GWR+SLG AA PAL + LG + ETP SL+ERG E+G L K+RG ++V E
Sbjct: 197 QLKPWGWRLSLGLAAFPALLMTLGGYFLPETPNSLVERGLTERGRRVLVKLRGTENVNAE 256
Query: 253 YAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQTMG 312
++ A+E++N IKHP+R++++K RPQL+ + M Q LTGIN ++FYAPVLFQTMG
Sbjct: 257 LQDMVDASELANSIKHPFRNILQKRHRPQLVMAICMPMFQILTGINSILFYAPVLFQTMG 316
Query: 313 YGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVXXXXXXXXXXXXXGVILKMFLL 372
+G NASL S+ ++G + V ST ++I LVD+ GR+ LL+ VIL +
Sbjct: 317 FGGNASLYSSALTGAVLVLSTFISIGLVDRLGRRALLITGGIQMIICQVIVAVILGVKFG 376
Query: 373 TTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFT 432
+ + +VVI +C+FV F WSWGP+ W I SEI+PLETR+AG V+ N++FT
Sbjct: 377 DNQELSKGYSVIVVIFICLFVVAFGWSWGPLGWTIPSEIFPLETRSAGQSITVAVNLLFT 436
Query: 433 FVIAQAFLSMLCKMRWGIFFFFTGWLLISLIFSATMLPETKGIPIDEMVDRAWKKHWYWK 492
F+IAQAFL +LC ++GIF FF GW+ + IF +LPETKG+PI+EM W KHW+WK
Sbjct: 437 FIIAQAFLGLLCAFKFGIFLFFAGWVTVMTIFVYFLLPETKGVPIEEMT-LLWSKHWFWK 495
Query: 493 SYFKNDNH--DGSKRTEV 508
+ + D SK V
Sbjct: 496 KVLPDATNLEDESKNVSV 513
|
|
| TAIR|locus:2092221 AT3G19940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1319 (469.4 bits), Expect = 1.2e-134, P = 1.2e-134
Identities = 249/492 (50%), Positives = 346/492 (70%)
Query: 10 GNGKDFPAKLTGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAK 69
G G+ + +T V++ I+AA GGL+FGYD+GIS GVT+M++FL KFFP V + +AK
Sbjct: 12 GGGRSYEGGVTAFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLTKFFPQVESQMKKAK 71
Query: 70 EDN-YCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCL 128
D YCK+DNQ LQLFTSSLYLAA+VA F+AS++ RK GRK ++ + FLIGA+ N
Sbjct: 72 HDTAYCKFDNQMLQLFTSSLYLAALVASFMASVITRKHGRKVSMFIGGLAFLIGALFNAF 131
Query: 129 AQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLIN 188
A N+ MLI GRL LG+GVGF NQ+ P+++SE+AP K RG LNI FQ+ IT+GIL ANLIN
Sbjct: 132 AVNVSMLIIGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGILVANLIN 191
Query: 189 YGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTLRKIRGVKD 248
YGTS++ +GWR+SLG AAVPA+ +++GS I+ +TP S++ERGK E+ L+KIRG +
Sbjct: 192 YGTSKMAQHGWRVSLGLAAVPAVVMVIGSFILPDTPNSMLERGKNEEAKQMLKKIRGADN 251
Query: 249 VEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLF 308
V+ E+ ++ A E + +++P++++M+ RP LI + I QQ+TGINV+MFYAPVLF
Sbjct: 252 VDHEFQDLIDAVEAAKKVENPWKNIMESKYRPALIFCSAIPFFQQITGINVIMFYAPVLF 311
Query: 309 QTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVXXXXXXXXXXXXXGVILK 368
+T+G+G +A+L+SAVI+G +N+ ST V+I VD+ GR++L + G +
Sbjct: 312 KTLGFGDDAALMSAVITGVVNMLSTFVSIYAVDRYGRRLLFLEGGIQMFICQLLVGSFIG 371
Query: 369 MFLLTTNTMPTVPAKV--VVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVS 426
T+ T PA ++ +CV+VAGFAWSWGP+ WL+ SEI PLE R AG VS
Sbjct: 372 ARFGTSGTGTLTPATADWILAFICVYVAGFAWSWGPLGWLVPSEICPLEIRPAGQAINVS 431
Query: 427 TNMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLISLIFSATMLPETKGIPIDEMVDRAWK 486
NM FTF+I Q FL+MLC M++G+F+FF + I +F +LPETKG+PI+EM R WK
Sbjct: 432 VNMFFTFLIGQFFLTMLCHMKFGLFYFFASMVAIMTVFIYFLLPETKGVPIEEM-GRVWK 490
Query: 487 KHWYWKSYFKND 498
+HW+WK Y D
Sbjct: 491 QHWFWKKYIPED 502
|
|
| TAIR|locus:2011957 STP9 "sugar transporter 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1304 (464.1 bits), Expect = 4.8e-133, P = 4.8e-133
Identities = 250/507 (49%), Positives = 352/507 (69%)
Query: 10 GNGKDFPAKLTGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAK 69
G G + +T V++ I+AA GGL+FGYD+GIS GVT+M++FL KFFP V ++ H A+
Sbjct: 12 GGGNSYEGGVTVFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLSKFFPEVDKQMHEAR 71
Query: 70 EDN-YCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCL 128
+ YCK+DNQ LQLFTSSLYLAA+ + F+AS V RK+GRK ++ V FLIG++ N
Sbjct: 72 RETAYCKFDNQLLQLFTSSLYLAALASSFVASAVTRKYGRKISMFVGGVAFLIGSLFNAF 131
Query: 129 AQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLIN 188
A N+ MLI GRL LG+GVGF NQ+ P+++SE+AP K RG LNI FQ+ IT+GIL ANLIN
Sbjct: 132 ATNVAMLIVGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGILIANLIN 191
Query: 189 YGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTLRKIRGVKD 248
YGTS++ GWR+SLG AAVPA+ +++GS ++ +TP S++ERGK EQ L+KIRG +
Sbjct: 192 YGTSQMAKNGWRVSLGLAAVPAVIMVIGSFVLPDTPNSMLERGKYEQAREMLQKIRGADN 251
Query: 249 VEKEYAEICRATEISNLIKHPYRSLMKKSS-RPQLICGTFIHMLQQLTGINVVMFYAPVL 307
V++E+ ++C A E + + +P++++ +++ RP L+ + I QQ+TGINV+MFYAPVL
Sbjct: 252 VDEEFQDLCDACEAAKKVDNPWKNIFQQAKYRPALVFCSAIPFFQQITGINVIMFYAPVL 311
Query: 308 FQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVXXXXXXXXXXXXXGVIL 367
F+T+G+ +ASL+SAVI+G +NV STLV+I VD+ GR+IL + G ++
Sbjct: 312 FKTLGFADDASLISAVITGAVNVVSTLVSIYAVDRYGRRILFLEGGIQMIVSQIVVGTLI 371
Query: 368 KMFLLTTNTMPTVPAKV--VVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAV 425
M TT + PA ++ +C++VAGFAWSWGP+ WL+ SEI PLE R AG V
Sbjct: 372 GMKFGTTGSGTLTPATADWILAFICLYVAGFAWSWGPLGWLVPSEICPLEIRPAGQAINV 431
Query: 426 STNMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLISLIFSATMLPETKGIPIDEMVDRAW 485
S NM FTF+I Q FL+MLC M++G+F+FF G + + +F +LPETKG+PI+EM R W
Sbjct: 432 SVNMFFTFLIGQFFLTMLCHMKFGLFYFFGGMVAVMTVFIYFLLPETKGVPIEEM-GRVW 490
Query: 486 KKHWYWKSYFKNDNHDGSKRTEVAAEI 512
K+H +WK Y +D G E+
Sbjct: 491 KQHPFWKRYMPDDAVIGGGEENYVKEV 517
|
|
| TAIR|locus:2202044 STP1 "AT1G11260" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1264 (450.0 bits), Expect = 8.4e-129, P = 8.4e-129
Identities = 251/509 (49%), Positives = 349/509 (68%)
Query: 1 MPAIALSETGNG-KDFPAKLTGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFP 59
MPA G+G K +P KLT VL ++AA GGL+FGYDIGIS GVT+M FL +FFP
Sbjct: 1 MPAGGFV-VGDGQKAYPGKLTPFVLFTCVVAAMGGLIFGYDIGISGGVTSMPSFLKRFFP 59
Query: 60 LVYEKKHR-AKEDNYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVF 118
VY K+ A + YC+YD+ L +FTSSLYLAA+++ +AS V RKFGR+ ++ +
Sbjct: 60 SVYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGRRLSMLFGGIL 119
Query: 119 FLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLIT 178
F GA++N A+++ MLI GR+ LG G+GF NQAVPL++SE+AP KYRG LNI FQL IT
Sbjct: 120 FCAGALINGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGALNIGFQLSIT 179
Query: 179 VGILAANLINYGTSRIHP-YGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGL 237
+GIL A ++NY ++I +GWR+SLGGA VPAL + +GS ++ +TP S+IERG+ E+
Sbjct: 180 IGILVAEVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGSLVLPDTPNSMIERGQHEEAK 239
Query: 238 YTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGI 297
LR+IRGV DV +E+ ++ A++ S I+HP+R+L+++ RP L I QQLTGI
Sbjct: 240 TKLRRIRGVDDVSQEFDDLVAASKESQSIEHPWRNLLRRKYRPHLTMAVMIPFFQQLTGI 299
Query: 298 NVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVXXXXXXX 357
NV+MFYAPVLF T+G+ ++ASL+SAV++G++NVA+TLV+I VD+ GR+ L +
Sbjct: 300 NVIMFYAPVLFNTIGFTTDASLMSAVVTGSVNVAATLVSIYGVDRWGRRFLFLEGGTQML 359
Query: 358 XXXXXXGVIL-KMFLL--TTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPL 414
+ F + T +P A VVV +C++VAGFAWSWGP+ WL+ SEI+PL
Sbjct: 360 ICQAVVAACIGAKFGVDGTPGELPKWYAIVVVTFICIYVAGFAWSWGPLGWLVPSEIFPL 419
Query: 415 ETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLISLIFSATMLPETKG 474
E R+A VS NM+FTF+IAQ FL+MLC +++G+F F ++++ IF LPETKG
Sbjct: 420 EIRSAAQSITVSVNMIFTFIIAQIFLTMLCHLKFGLFLVFAFFVVVMSIFVYIFLPETKG 479
Query: 475 IPIDEMVDRAWKKHWYWKSYFKNDNHDGS 503
IPI+EM + W+ HWYW S F D G+
Sbjct: 480 IPIEEM-GQVWRSHWYW-SRFVEDGEYGN 506
|
|
| TAIR|locus:2092286 STP4 "sugar transporter 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1237 (440.5 bits), Expect = 6.1e-126, P = 6.1e-126
Identities = 239/496 (48%), Positives = 337/496 (67%)
Query: 6 LSETGNGKDFPAKLTGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKK 65
+S+T +++ KLT +V V I AFGGL+FGYD+GIS GVT+M+ FL +FFP VY+K
Sbjct: 6 VSQTPGVRNYNYKLTPKVFVTCFIGAFGGLIFGYDLGISGGVTSMEPFLEEFFPYVYKKM 65
Query: 66 HRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAIL 125
A E+ YC++D+Q L LFTSSLY+AA+V+ AS + R FGRK ++ F IG+
Sbjct: 66 KSAHENEYCRFDSQLLTLFTSSLYVAALVSSLFASTITRVFGRKWSMFLGGFTFFIGSAF 125
Query: 126 NCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAAN 185
N AQN+ ML+ GR+ LG GVGF NQ+VP+++SE+APP RG N FQ+ I GI+ A
Sbjct: 126 NGFAQNIAMLLIGRILLGFGVGFANQSVPVYLSEMAPPNLRGAFNNGFQVAIIFGIVVAT 185
Query: 186 LINYGTSRIHP-YGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTLRKIR 244
+INY T+++ GWRISLG A VPA+ +++G+ I+ +TP SLIERG E+ L+ IR
Sbjct: 186 IINYFTAQMKGNIGWRISLGLACVPAVMIMIGALILPDTPNSLIERGYTEEAKEMLQSIR 245
Query: 245 GVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYA 304
G +V++E+ ++ A+E S +KHP++++M RPQLI FI QQLTGINV+ FYA
Sbjct: 246 GTNEVDEEFQDLIDASEESKQVKHPWKNIMLPRYRPQLIMTCFIPFFQQLTGINVITFYA 305
Query: 305 PVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVXXXXXXXXXXXXXG 364
PVLFQT+G+GS ASLLSA+++G I + T V++ VD+ GR+IL + G
Sbjct: 306 PVLFQTLGFGSKASLLSAMVTGIIELLCTFVSVFTVDRFGRRILFLQGGIQMLVSQIAIG 365
Query: 365 VIL--KMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYF 422
++ K + T + A ++V L+C++VAGFAWSWGP+ WL+ SEI PLE R+A
Sbjct: 366 AMIGVKFGVAGTGNIGKSDANLIVALICIYVAGFAWSWGPLGWLVPSEISPLEIRSAAQA 425
Query: 423 FAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLISLIFSATMLPETKGIPIDEMVD 482
VS NM FTF++AQ FL+MLC M++G+FFFF +++I IF MLPETK +PI+EM +
Sbjct: 426 INVSVNMFFTFLVAQLFLTMLCHMKFGLFFFFAFFVVIMTIFIYLMLPETKNVPIEEM-N 484
Query: 483 RAWKKHWYWKSYFKND 498
R WK HW+W + ++
Sbjct: 485 RVWKAHWFWGKFIPDE 500
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q41144 | STC_RICCO | No assigned EC number | 0.5108 | 0.9633 | 0.9541 | N/A | no |
| C0SPB2 | YWTG_BACSU | No assigned EC number | 0.3369 | 0.8050 | 0.9124 | yes | no |
| Q9SBA7 | STP8_ARATH | No assigned EC number | 0.6205 | 0.9749 | 0.9960 | yes | no |
| Q39524 | HUP2_PARKE | No assigned EC number | 0.5042 | 0.9015 | 0.8648 | N/A | no |
| Q10710 | STA_RICCO | No assigned EC number | 0.5062 | 0.9247 | 0.9176 | N/A | no |
| P49374 | HGT1_KLULA | No assigned EC number | 0.3097 | 0.8764 | 0.8239 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 518 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 1e-111 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 1e-104 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 9e-67 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 2e-14 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-14 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 1e-12 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 1e-08 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 8e-07 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-06 | |
| pfam06609 | 598 | pfam06609, TRI12, Fungal trichothecene efflux pump | 3e-05 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 5e-05 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-04 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 2e-04 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 0.001 | |
| pfam13347 | 425 | pfam13347, MFS_2, MFS/sugar transport protein | 0.001 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 0.003 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 337 bits (866), Expect = e-111
Identities = 158/460 (34%), Positives = 240/460 (52%), Gaps = 20/460 (4%)
Query: 26 CSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFT 85
+++AA GG +FGYD G+ T+ F +F L C L
Sbjct: 1 LALVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIG--------ACAASTVLSGLIV 52
Query: 86 SSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQ--NLGMLIAGRLSLG 143
S + ++ A + +FGRK ++ +V F+IGA+L A+ + MLI GR+ +G
Sbjct: 53 SIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVG 112
Query: 144 IGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPY-GWRIS 202
+GVG + VP++ISEIAP K RG L +QL IT GIL A +I G ++ GWRI
Sbjct: 113 LGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIP 172
Query: 203 LGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEI 262
LG VPA+ LL+G + E+P L+ +GK E+ L K+RGV DV++E E + E
Sbjct: 173 LGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQEEKDSLER 232
Query: 263 SNLIKHPYR--SLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQTMGYGSNASLL 320
S + K+ R +L+ G + + QQLTGIN + +Y+P +F+T+G SLL
Sbjct: 233 SVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSD--SLL 290
Query: 321 SAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTV 380
+I G +N T +AI LVD+ GR+ LL+ A M IC +GV L
Sbjct: 291 VTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGV---ALLGVAK--SKG 345
Query: 381 PAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFL 440
V ++ + +F+A FA WGP+ W+I SE++PL R A + N + F+I F
Sbjct: 346 AGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFP 405
Query: 441 SMLCKMRWGIFFFFTGWLLISLIFSATMLPETKGIPIDEM 480
+ + +F F G L++ ++F +PETKG ++E+
Sbjct: 406 IITGAIGGYVFLVFAGLLVLFILFVFFFVPETKGRTLEEI 445
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 320 bits (822), Expect = e-104
Identities = 165/488 (33%), Positives = 247/488 (50%), Gaps = 28/488 (5%)
Query: 6 LSETGNGKDFPAKLTGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKK 65
SE +V + S+IAA GGLMFGYD G+ G + F KF +
Sbjct: 9 ASELLVTPAGLGSTYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDS- 67
Query: 66 HRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAIL 125
Y + L S + + A + +FGRK ++ ++ F+IGAIL
Sbjct: 68 ----------YSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAIL 117
Query: 126 N---CLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGIL 182
A ++ MLI GR+ LGIGVG + VP+++SEIAP RG L +QL IT GIL
Sbjct: 118 MGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGIL 177
Query: 183 AANLINYGT-SRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTLR 241
A G S + GWRI LG +PA L LG + E+P L+ +G+ E+ +L
Sbjct: 178 VAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLA 237
Query: 242 KIRGVKDVEKEYAEICRATEISNLIK--------HPYRSLMKKSSRPQLICGTFIHMLQQ 293
++RG +KE + +I I+ S + R +L G + QQ
Sbjct: 238 RLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFS-STRRIRRRLFLGVVLQWFQQ 296
Query: 294 LTGINVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAA 353
TGIN +M+Y+P +F+ G ++ + L ++I G +N A T VAI LVD+ GR+ LL+ A
Sbjct: 297 FTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGA 356
Query: 354 IQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYP 413
M IC +G++ F+ ++ V ++ + +F+A FA WGP+ W+I SEI+P
Sbjct: 357 AGMAICLFVLGILGASFVTGSS---KSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFP 413
Query: 414 LETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWG-IFFFFTGWLLISLIFSATMLPET 472
L R G AV+ N + F++ F +ML + G +F FF G ++ LIF LPET
Sbjct: 414 LSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPET 473
Query: 473 KGIPIDEM 480
KG ++E+
Sbjct: 474 KGRTLEEI 481
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 223 bits (569), Expect = 9e-67
Identities = 148/488 (30%), Positives = 232/488 (47%), Gaps = 54/488 (11%)
Query: 27 SIIAAFGGLMFGYDIG-ISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFT 85
+++A GGL+FGYD IS V +++ + A ++ N L
Sbjct: 14 TLVATLGGLLFGYDTAVISGTVESLNTVFV------------APQNLSESAANSLLGFCV 61
Query: 86 SSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQ---------NLGMLI 136
+S + I+ L +FGR+ +++ A+V F I A+ + + N G +
Sbjct: 62 ASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVP 121
Query: 137 A---GRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSR 193
R+ GIGVG + P++I+EIAP RG L Q I G L +NY +R
Sbjct: 122 EFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIAR 181
Query: 194 ------IHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTLRKIRGVK 247
++ GWR A+PAL L+ + ETP L+ RGKQEQ LRKI G
Sbjct: 182 SGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNT 241
Query: 248 DVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVL 307
+ EI + + ++ G + + QQ GINVV++YAP +
Sbjct: 242 LATQALQEIKHSLDHGRKTGGKLLMFGVGV----IVIGVMLSVFQQFVGINVVLYYAPEI 297
Query: 308 FQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVIL 367
F+T+G ++ +LL +I G IN+ T++AI+ VDK GRK L + A+ M AIG
Sbjct: 298 FKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGM-----AIG--- 349
Query: 368 KMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVST 427
MF L T P V ++ + +VA FA SWGP+CW++ SEI+P R AV+
Sbjct: 350 -MFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAA 408
Query: 428 NMVFTFVIAQAFLSMLCKMRWGIFFF---FTGWL-----LISLIFSATMLPETKGIPIDE 479
+ + ++ F M+ K W + F F+ W+ +++ +F +PETKG ++E
Sbjct: 409 QWIANYFVSWTF-PMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEE 467
Query: 480 MVDRAWKK 487
M + W+
Sbjct: 468 M-EALWEP 474
|
Length = 479 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 2e-14
Identities = 95/406 (23%), Positives = 169/406 (41%), Gaps = 29/406 (7%)
Query: 77 DNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLI 136
D + L S ++ ++ F+ + +FGRK + +++ + +L + N + +
Sbjct: 125 DAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFL 184
Query: 137 AGRLSLGIGV-GFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIH 195
RL +G+G+ G QAV L +E P K R + Q+ ++G++ L+ Y
Sbjct: 185 VFRLLVGMGIGGIWVQAVVL-NTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP--- 240
Query: 196 PYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTLRKIRGV--KDVEKEY 253
WR ++P L S + E+P LI +G+ E+ L L++I + K + E
Sbjct: 241 --DWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEV 298
Query: 254 AEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQTMGY 313
+ ++S+ K S + P L T M+ T +Y VL
Sbjct: 299 LSLSLEKDLSSSKKQY--SFLDLFRTPNLRKTTLCLMMLWFT--TAFSYYGLVLD-LGNL 353
Query: 314 GSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLT 373
G N L ISG + + + L+ ++L+D+ GR+ AA ++ A +L + +
Sbjct: 354 GGNI-YLDLFISGLVELPAKLITLLLIDRLGRR--YTMAASLLL----AGVALLLLLFV- 405
Query: 374 TNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTF 433
P + L + G ++ + L ++E+YP RN G V + M
Sbjct: 406 ----PVDLYFLRTALAVLGKFGITSAFQMVY-LYTAELYPTVVRNLG--VGVCSTMARVG 458
Query: 434 VIAQAFLSMLCKMRWGIFFFFTGWLLISLIFSATMLPETKGIPIDE 479
I FL L + + G L + LPETKG+P+ E
Sbjct: 459 SIISPFLVYLGEKWLFLPLVLFGGLALLAGILTLFLPETKGVPLPE 504
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 2e-14
Identities = 39/141 (27%), Positives = 59/141 (41%), Gaps = 2/141 (1%)
Query: 81 LQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRL 140
L S+ L + LA + +FGR+ + + F +G++L A +L +L+ GR
Sbjct: 36 AGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRF 95
Query: 141 SLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWR 200
LG+G G A I+E PPK RG F +G L L+ GWR
Sbjct: 96 LLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLL--AESLGWR 153
Query: 201 ISLGGAAVPALFLLLGSCIIV 221
A+ L L L ++
Sbjct: 154 WLFLILAILGLLLALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 1e-12
Identities = 63/350 (18%), Positives = 127/350 (36%), Gaps = 43/350 (12%)
Query: 81 LQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRL 140
+ L ++ L +A LA + +FGR+ + + F +G +L A +L +L+ R+
Sbjct: 34 IGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRV 93
Query: 141 SLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWR 200
G+G G A I++ PP+ RG +G L+ G +GWR
Sbjct: 94 LQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLL--GGLLASLFGWR 151
Query: 201 ISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRAT 260
+ A+ AL + + +++ P +R K +
Sbjct: 152 AAFLILAILALLAAVLAALLLPRPPPESKRPKPAEEA----------------------- 188
Query: 261 EISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQTMGYGSNASLL 320
P L+ + L+ + ++ Y P+ + +G + + L
Sbjct: 189 ---PAPLVPAWKLLLRDPVLWLLLALLLFGF----AFFALLTYLPLYQEVLGLSALLAGL 241
Query: 321 SAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTV 380
++G + L+ L D+ GR+ L+ A + +I+ + L + +
Sbjct: 242 LLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAA--------LGLALLSLTESS 293
Query: 381 PAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMV 430
+V +L+ F AG + P + S++ P E R + +
Sbjct: 294 LWLLVALLLLGFGAGLVF---PALNALVSDLAPKEERGTASGLYNTAGSL 340
|
Length = 346 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 1e-08
Identities = 56/274 (20%), Positives = 103/274 (37%), Gaps = 17/274 (6%)
Query: 83 LFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSL 142
LF++ L A A + + GR+ + + + F + +L LA N+ L+ R
Sbjct: 57 LFSAGLIGMAFGA-LFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLA 115
Query: 143 GIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRIS 202
G+G+G + +SE AP ++RG +G + I +GWR
Sbjct: 116 GLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFL--AGWLIPVFGWRSL 173
Query: 203 -LGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRATE 261
G P L LLL ++ P S + T+R+I + + E A
Sbjct: 174 FYVGGIAPLLLLLL---LMRFLPES--IDFLVSKRPETVRRIVNAIAPQMQA-EAQSALP 227
Query: 262 ISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYA-----PVLFQTMGYGSN 316
+ RS+ K + + T +L L + +V Y P L +G+ +
Sbjct: 228 EQKATQGTKRSVFKALFQGKTARITV--LLWLLYFMLLVGVYFLTNWLPKLMVELGFSLS 285
Query: 317 ASLLSAVISGTINVASTLVAIVLVDKAGRKILLV 350
+ + V +++ L D+ G ++ +
Sbjct: 286 LAATGGALFNFGGVIGSIIFGWLADRLGPRVTAL 319
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 8e-07
Identities = 64/319 (20%), Positives = 119/319 (37%), Gaps = 51/319 (15%)
Query: 134 MLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSR 193
+L+ RL G +G L+++E APP RG Q+ VG+L A L S
Sbjct: 98 LLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSY 157
Query: 194 I------HPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTLRKIRGVK 247
+ +GWRI +AV L L + ETP + K ++
Sbjct: 158 LLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKHKK------------ 205
Query: 248 DVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVL 307
+ I+ + + + G + + T + + L
Sbjct: 206 ----------KRGPIAETLTKHRKPFLL---------GLGLVIATTTTFYLITTYLPTYL 246
Query: 308 FQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVIL 367
QT+G +N++LL ++S + + ++ L D+ GR+ +L+ + + +
Sbjct: 247 TQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALL-----AVP 301
Query: 368 KMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAG----YFF 423
+ L + T+ +V+ + + GP+ + E++P E R G Y
Sbjct: 302 LLMALLDSGSFTLFFFLVLGMALIGGMYT----GPMGSFL-PELFPTEVRYTGASLAYNL 356
Query: 424 AVSTNMVFTFVIAQAFLSM 442
A + F IA A ++M
Sbjct: 357 AGAIFGGFAPYIAAALVAM 375
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 31/191 (16%), Positives = 64/191 (33%), Gaps = 14/191 (7%)
Query: 279 RPQLICGTFIHMLQQLTGINVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIV 338
L+ L ++ + L + +G + + L + G + L+ +
Sbjct: 174 LRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGL 233
Query: 339 LVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAW 398
L D+ GR+ LL + + L + LL + +V +L+ F GFA+
Sbjct: 234 LSDRLGRRRLL--------LLIGLLLAALGLLLLALAPSLALL--LVALLLLGFGLGFAF 283
Query: 399 SWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRW-GIFFFFTGW 457
SE+ P E R + + + +L + G+F
Sbjct: 284 PALLTLA---SELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAAL 340
Query: 458 LLISLIFSATM 468
L++ + +
Sbjct: 341 ALLAALLLLLL 351
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TRI12) | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 3e-05
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 13/124 (10%)
Query: 83 LFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSL 142
LF++ + V+ + + +FGR+P + A + L+GAI+ C A L+A L
Sbjct: 82 LFSTLWTMGQAVSILMMGRLTDRFGRRPFVIATHIIGLVGAIVGCTANKFNTLLAAMTLL 141
Query: 143 GIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPY-GWRI 201
G+ G A PLFI E+ K + +G+L + + PY G R+
Sbjct: 142 GVAAGPAG-ASPLFIGELMSNKTK-----------FLGLLIVSAPTIAMNGAGPYFGQRL 189
Query: 202 SLGG 205
++ G
Sbjct: 190 AIQG 193
|
This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster.It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes. Length = 598 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 5e-05
Identities = 63/331 (19%), Positives = 111/331 (33%), Gaps = 64/331 (19%)
Query: 82 QLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLS 141
QL T+ A+ A LA + + R+ + F++ +L+ LA + +L+ R
Sbjct: 52 QLITAYALGVALGAPLLALLT-GRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARAL 110
Query: 142 LGIGVG-FGNQAVPLFISEIAPPKYRGG----LNICFQLLITVGILAANLINYGTSRIHP 196
G+ G F + A L + + PP RG + L +G+ +
Sbjct: 111 AGLAHGVFWSIAAAL-AARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLG------QL 163
Query: 197 YGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAEI 256
+GWR + AV AL LL ++
Sbjct: 164 FGWRATFLAIAVLALLALLLLWKLLPPS-------------------------------- 191
Query: 257 CRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQTMGYGSN 316
EIS + P R+L++ RP ++ G L + + P L G+ +
Sbjct: 192 ----EISGSLPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVS 247
Query: 317 ASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNT 376
A L + G L+ L D+ R+ L+ + + + L T +
Sbjct: 248 AVSLVLLAFGIAGFIGNLLGGRLADRGPRRALIAALLL--------LALALLALTFTGAS 299
Query: 377 MPTVPAKVVVILVCVFVAGFAWSWGPICWLI 407
+ L +F+ GFA+S
Sbjct: 300 PA-------LALALLFLWGFAFSPALQGLQT 323
|
Length = 394 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 35/140 (25%), Positives = 59/140 (42%), Gaps = 3/140 (2%)
Query: 83 LFTSSLYLAAIVACFLASIVCRKFGRKPTIQAAS-VFFLIGAILNCLAQNLGMLIAGRLS 141
L S L I+ L ++ + GR+ + + +G +L LA +L +L+ L
Sbjct: 215 LLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLL 274
Query: 142 LGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRI 201
LG G+GF A+ SE+APP+ RG + F ++G L+ + G+
Sbjct: 275 LGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLL--AGLLLDTGGYGG 332
Query: 202 SLGGAAVPALFLLLGSCIIV 221
A AL L ++
Sbjct: 333 VFLILAALALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 2e-04
Identities = 41/172 (23%), Positives = 64/172 (37%), Gaps = 17/172 (9%)
Query: 86 SSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIG 145
+YL +V F + K GRK + A + Q G + RL G G
Sbjct: 209 LIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFG 268
Query: 146 VGFGNQAVPLFISEIAPPKYRG-GLNICFQLLITVGILAANLINYGTSRIHPYGWRISLG 204
+G V + +E + RG L+ + GI AA + + I YGW +G
Sbjct: 269 IGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAM---AWAIIPHYGWSFQMG 325
Query: 205 GA-------------AVPALFLLLGSCIIVETPASLIERGKQEQGLYTLRKI 243
A A P +F + + E+P +E GK ++ L+ I
Sbjct: 326 SAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLI 377
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.001
Identities = 33/128 (25%), Positives = 49/128 (38%), Gaps = 30/128 (23%)
Query: 105 KFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFI---SEIA 161
+ GRK + + F + ++ A + L+ RL G+G+G A+P I SE
Sbjct: 76 RIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLG---GALPNLIALTSEAV 132
Query: 162 PPKYRG--------GLNICFQLLITVGILAANLINYGTSRIHPYGWRIS--LGGAA---- 207
P+ RG G+ L +G+LAA WR +GG
Sbjct: 133 GPRLRGTAVSLMYCGVPFGGALASVIGVLAAG----------DAAWRHIFYVGGVGPLLL 182
Query: 208 VPALFLLL 215
VP L L
Sbjct: 183 VPLLMRWL 190
|
Length = 406 |
| >gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 5/94 (5%)
Query: 73 YCKY---DNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLA 129
Y Y + + +AAI+ L + ++FG+K T + IG +L
Sbjct: 248 YFTYVLGNAGLFSVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFL 307
Query: 130 --QNLGMLIAGRLSLGIGVGFGNQAVPLFISEIA 161
+L + + + GIG+G ++++
Sbjct: 308 PPGSLWLFLVLVVLAGIGLGLATLLPWAMLADVV 341
|
This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.003
Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 3/120 (2%)
Query: 105 KFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPK 164
+FGRKP + F++ + L+ N+ +LI R G G F A I++I PP+
Sbjct: 24 RFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83
Query: 165 YRGGLNICFQLLITVGILAANLINYGTSRIHPYGWR-ISLGGAAVPALFLLLGSCIIVET 223
RG I +G L + G GWR L A + +L + ++ ET
Sbjct: 84 ERGVALGLMSAGIALGPLLGPPL--GGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET 141
|
Length = 141 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 518 | |||
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 100.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| PRK10504 | 471 | putative transporter; Provisional | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 100.0 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 100.0 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 100.0 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 100.0 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 100.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 100.0 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 100.0 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.98 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.98 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.98 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.98 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.98 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.97 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.97 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.97 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.97 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.97 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.97 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.97 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.97 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.97 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.97 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.97 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.97 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.97 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.97 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.97 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.96 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.96 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.96 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.96 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.95 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.95 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.95 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.95 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.95 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.95 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.95 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.95 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.94 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.94 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.94 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.94 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.94 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.94 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.94 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.94 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.94 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.94 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.93 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.93 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.92 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.92 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.9 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.89 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.89 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.89 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.88 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.88 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.87 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.86 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.85 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.85 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.84 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.84 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.84 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.84 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.81 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.81 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.8 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.79 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.73 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.71 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.68 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.65 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.61 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.6 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.58 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.55 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.49 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.46 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.46 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.45 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.45 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.43 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.41 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.4 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.4 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.4 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.39 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.39 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.38 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.38 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.37 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.37 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.37 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.36 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.36 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.33 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.33 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.3 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.3 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.3 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.29 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.29 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.29 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.28 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.28 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.28 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.28 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.27 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.27 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.26 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.26 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.26 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.26 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.26 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.26 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.26 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.25 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.24 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.24 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.24 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.22 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.22 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.22 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.22 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.21 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.21 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.21 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.21 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.2 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.19 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.19 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.19 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.18 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.18 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.18 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.17 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.17 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.16 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.16 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.15 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.15 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.14 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.13 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.12 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.11 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.1 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.1 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.08 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.05 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.05 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.05 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.05 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.04 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.04 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.03 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.03 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.03 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.01 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.01 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.99 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.98 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.97 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.97 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.95 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.95 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.95 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.95 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.94 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.94 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.93 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.93 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.92 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.92 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.91 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.9 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.9 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.9 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.87 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.85 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.84 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.82 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.81 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.79 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.74 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.74 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.73 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.71 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.7 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.69 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.67 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.64 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.62 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.62 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.61 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.6 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.6 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.59 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.54 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.47 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.47 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.39 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.38 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.37 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.35 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.34 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.29 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.28 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.27 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.23 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.19 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.18 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.1 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 98.06 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.0 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 98.0 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.96 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 97.95 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.89 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 97.87 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.72 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.72 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.61 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.51 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.5 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 97.42 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.38 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.36 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 97.34 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.17 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.14 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.03 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 96.97 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.92 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.86 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 96.49 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 96.38 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 95.96 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 95.95 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 95.92 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 95.29 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 94.96 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 94.89 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 94.53 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 93.72 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 93.56 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 93.42 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 92.73 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 92.47 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 91.64 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 88.05 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 87.18 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 85.29 | |
| KOG2881 | 294 | consensus Predicted membrane protein [Function unk | 84.28 | |
| PF03547 | 385 | Mem_trans: Membrane transport protein; InterPro: I | 83.31 |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-48 Score=367.93 Aligned_cols=462 Identities=27% Similarity=0.460 Sum_probs=396.5
Q ss_pred CCcchHHHHHHHHHHHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHHHHHHH
Q 035548 16 PAKLTGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVA 95 (518)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~ 95 (518)
+.+++++..+.+..++++.+-+||+.+.+++. .+..++|+++.+.++++.+.+++ .-+...+.+.+++.+|.++|
T Consensus 2 ~~~~t~~L~~~~~~~~~gsf~~Gy~~~~iNap---~~~i~~f~n~t~~~r~g~~~s~~--~~~~lwS~~vs~f~iG~~~G 76 (485)
T KOG0569|consen 2 KPKLTRRLLLAVIVATLGSFQFGYNIGVVNAP---QELIKSFINETLIERYGLPLSDS--TLDLLWSLIVSIFFIGGMIG 76 (485)
T ss_pred CCCccHHHHHHHHHHHHhchhhhhhheecCch---HHHHHHHHHHHHHHhcCCCCChH--HHHHHHHHHHHHHHHHHHHH
Confidence 45678888888999999999999999998765 48888998999988887443332 23345688999999999999
Q ss_pred HHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHh---hccHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchhHHhH
Q 035548 96 CFLASIVCRKFGRKPTIQAASVFFLIGAILNCL---AQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNIC 172 (518)
Q Consensus 96 ~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~---~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~ 172 (518)
+++.|+++||+|||..+.++.++..++.+++.+ .+++++++++|++.|+..|........|+.|..|++.||.....
T Consensus 77 s~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~ 156 (485)
T KOG0569|consen 77 SFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTL 156 (485)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHH
Confidence 999999999999999999999998888877766 47899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccCChhhHHh-cCChhHHHHHHHhhhCCccHHH
Q 035548 173 FQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIE-RGKQEQGLYTLRKIRGVKDVEK 251 (518)
Q Consensus 173 ~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~-~~~~~~a~~~~~~~~~~~~~~~ 251 (518)
.+.+..+|.+++..++.--...+...|++.+.+..+++++.++...++||||+|+.. |++.++|++.++++++.++.++
T Consensus 157 ~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~ 236 (485)
T KOG0569|consen 157 LQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEA 236 (485)
T ss_pred HHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchh
Confidence 999999999999888654444444679999999999999999999999999999998 8999999999999999987666
Q ss_pred HHHHHHHHHHhh---cccccchhhhccc-CChhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCCChHHHHHHHHHHH
Q 035548 252 EYAEICRATEIS---NLIKHPYRSLMKK-SSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQTMGYGSNASLLSAVISGT 327 (518)
Q Consensus 252 ~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 327 (518)
+.++..++.+++ ++++.++++++++ ..+++..+.+.+....++.+.+...+|...++++.|++..++.+.....+.
T Consensus 237 ~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~ 316 (485)
T KOG0569|consen 237 EIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGI 316 (485)
T ss_pred HHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 655544333322 2246678888876 455567778888899999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceee
Q 035548 328 INVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLI 407 (518)
Q Consensus 328 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (518)
..++.++++.++.||+|||++++.+..++.+..+++.......... ..+..+..+...+++...++.+.+|+.+.+
T Consensus 317 v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~----~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi 392 (485)
T KOG0569|consen 317 VNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSF----GSWLSYLCIAAIFLFIISFAIGPGPIPWFI 392 (485)
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHhhhcCCCchhHHH
Confidence 9999999999999999999999999999998888877655433110 012233456778888889999999999999
Q ss_pred ecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhh
Q 035548 408 SSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLISLIFSATMLPETKGIPIDEMVDRAWK 486 (518)
Q Consensus 408 ~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (518)
.+|++|++.|..+.++....+++..++....+..+.+..|...++.+.+.+.+..+..+..+||||+|+..|+.++..+
T Consensus 393 ~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~ 471 (485)
T KOG0569|consen 393 GAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEK 471 (485)
T ss_pred HHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999989999999999999999999999999999999844443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=346.07 Aligned_cols=444 Identities=30% Similarity=0.539 Sum_probs=329.9
Q ss_pred chHHHHHHHHHHHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHHHHHHHHHh
Q 035548 19 LTGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFL 98 (518)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~ 98 (518)
..+.....++.++++.+.++||.+++++.. |.+.++|.+. ...++++++.+.+++.+++.++..+++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---------~~~~~~~~~~~~~~~~s~~~ig~~~~~~~ 74 (479)
T PRK10077 6 NSSYIFSITLVATLGGLLFGYDTAVISGTV--ESLNTVFVAP---------QNLSESAANSLLGFCVASALIGCIIGGAL 74 (479)
T ss_pred cchHHHHHHHHHHHHHHhcCcccceehHhH--HHHHHHhccc---------ccccccCChhHHHHHHHHHHHHHHHHHHH
Confidence 445667777888889999999999998654 6777777432 34556899999999999999999999999
Q ss_pred hHHhhhhhccHHHHHHHHHHHHHHHHHHHhh------------ccHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcc
Q 035548 99 ASIVCRKFGRKPTIQAASVFFLIGAILNCLA------------QNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYR 166 (518)
Q Consensus 99 ~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r 166 (518)
+|+++||+|||++++++.++++++.++++++ ++++.++++|+++|++.|...+...++++|++|+++|
T Consensus 75 ~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r 154 (479)
T PRK10077 75 GGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIR 154 (479)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhh
Confidence 9999999999999999999999998887763 2256788999999999999999999999999999999
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHhhccc------cCCCcchHHHHhhhHHHHHHHHHhhcccCChhhHHhcCChhHHHHHH
Q 035548 167 GGLNICFQLLITVGILAANLINYGTSR------IHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTL 240 (518)
Q Consensus 167 ~~~~~~~~~~~~~G~~i~~~i~~~~~~------~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~a~~~~ 240 (518)
++++++.+.+..+|.++++.++..... ...+|||+.|++.+++.++..+..+++||+|+++..+++.+++++..
T Consensus 155 g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~ 234 (479)
T PRK10077 155 GKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGIL 234 (479)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHH
Confidence 999999999999999999887654432 13469999999988888887777788999999998888888887777
Q ss_pred HhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCCChHHHH
Q 035548 241 RKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQTMGYGSNASLL 320 (518)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 320 (518)
++..+.++.....++..+..+.+.. .....+. ..............+....+++...++.|.+.++.|++......
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~ 310 (479)
T PRK10077 235 RKIMGNTLATQALQEIKHSLDHGRK---TGGKLLM-FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALL 310 (479)
T ss_pred HHHcCChhHHHHHHHHHHHHHHhhh---hhhhhcc-hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHH
Confidence 7765544333222222111111000 0011111 11111122222233333444556677888888889998887778
Q ss_pred HHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccc
Q 035548 321 SAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSW 400 (518)
Q Consensus 321 ~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (518)
.....++..+++.++.++++||+|||+.+..+..+..++.+.+..... .+..........+++..++...+
T Consensus 311 ~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 381 (479)
T PRK10077 311 QTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY---------TQAPGIVALLSMLFYVAAFAMSW 381 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHh---------cCcccHHHHHHHHHHHHHHhccc
Confidence 888888999999999999999999999999888888887776654321 11222233334444555555555
Q ss_pred cccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHH------hccc-hhhHHHHHHHHHHHHHHHHhcccCCC
Q 035548 401 GPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSML------CKMR-WGIFFFFTGWLLISLIFSATMLPETK 473 (518)
Q Consensus 401 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (518)
.|..+.++.|.+|++.|+++.|+.+..++++.++++.+.+.+. +..+ ...+++++..+++..++.+++.||+|
T Consensus 382 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 461 (479)
T PRK10077 382 GPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 461 (479)
T ss_pred cchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCC
Confidence 5777788999999999999999999999999999988876554 3344 33556666666666666777789999
Q ss_pred CCCHHHHHHHHhhc
Q 035548 474 GIPIDEMVDRAWKK 487 (518)
Q Consensus 474 ~~~~~~~~~~~~~~ 487 (518)
+++.+|.+ +.+++
T Consensus 462 ~~~~~~~~-~~~~~ 474 (479)
T PRK10077 462 GKTLEEME-ALWEP 474 (479)
T ss_pred CCCHHHHH-HHHhh
Confidence 99888876 44433
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=353.52 Aligned_cols=441 Identities=19% Similarity=0.234 Sum_probs=315.8
Q ss_pred CCCcchHHHHHHHHHHHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHHHHHH
Q 035548 15 FPAKLTGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIV 94 (518)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i 94 (518)
++.+..+.++..+.+++++.+.++||.+.++.+. |.+.+++. ..+.+.++.+.+++.+.+.+++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~--~~~~~~~~------------~~~~~~~~~~~~~~~~~~~ig~~i 71 (502)
T TIGR00887 6 DTAPFGWQHFRAIVIAGVGFFTDSYDLFCISLVT--KMLGYVYY------------HGKGPLPSSVSAAVNGSASIGTLA 71 (502)
T ss_pred hccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhc------------cCcccchHHHHHHHHHHHHHHHHH
Confidence 4567788889999999999999999999988665 34333221 112356677889999999999999
Q ss_pred HHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhcc------HHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchh
Q 035548 95 ACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQN------LGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGG 168 (518)
Q Consensus 95 ~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~ 168 (518)
+++++|+++||+|||+++.++.++..++.++++++++ ++.++++|+++|++.|...+....+++|++|+++|++
T Consensus 72 g~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~ 151 (502)
T TIGR00887 72 GQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGA 151 (502)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHH
Confidence 9999999999999999999999999999999988876 7899999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHhhccc---------------------cCCCcchHHHHhhhHHHHHHHHHhhcccCChhhH
Q 035548 169 LNICFQLLITVGILAANLINYGTSR---------------------IHPYGWRISLGGAAVPALFLLLGSCIIVETPASL 227 (518)
Q Consensus 169 ~~~~~~~~~~~G~~i~~~i~~~~~~---------------------~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~ 227 (518)
+.++.+.+..+|.++++.++..+.. ..+++||++|.+.++++++..+..+++||+|+|+
T Consensus 152 ~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l 231 (502)
T TIGR00887 152 MMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYT 231 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999999999999888654321 1124899999999998888888888999999999
Q ss_pred HhcCChh-HHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCC---hhHHHHHHHHHHHHHhhchhHHHHh
Q 035548 228 IERGKQE-QGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSS---RPQLICGTFIHMLQQLTGINVVMFY 303 (518)
Q Consensus 228 ~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (518)
..+++.+ ++.+.+++..+.+..++ .++.++.+++++..+.+++++++... ..+..+......+.....++....+
T Consensus 232 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 310 (502)
T TIGR00887 232 ADVAKDVEQAASDMSAVLQVKIEAE-PDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLN 310 (502)
T ss_pred HHhCcchHHHHHHHHHHhccccccC-cccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 9887764 46666666544321111 01111000011111235666665322 1122222222222222334456667
Q ss_pred HHHHHHHcCCCChHHHH------------HHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhc
Q 035548 304 APVLFQTMGYGSNASLL------------SAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFL 371 (518)
Q Consensus 304 ~~~~~~~~g~~~~~~~~------------~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (518)
.|.++++.|++....+. ......++.+++.++.++++||+|||+.+..+..+..++..++.+...
T Consensus 311 ~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~--- 387 (502)
T TIGR00887 311 QKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYN--- 387 (502)
T ss_pred cHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHH---
Confidence 88888888886542211 233445567778899999999999999988887777766665554321
Q ss_pred ccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhcc-----
Q 035548 372 LTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKM----- 446 (518)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----- 446 (518)
..... .......++...+..+..+..+.+..|.+|++.|+++.|+.+..+++++++++.+.+.+.+..
T Consensus 388 ------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 460 (502)
T TIGR00887 388 ------HLSTH-GFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKG 460 (502)
T ss_pred ------hcchh-HHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcccccccc
Confidence 00111 111222222223344555677788899999999999999999999999999999999998843
Q ss_pred -----c-hhhHHHHHHHHHHHHHHHHhcccCCCCCCHHHHH
Q 035548 447 -----R-WGIFFFFTGWLLISLIFSATMLPETKGIPIDEMV 481 (518)
Q Consensus 447 -----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (518)
+ ...++++++++++..+ .++++||+++++++|++
T Consensus 461 ~~~~~~~~~~~~i~~~~~~~~~i-~~~~lpEt~~~~leei~ 500 (502)
T TIGR00887 461 YPTGIWMGHVLEIFALFMFLGIL-FTLLIPETKGKSLEELS 500 (502)
T ss_pred ccccccchHHHHHHHHHHHHHHH-HheEeccCCCCCHHhhh
Confidence 2 2355666666665544 44678999999887765
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-43 Score=351.50 Aligned_cols=423 Identities=16% Similarity=0.179 Sum_probs=319.9
Q ss_pred chHHHHHHHHHHHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHHHHHHHHHh
Q 035548 19 LTGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFL 98 (518)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~ 98 (518)
..+++|.++++++++.+.++++...++.+. |.+.+++ +++..+.+++.++++++.++++++
T Consensus 161 ~~~~~~~l~~i~~l~~~~~g~d~~~is~il--p~i~~~~-----------------gls~~~~g~l~s~~~lG~iiG~li 221 (742)
T TIGR01299 161 HGRFQWALFFVLGLALMADGVEVFVVGFVL--PSAEKDL-----------------CIPDSGKGMLGLIVYLGMMVGAFF 221 (742)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh-----------------CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888888899999999998877554 6666666 889999999999999999999999
Q ss_pred hHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchhHHhHHHHHHH
Q 035548 99 ASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLIT 178 (518)
Q Consensus 99 ~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 178 (518)
+|+++||+|||+++++++++.+++.++++++++++.++++|++.|++.|+..+...+++.|++|+++|++.++++..++.
T Consensus 222 ~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~ 301 (742)
T TIGR01299 222 WGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWM 301 (742)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccc-----------CCCcchHHHHhhhHHHHHHHHHhhcccCChhhHHhcCChhHHHHHHHhhhCCc
Q 035548 179 VGILAANLINYGTSRI-----------HPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTLRKIRGVK 247 (518)
Q Consensus 179 ~G~~i~~~i~~~~~~~-----------~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~a~~~~~~~~~~~ 247 (518)
+|.++++.++..+... ...+||+.+++.++++++.++..+++||+|+|+..+++.+++.+.++++.+.+
T Consensus 302 iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n 381 (742)
T TIGR01299 302 IGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTN 381 (742)
T ss_pred HHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCC
Confidence 9999999876544321 12479999999999888888888899999999999999999999999987665
Q ss_pred cHH----H-HH--HHHHHHHHh------hcccc------------------cchhhhcccCChhHHHHHHHHHHHHHhhc
Q 035548 248 DVE----K-EY--AEICRATEI------SNLIK------------------HPYRSLMKKSSRPQLICGTFIHMLQQLTG 296 (518)
Q Consensus 248 ~~~----~-~~--~~~~~~~~~------~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (518)
... . .. .+.+..... +++.. .+++++++...++++++..++.+.. ...
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~-~~~ 460 (742)
T TIGR01299 382 MRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTL-SFG 460 (742)
T ss_pred CCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHH-HHH
Confidence 321 1 00 001000000 00000 1345566666666666655555444 456
Q ss_pred hhHHHHhHHHHHHHc------------------------------------------CC-----C---------------
Q 035548 297 INVVMFYAPVLFQTM------------------------------------------GY-----G--------------- 314 (518)
Q Consensus 297 ~~~~~~~~~~~~~~~------------------------------------------g~-----~--------------- 314 (518)
++.+..|.|.++++. |+ .
T Consensus 461 yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (742)
T TIGR01299 461 YYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVT 540 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeecc
Confidence 788888988775431 00 0
Q ss_pred -----------------------------------------------------ChHHHHHHHHHHHHHHHHhhhhhhhhh
Q 035548 315 -----------------------------------------------------SNASLLSAVISGTINVASTLVAIVLVD 341 (518)
Q Consensus 315 -----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~g~l~d 341 (518)
.........+..++.+++.++.++++|
T Consensus 541 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~D 620 (742)
T TIGR01299 541 SSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMD 620 (742)
T ss_pred ccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001234456677899999999999999
Q ss_pred ccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHH
Q 035548 342 KAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGY 421 (518)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~ 421 (518)
|+|||+++..+.++.+++.+++.+. ... ...+++.++++++.. +..+..+.+++|.+|++.|++++
T Consensus 621 r~GRr~~l~~~~~lsai~~ll~~~~------------~s~-~~ll~~~~l~g~~~~-~~~~~~~a~~aEl~Pt~~Rgta~ 686 (742)
T TIGR01299 621 KIGRLRMLAGSMVLSCISCFFLSFG------------NSE-SAMIALLCLFGGLSI-AAWNALDVLTVELYPSDKRATAF 686 (742)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHH------------ccH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCHHHHHHHH
Confidence 9999999998888888877766553 122 222222333333333 23345678889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHHHHHHHhcccCCCCCC
Q 035548 422 FFAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLISLIFSATMLPETKGIP 476 (518)
Q Consensus 422 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (518)
|+.+..+.+|++++|.+.+.+.+.....++.+.+++.++++ ++..++||++++.
T Consensus 687 Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~-ll~~~LPET~~~~ 740 (742)
T TIGR01299 687 GFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGG-LLALKLPDTRGQV 740 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHhCCCCcccc
Confidence 99999999999999999998877544445555555544444 4444569988764
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-41 Score=334.87 Aligned_cols=456 Identities=38% Similarity=0.617 Sum_probs=371.1
Q ss_pred CcchHHHHHHHHHHHHhhhhhhcc--cccccccccchhHHHhhhhhhhhhhcccccccccCCCh--hHHHHHHHHHHHHH
Q 035548 17 AKLTGQVLVCSIIAAFGGLMFGYD--IGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDN--QYLQLFTSSLYLAA 92 (518)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~--~~~~~~~s~~~l~~ 92 (518)
...++..........++.+..|++ .+..+++ ....+++.. ..+...+. .+.+|+.++..++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~fg~~g~~g~~s~~---~~~~~~~~~-----------~~~~~~~~~~~~~s~~~s~~~lga 102 (513)
T KOG0254|consen 37 TMISPFVILLALVAALGGLLFGYDGDIGGISGA---LDFLQRFAS-----------LYDLSTGEYSVRQGLLTSILNLGA 102 (513)
T ss_pred ccCceehHHHHHHHHHHHHHhCcccccccchhh---HHHHHhccc-----------ccccccchhHHHHHHHHHHHHHHH
Confidence 345567788888899999999998 4444333 233333311 11112222 56799999999999
Q ss_pred HHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchhHHhH
Q 035548 93 IVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNIC 172 (518)
Q Consensus 93 ~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~ 172 (518)
.++++++|+++|++|||+.++++.+++.++.+++++++|+++++++|+++|+|.|+.......|++|..|++.||...+.
T Consensus 103 ~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~ 182 (513)
T KOG0254|consen 103 LVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSL 182 (513)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccCChhhHHhcCChhHHHHHHHhhhC--CccHH
Q 035548 173 FQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTLRKIRG--VKDVE 250 (518)
Q Consensus 173 ~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~a~~~~~~~~~--~~~~~ 250 (518)
.+....+|..++..++....... ++||..+.+..+++++..+..+++||+|+|+.++++.+++++.++++++ ..+.+
T Consensus 183 ~~l~~~~Gi~~~~~~~~~~~~~~-~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~ 261 (513)
T KOG0254|consen 183 YQLFITIGILLGYCINYGTSKVY-AGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVE 261 (513)
T ss_pred HHHHHHHHHHHHHHHhhhhccCC-ccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchH
Confidence 99999999999987776655432 5899999999999999887888999999999999999999999999998 34455
Q ss_pred HHHHHHHHHHHhh---cccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCCChHHHHHHHHHHH
Q 035548 251 KEYAEICRATEIS---NLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQTMGYGSNASLLSAVISGT 327 (518)
Q Consensus 251 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 327 (518)
.+.++.......+ .+.+..+.+++++...++..+...+..++++++.....+|.+.+++..|.+... .......++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~ 340 (513)
T KOG0254|consen 262 VELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGV 340 (513)
T ss_pred HHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHH
Confidence 5544444111111 111224666666667778888999999999999999999999999999887554 566777788
Q ss_pred HHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceee
Q 035548 328 INVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLI 407 (518)
Q Consensus 328 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (518)
..+++.+++.++.||+|||+.++.+...+.++.++++........... ......+..+...+++...+..+..|+.+.+
T Consensus 341 v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~ 419 (513)
T KOG0254|consen 341 VNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPN-SSKGAGWLAIVFLCLFIFSFAIGWGPVPWVI 419 (513)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCC-cccchhHHHHHHHHHHHHHHhcccccchhhh
Confidence 888899999999999999999999999999999988876543321100 1234467778888888899999999999999
Q ss_pred ecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccc-hhhHHHHHHHHHHHHH-HHHhcccCCCCCCHHHHHHHHh
Q 035548 408 SSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMR-WGIFFFFTGWLLISLI-FSATMLPETKGIPIDEMVDRAW 485 (518)
Q Consensus 408 ~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 485 (518)
.+|.+|.+.|+.+.++....+++..++....+....+..+ ...+..+.+++.+... ..++++||+|+++++|+++...
T Consensus 420 ~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~ 499 (513)
T KOG0254|consen 420 VSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFE 499 (513)
T ss_pred hhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHH
Confidence 9999999999999999999999999998888888877766 6777788888877777 7888999999999999984444
Q ss_pred hcCc
Q 035548 486 KKHW 489 (518)
Q Consensus 486 ~~~~ 489 (518)
+.+.
T Consensus 500 ~~~~ 503 (513)
T KOG0254|consen 500 EGIK 503 (513)
T ss_pred cCCc
Confidence 4433
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=324.58 Aligned_cols=449 Identities=36% Similarity=0.621 Sum_probs=325.6
Q ss_pred CCcchHHHHHHHHHHHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHHHHHHH
Q 035548 16 PAKLTGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVA 95 (518)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~ 95 (518)
..+.+|+.+..++++.++.++.+++...++... +....++.- +.+.+-+.+..+.+++.+++.++..++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~ 87 (481)
T TIGR00879 19 LGSTYWKVALLSLIAAIGGLMFGYDTGVIGGAL--ALPAFEFKF---------TSANSDSYSSSLWGLVVSIFLVGGFIG 87 (481)
T ss_pred CCcccHHHHHHHHHHHHHHHhcccccchhhhhh--hcHHHHHhc---------CCcccCCCChhHHHHHHHHHHHHHHHH
Confidence 344556677777778888899999999887665 444444410 111222467899999999999999999
Q ss_pred HHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhh---ccHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchhHHhH
Q 035548 96 CFLASIVCRKFGRKPTIQAASVFFLIGAILNCLA---QNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNIC 172 (518)
Q Consensus 96 ~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~ 172 (518)
++++|+++||+|||+++.++.+++.++.+++.+. .+++.++++|+++|++.+...+...+++.|++|+++|++++++
T Consensus 88 ~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~ 167 (481)
T TIGR00879 88 ALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSL 167 (481)
T ss_pred HHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhH
Confidence 9999999999999999999999999999988654 3456899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-hhccccCCCcchHHHHhhhHHHHHHHHHhhcccCChhhHHhcCChhHHHHHHHhhhCCccHHH
Q 035548 173 FQLLITVGILAANLIN-YGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTLRKIRGVKDVEK 251 (518)
Q Consensus 173 ~~~~~~~G~~i~~~i~-~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~a~~~~~~~~~~~~~~~ 251 (518)
.+.+..+|..+++.++ .........+||+.|++.++..++..+..+++||+|++...+++.+++.+..++....++.+.
T Consensus 168 ~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (481)
T TIGR00879 168 YQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDK 247 (481)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcH
Confidence 9999999999999997 112223346999999998777777777778899999988777777766665555443322111
Q ss_pred HHHH----HHHH-HHhhcccccchhhhcccC--ChhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCCChHHHHHHHH
Q 035548 252 EYAE----ICRA-TEISNLIKHPYRSLMKKS--SRPQLICGTFIHMLQQLTGINVVMFYAPVLFQTMGYGSNASLLSAVI 324 (518)
Q Consensus 252 ~~~~----~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 324 (518)
+..+ .... ..+.+..+..+.+.++.. ..++.++...+..+..........++.|.+.++.|++..+.+.....
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 327 (481)
T TIGR00879 248 ELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSII 327 (481)
T ss_pred HHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHH
Confidence 1111 0000 001111112233333322 23445555555555555555667788899989999999888899999
Q ss_pred HHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccc
Q 035548 325 SGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPIC 404 (518)
Q Consensus 325 ~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (518)
..++.+++.++.+++.||++||+.+..+..+..++.+++.+...... ...........+....++..+++.+..+..
T Consensus 328 ~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (481)
T TIGR00879 328 VGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFV---TGSSKSSGNVAIVFILLFIAFFAMGWGPVP 404 (481)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhccc---CCcccchhHHHHHHHHHHHHHHHccccCee
Confidence 99999999999999999999999988887777766666653221100 000001133344444555555666666777
Q ss_pred eeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchh-hHHHHHHHHHHHHHHHHhcccCCCCCCHH
Q 035548 405 WLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWG-IFFFFTGWLLISLIFSATMLPETKGIPID 478 (518)
Q Consensus 405 ~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (518)
..++.|.+|++.|+++.++.+...++++++++.+.+.+.+..++. .+++.++++++.+++.+++.||+++++.+
T Consensus 405 ~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~ 479 (481)
T TIGR00879 405 WVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLE 479 (481)
T ss_pred hhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChh
Confidence 777899999999999999999999999999999999999887754 45566666666666666777777766543
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=320.04 Aligned_cols=400 Identities=16% Similarity=0.195 Sum_probs=272.4
Q ss_pred HHHHHHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCCh--hHHHH--HHHHHHHHHHHHHHhhHH
Q 035548 26 CSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDN--QYLQL--FTSSLYLAAIVACFLASI 101 (518)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~--~~~~~--~~s~~~l~~~i~~~~~G~ 101 (518)
....+.++.++++||..+++... |.+.++|+|+ .++ ...+. +.++.++++.++++++|+
T Consensus 17 ~~~~~~~g~~~~~~d~~~~~~~~--~~i~~~~~~~---------------~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~ 79 (490)
T PRK10642 17 AITAASLGNAMEWFDFGVYGFVA--YALGKVFFPG---------------ADPSVQMIAALATFSVPFLIRPLGGLFFGM 79 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhCCC---------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666788999999999987554 6777777432 111 11222 257888999999999999
Q ss_pred hhhhhccHHHHHHHHHHHHHHHHHHHhhccHHH--------HHHHHHHhhhhhhcccchhhhHHHhcCCCCcchhHHhHH
Q 035548 102 VCRKFGRKPTIQAASVFFLIGAILNCLAQNLGM--------LIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICF 173 (518)
Q Consensus 102 l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~ 173 (518)
++||+|||+++.+++++++++++++++++|+++ ++++|+++|++.|+.++...+++.|++|+++|+++.++.
T Consensus 80 l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~ 159 (490)
T PRK10642 80 LGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWL 159 (490)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHH
Confidence 999999999999999999999999999999875 889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccc------cCCCcchHHHHhhhHHHHHHHHHhhcccCChhhHHhcCChhHHHHHHHhhhCCc
Q 035548 174 QLLITVGILAANLINYGTSR------IHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTLRKIRGVK 247 (518)
Q Consensus 174 ~~~~~~G~~i~~~i~~~~~~------~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~a~~~~~~~~~~~ 247 (518)
..+..+|..+++.+...+.. ...+|||++|++.++++++.+++...+||+|+|...+++.++..
T Consensus 160 ~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~---------- 229 (490)
T PRK10642 160 DFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGD---------- 229 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhc----------
Confidence 98888888888866433221 12479999999988777766666677999998753322111100
Q ss_pred cHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHH-HcCCCChHHHHHHHHHH
Q 035548 248 DVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQ-TMGYGSNASLLSAVISG 326 (518)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~ 326 (518)
.+...++++.++++++++ .++......... +.....++....|.|.+++ .+|++..+.........
T Consensus 230 -----------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~ 296 (490)
T PRK10642 230 -----------REGLQDGPKVSFKEIATK-HWRSLLTCIGLV-IATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIM 296 (490)
T ss_pred -----------cccccccccCCHHHHHHH-hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 000001112345555543 222323222222 2223345566778888885 56888887777778888
Q ss_pred HHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhcccccccee
Q 035548 327 TINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWL 406 (518)
Q Consensus 327 ~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (518)
++.+++.++.|+++||+|||+.+..+.+...+....+.... ........+....+.+.+.+... .....
T Consensus 297 ~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~~~~~-g~~~~ 365 (490)
T PRK10642 297 IGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILI----------NSNVIGLIFAGLLMLAVILNCFT-GVMAS 365 (490)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH----------hCCCHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 88999999999999999999988766654333332221111 11112222222222222222222 22335
Q ss_pred eecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccc--hhhHHHHHHHHHHHHHHHHhcccCCCCCCH
Q 035548 407 ISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMR--WGIFFFFTGWLLISLIFSATMLPETKGIPI 477 (518)
Q Consensus 407 ~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (518)
+..|.+|++.|+++.|+.+.....++.++|.+.+.+.+..+ +...++....+++ .++..++.||++++..
T Consensus 366 ~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i-~~~~~~~~pes~~~~~ 437 (490)
T PRK10642 366 TLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVI-GLITGVTMKETANRPL 437 (490)
T ss_pred HHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH-HHHHHHHhccccCCCC
Confidence 56789999999999998777788888999999999887654 2233333333333 3334445688766543
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=365.32 Aligned_cols=439 Identities=33% Similarity=0.646 Sum_probs=345.2
Q ss_pred HHHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhcc
Q 035548 29 IAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGR 108 (518)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Gr 108 (518)
++.++.+.+|||.+.++...........+..+. .+.+.+.++.+.+++.++.++|..+|+++.|.++||+||
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GR 75 (451)
T PF00083_consen 4 IASLGGFLFGYDLGLIGSFASLLGFLQFFGWSS--------SESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGR 75 (451)
T ss_pred eeHHHHHHHHHHHHHHhhHHhhhhhhhcccccc--------ccccccchHHHHHHHHHHHHhhhcccccccccccccccc
Confidence 456677999999999876664444333331110 111112256788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc---cHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHH
Q 035548 109 KPTIQAASVFFLIGAILNCLAQ---NLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAAN 185 (518)
Q Consensus 109 r~~l~~~~~l~~~~~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~ 185 (518)
|+.+.++.++..+++++.++++ +++.+.++|+++|++.|+..+....++.|..|+++|++..++.+.+..+|.+++.
T Consensus 76 k~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~ 155 (451)
T PF00083_consen 76 KPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLAS 155 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccCC-CcchHHHHhhhHHHHHHHHHhhcccCChhhHHhcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhc
Q 035548 186 LINYGTSRIHP-YGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISN 264 (518)
Q Consensus 186 ~i~~~~~~~~~-~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (518)
.++.......+ .+||..+.+.++++++..+..+++||||+|+..+++.++|++.+++.++.+..+++.++..++.++.+
T Consensus 156 ~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 235 (451)
T PF00083_consen 156 LIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQ 235 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccceeccccccccccccccccccccccccccccccccccccc
Confidence 88655533332 56999999999999888888899999999999999999999999997766555555444444333333
Q ss_pred ccccchhhhcccCC-hhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 035548 265 LIKHPYRSLMKKSS-RPQLICGTFIHMLQQLTGINVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKA 343 (518)
Q Consensus 265 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 343 (518)
+.+.+++++++.+. +++......+..+....+......|.+.+++..+.+.. ........+..+++.+++.++.||+
T Consensus 236 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (451)
T PF00083_consen 236 ESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF 313 (451)
T ss_pred ccceeeeeccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc
Confidence 33356777776644 45566666666666666667777888888888877766 3444556677778888888999999
Q ss_pred CChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHH
Q 035548 344 GRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFF 423 (518)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~ 423 (518)
|||+++..+..++.++.+.++...... ..+ +.......+....++...+..++.+..+.+..|.+|++.|+++.|+
T Consensus 314 GRr~~~i~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~ 389 (451)
T PF00083_consen 314 GRRKLLIIGLLLMAICSLILGIIFFLG--VSS--SSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGL 389 (451)
T ss_pred ccccccccccccccccccccccccccc--ccc--ccccccccceeeeecccccccccccccccccccccccccccccccc
Confidence 999999988888777777665111000 000 0011334444555555666767778888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHhccc-hhhHHHHHHHHHHHHHHHHhcccCCCCCCHHHHH
Q 035548 424 AVSTNMVFTFVIAQAFLSMLCKMR-WGIFFFFTGWLLISLIFSATMLPETKGIPIDEMV 481 (518)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (518)
....+++++++.+.+...+.+..+ ...+.++++++.+..++.++++||||+++++|++
T Consensus 390 ~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~ 448 (451)
T PF00083_consen 390 SYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQ 448 (451)
T ss_pred ccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHH
Confidence 999999999999999988888877 7788888888888888899999999999999998
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=300.58 Aligned_cols=395 Identities=17% Similarity=0.169 Sum_probs=262.0
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHH---HHHHHH
Q 035548 11 NGKDFPAKLTGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYL---QLFTSS 87 (518)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~---~~~~s~ 87 (518)
.|.+-....+++++..+..+.++.+++++|...++.+. |.+.++|+|. +.+..+. +.+.+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~l~~~~~~~--------------~~~~~~~~~~~~~~~~ 71 (432)
T PRK10406 8 ADSKLTSSDTRRRIWAIVGASSGNLVEWFDFYVYSFCS--LYFAHIFFPS--------------GNTTTQLLQTAGVFAA 71 (432)
T ss_pred cccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhCCC--------------CCchHHHHHHHHHHHH
Confidence 33444445556666677777888999999999987554 6777777432 2334433 344455
Q ss_pred HHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHH--------HHHHHHHHhhhhhhcccchhhhHHHh
Q 035548 88 LYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLG--------MLIAGRLSLGIGVGFGNQAVPLFISE 159 (518)
Q Consensus 88 ~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~ 159 (518)
.+++..++++++|+++||+|||+++..+.++++++++++++++++. .++++|+++|++.|+.++...+++.|
T Consensus 72 ~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e 151 (432)
T PRK10406 72 GFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSE 151 (432)
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHH
Confidence 5566669999999999999999999999999999999999998874 58899999999999999999999999
Q ss_pred cCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccc------cCCCcchHHHHhhhHHHHHHHHHhhcccCChhhHHhcCCh
Q 035548 160 IAPPKYRGGLNICFQLLITVGILAANLINYGTSR------IHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQ 233 (518)
Q Consensus 160 ~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~------~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~ 233 (518)
++|+++|+++.++.+.+...|.++++.+...+.. ...+|||++|++.++++++.......+||+|++..+
T Consensus 152 ~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~---- 227 (432)
T PRK10406 152 VAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETR---- 227 (432)
T ss_pred hCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHh----
Confidence 9999999999999998888888888876543321 124699999999888887766666667777642100
Q ss_pred hHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHH-HcC
Q 035548 234 EQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQ-TMG 312 (518)
Q Consensus 234 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g 312 (518)
+ .+++.+++++++++ +.+.......+.....++....|.|.+++ +.|
T Consensus 228 ---------------------------~--~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g 275 (432)
T PRK10406 228 ---------------------------A--LKEAGSLKGLWRNR---RAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAG 275 (432)
T ss_pred ---------------------------h--hcccccHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 0 00112345555422 22222222222222334556677787775 569
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHH
Q 035548 313 YGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVF 392 (518)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (518)
++..+.+.......+...++.++.|+++||++||+.+.....+..+....+..... ........+....+.
T Consensus 276 ~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 346 (432)
T PRK10406 276 MHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQ---------NVSSPYAAFGLVMCA 346 (432)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH---------cCCcHHHHHHHHHHH
Confidence 98888888888888888888999999999999998876655543333222211110 111122211111111
Q ss_pred HHhhhccccccceeeecccCChhhhhhHHHHHHHHHHH-HHHHHHHHhHHHHhccc-hhhHHHHHHHHHHHHHHHHhc
Q 035548 393 VAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMV-FTFVIAQAFLSMLCKMR-WGIFFFFTGWLLISLIFSATM 468 (518)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 468 (518)
....+. ..+..+.+.+|.+|++.|+++.|+.+..++. .+...|.+.+. .+..+ +...+++.++..+.+.+..++
T Consensus 347 ~~~~~~-~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~-l~~~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 347 LLIVSF-YTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALS-LKSIGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred HHHHHH-HHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHH-HHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 111111 1123456678999999999999999988765 34456676664 45555 433334443433333333333
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=285.71 Aligned_cols=405 Identities=14% Similarity=0.080 Sum_probs=290.8
Q ss_pred cchHHHHHHHHHHHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHHHHHHHHH
Q 035548 18 KLTGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACF 97 (518)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~ 97 (518)
..++.++.+...+.++.....+..-.++ ..+|.+.++. ++|.+|+|++.++++++|.++-+
T Consensus 22 ~y~~~r~qif~~~fiGYa~fYl~RknF~--~a~p~l~e~~-----------------~lsk~~lG~i~s~f~i~YG~sKf 82 (448)
T COG2271 22 TYKRWRIQIFLSIFIGYAAFYLTRKNFN--LAMPALIEDG-----------------GLSKTQLGILGSAFSITYGVSKF 82 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHh--hccHHHHHhc-----------------CCCHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777888877777776665 4457777776 79999999999999999999999
Q ss_pred hhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchhHHhHHHHHH
Q 035548 98 LASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLI 177 (518)
Q Consensus 98 ~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~ 177 (518)
+.|.++||.+.|+.+..++++.++.+++++++++.+.+.+..+++|..+|...|.+...+..|++++|||+..++++++.
T Consensus 83 ~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~sh 162 (448)
T COG2271 83 VMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSH 162 (448)
T ss_pred HhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHH-HHHHhhcccCChhhHHhcCChhHHHHHHHhhhCCccHHHHHHHH
Q 035548 178 TVGILAANLINYGTSRIHPYGWRISLGGAAVPALF-LLLGSCIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAEI 256 (518)
Q Consensus 178 ~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 256 (518)
++|..+.|++........+.+||..|++.++++++ .++.++..+++|+.. +-++.++..++.
T Consensus 163 NiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~-----------------GLP~ie~~~~d~ 225 (448)
T COG2271 163 NIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSE-----------------GLPPIEEYRGDP 225 (448)
T ss_pred hcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCcccc-----------------CCCCHHHhhcCc
Confidence 99999999887222223335899999999999888 455556678877421 111111111111
Q ss_pred HHH-HHhhcccccchhhhc-ccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHHH-cCCCChHHHHHHHHHHHHHHHHh
Q 035548 257 CRA-TEISNLIKHPYRSLM-KKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQT-MGYGSNASLLSAVISGTINVAST 333 (518)
Q Consensus 257 ~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~ 333 (518)
.+. .++++.+..+.++++ +...+++.++...+........-+.+..|.|.|+.+ .|++..++....+.+-.++++|+
T Consensus 226 ~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~ 305 (448)
T COG2271 226 LEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGT 305 (448)
T ss_pred hhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHH
Confidence 111 111111113344443 444444555555555555555667888999988854 59999999999999999999999
Q ss_pred hhhhhhhhcc--CChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeeccc
Q 035548 334 LVAIVLVDKA--GRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEI 411 (518)
Q Consensus 334 ~~~g~l~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (518)
++.||++||+ |||....+.+.+.....++..... ++.+.++...++.+.+ ++..+..-+....+.|.
T Consensus 306 Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~----------~~~~~~l~~~~l~~iG-f~IyGPqmLiGl~a~e~ 374 (448)
T COG2271 306 LLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLA----------PNGSYLLDAILLFIIG-FLIYGPQMLIGLAAAEF 374 (448)
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcC----------CCccHHHHHHHHHHHH-HHHhhHHHHHHHHHhcc
Confidence 9999999996 566655443333322222222211 2222233222222222 22222112333567899
Q ss_pred CChhhhhhHHHHHHHHHHH-HHHHHHHHhHHHHhccchh-hHHHHHHHHHHHHHHHHhcc
Q 035548 412 YPLETRNAGYFFAVSTNMV-FTFVIAQAFLSMLCKMRWG-IFFFFTGWLLISLIFSATML 469 (518)
Q Consensus 412 ~p~~~r~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 469 (518)
.|++..|++.|+...++++ |+..+....|.+.|.+||. .+..+.+.++++.+++....
T Consensus 375 ~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~ 434 (448)
T COG2271 375 VPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVW 434 (448)
T ss_pred ccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 9999999999999988865 44444444444444444433
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=278.90 Aligned_cols=375 Identities=16% Similarity=0.206 Sum_probs=286.8
Q ss_pred HHHHHHHHHHHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHHHHHHHHHhhH
Q 035548 21 GQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLAS 100 (518)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~G 100 (518)
+..+..++..+++.|..+.+..+...++ |++.+|| |+|..+.|++.++|.+++.+++|+..
T Consensus 9 ~~~~~~l~aLa~~~F~igttEfv~~gLL--p~iA~dl-----------------~vs~~~aG~lis~yAl~~ai~ap~l~ 69 (394)
T COG2814 9 KPMWLALLALALAAFAIGTTEFVPVGLL--PPIAADL-----------------GVSEGAAGQLITAYALGVALGAPLLA 69 (394)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHhch--HHHHHHc-----------------CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777788888888877665 7888888 99999999999999999999999999
Q ss_pred HhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchhHHhHHHHHHHHH
Q 035548 101 IVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVG 180 (518)
Q Consensus 101 ~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 180 (518)
.+.||+.||++++..+.++.++++++++++||+.++++|++.|++.|.+++...++..+..|+++|++++++...+..++
T Consensus 70 ~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA 149 (394)
T COG2814 70 LLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLA 149 (394)
T ss_pred HHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHH-hhcccCChhhHHhcCChhHHHHHHHhhhCCccHHHHHHHHHHH
Q 035548 181 ILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLG-SCIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRA 259 (518)
Q Consensus 181 ~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 259 (518)
.++|.+++.++.+. +|||..|++.++++++..+. +..+| |+.
T Consensus 150 ~v~GvPLGt~ig~~--~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~--------------------------------- 192 (394)
T COG2814 150 TVLGVPLGTFLGQL--FGWRATFLAIAVLALLALLLLWKLLP--PSE--------------------------------- 192 (394)
T ss_pred HHHhccHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHhCC--Ccc---------------------------------
Confidence 99999998776543 69999999999998886554 45567 210
Q ss_pred HHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhh
Q 035548 260 TEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVL 339 (518)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l 339 (518)
..++++.+.++.++..++++.+.......+.....+..+.+..|++.+..|++....++....++++.++|+.++|++
T Consensus 193 --~~~~~~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl 270 (394)
T COG2814 193 --ISGSLPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRL 270 (394)
T ss_pred --CCCCCCcchhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 001112233333333444444444444444444444455555666666779999999999999999999999999999
Q ss_pred hhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhh
Q 035548 340 VDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNA 419 (518)
Q Consensus 340 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~ 419 (518)
.|| +.|+.+.....+..+..+.+.+. ..+.+.......++++....... .......+.. ++.+..
T Consensus 271 ~dr-~~~~~l~~~~~l~a~~~l~l~~~------------~~~~~~~~~~~~~wg~a~~~~~~-~~~~~~a~~~-p~~~~~ 335 (394)
T COG2814 271 ADR-GPRRALIAALLLLALALLALTFT------------GASPALALALLFLWGFAFSPALQ-GLQTRLARLA-PDAADL 335 (394)
T ss_pred ccc-cchhHHHHHHHHHHHHHHHHHHh------------cchHHHHHHHHHHHHHHhhhhhh-HHHHHhcccC-CCchHH
Confidence 999 88888877767777666665553 23333333333333333222211 1123334433 466799
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHHHHHHHhc
Q 035548 420 GYFFAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLISLIFSATM 468 (518)
Q Consensus 420 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (518)
+.++.....++|..+|..+.|.++|+.++......++...+.++...+.
T Consensus 336 a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~ 384 (394)
T COG2814 336 AGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALL 384 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988776666666666655555544
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=310.10 Aligned_cols=384 Identities=19% Similarity=0.302 Sum_probs=281.3
Q ss_pred cccccCCC---hhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhh
Q 035548 70 EDNYCKYD---NQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGV 146 (518)
Q Consensus 70 ~~~~~~~s---~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 146 (518)
..+|+|++ ..+.+++.+++.++..++++++|+++||+|||++++++.++.+++.++++++++++.+++.|++.|++.
T Consensus 115 i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~ 194 (505)
T TIGR00898 115 IVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGI 194 (505)
T ss_pred EEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhc
Confidence 45566888 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccCChhh
Q 035548 147 GFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPAS 226 (518)
Q Consensus 147 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~ 226 (518)
+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+. +||+.|++.+++.++..+..+++||+|+|
T Consensus 195 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~-----~wr~~~~~~~i~~~~~~~~~~~~~esp~~ 269 (505)
T TIGR00898 195 GGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP-----DWRWLQLAVSLPTFLFFLLSWFVPESPRW 269 (505)
T ss_pred cchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHHHhcCCChHH
Confidence 9999999999999999999999999999999999999999976553 49999999999888877777889999999
Q ss_pred HHhcCChhHHHHHHHhhhCCccHH--HHHHHHH-HHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHh
Q 035548 227 LIERGKQEQGLYTLRKIRGVKDVE--KEYAEIC-RATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFY 303 (518)
Q Consensus 227 ~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (518)
+..+++.+++.+.+++..+.+... .+..+.. ++...+++++.+++++++++..+...+...+.++... ...+.
T Consensus 270 l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~ 345 (505)
T TIGR00898 270 LISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTA----FSYYG 345 (505)
T ss_pred HHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHH----HHHHH
Confidence 999999999988887765433211 1111111 1111111123456677766555544444333333221 11222
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhH
Q 035548 304 APVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAK 383 (518)
Q Consensus 304 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (518)
.+......+.+. .......++..+++.++.+++.||+|||+.+..+.++.+++.+++... +....+
T Consensus 346 ~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~-----------~~~~~~ 411 (505)
T TIGR00898 346 LVLDLGNLGGNI---YLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFV-----------PVDLYF 411 (505)
T ss_pred HhccccccCCCh---HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHc-----------CCCchH
Confidence 233334444442 344456678888999999999999999999988887777776665542 122222
Q ss_pred HHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHHHH
Q 035548 384 VVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLISLI 463 (518)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (518)
.......+..++... ..+..+.+..|.+|++.|+++.|+.+..+.+|++++|.+.+ +.+......+++++++.+++++
T Consensus 412 ~~~~~~~~~~~~~~~-~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~~~~~~~~~~~~~~~~~~ 489 (505)
T TIGR00898 412 LRTALAVLGKFGITS-AFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEKWLFLPLVLFGGLALLAGI 489 (505)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHHHHhhHHHHHHHHHHHHHH
Confidence 222333333333222 22455678899999999999999999999999999999998 4443334555665555555544
Q ss_pred HHHhcccCCCCCCHHH
Q 035548 464 FSATMLPETKGIPIDE 479 (518)
Q Consensus 464 ~~~~~~~~~~~~~~~~ 479 (518)
. .+++||+++++++|
T Consensus 490 ~-~~~lpet~~~~l~~ 504 (505)
T TIGR00898 490 L-TLFLPETKGVPLPE 504 (505)
T ss_pred H-HHcCcCCCCCCCCC
Confidence 4 45678988876643
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=293.21 Aligned_cols=389 Identities=12% Similarity=0.048 Sum_probs=267.6
Q ss_pred HHHHHHHHHHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHHHHHHHHHhhHH
Q 035548 22 QVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLASI 101 (518)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~G~ 101 (518)
++|....++.++.+++++|...++... |.+.+++ |++..+.|++.+++++++.+++++.|+
T Consensus 5 ~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~l~~~~-----------------~~s~~~~g~~~s~~~~~~~~~~~~~g~ 65 (412)
T TIGR02332 5 LFRRLIIFLFILFIFSFLDRINIGFAG--LTMGKDL-----------------GLSATMFGLAATLFYAAYVICGIPSNI 65 (412)
T ss_pred ehhHHHHHHHHHHHHHHhhhhhHHHHH--HhhHhhc-----------------CCCHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 345566667777788899998887554 5555555 999999999999999999999999999
Q ss_pred hhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchhHHhHHHHHHHHHH
Q 035548 102 VCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGI 181 (518)
Q Consensus 102 l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~ 181 (518)
++||+|||+++..++++++++++++++++|++.+++.|+++|++.+...+...+++.|++|+++|++++++++.+.++|.
T Consensus 66 l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~ 145 (412)
T TIGR02332 66 MLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTM 145 (412)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccc----CCCcchHHHHhhhHHHHHH-HHHhhcccCChhhHHhcCChhHHHHHHHhhhCCccHHHHHHHH
Q 035548 182 LAANLINYGTSRI----HPYGWRISLGGAAVPALFL-LLGSCIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAEI 256 (518)
Q Consensus 182 ~i~~~i~~~~~~~----~~~~wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 256 (518)
++++.+++.+... +..|||+.|++.++++++. .+.++++||+|+.... -..++.+...+..+.... + .++
T Consensus 146 ~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~-l~~~~~~~~~~~~~~~~~-~--~~~- 220 (412)
T TIGR02332 146 ALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKW-LDEEDKKALKEMIDNDQL-T--LEQ- 220 (412)
T ss_pred HHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCC-CCHHHHHHHHHHHHhccc-c--ccc-
Confidence 9999998765432 2369999999988887764 4455667888842100 001111111111100000 0 000
Q ss_pred HHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHc--CCCChHHHHHHHHHHHHHHHHhh
Q 035548 257 CRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQTM--GYGSNASLLSAVISGTINVASTL 334 (518)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~ 334 (518)
..+..++.+...++.++....+. ++...+..++....+..+..|.|.++++. |++..+++.......++.+++.+
T Consensus 221 --~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l 297 (412)
T TIGR02332 221 --PEGAFAHAAMPQRSMLREIFTPA-IMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMI 297 (412)
T ss_pred --cccccccccccHHHHHHHhcChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHH
Confidence 00000000011111111112222 23333333444445667788999999874 66778889999999999999999
Q ss_pred hhhhhhhccCChHHH-HHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCC
Q 035548 335 VAIVLVDKAGRKILL-VQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYP 413 (518)
Q Consensus 335 ~~g~l~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 413 (518)
+.++++||+++|+.. ........++. .+... .... ...+....+...+... ..+..+....|.+|
T Consensus 298 ~~g~l~dr~~~r~~~~~~~~~~~~~~~-~~~~~-----------~~~~-~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~ 363 (412)
T TIGR02332 298 WWSRHSDRLKERKHHTALPYLFAAAGW-LLASA-----------TDHN-LIQLLGIIMASMGSFS-AMAIFWTTPDQSIS 363 (412)
T ss_pred HHHHHhcccCccHHHHHHHHHHHHHHH-HHHHh-----------cCCH-HHHHHHHHHHHHHhhh-hhhHHHhhcccccc
Confidence 999999999977653 33322222222 11111 1111 2122122222222211 12233345567899
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccc-hhhH
Q 035548 414 LETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMR-WGIF 451 (518)
Q Consensus 414 ~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 451 (518)
++.|++++|+.+..++++++++|.+.|.+.|..+ +...
T Consensus 364 ~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~ 402 (412)
T TIGR02332 364 LQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSG 402 (412)
T ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchh
Confidence 9999999999999999999999999999999876 4433
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=290.07 Aligned_cols=362 Identities=16% Similarity=0.153 Sum_probs=270.5
Q ss_pred HHHHHHHHHHHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHHHHHHHHHhhH
Q 035548 21 GQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLAS 100 (518)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~G 100 (518)
+++|....++.+..+.+++|....+... |.+.+++ |+++.+.+++.+++.++..+++++.|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-----------------~~s~~~~g~~~~~~~~~~~~~~~~~g 71 (406)
T PRK11551 11 SRLALTIGLCFLVALLEGLDLQSAGVAA--PRMAQEF-----------------GLDVAQMGWAFSAGILGLLPGALLGG 71 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh-----------------CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888899999998877544 6777666 89999999999999999999999999
Q ss_pred HhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchhHHhHHHHHHHHH
Q 035548 101 IVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVG 180 (518)
Q Consensus 101 ~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 180 (518)
+++||+|||+++..+.++..++.+++.++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|
T Consensus 72 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 151 (406)
T PRK11551 72 RLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFG 151 (406)
T ss_pred HHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccCCCcchHHHHhhhHHHHHHH-HHhhcccCChhhHHhcCChhHHHHHHHhhhCCccHHHHHHHHHHH
Q 035548 181 ILAANLINYGTSRIHPYGWRISLGGAAVPALFLL-LGSCIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRA 259 (518)
Q Consensus 181 ~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~-~~~~~~~e~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 259 (518)
..+++.++..+. +..+||+.|++.++..++.. +...++||+|++..++.+.++.
T Consensus 152 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----------------------- 206 (406)
T PRK11551 152 GALASVIGVLAA--GDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQR----------------------- 206 (406)
T ss_pred HHHHHHHHHHHc--cccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhh-----------------------
Confidence 999999875543 33689999998877655544 3455678877543221110000
Q ss_pred HHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhh
Q 035548 260 TEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVL 339 (518)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l 339 (518)
+...+..++....++... .....+...........+.|.++++.|++..+.+.......++.+++.++.|++
T Consensus 207 -------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l 278 (406)
T PRK11551 207 -------APVLRALFGEGRATATLL-LWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGAL 278 (406)
T ss_pred -------hhhHHHHhhhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 000011111111111111 111122222234456667888888899999999999999999999999999999
Q ss_pred hhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhh
Q 035548 340 VDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNA 419 (518)
Q Consensus 340 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~ 419 (518)
.||++||+.+..+.....++.+.+... ...+.......+.+.+. .+..+....+..|.+|++.|++
T Consensus 279 ~dr~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~p~~~~g~ 344 (406)
T PRK11551 279 MDRLRPRRVVLLIYAGILASLAALAAA-------------PSFAGMLLAGFAAGLFV-VGGQSVLYALAPLFYPTQVRGT 344 (406)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhc-------------CcHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHcchhhhhh
Confidence 999999998877555554444433221 12222222222222222 2233455567889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhccch
Q 035548 420 GYFFAVSTNMVFTFVIAQAFLSMLCKMRW 448 (518)
Q Consensus 420 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (518)
+.|+.+....++..++|.+.|.+.+..+.
T Consensus 345 ~~g~~~~~~~~g~~~g~~~~g~l~~~~~~ 373 (406)
T PRK11551 345 GVGAAVAVGRLGSMAGPLLAGQLLALGRS 373 (406)
T ss_pred hhhHHHHhhhHHHHHHhhhHhhhhccCCc
Confidence 99999999999999999999999987653
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=287.30 Aligned_cols=391 Identities=15% Similarity=0.127 Sum_probs=257.9
Q ss_pred HHHHHHHHHHHhhhhhhcccccccccccchh-HHHhhhhhhhhhhcccccccccCCChhHHHHHH-----HHHHHHHHHH
Q 035548 22 QVLVCSIIAAFGGLMFGYDIGISAGVTTMDD-FLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFT-----SSLYLAAIVA 95 (518)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~-----s~~~l~~~i~ 95 (518)
+++.......++.++++||...++.+. |. +.++|+| +.++. .+++. ++.+++..++
T Consensus 19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~~---------------~~~~~-~~~~~~~~~~~~~~~~~~~g 80 (438)
T PRK09952 19 RARRAALGSFAGAVVDWYDFLLYGITA--ALVFNREFFP---------------QVSPA-MGTLAAFATFGVGFLFRPLG 80 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhcCC---------------CCCcH-HHHHHHHHHHHHHHHHHhhH
Confidence 344566777778899999999877543 32 3344433 23333 34443 4556778899
Q ss_pred HHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHH--------HHHHHHHHhhhhhhcccchhhhHHHhcCCCCcch
Q 035548 96 CFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLG--------MLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRG 167 (518)
Q Consensus 96 ~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~ 167 (518)
+++.|+++||+|||+++..+.+++++++++++++++++ .++++|+++|++.|+.++....++.|++|+++|+
T Consensus 81 ~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg 160 (438)
T PRK09952 81 GVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKA 160 (438)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCc
Confidence 99999999999999999999999999999999999987 5888999999999999999999999999999999
Q ss_pred hHHhHHHHHHHHHHHHHHHHHhhcccc------CCCcchHHHHhhhHHHHHHHHHhhcccCChhhHHhcCChhHHHHHHH
Q 035548 168 GLNICFQLLITVGILAANLINYGTSRI------HPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTLR 241 (518)
Q Consensus 168 ~~~~~~~~~~~~G~~i~~~i~~~~~~~------~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~a~~~~~ 241 (518)
+..+..+.+..+|.+++..+...+... ..+|||++|++.+++.++........||+|++...+++.++
T Consensus 161 ~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~------ 234 (438)
T PRK09952 161 FYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAA------ 234 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhccc------
Confidence 999999999999999987765443221 23699999999888776665555667888765322111000
Q ss_pred hhhCCccHHHHHHHHHHHHHhhcccccchhh-hcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHH-HHcCCCChHHH
Q 035548 242 KIRGVKDVEKEYAEICRATEISNLIKHPYRS-LMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLF-QTMGYGSNASL 319 (518)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~ 319 (518)
.+++.+..+ +++++ +.+.......+......+....|.|.++ +..|++.....
T Consensus 235 ----------------------~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~ 289 (438)
T PRK09952 235 ----------------------AKKRIPVIEALLRHP---GAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFL 289 (438)
T ss_pred ----------------------ccccCCHHHHHHHch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 000111111 22222 2222222222222223445556677666 45688776655
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhcc
Q 035548 320 LSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWS 399 (518)
Q Consensus 320 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (518)
......++..+++.++.|+++||++||+.+..+.++..++...+..... .....+..+....+...+.+..
T Consensus 290 ~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~~~~~ 360 (438)
T PRK09952 290 NIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALE---------AQSIFWIVFFSIMLANIAHDMV 360 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH---------cCChHHHHHHHHHHHHHHHHHH
Confidence 5566667778888999999999999999887766554443332222110 1112222222222222332222
Q ss_pred ccccceeeecccCChhhhhhHHHHHHHHHH-HHHHHHHHHhHHHHhccc--hhhHHHHHHHHHHHHHHHHhcccC
Q 035548 400 WGPICWLISSEIYPLETRNAGYFFAVSTNM-VFTFVIAQAFLSMLCKMR--WGIFFFFTGWLLISLIFSATMLPE 471 (518)
Q Consensus 400 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 471 (518)
.+..+.+..|.+|++.|+++.++.+..+. +++.++|.+.+.+.+..+ +.....+.+++.+...+..+..++
T Consensus 361 -~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~ 434 (438)
T PRK09952 361 -VCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKD 434 (438)
T ss_pred -HHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHccc
Confidence 23456778999999999999999776654 889999999999988543 333333344444444444444554
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=288.16 Aligned_cols=386 Identities=15% Similarity=0.086 Sum_probs=273.2
Q ss_pred chHHHHHHHHHHHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHHHHHHHHHh
Q 035548 19 LTGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFL 98 (518)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~ 98 (518)
.++++|.....+.++.+.++++....+.+. |.+.+++ |++..+.+++.+++.++..+++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~-----------------~~s~~~~g~~~~~~~~~~~~~~~~ 66 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVL--AEVAGEF-----------------GLTTVDAASLISAALISRWFGALM 66 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh-----------------CCChhhHHHHHHHHHHHHHHHHHH
Confidence 456777778888888899999998887554 6666666 899999999999999999999999
Q ss_pred hHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchhHHhHHHHHHH
Q 035548 99 ASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLIT 178 (518)
Q Consensus 99 ~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 178 (518)
.|+++||+|||+++..+.++.+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+.+..
T Consensus 67 ~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 146 (405)
T TIGR00891 67 FGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYA 146 (405)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccCChhhHHhcCChhHHHHHHHhhhCCccHHHHHHHHHH
Q 035548 179 VGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICR 258 (518)
Q Consensus 179 ~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 258 (518)
+|..+++.++..+....+.+||+.|++.++..++..+....+||++++..++++.++..+..++..+.....+
T Consensus 147 ~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 219 (405)
T TIGR00891 147 VGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIA------- 219 (405)
T ss_pred HHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhh-------
Confidence 9999999997766543333599999988777766666667788877654322221111111111110000000
Q ss_pred HHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHH-HHcCCCChHHHHHHHHHHHHHHHHhhhhh
Q 035548 259 ATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLF-QTMGYGSNASLLSAVISGTINVASTLVAI 337 (518)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 337 (518)
...++.....++ +....+......................+.|.++ ++.|++..+.+.......++.+++.++.+
T Consensus 220 --~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g 295 (405)
T TIGR00891 220 --NIVMTLAAAMVQ--SAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFG 295 (405)
T ss_pred --hhhhhhhHHhhh--hhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000011 1111122121111111111112223444556555 46799999999999999999999999999
Q ss_pred hhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhh
Q 035548 338 VLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETR 417 (518)
Q Consensus 338 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r 417 (518)
++.||++||+.+..+.....+........ ....+.......+.... ..+..+....++.|.+|++.|
T Consensus 296 ~l~dr~g~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 362 (405)
T TIGR00891 296 FLGDWLGRRKAYVCSLLAGQLLIIPVFAI------------GANVAVLGLGLFFQQML-VQGIWGILPKHLGEYFPTDQR 362 (405)
T ss_pred HHHHHhCchhhhHHHHHHHHHHHHHHHHh------------CCchHHHHHHHHHHHHH-HccchhhHHHHHhhhCCcchh
Confidence 99999999998877665443322222111 12222222222222222 222234445677899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHhccc
Q 035548 418 NAGYFFAVSTNMVFTFVIAQAFLSMLCKMR 447 (518)
Q Consensus 418 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (518)
+++.|+.+....++..++|.+.|.+.|..|
T Consensus 363 ~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g 392 (405)
T TIGR00891 363 AAGLGFTYQLGNLGGALAPIIGALLAQRLD 392 (405)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999888
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=288.93 Aligned_cols=374 Identities=15% Similarity=0.153 Sum_probs=268.3
Q ss_pred HHHHHHHHHHHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHHHHHHHHHhhH
Q 035548 21 GQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLAS 100 (518)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~G 100 (518)
+.++...+.+.++.+.++++.....+.. |.+.+++ |+++.+.+++.+++.+++.+++++.|
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~-----------------~~s~~~~~~~~~~~~~~~~l~~~~~g 74 (426)
T PRK12307 14 RPQKNALFSAWLGYVFDGFDFMLIFYIM--YLIKADL-----------------GLTDMEGAFLATAAFIGRPFGGALFG 74 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHh-----------------CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556677778888899988776443 6666666 89999999999999999999999999
Q ss_pred HhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchhHHhHHHHHHHHH
Q 035548 101 IVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVG 180 (518)
Q Consensus 101 ~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 180 (518)
+++||+|||+++.++.++.+++.++++++++++.++++|+++|++.+...+....++.|++|+++|+++.++...+..+|
T Consensus 75 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg 154 (426)
T PRK12307 75 LLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIG 154 (426)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccCChhhHHhcCChhHHHHHHHhhhCCccHHHHHHHHHHHH
Q 035548 181 ILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRAT 260 (518)
Q Consensus 181 ~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 260 (518)
.++++.+...+. +..+||+.|++..+..++........||++++..++.+.+ ++. ..
T Consensus 155 ~~~~~~l~~~l~--~~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~------------~~~---------~~ 211 (426)
T PRK12307 155 NIIAAYFMPSFA--EAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSGK------------GKH---------SQ 211 (426)
T ss_pred HHHHHHHHHHHc--ccCCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhcc------------ccc---------cc
Confidence 999998865553 3368999998865544443333333556554321110000 000 00
Q ss_pred HhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhh
Q 035548 261 EISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLV 340 (518)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 340 (518)
...+....++++.++++..+.........+ ...........+.|.++++.|+++.+.+.......++.++++++.+++.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~ 290 (426)
T PRK12307 212 SAWSVFSLSMKGLFNRAQFPLTLCVFIVLF-SIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCA 290 (426)
T ss_pred cchhhhhHHHHHHHhhchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000123445555444433333222222 2222233456677888888899988889888999999999999999999
Q ss_pred hccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhh-hccccccceeeecccCChhhhhh
Q 035548 341 DKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGF-AWSWGPICWLISSEIYPLETRNA 419 (518)
Q Consensus 341 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~r~~ 419 (518)
||++||+.+..+.++..+..+.+... +.. ....+ ..+.++.++ ..+..+....++.|.+|++.|++
T Consensus 291 dr~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~ 357 (426)
T PRK12307 291 DRIGLKKTFSIGLLMSFLFIFPLFRI-----------PQD-NYLLL-GACLFGLMATNVGVGGLVPKFLYDYFPLEVRGL 357 (426)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHH-----------ccc-cHHHH-HHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhh
Confidence 99999998887766655544333221 111 11111 122222211 12222334456789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhccchhh
Q 035548 420 GYFFAVSTNMVFTFVIAQAFLSMLCKMRWGI 450 (518)
Q Consensus 420 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (518)
+.|+.+....+++.++|.+.|.+.+..+...
T Consensus 358 ~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~ 388 (426)
T PRK12307 358 GTGLIYNLAATSGTFNSMAATWLGITMGLGA 388 (426)
T ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHcccHHH
Confidence 9999999999999999999999999888543
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=291.22 Aligned_cols=399 Identities=14% Similarity=0.079 Sum_probs=266.2
Q ss_pred hHHHHHHHHHHHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHHHHHHHHHhh
Q 035548 20 TGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLA 99 (518)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~ 99 (518)
++.++.......++.+...++...++.. +|.+.+++ |++..+.|++.+++.+++.+++++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----------------g~s~~~~g~~~~~~~~~~~~~~~~~ 78 (434)
T PRK11663 18 RYWRRHILITMYLGYALFYFTRKSFNAA--MPEMLADL-----------------GLSRSDIGLLATLFYITYGVSKFVS 78 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHh--hHHHHHhc-----------------CCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444455555666667777766655533 36666665 8999999999999999999999999
Q ss_pred HHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchhHHhHHHHHHHH
Q 035548 100 SIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITV 179 (518)
Q Consensus 100 G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 179 (518)
|+++||+|||+++.++.++.+++.++++++++++.+++.|++.|++.|...+...+++.|++|+++|++++++.+.+.++
T Consensus 79 G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~ 158 (434)
T PRK11663 79 GIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNV 158 (434)
T ss_pred hHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccCCCcchHHHHhhhHHHHHH-HHHhhcccCChhhHHhcCChhHHHHHHHhhhCCccHHHHHHHHHH
Q 035548 180 GILAANLINYGTSRIHPYGWRISLGGAAVPALFL-LLGSCIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICR 258 (518)
Q Consensus 180 G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 258 (518)
|..+++.+++.+.. .+|||+.|++.+++.++. ++..++++|+|++.......+... +.+ +
T Consensus 159 g~~~~~~~~~~l~~--~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~----------~~~-------~ 219 (434)
T PRK11663 159 GGALIPLVVGAIAL--HYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRH----------DAL-------E 219 (434)
T ss_pred HHHHHHHHHHHHHH--cccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccc----------ccc-------c
Confidence 99999998776643 368999999988876654 344556788775321110000000 000 0
Q ss_pred HHHhhcccccchhhhcc--cCChhHHHHHHHHHHHHHhhchhHHHHhHHHHH-HHcCCCChHHHHHHHHHHHHHHHHhhh
Q 035548 259 ATEISNLIKHPYRSLMK--KSSRPQLICGTFIHMLQQLTGINVVMFYAPVLF-QTMGYGSNASLLSAVISGTINVASTLV 335 (518)
Q Consensus 259 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~ 335 (518)
..++.++++.+.++.++ ..+.+..+.. .+..+........+..|.|.++ ++.|++..+++.......++.++++++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~ 298 (434)
T PRK11663 220 LAQQQEGAGLSRKEILTKYVLLNPYIWLL-SFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALV 298 (434)
T ss_pred cchhccccCCChhhhHHHHHhcChHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 00000001112222221 1112222222 2222222333455667788887 557999999999999999999999999
Q ss_pred hhhhhhcc--CChHHHH-HhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccC
Q 035548 336 AIVLVDKA--GRKILLV-QAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIY 412 (518)
Q Consensus 336 ~g~l~d~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (518)
.|++.||+ ++|+... .......+....+... +..+...........+. +..+..........|.+
T Consensus 299 ~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~ 366 (434)
T PRK11663 299 AGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLM-----------PFASYVMQAACFFTIGF-FVFGPQMLIGMAAAECS 366 (434)
T ss_pred HhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHc-----------ccccHHHHHHHHHHHHH-HHhhHHHHHHHHHHhcc
Confidence 99999998 3333322 2212212121111111 11112222122222211 11111112234467999
Q ss_pred ChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHH-HHHHHHHHHHHhcc
Q 035548 413 PLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFFT-GWLLISLIFSATML 469 (518)
Q Consensus 413 p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 469 (518)
|++.|+++.|+.+...++|.+++|.+.|.+.|..++...+... ++.++.++..+...
T Consensus 367 ~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 424 (434)
T PRK11663 367 HKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFL 424 (434)
T ss_pred cHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988865444444 44444444444433
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=298.64 Aligned_cols=377 Identities=11% Similarity=-0.018 Sum_probs=255.8
Q ss_pred hHHHHHHHHHHHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHHHHHHHHHhh
Q 035548 20 TGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLA 99 (518)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~ 99 (518)
++..+.......++.++...|...++... |.+.++| |++..+.|++.+++.+++.+++++.
T Consensus 24 ~~~~~~i~~~~~~~~~~~y~~r~~~~~~~--~~i~~~~-----------------~~s~~~~g~~~s~~~~~~~~~~~~~ 84 (467)
T PRK09556 24 FKPFMQSYLVVFIGYLTMYLIRKNFKAAQ--NDMISTY-----------------GLSTTELGMIGLGFSITYGVGKTLV 84 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhhhh--HHHHHhc-----------------CCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 34455566666677777777888877444 6777776 8999999999999999999999999
Q ss_pred HHhhhhhccHHHHHHHHHHHHHHHHHHHh-----hccHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchhHHhHHH
Q 035548 100 SIVCRKFGRKPTIQAASVFFLIGAILNCL-----AQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQ 174 (518)
Q Consensus 100 G~l~dr~Grr~~l~~~~~l~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~ 174 (518)
|+++||+|||+++..+.++++++.++.++ +++++.+++.|+++|++.+...+...++++||+|+++|+++++++.
T Consensus 85 G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~ 164 (467)
T PRK09556 85 GYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWN 164 (467)
T ss_pred hhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeee
Confidence 99999999999999988888877766655 5899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccc-CCCcchHHHHhhhHHHHHHHH-HhhcccCChhhHHhcCChhHHHHHHHhhhCCccHHHH
Q 035548 175 LLITVGILAANLINYGTSRI-HPYGWRISLGGAAVPALFLLL-GSCIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKE 252 (518)
Q Consensus 175 ~~~~~G~~i~~~i~~~~~~~-~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 252 (518)
.+.++|.+++++++..+... ...+||..|.+.+++.++..+ .+++.+++|+....+. .++ .. ......++
T Consensus 165 ~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~-~~~---~~---~~~~~~~~- 236 (467)
T PRK09556 165 ISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGK-AEE---IF---GEPISEED- 236 (467)
T ss_pred cccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCC-hhh---cc---cCccchhh-
Confidence 99999999999886544322 112699999888887766444 4444566664211100 000 00 00000000
Q ss_pred HHHHHHHHHhhcccccchhhhc-c-cCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHH-HcCCCChHHHHHHHHHHHHH
Q 035548 253 YAEICRATEISNLIKHPYRSLM-K-KSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQ-TMGYGSNASLLSAVISGTIN 329 (518)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~ 329 (518)
+..++++.+..+.+ + ..+.+..+..... .++....+.....|.|.+++ ++|++..+++.......++.
T Consensus 237 --------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~ 307 (467)
T PRK09556 237 --------KETESTDMTKWQIFVEYVLKNPVIWLLCFA-NIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGA 307 (467)
T ss_pred --------hccccccCcHHHHHHHHHHcChHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 00000011111111 1 1122233333333 33333334556778887775 57999999999999999999
Q ss_pred HHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeec
Q 035548 330 VASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISS 409 (518)
Q Consensus 330 ~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (518)
+++.++.|+++||++||+..........++...+.+. ...+.+......++.+.... +..........
T Consensus 308 ~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~G~~~~-~~~~~~~~~~~ 375 (467)
T PRK09556 308 LVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQ-----------HATSEYMYLASLFALGFLVF-GPQLLIGVAAV 375 (467)
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHH-----------hcCcHHHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 9999999999999999887665443333322221111 11222222222222222211 11111124456
Q ss_pred ccCChhhhhhHHHHHHHHHHH-HHHHHHHHhHHHHh
Q 035548 410 EIYPLETRNAGYFFAVSTNMV-FTFVIAQAFLSMLC 444 (518)
Q Consensus 410 ~~~p~~~r~~~~g~~~~~~~~-~~~~~~~~~~~~~~ 444 (518)
|.+|++.+|++.|+.+..+++ +.+++|.+.|.+.|
T Consensus 376 ~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~ 411 (467)
T PRK09556 376 GFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIAD 411 (467)
T ss_pred hhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence 999999999999999999997 77999999999999
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=290.79 Aligned_cols=399 Identities=14% Similarity=0.101 Sum_probs=270.8
Q ss_pred chHHHHHHHHHHHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHHHHHHHHHh
Q 035548 19 LTGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFL 98 (518)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~ 98 (518)
.+++++.....+.++.++++++....++.. |.+.+++ |++..+.+++.+.+.+++.+++++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~-----------------~~s~~~~~~~~~~~~~~~~~~~~~ 74 (496)
T PRK03893 14 LNRAQWKAFSAAWLGYLLDGFDFVLITLVL--TEVQGEF-----------------GLTTVQAASLISAAFISRWFGGLL 74 (496)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh-----------------CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777788888888888776443 6666666 899999999999999999999999
Q ss_pred hHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchhHHhHHHHHHH
Q 035548 99 ASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLIT 178 (518)
Q Consensus 99 ~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 178 (518)
.|+++||+|||+++..+.++.+++.++++++++++.+++.|++.|++.+...+....++.|++|+++|++++++...+..
T Consensus 75 ~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 154 (496)
T PRK03893 75 LGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFS 154 (496)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccCChhhHHhcCChhHHHHHHHhhhCCccHHHHHHH-HH
Q 035548 179 VGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAE-IC 257 (518)
Q Consensus 179 ~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ 257 (518)
+|..+++.+++.+.. ..+||+.|++.++..++.++....+||++++..++++.++..+..+.....+........ ..
T Consensus 155 ~g~~~~~~~~~~l~~--~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (496)
T PRK03893 155 IGAVVAAQVYSLVVP--VWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLA 232 (496)
T ss_pred HHHHHHHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHH
Confidence 999999999776543 468999998866655555555556777765433222211111111111000000000000 00
Q ss_pred H----HHHhhcccccchh-------------h--hcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHH-HcCCCChH
Q 035548 258 R----ATEISNLIKHPYR-------------S--LMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQ-TMGYGSNA 317 (518)
Q Consensus 258 ~----~~~~~~~~~~~~~-------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~ 317 (518)
. ...........+. . ......+++.........+..+........+.|.+++ +.|++..+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~ 312 (496)
T PRK03893 233 AAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHT 312 (496)
T ss_pred HHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHH
Confidence 0 0000000000000 0 0001111121222222222211112234567788884 78999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhh
Q 035548 318 SLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFA 397 (518)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (518)
.+.......++.+++.++.+++.||++||+.+..+..+..+..+.+... .....+ ..........+..
T Consensus 313 ~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~-~~~~~~~~~~~~~ 380 (496)
T PRK03893 313 VANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAI-----------GGANVW-VLGLLLFFQQMLG 380 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc-----------cccHHH-HHHHHHHHHHHHh
Confidence 9999999999999999999999999999998877665544443332221 112222 2212222212222
Q ss_pred ccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchhh
Q 035548 398 WSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWGI 450 (518)
Q Consensus 398 ~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (518)
.+..+....++.|.+|++.|++++|+.+....+++.++|.+.|.+.+..++..
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~ 433 (496)
T PRK03893 381 QGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGT 433 (496)
T ss_pred cccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHH
Confidence 22334445667899999999999999999999999999999999999888653
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-37 Score=276.62 Aligned_cols=441 Identities=21% Similarity=0.245 Sum_probs=308.3
Q ss_pred CcchHHHHHHHHHHHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHHHHHHHH
Q 035548 17 AKLTGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVAC 96 (518)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~ 96 (518)
...+|+....+.++..+.|.++||...++.+. |-+...|+ +.++.+ =+.++...+.+..+.++|.++||
T Consensus 33 ~g~qw~~fk~i~iAG~GfftDsYDlF~I~lVt--~il~~lY~--------~~~~~~-g~~ps~i~~~Vn~~A~vGti~GQ 101 (538)
T KOG0252|consen 33 EGLQWKHFKAIIIAGMGFFTDSYDLFSISLVT--KILGYLYY--------HGDESG-GHYPSGVLALVNAAALVGTIFGQ 101 (538)
T ss_pred cchhHHHHHHHHHhhhhhcccchhhhhHHHHH--HHHHHHhc--------CCCCCC-CcCCchHHHHHHHHHHHHHHHHH
Confidence 34589999999999999999999999998665 33333331 111111 25677888999999999999999
Q ss_pred HhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhc-------cHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchhH
Q 035548 97 FLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQ-------NLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGL 169 (518)
Q Consensus 97 ~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~-------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~ 169 (518)
+++|+++||+|||+++...+++..+++++++++. -.+++...|++.|+|.|+-+|...+..+|...+++||..
T Consensus 102 l~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~ 181 (538)
T KOG0252|consen 102 LFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAF 181 (538)
T ss_pred HHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccce
Confidence 9999999999999999999999999999888752 246888889999999999999999999999999999998
Q ss_pred HhHHHHHHHHHHHHHHHHHhhcccc-----C--------CCcchHHHHhhhHHHHHHHHHhhcccCChhhHHhcC-ChhH
Q 035548 170 NICFQLLITVGILAANLINYGTSRI-----H--------PYGWRISLGGAAVPALFLLLGSCIIVETPASLIERG-KQEQ 235 (518)
Q Consensus 170 ~~~~~~~~~~G~~i~~~i~~~~~~~-----~--------~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~-~~~~ 235 (518)
.+..-+..+.|.+.|.+++..+... . +.-||..|.+.+++++..+...+.+||++++..... +.+.
T Consensus 182 iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~ 261 (538)
T KOG0252|consen 182 IAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQ 261 (538)
T ss_pred eEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhh
Confidence 8888777777777777665433211 0 134999999999999999999999999999874333 2222
Q ss_pred HHHHHHhhhCCccHHHHHHHHHHHHHhhcccccch---hhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcC
Q 035548 236 GLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPY---RSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQTMG 312 (518)
Q Consensus 236 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 312 (518)
+.+ +..+....+ .++.+........++.++ ...+..+ .-+.++.....++..-..++....+...++++.|
T Consensus 262 a~~---d~~k~~~~~--~~~~~~~~~~~~~~~~~~~~F~~~f~~~-hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig 335 (538)
T KOG0252|consen 262 AAG---DMKKVLSVD--IEAESTAESDVPPPSNSFGLFSRLFLRW-HGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIG 335 (538)
T ss_pred hhh---ccccccccc--cchhhccccCCCCcccccchHHHHHHHH-HHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhc
Confidence 221 111111111 000001111111111122 2222222 2234555555566555667777788888888887
Q ss_pred CCChHHHH---------HHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhH
Q 035548 313 YGSNASLL---------SAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAK 383 (518)
Q Consensus 313 ~~~~~~~~---------~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (518)
+.+.+... -..+.....++|..+...++|++|||++.+.+++++.+..+.++.... . .....
T Consensus 336 ~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~-------~--~~~~~ 406 (538)
T KOG0252|consen 336 VIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYN-------Q--LENTI 406 (538)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcc-------c--ccccC
Confidence 75543322 122333444557777888999999999999999998888887765321 0 11222
Q ss_pred HHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHh-----ccch-hhHHHHHHH
Q 035548 384 VVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLC-----KMRW-GIFFFFTGW 457 (518)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~ 457 (518)
...+...+..+....+.+.....+.+|.+|++.|++..|+..+.+-.|++++...+.++.+ ..+. ..+++++++
T Consensus 407 Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~ 486 (538)
T KOG0252|consen 407 GFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGC 486 (538)
T ss_pred ceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHH
Confidence 2233333444445556566777889999999999999999999999999999999999988 4443 355555555
Q ss_pred HHHHHHHHHhcccCCCCCCHHHHHHHH
Q 035548 458 LLISLIFSATMLPETKGIPIDEMVDRA 484 (518)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (518)
+.+ ..+..+++||+++++++|++++.
T Consensus 487 ~~~-gi~~T~l~pEtk~~~leei~~e~ 512 (538)
T KOG0252|consen 487 MLL-GILFTLLIPETKGKSLEEISNEE 512 (538)
T ss_pred HHH-hHheeEEeecccccCHHHhcChh
Confidence 554 45555668899999999886433
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=279.63 Aligned_cols=367 Identities=12% Similarity=0.123 Sum_probs=255.2
Q ss_pred HHHHHHHHHHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHHHHHHHHHhhHH
Q 035548 22 QVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLASI 101 (518)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~G~ 101 (518)
++|...+.+.++.+....+.....++ .|.+.+++ |+++.+.|++.+.+.+++.+++++.|+
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~l~~~~-----------------~~s~~~~g~~~~~~~~~~~~~~~~~g~ 66 (390)
T PRK03545 6 VAWLRVVTLALAAFIFNTTEFVPVGL--LSDIAQSF-----------------HMQTAQVGLMLTIYAWVVALMSLPLML 66 (390)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHcc--hHHHHhHc-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555444443333222 36666666 999999999999999999999999999
Q ss_pred hhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchhHHhHHHHHHHHHH
Q 035548 102 VCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGI 181 (518)
Q Consensus 102 l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~ 181 (518)
++||+|||+++..+.++.+++++++++++|+++++++|+++|++.+...+...+++.|++|+++|++++++...+.++|.
T Consensus 67 l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~ 146 (390)
T PRK03545 67 LTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAM 146 (390)
T ss_pred HHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHH-hhcccCChhhHHhcCChhHHHHHHHhhhCCccHHHHHHHHHHHH
Q 035548 182 LAANLINYGTSRIHPYGWRISLGGAAVPALFLLLG-SCIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRAT 260 (518)
Q Consensus 182 ~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 260 (518)
.++|++++.+.. ..|||+.|++.++++++..+. ...+||+|+. +.++
T Consensus 147 ~ig~~l~~~l~~--~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~-----~~~~------------------------- 194 (390)
T PRK03545 147 VLGLPLGRVIGQ--YLGWRTTFLAIGGGALITLLLLIKLLPLLPSE-----HSGS------------------------- 194 (390)
T ss_pred HHHhhHHHHHHH--HhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCC-----Ccch-------------------------
Confidence 999999776543 358999999998887765443 3445654320 0000
Q ss_pred HhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHH-HHcCCCChHHHHHHHHHHHHHHHHhhhhhhh
Q 035548 261 EISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLF-QTMGYGSNASLLSAVISGTINVASTLVAIVL 339 (518)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l 339 (518)
..+.++.++++..+...... +..... ......+.+.++ +..|++..+.+......+++.++++++.+++
T Consensus 195 ------~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l 264 (390)
T PRK03545 195 ------LKSLPLLFRRPALVSLYLLT---VVVVTA-HFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRL 264 (390)
T ss_pred ------HHHHHHHHhCcHHHHHHHHH---HHHHHH-HHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00122333333322222222 111111 222234444444 4569999999999999999999999999999
Q ss_pred hhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhh
Q 035548 340 VDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNA 419 (518)
Q Consensus 340 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~ 419 (518)
.||+++|... .+.....++...+... ..+.+..+....+.+.+.. ...+.....+.+..| +.|++
T Consensus 265 ~dr~~~~~~~-~~~~~~~~~~~~l~~~------------~~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~-~~~~~ 329 (390)
T PRK03545 265 GNRHPSGFLL-IAIALLLVCLLLLLPA------------ANSEWHLSVLSIFWGIAIM-CIGLAMQVKVLKLAP-DATDV 329 (390)
T ss_pred hhccchhHHH-HHHHHHHHHHHHHHHH------------hchHHHHHHHHHHHHHHHh-cchHHHHHHHHHhCC-CcHHH
Confidence 9999987654 3333333333222221 1222333333333333332 222333455567766 57799
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHHHHH
Q 035548 420 GYFFAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLISLIF 464 (518)
Q Consensus 420 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (518)
++|+.+...++|..++|.+.|.+.|..++...+...+...+.+.+
T Consensus 330 ~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~ 374 (390)
T PRK03545 330 AMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALV 374 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999865444444444443333
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-35 Score=255.52 Aligned_cols=385 Identities=17% Similarity=0.197 Sum_probs=295.4
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccch
Q 035548 73 YCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQA 152 (518)
Q Consensus 73 ~~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 152 (518)
..+.+..|..++....+.|..+++..||.++|++|||+.+.+.....++...+.+.++|+..+.+.|.+.|+|.|+ .|.
T Consensus 107 ~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv 185 (528)
T KOG0253|consen 107 VWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPV 185 (528)
T ss_pred hhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccH
Confidence 3478888999999999999999999999999999999999999999999999999999999999999999999998 899
Q ss_pred hhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccCChhhHHhcCC
Q 035548 153 VPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGK 232 (518)
Q Consensus 153 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~ 232 (518)
..++-.|..|..+|..-+-.. ..+.+|.+....++.+... .+||||.....+.+..+.....+++|||||+...+++
T Consensus 186 ~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~--~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~ 262 (528)
T KOG0253|consen 186 DSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMS--NFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGD 262 (528)
T ss_pred hHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCC
Confidence 999999999999998877777 8999999999999776643 3599999988888888888888999999999999999
Q ss_pred hhHHHHHHHhhhCCccHH-----------HHHHH----HHH-HHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhc
Q 035548 233 QEQGLYTLRKIRGVKDVE-----------KEYAE----ICR-ATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTG 296 (518)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~-----------~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (518)
+++|.+.++++.+.|..+ .+.++ .++ +.+..++......+++....+|..+......+...+..
T Consensus 263 ~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsy 342 (528)
T KOG0253|consen 263 DYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSY 342 (528)
T ss_pred hHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHHHHHHHhhHHHH
Confidence 999999999987765211 11111 001 11112233455667777777777666666655554443
Q ss_pred hhHHHHhHHHHHHHc--------------------CCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHH
Q 035548 297 INVVMFYAPVLFQTM--------------------GYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQM 356 (518)
Q Consensus 297 ~~~~~~~~~~~~~~~--------------------g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 356 (518)
++.+. ....+++.. ..+......-..+..+...+|.++.++++||+|||+.+..+++++
T Consensus 343 yg~VL-lttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f 421 (528)
T KOG0253|consen 343 YGSVL-LTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILF 421 (528)
T ss_pred HHHHH-HHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHH
Confidence 33332 222222221 112222334456778899999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHH
Q 035548 357 IICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIA 436 (518)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~ 436 (518)
+++.+++.... ......+..+..-++...++ ...|.|..|++|+..|+++.|.....+.+|+++.|
T Consensus 422 ~iflfll~~c~-------------~rn~~tvllf~arafisg~f-qvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p 487 (528)
T KOG0253|consen 422 GIFLFLLTTCK-------------TRNAYTVLLFTARAFISGAF-QVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSP 487 (528)
T ss_pred HHHHHHHHHhc-------------CcchhHHHHHHHHHHHhchh-eEEEEecCcccchhhhhcchhhhhhHHhhhhhhhh
Confidence 88877776531 22222333333333333333 47799999999999999999999999999999999
Q ss_pred HHhHHHHhccchhhHHHHHHHHHHHHHHHHhcccCCCCCCH
Q 035548 437 QAFLSMLCKMRWGIFFFFTGWLLISLIFSATMLPETKGIPI 477 (518)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (518)
.+. ...+..-+.+..++.++++++++...++--|+|+|..
T Consensus 488 ~iA-~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 488 VIA-MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred HHH-HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 998 4455555677888888888888888777778888753
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=280.95 Aligned_cols=360 Identities=16% Similarity=0.221 Sum_probs=240.7
Q ss_pred HHHHHHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHH-HHHH-----HHHHHHHHHhh
Q 035548 26 CSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLF-TSSL-----YLAAIVACFLA 99 (518)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~-~s~~-----~l~~~i~~~~~ 99 (518)
......++.+++.+|...++... |.+.++| +.++.+.+.+ .+.. .++..+++++.
T Consensus 16 ~~~~~~~~~~~~~~d~~~~~~~~--~~i~~~~-----------------~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~ 76 (434)
T PRK15075 16 AILRVTSGNFLEMFDFFLFGFYA--TAIAKTF-----------------FPAGNEFASLMLTFAVFGAGFLMRPLGAIVL 76 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh-----------------CCCCCchHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 57777788999999999988554 7777777 5555554433 3322 23335789999
Q ss_pred HHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHH--------HHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchhHHh
Q 035548 100 SIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLG--------MLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNI 171 (518)
Q Consensus 100 G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~ 171 (518)
|+++||+|||++++.+.+++++++++++++++++ .++++|+++|++.+...+....+++|++|+++|+++++
T Consensus 77 G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~ 156 (434)
T PRK15075 77 GAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTS 156 (434)
T ss_pred HHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHH
Confidence 9999999999999999999999999999999987 46889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccc------cCCCcchHHHHhhhHHHHHHHHHhhcccCChhhHHhcCChhHHHHHHHhhhC
Q 035548 172 CFQLLITVGILAANLINYGTSR------IHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTLRKIRG 245 (518)
Q Consensus 172 ~~~~~~~~G~~i~~~i~~~~~~------~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~a~~~~~~~~~ 245 (518)
+...+..+|..+++.++..+.. .+.+|||++|++..+...+........||++++..++
T Consensus 157 ~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~--------------- 221 (434)
T PRK15075 157 WQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARK--------------- 221 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhh---------------
Confidence 9998888888887777655421 1347999999876544332222222233332110000
Q ss_pred CccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHHH-cCCCChHHHHHHHH
Q 035548 246 VKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQT-MGYGSNASLLSAVI 324 (518)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~ 324 (518)
.+.+.+..+++.. +.++.+.......+.....+.....|.|.++++ .|++..+.++....
T Consensus 222 ----------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~ 282 (434)
T PRK15075 222 ----------------HRPSMREIFRSLA---ANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLC 282 (434)
T ss_pred ----------------hccccccHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 0000000111111 112222222222222334456677888888875 69998888888888
Q ss_pred HHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccc
Q 035548 325 SGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPIC 404 (518)
Q Consensus 325 ~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (518)
..++.+++.++.|+++||++||+.+..+.....+.......... .............+...+++. ..+..
T Consensus 283 ~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~g~-~~~~~ 352 (434)
T PRK15075 283 VGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLV---------AAPSFARMLAVELWLSFLYGS-YNGAM 352 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH---------cCCchHHHHHHHHHHHHHHHH-HHhhH
Confidence 89999999999999999999999877654443322111111100 111111111112222222222 22333
Q ss_pred eeeecccCChhhhhhHHHHHHHHHHH-HHHHHHHHhHHHHhccch
Q 035548 405 WLISSEIYPLETRNAGYFFAVSTNMV-FTFVIAQAFLSMLCKMRW 448 (518)
Q Consensus 405 ~~~~~~~~p~~~r~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~ 448 (518)
+.+..|.+|++.|+++.++.+..+.. ++.++|.+.+.+.|..++
T Consensus 353 ~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~ 397 (434)
T PRK15075 353 VVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGD 397 (434)
T ss_pred HHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence 45678999999999999997666554 588899999999998874
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-33 Score=267.62 Aligned_cols=376 Identities=13% Similarity=0.088 Sum_probs=262.6
Q ss_pred HHHHHHHHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHHHHHHHHHhhHHhh
Q 035548 24 LVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLASIVC 103 (518)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~ 103 (518)
|......+.+.+..-.. ...+ ..+|.+.++| |+|..+.+++.+++.+++.+++++.|+++
T Consensus 9 ~~~~~~~~~~~~~~~~~-~~~~--~~lp~i~~~~-----------------~~s~~~~g~~~s~~~~~~~l~~~~~g~l~ 68 (393)
T PRK09705 9 FMLLVLVLIGLNMRPLL-TSVG--PLLPQLRQAS-----------------GMSFSVAALLTALPVVTMGGLALAGSWLH 68 (393)
T ss_pred HHHHHHHHHHHHcchhh-hccc--hhHHHHHHHh-----------------CCCHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 44444444444443333 2233 2347777777 99999999999999999999999999999
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchhHHhHHHHHHHHHHHH
Q 035548 104 RKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILA 183 (518)
Q Consensus 104 dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i 183 (518)
||+|||+++..+..+++++.+++++++|++.++++|+++|++.+...+....++.+++| ++|+++++++..+..+|..+
T Consensus 69 dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~ 147 (393)
T PRK09705 69 QHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGL 147 (393)
T ss_pred HHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999997 77999999999999999999
Q ss_pred HHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhccc-CChhhHHhcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHh
Q 035548 184 ANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIV-ETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEI 262 (518)
Q Consensus 184 ~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~-e~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (518)
++.++..+... ..+||..+.+.++..++.++..+... +.|+ ++
T Consensus 148 g~~~~~~l~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~--------------------------- 191 (393)
T PRK09705 148 GAAITPWLVQH-SETWYQTLAWWALPAVVALFAWWWQSAREVA--------SS--------------------------- 191 (393)
T ss_pred HHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHhcCCCc--------cc---------------------------
Confidence 99887665432 13799988766665544433333221 1111 00
Q ss_pred hcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 035548 263 SNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDK 342 (518)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 342 (518)
++ ++....+.++ +++.+...... ......+.....+.|.++++.|++..+++......+++.++++++.+++.||
T Consensus 192 ~~-~~~~~~~~l~---~~~~~~l~~~~-~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r 266 (393)
T PRK09705 192 HK-TTTTPVRVVF---TPRAWTLGVYF-GLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARH 266 (393)
T ss_pred cC-CCcCCccccc---CHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 00 0001112222 22222222222 2223345567778888888889999999999999999999999999999999
Q ss_pred cCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccC-ChhhhhhHH
Q 035548 343 AGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIY-PLETRNAGY 421 (518)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~r~~~~ 421 (518)
++||+....+..+..++...+... +.. ..... ..+.+.+.+.. .+.......+.. |++.+++.+
T Consensus 267 ~~~~~~~~~~~~l~~~~~~~~~~~-----------~~~-~~~~~--~~l~g~g~g~~-~~~~~~~~~~~~~~~~~~g~~~ 331 (393)
T PRK09705 267 QDRRKLLMLALVLQLVGFCGFIWL-----------PLQ-LPVLW--AMVCGLGLGGA-FPLCLLLALDHSVQPAIAGKLV 331 (393)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHc-----------cch-HHHHH--HHHHHHhccch-HHHHHHHHHhhcCCHHHHHHHH
Confidence 999998887766666655444321 111 11111 12222333222 233333344555 467899999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhccc-hhhHH-HHHHHHHHHHHHHHhcccCCCCCC
Q 035548 422 FFAVSTNMVFTFVIAQAFLSMLCKMR-WGIFF-FFTGWLLISLIFSATMLPETKGIP 476 (518)
Q Consensus 422 g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 476 (518)
|+.+..+++++.++|.+.|++.|..| +...+ +...++++..+..+.+.||++++.
T Consensus 332 g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK09705 332 AFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQL 388 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccch
Confidence 99999999999999999999999987 44433 334444444555566667766554
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=272.44 Aligned_cols=354 Identities=11% Similarity=0.003 Sum_probs=219.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhh
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVP 154 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (518)
|++..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.++++++++++.++++|+++|++.+.. ....
T Consensus 67 gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~-~~~~ 145 (476)
T PLN00028 67 NLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATF-VSCQ 145 (476)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhh-HHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999998865 4456
Q ss_pred hHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccc----c---CCCcchHHHHhhhHHHHHHHHHhhcccCC-hhh
Q 035548 155 LFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSR----I---HPYGWRISLGGAAVPALFLLLGSCIIVET-PAS 226 (518)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~----~---~~~~wr~~f~~~~~~~~~~~~~~~~~~e~-p~~ 226 (518)
.+++|++|+++|++++++.....++|..+++.+...+.. . ...|||+.|++.+++.++..+..++++++ |+
T Consensus 146 ~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~- 224 (476)
T PLN00028 146 YWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPD- 224 (476)
T ss_pred HHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCC-
Confidence 789999999999999999987777777776655432211 1 12489999999998887766555555543 31
Q ss_pred HHhcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHH
Q 035548 227 LIERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPV 306 (518)
Q Consensus 227 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (518)
++.++.. +. . ..++.+....+++.++.+.. +......+ ...........+.|.
T Consensus 225 ----~~~~~~~----~~---~------------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~p~ 277 (476)
T PLN00028 225 ----GNYRELK----KS---G------------TMPKDSFSKVLRYGVTNYRT---WILALTYG-YSFGVELTMDNIIAE 277 (476)
T ss_pred ----CchhhHH----hc---C------------ccccccHHHHHHHHHcCchh---HHHHHHHH-HHHHHHHHHHhHHHH
Confidence 0000000 00 0 00000000112233333322 22222222 222222334556666
Q ss_pred HH-HHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChH----HHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCch
Q 035548 307 LF-QTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKI----LLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVP 381 (518)
Q Consensus 307 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (518)
++ ++.|++..+++.+..+..++.++++++.|+++||++||+ ..........+..+.+.... ...+
T Consensus 278 ~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~----------~~~~ 347 (476)
T PLN00028 278 YFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLG----------RANS 347 (476)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhc----------ccch
Confidence 65 456999999999999999999999999999999998652 11111111111111111110 0112
Q ss_pred hHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHH
Q 035548 382 AKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLIS 461 (518)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (518)
....+..++++..+..... +..+.+..+..| +.+|++.|+.+..+.+++++++.+.+. .+..++...+.+.+++.+.
T Consensus 348 ~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~~-~~~~~y~~~f~~~~~~~~i 424 (476)
T PLN00028 348 LGAAIVVMILFSIFVQAAC-GATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFFT-GSSYSTETGISLMGVMIIA 424 (476)
T ss_pred HHHHHHHHHHHHHHHHHhh-hhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHHh-cCCccHhhHHHHHHHHHHH
Confidence 2222223333333322222 234455566654 678999999988887888887776541 1122343333333333344
Q ss_pred HHHHHhccc
Q 035548 462 LIFSATMLP 470 (518)
Q Consensus 462 ~~~~~~~~~ 470 (518)
+.++.++.+
T Consensus 425 ~~~~~~~~~ 433 (476)
T PLN00028 425 CTLPVAFIH 433 (476)
T ss_pred HHHHHHhee
Confidence 444444443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=259.34 Aligned_cols=335 Identities=11% Similarity=0.013 Sum_probs=226.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhh
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVP 154 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (518)
|+|..+.|++.+++++++.+++++.|+++||+|||+++..+......+.+.....+++++++++|+++|++.+. .+...
T Consensus 22 ~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~~~-~~~~~ 100 (368)
T TIGR00903 22 DVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQPF-LLNAF 100 (368)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHhHH-HHHHH
Confidence 99999999999999999999999999999999999987665555544433333347999999999999999996 55666
Q ss_pred hHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHH-HHHhhcccCChhhHHhcCCh
Q 035548 155 LFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFL-LLGSCIIVETPASLIERGKQ 233 (518)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~ 233 (518)
..++|++|+++|++++++.+.+..+|.+++++++..+.. ..|||+.|++.++++++. ++.++++||+|++.. +.
T Consensus 101 ~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~--~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~---~~ 175 (368)
T TIGR00903 101 APAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYT--AGGLQLLIIPIAAVAAAGIILVLAALPALPFQAA---EG 175 (368)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--ccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC---CC
Confidence 777999999999999999999999999999999877653 469999999988877664 445567898886421 00
Q ss_pred hHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCC
Q 035548 234 EQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQTMGY 313 (518)
Q Consensus 234 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 313 (518)
.+ .+ + . ..+++++++++..+ ...+..++....++.+..|.|.++++.|+
T Consensus 176 ~~-------------~~----~---~-------~~~~~~ll~~~~~~----~~~~~~~~~~~~~~~~~~wlp~~L~~~g~ 224 (368)
T TIGR00903 176 FG-------------FK----D---A-------VKEFGALAGRKDLW----IIGAILGFGVALFDNLAIWLEAALRPAGL 224 (368)
T ss_pred cc-------------hH----H---H-------HHHHHHHHcChhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 00 00 0 0 01234555544332 22233333444566778899999988888
Q ss_pred CChHHHHHHHHHHHHHHHHhhhhhhhhhccCCh---HHHHH-hHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHH
Q 035548 314 GSNASLLSAVISGTINVASTLVAIVLVDKAGRK---ILLVQ-AAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILV 389 (518)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (518)
+.. .+.......+.+.++ .++++||..|| +.... .....++....+.. .. +....+...
T Consensus 225 s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~------------~~-~~~~~~~~~ 287 (368)
T TIGR00903 225 EDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAF------------EL-NRLALFAFI 287 (368)
T ss_pred ChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHH------------cc-ccHHHHHHH
Confidence 754 555555555555555 46777776543 33222 22222222222211 11 122222222
Q ss_pred HHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccc-hhhHHHHHHHHHHHHHHHH
Q 035548 390 CVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMR-WGIFFFFTGWLLISLIFSA 466 (518)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 466 (518)
.+...+ .....+..+.+.+|.+|++.|+++.|+.+..+++++..+|.+.+.+.. + ...+..++...+++.+...
T Consensus 288 ~l~~~~-~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 288 GIAGLL-MLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred HHHHHh-hhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence 222222 222224456778999999999999999999999999999999988874 4 3455666666565555543
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=272.87 Aligned_cols=387 Identities=10% Similarity=-0.020 Sum_probs=273.4
Q ss_pred HHHHHHHHHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHHHHHHHHHhhHHh
Q 035548 23 VLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLASIV 102 (518)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~G~l 102 (518)
+|..+..++++.++...|.++++.. +|++.+++ |.+.++.+|+.+.+.+++.++++++|++
T Consensus 4 ~~~~~~~~~~~~~~~~ld~tiv~~a--~p~i~~~l-----------------~~s~~~~~~~~~~~~l~~~~~~~~~G~l 64 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAIDATVLHVA--APTLSMTL-----------------GASGNELLWIIDIYSLVMAGMVLPMGAL 64 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHh-----------------CCCHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888888899999999998855 48888877 8899999999999999999999999999
Q ss_pred hhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhhhHHHhcC-CCCcchhHHhHHHHHHHHHH
Q 035548 103 CRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIA-PPKYRGGLNICFQLLITVGI 181 (518)
Q Consensus 103 ~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~ 181 (518)
+||+|||+++..+.+++.++++++++++|++.++++|+++|+|.+...+.....+.+++ |+++|++++++......+|.
T Consensus 65 ~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~ 144 (495)
T PRK14995 65 GDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGA 144 (495)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988888887776 67889999999999999999
Q ss_pred HHHHHHHhhccccCCCcchHHHHhhhHHHHHHHH-HhhcccCChhhHHhcCChhHHHH----------HHHhhhCCccHH
Q 035548 182 LAANLINYGTSRIHPYGWRISLGGAAVPALFLLL-GSCIIVETPASLIERGKQEQGLY----------TLRKIRGVKDVE 250 (518)
Q Consensus 182 ~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~a~~----------~~~~~~~~~~~~ 250 (518)
.+||.+++.+.. ..+||+.|++...++++.++ ..+++|++|+...++.+...... .++...+.....
T Consensus 145 ~~gp~lgg~l~~--~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 222 (495)
T PRK14995 145 AFGPLVGGILLE--HFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSL 222 (495)
T ss_pred HHHHHHHHHhhc--cCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCch
Confidence 999999877754 36899999998877776444 44556765532111111111000 000000000000
Q ss_pred -HHHHH-------HHHHHHhhcccccch--hhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHHH-cCCCChHHH
Q 035548 251 -KEYAE-------ICRATEISNLIKHPY--RSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQT-MGYGSNASL 319 (518)
Q Consensus 251 -~~~~~-------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~ 319 (518)
..... .......+.+.+.+. .++++++.... ..... +...........+.|.+++. +|+++.+++
T Consensus 223 ~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag 298 (495)
T PRK14995 223 WVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTHRIILS---GVVMA-MTAMITLVGFELLMAQELQFVHGLSPLEAG 298 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCCcccHH---HHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 00000 000000011111121 23444433222 22222 22222334555677777765 699999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhcc
Q 035548 320 LSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWS 399 (518)
Q Consensus 320 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (518)
....+..++..++.++.|++.||+|+|+.+..+..+..++.+++.... .....+.......+.+.+.+..
T Consensus 299 ~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~----------~~~~~~~~~~~~~l~G~g~g~~ 368 (495)
T PRK14995 299 MFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTD----------FSTQQWQAWGLMALLGFSAASA 368 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhc----------CCCchHHHHHHHHHHHHhHHHH
Confidence 999999999999999999999999999988777776666655544321 1122333333444445554443
Q ss_pred ccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhc
Q 035548 400 WGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCK 445 (518)
Q Consensus 400 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 445 (518)
.. .......+..|++.++.+.++.+....+|+.+++.+.+.+.+.
T Consensus 369 ~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 369 LL-ASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred HH-HHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 3334567888999999999999999999999999999998764
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=270.01 Aligned_cols=372 Identities=13% Similarity=0.074 Sum_probs=237.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhc----cHHHHHHHHHHhhhhhhccc
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQ----NLGMLIAGRLSLGIGVGFGN 150 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~----~~~~l~~~r~l~G~~~g~~~ 150 (518)
|++..+.+++.+++.+++.++++++|+++||+|||++++++.++.+++.+++++++ +++.+++.|++.|++.+...
T Consensus 59 g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~ 138 (452)
T PRK11273 59 GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGW 138 (452)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccc
Confidence 78999999999999999999999999999999999999999999999999888763 78889999999999999998
Q ss_pred chhhhHHHhcCCCCcchhHHhHHHHHHHHHH-HHHHHHHhhccccCCCcchHHHHhhhHHHHHH-HHHhhcccCChhhHH
Q 035548 151 QAVPLFISEIAPPKYRGGLNICFQLLITVGI-LAANLINYGTSRIHPYGWRISLGGAAVPALFL-LLGSCIIVETPASLI 228 (518)
Q Consensus 151 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~ 228 (518)
+.....+.|++|+++|++++++++.+.++|. +.+++++...... .+||+.|++.+++.++. ++..++++|+|+...
T Consensus 139 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~--~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~ 216 (452)
T PRK11273 139 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWF--NDWHAALYMPAFAAILVALFAFAMMRDTPQSCG 216 (452)
T ss_pred hHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcC
Confidence 8888899999999999999999999999886 4555543333222 38999999988876664 455566788775321
Q ss_pred hcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcc--cCChhHHHHHHHHHHHHHhhchhHHHHhHHH
Q 035548 229 ERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMK--KSSRPQLICGTFIHMLQQLTGINVVMFYAPV 306 (518)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (518)
.+. .++.. ++. . + ..+.+++++.+.++.++ ..+.+..+......++. ....+....|.|.
T Consensus 217 ~~~-~~~~~---~~~---~---~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~P~ 278 (452)
T PRK11273 217 LPP-IEEYK---NDY---P---D-------DYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFV-YLLRYGILDWSPT 278 (452)
T ss_pred CCC-hhhhh---hcc---c---c-------ccccccCCCccHHHHHHHHHHcChHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 111 01000 000 0 0 00000000111222111 11122222222222222 2233456678888
Q ss_pred HHHH-cCCCChHHHHHHHHHHHHHHHHhhhhhhhhhcc--CChHHHHH-hHHHHHHHHHHHHHHHHHhcccCCCCCCchh
Q 035548 307 LFQT-MGYGSNASLLSAVISGTINVASTLVAIVLVDKA--GRKILLVQ-AAIQMIICQCAIGVILKMFLLTTNTMPTVPA 382 (518)
Q Consensus 307 ~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (518)
++++ .|++..+++.......++.+++.++.|+++||+ +||+...+ ...+..++...+... ...+.
T Consensus 279 ~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~-----------~~~~~ 347 (452)
T PRK11273 279 YLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLN-----------PAGNP 347 (452)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHh-----------cccCh
Confidence 8865 689988888888888999999999999999998 44443222 111122222211110 11122
Q ss_pred HHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHH-HHHHhHHHHhccchhhHH-HHHHHHHH
Q 035548 383 KVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFV-IAQAFLSMLCKMRWGIFF-FFTGWLLI 460 (518)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~ 460 (518)
+.........+.... ........+..|.+|++.||++.|+.+...++++.+ +|.+.|.+.|+.++...+ +..+++++
T Consensus 348 ~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~ 426 (452)
T PRK11273 348 TVDMACMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSIL 426 (452)
T ss_pred HHHHHHHHHHHHHHH-hHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHH
Confidence 222222222222111 111122234679999999999999999999888765 799999999998865444 44444444
Q ss_pred HHHHHHhcccCCCCCCHHH
Q 035548 461 SLIFSATMLPETKGIPIDE 479 (518)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~ 479 (518)
+.+... .....++|+.+|
T Consensus 427 ~~~~~~-~~~~~~~~~~~~ 444 (452)
T PRK11273 427 AVILLI-VVMIGEKRHHEE 444 (452)
T ss_pred HHHHHH-HHhccccchHHH
Confidence 433333 333333343333
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-32 Score=262.11 Aligned_cols=353 Identities=14% Similarity=0.088 Sum_probs=245.0
Q ss_pred HHHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhcc
Q 035548 29 IAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGR 108 (518)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Gr 108 (518)
...++.+..+.......+.. |.+.+++ |++..+.|++.+++.+++.++++++|+++||+||
T Consensus 7 ~~~~~~~~~~~~~~~~~~~l--~~~~~~~-----------------g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~ 67 (382)
T PRK10091 7 SLALGTFGLGMAEFGIMGVL--TELAHDV-----------------GISIPAAGHMISYYALGVVVGAPIIALFSSRYSL 67 (382)
T ss_pred HHHHHHHHHHhhHHHHHhCh--HHHHHHc-----------------CCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCcc
Confidence 33444555566655555433 6777766 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHH
Q 035548 109 KPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLIN 188 (518)
Q Consensus 109 r~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~ 188 (518)
|+++..+.++.+++.+++++++|++.+++.|++.|++.+...+....++.|++++++|++++++...+..+|..++++++
T Consensus 68 r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~ 147 (382)
T PRK10091 68 KHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLG 147 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHH
Confidence 99999999999999999999999999999999999999998888899999999999999999999999999999999987
Q ss_pred hhccccCCCcchHHHHhhhHHHHHHHH-HhhcccCChhhHHhcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccc
Q 035548 189 YGTSRIHPYGWRISLGGAAVPALFLLL-GSCIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIK 267 (518)
Q Consensus 189 ~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (518)
+.+.. ..+||+.|++.+++.++..+ ...++||.++. .+ .+ . +
T Consensus 148 ~~l~~--~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~----~~-~~-------------~-----------------~ 190 (382)
T PRK10091 148 TYLSQ--EFSWRYTFLLIAVFNIAVLASIYFWVPDIRDE----AK-GG-------------L-----------------R 190 (382)
T ss_pred HHHhh--hccHHHHHHHHHHHHHHHHHHHHHhCCCCCcc----cc-cC-------------H-----------------H
Confidence 66543 35899999998887766444 34456664310 00 00 0 0
Q ss_pred cchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHh-HHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCCh
Q 035548 268 HPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFY-APVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRK 346 (518)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~ 346 (518)
..+ +.++++ +.+.......... ........+ .|++.+..|+++.+.+.......++.++++++.+++.||+++|
T Consensus 191 ~~~-~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~ 265 (382)
T PRK10091 191 EQF-HFLRSP---APWLIFAATMFGN-AGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPL 265 (382)
T ss_pred HHH-HHhcCh---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCch
Confidence 000 111211 1122221111211 112222333 3444455799999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHH
Q 035548 347 ILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVS 426 (518)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~ 426 (518)
+.+..+..+..++.+++.... ...+.......+...+......+.......+..+.+.++.+ ..+.
T Consensus 266 ~~~~~~~~~~~i~~~~~~~~~------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 331 (382)
T PRK10091 266 RIAAVTDFIIVLALLMLFFFG------------GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQI 331 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHH------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHH
Confidence 988877776666655443321 11222233333333332222222222333444555555544 3467
Q ss_pred HHHHHHHHHHHHhHHHHhcc-chhhHHHHHH
Q 035548 427 TNMVFTFVIAQAFLSMLCKM-RWGIFFFFTG 456 (518)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 456 (518)
...+|..++|.+.|.+.|.. ++...+...+
T Consensus 332 ~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~ 362 (382)
T PRK10091 332 AFNLGSAIGAYCGGMMLTLGLAYNYVALPAA 362 (382)
T ss_pred HHHHHHHHHHHHhHHHHHcccCcchHHHHHH
Confidence 78899999999999999964 4544444443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=257.81 Aligned_cols=363 Identities=13% Similarity=0.130 Sum_probs=250.7
Q ss_pred hHHHHHHHHHHHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHHHHHHHHHhh
Q 035548 20 TGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLA 99 (518)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~ 99 (518)
+++.|.....+.++.+....+.....+ .+|++.+++ |+++.+.++..+++.++..+++++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~-----------------g~s~~~~g~~~~~~~~~~~~~~~~~ 75 (394)
T PRK10213 15 TRPNWSAVFSVAFCVACLIIVEFLPVS--LLTPMAQDL-----------------GISEGVAGQSVTVTAFVAMFASLFI 75 (394)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHc-----------------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555554444443322222 236666666 9999999999999999999999999
Q ss_pred HHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchhHHhHHHHHHHH
Q 035548 100 SIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITV 179 (518)
Q Consensus 100 G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 179 (518)
|+++||+|||+++..+.++.+++.+++.++++++.+++.|+++|++.+...+...+++.|++|+++|+++.++...+.++
T Consensus 76 g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~ 155 (394)
T PRK10213 76 TQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSI 155 (394)
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHh-hcccCChhhHHhcCChhHHHHHHHhhhCCccHHHHHHHHHH
Q 035548 180 GILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGS-CIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICR 258 (518)
Q Consensus 180 G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 258 (518)
|..++|.+++.+.. .+|||+.|++.++++++..+.. ...||.|+. .++
T Consensus 156 g~~ig~~l~~~l~~--~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~------~~~----------------------- 204 (394)
T PRK10213 156 ALVIAAPLGSFLGE--LIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGE------PSH----------------------- 204 (394)
T ss_pred HHHHHHHHHHHHHh--hcCHHHHHHHHHHHHHHHHHHHHHHCCCCCcc------ccc-----------------------
Confidence 99999999877654 3689999999887766644433 335654310 000
Q ss_pred HHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHh-HHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhh
Q 035548 259 ATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFY-APVLFQTMGYGSNASLLSAVISGTINVASTLVAI 337 (518)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 337 (518)
...+..+.++++ +.+......+.. .........+ .|.+.++.|++..+.+......+++.+++.++.+
T Consensus 205 -------~~~~~~~~l~~~---~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~ 273 (394)
T PRK10213 205 -------QKQNTFRLLQRP---GVMAGMIAIFMS-FAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSS 273 (394)
T ss_pred -------chhHHHHHhcCH---HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 000112233322 222222221121 1222233334 5777788899999999999999999999999999
Q ss_pred hhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhh
Q 035548 338 VLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETR 417 (518)
Q Consensus 338 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r 417 (518)
++.||.+ |+.+..+..+.....+.+... ....+.......+.+.++... .+....++.+..|+ .+
T Consensus 274 ~l~~r~~-~~~l~~~~~~~~~~~~~l~~~------------~~~~~~~~~~~~l~G~~~~~~-~~~~~~~~~~~~~~-~~ 338 (394)
T PRK10213 274 FILKRSV-KLALAGAPLVLAVSALVLTLW------------GSDKIVATGVAIIWGLTFALV-PVGWSTWITRSLAD-QA 338 (394)
T ss_pred HHHhccc-hhHHHHHHHHHHHHHHHHHHH------------hhhHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHCcc-cH
Confidence 9999954 444333333323332222221 122333333444444444332 23333455666764 45
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHH
Q 035548 418 NAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFFTGWL 458 (518)
Q Consensus 418 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (518)
+...++.....+++..+++.+.|.+.|..++...+..+++.
T Consensus 339 ~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~ 379 (394)
T PRK10213 339 EKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTL 379 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHH
Confidence 67777777888999999999999999988866555554433
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-33 Score=267.79 Aligned_cols=337 Identities=15% Similarity=0.117 Sum_probs=242.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhh
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVP 154 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (518)
|++..+.|++.+++.+++.+++++.|+++||+|||+++..+.++.+++.+++++++|++.++++|++.|++.+...+...
T Consensus 34 ~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 113 (377)
T TIGR00890 34 GVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIAL 113 (377)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred hHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhh-cccCChhhHHhcCCh
Q 035548 155 LFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSC-IIVETPASLIERGKQ 233 (518)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e~p~~~~~~~~~ 233 (518)
..+.+++| ++|+++.++...+.++|..+++++..... +..+||+.|++.+++.++..+..+ +++++|+.. .+++.
T Consensus 114 ~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 189 (377)
T TIGR00890 114 NTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVI--NLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQL-IKTNI 189 (377)
T ss_pred HHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHH--hcccHHHHHHHHHHHHHHHHHHHHHheecCchhc-cccCc
Confidence 89999987 56999999999999999887665544332 235899999999888777655544 444433210 00000
Q ss_pred hHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCC
Q 035548 234 EQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQTMGY 313 (518)
Q Consensus 234 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 313 (518)
+ . ++++.+.++.++++..+......... .........+.+.+.++.|.
T Consensus 190 ~--------------~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 237 (377)
T TIGR00890 190 E--------------V--------------SVKDYTVWEMLRTPQFWVLYLSFFLN----AVSGLLLIGLYKPYGQSLGL 237 (377)
T ss_pred c--------------c--------------chhhhhHHHHHcCccHHHHHHHHHHH----hHHHHHHHHHHHHHHHHcCC
Confidence 0 0 00011122333333332222222111 11222333445556677888
Q ss_pred CChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHH
Q 035548 314 GSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFV 393 (518)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (518)
+..+.+.......++.++++++.+++.||++||+.+..+..+..++.+.+... +.......+....+.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~g 306 (377)
T TIGR00890 238 SDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFI-----------PMLNDVLFLATVALVF 306 (377)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHc-----------ccchhHHHHHHHHHHH
Confidence 88888899999999999999999999999999999887777766666554432 1112222222222333
Q ss_pred HhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHH
Q 035548 394 AGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLL 459 (518)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (518)
.+.+.. .+....+..|.+|++.|+++.|+.+....++..++|.+.|.+.+..++...+...+++.
T Consensus 307 ~~~g~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~ 371 (377)
T TIGR00890 307 FTWGGT-ISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFA 371 (377)
T ss_pred HHhccc-hhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHH
Confidence 333222 23334567899999999999999999999999999999999999888665544444333
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=267.03 Aligned_cols=384 Identities=15% Similarity=0.183 Sum_probs=265.2
Q ss_pred HHHHHHHHHHHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHHHHHHHHHhhH
Q 035548 21 GQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLAS 100 (518)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~G 100 (518)
++.+.....+.+..+..+++....++. .|.+.+++ |.+..+.+++.+.+.++..+++++.|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~g 73 (398)
T TIGR00895 13 RYQWRAIILSFLIMLMDGYDLAAMGFA--APAISAEW-----------------GLDPVQLGFLFSAGLIGMAFGALFFG 73 (398)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHhhcc-----------------CCCHHHHHHHHHHHHHHHHHHHHHhH
Confidence 334445555555666777776655533 35555554 88999999999999999999999999
Q ss_pred HhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchhHHhHHHHHHHHH
Q 035548 101 IVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVG 180 (518)
Q Consensus 101 ~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 180 (518)
+++||+|||+++..+.++.+++.+++.++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|
T Consensus 74 ~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 153 (398)
T TIGR00895 74 PLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIG 153 (398)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccCCCcchHHHHhhhHHHHH-HHHHhhcccCChhhHHhcCChhHHHHHHHhhhCCccHHHHHHHHHHH
Q 035548 181 ILAANLINYGTSRIHPYGWRISLGGAAVPALF-LLLGSCIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRA 259 (518)
Q Consensus 181 ~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 259 (518)
..+++.+++.+.. ..+||+.|++.++..++ ..+...++||++++..++ +.++..+..++.......+.+. +..+.
T Consensus 154 ~~~~~~~~~~l~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 229 (398)
T TIGR00895 154 AAVGGFLAGWLIP--VFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQS-ALPEQ 229 (398)
T ss_pred HHHHHHHHHHHhh--cccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccccc-ccccc
Confidence 9999999766543 35899999888655554 445566788887765544 3333333222221111000000 00000
Q ss_pred HHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhh
Q 035548 260 TEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVL 339 (518)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l 339 (518)
.+.++..+...+..++.+..++..... +..+...........+.|++.++.|++..+.+.......++.+++.++.+++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l 308 (398)
T TIGR00895 230 KATQGTKRSVFKALFQGKTARITVLLW-LLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWL 308 (398)
T ss_pred ccccchhhHHHHHHhcchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000011122233333333322222 2222333445566777888888889999999999999999999999999999
Q ss_pred hhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhh
Q 035548 340 VDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNA 419 (518)
Q Consensus 340 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~ 419 (518)
.||+++|+... ...+..+...++... ..+.+......++.+.+.+.. .+....+..|.+|++.|++
T Consensus 309 ~~~~~~~~~~~-~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~ 374 (398)
T TIGR00895 309 ADRLGPRVTAL-LLLLGAVFAVLVGST------------LFSPTLLLLLGAIAGFFVNGG-QSGLYALMALFYPTAIRAT 374 (398)
T ss_pred HhhcchHHHHH-HHHHHHHHHHHHHHH------------hhCHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcCCHHHHHH
Confidence 99999984443 333333332222221 112223333333444443333 3455677899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Q 035548 420 GYFFAVSTNMVFTFVIAQAFLSM 442 (518)
Q Consensus 420 ~~g~~~~~~~~~~~~~~~~~~~~ 442 (518)
+.|+.+....++..++|.+.|.+
T Consensus 375 ~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 375 GVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhc
Confidence 99999999999999999998875
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=267.57 Aligned_cols=360 Identities=14% Similarity=0.081 Sum_probs=246.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhh
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVP 154 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (518)
|++..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++++++++++.++++|++.|++.+...+...
T Consensus 25 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 104 (399)
T TIGR00893 25 GLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGII 104 (399)
T ss_pred CCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHh-hcccCChhhHHhcCCh
Q 035548 155 LFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGS-CIIVETPASLIERGKQ 233 (518)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~ 233 (518)
+++.|++|+++|++++++.+....+|.++++.+++.+.. ..+||+.|++.+++.++..+.. ++.+|+|+... ..+.
T Consensus 105 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 181 (399)
T TIGR00893 105 LIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILI--HFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAK-WLTE 181 (399)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH--hCCchHHHHHHHHHHHHHHHHhhheecCCCCccc-cCCH
Confidence 999999999999999999999999999999999776543 3589999999888877755444 44555543110 0011
Q ss_pred hHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHH-HcC
Q 035548 234 EQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQ-TMG 312 (518)
Q Consensus 234 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g 312 (518)
++.....++.. .+ .+..+.++......++.+++ ++.+... +..+...........+.|.+++ ..|
T Consensus 182 ~~~~~~~~~~~---------~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (399)
T TIGR00893 182 EEKYIVVGGLL---------AE-QQGKGPSTPKKYQIKELLKD---RRVWGLA-LGQFLVNIGLGFFLTWFPTYLVQERG 247 (399)
T ss_pred HHHhhcchhhc---------cc-cccccccCCCccchHHHhcC---HHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHhc
Confidence 11000000000 00 00000111112223333332 3333322 3333333345566667777764 568
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHH-HhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHH
Q 035548 313 YGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLV-QAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCV 391 (518)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (518)
.+..+.+.......++.+++.++.+++.||++||+... .......++.+......... ..............
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 320 (399)
T TIGR00893 248 LSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFAT-------NYVNIPYAALALVA 320 (399)
T ss_pred ccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHh-------ccchhHHHHHHHHH
Confidence 88889999999999999999999999999999986211 11111111111111111000 11112222222222
Q ss_pred HHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccc-hhhHHHHHHHHH
Q 035548 392 FVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMR-WGIFFFFTGWLL 459 (518)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 459 (518)
.. +...+..+..+.+..|.+|++.|+++.|+.+....++..++|.+.|.+.+..+ +...+.+.++..
T Consensus 321 ~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~ 388 (399)
T TIGR00893 321 LG-FFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALA 388 (399)
T ss_pred HH-HhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHH
Confidence 22 22222456777888999999999999999999999999999999999999887 554444444333
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-32 Score=261.51 Aligned_cols=364 Identities=9% Similarity=0.028 Sum_probs=255.3
Q ss_pred HHHHHHHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhh
Q 035548 25 VCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLASIVCR 104 (518)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~d 104 (518)
.....+.++.++.+.+....+.+. |++.+++ |+|..+.+++.+.+.+++.+++++.|++.|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~g~~~--~~i~~~~-----------------~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d 67 (394)
T PRK03699 7 KLTWISFLSYALTGALVIVTGMVM--GPIAEYF-----------------NLPVSSMSNTFTFLNAGILISIFLNAWLME 67 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHh-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566677888776666444 7777776 899999999999999999999999999999
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHH
Q 035548 105 KFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAA 184 (518)
Q Consensus 105 r~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~ 184 (518)
|+|||+++..+.++.+++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|+++++..+....+|..++
T Consensus 68 r~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~ 147 (394)
T PRK03699 68 IIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIF 147 (394)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred HHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccCChhhHHhcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhc
Q 035548 185 NLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISN 264 (518)
Q Consensus 185 ~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (518)
|.+.+.+.. ...+||+.|.+.+++.++..+..++ .+.|+. ++.+ + + ++
T Consensus 148 ~~~~~~l~~-~~~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~--~~~~-~--------------------------~-~~ 195 (394)
T PRK03699 148 PIIAAYLLA-RSIEWYWVYACIGLVYVAIFILTLF-SEFPAL--GKHA-P--------------------------K-AD 195 (394)
T ss_pred HHHHHHHHh-ccccHHHHHHHHHHHHHHHHHHHHh-cCCccc--cccC-c--------------------------c-cc
Confidence 888655432 2358999999888877665444332 222210 0000 0 0 00
Q ss_pred ccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHH-HHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 035548 265 LIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLF-QTMGYGSNASLLSAVISGTINVASTLVAIVLVDKA 343 (518)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 343 (518)
+.. .+....++.+. ..+..+........+..|.|.++ +++|++..+.+.......++..+++++.++++||+
T Consensus 196 --~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~ 268 (394)
T PRK03699 196 --KPV----AKEKWGIGVLF-LAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF 268 (394)
T ss_pred --Ccc----ccccCChHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 000 01111222222 22222222333455667888888 45699999999999999999999999999999999
Q ss_pred CChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHH
Q 035548 344 GRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFF 423 (518)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~ 423 (518)
++|+.+.....+..+...++.. .. +.+......+..+.+.. ...+....+..|..|.+ ++...+.
T Consensus 269 ~~~~~l~~~~~~~~~~~~~~~~------------~~-~~~~~~~~~~~~G~~~~-~~~~~~~~~~~~~~~~~-~~~~~g~ 333 (394)
T PRK03699 269 DLQRILTVLAGLALVLMYLFVN------------TD-DPSHLLYAILGLGFFSS-AIYTTIITLGSQQTKVA-SPKLVNF 333 (394)
T ss_pred chhhHHHHHHHHHHHHHHHHHH------------cC-CchHHHHHHHHHHHHHH-HHHHHHHHHHHHHccCC-CHHHHHH
Confidence 9999887665554444333322 11 22222222333333222 22233334455666543 4677888
Q ss_pred HHHHHHHHHHHHHHHhHHHHhccchhhHH-HHHHHHHHH
Q 035548 424 AVSTNMVFTFVIAQAFLSMLCKMRWGIFF-FFTGWLLIS 461 (518)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 461 (518)
......+|..++|.+.|.+.+..++...+ ...+++.++
T Consensus 334 ~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~ 372 (394)
T PRK03699 334 ILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVV 372 (394)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHH
Confidence 88889999999999999999988855443 333333333
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=268.67 Aligned_cols=388 Identities=20% Similarity=0.195 Sum_probs=281.0
Q ss_pred cccCCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccc
Q 035548 72 NYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQ 151 (518)
Q Consensus 72 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 151 (518)
+.++.+.....+..+++++|..+|++++|+++||+|||+++++++++..++.++.++++|++.+++.|++.|++.++...
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~ 190 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLT 190 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhH
Confidence 33477889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccCChhhHHhcC
Q 035548 152 AVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERG 231 (518)
Q Consensus 152 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~ 231 (518)
....++.|++++++|+.+..+ ......|..+++.+++.+.. +||+.+++..+++++.++.+++.+|+|||+..++
T Consensus 191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~----~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g 265 (521)
T KOG0255|consen 191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR----DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKG 265 (521)
T ss_pred HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcC
Confidence 999999999999999999999 66666666666665555543 7999999999999988777777779999999999
Q ss_pred ChhHHHHHHHhhhCCc----cHHHHHHHH-HHH--HHhhcccccchhhhcccCC-hhHHHHHHHHHHHHHhhchhHHHHh
Q 035548 232 KQEQGLYTLRKIRGVK----DVEKEYAEI-CRA--TEISNLIKHPYRSLMKKSS-RPQLICGTFIHMLQQLTGINVVMFY 303 (518)
Q Consensus 232 ~~~~a~~~~~~~~~~~----~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (518)
+.+++.+.+++..+.+ +.+...... ..+ .....+++..+.++++.+. +++.....+.. +.. ....+-
T Consensus 266 ~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~-~~~----~~~y~g 340 (521)
T KOG0255|consen 266 RIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIW-FVF----SLVYYG 340 (521)
T ss_pred chHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHH-HHH----hHHHHh
Confidence 9999999999886543 111111111 111 1111122345666666553 33333322222 111 111112
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhH
Q 035548 304 APVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAK 383 (518)
Q Consensus 304 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (518)
.+.....+|.+ ........+.....+....+...|+.|||.....+.....++++..++... ....+
T Consensus 341 l~~~~~~lg~~---~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ 407 (521)
T KOG0255|consen 341 LSLNVSGLGGN---IYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPD----------DLGGW 407 (521)
T ss_pred hhhhhhhcCch---HHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhc----------cchhH
Confidence 22222333332 234445555577788888899999999999999999999998888887642 11112
Q ss_pred HHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHHHH
Q 035548 384 VVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLISLI 463 (518)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (518)
.......+..++...++. ..+.+..|++|+..|+.+.+..+....++++++|.+...............++....+.+.
T Consensus 408 ~~~~~~~~~~~~~~~~~~-~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~~ 486 (521)
T KOG0255|consen 408 LHWILPLLGKFFIGSAFN-LIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLLGL 486 (521)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Confidence 333333333344444443 3367889999999999999999999999999999988655442222222224666667777
Q ss_pred HHHhcccCCCCCCHHHHHHH
Q 035548 464 FSATMLPETKGIPIDEMVDR 483 (518)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~ 483 (518)
+...++||++++.+.+..++
T Consensus 487 ~~~~~lpet~~~~l~~t~~~ 506 (521)
T KOG0255|consen 487 LSLLLLPETKGKPLPGTLLD 506 (521)
T ss_pred HHHhcCcccCCCCCchhHHH
Confidence 77788999999998766533
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=270.58 Aligned_cols=347 Identities=11% Similarity=0.083 Sum_probs=231.2
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHH-HHHHhhhhhhcccchh
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIA-GRLSLGIGVGFGNQAV 153 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~-~r~l~G~~~g~~~~~~ 153 (518)
|++.++.+++.+.+.++..++.++.|+++||+|||++++.+.++.+++.++++++++++.+++ .|+++|++.+...+..
T Consensus 50 g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~ 129 (455)
T TIGR00892 50 QATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPS 129 (455)
T ss_pred CcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHH
Confidence 999999999999999999999999999999999999999999999999999999999998875 4799999999877788
Q ss_pred hhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccCChhhHHhcCCh
Q 035548 154 PLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQ 233 (518)
Q Consensus 154 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~ 233 (518)
.+++.++++ ++|+++.++.+.+..+|..++|.+++.+.. ..|||+.|++.+++.++..+..+++.+.+... .+.+.
T Consensus 130 ~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~--~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~ 205 (455)
T TIGR00892 130 LTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFE--SFGWRGSFLILGGLLLHCCVCGALMRPVGPSQ-RVSKS 205 (455)
T ss_pred HHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHH--HhChHHHHHHHHHHHHHHHHHHHHhCCCCccc-ccccc
Confidence 888999996 679999999999999999999998766543 35899999999988776554444433222100 00000
Q ss_pred hHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCC
Q 035548 234 EQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQTMGY 313 (518)
Q Consensus 234 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 313 (518)
++. +.....+..++. + .....++..+....+.++++ ..+... ...+.....+.....+.+.+.++.|+
T Consensus 206 ~~~----~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~l~~~~~~~~~~~l~~~~~~~g~ 273 (455)
T TIGR00892 206 KSK----EGLPPDGSTKKL--S--KKSTAEKINRFLDFSLFTHR---GFLVYL-SGNVIMFLGFFAPIIFLVPYAKDKGV 273 (455)
T ss_pred ccc----ccCCCCCccccc--c--ccchhhhhhhhcchHHhcCc---hHHHHH-HHHHHHHHHccchHHHHHHHHHHcCC
Confidence 000 000000000000 0 00000000000001233332 222222 22222223334455677777788899
Q ss_pred CChHHHHHHHHHHHHHHHHhhhhhhhhhcc--CChHHHHHhHHHH--HHHHHHHHHHHHHhcccCCCCCCchhHHHHHHH
Q 035548 314 GSNASLLSAVISGTINVASTLVAIVLVDKA--GRKILLVQAAIQM--IICQCAIGVILKMFLLTTNTMPTVPAKVVVILV 389 (518)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (518)
+..+++...++.+++.++++++.+++.||. ++|+...+..... +++.+++.. ..+.+..+...
T Consensus 274 s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~-------------~~~~~~~~i~~ 340 (455)
T TIGR00892 274 DEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCAL-------------AGDYTGLVIYC 340 (455)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHH-------------hchHHHHHHHH
Confidence 999999999999999999999999999973 3343333322222 222222111 12233333334
Q ss_pred HHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccc-hhhH
Q 035548 390 CVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMR-WGIF 451 (518)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 451 (518)
.+.+.+.+. ..+....++.|.+|++.+++++|+.+....++.+++|.+.|.+.+..+ +...
T Consensus 341 ~~~G~~~g~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~ 402 (455)
T TIGR00892 341 IFFGLSFGS-VGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYI 402 (455)
T ss_pred HHHHHHhch-HHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchH
Confidence 444444332 234455667899999999999999999999999999999999998775 5433
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-31 Score=257.89 Aligned_cols=338 Identities=14% Similarity=0.089 Sum_probs=235.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhh--------ccHHHHHHHHHHhhhhh
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLA--------QNLGMLIAGRLSLGIGV 146 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~--------~~~~~l~~~r~l~G~~~ 146 (518)
|.|+.+.|++.+++.+++.+++++.|+++||+|||+++..+.++.+++.+.+.++ .+++.+++.|+++|++.
T Consensus 47 g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 126 (399)
T PRK05122 47 GFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGE 126 (399)
T ss_pred CccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhH
Confidence 8999999999999999999999999999999999999999999888877665543 25678999999999999
Q ss_pred hcccchhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccCChhh
Q 035548 147 GFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPAS 226 (518)
Q Consensus 147 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~ 226 (518)
+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+.. ..|||+.+++.++..++..+.....|++++.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (399)
T PRK05122 127 SLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYH--WGGLAGLGLLIMLLALLGLLLARPRPAVPPV 204 (399)
T ss_pred HhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHH--cccHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 99999999999999999999999999999999999999999766643 3689999887776655444333333332210
Q ss_pred HHhcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHH
Q 035548 227 LIERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPV 306 (518)
Q Consensus 227 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (518)
+ ++ +.++++.++.. +.......+. ...+.....+.+.
T Consensus 205 ---~---~~-------------------------------~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~ 241 (399)
T PRK05122 205 ---K---GE-------------------------------RLPFRRVLGRV--WPYGMGLALA----SIGFGTIATFITL 241 (399)
T ss_pred ---C---cc-------------------------------chhHHHHHHHH--HHHHHHHHHH----HHHHHHHHHHHHH
Confidence 0 00 00111111110 1111111111 1123344556666
Q ss_pred HHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHH
Q 035548 307 LFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVV 386 (518)
Q Consensus 307 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (518)
+.++.|++ +.+.......++.+++.++.+++.||+++|+.+..+..+..++..++... .+.+..+
T Consensus 242 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~ 306 (399)
T PRK05122 242 YYAARGWD--GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA-------------PSPWMAL 306 (399)
T ss_pred HHHHcccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh-------------ccHHHHH
Confidence 66666663 44566677888889999999999999999998887777666665554431 1223333
Q ss_pred HHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHHHHHHH
Q 035548 387 ILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLISLIFSA 466 (518)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (518)
....+.+.+.+... +.......|..|++.|+++.|+.+....++..+++.+.|.+.+..++...+...+++.+.+++..
T Consensus 307 ~~~~l~G~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 385 (399)
T PRK05122 307 IGAALTGFGFSLVF-PALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALT 385 (399)
T ss_pred HHHHHHHHhHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 33344444443322 33334556888999999999999999999999999999999998886655444444444444444
Q ss_pred hcccCCC
Q 035548 467 TMLPETK 473 (518)
Q Consensus 467 ~~~~~~~ 473 (518)
.+.++++
T Consensus 386 ~~~~~~~ 392 (399)
T PRK05122 386 WLLYRRA 392 (399)
T ss_pred HHhcccc
Confidence 4444433
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-31 Score=257.61 Aligned_cols=379 Identities=14% Similarity=0.078 Sum_probs=267.7
Q ss_pred chHHHHHHHHHHHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHHHHHHHHHh
Q 035548 19 LTGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFL 98 (518)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~ 98 (518)
.+++.++....+.++.+...++...+.+. +|.+.+++ |.+..+.++..+.+.+++.+++++
T Consensus 7 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~-----------------~~s~~~~~~~~~~~~~~~~~~~~~ 67 (406)
T PRK15402 7 LGRQALLFPLCLVLFEFATYIANDMIQPG--MLAVVEDF-----------------NAGAEWVPTSMTAYLAGGMFLQWL 67 (406)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhHhcc--hHHHHHHh-----------------CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777888888877777776654 36777777 899999999999999999999999
Q ss_pred hHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchhHHhHHHHHHH
Q 035548 99 ASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLIT 178 (518)
Q Consensus 99 ~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 178 (518)
.|+++||+|||+++..+..+.+++.+++.++++++.+++.|+++|++.+...+...+++.|++|+++|.++.++......
T Consensus 68 ~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 147 (406)
T PRK15402 68 LGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVAL 147 (406)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998889999999999999999999999988888
Q ss_pred HHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHH-hhcccCChhhHHhcCChhHHHHHHHhhhCCccHHHHHHHHH
Q 035548 179 VGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLG-SCIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAEIC 257 (518)
Q Consensus 179 ~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 257 (518)
+|..++|.+++.+.. ..+||+.|++.++..++..+. ....||+++... +..+ ..+
T Consensus 148 ~~~~~g~~i~~~l~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-----------------~~~-- 203 (406)
T PRK15402 148 LAPLLGPLVGAALIH--VLPWRGMFVLFAALAALSFFGLWRAMPETAGRVG---EKLS-----------------LKE-- 203 (406)
T ss_pred HHHHHHHHHHHHHHH--ccCccHHHHHHHHHHHHHHHHHHHhCCCCCcccc---cccc-----------------HHH--
Confidence 999999999766543 358999999888877765543 344666542100 0000 000
Q ss_pred HHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHH-HHcCCCChHHHHHHHHHHHHHHHHhhhh
Q 035548 258 RATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLF-QTMGYGSNASLLSAVISGTINVASTLVA 336 (518)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 336 (518)
...++++.++++..+ .......+.. ........+.|.++ +..|+++.+.+.......++.+++.++.
T Consensus 204 --------~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~ 271 (406)
T PRK15402 204 --------LGRDYKLVLKNRRFV---AGALALGLVS-LPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTL 271 (406)
T ss_pred --------HHHHHHHHHcCcHHH---HHHHHHHHHH-HHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 011123333333222 2222211111 12223344456665 5579998888888887888899999999
Q ss_pred hhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhh
Q 035548 337 IVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLET 416 (518)
Q Consensus 337 g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 416 (518)
+++.||+++|+.+..+.....++..++...... .....++......+.+.+.+... +....... ..+++.
T Consensus 272 g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~~~~~g~g~~~~~-~~~~~~~~-~~~~~~ 341 (406)
T PRK15402 272 ARLTSRRPLRSLIRMGLWPMVAGLLLAALATVI--------SSHAYLWLTAGLSLYAFGIGLAN-AGLYRLTL-FSSDVS 341 (406)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHc--------ccccHHHHHHHHHHHHHHHHHHh-hhHHHHHh-hhcccc
Confidence 999999999998888777666666655543210 11222333333444444443322 22222222 234478
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHHH
Q 035548 417 RNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLISL 462 (518)
Q Consensus 417 r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (518)
+|+..++.+....++..+++.+.+.+.+..+...+....+++.+..
T Consensus 342 ~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 342 KGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence 8999999999999999999999999988877554444444443333
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-31 Score=251.22 Aligned_cols=347 Identities=14% Similarity=0.036 Sum_probs=237.2
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhh-----ccHHHHHHHHHHhhhhhh
Q 035548 73 YCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLA-----QNLGMLIAGRLSLGIGVG 147 (518)
Q Consensus 73 ~~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~g 147 (518)
++|+|++|.+++.+++.+++.++.++.|++.||+|.|+++.++.+++++.+++++++ ++++.+++.|++.|++ +
T Consensus 64 ~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g 142 (462)
T PRK15034 64 GFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-G 142 (462)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-H
Confidence 349999999999999999999999999999999999999999999999999999987 8999999999999998 7
Q ss_pred cccchhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhcc-----c-----------cCCCcchHHHHhhhHHHH
Q 035548 148 FGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTS-----R-----------IHPYGWRISLGGAAVPAL 211 (518)
Q Consensus 148 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~-----~-----------~~~~~wr~~f~~~~~~~~ 211 (518)
..++.....+++|+|+++||+++++.....++|..+++++...+. . .+..+||...++..++.+
T Consensus 143 ~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~i 222 (462)
T PRK15034 143 ANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLA 222 (462)
T ss_pred HhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHH
Confidence 788999999999999999999999997666666665554432211 0 012458888888888777
Q ss_pred HHHHHhhcccCChhhHHhcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHH
Q 035548 212 FLLLGSCIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHML 291 (518)
Q Consensus 212 ~~~~~~~~~~e~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (518)
+..++.++..++++. ++.......+.+|++..|. ...++ +
T Consensus 223 v~~i~~~~~~~~~~~------------------------------------~~~~~~~~~~vlk~~~~Wl---lslly-~ 262 (462)
T PRK15034 223 IATIAAWSGMNDIAS------------------------------------SRASIADQLPVLQRLHLWL---LSLLY-L 262 (462)
T ss_pred HHHHHHHHhCCCccc------------------------------------cccCHHHHHHHhCCCchhH---HHHHH-H
Confidence 765555544333210 0000111233444444333 33332 3
Q ss_pred HHhhchhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhc
Q 035548 292 QQLTGINVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFL 371 (518)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (518)
+.+..+..+..+.|++.++ .++.........+..+...+.++++|+++||+|+++++.++.+.+.++...+......
T Consensus 263 ~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~-- 339 (462)
T PRK15034 263 ATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPG-- 339 (462)
T ss_pred HHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhcc--
Confidence 3344566677788888765 3443333333455567888899999999999999999988887776665443332210
Q ss_pred ccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCCh---------------------hhhhhHHHHHHHHHHH
Q 035548 372 LTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPL---------------------ETRNAGYFFAVSTNMV 430 (518)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---------------------~~r~~~~g~~~~~~~~ 430 (518)
....+.+.....+.......+.+-. ..+-++.+.+|+ ++-|.+.|+....+.+
T Consensus 340 -----~~~~~~~~~~~~~~~l~~~~G~gng-svfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~ 413 (462)
T PRK15034 340 -----TGSGNFIAFYAVFMGLFLTAGLGSG-STFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAV 413 (462)
T ss_pred -----ccccHHHHHHHHHHHHHHHhcccch-HHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHc
Confidence 0011222222222222233333322 333455666664 1467889999999999
Q ss_pred HHHHHHHHhHHHHhccch--hhHHHHHHHHHHHHHHHHhcc
Q 035548 431 FTFVIAQAFLSMLCKMRW--GIFFFFTGWLLISLIFSATML 469 (518)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 469 (518)
|+++.|.++|...+..|. ..++.+.+..+++.++.+.+.
T Consensus 414 Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y 454 (462)
T PRK15034 414 GGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVY 454 (462)
T ss_pred ccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999988773 345555555566555555543
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-31 Score=264.58 Aligned_cols=396 Identities=12% Similarity=0.029 Sum_probs=256.4
Q ss_pred chHHHHHHHHHHHHhhhhhhcccccccccccchhHHHhhhhh-----hhhhhcccccccccCCChhHHHHHHHHHHHHHH
Q 035548 19 LTGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPL-----VYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAI 93 (518)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-----~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~ 93 (518)
..+.+|....++.++..+...|...++... +.+.++-... ..+++.....+.|++++..+.|++.+++.+++.
T Consensus 13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~ 90 (465)
T TIGR00894 13 FCSFRLFLSFLLHICNVIIIAQRICLSLTM--VAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQI 90 (465)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhhheEEE--EEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHH
Confidence 344556666666666666677776666443 3333311000 000011111234789999999999999999999
Q ss_pred HHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchhHHh
Q 035548 94 VACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLA--QNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNI 171 (518)
Q Consensus 94 i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~ 171 (518)
+++++.|+++||+|||+++..+.++++++.+++.++ .+++.+++.|+++|++.+...+....++.|++|+++|+++++
T Consensus 91 ~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 170 (465)
T TIGR00894 91 IIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLG 170 (465)
T ss_pred HHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHH
Confidence 999999999999999999999999999998887554 568889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhc-ccCChhhHHhcCChhHHHHHHHhhhCCccHH
Q 035548 172 CFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCI-IVETPASLIERGKQEQGLYTLRKIRGVKDVE 250 (518)
Q Consensus 172 ~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~a~~~~~~~~~~~~~~ 250 (518)
+...+..+|.++++++++.+.... .+||+.|++.++++++..+.+++ .+|+|+...+. ++++. +..+
T Consensus 171 ~~~~~~~~g~~i~~~l~~~l~~~~-~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~-~~i~--------- 238 (465)
T TIGR00894 171 MSTSGFQLGTFIFLPISGWLCESW-GGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCI-SKFEK-KYIN--------- 238 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-CCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCC-CHHHH-HHHH---------
Confidence 999999999999999977664321 38999999999988776655544 55666421100 00110 0000
Q ss_pred HHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHH-HcCCCChHHHHHHHHHHHHH
Q 035548 251 KEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQ-TMGYGSNASLLSAVISGTIN 329 (518)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~ 329 (518)
+..++.+.+.+.+.+++++++.+. ++...+..+......+.+..|.|.+++ .+|++..+.++...+..++.
T Consensus 239 ----~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~ 310 (465)
T TIGR00894 239 ----SSLQGQKGSTRQSLPIKAIPKSLP----VWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFA 310 (465)
T ss_pred ----hhcccccCCCCCCCCHHHHhcCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHH
Confidence 000000001111223444443332 333333334444455667778888875 46999999999999999999
Q ss_pred HHHhhhhhhhhhccCChHHHH---HhHHHHHHHH---HHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhcccccc
Q 035548 330 VASTLVAIVLVDKAGRKILLV---QAAIQMIICQ---CAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPI 403 (518)
Q Consensus 330 ~~~~~~~g~l~d~~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (518)
+++.++.|+++||+++|+... .......++. ....+... . ........+....+...+.+.. .+.
T Consensus 311 ~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~l~~~~~~~~-~~~ 381 (465)
T TIGR00894 311 WLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALP-Y-------LSAAFYLTIIILTLANAVSSGP-LAG 381 (465)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-H-------cCCchHHHHHHHHHHHHHhhhh-hhh
Confidence 999999999999875432110 0011111111 11111110 0 0112222222233322222222 223
Q ss_pred ceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhcc
Q 035548 404 CWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKM 446 (518)
Q Consensus 404 ~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 446 (518)
.+....|..|. .+|.+.|+.+..+.++++++|.+.|.+.+..
T Consensus 382 ~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~ 423 (465)
T TIGR00894 382 VLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQD 423 (465)
T ss_pred hhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCC
Confidence 33444566665 7899999999999999999999999988754
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-32 Score=265.61 Aligned_cols=357 Identities=14% Similarity=-0.006 Sum_probs=257.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHh-----hccHHHHHHHHHHhhhhhhcc
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCL-----AQNLGMLIAGRLSLGIGVGFG 149 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~ 149 (518)
+.+..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++.+. .++++.+++.|+++|++.+..
T Consensus 48 ~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 127 (417)
T PRK10489 48 TGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLG 127 (417)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Confidence 668899999999999999999999999999999999999988888777665442 568899999999999999988
Q ss_pred cchhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccCChhhHHh
Q 035548 150 NQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIE 229 (518)
Q Consensus 150 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~ 229 (518)
.+...+++.|++|+++|+++.++......+|..+|+.+++.+... .+|++.|++.++..++..+..+.+|++++..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 203 (417)
T PRK10489 128 VTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAA--GGVAWNYGLAAAGTFITLLPLLRLPALPPPP-- 203 (417)
T ss_pred HHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhCCCCCCCC--
Confidence 899999999999999999999999999999999999998766532 4799999888887777666667777654310
Q ss_pred cCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHH
Q 035548 230 RGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQ 309 (518)
Q Consensus 230 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (518)
.+.++ ..++ .+..++..++++..+...+..+ ... .......+.|.+.+
T Consensus 204 -~~~~~----------------~~~~----------~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~p~~~~ 251 (417)
T PRK10489 204 -QPREH----------------PLRS----------LLAGFRFLLASPVVGGIALLGG---LLT--MASAVRVLYPALAD 251 (417)
T ss_pred -ccccc----------------chHH----------HHHHHHHHHcChHHHHHHHHHH---HHH--HHHhHHHhhHHHHH
Confidence 00000 0000 0011222333222222222111 111 12344556777777
Q ss_pred H-cCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHH
Q 035548 310 T-MGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVIL 388 (518)
Q Consensus 310 ~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (518)
+ .|.+....++......++.+++.++.+++.||.++++.+..+..+..++.+++.. ..+.+.....
T Consensus 252 ~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~-------------~~~~~~~~~~ 318 (417)
T PRK10489 252 EVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGL-------------MPMWILAVLC 318 (417)
T ss_pred hccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHc-------------cchHHHHHHH
Confidence 6 7999999999999999999999999999999977777777666665555544432 1222223333
Q ss_pred HHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchh-hHHHHHHHHHHHHHHHHh
Q 035548 389 VCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWG-IFFFFTGWLLISLIFSAT 467 (518)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 467 (518)
.++++.+.+. ..+...+++.|..|++.||+++|+.+....++..+++.+.|.+.+..+.. .+...+++.++.+++...
T Consensus 319 ~~~~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 397 (417)
T PRK10489 319 LALFGYLSAI-SSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLL 397 (417)
T ss_pred HHHHHHHHHH-HHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 3333333222 22344567789999999999999999999999999999999999988854 555566666666666777
Q ss_pred cccCCCCCCHHHHH
Q 035548 468 MLPETKGIPIDEMV 481 (518)
Q Consensus 468 ~~~~~~~~~~~~~~ 481 (518)
..++.|+++++|++
T Consensus 398 ~~~~~~~~~~~~~~ 411 (417)
T PRK10489 398 VLGELRRFRQTPPE 411 (417)
T ss_pred hccccccccccccc
Confidence 77877777666555
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-30 Score=258.98 Aligned_cols=380 Identities=13% Similarity=0.092 Sum_probs=261.4
Q ss_pred HHHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhcc
Q 035548 29 IAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGR 108 (518)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Gr 108 (518)
.++++.++..++...+++. +|.+.+++ |.+..+.+++.+.+.++..++.+++|+++||+||
T Consensus 14 ~~~~~~~~~~~~~~~~~~~--~p~~~~~~-----------------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~ 74 (471)
T PRK10504 14 IVAFGFFMQSLDTTIVNTA--LPSMAQSL-----------------GESPLHMHMVIVSYVLTVAVMLPASGWLADRVGV 74 (471)
T ss_pred HHHHHHHHHHHhHHHHHHH--HHHHHHHh-----------------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 3445556777777666543 47777666 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHH
Q 035548 109 KPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLIN 188 (518)
Q Consensus 109 r~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~ 188 (518)
|++++.+.++.+++.+++.++++++.++++|+++|++.+...+...+++.|++|+++|+++.++.....++|..++|.++
T Consensus 75 r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 154 (471)
T PRK10504 75 RNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALG 154 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhccccCCCcchHHHHhhhHHHHHHHHHhh-cccCChhhHHhcCChhHHHHHH------------HhhhCCccHHHHHHH
Q 035548 189 YGTSRIHPYGWRISLGGAAVPALFLLLGSC-IIVETPASLIERGKQEQGLYTL------------RKIRGVKDVEKEYAE 255 (518)
Q Consensus 189 ~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e~p~~~~~~~~~~~a~~~~------------~~~~~~~~~~~~~~~ 255 (518)
+.+.. ..+||+.|++.....++..+... ..|+.+. ++.+.+...... ...+...........
T Consensus 155 g~l~~--~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (471)
T PRK10504 155 GLLVE--YASWHWIFLINIPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAG 229 (471)
T ss_pred HHHHh--hccHHHHHHHHHHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHH
Confidence 76654 35899999988877666544443 3444321 111112111100 000000000000000
Q ss_pred -----------HHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHHH-cCCCChHHHHHHH
Q 035548 256 -----------ICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQT-MGYGSNASLLSAV 323 (518)
Q Consensus 256 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~ 323 (518)
...+++..+++..+. ++++++....... .. +...........+.|++++. .|.++.+.++...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~l~---~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~ 304 (471)
T PRK10504 230 LVAVGVVALLLYLLHARNNNRALFSL-KLFRTRTFSLGLA---GS-FAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMI 304 (471)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCccCH-HHhcccchHHHHH---HH-HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 000011111111112 2444443322222 22 22223345566678888874 7999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhcccccc
Q 035548 324 ISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPI 403 (518)
Q Consensus 324 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (518)
...++.+++.++.+++.||++||+.+..+..+..+...++.... .....+.......+.+.+.+.... .
T Consensus 305 ~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~~~~~~-~ 373 (471)
T PRK10504 305 PMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVA----------LLGWYYLLPFVLFLQGMVNSTRFS-S 373 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhcc----------ccccHHHHHHHHHHHHHHHHHHHH-H
Confidence 88898999999999999999999998888776666655544321 111222222222222233332222 3
Q ss_pred ceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccch
Q 035548 404 CWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRW 448 (518)
Q Consensus 404 ~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (518)
...+..+..|++.++.++++.++...++..+++.+.|.+.+..++
T Consensus 374 ~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 374 MNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345567888999999999999999999999999999999887654
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-30 Score=248.42 Aligned_cols=331 Identities=13% Similarity=0.094 Sum_probs=230.0
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHH---h-----hccHHHHHHHHHHhhhh
Q 035548 74 CKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNC---L-----AQNLGMLIAGRLSLGIG 145 (518)
Q Consensus 74 ~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~---~-----~~~~~~l~~~r~l~G~~ 145 (518)
+|+|..++|++.+++.+++.++++++|+++||+||||++..+.++..++.+... + .++++.+++.|+++|++
T Consensus 46 lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 125 (392)
T PRK12382 46 LGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFG 125 (392)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHH
Confidence 389999999999999999999999999999999999999999888777654332 1 35789999999999999
Q ss_pred hhcccchhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccCChh
Q 035548 146 VGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPA 225 (518)
Q Consensus 146 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~ 225 (518)
.+...+...+++.|++|+++|++++++.+.+..+|..++|++++.+.. ..|||+.+.+..+..++........||.++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (392)
T PRK12382 126 ESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHS--HFGFAALALTTMVLPLLAWAFNGTVRKVPA 203 (392)
T ss_pred HHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHh--ccChHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 999999999999999999999999999999999999999999766543 358998877665544433332222333221
Q ss_pred hHHhcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHH
Q 035548 226 SLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAP 305 (518)
Q Consensus 226 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (518)
. + + ++.+.++..+...... . ...+. .........+.+
T Consensus 204 ~---~----~------------------------------~~~~~~~~~~~~~~~~-~-~~~l~----~~~~~~~~~~~~ 240 (392)
T PRK12382 204 H---A----G------------------------------ERPSLWSVVGLIWKPG-L-GLALQ----GVGFAVIGTFVS 240 (392)
T ss_pred C---c----c------------------------------cCchHHHHHHHHHHhH-H-HHHHH----HHHHhHHHHHHH
Confidence 0 0 0 0000111111111111 1 11111 112334455666
Q ss_pred HHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHH
Q 035548 306 VLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVV 385 (518)
Q Consensus 306 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (518)
.++++.+++. .+......+++.++++++.+++.||+++|+.+..+..+..++.+++... .+.+..
T Consensus 241 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~ 305 (392)
T PRK12382 241 LYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA-------------PTAWVA 305 (392)
T ss_pred HHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc-------------ccHHHH
Confidence 6777766653 4556666778888999999999999999998887777666665544331 122333
Q ss_pred HHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHHHHHH
Q 035548 386 VILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLISLIFS 465 (518)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (518)
+....+.+.+.+.. .+.......|.+|++.|+++.|+.+....++..++|.+.|.+.+..++...+.+.+.+.+...+.
T Consensus 306 ~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 384 (392)
T PRK12382 306 LAGAALTGAGCSLI-FPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIV 384 (392)
T ss_pred HHHHHHHHHHHHhH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 33333444333322 23344556788999999999999999999999999999999999888665554444444443333
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-31 Score=257.32 Aligned_cols=372 Identities=13% Similarity=0.062 Sum_probs=239.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhh----ccHHHHHHHHHHhhhhhhccc
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLA----QNLGMLIAGRLSLGIGVGFGN 150 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~----~~~~~l~~~r~l~G~~~g~~~ 150 (518)
|+++++.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.+++++. ++++.+.+.|++.|++.+...
T Consensus 57 g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~ 136 (438)
T TIGR00712 57 GFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGW 136 (438)
T ss_pred CCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcch
Confidence 8899999999999999999999999999999999999999999999998887764 467788899999999999999
Q ss_pred chhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHH-HHHhhcccCChhhHHh
Q 035548 151 QAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFL-LLGSCIIVETPASLIE 229 (518)
Q Consensus 151 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~ 229 (518)
+.....+.|++|+++|++++++.+.+..+|..+++.+...... ...+||..|++.++++++. ++..++++|+|+....
T Consensus 137 ~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~-~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~ 215 (438)
T TIGR00712 137 PPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMA-WFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGL 215 (438)
T ss_pred HHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCC
Confidence 9999999999999999999999999999999998877543322 1248999999988887774 4455667777653210
Q ss_pred cCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccc-hhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHH
Q 035548 230 RGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHP-YRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLF 308 (518)
Q Consensus 230 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (518)
+. .++ . ++ +...+.. ++.+.+.+.+.. .+..++++..+. .... ........+....|.|.++
T Consensus 216 ~~-~~~-~---~~-~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~p~~l 278 (438)
T TIGR00712 216 PP-IEE-Y---RN-DYPDDYN-------EKAEQELTAKEIFMQYVLPNKLLWY---IAIA-NVFVYLLRYGVLDWSPTYL 278 (438)
T ss_pred CC-chh-c---cc-ccccccc-------cccccccchHHHHHHHHccCchHHH---HHHH-HHHHHHHHHHHHHhHHHHH
Confidence 00 000 0 00 0000000 000000000001 112233332222 2222 2222233445667888888
Q ss_pred HH-cCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHH
Q 035548 309 QT-MGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVI 387 (518)
Q Consensus 309 ~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (518)
++ .|+++.++++...+..+.++++.++.+++.||+++++....+................ . +..+.+....
T Consensus 279 ~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~ 350 (438)
T TIGR00712 279 KEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWM-N-------PAGNPLVDMI 350 (438)
T ss_pred HHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHh-c-------CCCchHHHHH
Confidence 75 5999999999999999999999999999999996443222222222111111111100 0 1112222222
Q ss_pred HHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHH-HHHHHHhHHHHhccchhh-HHHHHHHHHHHHHHH
Q 035548 388 LVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFT-FVIAQAFLSMLCKMRWGI-FFFFTGWLLISLIFS 465 (518)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 465 (518)
.....+.+. .+..........|.+|++.|+++.|+.+..+++++ .++|.+.|.+.|..++.. +.+..++.+++.+..
T Consensus 351 ~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 429 (438)
T TIGR00712 351 CMIVIGFLI-YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL 429 (438)
T ss_pred HHHHHHHHH-ccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 222222111 11111112346799999999999999999888875 689999999999888554 344455555555555
Q ss_pred HhcccCCC
Q 035548 466 ATMLPETK 473 (518)
Q Consensus 466 ~~~~~~~~ 473 (518)
....+|.|
T Consensus 430 ~~~~~~~~ 437 (438)
T TIGR00712 430 IVVMIGEK 437 (438)
T ss_pred HHHHhhcc
Confidence 55555543
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-29 Score=245.17 Aligned_cols=354 Identities=14% Similarity=0.109 Sum_probs=246.7
Q ss_pred HHHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhcc
Q 035548 29 IAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGR 108 (518)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Gr 108 (518)
...++.++.+.+.+..++.. |.+.+++ |.|..+.|++.+.+.++..+++++.|+++||+||
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l--p~~~~~~-----------------~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~ 70 (381)
T PRK03633 10 LLLCGLLLLTLAIAVLNTLV--PLWLAQE-----------------HLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGF 70 (381)
T ss_pred HHHHHHHHHHHhhhhHHHHH--HHHHHHc-----------------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33455567777777776554 6777666 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHH
Q 035548 109 KPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLIN 188 (518)
Q Consensus 109 r~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~ 188 (518)
|+++..+.++.+++.+++++++|++.++++|+++|++.+...+...+.+.+..++++|+++++++..+.++|..+|+.++
T Consensus 71 k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 150 (381)
T PRK03633 71 NRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLV 150 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888888888999999999999999999999999999997
Q ss_pred hhccccCCCcchHHHHhhhHHHHHHH-HHhhcccCChhhHHhcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccc
Q 035548 189 YGTSRIHPYGWRISLGGAAVPALFLL-LGSCIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIK 267 (518)
Q Consensus 189 ~~~~~~~~~~wr~~f~~~~~~~~~~~-~~~~~~~e~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (518)
+.+... ..|+..+ ..+......+ +.....+++++ + +++.
T Consensus 151 ~~l~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------~-------------------------------~~~~ 190 (381)
T PRK03633 151 SKVSTE--LMSVLPW-VTGLVLAAILPLLFTRILNQQA------E-------------------------------NHDS 190 (381)
T ss_pred hccccc--ccchHHH-HHHHHHHHHHHHHHhcccCCCC------C-------------------------------CCCC
Confidence 765432 1222222 2222221111 11112222110 0 0001
Q ss_pred cchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChH
Q 035548 268 HPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKI 347 (518)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~ 347 (518)
.+..+.++++..+......+. ....+.....+.|.++++.|.+..+.+.......++.+++++..+++.||+++|+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~ 266 (381)
T PRK03633 191 TSIWPMLKLRQARLGVNGCII----SGIVLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLL 266 (381)
T ss_pred CCHHHHHHhcchHHHHHHHHH----HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHH
Confidence 122333333332221111111 1112334455678888888999888899889999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHH
Q 035548 348 LLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVST 427 (518)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 427 (518)
.+..+.....++.+.+.. ... ......+.+.+. ....|.......|..|++.++...+..+..
T Consensus 267 ~l~~~~~~~~~~~~~~~~-------------~~~---~~~~~~l~g~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (381)
T PRK03633 267 VLRVQVFVVILGSIAMLS-------------QAA---MAPALFILGAAG-FTLYPVAMAWACEKVEHHELVAMNQALLLS 329 (381)
T ss_pred HHHHHHHHHHHHHHHHhh-------------hHH---HHHHHHHHHHHH-HhHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 887776666655443321 011 111112222221 123355556677888888878888888888
Q ss_pred HHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHHH
Q 035548 428 NMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLISL 462 (518)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (518)
.++|..++|.+.|.+.|+.++...+...+.+.+..
T Consensus 330 ~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~ 364 (381)
T PRK03633 330 YTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIY 364 (381)
T ss_pred HHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 89999999999999999888654444443333333
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=250.04 Aligned_cols=371 Identities=17% Similarity=0.202 Sum_probs=249.5
Q ss_pred hHHHHHHHHHHHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHHHHHHHHHhh
Q 035548 20 TGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLA 99 (518)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~ 99 (518)
.+..+..+.+.++.+.++..|...+..+. +...+. ||++++..|++.+.+.+.+.+++|++
T Consensus 28 ~~~~~~~l~il~~vnlmny~Dr~~iagv~--~~v~~~-----------------fni~~s~~Gll~~vf~v~~~i~sPl~ 88 (493)
T KOG1330|consen 28 MKSPTLTLVILCLVNLMNYADRYTIAGVL--KEVQTY-----------------FNISDSELGLLQTVFIVVFMIASPLF 88 (493)
T ss_pred cccchHHHHHHHHHHHHHHhhhhhhhhhh--HHHHHh-----------------cCCCchhccchhHHHHHHHHHHHHHH
Confidence 34556677777788888888987776543 444444 49999999999999999999999999
Q ss_pred HHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchhHHhHHHHHHHH
Q 035548 100 SIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITV 179 (518)
Q Consensus 100 G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 179 (518)
|+++|||+||+++.+|..+|.++.++++++..||+++++|.+.|+|.+...|.++++++|.+|..+|++++++++.+.++
T Consensus 89 gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipv 168 (493)
T KOG1330|consen 89 GYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPV 168 (493)
T ss_pred HHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccCChhhHHhcCChhHHHHHHHhhhCCccHHHHHHHHHHH
Q 035548 180 GILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRA 259 (518)
Q Consensus 180 G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 259 (518)
|..+|.+.+....... ..|||.|++.++++++..++.+++.++|+. +..++.. ..
T Consensus 169 GsglG~vvgs~va~~~-~~Wr~af~~~avl~vi~~~L~~~f~~eP~r----ga~~~~~--------------------~~ 223 (493)
T KOG1330|consen 169 GSGLGYVVGSVVASLT-FWWRWAFRGSAVLGVIVGLLVFLFVREPER----GARDEVD--------------------GE 223 (493)
T ss_pred ccceeEEeeeeeccCc-cceEEEEEeehHHHHHHHHHHHhhccCccc----ccccccc--------------------cC
Confidence 9999999877666554 349999999999999976666554444421 1111100 00
Q ss_pred HHhhcccccchhhhc---ccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHH----HHcCCCChHHHHHHHHHHHHHHHH
Q 035548 260 TEISNLIKHPYRSLM---KKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLF----QTMGYGSNASLLSAVISGTINVAS 332 (518)
Q Consensus 260 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~ 332 (518)
.+..+.....++++. +.+......+......+ ..+.+.+|.|.+. +-.|++.++..++..+...++.+|
T Consensus 224 ~~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~f----v~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lG 299 (493)
T KOG1330|consen 224 NKMVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQF----VIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLG 299 (493)
T ss_pred CcCCCCccchHHHHHHHHccCceeeehHHHHHHHH----hccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhh
Confidence 000011112223322 21111111222222222 2233444544443 334778888888889999999999
Q ss_pred hhhhhhhhhccCCh----HHHHHhHHHHHHHH---HHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccce
Q 035548 333 TLVAIVLVDKAGRK----ILLVQAAIQMIICQ---CAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICW 405 (518)
Q Consensus 333 ~~~~g~l~d~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (518)
.+++|.++||+.|+ ......-+..+.+. +.+.+..... .....+..++.+.+........+.+. .
T Consensus 300 vl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~-------~~~s~~~~~il~~~g~~~~~~~~a~n-~ 371 (493)
T KOG1330|consen 300 VLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAF-------TSSSMIFGLILFLVGETISWFNWATN-N 371 (493)
T ss_pred heehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhh-------hhHHHHHHHHHHHHHHHHHhcccccc-c
Confidence 99999999994321 11222212111111 1111111100 12222222333322222233333333 3
Q ss_pred eeecccCChhhhhhHHHHHHHHHHHHH-HHHHHHhHHHHhcc
Q 035548 406 LISSEIYPLETRNAGYFFAVSTNMVFT-FVIAQAFLSMLCKM 446 (518)
Q Consensus 406 ~~~~~~~p~~~r~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~ 446 (518)
-+..|+.|++.|.+++++...+..+.+ +-+|++.|.+.|+.
T Consensus 372 ~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l 413 (493)
T KOG1330|consen 372 PIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKL 413 (493)
T ss_pred ceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHh
Confidence 456899999999999999888776554 44555999988875
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-30 Score=259.09 Aligned_cols=384 Identities=16% Similarity=0.116 Sum_probs=268.8
Q ss_pred HHHHHHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhhh
Q 035548 26 CSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRK 105 (518)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr 105 (518)
....++++.++..+|..+.++. +|.+.+++ |.+..+.+++.+.+.++..++.++.|+++||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~-----------------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr 63 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVNVA--IPTIAGDL-----------------GSSLSQVQWVITSYMLANAISIPLTGWLAKR 63 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHhc-----------------CCChhhhhHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3455666778888888877644 36777666 8899999999999999999999999999999
Q ss_pred hccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHH
Q 035548 106 FGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAAN 185 (518)
Q Consensus 106 ~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~ 185 (518)
+|||++++.+.++..++.+++++++|++.++++|+++|++.+...+...+++.|++|+++|+++.+++..+..+|..++|
T Consensus 64 ~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~ 143 (485)
T TIGR00711 64 FGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGP 143 (485)
T ss_pred hCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccCCCcchHHHHhhhHHHHHHHHH-hhcccCChhhHHhcCChhHHHH------------HHHhhhCCcc-HHH
Q 035548 186 LINYGTSRIHPYGWRISLGGAAVPALFLLLG-SCIIVETPASLIERGKQEQGLY------------TLRKIRGVKD-VEK 251 (518)
Q Consensus 186 ~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~a~~------------~~~~~~~~~~-~~~ 251 (518)
.+++.+.. ..+||+.|++.++++++..+. .+++||+++. ++++.+.... ...+....+. .+.
T Consensus 144 ~~~~~l~~--~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 219 (485)
T TIGR00711 144 TLGGWIIE--NYHWRWIFLINVPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSN 219 (485)
T ss_pred ccHhHhcc--CcCceehhhhhhHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCch
Confidence 99776643 468999999988877765444 3445654331 1111111100 0000000000 000
Q ss_pred HHHHH----------HHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHHH-cCCCChHHHH
Q 035548 252 EYAEI----------CRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQT-MGYGSNASLL 320 (518)
Q Consensus 252 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~ 320 (518)
+.... ....+..++++....+.++++......+.. +. ....+.....+.|.++++ .|+++.++++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~p~~~~~~~g~s~~~~g~ 295 (485)
T TIGR00711 220 EILILSITGLVAIIAFVVWELTDDNPLVDLRLFKYRNFTIGCVYM---SL-LGLGLYGSFYLLPLYLQQVLGYTALQAGL 295 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCCChHHHHHHH---HH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 00000 000011111111112344444333222222 22 222334555677877765 6999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccc
Q 035548 321 SAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSW 400 (518)
Q Consensus 321 ~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (518)
......++.+++.++.+++.||++||+.+..+..+..++...+..... +..+.+.......+.+.+.+...
T Consensus 296 ~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~g~g~~~~~ 366 (485)
T TIGR00711 296 HILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFT---------PDTPFLAIALPQFIRGFGMGCFF 366 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCC---------CCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988777766666655542110 12223333333444444444333
Q ss_pred cccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhcc
Q 035548 401 GPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKM 446 (518)
Q Consensus 401 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 446 (518)
.+.. ....+..|++.++++.|+.+....+|+.+++.+.+.+.++.
T Consensus 367 ~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~~ 411 (485)
T TIGR00711 367 MPLT-TIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTNR 411 (485)
T ss_pred HHHH-HHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 34567789999999999999999999999999999988754
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-30 Score=249.79 Aligned_cols=322 Identities=13% Similarity=0.115 Sum_probs=232.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhh
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVP 154 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (518)
|.++.+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.+++.++++++.+++.|++.|++.+...+...
T Consensus 36 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 115 (385)
T TIGR00710 36 STPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQ 115 (385)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHH-hhcccCChhhHHhcCCh
Q 035548 155 LFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLG-SCIIVETPASLIERGKQ 233 (518)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~ 233 (518)
+++.|++|+++|+++.++.+....+|..+++.+++.+.. ..+||+.|++.++..++..+. .++.||+++.. .+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~- 189 (385)
T TIGR00710 116 ALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILV--WLSWHAIFAFLSLAGILLSALIFFILPETLPYE---AR- 189 (385)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc---cc-
Confidence 999999999999999999999999999999999776543 358999999888877665444 34456654210 00
Q ss_pred hHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHH-HcC
Q 035548 234 EQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQ-TMG 312 (518)
Q Consensus 234 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g 312 (518)
++ .++ ....+++.++++..+....... + ..........+.|.+++ +.|
T Consensus 190 ~~-------------~~~--------------~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~g 238 (385)
T TIGR00710 190 IQ-------------IST--------------YFETFLLLLKSKMFWGYALIYG---A-SFGGFFAFFSGAPFVYIDIMG 238 (385)
T ss_pred CC-------------HHH--------------HHHHHHHHHcCchhHHHHHHHH---H-HHHHHHHHHHcChHHHHHHcC
Confidence 00 000 0011223333333222222211 1 12223445556666664 679
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhH-HHHHHHHH
Q 035548 313 YGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAK-VVVILVCV 391 (518)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 391 (518)
+++.+.+.......++.+++.++.+++.||+++|+.+..+.....++.+++..... .....+ ..+....+
T Consensus 239 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 309 (385)
T TIGR00710 239 VSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAI---------LGLGSWAMIIGPMMF 309 (385)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH---------hccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999888776666666555543221 111122 22222333
Q ss_pred HHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHh
Q 035548 392 FVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLC 444 (518)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 444 (518)
.+.+.+.. .+.......|..| +.++++.++.+.....++.+.+.+.+...+
T Consensus 310 ~g~~~~~~-~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~ 360 (385)
T TIGR00710 310 VGIGNSMI-SSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIHG 360 (385)
T ss_pred HHHHHHHH-HHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33333322 2344455667776 567999999999988877777777774433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-30 Score=251.01 Aligned_cols=328 Identities=14% Similarity=0.032 Sum_probs=241.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhc-----cHHHHHHHHHHhhhhhhcc
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQ-----NLGMLIAGRLSLGIGVGFG 149 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~-----~~~~l~~~r~l~G~~~g~~ 149 (518)
+.+..+.+++.+++.++..++++++|+++||+|||+++..+.++..++.++..+.+ +++.+++.|+++|++.+..
T Consensus 30 ~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 109 (365)
T TIGR00900 30 TGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFF 109 (365)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999999999999999999999999999999999988888877 9999999999999999999
Q ss_pred cchhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcc--cCChhhH
Q 035548 150 NQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCII--VETPASL 227 (518)
Q Consensus 150 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~--~e~p~~~ 227 (518)
.+...+++.|++|+++|++++++.+.+..+|.+++|.+++.+... .+||+.|++.++..++..+..+.+ ||+++.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 186 (365)
T TIGR00900 110 TPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYAT--LGIKWAIWVDAVGFAISALLIVSVRIPELAAS- 186 (365)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHhcccccCCCc-
Confidence 999999999999999999999999999999999999998776533 589999988877766654444433 222210
Q ss_pred HhcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHH
Q 035548 228 IERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVL 307 (518)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (518)
++.+. .++..+ +....++..++++..+....... ............+.|.+
T Consensus 187 ---~~~~~-------------~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 237 (365)
T TIGR00900 187 ---EIQAL-------------SNAVLR----------DTREGIKFVLKNPLLRTLLLLAL---LFNLVFAPAIVALFPYV 237 (365)
T ss_pred ---ccccc-------------chhHHH----------HHHhHHHHHHcCcHHHHHHHHHH---HHHHHHHHHHHHHhHHH
Confidence 00000 000000 00112333444333332222222 22212122233667777
Q ss_pred HHH-cCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHH
Q 035548 308 FQT-MGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVV 386 (518)
Q Consensus 308 ~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (518)
.++ +|.+..+.+.......++.+++.++.+++.||.+||+.+..+....+++...+... ++ +.+...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~-~~~~~~ 305 (365)
T TIGR00900 238 QSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT-----------PP-NFPLFL 305 (365)
T ss_pred HHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh-----------ch-hHHHHH
Confidence 765 79999999999999999999999999999999999998887766555555544432 11 233333
Q ss_pred HHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccc
Q 035548 387 ILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMR 447 (518)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (518)
...++.+.+.+. ..+....+..|..|++.|+++.|+.+....++..+++.+.|.+.|..|
T Consensus 306 ~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 306 VLWFAIGVGYGP-INVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344444444333 234556778899999999999999999999999999999999988653
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-30 Score=251.38 Aligned_cols=340 Identities=21% Similarity=0.253 Sum_probs=234.4
Q ss_pred CChhHHHHHHHH-----HHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHH--------HHHHHHHHh
Q 035548 76 YDNQYLQLFTSS-----LYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLG--------MLIAGRLSL 142 (518)
Q Consensus 76 ~s~~~~~~~~s~-----~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~--------~l~~~r~l~ 142 (518)
.++.+.+.+.+. .+++..+++++.|+++||+|||+++..+.++..++.++++++++++ .+++.|+++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~ 106 (394)
T TIGR00883 27 SGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQ 106 (394)
T ss_pred CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHH
Confidence 445555554443 3344457899999999999999999999999999999999999875 488899999
Q ss_pred hhhhhcccchhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccc------cCCCcchHHHHhhhHHHHHHHHH
Q 035548 143 GIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSR------IHPYGWRISLGGAAVPALFLLLG 216 (518)
Q Consensus 143 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~------~~~~~wr~~f~~~~~~~~~~~~~ 216 (518)
|++.+...+...+++.|++++++|++..++.+.+..+|.++++.++..... ...++||+.|++.+++.++....
T Consensus 107 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 186 (394)
T TIGR00883 107 GFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYL 186 (394)
T ss_pred HhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987654321 12468999999888777666665
Q ss_pred hhcccCChhhHHhcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhc
Q 035548 217 SCIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTG 296 (518)
Q Consensus 217 ~~~~~e~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (518)
....+|+|++..+++ ++++.+.+.++.++++. ++.+...... +.....
T Consensus 187 ~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~ 234 (394)
T TIGR00883 187 RRNLEETPVFEKAQE------------------------------KHKKKRGPIRETLTKHR-KPFLLGLGLV-IATTTT 234 (394)
T ss_pred HHhcCCChhHHHHHh------------------------------ccccccCCHHHHHHhch-HHHHHHHHHH-HHHHHH
Confidence 566677654211100 00111223344443322 1223322222 222333
Q ss_pred hhHHHHhHHHHH-HHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCC
Q 035548 297 INVVMFYAPVLF-QTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTN 375 (518)
Q Consensus 297 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (518)
......+.|.+. ++.|.+..+.+.......++.+++.++.+++.||++||+.+.....+..+..+.+.....
T Consensus 235 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~------- 307 (394)
T TIGR00883 235 FYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALL------- 307 (394)
T ss_pred HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh-------
Confidence 455666777777 567899899999999999999999999999999999999876554444333221111110
Q ss_pred CCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHH-HHHHHHHHHHHHHhHHHHhccc-hhhHHH
Q 035548 376 TMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAV-STNMVFTFVIAQAFLSMLCKMR-WGIFFF 453 (518)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 453 (518)
...+.+.......+.+.+.+.. .+....+..|.+|++.|+++.++.+ ....++..++|.+.|.+.+..+ +...++
T Consensus 308 --~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~ 384 (394)
T TIGR00883 308 --DSGSFTLFFFLVLGLALIGGMY-TGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGY 384 (394)
T ss_pred --cCCchHHHHHHHHHHHHHHHHH-hhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHH
Confidence 1122333333333333333333 2445677899999999999999854 4456788899999999999887 444444
Q ss_pred HHHH
Q 035548 454 FTGW 457 (518)
Q Consensus 454 ~~~~ 457 (518)
...+
T Consensus 385 ~~~~ 388 (394)
T TIGR00883 385 YLAA 388 (394)
T ss_pred HHHH
Confidence 4333
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.2e-30 Score=250.30 Aligned_cols=334 Identities=16% Similarity=0.087 Sum_probs=225.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhhhHHHh
Q 035548 80 YLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISE 159 (518)
Q Consensus 80 ~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~ 159 (518)
+.|++.+++.++..++++++|+++||+|||+++..+.++..++.+++.++++++.+++.|++.|++.+ ..+....++.+
T Consensus 55 ~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~ 133 (408)
T PRK09874 55 WSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIAT 133 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHH
Confidence 35899999999999999999999999999999999999999999999999999999999999999865 56778889999
Q ss_pred cCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHh-hcccCChhhHHhcCChhHHHH
Q 035548 160 IAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGS-CIIVETPASLIERGKQEQGLY 238 (518)
Q Consensus 160 ~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~a~~ 238 (518)
++|+++|+++.++...+..+|..++|.+++.+.. ..+||+.|++.++..++..+.. ++++|.++.. ++++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--- 204 (408)
T PRK09874 134 QVPRNKSGWALGTLSTGGVSGALLGPLAGGLLAD--SYGLRPVFFITASVLFLCFLVTLFCIRENFQPV----SKKE--- 204 (408)
T ss_pred hcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCHHHHHHHHHHHHHHHHHHHHHHhccCcccc----cchh---
Confidence 9999999999999999999999999999876543 3589999999888776654443 4455543110 0000
Q ss_pred HHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCCCh--
Q 035548 239 TLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQTMGYGSN-- 316 (518)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-- 316 (518)
.. +. + +..+.++++.. +...................+.+.+..+.+.+..
T Consensus 205 --------------~~---~~-------~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (408)
T PRK09874 205 --------------ML---HM-------R-EVVTSLKNPKL---VLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNI 256 (408)
T ss_pred --------------hh---HH-------H-HHHHhCcCCch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 00 00 0 00111222221 1111111111111223334445555554432222
Q ss_pred --HHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHH
Q 035548 317 --ASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVA 394 (518)
Q Consensus 317 --~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (518)
..+......+++.+++.+..+++.||++||+.+..+.....++.+.+... .+.+...+...+.+.
T Consensus 257 ~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~ 323 (408)
T PRK09874 257 AFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFV-------------QTPLQLGILRFLLGA 323 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh-------------ccHHHHHHHHHHHHh
Confidence 23455566678888889999999999999999887766655544433321 122333333333333
Q ss_pred hhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHH-HHHHHHHH
Q 035548 395 GFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFFTGW-LLISLIFS 465 (518)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 465 (518)
+.+. ..+.......+..|++.+++.+++.+....++..++|.+.|.+.+..++...+...++ .++..+..
T Consensus 324 ~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~ 394 (408)
T PRK09874 324 ADGA-LLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYS 394 (408)
T ss_pred hhHh-hHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Confidence 3332 2234445566778889999999999999999999999999999998886544444444 44433333
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-29 Score=245.76 Aligned_cols=345 Identities=12% Similarity=0.100 Sum_probs=228.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHH---h-hccHHHHHHHHHHhhhhhhccc
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNC---L-AQNLGMLIAGRLSLGIGVGFGN 150 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~---~-~~~~~~l~~~r~l~G~~~g~~~ 150 (518)
|++..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+++. + .++++.+++.|++.|++.+...
T Consensus 44 g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~ 123 (402)
T TIGR00897 44 GLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFA 123 (402)
T ss_pred CCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHH
Confidence 89999999999999999999999999999999999999999999998876553 3 3578889999999999998888
Q ss_pred chhhhHHHhcCCCCcchhHHhHHHHHHHHHH-HHHHHHHhhccccCCCcchHHHHhhhHHHHHHHH-HhhcccCChhhHH
Q 035548 151 QAVPLFISEIAPPKYRGGLNICFQLLITVGI-LAANLINYGTSRIHPYGWRISLGGAAVPALFLLL-GSCIIVETPASLI 228 (518)
Q Consensus 151 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~ 228 (518)
+...+++.+++|+++|++++++.+.+.++|. ++++.+++.+.. ..||+..++......++..+ ..++.++.++. .
T Consensus 124 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 200 (402)
T TIGR00897 124 YSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIP--AFGEMNTLWSALAFVLTGGVIALFSNKDIFTP-Q 200 (402)
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--ccchHHHHHHHHHHHHHHHHHHHhccCCCCCc-c
Confidence 8888899999999999999999999999997 578888655443 35766555544333333222 23333332210 0
Q ss_pred hcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHH
Q 035548 229 ERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLF 308 (518)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (518)
++++.+ + ..+ .+..++++++++.. +...... +...........+.|.+.
T Consensus 201 ~~~~~~-------------~----~~~----------~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~p~~~ 249 (402)
T TIGR00897 201 HMQTRE-------------K----FSE----------LGKAATILFTNPNV---LLGGMVR-IINTIGLFGFAVFLPMFV 249 (402)
T ss_pred cccCCc-------------c----hhh----------HHHHHHHHHcChhH---HHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 000000 0 000 00112234443332 2222222 222334456677889888
Q ss_pred HHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHH-HhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHH
Q 035548 309 QTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLV-QAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVI 387 (518)
Q Consensus 309 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (518)
++.|++..+.+.......++.+++.++.|+++||++||+... .+.+...++.+.+...... .....+....
T Consensus 250 ~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~--------~~~~~~~~~~ 321 (402)
T TIGR00897 250 AELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQH--------FGHSFAVALI 321 (402)
T ss_pred HHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHc--------cCCcHHHHHH
Confidence 889999999888888899999999999999999999888764 2222233322222221100 0112223333
Q ss_pred HHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchh-hHHHHHHHHHHHHHH
Q 035548 388 LVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWG-IFFFFTGWLLISLIF 464 (518)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 464 (518)
...+.+.+... ..+.. ....|..| +.|+++.|+.+....+++.++|.+.+.+.+..|+. .+++.+++.++..+.
T Consensus 322 ~~~~~G~~~~~-~~~~~-~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~ 396 (402)
T TIGR00897 322 IAIALGIFLAG-YVPLA-AVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFL 396 (402)
T ss_pred HHHHHHHHHHH-HHHHH-HHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence 33333333332 22332 33456655 57999999999999999999999999999998854 444444444444433
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-31 Score=259.01 Aligned_cols=369 Identities=13% Similarity=0.068 Sum_probs=244.3
Q ss_pred hhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHH
Q 035548 35 LMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQA 114 (518)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~ 114 (518)
+...++...++.. +|.+.+++ |++..+.+++.+++.++..+++++.|+++||+|||+++..
T Consensus 5 ~~~~~~~~~~~~~--~~~~~~~~-----------------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 65 (379)
T TIGR00881 5 AAYYLVRKNFALA--MPYLVEEI-----------------GLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPI 65 (379)
T ss_pred hHHHHhHHhhhhh--hHHHHHHh-----------------CCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHH
Confidence 4444555555433 35666666 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHH-HHhhccc
Q 035548 115 ASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANL-INYGTSR 193 (518)
Q Consensus 115 ~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~-i~~~~~~ 193 (518)
+.++.+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++. ++..+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~- 144 (379)
T TIGR00881 66 GLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIA- 144 (379)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHH-
Confidence 999999999999999999999999999999999999999999999999999999999999999999999994 544432
Q ss_pred cCCCcchHHHHhhhHHHHHH-HHHhhcccCChhhHHhcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhh
Q 035548 194 IHPYGWRISLGGAAVPALFL-LLGSCIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRS 272 (518)
Q Consensus 194 ~~~~~wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (518)
+..+||+.|++.+++.++. ++..++.+|+|+....+.+.++. . ++.+++ + ++..+..+..+...++
T Consensus 145 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~~~--~-~~~~~~~~~~~~~~~~ 211 (379)
T TIGR00881 145 -ELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMP--------N-EEPDGD--A-EKKEEELTKKQIFLQY 211 (379)
T ss_pred -hcCCchhHHHHHHHHHHHHHHHHheeeCCCccccccCccccCc--------c-cccccc--c-ccccccccchHHHHHH
Confidence 2358999999888776664 44455566665421110000000 0 000000 0 0000000001112223
Q ss_pred hcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHH-HcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHH
Q 035548 273 LMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQ-TMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQ 351 (518)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~ 351 (518)
.++++..+. ..+..+...........+.|.+++ ..|++..+.+.......++.+++.++.+++.||..+|+....
T Consensus 212 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~ 287 (379)
T TIGR00881 212 VLLNKVLWY----ISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPL 287 (379)
T ss_pred HHhcchHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHH
Confidence 333333222 222222222233455666777764 569999999999999999999999999999998643322222
Q ss_pred hHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHH
Q 035548 352 AAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVF 431 (518)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~ 431 (518)
...........+..... . +..............+. ...+..+....+..|..|++.|+++.|+.+....++
T Consensus 288 ~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 358 (379)
T TIGR00881 288 AVFFMALIIVSLLVYWL-N-------PAANPLMDLICLFALGF-LVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLG 358 (379)
T ss_pred HHHHHHHHHHHHHHHhc-C-------cchhHHHHHHHHHHHHH-HHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhh
Confidence 21111111111111100 0 11122222222222222 222222333456789999999999999999999999
Q ss_pred HHHHHHHhHHHHhccchh
Q 035548 432 TFVIAQAFLSMLCKMRWG 449 (518)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~ 449 (518)
..++|.+.|.+.|..++.
T Consensus 359 ~~~~~~~~g~l~~~~g~~ 376 (379)
T TIGR00881 359 GILAGLPLGYLADGFGWA 376 (379)
T ss_pred hhhhhhhHHHHHHhhccc
Confidence 999999999999987754
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-29 Score=246.78 Aligned_cols=371 Identities=11% Similarity=0.066 Sum_probs=248.5
Q ss_pred hHHHHHHHHHHHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHHHHHHHHHhh
Q 035548 20 TGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLA 99 (518)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~ 99 (518)
++..+..+....+..+..+++....+.. .|.+.++| |+++.+.|++.+.+.+++.+++++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~i~~~~-----------------~~s~~~~gl~~~~~~~g~~i~~~~~ 81 (438)
T PRK10133 21 SRSYIIPFALLCSLFFLWAVANNLNDIL--LPQFQQAF-----------------TLTNFQAGLIQSAFYFGYFIIPIPA 81 (438)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHh-----------------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555556667777777666544 36776666 8999999999999999999999999
Q ss_pred HHhhhhhccHHHHHHHHHHHHHHHHHH---HhhccHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchhHHhHHHHH
Q 035548 100 SIVCRKFGRKPTIQAASVFFLIGAILN---CLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLL 176 (518)
Q Consensus 100 G~l~dr~Grr~~l~~~~~l~~~~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 176 (518)
|+++||+|||+++..+..+++++.+++ .++++++.++++|+++|+|.|...+..+.++.|+.++++|.+.+++.+..
T Consensus 82 g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~ 161 (438)
T PRK10133 82 GILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTF 161 (438)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHH
Confidence 999999999999999999999999875 46899999999999999999999999999999987777777789999999
Q ss_pred HHHHHHHHHHHHhhccccC------------------C------CcchHHHHhhh-HHHHHHHHH-hhcccCChhhHHhc
Q 035548 177 ITVGILAANLINYGTSRIH------------------P------YGWRISLGGAA-VPALFLLLG-SCIIVETPASLIER 230 (518)
Q Consensus 177 ~~~G~~i~~~i~~~~~~~~------------------~------~~wr~~f~~~~-~~~~~~~~~-~~~~~e~p~~~~~~ 230 (518)
+.+|..+++.++..+.... . .+||++|+... +..++.++. ....||.+.. +
T Consensus 162 ~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~---~ 238 (438)
T PRK10133 162 NSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---N 238 (438)
T ss_pred HHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc---c
Confidence 9999999998865432100 0 25677775433 333332222 2234442210 0
Q ss_pred CChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHH-HH
Q 035548 231 GKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVL-FQ 309 (518)
Q Consensus 231 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 309 (518)
+.+ ++..+...+.+++++++..+...+..++.. ........|.+.+ .+
T Consensus 239 -~~~--------------------------~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~l~~ 287 (438)
T PRK10133 239 -HSD--------------------------AKQGSFSASLSRLARIRHWRWAVLAQFCYV----GAQTACWSYLIRYAVE 287 (438)
T ss_pred -ccc--------------------------ccccchhhhHHHHHhCchHHHHHHHHHHHH----HHHHHHHHHHHHHHhh
Confidence 000 000000112334444444333222222222 2223333455544 44
Q ss_pred -HcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHH
Q 035548 310 -TMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVIL 388 (518)
Q Consensus 310 -~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (518)
..|+++.+++.......++.++++++.+++.||+++|+.+..+..+..+.+++..+. + .. ..+..
T Consensus 288 ~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~-----------~-~~--~~~~~ 353 (438)
T PRK10133 288 EIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA-----------G-GH--VGLIA 353 (438)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc-----------C-Ch--HHHHH
Confidence 469999999999999999999999999999999999999887766655444433221 1 11 22333
Q ss_pred HHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccc-hhhHHHHHHHHHH
Q 035548 389 VCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMR-WGIFFFFTGWLLI 460 (518)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 460 (518)
+.+.+.+.+..+ |..++...+..|++ .+++.++.. ....++.++|.+.|.+.|..+ ....++....+.+
T Consensus 354 ~~l~glg~~~i~-P~~~s~a~~~~~~~-~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~ 423 (438)
T PRK10133 354 LTLCSAFMSIQY-PTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFA 423 (438)
T ss_pred HHHHHHHHHHHH-HHHHHHHHcccchh-hccchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 344444444433 55566677877764 477777775 455788999999999999876 3333333333333
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.4e-30 Score=248.93 Aligned_cols=360 Identities=14% Similarity=0.184 Sum_probs=261.2
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhc--cHHHHHHHHHHhhhhhhc
Q 035548 71 DNYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQ--NLGMLIAGRLSLGIGVGF 148 (518)
Q Consensus 71 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~ 148 (518)
+.++++|+.+.+++.++++.|+.+++++.|+++||+|.|+++..+.++.++++++..++. +++.+++.|++||++.|.
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 567899999999999999999999999999999999999999999999999999998874 556789999999999999
Q ss_pred ccchhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhc-ccCChhhH
Q 035548 149 GNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCI-IVETPASL 227 (518)
Q Consensus 149 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~p~~~ 227 (518)
.+|+...+.+.|.|++||++..++...+..+|.+++.++++.+... ..||+.+|++.++.+++..+++++ ..|+|..-
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s-~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h 223 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES-SLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKH 223 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc-CCCCchHHHHHHHHHHHHHHHHHHHhcCCcccC
Confidence 9999999999999999999999999999999999999998887765 369999999999999997666654 56667421
Q ss_pred HhcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhh---cccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhH
Q 035548 228 IERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEIS---NLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYA 304 (518)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (518)
..-.++|.+..++...++ ++.+.+++++++.+. ++...+..+....++..+..|.
T Consensus 224 ------------------~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~----vwai~~~~f~~~~~~~~l~~y~ 281 (466)
T KOG2532|consen 224 ------------------PNISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPP----VWAIWISAFGGNWGFYLLLTYL 281 (466)
T ss_pred ------------------CCCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHH----HHHHHHHHHHHHHHHHHHHHHh
Confidence 011112222222221111 113668888886654 4445555555566778889999
Q ss_pred HHHHHH-cCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCCh--------H-HHHHhHHHHHHHHHHHHHHHHHhcccC
Q 035548 305 PVLFQT-MGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRK--------I-LLVQAAIQMIICQCAIGVILKMFLLTT 374 (518)
Q Consensus 305 ~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (518)
|.|+++ +|++..+.|++.++..+...+..+++|.++||+.+| | .-.++..+.+++++.+++.
T Consensus 282 PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~-------- 353 (466)
T KOG2532|consen 282 PTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFT-------- 353 (466)
T ss_pred hHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeec--------
Confidence 999965 599999999999999999999999999999998652 2 2223334444444444332
Q ss_pred CCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhcc---chh-h
Q 035548 375 NTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKM---RWG-I 450 (518)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~ 450 (518)
+..+.+..+.++.+.....+.... -.+.-..+..| +..+..+|+.+....+.++++|.+.+.+.... .|. .
T Consensus 354 ---~~~~~~~a~~~l~~~~~~~g~~~~-Gf~~~~~~~ap-q~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~V 428 (466)
T KOG2532|consen 354 ---SDEHRLLAVILLTIAIGLSGFNIS-GFYKNHQDIAP-QHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIV 428 (466)
T ss_pred ---CCCcchHHHHHHHHHHHHcccchh-hhHhhhhhccc-hHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHH
Confidence 222333333333333222222221 11222233344 45599999999999999999999999998421 344 4
Q ss_pred HHHHHHHHHHHHHHHH
Q 035548 451 FFFFTGWLLISLIFSA 466 (518)
Q Consensus 451 ~~~~~~~~~~~~~~~~ 466 (518)
|++.+++.++..++..
T Consensus 429 F~i~a~i~~~~~i~f~ 444 (466)
T KOG2532|consen 429 FLIAAGILIVGNIIFL 444 (466)
T ss_pred HHHHHHHHHHhchhee
Confidence 4444444444443333
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=230.45 Aligned_cols=349 Identities=15% Similarity=0.134 Sum_probs=259.4
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHhhhhhh
Q 035548 71 DNYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQN---LGMLIAGRLSLGIGVG 147 (518)
Q Consensus 71 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~---~~~l~~~r~l~G~~~g 147 (518)
++++|+|+.|.+++.++..+...+..++.|.+.||+|.|++..++.++..+.++..+++.+ ++++++.+.+.|++.+
T Consensus 41 ~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~Ga 120 (417)
T COG2223 41 KSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGA 120 (417)
T ss_pred ccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccc
Confidence 3455999999999999999999999999999999999999999999999999999999854 4599999999999655
Q ss_pred cccchhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCc---chHHHHhhhHHHHHHHH-HhhcccCC
Q 035548 148 FGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYG---WRISLGGAAVPALFLLL-GSCIIVET 223 (518)
Q Consensus 148 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~---wr~~f~~~~~~~~~~~~-~~~~~~e~ 223 (518)
.+.....++++|+||+++|.++|+.. ..++|..+..+++..+... .+ ||....+..+..++..+ .++...+.
T Consensus 121 -sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~--~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~ 196 (417)
T COG2223 121 -SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVA--FGFLAWRNVAGIYVVALAIAAVLAWLGMNDV 196 (417)
T ss_pred -eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 88899999999999999999999999 8888888777776555433 35 99998888887777444 44455555
Q ss_pred hhhHHhcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccc-cchhhhcccCChhHHHHHHHHHHHHHhhchhHHHH
Q 035548 224 PASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIK-HPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMF 302 (518)
Q Consensus 224 p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (518)
|..... .++.. ..++..++++..|.+ .+..+..+.++..+..
T Consensus 197 p~~r~~---------------------------------~~~~~~~~~~~v~~~~~~W~l----sllY~~tFG~Fvgfs~ 239 (417)
T COG2223 197 PEHRAS---------------------------------VKPQLPAQLKAVFSNKDTWLL----SLLYFATFGGFVGFSA 239 (417)
T ss_pred hhhhcc---------------------------------ccccchhHHHHHhcCcchHHH----HHHHHHHHHHHHHHHH
Confidence 521000 00001 223334444443333 3333334456677888
Q ss_pred hHHHHHH-HcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCch
Q 035548 303 YAPVLFQ-TMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVP 381 (518)
Q Consensus 303 ~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (518)
+.|.+++ ++|.++.+++.......+.+.+.++++|+++||+|.+|.+...+..++++..++....... ....+
T Consensus 240 ~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~------~~~~~ 313 (417)
T COG2223 240 YLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGF------GHGGS 313 (417)
T ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHcccccc------ccCcc
Confidence 8888875 6799999999999999999999999999999999999999988888888887776632100 00122
Q ss_pred hHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccc-h-hhHHHHHHHHH
Q 035548 382 AKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMR-W-GIFFFFTGWLL 459 (518)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~ 459 (518)
....+..........+.+-. ..+-++...+|.+. |.+.|+....+.+|++.-|...+...+.++ + ..++++..+.+
T Consensus 314 ~~~~~~~~l~l~~~~G~GnG-svfk~Ip~if~~~~-G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~ 391 (417)
T COG2223 314 FVVFVAVFLALFVFAGLGNG-SVFKMIPVIFPKET-GAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYL 391 (417)
T ss_pred hHHHHHHHHHHHHHhccCcc-hheeechHHHHhhh-hHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33333333344444444433 44677788887655 889999999999999999999999999998 3 35566666666
Q ss_pred HHHHHHHhc
Q 035548 460 ISLIFSATM 468 (518)
Q Consensus 460 ~~~~~~~~~ 468 (518)
++.+..+..
T Consensus 392 ~a~v~~~~~ 400 (417)
T COG2223 392 VALVLTWAL 400 (417)
T ss_pred HHHHHHHHH
Confidence 655555543
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.5e-29 Score=240.74 Aligned_cols=365 Identities=10% Similarity=0.056 Sum_probs=242.7
Q ss_pred HHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHH
Q 035548 31 AFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKP 110 (518)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~ 110 (518)
.+..++...+...+.+. +|++.++| +.+..+.++..+++.+++.++++++|+++||+|||+
T Consensus 22 ~~~~~~~~~~~~~~~p~--l~~i~~~~-----------------~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~ 82 (413)
T PRK15403 22 ILYDFAAYLTTDLIQPG--IINVVRDF-----------------NADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRP 82 (413)
T ss_pred HHHHHHHHHHHHhhccC--HHHHHHHh-----------------CCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchH
Confidence 34445555555555543 36676666 889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhh
Q 035548 111 TIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYG 190 (518)
Q Consensus 111 ~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~ 190 (518)
++..+.++++++++++.++++++.++++|+++|++.+...+...+++.|++|+++|++++++...+..+|..+||.+++.
T Consensus 83 ~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~ 162 (413)
T PRK15403 83 VLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAA 162 (413)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987777788889999999999999999999999999999999876
Q ss_pred ccccCCCcchHHHHhhhHHHHHHHHH-hhcccCChhhHHhcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccc
Q 035548 191 TSRIHPYGWRISLGGAAVPALFLLLG-SCIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHP 269 (518)
Q Consensus 191 ~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (518)
+.. ..|||+.|++.++..++..+. .+++||+++. +++... .. .....
T Consensus 163 l~~--~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~---~~~~~~-------------~~--------------~~~~~ 210 (413)
T PRK15403 163 LMH--FVHWKVLFAIIAVMGLIAFVGLLLAMPETVKR---GAVPFS-------------AK--------------SVLRD 210 (413)
T ss_pred HHH--hcCHHHHHHHHHHHHHHHHHHHHHhCCCCccc---cCCCCC-------------hH--------------HHHHH
Confidence 643 358999999988887775544 4557776431 000000 00 00112
Q ss_pred hhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHHH-cCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHH
Q 035548 270 YRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQT-MGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKIL 348 (518)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~ 348 (518)
+++.++++ +.+..... .............+.|.++++ .|+++.+.++.......+.+++..+.+.+.++..+++.
T Consensus 211 ~~~ll~~~---~~~~~~l~-~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 286 (413)
T PRK15403 211 FRNVFRNR---LFLTGAAT-LSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRF 286 (413)
T ss_pred HHHHHcCH---HHHHHHHH-HHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhH
Confidence 23344333 22222222 222233344555667777765 48999999998888888888888888877655444444
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHH
Q 035548 349 LVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTN 428 (518)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~ 428 (518)
.........++..++...... .....+..+...+++..+.+... |......-.. ....+|++.++.+...
T Consensus 287 ~~~~~~~~~ig~~l~~~~~~~--------~~~~~~~~~~~~~l~~~G~~~~~-p~~~~~al~~-~~~~~G~a~a~~~~~~ 356 (413)
T PRK15403 287 IWRAVPIQLVGLALLIVGNLL--------WPHVWLWSVLGTSLYAFGIGLIF-PTLFRFTLFS-NNLPKGTVSASLNMVI 356 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------ccccHHHHHHHHHHHHHHHHHHh-HHHHHHHhcc-CCCCCcHHHHHHHHHH
Confidence 332222333333322221100 01122222334444444444332 2222111111 1223689999999999
Q ss_pred HHHHHHHHHHhHHHHhccchhhHHHHHHHHHH
Q 035548 429 MVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLI 460 (518)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (518)
..+...++...+++.+......+....+++.+
T Consensus 357 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 388 (413)
T PRK15403 357 LMVMAVSVEIGRWLWFNGGRLPFHLLAVVAGV 388 (413)
T ss_pred HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 99999999999988776554455444444443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-29 Score=238.77 Aligned_cols=341 Identities=20% Similarity=0.239 Sum_probs=266.9
Q ss_pred HHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHH
Q 035548 31 AFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKP 110 (518)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~ 110 (518)
.++.+..+.+....++.. |.+.+++ |.+..+.+++.+...++..+++++.|+++||+|||+
T Consensus 5 ~~~~~~~~~~~~~~~~~~--~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~ 65 (352)
T cd06174 5 FLGFFLSGLDRGLLSPAL--PLLAEDL-----------------GLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRR 65 (352)
T ss_pred HHHHHHHHHhhhhhHhhH--HHHHHHc-----------------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCch
Confidence 344455556665554333 4555544 789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhh
Q 035548 111 TIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYG 190 (518)
Q Consensus 111 ~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~ 190 (518)
.+..+.++..++.+++.+.++++.+++.|++.|++.+...+...+++.|++|+++|++.+++.+....+|..+++.+++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 145 (352)
T cd06174 66 VLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGL 145 (352)
T ss_pred hhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred ccccCCCcchHHHHhhhHHHHHHHHHhhcccCChhhHHhcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccch
Q 035548 191 TSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPY 270 (518)
Q Consensus 191 ~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (518)
+... .+||+.+++.++..++..+...+++
T Consensus 146 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------- 174 (352)
T cd06174 146 LAES--LGWRWLFLILAILGLLLALLLLFLL------------------------------------------------- 174 (352)
T ss_pred HHHH--hhHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------------------
Confidence 6543 4799999998887777655554432
Q ss_pred hhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChH-H
Q 035548 271 RSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQTM-GYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKI-L 348 (518)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~-~ 348 (518)
++ ++...+..+...........+.+.+.++. |.+..+.+.......++.+++.++.+++.||++||+ .
T Consensus 175 ---------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 244 (352)
T cd06174 175 ---------RL-LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLL 244 (352)
T ss_pred ---------HH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 11 22222223333344566677777777665 899999999999999999999999999999999999 8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHH
Q 035548 349 LVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTN 428 (518)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~ 428 (518)
+..+..+..++.+.+... .+.+.......+.+.+.+ ...+....+..|..|++.|++.+|+.+...
T Consensus 245 ~~~~~~~~~i~~~~~~~~-------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (352)
T cd06174 245 LLIGLLLAALGLLLLALA-------------PSLALLLVALLLLGFGLG-FAFPALLTLASELAPPEARGTASGLFNTFG 310 (352)
T ss_pred HHHHHHHHHHHHHHHHHh-------------ccHHHHHHHHHHHHHHHh-ccchhHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence 888877777777666542 123333334444444433 334566778899999999999999999999
Q ss_pred HHHHHHHHHHhHHHHhccchhhHHHHHHHHHHHHHHH
Q 035548 429 MVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLISLIFS 465 (518)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (518)
.++..+++.+.+.+.+..++...+....+..+...+.
T Consensus 311 ~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~ 347 (352)
T cd06174 311 SLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALL 347 (352)
T ss_pred HHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHH
Confidence 9999999999999998877655444444444333333
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-29 Score=241.52 Aligned_cols=318 Identities=15% Similarity=0.150 Sum_probs=221.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhh
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVP 154 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (518)
|+++.+.+++.+++.++..++++++|+++||+|||+++..+.++.+++.+++.++++++.+++.|++.|++.+...+...
T Consensus 22 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 101 (377)
T PRK11102 22 GVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVIN 101 (377)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHH-HhhcccCChhhHHhcCCh
Q 035548 155 LFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLL-GSCIIVETPASLIERGKQ 233 (518)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~ 233 (518)
+++.|++|+++|++++++.+.+..+|..++|.+++.+.. ..+||+.|++.+++.++..+ ..+++||+++.. ++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~- 175 (377)
T PRK11102 102 ALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLV--WFSWHAIFWVLALAAILAAALVFFFIPETLPKE---RR- 175 (377)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcChHHHHHHHHHHHHHHHHHHHHhCCccCccc---cc-
Confidence 999999999999999999999999999999999766643 35899999988887776543 445566654210 00
Q ss_pred hHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHH-HHcC
Q 035548 234 EQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLF-QTMG 312 (518)
Q Consensus 234 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g 312 (518)
++ .+.++ ...++++.++++.. +...... ...+........+.|.++ +..|
T Consensus 176 ~~-----------~~~~~--------------~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g 226 (377)
T PRK11102 176 QP-----------FHLRT--------------TIRNFASLFRHKRV---LGYMLAS-GFSFAGMFSFLTAGPFVYIELNG 226 (377)
T ss_pred CC-----------CChHH--------------HHHHHHHHHcChHH---HHHHHHH-HHHHHHHHHHHHcCHHHHHHHhC
Confidence 00 00000 00112233333222 2222222 222223334444445444 5579
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHH
Q 035548 313 YGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVF 392 (518)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (518)
+++.+.+.......++.+++.++.+++.||+++|+.+..+.....+..+.+..... .+...+.......++
T Consensus 227 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 297 (377)
T PRK11102 227 VSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSAL---------LDLGFWALVVGVAAF 297 (377)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH---------HhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888777654443333222111 111222222222223
Q ss_pred HHhhhccccccceeeecccCChhhhhhHHHHHHHHHH-HHHHHHHHH
Q 035548 393 VAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNM-VFTFVIAQA 438 (518)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~-~~~~~~~~~ 438 (518)
..+.... .+.......|..| +.++++.++.+.... ++..+++.+
T Consensus 298 ~~~~~~~-~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~ 342 (377)
T PRK11102 298 VGCVSMI-SSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALL 342 (377)
T ss_pred HHHHHHh-hHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222 1222344567666 778999988877654 444444444
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=240.75 Aligned_cols=323 Identities=14% Similarity=0.149 Sum_probs=233.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhh
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVP 154 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (518)
|.++.+.+++.+++.++..++++++|+++||+|||+++..+.++..++.+++.++++++.+++.|+++|++.+...+...
T Consensus 37 ~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~ 116 (401)
T PRK11043 37 QTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQ 116 (401)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred hHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccCChhhHHhcCChh
Q 035548 155 LFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQE 234 (518)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~ 234 (518)
+++.|+++++++++..+.......+|..++|.+++.+.. ..+||+.|++.++..++..+..++++|+++. ++ +
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~ 189 (401)
T PRK11043 117 ALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLN--HFGWQAIFATLFAITLLLILPTLRLKPSKKA----RK-Q 189 (401)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCChHHHHHHHHHHHHHHHHHHHHcCCCCCc----cc-c
Confidence 999999999999999999988899999999999776643 3589999998888877766666566654421 00 0
Q ss_pred HHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCC
Q 035548 235 QGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQTMGYG 314 (518)
Q Consensus 235 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 314 (518)
+ +++.++++.++++..+.......+ ....+.....+.|.++++.|++
T Consensus 190 ~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~p~~~~~~g~s 236 (401)
T PRK11043 190 S-----------------------------QDALTFKQLLKSKTYLGNVLIFAA----CSAAFFAWLTGSPFILEQMGYS 236 (401)
T ss_pred c-----------------------------hHHHHHHHHHcChhHHHHHHHHHH----HHHHHHHHHHHhHHHHHHcCCC
Confidence 0 001122333333322221221111 1122334556678888888999
Q ss_pred ChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHH
Q 035548 315 SNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVA 394 (518)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (518)
..+.++......++.+++.++.+++.||+++|+..........++.+.+...... .....+..+....+.+.
T Consensus 237 ~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 308 (401)
T PRK11043 237 PADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLL--------SHPSLVPLLIPFCVMAA 308 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHh--------ccCcHHHHHHHHHHHHH
Confidence 9999988888888999999999999999999887665555544444333222110 11222222222333333
Q ss_pred hhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccc
Q 035548 395 GFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMR 447 (518)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (518)
+.+. ..+.......+..| +.++++.|+.+.....++..++.+.+.+.+...
T Consensus 309 ~~~~-~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~ 359 (401)
T PRK11043 309 ANGA-IYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTPL 359 (401)
T ss_pred HHHH-HHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCCh
Confidence 3332 22344444456666 568999999999999999999999999877543
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-30 Score=246.85 Aligned_cols=324 Identities=20% Similarity=0.286 Sum_probs=235.7
Q ss_pred cccCCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccc
Q 035548 72 NYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQ 151 (518)
Q Consensus 72 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 151 (518)
+++|.+..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++..++++++.+++.|++.|++.+...+
T Consensus 25 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 104 (352)
T PF07690_consen 25 EELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSP 104 (352)
T ss_dssp CCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccc
Confidence 33489999999999999999999999999999999999999999999999977777778888999999999999999999
Q ss_pred hhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHH-hhcccCChhhHHhc
Q 035548 152 AVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLG-SCIIVETPASLIER 230 (518)
Q Consensus 152 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~ 230 (518)
...+++.|++|+++|++++++.+.+..+|.++++.+++.+. +..+||+.|++.+++.++..++ ..+++++|+....+
T Consensus 105 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~--~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~ 182 (352)
T PF07690_consen 105 ASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLI--SYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERE 182 (352)
T ss_dssp HHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--
T ss_pred cccccccccchhhhhhhccccccchhhhhhhcccchhhhhh--hccccccccccccchhhhhhhhHhhhhhhcccccccc
Confidence 99999999999999999999999999999999999987775 3358999999999988886654 34455444221111
Q ss_pred CChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhccccc-chhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHH-H
Q 035548 231 GKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKH-PYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVL-F 308 (518)
Q Consensus 231 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 308 (518)
.+.++. ++.+++.. .++..++++..+..+.. .+...........+.|.+ .
T Consensus 183 ~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~ 234 (352)
T PF07690_consen 183 SPKESE------------------------SKKPKPLKPGFKSLFKNPVLWILLIA----FFLFFFVFSGFSFFLPLYLQ 234 (352)
T ss_dssp SSTTTT--------------------------HHHCCCH-CTHHHHHHCCHHHHHH----HHHHHHHHHHHHHHHHHHCC
T ss_pred cccccc------------------------cccccccccccccccccchhhhhhhh----hhHHHHHHHHhhcccchhhh
Confidence 111100 00000011 13334433333212222 222222344577778877 5
Q ss_pred HHcCCC-ChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHH
Q 035548 309 QTMGYG-SNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVI 387 (518)
Q Consensus 309 ~~~g~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (518)
+.+|++ ..+.+.......+..+++.++.+++.||+++|+..........+..+.+.+... ..+....+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~ 304 (352)
T PF07690_consen 235 EVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPF----------SSSPVWLII 304 (352)
T ss_dssp HHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHH----------HCHHHHHHH
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH----------hhhHHHHHH
Confidence 677888 788898999999999999999999999999988777666665555555443221 112233333
Q ss_pred HHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHH
Q 035548 388 LVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIA 436 (518)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~ 436 (518)
...+.+.+.+.. .+....+..|..|++.+|++.|+.+...+++..++|
T Consensus 305 ~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 305 ALFLIGFGFGIV-FPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHH-CHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 444444433333 456667889999999999999999999999999887
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.7e-29 Score=239.42 Aligned_cols=341 Identities=13% Similarity=0.113 Sum_probs=234.7
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHH-HHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccch
Q 035548 74 CKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQ-AASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQA 152 (518)
Q Consensus 74 ~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~-~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 152 (518)
+|.+..+.|++.+++.++..+.+++.|+++||+||||.++ .+.++..++.++++++++++.+++.|+++|.+.+...|.
T Consensus 28 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~ 107 (375)
T TIGR00899 28 VRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANPQ 107 (375)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHH
Confidence 4899999999999999999999999999999999988765 456666777788899999999999999999888888888
Q ss_pred hhhHHHhcCCCCcchhH--HhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHH-hhcccCChhhHHh
Q 035548 153 VPLFISEIAPPKYRGGL--NICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLG-SCIIVETPASLIE 229 (518)
Q Consensus 153 ~~~~i~~~~~~~~r~~~--~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~ 229 (518)
..+++.|+.++++|++. .+....+.++|..+++.+++.+.. ..+||+.|++.++..++..+. ++++||+|++..+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (375)
T TIGR00899 108 LFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLAL--GFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPG 185 (375)
T ss_pred HHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHH--hcccHHHHHHHHHHHHHHHHHHHHhCCCcccCccc
Confidence 88999999887777654 577888889999999999776643 358999999998877765544 4457876632100
Q ss_pred cCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHH-
Q 035548 230 RGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLF- 308 (518)
Q Consensus 230 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 308 (518)
+. .+.+.++.++++..+......++... .......+.|.++
T Consensus 186 ~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 227 (375)
T TIGR00899 186 AL----------------------------------TRLEVRGLLASRDTRLLFVACTLMWG----CNILYIINMPLLII 227 (375)
T ss_pred cc----------------------------------CcchhhhhhcCcchHHHHHHHHHHHH----HHHHHHhhhHHHHH
Confidence 00 00011122232322222222222111 1223334455555
Q ss_pred HHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHH
Q 035548 309 QTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVIL 388 (518)
Q Consensus 309 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (518)
++.|.++.+.+..........+++.++.+++.||++||+.+..+.....+....+... .+.+.....
T Consensus 228 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~ 294 (375)
T TIGR00899 228 HELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD-------------NSLWALLML 294 (375)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHH
Confidence 5679998888888877777788889999999999999998877655444333322221 122222323
Q ss_pred HHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHHHHHHHhc
Q 035548 389 VCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLISLIFSATM 468 (518)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (518)
..+.+.+.+.. .+....+..|..|++ ++++.++.+...+++..++|.+.|.+.+..++...+...+++.+.+.+...+
T Consensus 295 ~~~~g~~~g~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 372 (375)
T TIGR00899 295 QLLNAIFIGIL-AGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLL 372 (375)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence 33333333322 234455677888765 5799999999999999999999999999888665555555444444444444
Q ss_pred c
Q 035548 469 L 469 (518)
Q Consensus 469 ~ 469 (518)
+
T Consensus 373 ~ 373 (375)
T TIGR00899 373 I 373 (375)
T ss_pred e
Confidence 4
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.8e-30 Score=245.73 Aligned_cols=299 Identities=14% Similarity=0.135 Sum_probs=220.2
Q ss_pred HHHHHHHHHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHHHHHHHHHhhHHh
Q 035548 23 VLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLASIV 102 (518)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~G~l 102 (518)
.+.++..++...+....|...++....+ ...+|.+....+.+.+.++++++++++++++|.+
T Consensus 43 dl~i~~~~~~~y~~~~~d~~si~~a~l~------------------g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L 104 (495)
T KOG2533|consen 43 DLFILPFLCYLYFHAYLDKSSIVNASLS------------------GLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLL 104 (495)
T ss_pred HHHHHHHHHHHHHHHhcchhcchhHHHc------------------CCccccchhhhhhhhHHHHHHHHHHHHHhhHHHH
Confidence 3555566666667777777665433211 1345668899999999999999999999999999
Q ss_pred hhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchhHHhHHHHHHHHHHH
Q 035548 103 CRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGIL 182 (518)
Q Consensus 103 ~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ 182 (518)
.||++-.+.+....+++++..++....+|++.+++.|++.|+.++..+|....+++.|+.+++|++.++++.++.++|.+
T Consensus 105 ~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i 184 (495)
T KOG2533|consen 105 GDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNI 184 (495)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhH
Confidence 99999999999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccc----CCCcchHHHHhhhHHHHHHH-HHhhcccCChhh--HHhcCChhHHHHHHHhhhCCccHHHHHHH
Q 035548 183 AANLINYGTSRI----HPYGWRISLGGAAVPALFLL-LGSCIIVETPAS--LIERGKQEQGLYTLRKIRGVKDVEKEYAE 255 (518)
Q Consensus 183 i~~~i~~~~~~~----~~~~wr~~f~~~~~~~~~~~-~~~~~~~e~p~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 255 (518)
+|+++++.+... ...||||.|++.++++++.. +..+++|++|.. ..++.+++-..+ +
T Consensus 185 ~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~----------------~ 248 (495)
T KOG2533|consen 185 FGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVE----------------R 248 (495)
T ss_pred HHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHH----------------H
Confidence 999999885431 22699999999999988854 566779998862 111111111000 0
Q ss_pred HHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHHH-cCCCChHHHHHHHHHHHHHHHHhh
Q 035548 256 ICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQT-MGYGSNASLLSAVISGTINVASTL 334 (518)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~ 334 (518)
.++.......++.++.+..+..+.++++...+..+ +.....+.+.+|.|.++++ .|++..++..+..+..++++++.+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~-~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i 327 (495)
T KOG2533|consen 249 LRESPSGGIENKFKWKGFKEALKDPGVWPFSLCYF-FLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLI 327 (495)
T ss_pred HHhccCCCcccccCHHHHHHHHhchhHHHHHHHHH-HHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHH
Confidence 00000011111123333333333334333333333 3344566788999999988 579999999999999999999999
Q ss_pred hhhhhhhcc----CChHHHHHhHHHH
Q 035548 335 VAIVLVDKA----GRKILLVQAAIQM 356 (518)
Q Consensus 335 ~~g~l~d~~----~~~~~~~~~~~~~ 356 (518)
++|+++||+ .+|........+.
T Consensus 328 ~ag~lsdr~~~~~~~~~~~~~~~~~~ 353 (495)
T KOG2533|consen 328 LAGYLSDRLKTIFARRLLFIVFLCLY 353 (495)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 999999994 4554444443333
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-28 Score=236.47 Aligned_cols=319 Identities=15% Similarity=0.213 Sum_probs=219.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhh
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVP 154 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (518)
|.+..+.++..+.+.++..+++++.|+++||+|||+++..+.++..++.+++.++++++.+++.|+++|++.+...+...
T Consensus 34 ~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 113 (392)
T PRK10473 34 NASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAF 113 (392)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHH-hhcccCChhhHHhcCCh
Q 035548 155 LFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLG-SCIIVETPASLIERGKQ 233 (518)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~ 233 (518)
+++.|++|+++|+++.++.+....+|..++|.+++.+.. ..+||+.|++.++..++..+. .++++|+++.. .+
T Consensus 114 ~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~--~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~- 187 (392)
T PRK10473 114 AILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIML--KFPWQSLFYTMAAMGILVLLLSLFILKETRPAR---AP- 187 (392)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CcChHHHHHHHHHHHHHHHHHHHHHcCCCCCcc---cC-
Confidence 999999999999999999999999999999999766542 358999999988877664443 45566654210 00
Q ss_pred hHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHH-HHcC
Q 035548 234 EQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLF-QTMG 312 (518)
Q Consensus 234 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g 312 (518)
++ .. . ....++.++++..........+. .........+.|.++ ++.|
T Consensus 188 ~~-----------~~---~--------------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g 235 (392)
T PRK10473 188 AA-----------SS---K--------------PRENSESLLNRFFLSRLVITTLS----VTVILTFVNTSPVLLMEQMG 235 (392)
T ss_pred Cc-----------cc---h--------------HHHHHHHHhCHHHHHHHHHHHHH----HHHHHHHHHhCHHHHHHHcC
Confidence 00 00 0 00011222222211111111111 111222334445554 5679
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHH
Q 035548 313 YGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVF 392 (518)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (518)
++..+.+......+++.+++.++.+++.||++||+.+..+..+..++.+.+.... . .+.......+.
T Consensus 236 ~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~------------~-~~~~~~~~~l~ 302 (392)
T PRK10473 236 FSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSP------------S-HAVSLFGITLI 302 (392)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH------------H-HHHHHHHHHHH
Confidence 9988889999999999999999999999999999998888776666665554421 1 11222222222
Q ss_pred HHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchhh
Q 035548 393 VAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWGI 450 (518)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (518)
..+++.+.. . ....+..|.+.|+ |.......++..+++.+.+.+.+..++..
T Consensus 303 ~~g~~~~~~-~--~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~ 354 (392)
T PRK10473 303 CAGFSVGFG-V--AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISA 354 (392)
T ss_pred HHHHHHHhH-H--HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 333332221 1 1223444544433 33344455666777777777777666543
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-28 Score=236.31 Aligned_cols=347 Identities=12% Similarity=0.056 Sum_probs=245.0
Q ss_pred HHHHHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 035548 27 SIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKF 106 (518)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~ 106 (518)
...+++..+..|+..+..+++. |.++++| |++..+.|++.+.+++++.+++++.|++.||+
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~--~~~~~~~-----------------~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~ 65 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMV--PQFQQAF-----------------TLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL 65 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHH--HHHHHHh-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566788888888777655 6777776 89999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHh---hccHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchhHHhHHHHHHHHHHHH
Q 035548 107 GRKPTIQAASVFFLIGAILNCL---AQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILA 183 (518)
Q Consensus 107 Grr~~l~~~~~l~~~~~~~~~~---~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i 183 (518)
|||+++..+.++++++.+++.. .++++.+++.|++.|+|.|...+....++.+..|+++|++.+++.+...++|..+
T Consensus 66 G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~ 145 (410)
T TIGR00885 66 SYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSII 145 (410)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988644 4689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccccC------------------------CCcchHHHHhhhHHHHHHHHHhhc--ccCChhhHHhcCChhHHH
Q 035548 184 ANLINYGTSRIH------------------------PYGWRISLGGAAVPALFLLLGSCI--IVETPASLIERGKQEQGL 237 (518)
Q Consensus 184 ~~~i~~~~~~~~------------------------~~~wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~a~ 237 (518)
++.++..+.... ..+||++|++.+++.++..+...+ .|+.++ . ++
T Consensus 146 g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-----~--~~-- 216 (410)
T TIGR00885 146 GMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH-----S--DA-- 216 (410)
T ss_pred HHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----c--cc--
Confidence 999876553221 136999998888877665444433 332110 0 00
Q ss_pred HHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHc--CCCC
Q 035548 238 YTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQTM--GYGS 315 (518)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~ 315 (518)
++.....+.++.++++..+...+..++. .........+.+.+.++. +.+.
T Consensus 217 ------------------------~~~~~~~~~~~~~~~~~~~~~~l~~f~y----vg~e~~~~s~l~~y~~~~~~~~~~ 268 (410)
T TIGR00885 217 ------------------------KQISFSASLSRLARIRHYREGVIAQFFY----VGVQIMCWTFIIQYAVRLIPGMTA 268 (410)
T ss_pred ------------------------ccccchhhHHHHHhChhHHHHHHHHHHH----HHHHHHHHHHHHHHHhhccCCCCH
Confidence 0000011222333333333322222222 222333445666666654 3344
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHh
Q 035548 316 NASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAG 395 (518)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (518)
..+.........+..+|+++++++.||+++|+.+.+...+..+..++.... +. ........+.+.+
T Consensus 269 ~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~------------~~--~~~~~~l~~~glf 334 (410)
T TIGR00885 269 GFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFA------------GG--HVGLYCLTLCSAF 334 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc------------CC--hHHHHHHHHHHHH
Confidence 444555666667888999999999999999998877776666665555442 11 1223344444444
Q ss_pred hhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhcc
Q 035548 396 FAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKM 446 (518)
Q Consensus 396 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 446 (518)
.+..+ |..++...+..+++.+..+.++.... +|+.+.|++.|.+.|..
T Consensus 335 ~s~~f-p~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~ 382 (410)
T TIGR00885 335 MSLMF-PTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMK 382 (410)
T ss_pred HHHHH-HHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHh
Confidence 44444 66777788888877755455554443 99999999999999954
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-28 Score=236.70 Aligned_cols=341 Identities=13% Similarity=0.042 Sum_probs=233.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhh
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVP 154 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (518)
+.+..+.+++.+.+.+++.++++++|+++||+|||++++++.++..++++++.++++. ++.|+++|++.+...|+..
T Consensus 34 ~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~ 110 (393)
T PRK11195 34 HYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKY 110 (393)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 7788899999999999999999999999999999999999999999998888777664 7889999999999999999
Q ss_pred hHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccCChhhHHhcCChh
Q 035548 155 LFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQE 234 (518)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~ 234 (518)
+++.|++|+++|++++++.+....+|.++||.+++.+... .|+..+.+.+...++..+..+.+||+|++...++ +
T Consensus 111 a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~---~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~--~ 185 (393)
T PRK11195 111 GILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP---HAEAALAVCALIYLLAALFNLFIPRLGARRPGQS--W 185 (393)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCCcccccccC--C
Confidence 9999999999999999999999999999999998877652 4777777766655555555667787653211000 0
Q ss_pred HHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHH-HcCC
Q 035548 235 QGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQ-TMGY 313 (518)
Q Consensus 235 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~ 313 (518)
+..+. .++. ...++.+++++..+.......+... ......+..+.+.+ .+|.
T Consensus 186 ~~~~~-------------~~~~----------~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~lg~ 238 (393)
T PRK11195 186 NPIAL-------------LRDF----------FHACRVLWRDKLGRFSLAGTTLFWG----AGATLRFLVLAWAPVALGI 238 (393)
T ss_pred CHHHH-------------HHHH----------HHHHHHHHhCchhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCC
Confidence 00000 0000 0012233444433332222222111 12233334444444 4699
Q ss_pred CChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHH
Q 035548 314 GSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFV 393 (518)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (518)
++.+.+......+++.++++++.+++.||.++++.+..+.. .++....+.. ..+.+.......+.+
T Consensus 239 s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~-------------~~~~~~~~~~~~~~G 304 (393)
T PRK11195 239 TLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMAL-------------QHSLLPAYPLLILIG 304 (393)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHH-------------HhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988877765532 2222222221 122233333333444
Q ss_pred HhhhccccccceeeecccCChhh-hhhHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHHHHHHH
Q 035548 394 AGFAWSWGPICWLISSEIYPLET-RNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLISLIFSA 466 (518)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~p~~~-r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (518)
.+.+....+ ..+...+..|++. +|++.++.+...+++..++..+.+.+ +..+-.....+.+++.+......
T Consensus 305 ~~~g~~~~~-~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 376 (393)
T PRK11195 305 ALGGFFVVP-MNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMA 376 (393)
T ss_pred Hhhhhhhhh-HHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHH
Confidence 444333333 3345567766654 79999999999999999999998855 56665544555444444444433
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-28 Score=242.12 Aligned_cols=352 Identities=11% Similarity=0.087 Sum_probs=237.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhh-----ccHHH-HHHHHHHHHHHHHHHHhh---ccHHHHHHHHHHhhhh
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKF-----GRKPT-IQAASVFFLIGAILNCLA---QNLGMLIAGRLSLGIG 145 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~-----Grr~~-l~~~~~l~~~~~~~~~~~---~~~~~l~~~r~l~G~~ 145 (518)
|.+..+++.+ +.....+ ++.+++|+++||+ ||||. +..+.++.+++..++++. ++++.+.+.|++.|++
T Consensus 43 g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~ 120 (491)
T PRK11010 43 NIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFC 120 (491)
T ss_pred CCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Confidence 7888899987 4444444 6899999999999 99885 667777777777777775 4788999999999999
Q ss_pred hhcccchhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccCChh
Q 035548 146 VGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPA 225 (518)
Q Consensus 146 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~ 225 (518)
.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+... ..|||..|++.++..++..+..++.||+++
T Consensus 121 ~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~-~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~ 199 (491)
T PRK11010 121 SASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADR-YLGWQGMYWLMAALLIPCIIATLLAPEPTD 199 (491)
T ss_pred HHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 9999999999999999999999999999999999999999887665431 258999999998887776666666777542
Q ss_pred hHHhcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHH
Q 035548 226 SLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAP 305 (518)
Q Consensus 226 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (518)
.. .+ ++ +. + +....++++.++++..+......++. ............|
T Consensus 200 ~~---~~-~~------------~~--------~-----~~~~~~l~~~~~~~~~~~~ll~~~l~---~~~~~~~~~~~~~ 247 (491)
T PRK11010 200 TI---PV-PK------------TL--------E-----QAVVAPLRDFFGRNNAWLILLLIVLY---KLGDAFAMSLTTT 247 (491)
T ss_pred cc---cc-cc------------ch--------h-----hhHHHHHHHHHcCcCHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 10 00 00 00 0 00011234444433333322222211 1111122233344
Q ss_pred HHHHHcCCCChHHHHHHH-HHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHH
Q 035548 306 VLFQTMGYGSNASLLSAV-ISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKV 384 (518)
Q Consensus 306 ~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (518)
++.++.|++..+.+.... ...++.+++.+++|+++||+++|+.+..+.++..+..+.+..... ...+.+.
T Consensus 248 ~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~---------~~~~~~~ 318 (491)
T PRK11010 248 FLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSI---------TDKNLYS 318 (491)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh---------ccccHHH
Confidence 444668999999998874 556899999999999999999988777665554444433322111 1112222
Q ss_pred HHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHHHHH
Q 035548 385 VVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLISLIF 464 (518)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (518)
......+.....+... +..+.+..+..+++.+++.+|+.+....++..+++.+.|.+.|..|+...+.+..++.+.+++
T Consensus 319 l~~~~~l~~~~~g~~~-~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~ 397 (491)
T PRK11010 319 MGAAVFFENLCGGMGT-AAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLL 397 (491)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 2212222111111111 223456678888888899999999999999999999999999998887666666666555555
Q ss_pred HHhcccC
Q 035548 465 SATMLPE 471 (518)
Q Consensus 465 ~~~~~~~ 471 (518)
.....++
T Consensus 398 ~~~~~~~ 404 (491)
T PRK11010 398 LLLVCRQ 404 (491)
T ss_pred HHHHHHh
Confidence 5554544
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-28 Score=236.27 Aligned_cols=333 Identities=10% Similarity=0.056 Sum_probs=234.9
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchh
Q 035548 74 CKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAV 153 (518)
Q Consensus 74 ~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 153 (518)
+|++..++|++.+++.+++.+++++.|+++||+|||+++.++.++..++.++.+++++++.++++|++.|.+.+...+..
T Consensus 38 ~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 117 (395)
T PRK10054 38 YSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVL 117 (395)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999999999999998888888889
Q ss_pred hhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHH-hhcccCChhhHHhcCC
Q 035548 154 PLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLG-SCIIVETPASLIERGK 232 (518)
Q Consensus 154 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~ 232 (518)
.++..|.+|+++|++++++.....++|.+++|.+++.+.. .+||..|++.++..++..+. .+++||+++. ++
T Consensus 118 ~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~---~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~----~~ 190 (395)
T PRK10054 118 KAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM---QSINLPFWLAAICSAFPLVFIQIWVQRSEKA----IA 190 (395)
T ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccCcHHHHHHHHHHHHHHHHHHHHhccccc----cc
Confidence 9999999999999999999999999999999999887653 48999999888777665443 3445554310 00
Q ss_pred hhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHH---H
Q 035548 233 QEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLF---Q 309 (518)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 309 (518)
.++ + + ..+.++.++++..+......++.... ......+.+.+. +
T Consensus 191 ~~~----------------------~--~-----~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~ 237 (395)
T PRK10054 191 TET----------------------G--S-----VWSPSVLLQDKALLWFTCSGFLASFV----SGAFASCISQYVMVVA 237 (395)
T ss_pred cch----------------------h--h-----hhhhhhhccCceehHHHHHHHHHHHH----HHHhhhhHHHHHHHhc
Confidence 000 0 0 00112333433333322222222111 122222333333 2
Q ss_pred HcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHH
Q 035548 310 TMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILV 389 (518)
Q Consensus 310 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (518)
+.+.+....+.......+.........+++.||.++|+.+..+.....++...+... .++.+......
T Consensus 238 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~ 305 (395)
T PRK10054 238 DSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFS------------GNSLLLWGMSA 305 (395)
T ss_pred ccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHc------------chHHHHHHHHH
Confidence 335555666777777777777777888999999999998887776666665554431 12223333334
Q ss_pred HHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHH
Q 035548 390 CVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLI 460 (518)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (518)
.+++.+.. ...|.....+.+..|++.++++.+..+ ...+|..++|.+.|.+.|+.++...+.....+..
T Consensus 306 ~~~~~g~~-~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~ 374 (395)
T PRK10054 306 AVFTVGEI-IYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIV 374 (395)
T ss_pred HHHHHHHH-HHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHH
Confidence 44444432 223455566788899999999988654 6778999999999999999986655544433333
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-28 Score=234.56 Aligned_cols=319 Identities=11% Similarity=0.098 Sum_probs=229.1
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchh
Q 035548 74 CKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAV 153 (518)
Q Consensus 74 ~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 153 (518)
+|++..++|++.+...++..+.+++.|+++||+|||+++..+.++..++.+++.++++++.+++.|+++|++.+...+..
T Consensus 41 ~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~ 120 (400)
T PRK11646 41 LGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPR 120 (400)
T ss_pred hCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred hhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHH-HhhcccCChhhHHhcCC
Q 035548 154 PLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLL-GSCIIVETPASLIERGK 232 (518)
Q Consensus 154 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~ 232 (518)
.+++.|++|+++|++++++......+|..+||.+++.+. .++||+.|++.++..++..+ ..++.||.+. .+
T Consensus 121 ~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~---~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~-----~~ 192 (400)
T PRK11646 121 TALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL---QYDFRLVCATGAVLFVLAAAFNAWLLPAYKL-----ST 192 (400)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHhCCcccc-----cc
Confidence 999999999999999999999999999999999987776 25899999988877666443 3344554210 00
Q ss_pred hhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcC
Q 035548 233 QEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQTMG 312 (518)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 312 (518)
.++ +.+.++++.++++......... .. ..........+.|.+.++.+
T Consensus 193 ~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~p~~~~~~~ 239 (400)
T PRK11646 193 VRT-----------------------------PVREGMTRVLRDKRFVTYVLTL---TG-YYMLAVQVMLMLPIMVNDIA 239 (400)
T ss_pred cch-----------------------------hhHHHHHHHHcCchHHHHHHHH---HH-HHHHHHHHHHhhhhhHHhhc
Confidence 000 0011233333333222211111 11 11112223456788887766
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhhhhhhh-ccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHH
Q 035548 313 YGSNASLLSAVISGTINVASTLVAIVLVD-KAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCV 391 (518)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (518)
.++.+.+......+++...+....+++.| |.+.++.+..+..+.+++..++... ++.+.......+
T Consensus 240 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~-------------~~~~~~~~~~~l 306 (400)
T PRK11646 240 GSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV-------------SNLQQLFTLICL 306 (400)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh-------------hhHHHHHHHHHH
Confidence 67778888877777776666555566555 4565665666655555555444331 122222233333
Q ss_pred HHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccc
Q 035548 392 FVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMR 447 (518)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (518)
+..+... ..|...++..+..|++.||++.|+.+....++..++|.+.|.+.|..+
T Consensus 307 ~~~g~~~-~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~ 361 (400)
T PRK11646 307 FYIGSII-AEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGK 361 (400)
T ss_pred HHHHHHH-HHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence 3333332 224445677899999999999999999999999999999999998753
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-27 Score=228.67 Aligned_cols=341 Identities=11% Similarity=0.096 Sum_probs=220.7
Q ss_pred cCCChhHHHHHHHHHHH-HHHHHHHhhHHhhhhhccHHHH-HHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccc
Q 035548 74 CKYDNQYLQLFTSSLYL-AAIVACFLASIVCRKFGRKPTI-QAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQ 151 (518)
Q Consensus 74 ~~~s~~~~~~~~s~~~l-~~~i~~~~~G~l~dr~Grr~~l-~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 151 (518)
+|++.+++|++.+...+ ++.++.++.|+ +||+||||.+ ..+.++.+++..+.+++++++.+++.+.+.|...+...|
T Consensus 46 ~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 124 (393)
T PRK15011 46 VHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANP 124 (393)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 48999999999877655 55566655565 9999999875 456666677788888999999887776655555567788
Q ss_pred hhhhHHHhcCCCCcc--hhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHH-hhcccCChhhHH
Q 035548 152 AVPLFISEIAPPKYR--GGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLG-SCIIVETPASLI 228 (518)
Q Consensus 152 ~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~ 228 (518)
...+++.++.++++| +...++.+.+.++|.+++|++++.+.. ..|||..|++.++..++..+. .+++||+++..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~--~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~- 201 (393)
T PRK15011 125 QMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAM--GFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKEL- 201 (393)
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHH--hcChHHHHHHHHHHHHHHHHHHHhhcCccCCCC-
Confidence 888888998877655 345578889999999999999877653 359999999988877765444 45577754210
Q ss_pred hcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHH
Q 035548 229 ERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLF 308 (518)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (518)
+ ++ ++ +.+...+++ +..+......... ...+.....+.|.++
T Consensus 202 ---~-~~---------------------------~~----~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~p~~l 243 (393)
T PRK15011 202 ---P-LA---------------------------TG----TLEAPRRNR--RDTLLLFVICTLM-WGTNSLYIINMPLFI 243 (393)
T ss_pred ---c-cc---------------------------cc----ccccccccc--ccHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 0 00 00 000000111 1111111111221 222334455677666
Q ss_pred -HHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHH
Q 035548 309 -QTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVI 387 (518)
Q Consensus 309 -~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (518)
+++|++..+.+.......++.+++.++.|+++||++||+.+..+.....+....+.. . .+.+..+.
T Consensus 244 ~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~------------~-~~~~~~l~ 310 (393)
T PRK15011 244 INELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLM------------A-HSPAILLG 310 (393)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH------------H-hhHHHHHH
Confidence 457999888888888777888889999999999999998776655444333222211 1 12222222
Q ss_pred HHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHHHHHHHh
Q 035548 388 LVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLISLIFSAT 467 (518)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (518)
...+.....+... +....+..|..|+ .++++.++.+...++|..+++.+.|.+.+..++...+....++.+..++..+
T Consensus 311 ~~~l~~~~~g~~~-~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK15011 311 LQLLNAIYIGILG-GIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLL 388 (393)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 2222222222111 1223445788885 4899999999999999999999999999988876555555555555555555
Q ss_pred cccC
Q 035548 468 MLPE 471 (518)
Q Consensus 468 ~~~~ 471 (518)
..||
T Consensus 389 ~~~~ 392 (393)
T PRK15011 389 RIKD 392 (393)
T ss_pred hhcC
Confidence 5543
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-27 Score=226.69 Aligned_cols=318 Identities=16% Similarity=0.135 Sum_probs=225.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhh
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVP 154 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (518)
|++..+.+++.+++.+++.+++++.|+++||+|||+++.++.++..++.+.+ .+++++.+++.|++.|++.+...+...
T Consensus 31 ~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~~~~~~~ 109 (355)
T TIGR00896 31 GMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAIINVLLP 109 (355)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHhccch
Confidence 9999999999999999999999999999999999999999999988888877 788999999999999999999888888
Q ss_pred hHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccCChhhHHhcCChh
Q 035548 155 LFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQE 234 (518)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~ 234 (518)
.++.|+++ ++|++++++.+.+.++|..+++.++..+......+||+.|.+.++..++... .++|+.++. .+
T Consensus 110 ~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~--~~~~~~~~~------~~ 180 (355)
T TIGR00896 110 SLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL--AWIPQVRRR------VA 180 (355)
T ss_pred HHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--HHhhhhccc------cC
Confidence 89999886 5799999999999999999999887655433223499998776665444322 223432210 00
Q ss_pred HHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCC
Q 035548 235 QGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQTMGYG 314 (518)
Q Consensus 235 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 314 (518)
++++..+...++.++++..+. . .+........+.....+.|.++++.|++
T Consensus 181 --------------------------~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~lp~~~~~~g~~ 230 (355)
T TIGR00896 181 --------------------------ANQTTTRLTPVRIWRSPLAWQ---V-TVFFGLQSGLYYSLIGWLPAILISHGAS 230 (355)
T ss_pred --------------------------CCCCCCCCCCchhhcCHhHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 000000112233333332222 1 2222222233455667888888888999
Q ss_pred ChHHHHHHHHHHHHHHHHhhhhhhhhhcc-CChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHH
Q 035548 315 SNASLLSAVISGTINVASTLVAIVLVDKA-GRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFV 393 (518)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (518)
..+.+...+...++.++++++.+++.||+ +||+.+..+..+..++.+.+.+. +... .. . ...+++
T Consensus 231 ~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~-~~-~-~~~l~g 296 (355)
T TIGR00896 231 AATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFA-----------PMHG-LW-A-WALVLG 296 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHh-----------hhhH-HH-H-HHHHHH
Confidence 99999999999999999999999999999 45656666666666655544432 1111 11 1 223333
Q ss_pred Hhhhccccccceeeec-ccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccc
Q 035548 394 AGFAWSWGPICWLISS-EIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMR 447 (518)
Q Consensus 394 ~~~~~~~~~~~~~~~~-~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (518)
.+.+.. .+....... +..+++.++...++.+..+.++..++|.+.|.+.|+.+
T Consensus 297 ~~~g~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 297 LGQGGA-FPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HhhhhH-hHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333222 233333333 34456777899999999999999999999999999876
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-27 Score=229.02 Aligned_cols=321 Identities=15% Similarity=0.124 Sum_probs=223.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhh
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVP 154 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (518)
|+++.+.+++.+++.++..++++++|+++||+|||+++..+.++..++.+++.++++++.+++.|++.|++.+...+...
T Consensus 39 ~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~ 118 (394)
T PRK11652 39 NVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMAR 118 (394)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred hHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHH-HHhhcccCChhhHHhcCCh
Q 035548 155 LFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLL-LGSCIIVETPASLIERGKQ 233 (518)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~-~~~~~~~e~p~~~~~~~~~ 233 (518)
.+..|++++++|+++.++...+..+|..++|.+++.+.. ..|||+.|++.++..++.. +..++.||+++.. .++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~--~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 193 (394)
T PRK11652 119 TLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTT--LFGWRACYLFLLLLGAGVTFSMARWMPETRPAD---ARR 193 (394)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccChHHHHHHHHHHHHHHHHHHHHhCCccCccc---cch
Confidence 899999999999999999999999999999999776543 3589999998877766543 3445567754210 000
Q ss_pred hHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHHH-cC
Q 035548 234 EQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQT-MG 312 (518)
Q Consensus 234 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g 312 (518)
++ .+..+++.++++..+......... .........+.+.++++ +|
T Consensus 194 ~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g 239 (394)
T PRK11652 194 TR------------------------------VLASYRTLLSNRRFNCYLLMLIGT----LAGIAVFEACSGVLMGAVLG 239 (394)
T ss_pred hH------------------------------HHHHHHHHHcChHHHHHHHHHHHH----HHHHHHHHHhChHHHHHHcC
Confidence 00 011122333333332222222111 12233334445556655 79
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHH
Q 035548 313 YGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVF 392 (518)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (518)
++..+.++......++.+++.++.+++.||.+++... ......++.+.+...... .....+.......+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~ 309 (394)
T PRK11652 240 LSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQ--SVICCLLAGLLMWIPGWF--------GVMNVWTLLVPAALF 309 (394)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHh--------ccccHHHHHHHHHHH
Confidence 9988888888888888888999999999988733222 222222222221111100 112223333333444
Q ss_pred HHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhcc
Q 035548 393 VAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKM 446 (518)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 446 (518)
+.+.+. ..|....+..|..| +.++++.++.+....+++.+++.+.+.+.+..
T Consensus 310 ~~g~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~ 361 (394)
T PRK11652 310 FFGAGM-LFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQTG 361 (394)
T ss_pred HHHHHH-HHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 444443 23455566678777 56799999999999999999999988876543
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=230.90 Aligned_cols=321 Identities=14% Similarity=0.064 Sum_probs=213.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHhhhhhhcccchh
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQ-NLGMLIAGRLSLGIGVGFGNQAV 153 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~ 153 (518)
|+|..+.+++.+++.+++.+++++.|+++||+|||+++.++.++..++.+++++++ +++.+++.|+++|++.+ ..+..
T Consensus 33 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~ 111 (366)
T TIGR00886 33 GLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGG-SFASC 111 (366)
T ss_pred CCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhch-hhHhH
Confidence 99999999999999999999999999999999999999999999999999999999 99999999999999866 45667
Q ss_pred hhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhcccc--------CCCcchHHH-HhhhHHHHH-HHHHhhcccCC
Q 035548 154 PLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRI--------HPYGWRISL-GGAAVPALF-LLLGSCIIVET 223 (518)
Q Consensus 154 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~--------~~~~wr~~f-~~~~~~~~~-~~~~~~~~~e~ 223 (518)
..++.|++|+++|+++.++...+.++|..+++.++..+... ...+||+.| +..++...+ ..+...+.+|+
T Consensus 112 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (366)
T TIGR00886 112 MPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADT 191 (366)
T ss_pred HHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccC
Confidence 89999999999999999999977777777776665443321 124899999 443444433 44444556666
Q ss_pred hhhHHhcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHh
Q 035548 224 PASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFY 303 (518)
Q Consensus 224 p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (518)
|+.. ++++ +.. ..+.... .+++......+.++++..+. .... .............+
T Consensus 192 ~~~~----~~~~-~~~-----~~~~~~~----------~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~ 247 (366)
T TIGR00886 192 PPGK----PATG-KLS-----FKGARWS----------VGTGALGDQLKVFRDRHTWI---LALL-YSVTFGSFLGVSSI 247 (366)
T ss_pred Cccc----ccch-hcc-----ccccccc----------ccchhHHHHHHHHhccchhh---HHHH-HHHHHHHHHHHHHH
Confidence 5311 0000 000 0000000 00000002223333333222 2222 22222233455666
Q ss_pred HHHHHH-HcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchh
Q 035548 304 APVLFQ-TMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPA 382 (518)
Q Consensus 304 ~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (518)
.|.+++ .+|++..+++.......+..++++++.+++.||+++|+....+......+..++.+... ++...
T Consensus 248 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~ 318 (366)
T TIGR00886 248 FAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLV---------SPLSL 318 (366)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCC---------CcchH
Confidence 777775 46999999998888999999999999999999999988777666555555444433210 00022
Q ss_pred HHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHH
Q 035548 383 KVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVF 431 (518)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~ 431 (518)
+..+....+.....+... +..+.+..+..| +.+|+++|+.+..+++|
T Consensus 319 ~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 319 AVFIVLFVALFFFSGAGN-GSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred HHHHHHHHHHHHHhcccc-chhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 222233333333333333 344566778877 57799999998887664
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-26 Score=222.30 Aligned_cols=332 Identities=13% Similarity=0.044 Sum_probs=235.2
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHH----HHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhccc
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTI----QAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGN 150 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l----~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 150 (518)
|+|..++|++.+++.++..++++++|+++||+|||+.. ..+..+..+ .++..+++++.+++.|+++|.+.+...
T Consensus 35 g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~ 112 (382)
T TIGR00902 35 GLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGAHNAWLLFIAIGLFALFFSAGM 112 (382)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHccch
Confidence 89999999999999999999999999999999985433 222222222 244567899999999999999999889
Q ss_pred chhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccCChhhHHhc
Q 035548 151 QAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIER 230 (518)
Q Consensus 151 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~ 230 (518)
|...++..++ +++|+++.+....+.++|.+++|++++.+.. .+|||..|++.++..++..+ .+.++|+++. +
T Consensus 113 p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~--~~g~~~~f~~~~~~~~~~~~-~~~~~~~~~~---~ 184 (382)
T TIGR00902 113 PIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIG--MFDEQNILAILTAGLAFMLI-GFLIKPTIPP---K 184 (382)
T ss_pred hHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHH--HcChhHHHHHHHHHHHHHHH-HHHcCCCCCC---C
Confidence 9998888765 4668999999999999999999999777654 35899999877655333333 3333443210 0
Q ss_pred CChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHHH
Q 035548 231 GKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQT 310 (518)
Q Consensus 231 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (518)
++ ++ +++.++..+.++.+|++..+.. ....++. .........+.|.++++
T Consensus 185 ~~-~~-------------------------~~~~~~~~~~~~~l~~~~~~~~---l~~~~l~-~~~~~~~~~~~~~~l~~ 234 (382)
T TIGR00902 185 DA-IP-------------------------EDESQGDSAFIALLKNPMNLRF---LAAVCLI-QGAHAAYYGFSAIYWQA 234 (382)
T ss_pred cc-cc-------------------------ccccccchhHHHHHcChHHHHH---HHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 00 00 0000001123444444333222 2222222 23345556677778888
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHH
Q 035548 311 MGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVC 390 (518)
Q Consensus 311 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (518)
.|.+..+.+.......++.+++.++.+++.||+++|+.+.++.+...+....+... ++.+..+....
T Consensus 235 ~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~-------------~~~~~~~~~q~ 301 (382)
T TIGR00902 235 AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI-------------EAFPLIFLLQI 301 (382)
T ss_pred CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH-------------hhHHHHHHHHH
Confidence 99999999999999999999999999999999999999998888888887766542 23344444555
Q ss_pred HHHHhhhccccccceeeecccCChhhhhhHHHHHHH-HHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHH
Q 035548 391 VFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVS-TNMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLIS 461 (518)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (518)
+.+..++.... ....++.+. |++.|+++.++.+. ...++..+++.+.|.+.|..+...++..+++.+++
T Consensus 302 l~g~~~~~~~~-~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~~~~~~~~~~~~~~ 371 (382)
T TIGR00902 302 LHCGTFAVCHL-AAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGAGTFVFMAIIAAAA 371 (382)
T ss_pred HHHHHHHHHHH-HHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 55555554443 344566777 88899999999874 56789999999999999999876666666655544
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.9e-26 Score=220.92 Aligned_cols=344 Identities=11% Similarity=0.062 Sum_probs=227.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhh-----ccHH-HHHHHHHHHHHHHHHHHhh---ccHHHHHHHHHHhhhh
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKF-----GRKP-TIQAASVFFLIGAILNCLA---QNLGMLIAGRLSLGIG 145 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~-----Grr~-~l~~~~~l~~~~~~~~~~~---~~~~~l~~~r~l~G~~ 145 (518)
|+|.+++|++..+... .+..+++|+++||+ |||| ++..+.++.+++..++++. ++++.+++..++.++.
T Consensus 30 g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~ 107 (402)
T PRK11902 30 GLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFL 107 (402)
T ss_pred CCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 9999999999777775 69999999999999 8865 7888888888888877776 4578888888888999
Q ss_pred hhcccchhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccCChh
Q 035548 146 VGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPA 225 (518)
Q Consensus 146 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~ 225 (518)
.+...++..+++.|++|+++|+++.++...+..+|.++++.++..+... ..|||..|++.++..++..+..++.||+++
T Consensus 108 ~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~-~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~ 186 (402)
T PRK11902 108 SASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADR-VLGWGNTYLLMAGLMLAGALTTLWAPEPEV 186 (402)
T ss_pred HHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhc-ccCHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 9999999999999999999999999999999999999999886655432 148999999988877766555566676543
Q ss_pred hHHhcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHH
Q 035548 226 SLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAP 305 (518)
Q Consensus 226 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (518)
.. ++.++. . ++....++++++++..+..+....+...... .......+
T Consensus 187 ~~---~~~~~~-------------~-------------~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~---~~~~~~~~ 234 (402)
T PRK11902 187 PA---RPPRSL-------------G-------------EAVVGPLRDFFSRRGAWALLLLIVLYKLGDA---FAGSLSTT 234 (402)
T ss_pred cc---cccchh-------------H-------------HHHHHHHHHHHhCcCHHHHHHHHHHHHhHHH---HHHHHHHH
Confidence 10 000000 0 0001224455555554443333333222111 11123344
Q ss_pred HHHHHcCCCChHHHHHHHHHH-HHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHH
Q 035548 306 VLFQTMGYGSNASLLSAVISG-TINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKV 384 (518)
Q Consensus 306 ~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (518)
++.++.|+++.+.++.....+ ++.+++.++.+++.||+++|+.+..+..+..+..+.+..... ...+.+.
T Consensus 235 ~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~---------~~~~~~~ 305 (402)
T PRK11902 235 FLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAV---------TPKHLWT 305 (402)
T ss_pred HHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh---------cCCcHHH
Confidence 555678999988888876554 468899999999999999998877666555544433322211 1122232
Q ss_pred HHHHHHH---HHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHH
Q 035548 385 VVILVCV---FVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLIS 461 (518)
Q Consensus 385 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (518)
......+ ...............++.+.+|.+. .++.+....++..+++.+.|.+.|..|+...+...+++.+.
T Consensus 306 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~ 381 (402)
T PRK11902 306 MALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ----YALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALP 381 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 2222211 1111111222344456677777554 44555556677776777899999999977666555555544
Q ss_pred HHHHH
Q 035548 462 LIFSA 466 (518)
Q Consensus 462 ~~~~~ 466 (518)
+++..
T Consensus 382 ~~~~~ 386 (402)
T PRK11902 382 GLALL 386 (402)
T ss_pred HHHHH
Confidence 44443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-26 Score=222.36 Aligned_cols=349 Identities=11% Similarity=0.054 Sum_probs=228.7
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhcc-HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccch
Q 035548 74 CKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGR-KPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQA 152 (518)
Q Consensus 74 ~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Gr-r~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 152 (518)
+|++..++|++.+++.++..++++++|.++||+|| |+++.++.++.+++..+..+.++++.+++.|++.|++.+...+.
T Consensus 33 ~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 112 (418)
T TIGR00889 33 LHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPTIAL 112 (418)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccHHHH
Confidence 48999999999999999999999999999999965 88889889988888888889999999999999999988777776
Q ss_pred hhhHHHhc--------CCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccCCh
Q 035548 153 VPLFISEI--------APPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETP 224 (518)
Q Consensus 153 ~~~~i~~~--------~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p 224 (518)
..++...+ .....|.+..| .+|.+++|.+++.+.. ...|+ +|++.++..++..+..+++||+|
T Consensus 113 ~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~--~~~~~-~f~~~~~~~~~~~~~~~~~~e~~ 183 (418)
T TIGR00889 113 TNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDI--ELSNI-QLYITAGSSALLGVFALTLPDIP 183 (418)
T ss_pred HHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcc--cchhH-HHHHHHHHHHHHHHHHhcCCCCC
Confidence 66554322 22233445444 3677777777665521 12354 45555665555555566788865
Q ss_pred hhHHhcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhH
Q 035548 225 ASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYA 304 (518)
Q Consensus 225 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (518)
+.. ++.+. +. + +..+.+.++.+|++......+..++.. ........+.
T Consensus 184 ~~~---~~~~~------------~~-----------~--~~~~~~~~~~~k~~~~~~~~~~~~~~~----~~~~~~~~~~ 231 (418)
T TIGR00889 184 VAK---STAKM------------SI-----------K--VMLGLDAFILFKNKRMAIFFFFSMLLG----APLQITNIFG 231 (418)
T ss_pred CCc---ccccc------------CH-----------H--HHhhhhHHHHhcCCCeeeHHHHHHHHH----hHHHHHHHhH
Confidence 310 00000 00 0 000111223444443333233222221 1222334555
Q ss_pred HHHHHHcCCCC--------hHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCC
Q 035548 305 PVLFQTMGYGS--------NASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNT 376 (518)
Q Consensus 305 ~~~~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (518)
+.++++.|.++ ...+.......+..+++.++.+++.||+|+|+.+..+.++..+...++....
T Consensus 232 ~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~--------- 302 (418)
T TIGR00889 232 NGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGD--------- 302 (418)
T ss_pred HHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcC---------
Confidence 66666666543 5568888888999999999999999999999999988887777665554410
Q ss_pred CCCc-hhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHH-HHHHHHHHHHHHHhHHHHhccc------h
Q 035548 377 MPTV-PAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAV-STNMVFTFVIAQAFLSMLCKMR------W 448 (518)
Q Consensus 377 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~------~ 448 (518)
+.. ..+..++..++.+.+.+.. .+....++.|.+|++.|++++|+.+ ....++..++|.+.|.+.+..+ +
T Consensus 303 -~~~~~~~~l~l~~~l~g~~~~~~-~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~ 380 (418)
T TIGR00889 303 -PEYFGYALLFLSMIVYGCAFDFF-NISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDW 380 (418)
T ss_pred -cchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCch
Confidence 011 1122233333344333322 2344466799999999999999997 5678899999999999999854 3
Q ss_pred h-hHHHHHHHHHHHHHHHHhcccCCCC
Q 035548 449 G-IFFFFTGWLLISLIFSATMLPETKG 474 (518)
Q Consensus 449 ~-~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (518)
. .+...+++.++.+++.+++.+|+++
T Consensus 381 ~~~f~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 381 QTMWLFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 3 4445555666666666677766543
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-25 Score=214.80 Aligned_cols=330 Identities=11% Similarity=0.030 Sum_probs=224.2
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccH----HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhccc
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRK----PTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGN 150 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr----~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 150 (518)
|.|..++|++.+++.++..++++++|+++||+||| +.+.++..+. .......+++++.+++.|++.|++.+...
T Consensus 35 g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~l~g~~~~~~~ 112 (382)
T PRK11128 35 GYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAIGLFNLFFSPLV 112 (382)
T ss_pred CCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHHHHHHHHHcccc
Confidence 89999999999999999999999999999999994 3333222222 22334446889999999999999999999
Q ss_pred chhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccCChhhHHhc
Q 035548 151 QAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIER 230 (518)
Q Consensus 151 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~ 230 (518)
+...+++.++ +++|+++.+......++|..+||++++.+.. .+|||..|++.++..++..+...+.||.++.
T Consensus 113 ~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~--~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~---- 184 (382)
T PRK11128 113 PLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVS--WFGEQAILWILTAGVASMLLGQLLRPTIMPQ---- 184 (382)
T ss_pred cHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHH--HcChhHHHHHHHHHHHHHHHHHHccCCCCCc----
Confidence 9888888876 3457888888999999999999999877654 3589999988776555444444444443210
Q ss_pred CChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHHH
Q 035548 231 GKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQT 310 (518)
Q Consensus 231 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (518)
++.++ +.++...+++++++++..+......++.. ........+.+.+.++
T Consensus 185 ~~~~~--------------------------~~~~~~~~~~~i~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~ 234 (382)
T PRK11128 185 GESRQ--------------------------QESAGWPAWKALLKEPTVWRFLLCVSLLQ----GSHAAYYGFSAIYWQA 234 (382)
T ss_pred ccccc--------------------------ccccccchHHHHHcChhHHHHHHHHHHHH----HHhHhHHHHHHHHHHH
Confidence 00000 00001223455555544333333222222 2233444556667778
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHH
Q 035548 311 MGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVC 390 (518)
Q Consensus 311 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (518)
.|++..+.+.......++.++..++.+++.||+++|+.+..+.....+..+.+.. .++.+..+...+
T Consensus 235 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~ 301 (382)
T PRK11128 235 AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGS-------------TTALPWLIVIQI 301 (382)
T ss_pred CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHh-------------hhhHHHHHHHHH
Confidence 8999888999999888999999999999999999999988887776666554433 123344444444
Q ss_pred HHHHhhhccccccceeeecccCChhhhhhHHHHHHHH-HHHHHHHHHHHhHHHHhccchhhHHHHHHHHH
Q 035548 391 VFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVST-NMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLL 459 (518)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (518)
+.+.++.... +....+..+. +++.+++..++.+.. ..++..++|.+.|.+.|..+...++..+.+.+
T Consensus 302 l~g~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~~~~~~~~~~~ 369 (382)
T PRK11128 302 LHCGTFTVCH-LAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAGVFWVMALVAL 369 (382)
T ss_pred HHHHHHHHHH-HHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4444444332 3333555665 455568888887644 45677899999999999988755544444433
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-27 Score=230.52 Aligned_cols=409 Identities=16% Similarity=0.165 Sum_probs=280.7
Q ss_pred CCcchHHHHHHHHHHHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHHHHHHH
Q 035548 16 PAKLTGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVA 95 (518)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~ 95 (518)
+..+-|......++..+ +.+|...+.- ...+.+.++| +.+..+++|+.++....+.+.
T Consensus 40 dGG~gWvV~~a~fl~~~--~~~g~~~~~G---v~~~~~~~~f-----------------~~s~~~~~~i~sl~~~~~~~~ 97 (509)
T KOG2504|consen 40 DGGWGWVVVFASFLVNL--STDGLINSFG---LLFEELMDYF-----------------GSSSSQIAWIGSLLLGVYLLA 97 (509)
T ss_pred CCCeeeeeeHhHHHHHH--hhhcchheeh---hhHHHHHHHh-----------------CCCccHHHHHHHHHHHHHHHh
Confidence 44555655555544444 3344433322 2335666666 778888999999999999999
Q ss_pred HHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHH-HHHhhhhhhcccchhhhHHHhcCCCCcchhHHhHHH
Q 035548 96 CFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAG-RLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQ 174 (518)
Q Consensus 96 ~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~-r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~ 174 (518)
+|+.+.+.||+|.|++.+.|.++..++.++.++++++|++++. -++.|+|.|+.+......+..||++| |+.+.|+..
T Consensus 98 gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kk-R~lA~Gia~ 176 (509)
T KOG2504|consen 98 GPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKK-RALATGIAV 176 (509)
T ss_pred ccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHH-HHHHHhhhh
Confidence 9999999999999999999999999999999999999988887 78999999999999999999888765 999999999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccC-ChhhHHhcCChhHHHHHHHhhhC--------
Q 035548 175 LLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVE-TPASLIERGKQEQGLYTLRKIRG-------- 245 (518)
Q Consensus 175 ~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e-~p~~~~~~~~~~~a~~~~~~~~~-------- 245 (518)
.+.++|..+-|.+.-.+. +..|||+.+++.+.+.+-.++....+.+ +++.... .++..+..+....
T Consensus 177 ~GsG~G~~~~~~l~~~l~--~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 251 (509)
T KOG2504|consen 177 SGTGVGTVVFPPLLKYLL--SKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPN---EEKDLRNSAASVESTPKPVEL 251 (509)
T ss_pred ccCCcceeeHHHHHHHHH--HHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch---hhhhhcccccccccccccccc
Confidence 999999998888855553 3469999999888887766555554433 2211000 0000000000000
Q ss_pred ------CccHH---HHHHHHHHHHHhhc--ccccch----hhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHHH
Q 035548 246 ------VKDVE---KEYAEICRATEISN--LIKHPY----RSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQT 310 (518)
Q Consensus 246 ------~~~~~---~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (518)
..... .+....++..++.+ ..+... .++++. +.++...+.......++.....++|.+.+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~----~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~ 327 (509)
T KOG2504|consen 252 RISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKD----PKFLLLALSNLFAYLGFNVPFVYLPSYAKS 327 (509)
T ss_pred ccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcC----chHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 00000 00000000000000 001111 233333 445555666666666778888899999999
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCC--hHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHH
Q 035548 311 MGYGSNASLLSAVISGTINVASTLVAIVLVDKAGR--KILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVIL 388 (518)
Q Consensus 311 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (518)
.|++..+++.+..+.++..++++++.|++.|+... +....++.++.++..+.+.+. ...+.....
T Consensus 328 ~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~-------------~~~~~l~~~ 394 (509)
T KOG2504|consen 328 LGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFA-------------TTYVGLIVF 394 (509)
T ss_pred cCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHh-------------ccHHHHHHH
Confidence 99999999999999999999999999999999874 444445555555555333331 222333333
Q ss_pred HHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccc-hhhHHHHHHHHHHHHHHHHh
Q 035548 389 VCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMR-WGIFFFFTGWLLISLIFSAT 467 (518)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 467 (518)
..+++...+ .+.......+.|+.+.+.-..++|+...+..++..++|++.|.+.|.++ |...+.+.+++.+.+..+++
T Consensus 395 ~~~fG~~~g-~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~ 473 (509)
T KOG2504|consen 395 SILFGFCVG-SFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLL 473 (509)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHH
Confidence 333333333 2333444567899999999999999999999999999999999999988 76667777777776666666
Q ss_pred ccc
Q 035548 468 MLP 470 (518)
Q Consensus 468 ~~~ 470 (518)
..+
T Consensus 474 ~~~ 476 (509)
T KOG2504|consen 474 ILR 476 (509)
T ss_pred HhH
Confidence 655
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-25 Score=219.52 Aligned_cols=350 Identities=15% Similarity=0.037 Sum_probs=211.9
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHH---hhc-----cHHHHHHHHHHhhhh
Q 035548 74 CKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNC---LAQ-----NLGMLIAGRLSLGIG 145 (518)
Q Consensus 74 ~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~---~~~-----~~~~l~~~r~l~G~~ 145 (518)
+|++..+.|++.+++.++..++++++|+++||+|||+++.++..+..++..... .++ .+....+++++.|.+
T Consensus 41 ~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (420)
T PRK09528 41 NGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFG 120 (420)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 489999999999999999999999999999999999999887666554433211 111 111123334444443
Q ss_pred hhcccchhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccCChh
Q 035548 146 VGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPA 225 (518)
Q Consensus 146 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~ 225 (518)
.....+....+..+ . .+++++.++......++|..++|.+++.+.. .+|+..|++.+++.++..+..++.+++++
T Consensus 121 ~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 195 (420)
T PRK09528 121 FLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFN---INPQINFWLGSGSALILLVLLFFAKPDAP 195 (420)
T ss_pred hccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHh---cCchHhHHHHHHHHHHHHHHHhccccccc
Confidence 33333333343322 2 2346778888888899999999999877654 37999999988887776666655443331
Q ss_pred hHHhcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHH
Q 035548 226 SLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAP 305 (518)
Q Consensus 226 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (518)
....+.+.++ .++++.......+.++++..+...+....... .+.....+.|
T Consensus 196 ~~~~~~~~~~------------------------~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~----~~~~~~~~~~ 247 (420)
T PRK09528 196 STAKVANALG------------------------ANASAVSLKDALALLKLPKFWFLVLYVIGVAC----FYDVFDQQFP 247 (420)
T ss_pred chhhhccchh------------------------cccccccHHHHHHHccCCCeEeehHHHHHHHH----HHHHHHHHHH
Confidence 1000000000 00000001112233343333322222211111 1122222333
Q ss_pred HHHH----HcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCch
Q 035548 306 VLFQ----TMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVP 381 (518)
Q Consensus 306 ~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (518)
.++. +.+.+..+.+.......++.+++.++.+++.||+++|+.+..+.++..+..+++.+. .+
T Consensus 248 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~-------------~~ 314 (420)
T PRK09528 248 NFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA-------------TG 314 (420)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc-------------cc
Confidence 3332 235666677888888889999999999999999999999887777766666555431 12
Q ss_pred hHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHH-HHHHHHHHHHHHHHHhHHHHhccchhhHHH-HHHHHH
Q 035548 382 AKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFF-AVSTNMVFTFVIAQAFLSMLCKMRWGIFFF-FTGWLL 459 (518)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 459 (518)
.+..+....+.+...... .+....+..|.+|++.+++..+. .+....++.++++.+.|.+.|..|+...+. .+++.+
T Consensus 315 ~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~ 393 (420)
T PRK09528 315 PLEVSILKLLHAFEVPFL-LVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVL 393 (420)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHH
Confidence 233333333333332222 12333566788899998888765 567788999999999999999888654444 444444
Q ss_pred HHHHHHHhccc
Q 035548 460 ISLIFSATMLP 470 (518)
Q Consensus 460 ~~~~~~~~~~~ 470 (518)
+..++.....+
T Consensus 394 i~~~~~~~~~~ 404 (420)
T PRK09528 394 LFTLISVFTLS 404 (420)
T ss_pred HHHHHHHHHhc
Confidence 44444444433
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-25 Score=217.79 Aligned_cols=345 Identities=13% Similarity=0.095 Sum_probs=245.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhh-----ccHHHHHHHHHHhhhhhhcc
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLA-----QNLGMLIAGRLSLGIGVGFG 149 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~g~~ 149 (518)
.-|+..++++..+..+...+.+++.|.++||+.|||+++.+.++..+..++.++. .+.+.+++.-++.|++.+..
T Consensus 41 t~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~ 120 (524)
T PF05977_consen 41 TGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFF 120 (524)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHH
Confidence 3478899999999999999999999999999999999999998877665544432 47889999999999999999
Q ss_pred cchhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccCChhhHHh
Q 035548 150 NQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIE 229 (518)
Q Consensus 150 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~ 229 (518)
.|+..+++.|..|+++...+.++.+...++..++||.+++.+... .|-.+.|++.++..++.+.....+++.++. +
T Consensus 121 ~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~--~G~~~~f~inalsfl~~i~~l~~~~~~~~~--~ 196 (524)
T PF05977_consen 121 NPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAF--FGAAAAFLINALSFLISILALLRWKPPPPP--S 196 (524)
T ss_pred HHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHccccccc--c
Confidence 999999999999999999999999999999999999998876543 366788888877665544444444322110 0
Q ss_pred cCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHH
Q 035548 230 RGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQ 309 (518)
Q Consensus 230 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (518)
+.+.|. . .+.-+..++-..+.+..+..++...+..+ ....+...+|.+.+
T Consensus 197 ~~~~e~---~-----------------------~~~l~~G~ryv~~~~~l~~~l~~~~~~~l----~~~a~~aLlPl~a~ 246 (524)
T PF05977_consen 197 SLPRER---F-----------------------FSALREGLRYVRSSPPLRSVLLRSFLFNL----FASAVWALLPLFAR 246 (524)
T ss_pred ccchhh---h-----------------------hhhHHHHHHHHhcchHHHHHHHHHHHHHH----hhhHHHHhhhHHHH
Confidence 000000 0 00001112222222222222222222111 12233445677765
Q ss_pred -HcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHH
Q 035548 310 -TMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVIL 388 (518)
Q Consensus 310 -~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (518)
.+|.++...|++.+..+++.++|+++.+++.+|+++++.+..+.+..+++.+.+++. .+.+.....
T Consensus 247 ~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~-------------~~~~~~~~~ 313 (524)
T PF05977_consen 247 DVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS-------------PSFWLALIA 313 (524)
T ss_pred HHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc-------------hHHHHHHHH
Confidence 568899999999999999999999999999999999988888877777766666552 333444444
Q ss_pred HHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHHHHHHHh
Q 035548 389 VCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLISLIFSAT 467 (518)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (518)
.++.+.+.... .....+...+..|++.||+++++.++....+..+|..+.|.+.+..+....+..++++++...++..
T Consensus 314 l~l~G~~~~~~-~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 314 LFLAGAAWIIA-NSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 44444443332 2344566789999999999999999999999999999999999999865555555544444444333
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-26 Score=213.79 Aligned_cols=350 Identities=10% Similarity=0.041 Sum_probs=221.0
Q ss_pred ccCCChhH-HHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccc
Q 035548 73 YCKYDNQY-LQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQ 151 (518)
Q Consensus 73 ~~~~s~~~-~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 151 (518)
|+|+|+++ .|.+.++++.+|++++++.|+++||+|.|+++.++.+.+++..++.++++++..+.+.|++.|+++|+..
T Consensus 55 elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~- 133 (511)
T TIGR00806 55 VLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI- 133 (511)
T ss_pred HcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHH---hhhHHHHHHHHHhhcccCChhhHH
Q 035548 152 AVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLG---GAAVPALFLLLGSCIIVETPASLI 228 (518)
Q Consensus 152 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~---~~~~~~~~~~~~~~~~~e~p~~~~ 228 (518)
+...++..|+|+++|+++.++..++..+|.+++++++..+. .+|||+.+. +......+.+++.+++|..++.+.
T Consensus 134 A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~---s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~ 210 (511)
T TIGR00806 134 AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV---TLGWISYSTLNIISLVFMTFSVFLALFLKRPKRSLF 210 (511)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCchhHHHHHHHHHHHHHHHHHHHHhCCCCchhhh
Confidence 99999999999999999999999999999999999987732 368997664 333444456667778886665443
Q ss_pred hcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHH
Q 035548 229 ERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLF 308 (518)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (518)
-+++.+.......+.....+.+........+......-..-+.++ +.....+.++...+.+....+++..+..|...+.
T Consensus 211 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~y~n~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW 289 (511)
T TIGR00806 211 FNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSEL-VTIYRNPQLLLWSLWWVFNSAGYYLITYYVHTLW 289 (511)
T ss_pred hccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHH-HHHhcCcchhhhhHHHHHHhhHHHHHHHHHHHHH
Confidence 332211100000000000000000000000000000000001111 1112222233344444555566777777877777
Q ss_pred HHcCC-CChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHH
Q 035548 309 QTMGY-GSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVI 387 (518)
Q Consensus 309 ~~~g~-~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (518)
++..- .+...|..-.+..+.+.+.++..|++-.+..+...+.++.+...-+.+++.. . ...+.|...+
T Consensus 290 ~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m-~----------~t~~Iw~~Y~ 358 (511)
T TIGR00806 290 GTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWM-S----------QSHDIWVLYV 358 (511)
T ss_pred HHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhh-h----------cccchHHHHH
Confidence 66532 2224566677777888888899999855443322333332222222222211 1 2455666666
Q ss_pred HHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHh
Q 035548 388 LVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAF 439 (518)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~ 439 (518)
...++...+..... +...-+++....+.-|..+|+.+++.-+-..+...+.
T Consensus 359 ~yvlf~~~y~flit-ia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~iV 409 (511)
T TIGR00806 359 TYVLFRGIYQFLVP-IATFQIASSLSKELCALVFGINTFVATALKTIITAVV 409 (511)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEEE
Confidence 66666666665433 3333344445555557778877776666655544443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-25 Score=199.76 Aligned_cols=363 Identities=10% Similarity=0.057 Sum_probs=262.3
Q ss_pred HHHHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhc
Q 035548 28 IIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFG 107 (518)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~G 107 (518)
..+....+++|+.......++ |++++.| +++..+.+++..+++.|+.+++++.|++.+|+|
T Consensus 16 v~~t~lFfl~G~~~~l~diLi--p~l~~~f-----------------~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~g 76 (422)
T COG0738 16 VLLTSLFFLWGFITCLNDILI--PHLKEVF-----------------DLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLG 76 (422)
T ss_pred HHHHHHHHHHHHHhhcchhhH--HHHHHHh-----------------CccHHHHHHHHHHHHHHHHHHhccHHHHHHHhh
Confidence 333444577888887777555 8888888 999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHH---hhccHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHH
Q 035548 108 RKPTIQAASVFFLIGAILNC---LAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAA 184 (518)
Q Consensus 108 rr~~l~~~~~l~~~~~~~~~---~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~ 184 (518)
+|+.+++|+.++++++.+.. ...++..++++-++.|.|.+...+.++.++....++++..+.+++.+..+++|.+++
T Consensus 77 yk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~g 156 (422)
T COG0738 77 YKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILG 156 (422)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHH
Confidence 99999999999999999884 567899999999999999999999999999999999888999999999999999999
Q ss_pred HHHHhhccccC-----------------CCcchHHHHhhhHHHHHHHHHhhc--ccCChhhHHhcCChhHHHHHHHhhhC
Q 035548 185 NLINYGTSRIH-----------------PYGWRISLGGAAVPALFLLLGSCI--IVETPASLIERGKQEQGLYTLRKIRG 245 (518)
Q Consensus 185 ~~i~~~~~~~~-----------------~~~wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~a~~~~~~~~~ 245 (518)
|+++..+.... ...||.+|...+...+++.+.... .|+.+..
T Consensus 157 p~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~------------------- 217 (422)
T COG0738 157 PLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVA------------------- 217 (422)
T ss_pred HHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcc-------------------
Confidence 99987665410 124888887777766665554443 3332210
Q ss_pred CccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHHH-cCCCChHHHHHHHH
Q 035548 246 VKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQT-MGYGSNASLLSAVI 324 (518)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~ 324 (518)
..+..+.++....+.++++..+.-.+..+++.. .-.....|.+.++.+ .|.+..++....+.
T Consensus 218 -------------~~~~~~~~~~~~~~l~~~~~~~~gvl~~FlYVG----~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~ 280 (422)
T COG0738 218 -------------APSLGASGSAGLSSLFQNKHLRLGVLAIFLYVG----AEVAIGSFLVSYLEELLGLNEQQAAYYLSF 280 (422)
T ss_pred -------------cccccccccchHHHHHhChHHHHHHHHHHHHHh----HHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 000001111134555555554444444444433 334556677777766 79999999999999
Q ss_pred HHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccc
Q 035548 325 SGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPIC 404 (518)
Q Consensus 325 ~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (518)
...+.++|++++.++..|+...+.+....++..+.++...+. +. ...+....+.+.+.+. ..|..
T Consensus 281 ~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~-----------~g---~v~~~~l~~ig~F~si-mfPTI 345 (422)
T COG0738 281 FWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALI-----------GG---VVALYALFLIGLFNSI-MFPTI 345 (422)
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh-----------cC---hHHHHHHHHHHHHhHH-HHHHH
Confidence 999999999999999999999888877665555555544442 11 2333333333343333 34666
Q ss_pred eeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchhhH-HHHHHHHHHHH
Q 035548 405 WLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWGIF-FFFTGWLLISL 462 (518)
Q Consensus 405 ~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 462 (518)
++...+..|.+. ...|..-.....|+++.|++.|++.|..+.... ......|.+..
T Consensus 346 fslal~~l~~~t--s~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 346 FSLALKNLGEHT--SVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred HHHHHhccCccc--cccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 777788888333 333444566678999999999999999885433 32444444433
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.5e-25 Score=242.31 Aligned_cols=326 Identities=13% Similarity=-0.011 Sum_probs=222.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHH---HhhccHHHHHHHHHHhhhhhhcccchh
Q 035548 77 DNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILN---CLAQNLGMLIAGRLSLGIGVGFGNQAV 153 (518)
Q Consensus 77 s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~ 153 (518)
+....+++.+++.+++.++++++|+++||+|||++++++.++.+++.+++ ..+++++.++++|+++|++.+...++.
T Consensus 45 ~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 124 (1146)
T PRK08633 45 QVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAK 124 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHH
Confidence 44567999999999999999999999999999999999887766655544 345789999999999999999999999
Q ss_pred hhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccC-------CCcchHHHHhhhH-HHHHHHHHhhcccCChh
Q 035548 154 PLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIH-------PYGWRISLGGAAV-PALFLLLGSCIIVETPA 225 (518)
Q Consensus 154 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~-------~~~wr~~f~~~~~-~~~~~~~~~~~~~e~p~ 225 (518)
.+++.|++|+++|++++++...+..+|.++|+++++.+.... ..+|++.+.+..+ ..++.+++.+.+||+|+
T Consensus 125 ~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (1146)
T PRK08633 125 YGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPA 204 (1146)
T ss_pred HhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCC
Confidence 999999999999999999999999999999999988765430 1234444444333 33344455566777664
Q ss_pred hHHhcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHH
Q 035548 226 SLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAP 305 (518)
Q Consensus 226 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (518)
....+.+.++ ... . ......++.+++.+..+..++...+. .........+.|
T Consensus 205 ~~~~~~~~~~----------~~~----~----------~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 256 (1146)
T PRK08633 205 AAPEVFDKKK----------YLF----P----------KLLWRNLKLLRSDRVLWLAIIGLSYF----WFISQLAQANFP 256 (1146)
T ss_pred CCcccccccc----------ccc----H----------HHHHHHHHHHhcCcHHHHHHHHHHHH----HHHHHHHHHhhH
Confidence 3111100000 000 0 00011233333333322222222221 122233444555
Q ss_pred HHH-HHcCCCCh-HHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhH
Q 035548 306 VLF-QTMGYGSN-ASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAK 383 (518)
Q Consensus 306 ~~~-~~~g~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (518)
.++ +.+|++.. ..+++.....++.+++.++.+++.||+++++.+.++.++.+++.+++... .+.+
T Consensus 257 ~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~ 323 (1146)
T PRK08633 257 AYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA-------------PSLA 323 (1146)
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh-------------hhHH
Confidence 555 56799888 88999999999999999999999999999888777766666655555432 1223
Q ss_pred HHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHh
Q 035548 384 VVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLC 444 (518)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 444 (518)
..++..++++.+.+... +...+++.+..|++.||+++|+.+.+..++..+++.+.+.+..
T Consensus 324 ~~~~~~~~~g~~~~~~~-~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~ 383 (1146)
T PRK08633 324 SVLVLFFLFGFSAGLFI-VPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG 383 (1146)
T ss_pred HHHHHHHHHHHHHHHhh-HHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444433332 3345677899999999999999999999988877776665543
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-25 Score=213.01 Aligned_cols=320 Identities=12% Similarity=0.069 Sum_probs=213.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhh-----ccHHH-HHHHHHHHHHHHHHHHhh---ccHHHHHHHHHHhhhh
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKF-----GRKPT-IQAASVFFLIGAILNCLA---QNLGMLIAGRLSLGIG 145 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~-----Grr~~-l~~~~~l~~~~~~~~~~~---~~~~~l~~~r~l~G~~ 145 (518)
|+|.+++|++... .+...+ .+++|+++||+ ||||. ++.+.++.+++..+.++. .+.+.+....++.+++
T Consensus 19 g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~ 96 (356)
T TIGR00901 19 NVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFF 96 (356)
T ss_pred CCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHH
Confidence 9999999999755 555555 99999999998 89886 567777777777777776 4667778888899999
Q ss_pred hhcccchhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCC------CcchHHHHhhhHHHHHHHHHhhc
Q 035548 146 VGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHP------YGWRISLGGAAVPALFLLLGSCI 219 (518)
Q Consensus 146 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~------~~wr~~f~~~~~~~~~~~~~~~~ 219 (518)
.+...++..+++.|++|+|+|+++.++...+..+|.++++.++..+..... ++||..|++.++..++..+..++
T Consensus 97 ~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~ 176 (356)
T TIGR00901 97 SATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLF 176 (356)
T ss_pred HHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999765543221 23999999998877776555444
Q ss_pred -ccCChhhHHhcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchh
Q 035548 220 -IVETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGIN 298 (518)
Q Consensus 220 -~~e~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (518)
.+|+++. .+.++ ++ . ++.+..++++++++..++.+.......+. .....
T Consensus 177 ~~~e~~~~----~~~~~---------------~~-----~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 226 (356)
T TIGR00901 177 LAKEPQED----ASVPK---------------PL-----T-----QAVLKPIREFFQRKNMIQALLLLLLIVLY-KLGDS 226 (356)
T ss_pred hccCCCcc----cccch---------------hH-----H-----HHHHHHHHHHHHhcCchHHHHHHHHHHHH-HHHHH
Confidence 4553210 00000 00 0 00011233444444323333333333222 23344
Q ss_pred HHHHhHHHHHHHcCCCChHHHHHHHHHH-HHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCC
Q 035548 299 VVMFYAPVLFQTMGYGSNASLLSAVISG-TINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTM 377 (518)
Q Consensus 299 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (518)
....+.|.++++.|++..+.+......+ +..+++.++++++.||+|+|+.+..+.++..+....+.+..... ...+ .
T Consensus 227 ~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~-~ 304 (356)
T TIGR00901 227 AATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNG-HHDG-I 304 (356)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcC-cccc-c
Confidence 5566777777778999999888777666 57789999999999999999988877776666555443321100 0000 0
Q ss_pred CCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHH
Q 035548 378 PTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNM 429 (518)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~ 429 (518)
+....+.......+...+.+. ..+...++..|.+|++.||+.+|+.+...+
T Consensus 305 ~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 305 TFPHLLMLFLTITLEAVTGGL-GTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred ccchHHHHHHHHHHHHHHhHH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 001223233333333333332 234556788999999999999999877654
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=211.38 Aligned_cols=343 Identities=14% Similarity=0.079 Sum_probs=219.1
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHH---Hhh-----ccHHHHHHHHHHhhhh
Q 035548 74 CKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILN---CLA-----QNLGMLIAGRLSLGIG 145 (518)
Q Consensus 74 ~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~---~~~-----~~~~~l~~~r~l~G~~ 145 (518)
+|.+..+.|++.+++.++..+++++.|+++||+|||+.++.+....+++.... .+. +.+..+.+.|++.|++
T Consensus 33 ~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 112 (396)
T TIGR00882 33 NGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFV 112 (396)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999999999999999999999999999988777665544322 112 1234456778999999
Q ss_pred hhcccchhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcc-cCCh
Q 035548 146 VGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCII-VETP 224 (518)
Q Consensus 146 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e~p 224 (518)
.+...+....+..|..+ ++++..+......++|..++|.+++.+.. .+||.+|++.+++.++..+..+.. +|+|
T Consensus 113 ~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 187 (396)
T TIGR00882 113 FSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFS---IDPQIVFWLGSGFALILMLLLMFAKPKAP 187 (396)
T ss_pred hccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhc---cCchHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 98888888888777533 34566777778889999999999776543 489999999888877765555443 3333
Q ss_pred hhHHhcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhH
Q 035548 225 ASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYA 304 (518)
Q Consensus 225 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (518)
+.. +.+++. +.++++++..+..+.++++..+...+ ..... ...+.....+.
T Consensus 188 ~~~----~~~~~~---------------------~~~~~~~~~~~~~~~l~~~~~~~~~l---~~~~~-~~~~~~~~~~~ 238 (396)
T TIGR00882 188 SSA----TVANAL---------------------GANASAFSLKLALELFRQRKFWMFVL---YVVGV-ACVYDVFDQQF 238 (396)
T ss_pred hhh----hhhccc---------------------ccccCCCCHHHHHHHHcCCcHHHHHH---HHHHH-HHHHHHHHHHH
Confidence 210 000000 00000011122344554443322222 11111 12223333344
Q ss_pred HHHHHHc----CCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCc
Q 035548 305 PVLFQTM----GYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTV 380 (518)
Q Consensus 305 ~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (518)
+.++++. +.+....+.......+...++.+..+++.||+++|+.+.++..+.++...+... ..
T Consensus 239 ~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~-------------~~ 305 (396)
T TIGR00882 239 ANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSF-------------AT 305 (396)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh-------------cC
Confidence 5555432 445566788888888888999999999999999999988877766665554332 12
Q ss_pred hhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHH-HHHHHHHHHHHHHHHhHHHHhccchh-hHHHHHHHH
Q 035548 381 PAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFF-AVSTNMVFTFVIAQAFLSMLCKMRWG-IFFFFTGWL 458 (518)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 458 (518)
+.+..+....+.+.+..... .....+..+..+++.++++.+. .+....++.++++.+.|.+.|..|+. .+.+.+.+.
T Consensus 306 ~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~ 384 (396)
T TIGR00882 306 TALEVVILKMLHAFEVPFLL-VGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIV 384 (396)
T ss_pred ChHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHH
Confidence 23333333333333322211 1223345677788888877766 56788999999999999999988865 444444444
Q ss_pred HHHHHH
Q 035548 459 LISLIF 464 (518)
Q Consensus 459 ~~~~~~ 464 (518)
++.+++
T Consensus 385 ~i~~~~ 390 (396)
T TIGR00882 385 LLFTLI 390 (396)
T ss_pred HHHHHH
Confidence 444443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-25 Score=219.58 Aligned_cols=330 Identities=14% Similarity=0.131 Sum_probs=220.2
Q ss_pred cccCCChhHHHHHHHHHHHHHHHHHHhhHHhhhh----hcc-HHHHHHHHHHHHHHHHHHHhhcc------HHHHHHHHH
Q 035548 72 NYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRK----FGR-KPTIQAASVFFLIGAILNCLAQN------LGMLIAGRL 140 (518)
Q Consensus 72 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr----~Gr-r~~l~~~~~l~~~~~~~~~~~~~------~~~l~~~r~ 140 (518)
+++|++..++|++.++..+..++.+|+.|+++|| +|| |+.++.+..+.+++.+++.+.++ ...+++.++
T Consensus 28 ~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (437)
T TIGR00792 28 DVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYI 107 (437)
T ss_pred HccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHH
Confidence 3459999999999999999999999999999998 677 45677888888888888877654 456777889
Q ss_pred HhhhhhhcccchhhhHHHhcC-CCCcchhHHhHHHHHHHHHHHHHHHHHhhccc-----cCCCcchHHHHhhhHHHHHHH
Q 035548 141 SLGIGVGFGNQAVPLFISEIA-PPKYRGGLNICFQLLITVGILAANLINYGTSR-----IHPYGWRISLGGAAVPALFLL 214 (518)
Q Consensus 141 l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~-----~~~~~wr~~f~~~~~~~~~~~ 214 (518)
+.+++.+...+...++..|.. ++++|++..++.+.+..+|.++++.+...+.. .+..+||+.+++.++++++..
T Consensus 108 ~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~ 187 (437)
T TIGR00792 108 LLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSL 187 (437)
T ss_pred HHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHH
Confidence 999999988888888999987 46889999999998888887776655433221 123689999999888877755
Q ss_pred HH-hhcccCChhhHHhcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHH
Q 035548 215 LG-SCIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQ 293 (518)
Q Consensus 215 ~~-~~~~~e~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (518)
+. .++.+|+++.. +.++ +++.+.+..++++++++..+. .....++ .
T Consensus 188 ~~~~~~~~e~~~~~----~~~~-------------------------~~~~~~~~~~~~l~~~~~~~~---~~~~~~~-~ 234 (437)
T TIGR00792 188 IICFFGTKERYSEI----PKNI-------------------------EKKLSLKQIFKALFKNDQLLI---LCLAYLF-Y 234 (437)
T ss_pred HHHHcCCEecCCCC----Cccc-------------------------ccCCCHHHHHHHHhCCHHHHH---HHHHHHH-H
Confidence 44 45566644100 0000 000000112233333332222 2222222 2
Q ss_pred hhchhHHHHhHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcc
Q 035548 294 LTGINVVMFYAPVLFQTM-GYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLL 372 (518)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (518)
.........+.+++.+.. + +....+.......++.+++.++.+++.||+|+|+.+..+..+..++.+.+.+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~------ 307 (437)
T TIGR00792 235 NLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFA------ 307 (437)
T ss_pred HHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc------
Confidence 222333333444444432 4 44556677777789999999999999999999999888877666665554331
Q ss_pred cCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCC-------hhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhc
Q 035548 373 TTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYP-------LETRNAGYFFAVSTNMVFTFVIAQAFLSMLCK 445 (518)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 445 (518)
..+.+.......+.+.+.+.. .+..+++.+|..+ ++.+|.+.|+.+....++..+++.+.|.+.+.
T Consensus 308 ------~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~ 380 (437)
T TIGR00792 308 ------GSNLPLILVLIILAGFGQNFV-TGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGI 380 (437)
T ss_pred ------chhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122233333333333333322 2344566666654 45679999999999999999999999999987
Q ss_pred cch
Q 035548 446 MRW 448 (518)
Q Consensus 446 ~~~ 448 (518)
.|+
T Consensus 381 ~G~ 383 (437)
T TIGR00792 381 IGY 383 (437)
T ss_pred cCC
Confidence 654
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-23 Score=187.16 Aligned_cols=321 Identities=17% Similarity=0.108 Sum_probs=244.4
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccch
Q 035548 73 YCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQA 152 (518)
Q Consensus 73 ~~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 152 (518)
++|+|.+..|+++++..+...+.+++..+++.|+|.++.+..++++..++.++-... +.+.++.+-.+.|.|.+.....
T Consensus 41 ~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVL 119 (395)
T COG2807 41 DLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAVINVL 119 (395)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHh
Confidence 349999999999999999999999999999999999999999999999999999887 8888999999999999999999
Q ss_pred hhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccCChhhHHhcCC
Q 035548 153 VPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGK 232 (518)
Q Consensus 153 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~ 232 (518)
.++++.+.||++ -+..++++....++|..+++.++..+.... .|||....+-+.++++.++.++.-...++
T Consensus 120 LPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~-~gW~~aL~~WAl~allAl~~WlPq~~r~~------- 190 (395)
T COG2807 120 LPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHS-GGWRGALGFWALLALLALLIWLPQALREQ------- 190 (395)
T ss_pred hhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhh-ccHHHHHHHHHHHHHHHHHHHhhhccccc-------
Confidence 999999999976 799999999999999999998865555433 58999999999998888777654321110
Q ss_pred hhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcC
Q 035548 233 QEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQTMG 312 (518)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 312 (518)
....+.+..+..++++++.-|.+.+ ++..+...++....|+|.++.+.|
T Consensus 191 ---------------------------~~~~~~~~~~~~~vw~~~~aW~vtL----fmGlqS~~~Y~~~~WLP~ili~~G 239 (395)
T COG2807 191 ---------------------------AASIATKLVSVRKVWRSPLAWQVTL----FMGLQSLLYYIVIGWLPAILIDRG 239 (395)
T ss_pred ---------------------------ccccccccccccccccCchhHHHHH----HHHhhHHHHHHHHHHHHHHHHHcC
Confidence 0001111223344556555444433 334444567888999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhhhhhhhcc-CChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHH
Q 035548 313 YGSNASLLSAVISGTINVASTLVAIVLVDKA-GRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCV 391 (518)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (518)
+|..++|.+.+...+..++.++....+.+|. ++|........++.++.+.+.+. +....+.. ..+
T Consensus 240 ~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~-----------P~~~~~lw---~~l 305 (395)
T COG2807 240 LSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLA-----------PGQLPILW---ALL 305 (395)
T ss_pred CCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHh-----------hhhHHHHH---HHH
Confidence 9999999999999999999999999999975 45666666666666666666543 22222222 223
Q ss_pred HHHhhhccccccceeeecccC-ChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchh
Q 035548 392 FVAGFAWSWGPICWLISSEIY-PLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWG 449 (518)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~-p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (518)
.+.+.+.. .|+...++.... .++..+.-.|+.+.++++.+.++|.++|.+.|..|.+
T Consensus 306 lG~G~G~~-F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw 363 (395)
T COG2807 306 LGLGQGGA-FPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSW 363 (395)
T ss_pred HhCccchH-HHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCCh
Confidence 33332222 234444444433 3455677789999999999999999999999999843
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-25 Score=243.75 Aligned_cols=335 Identities=13% Similarity=0.005 Sum_probs=225.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHH---HHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhh
Q 035548 78 NQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQA---ASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVP 154 (518)
Q Consensus 78 ~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~---~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (518)
....++..+++.+++.++++++|+++||+|||+++.. ..++..+..+++...+++++++++|+++|++.+...|+..
T Consensus 51 ~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~ 130 (1140)
T PRK06814 51 NALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKY 130 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHH
Confidence 3567889999999999999999999999999997643 2233333333344458999999999999999999999999
Q ss_pred hHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccCChhhHHhcCChh
Q 035548 155 LFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQE 234 (518)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~ 234 (518)
+++.+++++++|++++++.+++.++|.++||++++.+... .+|++.|++.++..++.+++.+++++++... ++...
T Consensus 131 a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 206 (1140)
T PRK06814 131 SILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATIS--GNFVILVALLMGIAVLGWLASLFIPKTGNAA--PDLKI 206 (1140)
T ss_pred HhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHhhCCCCCCCC--CCCee
Confidence 9999999999999999999999999999999998887653 5899999666666666666666677654210 00000
Q ss_pred HHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHHH-cCC
Q 035548 235 QGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQT-MGY 313 (518)
Q Consensus 235 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~ 313 (518)
+ ... ..+ ....++.+.+++..+...+...+ . ......+..+.|.++++ +|.
T Consensus 207 ~-----------~~~---~~~----------~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~p~~~~~~~g~ 258 (1140)
T PRK06814 207 D-----------RNI---IRS----------TITLLKYAKADKRIWLAILGISW---F-WLVGAVVLSQLPLLAKETLGG 258 (1140)
T ss_pred c-----------cch---HHH----------HHHHHHHHhcCchHHHHHHHHHH---H-HHHHHHHHHHhHHHHHHHcCC
Confidence 0 000 000 01123333333333332222222 2 22234455567777754 699
Q ss_pred CChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCC--------CCCCchhHHH
Q 035548 314 GSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTN--------TMPTVPAKVV 385 (518)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~ 385 (518)
+....+++.+..+++.+++.++.+++.++..+++.+..+.++.+++.+.+.+... ...... .....+.+..
T Consensus 259 ~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 337 (1140)
T PRK06814 259 DENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASS-SVPAEPAQLKSILVFLSKRHGWRI 337 (1140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhccc-ccccccccccchhhhhcccccHHH
Confidence 9999999999999999999999999998877766655555544444433332100 000000 0001223333
Q ss_pred HHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhcc
Q 035548 386 VILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKM 446 (518)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 446 (518)
.+..++++.+.+... +...+++.+..|++.+|+++|+.++...++..+++.+.+.+.+..
T Consensus 338 ~~~~~~~g~~~~~~~-~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~ 397 (1140)
T PRK06814 338 LIDLFGLAAAGGLYI-VPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALG 397 (1140)
T ss_pred HHHHHHHHHHHHHhH-HHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444444433332 334577899999999999999999999999999999999987543
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-25 Score=200.27 Aligned_cols=341 Identities=13% Similarity=0.049 Sum_probs=217.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhh
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVP 154 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (518)
+.+....|.+.+.+.+...+.++.+|.++||+|||+++.++++..+++.++.+++.|+..+.++|++.|+..| ......
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~r 142 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVIR 142 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHHH
Confidence 3567788999999999999999999999999999999999999999999999999999777777999999888 778899
Q ss_pred hHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccC-CCc--c-hHHHHhhhHHHHH-HHHHhhcccCChhhHHh
Q 035548 155 LFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIH-PYG--W-RISLGGAAVPALF-LLLGSCIIVETPASLIE 229 (518)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~-~~~--w-r~~f~~~~~~~~~-~~~~~~~~~e~p~~~~~ 229 (518)
++++|.+++|+|+++++..+..+++|.++||.+++.+.... ..| | -.+-++..+.... .....+++||+-+...+
T Consensus 143 AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~ 222 (451)
T KOG2615|consen 143 AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLPLRKR 222 (451)
T ss_pred HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccccchhh
Confidence 99999999999999999999999999999999998887611 111 1 1212233333333 44556778887432111
Q ss_pred cCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhH---HHHHHHHHHHHHhhchhHHHHhHHH
Q 035548 230 RGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQ---LICGTFIHMLQQLTGINVVMFYAPV 306 (518)
Q Consensus 230 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (518)
+ ++.....+ ..+.+++..... . ... ....+++.... .+..+.+..+.....+....++.+.
T Consensus 223 ~---~~~~~~~~----~~~~~~~~~~~~------~--~~~-v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~ 286 (451)
T KOG2615|consen 223 N---DEHSTLQE----AADDRLALLKFA------R--IFK-VAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLF 286 (451)
T ss_pred c---ccccchhh----hhhhhhhhcchh------h--hhh-hhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 1 11000000 000000000000 0 000 00111111111 1112222222222223333333333
Q ss_pred HH-HHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccC--ChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhH
Q 035548 307 LF-QTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAG--RKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAK 383 (518)
Q Consensus 307 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (518)
+. ..+|+++.+.|.+....++.+.+.........++.+ .+..+..+...+.-..+++.. .....
T Consensus 287 l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~-------------~~~~~ 353 (451)
T KOG2615|consen 287 LTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSL-------------ARTPV 353 (451)
T ss_pred hhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhc-------------cccch
Confidence 32 456999999999999988888888777777777765 333333333333222222222 12222
Q ss_pred HHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhcc
Q 035548 384 VVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKM 446 (518)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 446 (518)
.......+..+..... .+-...+.....|+++||+.+|+....+.++-++||.+.|.+..+.
T Consensus 354 ~l~~~s~l~sf~~A~~-vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws 415 (451)
T KOG2615|consen 354 VLYLGSTLKSFSTASV-VTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWS 415 (451)
T ss_pred hhhHHHHHHHHHHHHh-hHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEe
Confidence 2333333333333322 2334466788999999999999999999999999999998876544
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-23 Score=202.46 Aligned_cols=347 Identities=17% Similarity=0.139 Sum_probs=212.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhhhHHH
Q 035548 79 QYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFIS 158 (518)
Q Consensus 79 ~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~ 158 (518)
....|+.++..++.+++.++.|+++|.+|||.+++.+.++..+|+++++.++|...++.+..+.|+|.|... .....++
T Consensus 78 ~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~-~~~~~is 156 (599)
T PF06609_consen 78 DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQE-LAALAIS 156 (599)
T ss_pred ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHH-HHHHHHH
Confidence 445899999999999999999999999999999999999999999999999999999999999999987665 4566689
Q ss_pred hcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccCChhhHHhcCChhHHHH
Q 035548 159 EIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLY 238 (518)
Q Consensus 159 ~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~a~~ 238 (518)
|..|.|.|....++..........+++.++..+.. +.+|||.|++.++...+.+++.+++...|++...+++....++
T Consensus 157 El~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~--~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~ 234 (599)
T PF06609_consen 157 ELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA--HSGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKRE 234 (599)
T ss_pred HhcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc--CCCcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHH
Confidence 99999999888777776666666667777654432 2489999999988777654443332222333222222211112
Q ss_pred HHHhhhCCc-------------------------cHHHHHHHH-------HH--HHHhh--cccccchhhhcccCChhHH
Q 035548 239 TLRKIRGVK-------------------------DVEKEYAEI-------CR--ATEIS--NLIKHPYRSLMKKSSRPQL 282 (518)
Q Consensus 239 ~~~~~~~~~-------------------------~~~~~~~~~-------~~--~~~~~--~~~~~~~~~~~~~~~~~~~ 282 (518)
.++++.-.. +..+-.... .. --+.. .+++.-..++++++ +.+
T Consensus 235 ~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~--r~~ 312 (599)
T PF06609_consen 235 QLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDR--RGF 312 (599)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccc--hHH
Confidence 222221000 000000000 00 00110 01111223344432 222
Q ss_pred HHHHHHHHHHHhhchhHHHHhHHHH-HHHcCCCC---hHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHH-HHhHHHHH
Q 035548 283 ICGTFIHMLQQLTGINVVMFYAPVL-FQTMGYGS---NASLLSAVISGTINVASTLVAIVLVDKAGRKILL-VQAAIQMI 357 (518)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~-~~~~~~~~ 357 (518)
.....+.+... ..++....+.|.. ...++-+. ...++.....+++..++.++.+.+..+++|-|.. +++...+.
T Consensus 313 ~~~lvi~fi~G-~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~t 391 (599)
T PF06609_consen 313 AALLVISFISG-MNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMT 391 (599)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHH
Confidence 22222322322 2233443444443 34444443 2567778888888889999999999988765544 45544444
Q ss_pred HHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHH
Q 035548 358 ICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQ 437 (518)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~ 437 (518)
+++.++.... ++.. ...+....+.+.+.+....+ ....+.-..|++.-+++.|+..+++.+|+.++..
T Consensus 392 a~~Gama~~~----------~~n~-~~~i~~~~l~g~giG~~~~~-~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~a 459 (599)
T PF06609_consen 392 AFCGAMAAVR----------PDNK-NAAIAFLVLAGFGIGGILVP-AIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYA 459 (599)
T ss_pred HHHHHHHHcc----------CCCc-chHHHHHHHHHHhHHHHHHH-HHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHH
Confidence 4333333321 1111 12223333333333333322 2344566788899999999999999999999988
Q ss_pred HhHHHH
Q 035548 438 AFLSML 443 (518)
Q Consensus 438 ~~~~~~ 443 (518)
++..+.
T Consensus 460 Iy~~I~ 465 (599)
T PF06609_consen 460 IYNAIF 465 (599)
T ss_pred HHHHHH
Confidence 886554
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.8e-26 Score=203.59 Aligned_cols=390 Identities=13% Similarity=0.022 Sum_probs=265.5
Q ss_pred HHHHHHHHHhhhhhhcccccccccccchhHHHhhhh-------hhh-----------------hhh---------ccccc
Q 035548 24 LVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFP-------LVY-----------------EKK---------HRAKE 70 (518)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~-------~~~-----------------~~~---------~~~~~ 70 (518)
.+.+...+.+.+.++...+++.++. |.+..|.-- ... +.. ..+++
T Consensus 20 ~lilviv~ialllDnmL~~vivPii--P~~L~d~~~~p~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~ 97 (464)
T KOG3764|consen 20 PLILVIVSIALLLDNMLYTVIVPII--PGYLYDIQAEPTIIQPFFPISTAPIPPGSMSSFSSLNISTESTNASAGKSPAE 97 (464)
T ss_pred ceEEEEEehhhhccCccceeeeccC--ccHHHHhccCCccCccccccccCCCCCccccceecccCCccccccccccCchh
Confidence 3444555556678888888887766 677766520 000 000 00133
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhccc
Q 035548 71 DNYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGN 150 (518)
Q Consensus 71 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 150 (518)
+.+.+-++.++|++.+++.+...+.+++.|.+.||+|+|-.+++|+++...+++++++.+++++++++|.+||+|.+...
T Consensus 98 ~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~ 177 (464)
T KOG3764|consen 98 AISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFAD 177 (464)
T ss_pred ccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHH
Confidence 56677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHHHhcCCCCc-chhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccCChhhHHh
Q 035548 151 QAVPLFISEIAPPKY-RGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIE 229 (518)
Q Consensus 151 ~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~ 229 (518)
++..++++|.+|+++ |++++|+.-.+.++|.++||++++.++.. .|.+.+|++.++++++-..+.+++.|..+.
T Consensus 178 tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~--~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~--- 252 (464)
T KOG3764|consen 178 TSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEF--AGKSAPFLVLAIVLLLDGALQLLVIEPTEM--- 252 (464)
T ss_pred hhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhh--cCCcCcHHHHHHHHHHHHHHHHheeCcccc---
Confidence 999999999999776 79999999999999999999998888665 489999999999999977666665442210
Q ss_pred cCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHH-HH
Q 035548 230 RGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPV-LF 308 (518)
Q Consensus 230 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 308 (518)
.+.+..+..+++++++.+.. .........++. .....---.+. ..
T Consensus 253 ------------------------------~~~~~~~~~~~~~Ll~dP~I---~~~agai~~~n~-~lafLePtlslwm~ 298 (464)
T KOG3764|consen 253 ------------------------------DPDSTEQGTPMWSLLMDPYI---LLIAGAITFSNS-SLAFLEPTLSLWML 298 (464)
T ss_pred ------------------------------CccccccCccHHHHHhCchH---hhhhcchhhccc-hHHHhCcccHHHHH
Confidence 00012223455566554432 222222222211 11222222223 44
Q ss_pred HHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHH--HHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHH
Q 035548 309 QTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKIL--LVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVV 386 (518)
Q Consensus 309 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (518)
+++.-+..+.|+.+....+...++..+.|.+.||++..+. ...+.+..+.+.....++. .....+...
T Consensus 299 e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~----------~~~~L~vp~ 368 (464)
T KOG3764|consen 299 ETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFAT----------SIAQLWVPN 368 (464)
T ss_pred HhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhh----------hHHHHhhhh
Confidence 6666555588999999999999999999999999994333 3333333333333332221 112223333
Q ss_pred HHHHHHHHhhhccccccceeeecccCChh---hhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchh-hHHHHHHHHHHHH
Q 035548 387 ILVCVFVAGFAWSWGPICWLISSEIYPLE---TRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWG-IFFFFTGWLLISL 462 (518)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 462 (518)
...++.+........|.. .+..|.-..+ .-|..+++......++.+++|.+.|.+.+..|+. ...+++...++.+
T Consensus 369 ~~l~~~i~~~dasl~P~l-~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iya 447 (464)
T KOG3764|consen 369 FGLGFGIGLADASLIPTL-GYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYA 447 (464)
T ss_pred HHHHHHHHHHHHHHhhhh-HHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHH
Confidence 333333333333444443 2233433333 5688899999999999999999999999999843 3344444444444
Q ss_pred HHH
Q 035548 463 IFS 465 (518)
Q Consensus 463 ~~~ 465 (518)
-++
T Consensus 448 pvl 450 (464)
T KOG3764|consen 448 PVL 450 (464)
T ss_pred HHH
Confidence 333
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-25 Score=223.71 Aligned_cols=302 Identities=14% Similarity=0.070 Sum_probs=206.8
Q ss_pred HHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHH
Q 035548 31 AFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKP 110 (518)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~ 110 (518)
.+..+......+..+.+. +.+.++| +++..+.|++.+.+.++++++.++.|+++||+|||+
T Consensus 39 ~~~~~~~~~~~g~~~~~l--~~iek~F-----------------~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~ 99 (633)
T TIGR00805 39 TCAQLQGLLYNGLVNSSL--TTIERRF-----------------KLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPI 99 (633)
T ss_pred HHHHHHHHHHHHHHHhhc--hhhhhhh-----------------CCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcce
Confidence 334455555556665444 5666666 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhc---------------------------------------------------cHHHHHHHH
Q 035548 111 TIQAASVFFLIGAILNCLAQ---------------------------------------------------NLGMLIAGR 139 (518)
Q Consensus 111 ~l~~~~~l~~~~~~~~~~~~---------------------------------------------------~~~~l~~~r 139 (518)
++.++.++++++++++++.+ .+..++++|
T Consensus 100 ~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 179 (633)
T TIGR00805 100 VIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQ 179 (633)
T ss_pred EEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHH
Confidence 99999999999999988753 255778899
Q ss_pred HHhhhhhhcccchhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccC-CC-------------------cc
Q 035548 140 LSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIH-PY-------------------GW 199 (518)
Q Consensus 140 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~-~~-------------------~w 199 (518)
+++|+|.+..++...+++.|++|+++|+++++++..+..+|.++|+++++.+.... ++ +|
T Consensus 180 ~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaW 259 (633)
T TIGR00805 180 LLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAW 259 (633)
T ss_pred HHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHH
Confidence 99999999999999999999999999999999999999999999999987665321 00 27
Q ss_pred hHHHHhhhHHHHHHHHHhhcccCChhhHHhcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCCh
Q 035548 200 RISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSR 279 (518)
Q Consensus 200 r~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (518)
|..|++.+++.++..+.++++|++.+....+.+.+..++ +......+ +... +.....++.....+++++++.
T Consensus 260 wl~Fli~g~l~~l~~v~l~~~p~~lp~~~~~~~~~~~~~--~~~~~~~~--~~~~---~~~~~~~~~~~~~~~Ll~n~~- 331 (633)
T TIGR00805 260 WIGFLICGGVALLTSIPFFFFPKALPKEGKRVNVDVHET--EKLEKSED--KSRK---KNSDITKDFPKIIKRLLCNPI- 331 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccccCCcccccchhhhhh--hccccccc--ccch---hhhhhHHHHHHHHHHHHcCcH-
Confidence 788988888887766666667654321100000000000 00000000 0000 000000000122334444332
Q ss_pred hHHHHHHHHHHHHHhhchhHHHHhHHHHHH-HcCCCChHHHHHHHHHHH-HHHHHhhhhhhhhhccCC--hHHHHHhHHH
Q 035548 280 PQLICGTFIHMLQQLTGINVVMFYAPVLFQ-TMGYGSNASLLSAVISGT-INVASTLVAIVLVDKAGR--KILLVQAAIQ 355 (518)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~~--~~~~~~~~~~ 355 (518)
++...+..+.....+..+..|.|.+++ ++|+++.+++++.....+ +.+++.+++|+++||++. |+.+..+.+.
T Consensus 332 ---f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~ 408 (633)
T TIGR00805 332 ---YMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICL 408 (633)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHH
Confidence 333333333344456677778888886 579999999998887766 568899999999999984 4555555555
Q ss_pred HHHHHHH
Q 035548 356 MIICQCA 362 (518)
Q Consensus 356 ~~~~~~~ 362 (518)
..++.+.
T Consensus 409 ~~~~~~~ 415 (633)
T TIGR00805 409 STLSYLL 415 (633)
T ss_pred HHHHHHH
Confidence 5555433
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.4e-23 Score=200.86 Aligned_cols=378 Identities=12% Similarity=0.111 Sum_probs=231.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhh------ccHHHHHHHHHHhhhhhhc
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLA------QNLGMLIAGRLSLGIGVGF 148 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~------~~~~~l~~~r~l~G~~~g~ 148 (518)
|+|..+++++.++. ....+++++.|+++||+|||+++.++.++++++.++++++ ++++.+.+.|++.|+|.+.
T Consensus 58 gls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~ 136 (591)
T PTZ00207 58 NLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCML 136 (591)
T ss_pred CcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHH
Confidence 99999999998874 4556788889999999999999999999999999999997 6899999999999999999
Q ss_pred ccchhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHh-hc--ccCChh
Q 035548 149 GNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGS-CI--IVETPA 225 (518)
Q Consensus 149 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~--~~e~p~ 225 (518)
..+.....+.+|+| ++||++.++...+.++|.++.+.+...... .+|+..|++.+++.++..++. .+ .|+.|+
T Consensus 137 ~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~---~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~ 212 (591)
T PTZ00207 137 FDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS---DNTSAYFFFLMSFALVVGILAIVFMRLPPFHL 212 (591)
T ss_pred HHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHhheeCCcchh
Confidence 99999999999997 669999999999999999764444333322 268888888887777644433 33 344445
Q ss_pred hHHhcCChhHHHHHHHhhhCC--------------------------------------ccHHHHH-H--HH------H-
Q 035548 226 SLIERGKQEQGLYTLRKIRGV--------------------------------------KDVEKEY-A--EI------C- 257 (518)
Q Consensus 226 ~~~~~~~~~~a~~~~~~~~~~--------------------------------------~~~~~~~-~--~~------~- 257 (518)
+..++++.+++++..++..+. +...... . .. .
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~ 292 (591)
T PTZ00207 213 TGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPF 292 (591)
T ss_pred hcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 443443333333332221110 0000000 0 00 0
Q ss_pred -------------H-H----H----H----hhccc--------c---cchh-hhcccCChhHHHHHHHHHHHHHhhchhH
Q 035548 258 -------------R-A----T----E----ISNLI--------K---HPYR-SLMKKSSRPQLICGTFIHMLQQLTGINV 299 (518)
Q Consensus 258 -------------~-~----~----~----~~~~~--------~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (518)
+ + . + ....+ + .... .+++...... ++..+..+++.......
T Consensus 293 l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d-~Wll~~~~~cg~g~gl~ 371 (591)
T PTZ00207 293 MAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTAR-LWCLLWSIFCCVGAHFV 371 (591)
T ss_pred HhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhchh-HHHHHHHHHHhhCchhe
Confidence 0 0 0 0 00000 0 0000 1111111222 33444444444444445
Q ss_pred HHHhHHHHHHHc-CCCChH--HHHHHHHHHHHHHHHhhhhhhhhhccCChH---------HHHHhHHHHHHHHHHHHHHH
Q 035548 300 VMFYAPVLFQTM-GYGSNA--SLLSAVISGTINVASTLVAIVLVDKAGRKI---------LLVQAAIQMIICQCAIGVIL 367 (518)
Q Consensus 300 ~~~~~~~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 367 (518)
+.....++.+.+ |.+.+. ...+.++.++++.+|++..|++.....+|+ .+.+..+ +.++.+++.+..
T Consensus 372 ~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~ 450 (591)
T PTZ00207 372 IIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTL 450 (591)
T ss_pred eeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHC
Confidence 566677778888 773333 233778899999999999999873332222 1222222 333333333321
Q ss_pred HHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHH-HHHhHHHHhcc
Q 035548 368 KMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVI-AQAFLSMLCKM 446 (518)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~ 446 (518)
+ .....+..++.+.+++..+. +....++|+|. +.-|+-+-+.....-+|+.+. ..+.|.++|..
T Consensus 451 ----------p---~~~L~~~~~lvg~~~G~~~~-~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~e 515 (591)
T PTZ00207 451 ----------P---KAALPLPYFIAAFANGFMAA-TIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQ 515 (591)
T ss_pred ----------C---ccHhHHHHHHHHHHhhHhHH-HHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 12334444444455554443 44466899999 666877777766666777666 56778888753
Q ss_pred c--------------hhhHHHHHHHHHHHHHHHHhcccCCCC
Q 035548 447 R--------------WGIFFFFTGWLLISLIFSATMLPETKG 474 (518)
Q Consensus 447 ~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (518)
. ..++.++++++.++.+....+.-++++
T Consensus 516 a~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r~ 557 (591)
T PTZ00207 516 ADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYRR 557 (591)
T ss_pred HhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehHH
Confidence 2 136777777787777776665544443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-22 Score=200.78 Aligned_cols=383 Identities=10% Similarity=0.022 Sum_probs=234.8
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHhhHHhhhh-hccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccch
Q 035548 74 CKYDNQYLQLFTSSLYLAAIVACFLASIVCRK-FGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQA 152 (518)
Q Consensus 74 ~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr-~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 152 (518)
+|++..+.+++.+.+.++..++++++|+++|| +|||+++.++.++.+++.++.+++++++.+.++|++.|+|.|...+.
T Consensus 43 lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~ 122 (475)
T TIGR00924 43 LGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKAN 122 (475)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCC
Confidence 58999999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred hhhHHHhcCCCCc---chhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhccc----CChh
Q 035548 153 VPLFISEIAPPKY---RGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIV----ETPA 225 (518)
Q Consensus 153 ~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~----e~p~ 225 (518)
..++++|++|+++ |++++++.+.+.++|.++||.+++.+.. ..|||+.|++.++..++..+..++.+ +.|+
T Consensus 123 ~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~--~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~ 200 (475)
T TIGR00924 123 PSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAE--NYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGS 200 (475)
T ss_pred HHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHH--hcChHHHHHHHHHHHHHHHHHHHHcccccccCCC
Confidence 9999999998764 8889999999999999999999876653 35899999888765555444443333 2211
Q ss_pred hHHhcCChhHHHHHHHh---------------hhCCccHHHHHHH------HHHHHHhhcccccchhhhcccCChhHHHH
Q 035548 226 SLIERGKQEQGLYTLRK---------------IRGVKDVEKEYAE------ICRATEISNLIKHPYRSLMKKSSRPQLIC 284 (518)
Q Consensus 226 ~~~~~~~~~~a~~~~~~---------------~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (518)
.. ++.+.++....... ............. .........++ ...+..+ .+... ++
T Consensus 201 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~-~l 275 (475)
T TIGR00924 201 VP-DPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKP--RLDAVAR-NKMYA-YI 275 (475)
T ss_pred CC-CCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhc--cCCHHHH-hHHHH-HH
Confidence 00 00000100000000 0000000000000 00000000000 0000101 11111 22
Q ss_pred HHHHHHHHHhhchhHHHHhHHHHHHH-cCCCCh----HHHHHHHHHHHHHHHHhhhhhhhhhccCC-----hHHH--HHh
Q 035548 285 GTFIHMLQQLTGINVVMFYAPVLFQT-MGYGSN----ASLLSAVISGTINVASTLVAIVLVDKAGR-----KILL--VQA 352 (518)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~----~~~~~~~~~~~~~~~~~~~~g~l~d~~~~-----~~~~--~~~ 352 (518)
..++.....+..+.......+.+.++ .+.+.. ..+++..+..+..++..++..++..+.+| +... .++
T Consensus 276 ~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G 355 (475)
T TIGR00924 276 VLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLG 355 (475)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHH
Confidence 22222222233344444444544433 332211 25677777777777777665543333333 3333 566
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHH
Q 035548 353 AIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFT 432 (518)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~ 432 (518)
.++.+++...+.+.... .. .....+.++.+....+...+ .....|....+..+..|++.||+.+|+......+|.
T Consensus 356 ~~l~~~~~~~~~~~~~~--~~--~~~~~s~~~~i~~~~~~~~g-e~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~ 430 (475)
T TIGR00924 356 MLFCGASFLTFAASIWF--AD--AGGLTSPWFMVLIYLFQTLG-ELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGS 430 (475)
T ss_pred HHHHHHHHHHHHHHHhh--cC--CCCccCHHHHHHHHHHHHHH-HHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 66666666665543111 10 11123444444444444444 344456777888999999999999999999999999
Q ss_pred HHHHHHhHHHHhccchh-hHHHHHHHHHHHHHHHHhc
Q 035548 433 FVIAQAFLSMLCKMRWG-IFFFFTGWLLISLIFSATM 468 (518)
Q Consensus 433 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 468 (518)
.+++.+.....+..++. .+...+.++++..++.++.
T Consensus 431 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (475)
T TIGR00924 431 LLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALM 467 (475)
T ss_pred HHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 99999888776665543 3444444444444444443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-22 Score=196.72 Aligned_cols=369 Identities=8% Similarity=-0.063 Sum_probs=231.1
Q ss_pred HHHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHH--HHHHHHHHHHHHHhh-HHhhhh
Q 035548 29 IAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLF--TSSLYLAAIVACFLA-SIVCRK 105 (518)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~--~s~~~l~~~i~~~~~-G~l~dr 105 (518)
.+...++.+|...+...+.. |.+.++. |.|.+++|++ .+++.+...+.+|++ ++..||
T Consensus 5 ~~~~ly~~~g~~~~~~~p~l--p~~l~~~-----------------g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~ 65 (390)
T TIGR02718 5 TLGLLYLSQGIPIGLAMDAL--PTLLRED-----------------GAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWR 65 (390)
T ss_pred HHHHHHHHHHhHHHHHHHHH--HHHHHHc-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 34444577777777665443 5665555 8999999997 467788888888888 457999
Q ss_pred hccHHHHHHHHHHH-HHHHHHHH-h--hcc-HHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchhHHhHHHHHHHHH
Q 035548 106 FGRKPTIQAASVFF-LIGAILNC-L--AQN-LGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVG 180 (518)
Q Consensus 106 ~Grr~~l~~~~~l~-~~~~~~~~-~--~~~-~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 180 (518)
+||||.+++...+. +......+ + ..+ ..+++..-++.++..+...+...++..|..++++++...+....+..+|
T Consensus 66 ~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG 145 (390)
T TIGR02718 66 LGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIG 145 (390)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHH
Confidence 99999876665432 22222222 1 222 3344555666777788888888888899998888888888888888999
Q ss_pred HHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccCChhhHHhcCChhHHHHHHHhhhCCccHHHHHHHHHHHH
Q 035548 181 ILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRAT 260 (518)
Q Consensus 181 ~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 260 (518)
.++|+.....+. +..|||..|++.++..++..+..++++|+++. +.+.++
T Consensus 146 ~~~g~~~~~~l~--~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~---~~~~~~------------------------- 195 (390)
T TIGR02718 146 FFGGGAGTLVLF--GKFGQRPAFLLVACVPLASLVCVLWLKDRAVA---SPEAPL------------------------- 195 (390)
T ss_pred HHHHHHHHHHHH--HHhCHHHHHHHHHHHHHHHHHHHHHcCCCCcC---ccccch-------------------------
Confidence 999987754443 33589999999998877755555555443210 000000
Q ss_pred HhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCCChHHHHHHHHHHH-HHHHHhhhhhhh
Q 035548 261 EISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQTMGYGSNASLLSAVISGT-INVASTLVAIVL 339 (518)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l 339 (518)
++..+.++.+|++..+......++... .......+.+.++++.|+++++.+......+. ..+++.++.+++
T Consensus 196 ----~~~~~~~~~l~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l 267 (390)
T TIGR02718 196 ----ARRASLFRFFRRPLAWSLLALALLSAM----TAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWL 267 (390)
T ss_pred ----hhHHHHHHHHcCcCHHHHHHHHHHHHH----HHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 001123445555444433333322222 22334445666777789999999998887764 666778999999
Q ss_pred hhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCCh-hhhh
Q 035548 340 VDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPL-ETRN 418 (518)
Q Consensus 340 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~r~ 418 (518)
.||+++|+.+..+.....+..+......... .............+.....+... +.......+..++ +.++
T Consensus 268 ~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~g 339 (390)
T TIGR02718 268 VRRAGLWRTFILGVGLAGSLALLWFAQAAFW-------LAPGIAVAWSCSAFGSLITGITS-VAIYTAFMRFAGDGDQAG 339 (390)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHcc-------cCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCcccchH
Confidence 9999999988876655433322221111000 00111111222222112222222 2223334455554 7889
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHHH
Q 035548 419 AGYFFAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLISL 462 (518)
Q Consensus 419 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (518)
+.+++.+....++..++|.+.|.+.|..|+...+..+.++.+.+
T Consensus 340 ~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a 383 (390)
T TIGR02718 340 TDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLA 383 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888755554444444333
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-22 Score=199.92 Aligned_cols=354 Identities=9% Similarity=0.018 Sum_probs=216.6
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHhhHHhhhh-hccHHHHHHHHHHHHHHHHHHHhhccHHH-HHHHHHHhhhhhhcccc
Q 035548 74 CKYDNQYLQLFTSSLYLAAIVACFLASIVCRK-FGRKPTIQAASVFFLIGAILNCLAQNLGM-LIAGRLSLGIGVGFGNQ 151 (518)
Q Consensus 74 ~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr-~Grr~~l~~~~~l~~~~~~~~~~~~~~~~-l~~~r~l~G~~~g~~~~ 151 (518)
+|++..+.+++.+.+.....+..+++|+++|| +||||+++++.+++.++.++++++++... ++++|+++|+|.|...+
T Consensus 45 lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~ 124 (489)
T PRK10207 45 LGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKA 124 (489)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccC
Confidence 58999999999999999999999999999999 99999999999999999999999876554 55889999999999999
Q ss_pred hhhhHHHhcCCCCc--chhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccCChhhH--
Q 035548 152 AVPLFISEIAPPKY--RGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASL-- 227 (518)
Q Consensus 152 ~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~-- 227 (518)
...+++.|.+|+++ |++++++++.+.++|..+||.+++.+... .|||+.|++.++..++.++...+.++..+..
T Consensus 125 ~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~--~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~ 202 (489)
T PRK10207 125 NPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADK--FGYSVTYNLCGAGLIIALLVYFACRGMVKDIGS 202 (489)
T ss_pred CHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHHHHHHHHcchhhcccCC
Confidence 99999999998874 47799999999999999999998877543 5899999887654443443333333211100
Q ss_pred -HhcCChhHHHHH------------HHhhhCCccHHHHHHHH---HH---HHHhhcccccchhhhcccCChhHHHHHHH-
Q 035548 228 -IERGKQEQGLYT------------LRKIRGVKDVEKEYAEI---CR---ATEISNLIKHPYRSLMKKSSRPQLICGTF- 287 (518)
Q Consensus 228 -~~~~~~~~a~~~------------~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 287 (518)
.++.+.|..... .....+........... .. -...+. +. .+.+|+ +.+....
T Consensus 203 ~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~--~~--~~~~r~----r~~~~~~l 274 (489)
T PRK10207 203 EPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREAF--KL--DKTGRN----KMFVAFVL 274 (489)
T ss_pred CCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh--cC--CHHHHH----HHHHHHHH
Confidence 000001100000 00000000000000000 00 000000 00 012221 2222111
Q ss_pred -HHHHHHhhchhHHHHhHHHHHHH-c-----CCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChH-------HHHHhH
Q 035548 288 -IHMLQQLTGINVVMFYAPVLFQT-M-----GYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKI-------LLVQAA 353 (518)
Q Consensus 288 -~~~~~~~~~~~~~~~~~~~~~~~-~-----g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~-------~~~~~~ 353 (518)
+.....+..+....+..+.+.++ . |+.. ....+.....+..++..++.+++.||+++|+ .+.++.
T Consensus 275 ~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i-~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~ 353 (489)
T PRK10207 275 MLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSI-NPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGM 353 (489)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHhccccccceEE-CHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHH
Confidence 11222222233333444555542 2 2221 1233444555666677888899999999886 366666
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHH
Q 035548 354 IQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTF 433 (518)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~ 433 (518)
++.+++++.+........ . .....+.++.+....+.+.+... ..+....++.+..|++.++.++|+.+....+|+.
T Consensus 354 ~l~~~~~~~~~~~~~~~~-~--~~~~~s~~~~i~~~~l~g~Ge~~-~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~ 429 (489)
T PRK10207 354 FLCSLGFLTAAAAGMWFA-D--AQGLTSPWFIVLVYLFQSLGELF-ISALGLAMIAALVPQHLMGFILGMWFLTQAAAFL 429 (489)
T ss_pred HHHHHHHHHHHHHHHhhc-C--CCCccCHHHHHHHHHHHHHHHHH-HhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 666666554432111010 0 00122334444444444444433 3455567788899999999999999999999999
Q ss_pred HHHHHhHHH
Q 035548 434 VIAQAFLSM 442 (518)
Q Consensus 434 ~~~~~~~~~ 442 (518)
++..+....
T Consensus 430 lg~~l~~~~ 438 (489)
T PRK10207 430 LGGYVATFT 438 (489)
T ss_pred HHHHHHHHh
Confidence 988887654
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.5e-22 Score=195.28 Aligned_cols=335 Identities=11% Similarity=0.040 Sum_probs=210.2
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHhhHHhhh----hhcc-HHHHHHHHHHHHHHHHHHHhhcc------HHHHHHHHHH
Q 035548 73 YCKYDNQYLQLFTSSLYLAAIVACFLASIVCR----KFGR-KPTIQAASVFFLIGAILNCLAQN------LGMLIAGRLS 141 (518)
Q Consensus 73 ~~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~d----r~Gr-r~~l~~~~~l~~~~~~~~~~~~~------~~~l~~~r~l 141 (518)
.+|++..++|.+..+.-+..++..|+.|.++| |+|| |+.++++.+..+++..++...++ +..+++.-++
T Consensus 36 v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l 115 (473)
T PRK10429 36 VVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYIL 115 (473)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH
Confidence 35899999999999999999999999999999 6698 66777788888887666644331 3456666777
Q ss_pred hhhhhhcccchhhhHHHhcC-CCCcchhHHhHHHHHHHHHHHHHHHHHhhc----c-ccCCCcchHHHHhhhHHHHHHHH
Q 035548 142 LGIGVGFGNQAVPLFISEIA-PPKYRGGLNICFQLLITVGILAANLINYGT----S-RIHPYGWRISLGGAAVPALFLLL 215 (518)
Q Consensus 142 ~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~----~-~~~~~~wr~~f~~~~~~~~~~~~ 215 (518)
.+++.....+...+++.|.. ++++|.+..++...+.++|..+.+.+...+ . ..+..+|+....+.+++.++..+
T Consensus 116 ~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~ 195 (473)
T PRK10429 116 WGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTI 195 (473)
T ss_pred HHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999 588899999987777777755554443211 1 11123688877777777666443
Q ss_pred -HhhcccCChhhHHhcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccC-ChhHHHHHHHHHHHHH
Q 035548 216 -GSCIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKS-SRPQLICGTFIHMLQQ 293 (518)
Q Consensus 216 -~~~~~~e~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 293 (518)
..+..+|.+... + + +.+++++.++++.++.. +++++...+...++.
T Consensus 196 ~~~~~~~e~~~~~----~-~--------------------------~~~~~~~~~~~~~~~~~~~n~~~~~ll~~~~~~- 243 (473)
T PRK10429 196 ITLRNVHEVYSSD----N-Q--------------------------VSAEGSHLTLKDIVALIYKNDQLSCLLGMALAY- 243 (473)
T ss_pred HHHcCceecCCcc----c-c--------------------------ccccccCCCHHHHHHHHhcCHHHHHHHHHHHHH-
Confidence 334456543100 0 0 00000122233333211 222323222222222
Q ss_pred hhchhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhccc
Q 035548 294 LTGINVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLT 373 (518)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (518)
.........+.+++.+....+....+.+.....+..+++.++.+++.||+|+|+.+..+..+..++.+.+......
T Consensus 244 ~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~---- 319 (473)
T PRK10429 244 NIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLA---- 319 (473)
T ss_pred HHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhcc----
Confidence 2233444444555555443344555666666778889999999999999999999887776555554443322100
Q ss_pred CCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCC-------hhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhcc
Q 035548 374 TNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYP-------LETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKM 446 (518)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 446 (518)
.....+..++...+.+.+.+... +..+++.+|..+ .+..|..+|.......++..+++.+.|.+++..
T Consensus 320 ----~~~~~~~~~i~~~l~g~~~~~~~-~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~ 394 (473)
T PRK10429 320 ----APHNALLIVIAGILLNIGTALFW-VLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLI 394 (473)
T ss_pred ----CchhHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 12223333333333333333322 344566777755 334566789999999999999999999998876
Q ss_pred ch
Q 035548 447 RW 448 (518)
Q Consensus 447 ~~ 448 (518)
|+
T Consensus 395 Gy 396 (473)
T PRK10429 395 GY 396 (473)
T ss_pred CC
Confidence 54
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.8e-21 Score=184.78 Aligned_cols=376 Identities=11% Similarity=0.084 Sum_probs=232.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhh----hhccHHHHHHH-HHHHHHHHHHHHhhccHH----------------
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCR----KFGRKPTIQAA-SVFFLIGAILNCLAQNLG---------------- 133 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~d----r~Grr~~l~~~-~~l~~~~~~~~~~~~~~~---------------- 133 (518)
|.+..+.+++..+..+...+.+|+.|+++| |+||||.++++ .+...++.++++++++.+
T Consensus 35 g~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i 114 (477)
T TIGR01301 35 GIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAI 114 (477)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHH
Confidence 889999999999999999999999999999 59999988875 666666667777776643
Q ss_pred -HHHHHHHHhhhhhhcccchhhhHHHhcCCCCcc--hhHHhHHHHHHHHHHHHHHHHHhhccccC-------------CC
Q 035548 134 -MLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYR--GGLNICFQLLITVGILAANLINYGTSRIH-------------PY 197 (518)
Q Consensus 134 -~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~i~~~i~~~~~~~~-------------~~ 197 (518)
.++++-.+..++.....+...++++|.+|+++| +.+.++.+...++|.++|+.+++...... ..
T Consensus 115 ~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~ 194 (477)
T TIGR01301 115 IVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCA 194 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccc
Confidence 223333344557888888999999999998865 57999999999999999999886541110 02
Q ss_pred cchHHHHhhhHHHHHHHH-HhhcccCChhhHHhcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhccc
Q 035548 198 GWRISLGGAAVPALFLLL-GSCIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKK 276 (518)
Q Consensus 198 ~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (518)
+.|..|++.++..++..+ ..+..+|.|....++.+.++ .+. .++.+....++++++.
T Consensus 195 ~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~-------~~~---------------~~~~~~~~~~~~i~~~ 252 (477)
T TIGR01301 195 NLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSE-------AAP---------------PSKHGEEAFFGELFGA 252 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhh-------ccc---------------ccccchhhhHHHHHHH
Confidence 578899998887777544 44557786531100000000 000 0000001122333321
Q ss_pred -CChhHHH-HHHHHHHHHHhhchhHHHHhHHHHH-HH-cCCCCh------H----HHHHHHHHHHHHHHHhhhhhhhhhc
Q 035548 277 -SSRPQLI-CGTFIHMLQQLTGINVVMFYAPVLF-QT-MGYGSN------A----SLLSAVISGTINVASTLVAIVLVDK 342 (518)
Q Consensus 277 -~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~g~~~~------~----~~~~~~~~~~~~~~~~~~~g~l~d~ 342 (518)
+..++.+ ..+...++.+ .+...+..|.+.+. ++ ++-++. + ..+......+...+.+++..++.+|
T Consensus 253 ~~~mP~~m~~l~~vqffsW-~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~ 331 (477)
T TIGR01301 253 FKYLPRPVWILLLVTCLNW-IAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRG 331 (477)
T ss_pred HHHCCHHHHHHHHHHHHHH-HHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122223 3333444433 34444555555544 33 332221 1 2234455556666777788889999
Q ss_pred cCC-hHHHHHhHHHHHHHHHHHHHHHHHhcc--c-----CCCCCCch-hHHHHHHHHHHHHhhhccccccceeeecccCC
Q 035548 343 AGR-KILLVQAAIQMIICQCAIGVILKMFLL--T-----TNTMPTVP-AKVVVILVCVFVAGFAWSWGPICWLISSEIYP 413 (518)
Q Consensus 343 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 413 (518)
+|+ |+....+.++.++++....+....... . ....+... .+..+..+...+...... ..++++++++..+
T Consensus 332 ~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~-~siPfal~s~~~~ 410 (477)
T TIGR01301 332 WGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAIT-YSIPFALASIRSS 410 (477)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHH-HHHhHHHHHHHcc
Confidence 985 677677877777777766654321000 0 00000000 244444455555554443 3577888899888
Q ss_pred h--hhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccch---hhHHHHHHHHHHHHHHHHhcccCCCC
Q 035548 414 L--ETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRW---GIFFFFTGWLLISLIFSATMLPETKG 474 (518)
Q Consensus 414 ~--~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (518)
+ +..|..+|+.|.+..+...+.....|.+.+..+. ..+.+-++..+++++...+.+|+++.
T Consensus 411 ~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 411 NLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred ccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 5 4559999999999999999999888886666652 24444444556666667777776543
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.1e-21 Score=190.59 Aligned_cols=354 Identities=11% Similarity=0.067 Sum_probs=204.0
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHhhHHhhhh-hccHHHHHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHhhhhhhcccc
Q 035548 74 CKYDNQYLQLFTSSLYLAAIVACFLASIVCRK-FGRKPTIQAASVFFLIGAILNCLAQ-NLGMLIAGRLSLGIGVGFGNQ 151 (518)
Q Consensus 74 ~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr-~Grr~~l~~~~~l~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~ 151 (518)
+|++..+.+++.+.+........+++|+++|| +|||+++..+.++.+++.+++++++ +.+.+.++|+++|++.|...+
T Consensus 52 lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~ 131 (500)
T PRK09584 52 LGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKA 131 (500)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccC
Confidence 48999999999888877767777899999999 5999999999999999999998874 566778889999999999999
Q ss_pred hhhhHHHhcCCCCc--chhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhh----cccCChh
Q 035548 152 AVPLFISEIAPPKY--RGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSC----IIVETPA 225 (518)
Q Consensus 152 ~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~----~~~e~p~ 225 (518)
...+++.|++|+++ |..++++++.+.++|..+||.+++.+.. ..|||+.|++.++..++.++..+ .+++.++
T Consensus 132 ~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~--~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~ 209 (500)
T PRK09584 132 NPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAA--KYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGS 209 (500)
T ss_pred CHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCC
Confidence 99999999998654 4567889999999999999999877654 35899999988765444333222 2333211
Q ss_pred hHHhcCChhHHHHH-----------HHhh-hCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHH
Q 035548 226 SLIERGKQEQGLYT-----------LRKI-RGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQ 293 (518)
Q Consensus 226 ~~~~~~~~~~a~~~-----------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (518)
.. .+++.+..... .... ....+...................... ..+...+++.+..+.+. ..
T Consensus 210 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~- 284 (500)
T PRK09584 210 KP-DFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVIFGKEAF--AMKGAARRKMIVAFILM-LE- 284 (500)
T ss_pred CC-CccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHh--hcCHHHHHHHHHHHHHH-HH-
Confidence 00 00001100000 0000 000000000000000000000000000 00011122222222111 11
Q ss_pred hhchhHHHHhHHHHHHH-----c-----CCCChHHHHHHHHHHHHHHHHhhhh----hhhhhccCChHHHHHhHHHHHHH
Q 035548 294 LTGINVVMFYAPVLFQT-----M-----GYGSNASLLSAVISGTINVASTLVA----IVLVDKAGRKILLVQAAIQMIIC 359 (518)
Q Consensus 294 ~~~~~~~~~~~~~~~~~-----~-----g~~~~~~~~~~~~~~~~~~~~~~~~----g~l~d~~~~~~~~~~~~~~~~~~ 359 (518)
...++......+..+.. . |+. ...+.+.....+..++..++. +++.+|.+..+.+.++.++.+++
T Consensus 285 ~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~-i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~ 363 (500)
T PRK09584 285 AIIFFVLYSQMPTSLNFFAIRNVEHSILGIA-VEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGA 363 (500)
T ss_pred HHHHHHHHHHhccHHHHHHHHhccccccceE-ECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHH
Confidence 11122222222322211 1 111 124455566666666666665 44555555557777888888888
Q ss_pred HHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHh
Q 035548 360 QCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAF 439 (518)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~ 439 (518)
++.+....... +.....+.++.+....+.+.+ .....|....++.+..|++.||..+|+......++..++..+.
T Consensus 364 f~~l~~~~~~~----~~~~~vs~~~~~~~~~l~~~g-e~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~ 438 (500)
T PRK09584 364 FLVLPLGAKFA----NDAGIVSVNWLIASYGLQSIG-ELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVA 438 (500)
T ss_pred HHHHHHHHHhc----CCCCccCHHHHHHHHHHHHHH-HHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77765542210 000112233333333333333 3444567778889999999999999988777777777776666
Q ss_pred H
Q 035548 440 L 440 (518)
Q Consensus 440 ~ 440 (518)
+
T Consensus 439 ~ 439 (500)
T PRK09584 439 N 439 (500)
T ss_pred H
Confidence 4
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.9e-20 Score=176.59 Aligned_cols=325 Identities=13% Similarity=0.054 Sum_probs=220.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchh
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFG-RKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAV 153 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~G-rr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 153 (518)
|+|..|+|.+.+...+...++++++|.++||.+ +||++.+..++.++...+....++++.+++.-++..+......|..
T Consensus 33 G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~ 112 (400)
T PF03825_consen 33 GFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLS 112 (400)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccHHHHH
Confidence 899999999999999999999999999999986 5788888888887777777788999999999888898888889999
Q ss_pred hhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHH-hhccc-cCCCcchHHHHhhhHHHHHHHHHhhcccCChhhHHhcC
Q 035548 154 PLFISEIAPPKYRGGLNICFQLLITVGILAANLIN-YGTSR-IHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERG 231 (518)
Q Consensus 154 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~-~~~~~-~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~ 231 (518)
.++..+...++ ++-.|-.-...++|.+++.... ..... .+..+....+++.+..+++.....+.+|+.|+.. .
T Consensus 113 dsi~~~~~~~~--~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~lp~~~~~~---~ 187 (400)
T PF03825_consen 113 DSIALSYLGDR--GKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALFLPKTPPKR---S 187 (400)
T ss_pred HHHHHHHcccc--cCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHhCCCCcccc---c
Confidence 99988887632 3334444444555555553321 11111 1111233456666666555555566678766210 0
Q ss_pred ChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHc
Q 035548 232 KQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQTM 311 (518)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (518)
.++ +.++....+..+++|++.....++.. +...........|.+.++++.
T Consensus 188 ~~~--------------------------~~~~~~~~~~~~llk~~~~~~Fll~~----~l~~~~~~~~~~f~~~yl~~~ 237 (400)
T PF03825_consen 188 AKE--------------------------SVKKLLGLDALKLLKNPRFLVFLLAA----FLIGISHAAYYTFFSIYLQEL 237 (400)
T ss_pred cCC--------------------------CcccccchHHHHHhcCccHHHHHHHH----HHHHHHHHHHHHHHHHHHHHc
Confidence 000 00000011122444444433222222 222334556677788888988
Q ss_pred C-CCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHH-
Q 035548 312 G-YGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILV- 389 (518)
Q Consensus 312 g-~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 389 (518)
| .+....+...++..+..++.-...+++.+|+|.|+++.++.+..++=..++... .++.+......
T Consensus 238 gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~------------~~~~~~~~~~~~ 305 (400)
T PF03825_consen 238 GGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYF------------SDPWPFIVALQL 305 (400)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh------------cCCcHHHHHHHH
Confidence 7 777888888888889999999999999999999999998888877777776653 12222222222
Q ss_pred ---HHHHHhhhccccccceeeecccCChhhhhhHHHHHHHH-HHHHHHHHHHHhHHHHhccc
Q 035548 390 ---CVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVST-NMVFTFVIAQAFLSMLCKMR 447 (518)
Q Consensus 390 ---~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~ 447 (518)
.+.+..++.... ....++.+..|++.|+++.++.+.. ..+|..++..+.|++.|..+
T Consensus 306 l~q~lhG~tf~~~~~-a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g 366 (400)
T PF03825_consen 306 LGQLLHGLTFGLFHA-ASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFG 366 (400)
T ss_pred HHHhhhhHHHHHHHH-HHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 234444443332 3446789999999999999998876 46899999999999999876
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-20 Score=171.51 Aligned_cols=392 Identities=13% Similarity=0.090 Sum_probs=257.6
Q ss_pred CcchHHHHHHHHHHHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHHHHHHHH
Q 035548 17 AKLTGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVAC 96 (518)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~ 96 (518)
.+..+++|+.+++.++-.+.++...--++++. ++.+.|| + +....-|+..+|++.+....
T Consensus 37 ~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~---n~~~~~Y----------------g-s~~~~~wlsmIym~v~vp~g 96 (480)
T KOG2563|consen 37 HRVYPRRWVVLLAFSLLNFSNGMQWIQYAPIN---NYVNSFY----------------G-SSSAADWLSMIYMVVSVPFG 96 (480)
T ss_pred cccchhHhHHHHHHHHHHhcCcchheeehhHH---HHHHHHh----------------c-chHHHHHHHHHHHHHHHHHh
Confidence 45678889999998888888777665555443 4555553 5 67778899999999999999
Q ss_pred HhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhc------cHH--HHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchh
Q 035548 97 FLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQ------NLG--MLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGG 168 (518)
Q Consensus 97 ~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~------~~~--~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~ 168 (518)
+++-|+.|++|-|..++++..+.++++.+-..+. .++ ....+..+.+.++-.....-..+..-|+++++|..
T Consensus 97 f~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~ 176 (480)
T KOG2563|consen 97 FAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAI 176 (480)
T ss_pred hHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhh
Confidence 9999999999999999999999999998877652 345 67788899999888887777788889999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHhhccccC----CCcchH--HHHhhhHHHHHHHHHh-hcccCChhhHHhcCChhHHHHHHH
Q 035548 169 LNICFQLLITVGILAANLINYGTSRIH----PYGWRI--SLGGAAVPALFLLLGS-CIIVETPASLIERGKQEQGLYTLR 241 (518)
Q Consensus 169 ~~~~~~~~~~~G~~i~~~i~~~~~~~~----~~~wr~--~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~a~~~~~ 241 (518)
+..+-.++..+|.+++.++...+.... +..|.. .|+....++.+.+.+. +..++.|+..... +
T Consensus 177 A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~-----s----- 246 (480)
T KOG2563|consen 177 ATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSA-----S----- 246 (480)
T ss_pred hhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCch-----h-----
Confidence 999999998999998888876665443 356765 3554444444433322 3333333211000 0
Q ss_pred hhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCCChHHHHH
Q 035548 242 KIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQTMGYGSNASLLS 321 (518)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 321 (518)
+..+.+.+-..+.++.++++. +++. .+........++...+.+...+...|++...+|..
T Consensus 247 ----------------~~~~~~~~f~~si~~~~~n~~---F~il-~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~i 306 (480)
T KOG2563|consen 247 ----------------QAALQDASFPKSIKSCFKNRQ---FIIL-AICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYI 306 (480)
T ss_pred ----------------HhhhhcCcHHHHHHHHHcCcc---HHHH-HHHHhhhHHHHHHHHHHhhhccccccCCccccchh
Confidence 000001111233444444443 2332 23333333344444444443444457877889999
Q ss_pred HHHHHHHHHHHhhhhhhhhhccCChHH-HHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccc
Q 035548 322 AVISGTINVASTLVAIVLVDKAGRKIL-LVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSW 400 (518)
Q Consensus 322 ~~~~~~~~~~~~~~~g~l~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (518)
.....+++++++.+.|.+.||.++.+. ..+......++...+.... ......+++...+...+.+..+.
T Consensus 307 g~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t----------~~~~~~viv~~t~~~~g~~~~~~ 376 (480)
T KOG2563|consen 307 GALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCT----------LFLGDSVIVFTTCGLLGFFGTGY 376 (480)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh----------ccCCceEehhhhHHHHHHhhcCC
Confidence 999999999999999999999876544 3334343333322221111 11222223333334444455666
Q ss_pred cccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccc----hhhHHHHHH-HHHHHHHHHHhc
Q 035548 401 GPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMR----WGIFFFFTG-WLLISLIFSATM 468 (518)
Q Consensus 401 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~ 468 (518)
.|+...+..|..-+..-++..|+.+..+++.+++-..+.+...+..+ +....+... .+.+...+..++
T Consensus 377 ~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~ 449 (480)
T KOG2563|consen 377 LPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFF 449 (480)
T ss_pred CCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhh
Confidence 78888888887655655889999999999999999999999888776 443334444 444444444443
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-20 Score=184.13 Aligned_cols=329 Identities=12% Similarity=0.049 Sum_probs=206.8
Q ss_pred cccCCChhHHHHHHHHHHHHHHHHHHhhHHhhhh----hcc-HHHHHHHHHHHHHHHHHHHhhcc------HHHHHHHHH
Q 035548 72 NYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRK----FGR-KPTIQAASVFFLIGAILNCLAQN------LGMLIAGRL 140 (518)
Q Consensus 72 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr----~Gr-r~~l~~~~~l~~~~~~~~~~~~~------~~~l~~~r~ 140 (518)
+++|++..++|.+.++..+..++..|+.|+++|| +|| |+.++.+.+..+++.++....++ ++++++..+
T Consensus 38 ~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~ 117 (444)
T PRK09669 38 DVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYI 117 (444)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHH
Confidence 3459999999999999999999999999999998 777 56666787777777766555543 456666777
Q ss_pred HhhhhhhcccchhhhHHHhcC-CCCcchhHHhHHHHHHHHHHHHHHHHHhhccc-----cCCCcchHHHHhhhHHHHHHH
Q 035548 141 SLGIGVGFGNQAVPLFISEIA-PPKYRGGLNICFQLLITVGILAANLINYGTSR-----IHPYGWRISLGGAAVPALFLL 214 (518)
Q Consensus 141 l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~-----~~~~~wr~~f~~~~~~~~~~~ 214 (518)
+.+.+.........++.+|+. ++++|++..++...+..+|..+++.+...+.. ....+|+..+.+.++++++..
T Consensus 118 l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~ 197 (444)
T PRK09669 118 LLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLF 197 (444)
T ss_pred HHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence 778777778788889999988 55779988888888888887777654322111 113589988888888776654
Q ss_pred HHh-hcccCChhhHHhcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHH
Q 035548 215 LGS-CIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQ 293 (518)
Q Consensus 215 ~~~-~~~~e~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (518)
+.. +..+|.++. + + +++.+.....++.++++..+......++....
T Consensus 198 ~~~~~~~~e~~~~-----~-~--------------------------~~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~- 244 (444)
T PRK09669 198 FCCFFMTKERYTP-----E-V--------------------------DNSSSVWKDLKLLLGNSQWRIMFIFNVVLLTA- 244 (444)
T ss_pred HHHhCCeEEecCC-----C-C--------------------------cCCCCHHHHHHHHhCCchHHHHHHHHHHHHHH-
Confidence 443 334443210 0 0 00000112234444544443333322222111
Q ss_pred hhchhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhccc
Q 035548 294 LTGINVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLT 373 (518)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (518)
........+++.+..-.+.+..+.......+..+++.++.+++.||+|+|+.+..+.....+....+.+.
T Consensus 245 ---~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~------- 314 (444)
T PRK09669 245 ---VVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFI------- 314 (444)
T ss_pred ---HHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh-------
Confidence 1222222333333221123333445555567778888899999999999999887765544433322221
Q ss_pred CCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCC-------hhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhcc
Q 035548 374 TNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYP-------LETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKM 446 (518)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 446 (518)
+..+.+..++...+.+.+.+. ..+..+++.+|..+ .+..|..+|+.+....++..+++.+.|.+++..
T Consensus 315 ----~~~~~~~~~~~~~i~g~~~~~-~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~ 389 (444)
T PRK09669 315 ----PPSNVWLIFALNILFNFIQNL-TTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWV 389 (444)
T ss_pred ----CcchHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 223333334444444444443 33566677777765 234466788888999999999999999999877
Q ss_pred ch
Q 035548 447 RW 448 (518)
Q Consensus 447 ~~ 448 (518)
|+
T Consensus 390 Gy 391 (444)
T PRK09669 390 DY 391 (444)
T ss_pred CC
Confidence 64
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-20 Score=185.70 Aligned_cols=361 Identities=11% Similarity=-0.038 Sum_probs=224.6
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhc-----cHHHHHHHHHHHH-HHHHHHHhhccHHHHH-HHHHHhhhhh
Q 035548 74 CKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFG-----RKPTIQAASVFFL-IGAILNCLAQNLGMLI-AGRLSLGIGV 146 (518)
Q Consensus 74 ~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~G-----rr~~l~~~~~l~~-~~~~~~~~~~~~~~l~-~~r~l~G~~~ 146 (518)
+|++.++++...++..+...+-.+ +|+++||++ ||+.++++.++.+ ++....+..++..... +.+++.+++.
T Consensus 56 lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~ 134 (468)
T TIGR00788 56 LGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAK 134 (468)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 399999999999999999999766 999999998 7888888877763 4433344445544444 4899999999
Q ss_pred hcccchhhhHHHhcCCCCcchhHH---hHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccCC
Q 035548 147 GFGNQAVPLFISEIAPPKYRGGLN---ICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVET 223 (518)
Q Consensus 147 g~~~~~~~~~i~~~~~~~~r~~~~---~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~ 223 (518)
+...++..++..|..+ +++.... +.......+|.++++.+++.+.. ..+||..|++.+++.++..+...+++|+
T Consensus 135 a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~--~~~~~~~f~~~a~l~ll~~~~~~~~~E~ 211 (468)
T TIGR00788 135 ALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLD--KTLTRILFLITAALLLLQLFVSNLSKER 211 (468)
T ss_pred HHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHH--hcCcchHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999998 5454433 33333445899999998776653 3589999999888877776666777775
Q ss_pred hhhHHhcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHh
Q 035548 224 PASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFY 303 (518)
Q Consensus 224 p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (518)
+.....+.+.++.... .... .... +..++......+.++++..++.+...++.+. .... .....+
T Consensus 212 ~~~~~~~~~~~~~~~~---------~~~~-~~~~---~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~-~~~~-~~~~~f 276 (468)
T TIGR00788 212 RAFVRPRIGTYLEMNM---------ALLT-LGVL---ANVKVQILGLRGAIQLLEIAKPLIFIFLSYA-NLPG-ASGSVF 276 (468)
T ss_pred cccccccccccchhhh---------hhhh-hhHH---HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHh-hcCC-CCceeE
Confidence 3110000000000000 0000 0000 0000000112222333322222222222111 1111 111111
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCC-Cchh
Q 035548 304 APVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMP-TVPA 382 (518)
Q Consensus 304 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 382 (518)
. ...+..|+++.+.|+.....+++.+++..+.+++.+|++.|+.+.++.++..++.+....... ..+... ....
T Consensus 277 ~-~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~----~~~~~~gi~~~ 351 (468)
T TIGR00788 277 C-ATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVK----RWNLAFGISDE 351 (468)
T ss_pred E-EEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeee----ccccccCCCCe
Confidence 1 112457999999999999999999999999999999999999988887777766644321110 000000 0112
Q ss_pred HHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccc-----hhhHHHHHHH
Q 035548 383 KVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMR-----WGIFFFFTGW 457 (518)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 457 (518)
+.......+...+.+....+. ..++.+..|++.+|+.+++.+.+.+++..+++.+.+.+.+..| +..++....+
T Consensus 352 ~~~~~~~~l~~~~~g~~~~~~-~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i 430 (468)
T TIGR00788 352 VFVLGDSIIAEVLAQLKFMPF-LVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILG 430 (468)
T ss_pred eeeeehhHHHHHHHHHHHccH-HHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHH
Confidence 223333334444444444444 5678899999999999999999999999999999999998877 4444444444
Q ss_pred HH
Q 035548 458 LL 459 (518)
Q Consensus 458 ~~ 459 (518)
+.
T Consensus 431 ~~ 432 (468)
T TIGR00788 431 HS 432 (468)
T ss_pred HH
Confidence 33
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-18 Score=167.68 Aligned_cols=363 Identities=13% Similarity=0.050 Sum_probs=232.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHH-HHHHHHHHHHHHHHhh-c-cHHHHHHHHHHhhhhhhcccchhh
Q 035548 78 NQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQ-AASVFFLIGAILNCLA-Q-NLGMLIAGRLSLGIGVGFGNQAVP 154 (518)
Q Consensus 78 ~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~-~~~~l~~~~~~~~~~~-~-~~~~l~~~r~l~G~~~g~~~~~~~ 154 (518)
.+..++..++..+..++..|+.|.++|+-|+||.++ +...+..+++.++.+. + +++...+.-++.-++.+.......
T Consensus 69 ~s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyn 148 (477)
T PF11700_consen 69 SSLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYN 148 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345578889999999999999999999998766555 4555555666666663 3 455555556666678888889999
Q ss_pred hHHHhcCCCCcc--------------------------hhHHhHHHHHHHHHHHHHHHHHhhccccCC------CcchHH
Q 035548 155 LFISEIAPPKYR--------------------------GGLNICFQLLITVGILAANLINYGTSRIHP------YGWRIS 202 (518)
Q Consensus 155 ~~i~~~~~~~~r--------------------------~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~------~~wr~~ 202 (518)
+++.|..+++++ ++..+.-.....+|.++.-++...+....+ .+-|..
T Consensus 149 a~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~ 228 (477)
T PF11700_consen 149 AYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVA 228 (477)
T ss_pred HHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHH
Confidence 999999999988 899999888888888888777554432221 235888
Q ss_pred HHhhhHHHHH-HHHHhhcccCChhhHHhcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhH
Q 035548 203 LGGAAVPALF-LLLGSCIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQ 281 (518)
Q Consensus 203 f~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (518)
+.+.++.-++ .+...+++||.|+....+..........+ +. ...+++..+ .+.
T Consensus 229 ~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~-------------~l----------~~t~k~~~~---~~~ 282 (477)
T PF11700_consen 229 FLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFK-------------RL----------WRTFKEIRK---LRQ 282 (477)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHH-------------HH----------HHHHHHHHh---ChH
Confidence 8888887655 55566678877641000000000000000 00 112222222 222
Q ss_pred HHHHHHHHHHHHhhchhHHHHhHHHHHH-HcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCCh--HHHHHhHHHHHH
Q 035548 282 LICGTFIHMLQQLTGINVVMFYAPVLFQ-TMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRK--ILLVQAAIQMII 358 (518)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~--~~~~~~~~~~~~ 358 (518)
...+++..+...-+...+......+.+ ++|++..+...+.....+.+++|+++.+++.||+|.| +++..+.....+
T Consensus 283 -~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~ 361 (477)
T PF11700_consen 283 -LFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWII 361 (477)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence 333344444444455666666666665 7899999999999999999999999999999999998 676655554432
Q ss_pred HHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 035548 359 CQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQA 438 (518)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~ 438 (518)
..+.-.+... . . .....+.+...+...+.+...+ ...+..-++.+|+.|+++.+..+|++...+...+.++|.+
T Consensus 362 i~~~g~~G~~-~---~-~~g~~~~~~f~~~a~~~G~~~G-~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll 435 (477)
T PF11700_consen 362 IPLYGLFGFW-P---S-FFGLKSPWEFWVLAVLIGLFMG-GIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLL 435 (477)
T ss_pred HHHHHHHHhh-h---c-ccCcccHHHHHHHHHHHHHHhh-hHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 2222111000 0 0 0012233333333333333333 3335666788999999999999999999999999999999
Q ss_pred hHHHHhccc-hhhHHHHHHHHHHHHHHHHhcccCCC
Q 035548 439 FLSMLCKMR-WGIFFFFTGWLLISLIFSATMLPETK 473 (518)
Q Consensus 439 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (518)
+|.+.+.++ ...-+....+.++..+++...++..|
T Consensus 436 ~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~~~ 471 (477)
T PF11700_consen 436 FGLITDATGSQRYGFLFLLVLFLIGLILLFFVDVEK 471 (477)
T ss_pred HHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccchh
Confidence 999999987 33333333334444444445454433
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-18 Score=169.92 Aligned_cols=326 Identities=11% Similarity=0.020 Sum_probs=198.0
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHhhHHhhhh----hccH-HHHHHHHHHHHHHHHHHHhhcc------HHHHHHHHHH
Q 035548 73 YCKYDNQYLQLFTSSLYLAAIVACFLASIVCRK----FGRK-PTIQAASVFFLIGAILNCLAQN------LGMLIAGRLS 141 (518)
Q Consensus 73 ~~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr----~Grr-~~l~~~~~l~~~~~~~~~~~~~------~~~l~~~r~l 141 (518)
.+|++...+|++..+.-+--++..|+.|.++|| +||| +.++++.+..+++.+++...++ ...+.+.-++
T Consensus 39 ~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~ 118 (460)
T PRK11462 39 IFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTL 118 (460)
T ss_pred hhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHH
Confidence 459999999999999999999999999999996 6875 5556677788887777655543 4456667777
Q ss_pred hhhhhhcccchhhhHHHhcCC-CCcchhHHhHHHHHHHHHHHHHHHHHhhccc-----cCCCcchHHHHhhhHHHHHHHH
Q 035548 142 LGIGVGFGNQAVPLFISEIAP-PKYRGGLNICFQLLITVGILAANLINYGTSR-----IHPYGWRISLGGAAVPALFLLL 215 (518)
Q Consensus 142 ~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~-----~~~~~wr~~f~~~~~~~~~~~~ 215 (518)
..++.......-.++..|..+ ++||++..++...+..+|..+++.+...+.. ....+|+....+.+++.+++..
T Consensus 119 ~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~ 198 (460)
T PRK11462 119 LTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLA 198 (460)
T ss_pred HHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 888889899999999999987 7789999999999999888777666432211 1124688877777777666544
Q ss_pred Hhh-cccCChhhHHhcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHh
Q 035548 216 GSC-IIVETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQL 294 (518)
Q Consensus 216 ~~~-~~~e~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (518)
..+ ..+|.++. +. ++.+.+...+..++++..+......++.....
T Consensus 199 i~~~~~kE~~~~-----~~----------------------------~~~~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~- 244 (460)
T PRK11462 199 FCFFTTKERVEA-----PP----------------------------TTTSMREDLRDIWQNDQWRIVGLLTIFNILAV- 244 (460)
T ss_pred HHHhcceeccCC-----Cc----------------------------cCCCHHHHHHHHhCChHHHHHHHHHHHHHHHH-
Confidence 333 34443210 00 00000112233333333332222222222221
Q ss_pred hchhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccC
Q 035548 295 TGINVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTT 374 (518)
Q Consensus 295 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (518)
........++.+...-+....+.+.....++.+++.++++++.||+++|+....+..+..+..+++.+.
T Consensus 245 ---~~~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~-------- 313 (460)
T PRK11462 245 ---CVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFV-------- 313 (460)
T ss_pred ---HHHHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh--------
Confidence 222222222333222123334556677788889999999999999999988765444333322222211
Q ss_pred CCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCC-------hhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccc
Q 035548 375 NTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYP-------LETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMR 447 (518)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (518)
+...........++.+.+. ....++.+.+..|..+ .+..|..++.......++..+++.+.|.+++..|
T Consensus 314 ---~~~~~~~~~~~~~l~g~~~-~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~G 389 (460)
T PRK11462 314 ---PMQASITMFVFIFVIGVLH-QLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGG 389 (460)
T ss_pred ---chhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 2222222222223333332 2223344555666655 2233444566668889999999999999887654
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.2e-20 Score=158.36 Aligned_cols=336 Identities=13% Similarity=0.056 Sum_probs=209.8
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhhh-hccHHHHHHHHHHHHHHHHHHHh---hccHHHHHHHHHHhhhhh
Q 035548 71 DNYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRK-FGRKPTIQAASVFFLIGAILNCL---AQNLGMLIAGRLSLGIGV 146 (518)
Q Consensus 71 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr-~Grr~~l~~~~~l~~~~~~~~~~---~~~~~~l~~~r~l~G~~~ 146 (518)
+.+.+++.++..++.++|.....+-++++|++.|| +|-|..-++-++...++.++++. .+.+|.++.+||+.|+|.
T Consensus 71 k~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGg 150 (459)
T KOG4686|consen 71 KLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGG 150 (459)
T ss_pred hcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCc
Confidence 45558888999999999999999999999999996 67777666666666677766654 689999999999999999
Q ss_pred hcccchhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhh---cccCC
Q 035548 147 GFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSC---IIVET 223 (518)
Q Consensus 147 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~---~~~e~ 223 (518)
-...++-++|..-|+..|+.+.++|+.....-+|..+-..+...+.... .-++-...-..+.+.+.+ ....+
T Consensus 151 ESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~-----~~~~~~~ghT~LG~~l~~~~~tc~~s 225 (459)
T KOG4686|consen 151 ESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTM-----GRMFPGVGHTLLGLWLCFEVKTCKQS 225 (459)
T ss_pred hhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHH-----HHhcccchHHHHHHHHHHHHHHHHHH
Confidence 9899999999999999999999999999888888766554433332210 000000000000000000 00000
Q ss_pred hhhHHhcC-ChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHH
Q 035548 224 PASLIERG-KQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMF 302 (518)
Q Consensus 224 p~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (518)
-.-....+ .++.|++.+. .++....+..+..+.. ...++++....+...... ....+..
T Consensus 226 lical~lg~~D~rAerilh-----------------~e~g~~Ge~pkLtdv~--~f~ppfw~~~iicv~yyv-a~fPFi~ 285 (459)
T KOG4686|consen 226 LICALSLGLSDDRAERILH-----------------LEEGFLGEEPKLTDVN--TFYPPFWVLVIICVLYYV-AWFPFIT 285 (459)
T ss_pred HHHHHHhhhhhhHHHHHHh-----------------hhcCcccCCccccccc--ccCccHHHHHHHHHHHHH-HHHHHhh
Confidence 00000000 0011111111 1111100111111211 122233333333322222 2233444
Q ss_pred hHHHHH-HHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHH-HHHHHHHHHhcccCCCCCCc
Q 035548 303 YAPVLF-QTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQ-CAIGVILKMFLLTTNTMPTV 380 (518)
Q Consensus 303 ~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 380 (518)
..|.++ +++|+|+..++.+.+.......+.+++.|.++||+|++...+.+..+..+.. ..+.+ ...
T Consensus 286 lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F------------t~l 353 (459)
T KOG4686|consen 286 LGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF------------TFL 353 (459)
T ss_pred hhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh------------hhc
Confidence 455555 5679999999999999999999999999999999999977765554444332 22222 122
Q ss_pred hhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccc
Q 035548 381 PAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMR 447 (518)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (518)
+++. .+.+.+..+.... ...|..++.+.|.++.|+++|+.+.+.++|-.+.|.+.|.+.|..+
T Consensus 354 sPy~---~m~~lGLsysllA-cslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g 416 (459)
T KOG4686|consen 354 SPYT---SMTFLGLSYSLLA-CSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG 416 (459)
T ss_pred cHHH---HHHHHhhhHHHHH-HHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence 3332 3333333333322 2345667888999999999999999999999999999999999877
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-19 Score=175.51 Aligned_cols=328 Identities=14% Similarity=0.131 Sum_probs=231.7
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHhhHHhhh----hhccHH-HHHHHHHHHHHHHHHHHhh-c-------cHHHHHHHHH
Q 035548 74 CKYDNQYLQLFTSSLYLAAIVACFLASIVCR----KFGRKP-TIQAASVFFLIGAILNCLA-Q-------NLGMLIAGRL 140 (518)
Q Consensus 74 ~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~d----r~Grr~-~l~~~~~l~~~~~~~~~~~-~-------~~~~l~~~r~ 140 (518)
+++++..+|++..+..+..++..|+.|.++| |+|||| .+++|.++.+++.+++... + ...++.+.-+
T Consensus 32 ~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~ 111 (428)
T PF13347_consen 32 LGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYI 111 (428)
T ss_pred cCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHH
Confidence 4899999999999999999999999999999 899755 5557888888888777765 4 2345677778
Q ss_pred HhhhhhhcccchhhhHHHhcCC-CCcchhHHhHHHHHHHHHHHHHHHHHhhccccCC-----CcchHHHHhhhHHHHHHH
Q 035548 141 SLGIGVGFGNQAVPLFISEIAP-PKYRGGLNICFQLLITVGILAANLINYGTSRIHP-----YGWRISLGGAAVPALFLL 214 (518)
Q Consensus 141 l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~-----~~wr~~f~~~~~~~~~~~ 214 (518)
+..++.........++..|..+ +++|.+..+....+..+|.++...+...+..... .+|++..++.+++.++..
T Consensus 112 l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~ 191 (428)
T PF13347_consen 112 LFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFF 191 (428)
T ss_pred HHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999997 5689999999999988888766655444332111 279999988888877755
Q ss_pred HHh-hcccCChhhHHhcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHH
Q 035548 215 LGS-CIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQ 293 (518)
Q Consensus 215 ~~~-~~~~e~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (518)
+.. +..+|+++. . ++.+++.+.+..+++.++++.....+....+.
T Consensus 192 ~i~~~~~ke~~~~------~------------------------~~~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~---- 237 (428)
T PF13347_consen 192 LITFFFVKERSVE------V------------------------TEQEKKISLRDSLRSLFRNRPFRILLLAFFLQ---- 237 (428)
T ss_pred hhhhheeeecccc------c------------------------cccccccccccchhhhcccchHHHHHHHHHHH----
Confidence 544 445551110 0 00011111133344555544433333333332
Q ss_pred hhchhHHHHhHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcc
Q 035548 294 LTGINVVMFYAPVLFQTM-GYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLL 372 (518)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (518)
...........+++.+.. |.+ ...+.......+..+++.++.++++||+|+|+.+..+..+.+++.+.+.+..
T Consensus 238 ~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~----- 311 (428)
T PF13347_consen 238 WLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLG----- 311 (428)
T ss_pred HhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHH-----
Confidence 233344444556666543 544 5566777788899999999999999999999999999988888887776642
Q ss_pred cCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCCh-------hhhhhHHHHHHHHHHHHHHHHHHHhHHHHhc
Q 035548 373 TTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPL-------ETRNAGYFFAVSTNMVFTFVIAQAFLSMLCK 445 (518)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 445 (518)
..+.+..++...+.+.+.+... ...+++.+|..+. +..|..+|+.+....++..+++.+.+.+.+.
T Consensus 312 ------~~~~~~~~i~~~l~gi~~~~~~-~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~ 384 (428)
T PF13347_consen 312 ------PGSPWLVLILFILAGIGYGAFF-VIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLAL 384 (428)
T ss_pred ------hhhHHHHHHHHHHhHhhhcccc-cccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 2344555555555555555443 5667888888774 3457889999999999999999999998877
Q ss_pred cch
Q 035548 446 MRW 448 (518)
Q Consensus 446 ~~~ 448 (518)
.|+
T Consensus 385 ~Gy 387 (428)
T PF13347_consen 385 VGY 387 (428)
T ss_pred hCc
Confidence 653
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-18 Score=161.94 Aligned_cols=330 Identities=14% Similarity=0.119 Sum_probs=232.4
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhhh----hcc-HHHHHHHHHHHHHHHHHHHhhcc------HHHHHHHH
Q 035548 71 DNYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRK----FGR-KPTIQAASVFFLIGAILNCLAQN------LGMLIAGR 139 (518)
Q Consensus 71 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr----~Gr-r~~l~~~~~l~~~~~~~~~~~~~------~~~l~~~r 139 (518)
.+.+|++...+|.+..+.-+--++..|+.|.+.|| +|| |+.++++.+..++.+.++..+++ ....++.-
T Consensus 40 Tdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY 119 (467)
T COG2211 40 TDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTY 119 (467)
T ss_pred hcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHH
Confidence 44459999999999999999999999999999995 776 66777888999999988888763 45677778
Q ss_pred HHhhhhhhcccchhhhHHHhcCC-CCcchhHHhHHHHHHHHHHHHHHHHH-----hhccccCCCcchHHHHhhhHHHHHH
Q 035548 140 LSLGIGVGFGNQAVPLFISEIAP-PKYRGGLNICFQLLITVGILAANLIN-----YGTSRIHPYGWRISLGGAAVPALFL 213 (518)
Q Consensus 140 ~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~i~~~i~-----~~~~~~~~~~wr~~f~~~~~~~~~~ 213 (518)
++.+++.......-.++..|.++ ++||.+..++...+.++|.++...+. .........||+..-++.++++++.
T Consensus 120 ~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~ 199 (467)
T COG2211 120 MLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVIL 199 (467)
T ss_pred HHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHH
Confidence 89999999999999999999885 67799999999999888866554432 2222222468998888888887776
Q ss_pred HHHhhc-ccCChhhHHhcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchh----hhcccCChhHHHHHHHH
Q 035548 214 LLGSCI-IVETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYR----SLMKKSSRPQLICGTFI 288 (518)
Q Consensus 214 ~~~~~~-~~e~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 288 (518)
.+..++ ..|.+.. ....+...+.+++ .+++++... . .++
T Consensus 200 ~l~~~~~v~ER~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~Nrp~~---~-~l~ 243 (467)
T COG2211 200 LLFCFFNVKERVVE--------------------------------TQPTKTGVKLKLKDSFLLIFKNRPLL---L-LLL 243 (467)
T ss_pred HHHHHHHhhcccCc--------------------------------cccCcccccccHHHHHHHHHccchHH---H-HHH
Confidence 555444 5554310 0000001122333 233333322 2 222
Q ss_pred HHHHHhhchhHHHHhHHHHHHH-cCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHH
Q 035548 289 HMLQQLTGINVVMFYAPVLFQT-MGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVIL 367 (518)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (518)
..++.+.+.........++.+. +|.+.............+.+++.++..++.+|+|+|+++.++.++..++.+++.+.
T Consensus 244 ~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~- 322 (467)
T COG2211 244 MNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFT- 322 (467)
T ss_pred HHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhh-
Confidence 3333334445555555555543 46666777777777788888889999999999999999999988888888877664
Q ss_pred HHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCCh-------hhhhhHHHHHHHHHHHHHHHHHHHhH
Q 035548 368 KMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPL-------ETRNAGYFFAVSTNMVFTFVIAQAFL 440 (518)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~r~~~~g~~~~~~~~~~~~~~~~~~ 440 (518)
+.++....++..++...+.+. ..++.|++.+|.... +..|..+|...++.-+|.+++..+.|
T Consensus 323 ----------~~~~~~l~~~~~~i~~~g~~~-~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g 391 (467)
T COG2211 323 ----------PAGSVVLIVVALIIAGVGTGI-ANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPG 391 (467)
T ss_pred ----------cCcchHHHHHHHHHHHHHhhc-cccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555555544 346888888887643 34567788888999999999999999
Q ss_pred HHHhccch
Q 035548 441 SMLCKMRW 448 (518)
Q Consensus 441 ~~~~~~~~ 448 (518)
+.++..|+
T Consensus 392 ~~L~~~Gy 399 (467)
T COG2211 392 WILGAIGY 399 (467)
T ss_pred HHHHHcCC
Confidence 99987764
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.7e-19 Score=172.79 Aligned_cols=326 Identities=11% Similarity=0.036 Sum_probs=194.8
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHhhHHhhhhh----ccHHHH-HHHHHHHHHHHHHHHhhc-------cHHHHHHHHHH
Q 035548 74 CKYDNQYLQLFTSSLYLAAIVACFLASIVCRKF----GRKPTI-QAASVFFLIGAILNCLAQ-------NLGMLIAGRLS 141 (518)
Q Consensus 74 ~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~----Grr~~l-~~~~~l~~~~~~~~~~~~-------~~~~l~~~r~l 141 (518)
+|++..++|.+.++..+..++..++.|+++||. ||||.. ..+.+...+..++....+ ..+.+++.-++
T Consensus 39 ~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (448)
T PRK09848 39 AGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMG 118 (448)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHH
Confidence 489999999999999999999999999999996 777644 556555554444432111 22334555677
Q ss_pred hhhhhhcccchhhhHHHhcCCC-CcchhHHhHHHHH-----HHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHH-
Q 035548 142 LGIGVGFGNQAVPLFISEIAPP-KYRGGLNICFQLL-----ITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLL- 214 (518)
Q Consensus 142 ~G~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~-----~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~- 214 (518)
.+++.+...+...++..+..++ ++|.+..++...+ ..+|..++|.++.........+|.....+.++++++..
T Consensus 119 ~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v~~~~~~~ 198 (448)
T PRK09848 119 LGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIAGMVLYF 198 (448)
T ss_pred HHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 8888888888888888877754 5688876665543 33556667766543211111122222223333333322
Q ss_pred HHhhcccCChhhHHhcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHh
Q 035548 215 LGSCIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQL 294 (518)
Q Consensus 215 ~~~~~~~e~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (518)
+.....+|+++. +. ++...+..++++++++.........++ ..
T Consensus 199 ~~~~~~~e~~~~---~~------------------------------~~~~~~~~~~~l~~n~~f~~~~~~~~~----~~ 241 (448)
T PRK09848 199 ICFKSTRENVVR---IV------------------------------AQPSLKISLQTLKRNRPLFMLCIGALC----VL 241 (448)
T ss_pred HHHcCcEeccCC---Cc------------------------------cCCCHHHHHHHHhCCchHHHHHHHHHH----HH
Confidence 223334553210 00 000001123445544443322222222 22
Q ss_pred hchhHHHHhHHHHHHH-cCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhccc
Q 035548 295 TGINVVMFYAPVLFQT-MGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLT 373 (518)
Q Consensus 295 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (518)
..........++++++ +|.+....++......++.+++.++.+++.||+++|+.+.++..+..++.+.+.+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~------- 314 (448)
T PRK09848 242 ISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWV------- 314 (448)
T ss_pred HHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc-------
Confidence 2333444456666654 47666555555555567778889999999999999999988887777666555431
Q ss_pred CCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChh-------hhhhHHHHHHHHHHHHHHHHHHHhHHHHhcc
Q 035548 374 TNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLE-------TRNAGYFFAVSTNMVFTFVIAQAFLSMLCKM 446 (518)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 446 (518)
+..+.+.......+.+.+.+... +..+++..|..|.+ .+|...|+.+....++..+++.+.+.+++..
T Consensus 315 ----~~~~~~~~~~~~~l~g~G~~~~~-~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~ 389 (448)
T PRK09848 315 ----SVWSLPVALVALAIASIGQGVTM-TVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLS 389 (448)
T ss_pred ----CchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 22233333333334444433333 34456667776643 4588899999999999999999999988765
Q ss_pred ch
Q 035548 447 RW 448 (518)
Q Consensus 447 ~~ 448 (518)
|+
T Consensus 390 G~ 391 (448)
T PRK09848 390 GY 391 (448)
T ss_pred CC
Confidence 53
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.3e-18 Score=163.18 Aligned_cols=360 Identities=13% Similarity=0.039 Sum_probs=202.8
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHhhHHhhhhh-ccHHHHHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHhhhhhhcccc
Q 035548 74 CKYDNQYLQLFTSSLYLAAIVACFLASIVCRKF-GRKPTIQAASVFFLIGAILNCLAQ-NLGMLIAGRLSLGIGVGFGNQ 151 (518)
Q Consensus 74 ~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~-Grr~~l~~~~~l~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~ 151 (518)
+|+++.+.+.+.+.+.....++.+++|+++||+ ||||+++++.++..++.++++..+ +...+.++..+.++|.|...+
T Consensus 40 lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~ 119 (493)
T PRK15462 40 LKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKS 119 (493)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccc
Confidence 489999999999999999999999999999999 999999999999999987776543 223344455555566777778
Q ss_pred hhhhHHHhcCCCC--cchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccCChhhH-H
Q 035548 152 AVPLFISEIAPPK--YRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASL-I 228 (518)
Q Consensus 152 ~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~-~ 228 (518)
...++++|.+|++ +|..++++.+.+.++|..++|.+++.+.. ..|||+.|.+.++..++.++..++..+..... .
T Consensus 120 ~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~--~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~ 197 (493)
T PRK15462 120 NVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQE--EYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRG 197 (493)
T ss_pred cHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHh--hhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCC
Confidence 8889999999876 68899999999999999999999877643 35899999887765444443333221110000 0
Q ss_pred -hcCChhHHHHHHHhhh-------------CCccHHHHHHHHHHH--H-HhhcccccchhhhcccCChhHHHHHHH--HH
Q 035548 229 -ERGKQEQGLYTLRKIR-------------GVKDVEKEYAEICRA--T-EISNLIKHPYRSLMKKSSRPQLICGTF--IH 289 (518)
Q Consensus 229 -~~~~~~~a~~~~~~~~-------------~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 289 (518)
++.+.++ ++...... ......++....... . ..-.---.-.+...+...++|+..... +.
T Consensus 198 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~r~~~~~~l~~~ 276 (493)
T PRK15462 198 VNKKVLRA-TNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRKAENQKQRKELGLIVTLTFF 276 (493)
T ss_pred CCCCCchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhhHHHHHHHHHH
Confidence 0000000 00000000 000000000000000 0 000000000000001111222222111 11
Q ss_pred HHHHhhchhHHHHhHHHHHHH------cCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCC--h-----HHHHHhHHHH
Q 035548 290 MLQQLTGINVVMFYAPVLFQT------MGYGSNASLLSAVISGTINVASTLVAIVLVDKAGR--K-----ILLVQAAIQM 356 (518)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~--~-----~~~~~~~~~~ 356 (518)
....+..+.....-...+.++ .|+. -...+..++..+..++.+++..++-.|..| | .-+.+++++.
T Consensus 277 ~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~-ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~ 355 (493)
T PRK15462 277 SMLFWAFAQQGGSSISLYIDRFVNRDMFGYT-VPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLM 355 (493)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhccchhccee-eCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Confidence 111122222222222333332 1332 224566677777777777777766555522 2 1255677777
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHH-HHHHHHH
Q 035548 357 IICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTN-MVFTFVI 435 (518)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~-~~~~~~~ 435 (518)
+++.+.+.+..... +.....+.++.+... ++.........|+..++++++.|++.+|..+|+..... .++..++
T Consensus 356 g~~f~~l~~~~~~~----~~~~~~s~~wl~~~~-~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~ 430 (493)
T PRK15462 356 SAGFCILTLSARWS----AMYGHSSLPLMVLGL-AVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLA 430 (493)
T ss_pred HHHHHHHHHHHhhc----CCCCCcCHHHHHHHH-HHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776665433211 111113334433333 33344456677898999999999999999999986643 5666666
Q ss_pred HHHhHHH
Q 035548 436 AQAFLSM 442 (518)
Q Consensus 436 ~~~~~~~ 442 (518)
..+.+..
T Consensus 431 g~~~~~~ 437 (493)
T PRK15462 431 GVIADQT 437 (493)
T ss_pred HHHHHHh
Confidence 6665544
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.3e-18 Score=158.18 Aligned_cols=272 Identities=9% Similarity=-0.001 Sum_probs=183.7
Q ss_pred hhccHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccC------------
Q 035548 128 LAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIH------------ 195 (518)
Q Consensus 128 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~------------ 195 (518)
...+++.++++-++.|.|.+...+..+.++++..+++++.+.+++.+.++++|..++|+++..+....
T Consensus 6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~ 85 (310)
T TIGR01272 6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN 85 (310)
T ss_pred HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence 45789999999999999999999999999999999999999999999999999999999988665321
Q ss_pred --CCcchHHHHhhhHHHHHHHHHhhcc--cCChhhHHhcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchh
Q 035548 196 --PYGWRISLGGAAVPALFLLLGSCII--VETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYR 271 (518)
Q Consensus 196 --~~~wr~~f~~~~~~~~~~~~~~~~~--~e~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (518)
..+||++|++.+...++..+.+.+. ||..+ ++.++ ..+ + +....+
T Consensus 86 ~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~-----~~~~~-----------------------~~~-~--~~~~~~ 134 (310)
T TIGR01272 86 AEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE-----ADVAR-----------------------VSS-G--DTTQKT 134 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc-----ccccc-----------------------ccc-c--cccchh
Confidence 1379999987766655544444333 44211 00000 000 0 000011
Q ss_pred hhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHHH---cCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHH
Q 035548 272 SLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQT---MGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKIL 348 (518)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~ 348 (518)
+.++ ++..++ ..+..+...........|.+.|+++ +|+++.+.+........+.++|+++.+++.||+++|+.
T Consensus 135 ~~~~---~~~~~l-~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~ 210 (310)
T TIGR01272 135 SAFQ---FTHLVL-GALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRY 210 (310)
T ss_pred hHHh---hHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 1221 222233 3344444444455677788888864 48999999999999999999999999999999999998
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHH
Q 035548 349 LVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTN 428 (518)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~ 428 (518)
+.++..+..++.+++.. .+. ........+.+.+.+..+ |...+...+..|++. +++.++. ..+
T Consensus 211 l~~~~~l~~~~~~l~~~------------~~~--~~~~~~~~l~g~~~s~i~-P~~~s~a~~~~~~~~-~~asai~-~~~ 273 (310)
T TIGR01272 211 LAFNAFLAVLLSIGAAL------------THG--YVAMWFVLALGLFNSIMF-PTIFSLALNALGRHT-SQGSGIL-CLA 273 (310)
T ss_pred HHHHHHHHHHHHHHHHH------------cCC--HHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhh-hhhHHHH-HHH
Confidence 87776666655433322 111 112223333444433333 455566667777653 5666764 677
Q ss_pred HHHHHHHHHHhHHHHhccchhhH
Q 035548 429 MVFTFVIAQAFLSMLCKMRWGIF 451 (518)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~ 451 (518)
.+|+.+.|.+.|.+.|..+....
T Consensus 274 ~~Gg~i~P~l~G~lad~~g~~~a 296 (310)
T TIGR01272 274 IVGGAIVPLLQGSLADCLGIQLA 296 (310)
T ss_pred HhcchHHHHHHHHHHHhccchHH
Confidence 89999999999999998875433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.6e-19 Score=164.17 Aligned_cols=352 Identities=14% Similarity=0.109 Sum_probs=214.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHH--HHHHHHH-Hh----hccHH-HHHHHHHHhhhhh
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFF--LIGAILN-CL----AQNLG-MLIAGRLSLGIGV 146 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~--~~~~~~~-~~----~~~~~-~l~~~r~l~G~~~ 146 (518)
|+|.+++|.+.++..+...+.+|+.|.++||.|.||-++....+. ..+.... .+ ..|.+ ..+++-+..|+..
T Consensus 39 GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f 118 (412)
T PF01306_consen 39 GLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVF 118 (412)
T ss_dssp ---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999666544333222 2222221 22 23332 3444455566666
Q ss_pred hcccchhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcc-cCChh
Q 035548 147 GFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCII-VETPA 225 (518)
Q Consensus 147 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e~p~ 225 (518)
....|+..+++.++... .+.=.|-.-...++|.+++..+++.+... +-+..||+....+++..++.++. |+.++
T Consensus 119 ~~~~~~~Ea~~er~sr~--~~feYG~~R~wGSig~ai~s~~~G~L~~i---~p~~~fwi~s~~~~il~lll~~~~~~~~~ 193 (412)
T PF01306_consen 119 NAGVPLSEAYAERVSRR--NGFEYGRARMWGSIGFAIASLLAGILFNI---NPNIIFWIASAAAIILLLLLLLLKPDVPP 193 (412)
T ss_dssp TTHHHHHHHHHHHHHHH--HSS-HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHSS---SSS
T ss_pred cccchHHHHHHHHHHHH--hcCCcchHHHHhhHHHHHHHHHhheeeee---CccHHHHHHHHHHHHHHHHHHHcCCcCch
Confidence 66777777776665432 23445555666777777777777666543 45678887776666655444443 33332
Q ss_pred hHHhcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHH
Q 035548 226 SLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAP 305 (518)
Q Consensus 226 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (518)
.....+. +..++++.+.++..+..+.++.+....+.... .+.+..+....+
T Consensus 194 ~~~~~~~----------------------------~~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~-~~~Y~vfdqqf~ 244 (412)
T PF01306_consen 194 QAEVADA----------------------------LGAKKDKVSLKDVLSLFKMRNFWFFVLFVIGV-AAIYDVFDQQFP 244 (412)
T ss_dssp SS-SSTT----------------------------SSS------HHHHHHHTTSHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred hhhhhcc----------------------------cccCCCCCcHHHHHHHhcchhHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 1100000 00011122334444433444443333332222 122334333344
Q ss_pred HHHHHc----CCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCch
Q 035548 306 VLFQTM----GYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVP 381 (518)
Q Consensus 306 ~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (518)
.++..+ +.+....|.+.+...+..++...+..++.+|+|.|+.++++..++.+=..+.++. .+
T Consensus 245 ~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~-------------~~ 311 (412)
T PF01306_consen 245 IYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA-------------TN 311 (412)
T ss_dssp HHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT---------------S
T ss_pred HHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh-------------cc
Confidence 444433 3444567888889999999999999999999999999999998888887777653 34
Q ss_pred hHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHH-HHHHHHHHHHHHHHhHHHHhccchh-hHHHHHHHHH
Q 035548 382 AKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFA-VSTNMVFTFVIAQAFLSMLCKMRWG-IFFFFTGWLL 459 (518)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 459 (518)
.+.....=.+.+.-+.....+ ..-++.+.+|++..++.+.+. +....++.++.+.+.|.++|+.|+. .+++++.+.+
T Consensus 312 ~~~i~~~klLH~~e~~l~lva-~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~ 390 (412)
T PF01306_consen 312 PWVISLIKLLHALEFPLLLVA-AFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVL 390 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHH
Confidence 445555555555554444332 235789999999999998885 5677899999999999999999954 6777777766
Q ss_pred HHHHHHHhcccCCCC
Q 035548 460 ISLIFSATMLPETKG 474 (518)
Q Consensus 460 ~~~~~~~~~~~~~~~ 474 (518)
...++..+.+++.++
T Consensus 391 ~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 391 PFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHHHHHHS--SSS
T ss_pred HHHHHheeeecCCCc
Confidence 666666666654433
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.5e-17 Score=146.60 Aligned_cols=353 Identities=12% Similarity=0.043 Sum_probs=231.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHH-HHHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHhhhhhhcccch
Q 035548 77 DNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKP-TIQAASVFFLIGAILNCLAQN---LGMLIAGRLSLGIGVGFGNQA 152 (518)
Q Consensus 77 s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~-~l~~~~~l~~~~~~~~~~~~~---~~~l~~~r~l~G~~~g~~~~~ 152 (518)
+.+..+...++..+..++.+|+.|.++|+.|+|| .+-....+..++.++..++++ ++..++.-.+..++.....+.
T Consensus 56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf 135 (438)
T COG2270 56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF 135 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence 4577788999999999999999999999999655 445556666666677777655 445555678888999999999
Q ss_pred hhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccc----------------cCCCcchHHHHhhhHHHHHH-HH
Q 035548 153 VPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSR----------------IHPYGWRISLGGAAVPALFL-LL 215 (518)
Q Consensus 153 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~----------------~~~~~wr~~f~~~~~~~~~~-~~ 215 (518)
..+++.+..++++-++..+.-.....+|..+.-++...... .+...=|..+.+.++..++. +.
T Consensus 136 yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iP 215 (438)
T COG2270 136 YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALP 215 (438)
T ss_pred hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhH
Confidence 99999999999888888777766667776666555311110 13345788888888877764 44
Q ss_pred HhhcccCChhhHHhcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhh
Q 035548 216 GSCIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLT 295 (518)
Q Consensus 216 ~~~~~~e~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (518)
+.+..++.++-. ....++ ..... ++-++++++.++.+. +..+.+..+...-
T Consensus 216 m~~~v~~~~~~~---~~~~~~------------l~~g~----------k~L~~t~k~i~~~~~----i~~FLiA~~~~~D 266 (438)
T COG2270 216 MILNVHDAEKIS---SPPPTA------------LRNGF----------KELKSTFKEIRGRKN----LVLFLIARFFYID 266 (438)
T ss_pred HHhccccccccc---ccchHH------------HHHHH----------HHHHHHHHHHhcccc----hHHHHHHHHHHHh
Confidence 555555544200 000000 00000 111233444443332 2223333333334
Q ss_pred chhHHHHhHHHHHH-HcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccC
Q 035548 296 GINVVMFYAPVLFQ-TMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTT 374 (518)
Q Consensus 296 ~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (518)
+.+.+......+-. ++|++..+..++.....+..++|+++.|++.||+|.|+++..+.++..+..+...+.
T Consensus 267 Gv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~-------- 338 (438)
T COG2270 267 GVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFL-------- 338 (438)
T ss_pred hHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHc--------
Confidence 55666666666665 789999999999999999999999999999999999988887777666655544432
Q ss_pred CCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchh-hHHH
Q 035548 375 NTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWG-IFFF 453 (518)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 453 (518)
......+ ....+.+...+ ...+..-++..+..|+++-++.+|+++..+...++++|.+.+.+.+.++.. .-..
T Consensus 339 ---~~~~~f~--i~gll~g~s~G-~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~ 412 (438)
T COG2270 339 ---EGELDFW--ILGLLVGTSLG-GAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVL 412 (438)
T ss_pred ---cccHHHH--HHHHHHHHhcc-hHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHH
Confidence 1111111 12122222222 223455678899999999999999999999999999999999999988743 2222
Q ss_pred HHHHHHHHHHHHHhcccCC
Q 035548 454 FTGWLLISLIFSATMLPET 472 (518)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~ 472 (518)
...+.+...++.+...|..
T Consensus 413 ~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 413 SIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHhhHhhEEeecCC
Confidence 2333333344444444443
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.6e-18 Score=162.31 Aligned_cols=407 Identities=12% Similarity=0.109 Sum_probs=236.2
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHH
Q 035548 11 NGKDFPAKLTGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYL 90 (518)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l 90 (518)
.+++++++.+||..++..+.. ++.+...+++.+ .+-++.++. |.+.+.+..|++.++..+
T Consensus 23 ~~~~~~~~t~wrsi~l~~~~s---fl~~v~~sI~~~--s~wpYl~~l---------------D~~A~~~ffG~viaa~sl 82 (488)
T KOG2325|consen 23 LSPLDERKTNWRSIYLALLNS---FLVAVQFSIYLT--SMWPYLQKL---------------DPTATATFFGLVIAASSL 82 (488)
T ss_pred cccccccCCchHhHHHHHHHH---HHHhhhheEEEe--ecchhhhhc---------------CCCCCcchhhHHHHHHHH
Confidence 344455556666555554444 566666666543 234555443 236788899999999999
Q ss_pred HHHHHHHhhHHhhhhhcc-HHHHHHHHHHHHHHHHHH-Hhh---c-cHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCC
Q 035548 91 AAIVACFLASIVCRKFGR-KPTIQAASVFFLIGAILN-CLA---Q-NLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPK 164 (518)
Q Consensus 91 ~~~i~~~~~G~l~dr~Gr-r~~l~~~~~l~~~~~~~~-~~~---~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~ 164 (518)
+.+++++.+|++..|.|. |+.++.|.++..+++++. ++. + ..+.++++|++.|+|.| ......+|+++....+
T Consensus 83 g~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~ 161 (488)
T KOG2325|consen 83 GHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVE 161 (488)
T ss_pred HHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCcc
Confidence 999999999999999996 778899999999999887 332 3 57889999999999888 6678899999999999
Q ss_pred cchhHHhHHHHHHHHHHHHHHHHHhhccccCCCc-----------chHHHHhhhHHHHHHHH-HhhcccCChhhHHhcCC
Q 035548 165 YRGGLNICFQLLITVGILAANLINYGTSRIHPYG-----------WRISLGGAAVPALFLLL-GSCIIVETPASLIERGK 232 (518)
Q Consensus 165 ~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~-----------wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~ 232 (518)
+|.++++....+..+|.++||.++..+.....-| +..+-|+.+++.++.++ +.+++.|.++....++.
T Consensus 162 dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~ 241 (488)
T KOG2325|consen 162 DRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKK 241 (488)
T ss_pred chHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCcccccc
Confidence 9999999999999999999998876554433222 23455777777777544 44556665532111100
Q ss_pred hhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHH-HHHhhchhHHHHhHHHHHHHc
Q 035548 233 QEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHM-LQQLTGINVVMFYAPVLFQTM 311 (518)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 311 (518)
+++ + +. +....+....+..+...+.+++.. ...+.....-....+.....+
T Consensus 242 ~~~------------------~---~~-------~~~~~~~~~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y 293 (488)
T KOG2325|consen 242 RSV------------------E---EE-------KSDIEKVKKPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMY 293 (488)
T ss_pred ccc------------------h---hh-------ccchhhhccCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHh
Confidence 000 0 00 000001111122222233333333 333222222344455555666
Q ss_pred CCCChHHHHH----HHHHHHHHHHHhhhhhhhh-hccCChHHHHHhHHHHHHHHHHHHHHHHHhc-----cc---CCCCC
Q 035548 312 GYGSNASLLS----AVISGTINVASTLVAIVLV-DKAGRKILLVQAAIQMIICQCAIGVILKMFL-----LT---TNTMP 378 (518)
Q Consensus 312 g~~~~~~~~~----~~~~~~~~~~~~~~~g~l~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~~~~ 378 (518)
+++.+++-.. .+..++......+...... .++.+|+.+..+.+.......+......+.. .. .+...
T Consensus 294 ~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~ 373 (488)
T KOG2325|consen 294 GWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDF 373 (488)
T ss_pred ccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHhhheeeeeccccccccccccccccCcCc
Confidence 7765554333 3333333333333333332 2334455554443333333322221111111 00 00000
Q ss_pred Cc---------hhHHHHHHHHH--HHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccc
Q 035548 379 TV---------PAKVVVILVCV--FVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMR 447 (518)
Q Consensus 379 ~~---------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (518)
.. .+...+..... ++..+-..- ....++-+|...++.+++..|+....+..+..++|.+........|
T Consensus 374 ~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~-~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g 452 (488)
T KOG2325|consen 374 EEYSWCDTTTAVPLILYLISFIVVFGIAFPFIS-TALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSG 452 (488)
T ss_pred ccchhhccCcccChhhheeehhheecccccccc-chHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcC
Confidence 00 01111111111 121111111 1223455888899999999999999999999999999999998888
Q ss_pred hhhHHHHHHHHHHHHHHHHh
Q 035548 448 WGIFFFFTGWLLISLIFSAT 467 (518)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~ 467 (518)
....+.+..+.++.....+.
T Consensus 453 ~~~v~~~~~~~~l~~~~l~~ 472 (488)
T KOG2325|consen 453 PRPVWIILLCLLLVVAALWI 472 (488)
T ss_pred ccHHHHHHHHHHHHHHHHHH
Confidence 77777766665555544443
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.3e-15 Score=140.90 Aligned_cols=359 Identities=16% Similarity=0.072 Sum_probs=217.5
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHhhHHhhhhh-ccHHHHHHHHHHHHHHHHHHHhhc--cHHHHHHHHHHhhhhhhccc
Q 035548 74 CKYDNQYLQLFTSSLYLAAIVACFLASIVCRKF-GRKPTIQAASVFFLIGAILNCLAQ--NLGMLIAGRLSLGIGVGFGN 150 (518)
Q Consensus 74 ~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~-Grr~~l~~~~~l~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~ 150 (518)
+|+|+++..-+.+.|..-.-+...++|+++||+ |+|+.+.+|.++..+|.++.+.++ +...+.++-.+.++|.|..=
T Consensus 56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K 135 (498)
T COG3104 56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFK 135 (498)
T ss_pred CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccccc
Confidence 789999999999999998999999999999995 999999999999999999999884 78899999999999999999
Q ss_pred chhhhHHHhcCCCCc--chhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccCC-----
Q 035548 151 QAVPLFISEIAPPKY--RGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVET----- 223 (518)
Q Consensus 151 ~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~----- 223 (518)
+...++++|.+|+++ |-..+++++++.++|.+++|++.+.+.. ..||+..|.+.++-..+.++..+..+..
T Consensus 136 ~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~--~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~ 213 (498)
T COG3104 136 PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAI--NYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIG 213 (498)
T ss_pred ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHHHHHccchhcCCC
Confidence 999999999998764 6778999999999999999999776654 3689999998888777766655554321
Q ss_pred ----hhhHHhcCChhHHHHHHHhhhCC---cc-HHHHHHHHH------HH----HHhhcccccchhhhcccCChhHHHHH
Q 035548 224 ----PASLIERGKQEQGLYTLRKIRGV---KD-VEKEYAEIC------RA----TEISNLIKHPYRSLMKKSSRPQLICG 285 (518)
Q Consensus 224 ----p~~~~~~~~~~~a~~~~~~~~~~---~~-~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (518)
|..+..+.............-.. .. ..+...... .. .+.-+.++.. .+..|....-++++.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~er~r~~~~~~Lfl~ 292 (498)
T COG3104 214 GVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVF-DERRRLLAAIPLFLF 292 (498)
T ss_pred CCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccH-HHHHHHHHHHHHHHH
Confidence 11110000000000000000000 00 000000000 00 0000000000 110010111111222
Q ss_pred HHHHHHHHhhchhHHHHhHHHHHHH--cCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCCh-------HHHHHhHHHH
Q 035548 286 TFIHMLQQLTGINVVMFYAPVLFQT--MGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRK-------ILLVQAAIQM 356 (518)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~-------~~~~~~~~~~ 356 (518)
..+.+....-..+.++.|.....++ +|++. ...+.-+...+.-++.+++..++..|.+++ .-+.++..++
T Consensus 293 ~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~v-p~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~ 371 (498)
T COG3104 293 AVIFWALYEQMGSSLNLYADRNVNRQIFGFEV-PPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILA 371 (498)
T ss_pred HHHHHHHHHhccchHHHHHHHhhcccccceec-CHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHH
Confidence 2222222222223333343333322 23322 234556666677777777777776664332 2344555555
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHH
Q 035548 357 IICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIA 436 (518)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~ 436 (518)
+.+.+++....... . +.....+.++.+ ..............|+..+++....|+...+..++........+..++.
T Consensus 372 g~~fl~l~~~~~~~-~--~~~~~~s~~~li-l~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g 447 (498)
T COG3104 372 GLGFLILLLAGIWF-G--GPSGLVSVWWLV-LSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGG 447 (498)
T ss_pred HHHHHHHHHHHHhh-c--CCCCCcCHHHHH-HHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55555554431111 1 001223333333 3344444446666788888899999999999999998888888888888
Q ss_pred HHhH
Q 035548 437 QAFL 440 (518)
Q Consensus 437 ~~~~ 440 (518)
.+.+
T Consensus 448 ~va~ 451 (498)
T COG3104 448 QVAG 451 (498)
T ss_pred eecc
Confidence 7776
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.4e-16 Score=156.19 Aligned_cols=170 Identities=14% Similarity=0.104 Sum_probs=131.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHH---HHhhccHHHHHHHHHHhhhhhhcccc
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAIL---NCLAQNLGMLIAGRLSLGIGVGFGNQ 151 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~---~~~~~~~~~l~~~r~l~G~~~g~~~~ 151 (518)
|.+..+.++..+...++..++.++.|+++||+|||+++..+.++..++.+. ...+++...++++|++.|++.+....
T Consensus 282 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g 361 (490)
T PRK10642 282 HYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTG 361 (490)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 677777788888889999999999999999999999988887654443322 22345677888899999998877777
Q ss_pred hhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccCChhhHHhc-
Q 035548 152 AVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIER- 230 (518)
Q Consensus 152 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~- 230 (518)
....++.|.+|++.|+++.++......++..++|.+.+.+.... .+|+.++++..+++++.++..+++||+|+|+.++
T Consensus 362 ~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~-~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~~~ 440 (490)
T PRK10642 362 VMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVEST-QNLMMPAYYLMVVAVIGLITGVTMKETANRPLKGA 440 (490)
T ss_pred HHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchHHHHHHHHHHHHHHHHHHHhccccCCCCCCc
Confidence 88888999999999999999744444455567777655544322 2578777777777777777777889999998765
Q ss_pred ----CChhHHHHHHHhhhC
Q 035548 231 ----GKQEQGLYTLRKIRG 245 (518)
Q Consensus 231 ----~~~~~a~~~~~~~~~ 245 (518)
++.|||++.+++++.
T Consensus 441 ~~~~~~~~~a~~~l~~~~~ 459 (490)
T PRK10642 441 TPAASDIQEAKEILVEHYD 459 (490)
T ss_pred cccccchhhHHHHhhcccc
Confidence 889999999998873
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.7e-15 Score=146.24 Aligned_cols=300 Identities=12% Similarity=0.120 Sum_probs=205.4
Q ss_pred HHHHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhc
Q 035548 28 IIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFG 107 (518)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~G 107 (518)
.+.++..+.++...+.+...+ ..+.+.| +++.++.|++.+.+-++..+...+..+..-|.-
T Consensus 100 ~~l~~~~~~q~l~~~y~~s~I--ttiErRF-----------------~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~H 160 (735)
T KOG3626|consen 100 VLLSLAAFAQGLYVGYFNSVI--TTIERRF-----------------KISSSQSGLIASSYDIGNLLLIIFVSYFGSRGH 160 (735)
T ss_pred HHHHHHHHHHHhhhhhhhhhh--hhhhhhc-----------------CCCCCcceeEeeecccchhhhhHhHHHhccccC
Confidence 334444455555555554333 3555555 899999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHhh--------------------c---------------------------c----HH-HH
Q 035548 108 RKPTIQAASVFFLIGAILNCLA--------------------Q---------------------------N----LG-ML 135 (518)
Q Consensus 108 rr~~l~~~~~l~~~~~~~~~~~--------------------~---------------------------~----~~-~l 135 (518)
|-+.+-+|.++.+++++++++- + . ++ .+
T Consensus 161 rPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llf 240 (735)
T KOG3626|consen 161 RPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLF 240 (735)
T ss_pred ccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHH
Confidence 9999999999999999998762 0 0 12 57
Q ss_pred HHHHHHhhhhhhcccchhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCC-----------------Cc
Q 035548 136 IAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHP-----------------YG 198 (518)
Q Consensus 136 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~-----------------~~ 198 (518)
+++.++.|+|....++.+.+|+-|...+++-+..+|+......+|.++|.+++++...... --
T Consensus 241 f~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGA 320 (735)
T KOG3626|consen 241 FLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGA 320 (735)
T ss_pred HHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhH
Confidence 7789999999999999999999999999999999999999999999999999877543210 13
Q ss_pred chHHHHhhhHHHHHHHHHhhcccCChhhHHhcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhccccc---chhhhcc
Q 035548 199 WRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKH---PYRSLMK 275 (518)
Q Consensus 199 wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 275 (518)
|..-|++.+.+.++..+.++++|.+.+...++ .++ ++.+..++.+. ..+....... .+.+.++
T Consensus 321 WWlGFLi~g~~~~~~a~p~f~fPk~lp~~~~~---~~~----~~~~~~k~~~~-------~~~~~~~~~~~ikdfp~s~~ 386 (735)
T KOG3626|consen 321 WWLGFLICGALLLFSAVPLFFFPKELPKSQKR---KRA----RDLHVLKTESG-------GAKSDKTFGKKIKDFPKSIK 386 (735)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccCcccccc---chh----hhhcccccccc-------cccCCcchhhhHHHHHHHHH
Confidence 67778888888888888888888654311110 000 00000000000 0000000011 1112223
Q ss_pred cCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHH-HcCCCChHHHHHHHHHHH-HHHHHhhhhhhhhhccC--ChHHHHH
Q 035548 276 KSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQ-TMGYGSNASLLSAVISGT-INVASTLVAIVLVDKAG--RKILLVQ 351 (518)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~--~~~~~~~ 351 (518)
+...+++++...+........+..+.+|+|.|++ ++|.++..+..+.....+ +..+|.+++|+++.|+. .|....+
T Consensus 387 ~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~ 466 (735)
T KOG3626|consen 387 RLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKF 466 (735)
T ss_pred HHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHH
Confidence 3334455666666666677778888999999996 569999988888755554 45567788999999875 3444444
Q ss_pred hHHHHHHHH
Q 035548 352 AAIQMIICQ 360 (518)
Q Consensus 352 ~~~~~~~~~ 360 (518)
..+...+..
T Consensus 467 ~~~~~~l~l 475 (735)
T KOG3626|consen 467 VIVCSVLSL 475 (735)
T ss_pred HHHHHHHHH
Confidence 443333333
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.4e-13 Score=122.26 Aligned_cols=329 Identities=13% Similarity=0.039 Sum_probs=214.4
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhc-----cHHHHH-HHHHHHHHHHHHHHhh-----c-------cH--
Q 035548 73 YCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFG-----RKPTIQ-AASVFFLIGAILNCLA-----Q-------NL-- 132 (518)
Q Consensus 73 ~~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~G-----rr~~l~-~~~~l~~~~~~~~~~~-----~-------~~-- 132 (518)
|+++.....+.+.+...+... ..+.+|+.+|+.+ ||..++ .|..+...+..+..++ . +.
T Consensus 9 EL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~ 87 (403)
T PF03209_consen 9 ELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWL 87 (403)
T ss_pred HhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHH
Confidence 458888888999888877654 6899999999998 765554 5666666665555542 2 12
Q ss_pred H--HHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCc-chHHHHhh--h
Q 035548 133 G--MLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYG-WRISLGGA--A 207 (518)
Q Consensus 133 ~--~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~-wr~~f~~~--~ 207 (518)
+ ...+.-.+.|+|.+...+...+++.|..|+++|+++.++......+|.+++..+.+.+.. +++ -|..-.+. +
T Consensus 88 g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~--~~s~~rL~~v~~~~a 165 (403)
T PF03209_consen 88 GLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLD--PFSPERLIQVIQGVA 165 (403)
T ss_pred HHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHcc--ccCHHHHHHHHHHHH
Confidence 2 344557789999999999999999999999999999999999999999999998765543 222 22222222 2
Q ss_pred HHHHHHHHHhhcccCChhhHHhcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHH
Q 035548 208 VPALFLLLGSCIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTF 287 (518)
Q Consensus 208 ~~~~~~~~~~~~~~e~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (518)
++.+...++..+-.|.+.. ... ....+++......++++..++..++++...+
T Consensus 166 ~i~~~l~~ia~wg~E~r~~-~~~--------------------------~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~ 218 (403)
T PF03209_consen 166 LIALLLNLIALWGQEPRRS-RRA--------------------------AAAERPRPPFREAWRQVWASPQARRFFVFLF 218 (403)
T ss_pred HHHHHHHHHHHHhcccCCc-ccc--------------------------cCCCCCCccHHHHHHHHHhCCChhHHHHHHH
Confidence 2222222222222232210 000 0000011111234555666666666555555
Q ss_pred HHHHHHhhchhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhh-ccCChHHHHHhHHHHHHHHHHHHHH
Q 035548 288 IHMLQQLTGINVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVD-KAGRKILLVQAAIQMIICQCAIGVI 366 (518)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (518)
+..+..+ ..-...-|+=-+.+|++..++..+....+.+.++|..+.+++.. |.++++...++.....+++.++.+.
T Consensus 219 l~t~a~~---~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a 295 (403)
T PF03209_consen 219 LGTLAFF---MQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILA 295 (403)
T ss_pred HHHHHHH---hhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 4433221 11122234444668999999999999999999999988888766 6778888778887777777766655
Q ss_pred HHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhc
Q 035548 367 LKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCK 445 (518)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 445 (518)
.. ..+.+.......+++.+.+...... .+...+..+++..|..+|.....+.+...++..+.|.+.|.
T Consensus 296 ~~----------~~~~~~~~~~~~l~G~g~G~f~vga-ls~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~ 363 (403)
T PF03209_consen 296 GP----------LGSPWLFRPGVFLLGLGNGLFTVGA-LSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDL 363 (403)
T ss_pred Hh----------cccchHHHHHHHHHHHhhhHHHHHH-HHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 2334444444444544444333222 24456778788889999999999999999999999888875
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.6e-17 Score=160.15 Aligned_cols=366 Identities=14% Similarity=0.072 Sum_probs=3.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhc------------------------
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQ------------------------ 130 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~------------------------ 130 (518)
+++.++.|++.+.+-++..+..++..++.+|..|-|.+-.|.++.+++++++++=+
T Consensus 34 ~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~ 113 (539)
T PF03137_consen 34 GLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNL 113 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccccccccc
Confidence 99999999999999999999999999999999888999999999999998876510
Q ss_pred --------------------------cHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHH
Q 035548 131 --------------------------NLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAA 184 (518)
Q Consensus 131 --------------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~ 184 (518)
-+..++++.++.|+|....++.+.+|+-|..++++-+..+|+..+...+|.++|
T Consensus 114 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~G 193 (539)
T PF03137_consen 114 CDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALG 193 (539)
T ss_dssp --------------------------------------SSS---------------------------------------
T ss_pred ccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHH
Confidence 024688889999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccccC----------------CC----cchHHHHhhhHHHHHHHHHhhcccCChhhHHhcCChhHHHHHHHhhh
Q 035548 185 NLINYGTSRIH----------------PY----GWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTLRKIR 244 (518)
Q Consensus 185 ~~i~~~~~~~~----------------~~----~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~a~~~~~~~~ 244 (518)
.++++...... +- .|..-|++.+++.++..+..+++|++-+...+ ..++.+...++.
T Consensus 194 f~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~~~--~~~~~~~~~~~~- 270 (539)
T PF03137_consen 194 FLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGTSE--RQEEKESSERKE- 270 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCccc--ccchhhhhhcch-
Confidence 99987654321 00 26666777777777766666667654321100 000000000000
Q ss_pred CCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHH-HcCCCChHHHHHHH
Q 035548 245 GVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQ-TMGYGSNASLLSAV 323 (518)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~ 323 (518)
++.+++..+.++..+...+....+...++...+++.++...+...........+.++.|.|++ +++.++.++.++..
T Consensus 271 --~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G 348 (539)
T PF03137_consen 271 --EDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTG 348 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --hhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHh
Confidence 000000000000000000011122222334445555666666666666677788889999986 56999888887775
Q ss_pred HHHH-HHHHHhhhhhhhhhccC--ChHHHHHhHHHHHHHHHHHHHHHHH----------hccc---------CC------
Q 035548 324 ISGT-INVASTLVAIVLVDKAG--RKILLVQAAIQMIICQCAIGVILKM----------FLLT---------TN------ 375 (518)
Q Consensus 324 ~~~~-~~~~~~~~~g~l~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~---------~~------ 375 (518)
...+ +.++|.+++|++.+|++ .|+.+....+...+..+.+.....+ .... .+
T Consensus 349 ~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn 428 (539)
T PF03137_consen 349 IVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCN 428 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCC
Confidence 5544 66788899999999975 3444444444333333331111100 0000 00
Q ss_pred --------------CCCC-chhHH-HHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHH-HHHHHHHHH
Q 035548 376 --------------TMPT-VPAKV-VVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNM-VFTFVIAQA 438 (518)
Q Consensus 376 --------------~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~-~~~~~~~~~ 438 (518)
.... ..... .++..++..+.......|.. ...-..+|+++|+.+.|+...+.. +|.+-+|.+
T Consensus 429 ~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~-~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIi 507 (539)
T PF03137_consen 429 SCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPST-LITLRCVPPEQRSFALGVQWLIIRLLGFIPGPII 507 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchh-eeeeccCChhhcchhhhHHHHHHHhhcCcchHHH
Confidence 0000 01111 12222222222233333433 445688999999999999887765 577889999
Q ss_pred hHHHHhcc
Q 035548 439 FLSMLCKM 446 (518)
Q Consensus 439 ~~~~~~~~ 446 (518)
+|.+.|..
T Consensus 508 fG~iiD~t 515 (539)
T PF03137_consen 508 FGAIIDST 515 (539)
T ss_dssp --------
T ss_pred HhHHHhhh
Confidence 99999864
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.6e-14 Score=135.91 Aligned_cols=319 Identities=13% Similarity=0.100 Sum_probs=206.9
Q ss_pred HHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhh--hhhcccchhhhHHHhcCCCC
Q 035548 87 SLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGI--GVGFGNQAVPLFISEIAPPK 164 (518)
Q Consensus 87 ~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~--~~g~~~~~~~~~i~~~~~~~ 164 (518)
...+...+.++..|.++||+|||..+.+..+...+..+...+.. +|.++ +.|+ +.+.......++++|....+
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~ 144 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEE 144 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchh
Confidence 44677889999999999999999999999999888888777765 44333 4443 34457778889999999999
Q ss_pred cchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHH-HHhhcccCChhhHHhcCChhHHHHHHHhh
Q 035548 165 YRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLL-LGSCIIVETPASLIERGKQEQGLYTLRKI 243 (518)
Q Consensus 165 ~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~-~~~~~~~e~p~~~~~~~~~~~a~~~~~~~ 243 (518)
+|....++.......+..++|.+++..... .|.-.+|.+..+..++.. ....++||+-....+. ++ ..+..
T Consensus 145 ~R~~~~gll~~~~~~~~~~~p~~~~~~~~~--~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~---~~---~~~~~ 216 (463)
T KOG2816|consen 145 ERSSSIGLLSGTFGAGLVIGPALGGYLVKF--LGIALVFLIAAASGILSLLYMLLFLPESLQEKERS---DA---TLREL 216 (463)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHhhccccccCccccc---cc---ccccc
Confidence 999999999999999999999998777654 477788888888877744 4556677764211100 00 00000
Q ss_pred hCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHH-HcCCCChHHHHHH
Q 035548 244 RGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQ-TMGYGSNASLLSA 322 (518)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~ 322 (518)
... ..........++...+....+..+.......+..........-..+++++ .++++..+.+.+.
T Consensus 217 ~~~-------------~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~ 283 (463)
T KOG2816|consen 217 TPG-------------SLDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLL 283 (463)
T ss_pred CCC-------------cccchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHH
Confidence 000 00000001112222222222222222222222211111111101122333 4699999999888
Q ss_pred HHHHHHHHHHhhhhh-hhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhcccc
Q 035548 323 VISGTINVASTLVAI-VLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWG 401 (518)
Q Consensus 323 ~~~~~~~~~~~~~~g-~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (518)
+..+....++.++.. .+...++.|+....++....+....+++. +..|.......... +.....
T Consensus 284 ~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~-------------~~~w~~~~~~v~~~--~~~~~~ 348 (463)
T KOG2816|consen 284 SLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFA-------------TETWMMFAAGVVVA--LAGIVF 348 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHh-------------ccchhhhHHHHHHH--hhcchh
Confidence 888988989888776 77778888888888887777777777764 22222222222221 222233
Q ss_pred ccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhcc
Q 035548 402 PICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKM 446 (518)
Q Consensus 402 ~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 446 (518)
|...+..+...+++++|++.++...+..+.+.++|.+.+.+...+
T Consensus 349 pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t 393 (463)
T KOG2816|consen 349 PAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALT 393 (463)
T ss_pred HHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 555677788889999999999999999999999999998886543
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-14 Score=119.14 Aligned_cols=134 Identities=24% Similarity=0.358 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCC
Q 035548 85 TSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPK 164 (518)
Q Consensus 85 ~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~ 164 (518)
.+.+.++..+++++.|++.||+|||+.+..+..+..++.++..+.++++.+.+.+++.|++.+...+...+++.|.+|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 34567788999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred cchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcc
Q 035548 165 YRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCII 220 (518)
Q Consensus 165 ~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 220 (518)
+|++..++.+....+|..+++.+.+.+.. ..+|++.+++.++..++..+..+++
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLAQ--FLGWRAPFLFLAILALAAFILLAFL 137 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHhc--ccchHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999776653 3589999988888777755544443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-12 Score=117.18 Aligned_cols=233 Identities=12% Similarity=0.116 Sum_probs=154.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhh
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVP 154 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (518)
|+++.|++.+....+....+..++.|.++||+|||+.-++..++.+++++. -..++++.++++|++.|++.+..+.+-.
T Consensus 65 g~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~-k~~~~~~~L~~GRvlgGiaTSLLfS~FE 143 (354)
T PF05631_consen 65 GFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT-KHSSNYPVLLLGRVLGGIATSLLFSAFE 143 (354)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999998864 4669999999999999999999999888
Q ss_pred hHH-HhcCC----CCcchhHHhHHH-HHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHh-hcccCChhhH
Q 035548 155 LFI-SEIAP----PKYRGGLNICFQ-LLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGS-CIIVETPASL 227 (518)
Q Consensus 155 ~~i-~~~~~----~~~r~~~~~~~~-~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~ 227 (518)
++. .|.-. ++..+..++... ..+++-.+.+.+++-.+......|-..+|....+..++..++. ...+|++...
T Consensus 144 sW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~ 223 (354)
T PF05631_consen 144 SWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGDT 223 (354)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCCc
Confidence 875 44422 222222233222 2223333444445444443333455788887777666644443 3455543200
Q ss_pred HhcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHH
Q 035548 228 IERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVL 307 (518)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (518)
. +..+ . .+..+..++.+. ..++++.......+.....+.++..|.|.+
T Consensus 224 ~---~~~~-------------~-------------~~~~~~a~~~i~---~d~ril~LG~~qslFE~smy~FVflWtPaL 271 (354)
T PF05631_consen 224 S---SSSS-------------L-------------SGSFREAWRAIL---SDPRILLLGLIQSLFEGSMYLFVFLWTPAL 271 (354)
T ss_pred c---cccc-------------h-------------HHHHHHHHHHHH---cCchhHHHHHHHHHHHHHHHHheeeeecee
Confidence 0 0000 0 000011122222 345667777777777777777788888877
Q ss_pred HHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 035548 308 FQTMGYGSNASLLSAVISGTINVASTLVAIVLVDK 342 (518)
Q Consensus 308 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 342 (518)
-.+ + ....-|+++..+.+..++|+.+..++..+
T Consensus 272 ~~~-~-~~~P~GlIFssFM~a~MlGS~lf~~l~s~ 304 (354)
T PF05631_consen 272 DPD-D-EELPLGLIFSSFMVAMMLGSSLFSRLLSK 304 (354)
T ss_pred cCC-C-CCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 521 1 12336888899999999999888765544
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.5e-13 Score=137.56 Aligned_cols=141 Identities=15% Similarity=0.035 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhhhHHHhc
Q 035548 81 LQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEI 160 (518)
Q Consensus 81 ~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~ 160 (518)
..+...+..++..++.++.|+++||+|||++++++.++.+++.++.+++++...+++.+++.|++.++.++...++++|+
T Consensus 597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl 676 (742)
T TIGR01299 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVEL 676 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677789999999999999999999999999999999999999999888889999999998888999999999999
Q ss_pred CCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccCCh
Q 035548 161 APPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETP 224 (518)
Q Consensus 161 ~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p 224 (518)
+|.++|++++|+......+|.+++|.+++.+... +...+|++.+++.++..++.+++||+.
T Consensus 677 ~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~---~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 677 YPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI---TKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999997655432 356788888887777777777788864
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.7e-12 Score=123.92 Aligned_cols=349 Identities=12% Similarity=0.081 Sum_probs=202.5
Q ss_pred cccCCChhHHHHHHHHHHHHHHHHHHhhHHhhhhh-----ccHHHHHHHHHHHHHHHHHHHhhc----cHHHHHHHHHHh
Q 035548 72 NYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKF-----GRKPTIQAASVFFLIGAILNCLAQ----NLGMLIAGRLSL 142 (518)
Q Consensus 72 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~-----Grr~~l~~~~~l~~~~~~~~~~~~----~~~~l~~~r~l~ 142 (518)
+++|+++.+.....++..+...+ -+++|.++|.+ .||+-++++.++..++.+..+..+ +.....+.-++.
T Consensus 18 ~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la 96 (433)
T PF03092_consen 18 DDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLA 96 (433)
T ss_pred HHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHH
Confidence 34599999999988888877655 56788999986 367777778877766666555533 466777778889
Q ss_pred hhhhhcccchhhhHHHhcCCCC--cchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcc
Q 035548 143 GIGVGFGNQAVPLFISEIAPPK--YRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCII 220 (518)
Q Consensus 143 G~~~g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 220 (518)
.+|......++-+++.|...++ .|+...+.......+|.+++..+++.+... .++|..|.+.+++..+..+..+++
T Consensus 97 ~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~--~~~~~~f~i~~~~~~l~~~~~~~~ 174 (433)
T PF03092_consen 97 SFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDS--FGPQGVFLISAALPLLMLIVALFL 174 (433)
T ss_pred HHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhc--CCCeEEehHHHHHHHHHHHHHHHh
Confidence 9999999999999999988433 367888888888899999999887766543 578888988877766655555444
Q ss_pred cCChhhHHhcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHH-HHHHHHHHHhhchhH
Q 035548 221 VETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLIC-GTFIHMLQQLTGINV 299 (518)
Q Consensus 221 ~e~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 299 (518)
.|+.+ .. +.++.....+. ..+... ...++.....++.++.+..++..+ ..++....... ...
T Consensus 175 ~~e~~-~~---~~~~~~~~~~~-----~~~~~~-------~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~-~~a 237 (433)
T PF03092_consen 175 LEERK-VR---PADEVFSFGKE-----EVPCLF-------GSFREQLSELWRALQQRAIWQPILFFIFFFNLPPSI-SSA 237 (433)
T ss_pred hhhcc-cc---ccchhhccccc-----ccchhh-------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCC-CCc
Confidence 44211 00 00000000000 000000 000000112222333222222222 11111111110 011
Q ss_pred -HHHhHHHHHHHcC---CCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCC
Q 035548 300 -VMFYAPVLFQTMG---YGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTN 375 (518)
Q Consensus 300 -~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (518)
..++. .+..+ +++...+.+..+..++.++|..+..+...+..-|+++....++..+..+.-.+... .....-
T Consensus 238 ~~fy~~---~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~-~~n~~~ 313 (433)
T PF03092_consen 238 SSFYFQ---TDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVT-RWNLDL 313 (433)
T ss_pred cEEEEE---eccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEE-EEeeee
Confidence 11111 12234 77777788887777888888877777666667677766555444333222111100 000000
Q ss_pred CCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccc
Q 035548 376 TMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMR 447 (518)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (518)
..++. +..+.-..+........+.|.. .+++|++|+..-|+.+++...+.++|..++..+...+.+..+
T Consensus 314 Gi~d~--~f~lgd~~l~~~~~~i~~mP~l-vl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~ 382 (433)
T PF03092_consen 314 GIPDQ--WFALGDTILEEVIGMIAFMPSL-VLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG 382 (433)
T ss_pred CcCCe--EEEEEhHHHHHHHHHHHHHHHH-HHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 00111 2222222223333333333443 457899999999999999999999999999999988877655
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-12 Score=127.50 Aligned_cols=179 Identities=17% Similarity=0.122 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHH
Q 035548 281 QLICGTFIHMLQQLTGINVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQ 360 (518)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 360 (518)
+.+....+..+...........+.|.+.+++|.+..+.++......++.+++.++.|+++||+|||+.+..+..+..++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 96 (398)
T TIGR00895 17 RAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFT 96 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 33343433444333344556677888888899999999999999999999999999999999999999988887777766
Q ss_pred HHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhH
Q 035548 361 CAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFL 440 (518)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~ 440 (518)
++.... .+.+..++...+.+.+.+ ...+....+..|.+|++.|+++.++.+....++..+++.+.+
T Consensus 97 ~~~~~~-------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 162 (398)
T TIGR00895 97 LLCALA-------------TNVTQLLILRFLAGLGLG-GLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAG 162 (398)
T ss_pred HHHHHc-------------cchHHHHHHHHHHhcccc-cchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHH
Confidence 655442 222333333333333333 233455678899999999999999999999999999999999
Q ss_pred HHHhccchhhHHHHH-HHHHHHHHHHHhcccCCC
Q 035548 441 SMLCKMRWGIFFFFT-GWLLISLIFSATMLPETK 473 (518)
Q Consensus 441 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 473 (518)
.+.+..++...+.+. .+..+...+...+.|++.
T Consensus 163 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (398)
T TIGR00895 163 WLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESI 196 (398)
T ss_pred HHhhcccceeehhhhhhHHHHHHHHHHHhCCCCC
Confidence 998887765443333 455555555555566653
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.9e-12 Score=124.40 Aligned_cols=145 Identities=14% Similarity=0.127 Sum_probs=121.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhh
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVP 154 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (518)
|++..+.+++.+...++..++.++.|+++||+|||+.+..+.....+......+.++.+.+++.+++.+++.|...+...
T Consensus 248 ~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~ 327 (393)
T PRK15011 248 HLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGM 327 (393)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888999998888888889999999999999999988887766666555555677888888899999988888777888
Q ss_pred hHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccC
Q 035548 155 LFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVE 222 (518)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 222 (518)
.+..|.+|+ +|+++.++++....+|..+++.+++.+.+. .||+..|++.+++.++.++..++.+|
T Consensus 328 ~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 328 LYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEI--WNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 888998885 599999999999999999999998776543 58999999888888887777776654
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.7e-11 Score=114.34 Aligned_cols=345 Identities=11% Similarity=0.002 Sum_probs=209.1
Q ss_pred cCCChhHHH-HHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccch
Q 035548 74 CKYDNQYLQ-LFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQA 152 (518)
Q Consensus 74 ~~~s~~~~~-~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 152 (518)
.|++.+|+. -+.-...-.+....++...+.|..|.|++++++.+...+...+..+.++...+-+..++.|++.+ ...+
T Consensus 35 kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a-~eva 113 (412)
T PF01770_consen 35 KNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATA-AEVA 113 (412)
T ss_pred cCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHH-HHHH
Confidence 478887775 45555666778888999999999999999999999999999999999999999999999999888 4678
Q ss_pred hhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccCChhhHHhcCC
Q 035548 153 VPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGK 232 (518)
Q Consensus 153 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~ 232 (518)
..+|+-...|+++-.++.+...++.-+|..++.+++-.+......+.+...++......+.++..+++|..++...-+++
T Consensus 114 y~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r~ 193 (412)
T PF01770_consen 114 YYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKRSLFFHRK 193 (412)
T ss_pred HHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccceecc
Confidence 88999999999988999999999999999999988877766665677778777777666777777888876654332222
Q ss_pred hhHHHHHHHhhhCC--ccHHHHHHHH-HHHHHhhcccccchhhhc---ccCChhHHHHHHHHHHHHHhhchhHHHHhHHH
Q 035548 233 QEQGLYTLRKIRGV--KDVEKEYAEI-CRATEISNLIKHPYRSLM---KKSSRPQLICGTFIHMLQQLTGINVVMFYAPV 306 (518)
Q Consensus 233 ~~~a~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (518)
.++... .++.... ++.+++..+. +.........+..++.++ +.....+.++...+.+....+++..+..|...
T Consensus 194 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ~ 272 (412)
T PF01770_consen 194 PPAEQD-ANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQVINYVQS 272 (412)
T ss_pred Cccccc-cccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 211110 0000000 0000000000 000000000011111111 11222333444555566666777777888777
Q ss_pred HHHHc---CCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhH
Q 035548 307 LFQTM---GYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAK 383 (518)
Q Consensus 307 ~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (518)
+.++. +-.....|.+-....+.+.++++..|++..+..+...+..+......+.+++... ...+.|
T Consensus 273 LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~-----------~t~~Iw 341 (412)
T PF01770_consen 273 LWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMS-----------FTGNIW 341 (412)
T ss_pred HHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHH-----------HhhHHH
Confidence 77766 3334455777788888888889999998555555444333333222222222211 124455
Q ss_pred HHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHH
Q 035548 384 VVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFT 432 (518)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~ 432 (518)
......+++...+..... +...-++.....+.-+..+|+..++..+..
T Consensus 342 v~Y~~yIif~~~y~fliT-iA~~qIA~~l~~e~yaLVFGiNtf~Al~LQ 389 (412)
T PF01770_consen 342 VCYAGYIIFRSLYMFLIT-IASFQIAKNLSEERYALVFGINTFVALVLQ 389 (412)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHhccccceeeeeeeHHHHHHHHH
Confidence 555555555555544322 222223333334444555555544444333
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-12 Score=127.58 Aligned_cols=148 Identities=13% Similarity=0.123 Sum_probs=123.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhc----cHHHHHHHHHHhhhhhhcccc
Q 035548 76 YDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQ----NLGMLIAGRLSLGIGVGFGNQ 151 (518)
Q Consensus 76 ~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~----~~~~l~~~r~l~G~~~g~~~~ 151 (518)
++..+.+...++..++..++.++.|+++||+|||+++..+.++.+++..+..... +++.+++.+++.|++.+...+
T Consensus 248 ~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~ 327 (418)
T TIGR00889 248 FVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNI 327 (418)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3457789999999999999999999999999999999999999988877666632 246677889999999998889
Q ss_pred hhhhHHHhcCCCCcchhHHhHHH-HHHHHHHHHHHHHHhhccccCC----CcchHHHHhhhHHHHHHHHH-hhcccCC
Q 035548 152 AVPLFISEIAPPKYRGGLNICFQ-LLITVGILAANLINYGTSRIHP----YGWRISLGGAAVPALFLLLG-SCIIVET 223 (518)
Q Consensus 152 ~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~i~~~i~~~~~~~~~----~~wr~~f~~~~~~~~~~~~~-~~~~~e~ 223 (518)
....++.|++|+++|+++.++.+ ....+|.++||++++.+..... +||+..|.+.++..++..++ .++++|+
T Consensus 328 ~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 328 SGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999997 6788999999999887765422 47999999888877775444 4456654
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.5e-12 Score=126.19 Aligned_cols=148 Identities=14% Similarity=0.088 Sum_probs=125.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhh
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVP 154 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (518)
+.+..+.|++.++..++..++.+++|++.||+|||+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+...
T Consensus 258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 337 (420)
T PRK09528 258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVF 337 (420)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999988888999999999999999999988888888
Q ss_pred hHHHhcCCCCcchhHHhH-HHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHh-hcccCCh
Q 035548 155 LFISEIAPPKYRGGLNIC-FQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGS-CIIVETP 224 (518)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~-~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p 224 (518)
.++.|.+|++.|++..+. ++....+|.++++.+.+.+.+. .|||..|.+.++..++..++. ..++++|
T Consensus 338 ~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~--~G~~~~f~~~~~~~~i~~~~~~~~~~~~~ 407 (420)
T PRK09528 338 KYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDS--IGFQGTYLILGGIVLLFTLISVFTLSGDR 407 (420)
T ss_pred HHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHh--hCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 999999999988887655 6777889999999998776543 589999998888776644444 3444433
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.8e-12 Score=123.13 Aligned_cols=137 Identities=15% Similarity=0.051 Sum_probs=118.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccH--HHHHHHHHHhhhhhhcccch
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNL--GMLIAGRLSLGIGVGFGNQA 152 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~--~~l~~~r~l~G~~~g~~~~~ 152 (518)
+.++.+.+++.+.+.++..+++++.|++.||+|||+.+..+.++..++.++..+.++. ..+++..++.|++.+...+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 315 (377)
T TIGR00890 236 GLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISL 315 (377)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhc
Confidence 7788889999999999999999999999999999999999999988888877776643 33556688889988888888
Q ss_pred hhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHH
Q 035548 153 VPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFL 213 (518)
Q Consensus 153 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~ 213 (518)
...++.|.+|+++|+++.++.+....+|..++|.+.+.+.. ..||++.|++.++..++.
T Consensus 316 ~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~--~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 316 FPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALT--EIGFEYTFIVTGAFALTS 374 (377)
T ss_pred cHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh--hhchhhHHHHHHHHHHHh
Confidence 88999999999999999999999999999999999776643 358999998888776654
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-11 Score=121.01 Aligned_cols=143 Identities=17% Similarity=0.166 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhhhHHHh
Q 035548 80 YLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISE 159 (518)
Q Consensus 80 ~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~ 159 (518)
+.++..+.+.++..++.++.|++.||+|||+.+..+..+.+++.++..+.++.+.+++.+++.|++.+...+.....+.|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~ 329 (399)
T PRK05122 250 GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVK 329 (399)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34666778888999999999999999999999999998888888888888898888899999999999888888888899
Q ss_pred cCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccCCh
Q 035548 160 IAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETP 224 (518)
Q Consensus 160 ~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p 224 (518)
.+|+++|+++.++++....+|..+++.+.+.+.. ..||+..|++.++..++..+..+++++++
T Consensus 330 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (399)
T PRK05122 330 RVPPQNRGAALGAYSVFLDLSLGITGPLAGLVAS--WFGYPSIFLAAALAALLGLALTWLLYRRA 392 (399)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999988888666543 35899999998888777666665555433
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-11 Score=118.58 Aligned_cols=144 Identities=24% Similarity=0.307 Sum_probs=132.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHH-HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchh
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKP-TIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAV 153 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~-~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 153 (518)
|.++.+.++..+...++..++.++.|++.||+|||+ .+..+..+..++.++..+.++.+.+.+..++.|++.+...+..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 286 (352)
T cd06174 207 GLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPAL 286 (352)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhH
Confidence 778999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred hhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcc
Q 035548 154 PLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCII 220 (518)
Q Consensus 154 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 220 (518)
.+++.|..|+++|++.+++.+....+|..+++.+.+.+.+ ..+|+..+++.+++.++..+..+++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~--~~~~~~~~~~~~~~~~i~~i~~~~~ 351 (352)
T cd06174 287 LTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD--TGGYGGVFLILAALALLAALLLLLL 351 (352)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccCcchHHHHHHHHHHHHHHHheec
Confidence 9999999999999999999999999999999999877654 3589999999999888876665543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.39 E-value=2e-11 Score=119.35 Aligned_cols=181 Identities=15% Similarity=0.119 Sum_probs=129.3
Q ss_pred ChhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHH
Q 035548 278 SRPQLICGTFIHMLQQLTGINVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMI 357 (518)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 357 (518)
..++.+....+................|.+.+++|.+..+.++..+...++..++.++.|++.||+|||+.+..+.++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~ 88 (405)
T TIGR00891 9 AQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFS 88 (405)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34444555555555555556666777788888899999999999999999999999999999999999999998887777
Q ss_pred HHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHH
Q 035548 358 ICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQ 437 (518)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~ 437 (518)
++.++..+. .+.+..+....+.+.+.+.. .+....++.|.+|+++|+.+.++.+....+|..+++.
T Consensus 89 ~~~~~~~~~-------------~~~~~l~~~~~l~G~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 154 (405)
T TIGR00891 89 AGTLACGFA-------------PGYITMFIARLVIGIGMGGE-YGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQ 154 (405)
T ss_pred HHHHHHHHh-------------ccHHHHHHHHHHHHhhhhhh-hHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHH
Confidence 776665542 22333333333344333332 2445567789999999999999999999999999999
Q ss_pred HhHHHHhccc--hhhHHHHHHHHHHHHHHHHhcccCC
Q 035548 438 AFLSMLCKMR--WGIFFFFTGWLLISLIFSATMLPET 472 (518)
Q Consensus 438 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (518)
+.+.+.+..+ +...+...++..+..++.....||+
T Consensus 155 l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~ 191 (405)
T TIGR00891 155 VYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEA 191 (405)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9998887765 5544444444444444444445554
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.3e-11 Score=117.59 Aligned_cols=182 Identities=13% Similarity=0.012 Sum_probs=130.1
Q ss_pred hhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHH
Q 035548 279 RPQLICGTFIHMLQQLTGINVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMII 358 (518)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 358 (518)
+++.....++.+..............|.+.+++|++..+.++..+...++..++.++.|++.||+|||+.+..+.++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~ 85 (412)
T TIGR02332 6 FRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGI 85 (412)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHH
Confidence 34445555555555444455566667777789999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 035548 359 CQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQA 438 (518)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~ 438 (518)
+.++..+. .+.+..+..-.+.+.+.+. ..+....++.|.+|++.|+++.++.+....+|..+++.+
T Consensus 86 ~~~~~~~~-------------~~~~~l~~~r~l~G~~~~~-~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~ 151 (412)
T TIGR02332 86 ASTATMFA-------------TGPESLYLLRILVGIAEAG-FLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLIL 151 (412)
T ss_pred HHHHHHHh-------------cCHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776652 1222333333333333332 234555677999999999999999999999999999999
Q ss_pred hHHHHhc------cchhhH-HHHHHHHHHHHHHHHhcccCCCC
Q 035548 439 FLSMLCK------MRWGIF-FFFTGWLLISLIFSATMLPETKG 474 (518)
Q Consensus 439 ~~~~~~~------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 474 (518)
.+.+.+. .+|... .+.+...++...+.++++||+++
T Consensus 152 ~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 152 SGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred HHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 9988752 355444 44344444555556666777653
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.7e-11 Score=117.47 Aligned_cols=165 Identities=12% Similarity=0.088 Sum_probs=114.6
Q ss_pred HhhchhHHHHhHHHHH-HHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhc
Q 035548 293 QLTGINVVMFYAPVLF-QTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFL 371 (518)
Q Consensus 293 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (518)
...+......+.+.++ +++|++..+.++..+...++.+++.++.|+++||+|||+.+..+.....++.+.+.+.
T Consensus 19 ~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~----- 93 (395)
T PRK10054 19 LTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV----- 93 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH-----
Confidence 3444555566666665 5689999999999999999999999999999999999999888887777666655442
Q ss_pred ccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchh-h
Q 035548 372 LTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWG-I 450 (518)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 450 (518)
++.+..+....+.+.+.. ...+....+..|..|++.|+++.|+.+...++|..++|.+.+.+.+ .++. .
T Consensus 94 --------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~ 163 (395)
T PRK10054 94 --------NNVTLVVLFFALINCAYS-VFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLP 163 (395)
T ss_pred --------hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcH
Confidence 122222222223322222 2334556677899999999999999999999999999999998875 4544 4
Q ss_pred HHHHHHHHHHHHHHHHhcccCC
Q 035548 451 FFFFTGWLLISLIFSATMLPET 472 (518)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~ 472 (518)
+...+.+.++..+...++.++.
T Consensus 164 f~~~~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 164 FWLAAICSAFPLVFIQIWVQRS 185 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 4444444444434444444443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.38 E-value=1e-11 Score=121.07 Aligned_cols=163 Identities=15% Similarity=0.067 Sum_probs=121.4
Q ss_pred hHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCC
Q 035548 298 NVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTM 377 (518)
Q Consensus 298 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (518)
.......|.+.+++|.+..+.++..+...++..++.++.|++.||+|||+.+..+.++..++..++.+.
T Consensus 11 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~----------- 79 (399)
T TIGR00893 11 ANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA----------- 79 (399)
T ss_pred HhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH-----------
Confidence 345556677778899999999999999999999999999999999999999988888777777666552
Q ss_pred CCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHH-HHH
Q 035548 378 PTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWGIFFF-FTG 456 (518)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 456 (518)
.+.+..++...+.+.+.+. ..+....++.|.+|+++|+++.++.+....++..+++.+.+.+.+..++...+. .+.
T Consensus 80 --~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 156 (399)
T TIGR00893 80 --GAYVSLYILRVLLGAAEAP-FFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGV 156 (399)
T ss_pred --cCHHHHHHHHHHHHHHHHh-hhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 2333344444444444333 334556778999999999999999999999999999999999888887654444 344
Q ss_pred HHHHHHHHHHhcccCCCC
Q 035548 457 WLLISLIFSATMLPETKG 474 (518)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~ 474 (518)
+.++..+......+++++
T Consensus 157 ~~~~~~~~~~~~~~~~~~ 174 (399)
T TIGR00893 157 LGIIWGVLWLKFIPDPPQ 174 (399)
T ss_pred HHHHHHHHhhheecCCCC
Confidence 444444444445555443
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.2e-11 Score=119.84 Aligned_cols=161 Identities=14% Similarity=0.135 Sum_probs=119.4
Q ss_pred hhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCC
Q 035548 297 INVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNT 376 (518)
Q Consensus 297 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (518)
......+.|.+.+++|++..+.++..+...++..++.++.|++.||+|||+.+.++.++..++.++....
T Consensus 39 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---------- 108 (434)
T PRK11663 39 RKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFS---------- 108 (434)
T ss_pred hhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHH----------
Confidence 3455677888889999999999999999999999999999999999999999988888888777766542
Q ss_pred CCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHH
Q 035548 377 MPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFFTG 456 (518)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (518)
.+.+..++...+.+.+.+.. .+....++.|.+|+++|++++++.+....++..+++.+.+.+.+..++...+...+
T Consensus 109 ---~~~~~l~~~~~l~g~~~g~~-~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~ 184 (434)
T PRK11663 109 ---SSLWAFALLWVLNAFFQGWG-WPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAG 184 (434)
T ss_pred ---hHHHHHHHHHHHHHHHHHcc-chHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 22222333333333333333 24455678899999999999999999999999999999999998888765444433
Q ss_pred -HHHHHHHHHHhcccC
Q 035548 457 -WLLISLIFSATMLPE 471 (518)
Q Consensus 457 -~~~~~~~~~~~~~~~ 471 (518)
+.++..++..+.++|
T Consensus 185 i~~~~~~~~~~~~~~~ 200 (434)
T PRK11663 185 IIAIVVGLFLCWRLRD 200 (434)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 333343444444554
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.6e-12 Score=121.97 Aligned_cols=147 Identities=12% Similarity=0.079 Sum_probs=123.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhh
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVP 154 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (518)
|.+..+.+.+.+...++..++.++.|+++||+|||+.+..+.+...++.++..+.++.+.+.+.-++.|++.++..+...
T Consensus 251 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 330 (406)
T PRK11551 251 GLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLY 330 (406)
T ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHH
Confidence 78888999999999999999999999999999999999888777777777777788888888888999998888888999
Q ss_pred hHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccC
Q 035548 155 LFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVE 222 (518)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 222 (518)
+++.|.+|+++|+++.++.+....+|..++|.+.+.+.... .+|...+++.....++..+..+++.+
T Consensus 331 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (406)
T PRK11551 331 ALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG-RSTVGVIGASIPVILVAALAALLLVS 397 (406)
T ss_pred HHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC-CchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999987765432 35667776666666655555554443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.6e-11 Score=117.70 Aligned_cols=166 Identities=17% Similarity=0.150 Sum_probs=121.1
Q ss_pred hchhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccC
Q 035548 295 TGINVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTT 374 (518)
Q Consensus 295 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (518)
..........|.+.+++|.+..+.++..+...++..++.++.|++.||+|||+.+..+..+..++.+.....
T Consensus 19 ~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-------- 90 (385)
T TIGR00710 19 LGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS-------- 90 (385)
T ss_pred HHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH--------
Confidence 344455556788888999999999999999999999999999999999999999998887777777666542
Q ss_pred CCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchhh-HHH
Q 035548 375 NTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWGI-FFF 453 (518)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 453 (518)
.+.+.......+.+.+.+.. .+....++.|.+|+++|+++.++.+....++..+++.+.+.+.+..++.. ++.
T Consensus 91 -----~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~ 164 (385)
T TIGR00710 91 -----NNIETLLVLRFVQAFGASAG-SVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAF 164 (385)
T ss_pred -----ccHHHHHHHHHHHHcchhHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 22223333333333333222 24455678899999999999999999999999999999999988877654 444
Q ss_pred HHHHHHHHHHHHHhcccCCCC
Q 035548 454 FTGWLLISLIFSATMLPETKG 474 (518)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~ 474 (518)
.+.+..+..+..++..||+++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~ 185 (385)
T TIGR00710 165 LSLAGILLSALIFFILPETLP 185 (385)
T ss_pred HHHHHHHHHHHHHHhCCCCCC
Confidence 444445544555555565443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.9e-11 Score=116.91 Aligned_cols=144 Identities=15% Similarity=0.105 Sum_probs=121.2
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhh
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVP 154 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (518)
|.++.+.+++.+.......++.++.|++.||+|||+++..+.++..+......+.++.+.+.+.+++.|++.+...+...
T Consensus 231 g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 310 (375)
T TIGR00899 231 GLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGM 310 (375)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888899988888778888999999999999999999888777666666666678888888899999999998888888
Q ss_pred hHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhccc
Q 035548 155 LFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIV 221 (518)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 221 (518)
.++.|..|++ ++++.++.+....+|..++|.+++.+... .||+..|++.++..++..+...+++
T Consensus 311 ~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~ 374 (375)
T TIGR00899 311 LYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAER--WSYHAVYWFAIVMLIVALFCLLLIK 374 (375)
T ss_pred HHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHHHHheec
Confidence 9999988764 67999999999999999999998766443 5899999998888877766666554
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.2e-11 Score=118.42 Aligned_cols=137 Identities=14% Similarity=0.133 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhhhHHHhc
Q 035548 81 LQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEI 160 (518)
Q Consensus 81 ~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~ 160 (518)
.++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+.+.+++.|++.+...+...+.+.|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 330 (392)
T PRK12382 251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKR 330 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 45666778888899999999999999999999999999988888888888888888999999999998888888899999
Q ss_pred CCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhc
Q 035548 161 APPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCI 219 (518)
Q Consensus 161 ~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 219 (518)
+|+++|+++.++.+....+|..++|.+.+.+.+. .||+..|.+.++..++..+..++
T Consensus 331 ~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~--~g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 331 VPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATS--FGYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCchHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999997766543 58999999988877775555443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.7e-11 Score=113.62 Aligned_cols=139 Identities=9% Similarity=-0.051 Sum_probs=123.2
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhh
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVP 154 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (518)
|.+..+.|.+.+...++..++.++.+++.||+|+|+.+.++.++..+..++.+++++.+.+++.+++.|+..+...+...
T Consensus 236 g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~ 315 (382)
T TIGR00902 236 GISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAM 315 (382)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhcCCCCcchhHHhHHH-HHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHh
Q 035548 155 LFISEIAPPKYRGGLNICFQ-LLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGS 217 (518)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~-~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~ 217 (518)
.++.+. |+++|++..++++ ...++|..+++.+++.+.+. .|+ ..|++.++++++..++.
T Consensus 316 ~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~--~g~-~~~~~~~~~~~~~~~~~ 375 (382)
T TIGR00902 316 RYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPT--LGA-GTFVFMAIIAAAAFFLI 375 (382)
T ss_pred HHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccH-HHHHHHHHHHHHHHHHH
Confidence 999998 9989999999986 57889999999998887654 465 55767777666654443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.6e-11 Score=113.82 Aligned_cols=159 Identities=14% Similarity=0.107 Sum_probs=117.0
Q ss_pred HHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 035548 300 VMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPT 379 (518)
Q Consensus 300 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (518)
.....|.+.+++|.+..+.++..+...++..++.+..|++.||+|||+.+..+..+..++.+...+.
T Consensus 28 ~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------------- 94 (390)
T PRK03545 28 PVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA------------- 94 (390)
T ss_pred HHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh-------------
Confidence 3445688889999999999999999999999999999999999999999999888888877766552
Q ss_pred chhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchh-hHHHHHHHH
Q 035548 380 VPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWG-IFFFFTGWL 458 (518)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 458 (518)
++.+..++.-.+.+.+.+ ...+....+..|.+|+++|+++.|+......++..++|.+.+.+.+..++. .+++.+.+.
T Consensus 95 ~~~~~l~~~r~~~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~ 173 (390)
T PRK03545 95 WNFTVLLISRIGIAFAHA-IFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGA 173 (390)
T ss_pred ccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHH
Confidence 223333333333333222 223444567789999999999999999999999999999999988887865 444444444
Q ss_pred HHHHHHHHhcccCC
Q 035548 459 LISLIFSATMLPET 472 (518)
Q Consensus 459 ~~~~~~~~~~~~~~ 472 (518)
++.........|+.
T Consensus 174 ~l~~~~~~~~~~~~ 187 (390)
T PRK03545 174 LITLLLLIKLLPLL 187 (390)
T ss_pred HHHHHHHHHhCCCC
Confidence 44444444445543
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-10 Score=113.54 Aligned_cols=162 Identities=13% Similarity=0.196 Sum_probs=114.9
Q ss_pred HhhchhHHHHhHHHHHH-HcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhcc-CChHHHHHhHHHHHHHHHHHHHHHHHh
Q 035548 293 QLTGINVVMFYAPVLFQ-TMGYGSNASLLSAVISGTINVASTLVAIVLVDKA-GRKILLVQAAIQMIICQCAIGVILKMF 370 (518)
Q Consensus 293 ~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (518)
....++.+..++|.++. ++|++..+++...........++.+++|+++||+ |||+.+.++.++..++.+++...
T Consensus 21 e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~---- 96 (493)
T PRK15462 21 EYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGAS---- 96 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh----
Confidence 33456667777887775 5699999999999999999999999999999999 99999998888888777655431
Q ss_pred cccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChh--hhhhHHHHHHHHHHHHHHHHHHHhHHHHhccch
Q 035548 371 LLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLE--TRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRW 448 (518)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (518)
............+...+.+. ..+...++..|.+|++ .|.+++++.+...++|+.++|.+.+++.+..++
T Consensus 97 --------~~~~~~~~l~l~li~iG~G~-~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw 167 (493)
T PRK15462 97 --------EIHPSFLYLSLAIIVCGYGL-FKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSW 167 (493)
T ss_pred --------hcchhHHHHHHHHHHHhccc-ccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhCh
Confidence 11111122222222222222 2244456789999975 789999999999999999999999999988886
Q ss_pred hhHHHHHHHHHHHHHHHHh
Q 035548 449 GIFFFFTGWLLISLIFSAT 467 (518)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~ 467 (518)
...+..+++..+.+++.+.
T Consensus 168 ~~~F~iaaigm~l~li~~~ 186 (493)
T PRK15462 168 AMGFGLAAVGMIAGLVIFL 186 (493)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6544444444444444333
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-10 Score=111.65 Aligned_cols=160 Identities=9% Similarity=0.089 Sum_probs=117.0
Q ss_pred HHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCC
Q 035548 299 VVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMP 378 (518)
Q Consensus 299 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (518)
......|.+.+++|+++.+.++..+...++..++.++.|++.||+|||+.+..+..+..++.++....
T Consensus 38 ~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~------------ 105 (394)
T PRK10213 38 LPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA------------ 105 (394)
T ss_pred HHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH------------
Confidence 33445677788899999999999999999999999999999999999999999998888877665542
Q ss_pred CchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHH-HHH
Q 035548 379 TVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFF-TGW 457 (518)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 457 (518)
.+.+..++.-.+.+.+.+. ..+....++.|.+|+++|+.+.++......++..++|.+.+.+.+..++...+.. +.+
T Consensus 106 -~~~~~l~~~r~l~G~~~g~-~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l 183 (394)
T PRK10213 106 -NSFSLLLIGRACLGLALGG-FWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVM 183 (394)
T ss_pred -ChHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 2333333333333433333 2345566788999999999999999999999999999999999988886644433 333
Q ss_pred HHHHHHHHHhcccCC
Q 035548 458 LLISLIFSATMLPET 472 (518)
Q Consensus 458 ~~~~~~~~~~~~~~~ 472 (518)
.++..+......|++
T Consensus 184 ~~~~~l~~~~~~p~~ 198 (394)
T PRK10213 184 GVLCIFWIIKSLPSL 198 (394)
T ss_pred HHHHHHHHHHHCCCC
Confidence 333333333334543
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.9e-11 Score=117.05 Aligned_cols=163 Identities=13% Similarity=0.071 Sum_probs=118.2
Q ss_pred hhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCC
Q 035548 297 INVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNT 376 (518)
Q Consensus 297 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (518)
...+....|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+.+..+..+..++.+++.+.
T Consensus 11 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---------- 80 (379)
T TIGR00881 11 RKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS---------- 80 (379)
T ss_pred HHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh----------
Confidence 3455666788888899999999999999999999999999999999999999999888888777776653
Q ss_pred CCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHH-HhHHHHhccchhh-HHHH
Q 035548 377 MPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQ-AFLSMLCKMRWGI-FFFF 454 (518)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~ 454 (518)
.+.+..++...+.+.+.+ ...+....++.|.+|+++|+++.++.+....++..+++. +.+.+.+..++.. +++.
T Consensus 81 ---~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (379)
T TIGR00881 81 ---TSLWVMAALWALNGIFQG-MGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVP 156 (379)
T ss_pred ---hhHHHHHHHHHHHHhhcc-ccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHH
Confidence 223333333333333333 334566678899999999999999999999999999994 5555555556543 4444
Q ss_pred HHHHHHHHHHHHhcccCCC
Q 035548 455 TGWLLISLIFSATMLPETK 473 (518)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~ 473 (518)
+.+.++..++...+.++++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~ 175 (379)
T TIGR00881 157 GIIAIIVSLICFLLLRDSP 175 (379)
T ss_pred HHHHHHHHHHHheeeCCCc
Confidence 4444555555555555543
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.4e-11 Score=120.04 Aligned_cols=140 Identities=10% Similarity=0.003 Sum_probs=115.2
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhh--ccHHHHHH--HHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhccc
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKF--GRKPTIQA--ASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGN 150 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~--Grr~~l~~--~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 150 (518)
|.+..+.+++.++..++..+++++.|+++||. ++|+...+ +.++.+++.+++.+.++++.+++.+++.|++.+...
T Consensus 272 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~ 351 (455)
T TIGR00892 272 GVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVG 351 (455)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHH
Confidence 88999999999999999999999999999984 34443333 344445555666778899999999999999999999
Q ss_pred chhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHH
Q 035548 151 QAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLL 215 (518)
Q Consensus 151 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~ 215 (518)
+...+++.|.+|++++++..++++....+|.++||.+++.+.... .+|+..|++.++..++..+
T Consensus 352 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~-g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 352 ALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDAT-KNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhc-CCcchHHHHhhHHHHHHHH
Confidence 999999999999999999999999999999999999977665432 2599999888887665443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.2e-10 Score=106.58 Aligned_cols=174 Identities=12% Similarity=0.068 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHhhchhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHH
Q 035548 283 ICGTFIHMLQQLTGINVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCA 362 (518)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 362 (518)
++...+..+.....-+...-.+|.+-+++|.+...+|...+.+.++..++.++...+.||+.||++++....++.++.++
T Consensus 15 l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l 94 (394)
T COG2814 15 LLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLL 94 (394)
T ss_pred HHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHH
Confidence 33344444444445566777889999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHH
Q 035548 363 IGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSM 442 (518)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 442 (518)
..+. .+.+...+.=.+.+...+.. .++...+..++.|+++|+++.++.+....++..+|.++..++
T Consensus 95 ~alA-------------p~f~~Ll~aR~~~g~a~G~f-~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~i 160 (394)
T COG2814 95 SALA-------------PSFAVLLLARALAGLAHGVF-WSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFL 160 (394)
T ss_pred HHHh-------------ccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHH
Confidence 8774 23333333333333333322 346667889999999999999999999999999999999999
Q ss_pred Hhccchh-hHHHHHHHHHHHHHHHHhccc
Q 035548 443 LCKMRWG-IFFFFTGWLLISLIFSATMLP 470 (518)
Q Consensus 443 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 470 (518)
-|..||. .|+..+.+.++..+..+..+|
T Consensus 161 g~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 161 GQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999975 677777777777777888888
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1e-10 Score=113.81 Aligned_cols=177 Identities=15% Similarity=0.162 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHhhchhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHH
Q 035548 283 ICGTFIHMLQQLTGINVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCA 362 (518)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 362 (518)
+............+........|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+.+..+.....++...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~ 84 (392)
T PRK10473 5 LLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLL 84 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 33444444444455566667788888999999999999999999999999999999999999999998888777777666
Q ss_pred HHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHH
Q 035548 363 IGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSM 442 (518)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 442 (518)
+... .+.+..+....+.+.+.+. ..+....++.|.+|+++|+++.++.+....++..++|.+.+.+
T Consensus 85 ~~~~-------------~~~~~~~~~~~l~g~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l 150 (392)
T PRK10473 85 CSLA-------------ETSSLFLAGRFLQGIGAGC-CYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLI 150 (392)
T ss_pred HHHh-------------CcHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5442 1222222222333332222 2234556778999999999999999999999999999998888
Q ss_pred Hhccchhh-HHHHHHHHHHHHHHHHhcccCCC
Q 035548 443 LCKMRWGI-FFFFTGWLLISLIFSATMLPETK 473 (518)
Q Consensus 443 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 473 (518)
.+..++.. +++.+.+..+..++.....+|++
T Consensus 151 ~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 151 MLKFPWQSLFYTMAAMGILVLLLSLFILKETR 182 (392)
T ss_pred HhCcChHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 77777643 44545555555555555566543
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-10 Score=114.79 Aligned_cols=149 Identities=9% Similarity=-0.010 Sum_probs=110.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHh---h-ccHHHHHHHHHHhhhhhhccc
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCL---A-QNLGMLIAGRLSLGIGVGFGN 150 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~---~-~~~~~l~~~r~l~G~~~g~~~ 150 (518)
|.+......+.....+...++.++.|+++||+|||+++..+.++..++.+.+.. . ++.+.+++..++.|++.+...
T Consensus 282 g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 361 (438)
T PRK09952 282 GLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVV 361 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666777889999999999999999998887766555433322 2 234455556777788888888
Q ss_pred chhhhHHHhcCCCCcchhHHhHHH-HHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccCC
Q 035548 151 QAVPLFISEIAPPKYRGGLNICFQ-LLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVET 223 (518)
Q Consensus 151 ~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~ 223 (518)
+...+++.|.+|.+.|+...++.. .+..+|..++|.+.+.+......+|+..+...++..++..+..+.++|+
T Consensus 362 ~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 362 CVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 888999999999999988888854 4455888999988777655433468888887777777766666666653
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.8e-11 Score=111.10 Aligned_cols=161 Identities=12% Similarity=0.086 Sum_probs=129.9
Q ss_pred HHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCC
Q 035548 299 VVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMP 378 (518)
Q Consensus 299 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (518)
.+..-.|.+.++.++|..+.+.+.+.+.+..-++.++.|.++||.+.|+.+..++++.++..+++++.
T Consensus 47 nF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs------------ 114 (448)
T COG2271 47 NFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFS------------ 114 (448)
T ss_pred hHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhh------------
Confidence 45666788888889999999999999999999999999999999999999999999999999999873
Q ss_pred CchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHh--HHHHhccchh-hHHHHH
Q 035548 379 TVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAF--LSMLCKMRWG-IFFFFT 455 (518)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~ 455 (518)
.+.+...++..+-+.+-+.++.|. .-.+..-+|+++||+..++.|+..++|+.+.|.+. +.+.++.++. .++.-+
T Consensus 115 -~s~~~~~~l~~lng~fQg~Gwpp~-~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pg 192 (448)
T COG2271 115 -PSLFLFAVLWVLNGWFQGMGWPPC-ARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPG 192 (448)
T ss_pred -hHHHHHHHHHHHHHHHhcCCCcHH-HHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHH
Confidence 244444555555555556666554 45578999999999999999999999999999999 8888877755 555555
Q ss_pred HHHHHHHHHHHhcccCCC
Q 035548 456 GWLLISLIFSATMLPETK 473 (518)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~ 473 (518)
+++++.+++.++..+++.
T Consensus 193 iiaiival~~~~~~rd~P 210 (448)
T COG2271 193 IIAIIVALILLFLLRDRP 210 (448)
T ss_pred HHHHHHHHHHHHHhCCCc
Confidence 566666666666665543
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-10 Score=114.54 Aligned_cols=161 Identities=14% Similarity=0.101 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHhhchhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHH
Q 035548 283 ICGTFIHMLQQLTGINVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCA 362 (518)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 362 (518)
.....+..+.............|.+.+++|.++.+.++..+...++..++.++.|++.||+|||+.+..+.....++.+.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~ 99 (426)
T PRK12307 20 LFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGL 99 (426)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 33333444444444455566677777889999999999999999999999999999999999999999998888888776
Q ss_pred HHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHH
Q 035548 363 IGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSM 442 (518)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 442 (518)
..+. .+.+..++.-.+.+.+.+. ..+....++.|.+|++.|+++.++......+|..+++.+.+.+
T Consensus 100 ~~~~-------------~~~~~l~~~r~l~G~g~g~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l 165 (426)
T PRK12307 100 SGLA-------------SGVIMLTLSRFIVGMGMAG-EYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSF 165 (426)
T ss_pred HHHH-------------hHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHH
Confidence 6553 2233333333333333332 2344456778999999999999999999999999999998888
Q ss_pred HhccchhhHHHHHHH
Q 035548 443 LCKMRWGIFFFFTGW 457 (518)
Q Consensus 443 ~~~~~~~~~~~~~~~ 457 (518)
.+..++...+.+..+
T Consensus 166 ~~~~~w~~~f~i~~~ 180 (426)
T PRK12307 166 AEAYGWRAAFFVGLL 180 (426)
T ss_pred cccCCHHHHHHHHHH
Confidence 887776655544433
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-10 Score=112.44 Aligned_cols=141 Identities=15% Similarity=0.092 Sum_probs=116.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhh
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVP 154 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (518)
|.+..+.+++.+...++..+++++.|++.||+|+|+++..+..+..++.+... + .......+++.|++.....|...
T Consensus 231 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~~~~~~p~~~ 307 (381)
T PRK03633 231 GMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAAGFTLYPVAM 307 (381)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHHHHhHHHHHH
Confidence 78888999999999999999999999999999999999988888777665443 2 23445577888888888889999
Q ss_pred hHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcc
Q 035548 155 LFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCII 220 (518)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 220 (518)
+++.|..|+++++...+......++|..+||.+++.+.+. .+|++.|.+.+...++..+..+..
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~--~g~~~~f~~~~~~~l~~~~~~~~~ 371 (381)
T PRK03633 308 AWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQN--YSDNLLFIMIASVSFIYLLMLLRK 371 (381)
T ss_pred HHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHhc
Confidence 9999999988888888888889999999999998876543 589999998888777665555544
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.3e-09 Score=101.99 Aligned_cols=324 Identities=12% Similarity=0.076 Sum_probs=187.2
Q ss_pred HHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCC
Q 035548 85 TSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPK 164 (518)
Q Consensus 85 ~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~ 164 (518)
.++-+....+++++.+.+.|+.|.|..++++...+..-.+..-+ +|-+.++.+-.+.|+|.+..+..--.|++|..+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 77788888999999999999999999999999999877766644 66777899999999999999999999999999999
Q ss_pred cchhHHhHHHHHHHHHHHHHHHHHhhccccCC------Ccch--------------HHHHhhhHHHHHHHHHhhcccCCh
Q 035548 165 YRGGLNICFQLLITVGILAANLINYGTSRIHP------YGWR--------------ISLGGAAVPALFLLLGSCIIVETP 224 (518)
Q Consensus 165 ~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~------~~wr--------------~~f~~~~~~~~~~~~~~~~~~e~p 224 (518)
.+.+..++.......+.++|..+-........ .+-+ ..+.+...+..+.++...+.|.+.
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~ 214 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSKD 214 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCccc
Confidence 99999999988889899988776433322111 1121 111111111122222222333211
Q ss_pred hhHHhcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhH
Q 035548 225 ASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYA 304 (518)
Q Consensus 225 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (518)
. .. + .+.. +.......+..++....++++......+............+.
T Consensus 215 ~-~~------~----------------------~~~~-~~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iyp 264 (461)
T KOG3098|consen 215 V-VN------C----------------------KSSS-ETSFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYP 264 (461)
T ss_pred h-hh------h----------------------hhhc-cccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccc
Confidence 0 00 0 0000 001122233444444455544444443333222222222222
Q ss_pred HHHHH--HcCC-CChHHHHHHHHHHHHHHHHhhhhhhhhhc---cCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCC
Q 035548 305 PVLFQ--TMGY-GSNASLLSAVISGTINVASTLVAIVLVDK---AGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMP 378 (518)
Q Consensus 305 ~~~~~--~~g~-~~~~~~~~~~~~~~~~~~~~~~~g~l~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (518)
..+.- ..+. +....+......+++.+++....+.+.+| +||+..+.++..+..+..++.-+..........+..
T Consensus 265 t~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~ 344 (461)
T KOG3098|consen 265 TCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDS 344 (461)
T ss_pred hhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcc
Confidence 22221 2222 23344566677788888888888888766 577888877777666666655443221110000000
Q ss_pred -----CchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHH
Q 035548 379 -----TVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLS 441 (518)
Q Consensus 379 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~ 441 (518)
.+......++..+.+.+ -..+....+.++...+ ++.|..+.++.-.-..+...++-.....
T Consensus 345 ~~~~~~~~~~~~~ii~~l~G~~-D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~ 410 (461)
T KOG3098|consen 345 PPLLFTPSYYLALIIGFLLGFG-DACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPY 410 (461)
T ss_pred cccccccchhHHHHHHHHHhhH-HHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 01122222333333332 2233445566677777 5666888888777777776665555443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.2e-10 Score=110.27 Aligned_cols=155 Identities=12% Similarity=0.089 Sum_probs=115.1
Q ss_pred hhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCC
Q 035548 297 INVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNT 376 (518)
Q Consensus 297 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (518)
........|.+..+.+.+..+.++..+...++.+++.++.|+++||+|||+.+..+..+..++.++.......
T Consensus 15 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~------- 87 (365)
T TIGR00900 15 TAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALL------- 87 (365)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHc-------
Confidence 4455566777888889999999999999999999999999999999999999998887777766665553210
Q ss_pred CCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHH
Q 035548 377 MPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFFTG 456 (518)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (518)
...+.+..+....+.+.+.+. ..+...++..|.+|+++|+++.++.+....++..+++.+.+.+.+..++...+...+
T Consensus 88 -~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~ 165 (365)
T TIGR00900 88 -GGLNIWQVYVLAGILAIAQAF-FTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDA 165 (365)
T ss_pred -CCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 111333333333333333332 334556788999999999999999999999999999999999998888665444444
Q ss_pred HHHH
Q 035548 457 WLLI 460 (518)
Q Consensus 457 ~~~~ 460 (518)
+..+
T Consensus 166 ~~~~ 169 (365)
T TIGR00900 166 VGFA 169 (365)
T ss_pred HHHH
Confidence 3333
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.4e-10 Score=114.43 Aligned_cols=178 Identities=17% Similarity=0.107 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHH
Q 035548 282 LICGTFIHMLQQLTGINVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQC 361 (518)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 361 (518)
.+....+..+....-......-.|.+.+++|.+..+.++....+.++...+.++.|+++||+|||+.+..+..+..++.+
T Consensus 7 ~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~ 86 (495)
T PRK14995 7 TLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASL 86 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 34444455555555556677778999999999999999999999999999999999999999999999999988888887
Q ss_pred HHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeeccc-CChhhhhhHHHHHHHHHHHHHHHHHHHhH
Q 035548 362 AIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEI-YPLETRNAGYFFAVSTNMVFTFVIAQAFL 440 (518)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~r~~~~g~~~~~~~~~~~~~~~~~~ 440 (518)
+.+.. .+.+..++.-.+.+.+.+.. .+.....+.+. .|+++|+++.|+......++..++|.+.+
T Consensus 87 ~~~~a-------------~~~~~li~~r~l~G~g~~~~-~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg 152 (495)
T PRK14995 87 AAAFS-------------PTASWLIATRALLAIGAAMI-VPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGG 152 (495)
T ss_pred HHHHc-------------CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77652 23333333333334333322 23333334444 47899999999999999999999999999
Q ss_pred HHHhccchh-hHHHHHHHHHHHHHHHHhcccCCC
Q 035548 441 SMLCKMRWG-IFFFFTGWLLISLIFSATMLPETK 473 (518)
Q Consensus 441 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 473 (518)
.+.+..+|. .+++...++++..++...++|+.+
T Consensus 153 ~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~ 186 (495)
T PRK14995 153 ILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQA 186 (495)
T ss_pred HhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999988865 444444455555555555566543
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-10 Score=114.01 Aligned_cols=168 Identities=13% Similarity=-0.006 Sum_probs=116.5
Q ss_pred chhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCC
Q 035548 296 GINVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTN 375 (518)
Q Consensus 296 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (518)
+........|.+.++.+.++.+.++......++..++.++.|+++||++||+.+..+..+.+++...+......
T Consensus 32 ~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~------ 105 (417)
T PRK10489 32 GLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFL------ 105 (417)
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHc------
Confidence 34556667788888888899999999999999999999999999999999999887776666665554432110
Q ss_pred CCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHH
Q 035548 376 TMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFFT 455 (518)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (518)
...+.+.......+.+.+.+.. .+....+..|..|+++|+++.++.+....++..+++.+.+.+.+..++...+.+.
T Consensus 106 --~~~~~~~l~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~ 182 (417)
T PRK10489 106 --PEPSLLAIYLLGLWDGFFGSLG-VTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLA 182 (417)
T ss_pred --CCCcHHHHHHHHHHHHHHHHHH-HHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHH
Confidence 1122233333333333332222 2334466789999999999999999999999999999999998877755444444
Q ss_pred HHHHHHHHHHHhcccCC
Q 035548 456 GWLLISLIFSATMLPET 472 (518)
Q Consensus 456 ~~~~~~~~~~~~~~~~~ 472 (518)
++..+...+.....|+.
T Consensus 183 ~~~~~~~~~~~~~l~~~ 199 (417)
T PRK10489 183 AAGTFITLLPLLRLPAL 199 (417)
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 44444444444445543
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.7e-11 Score=118.24 Aligned_cols=173 Identities=15% Similarity=0.151 Sum_probs=125.6
Q ss_pred HHHHHHHHhhchhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHH
Q 035548 286 TFIHMLQQLTGINVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGV 365 (518)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 365 (518)
+.+..+.............|.+.+++|.+..+.++..+...++..++.++.|++.||+|||+.+..+..+..++.++...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 86 (485)
T TIGR00711 7 LMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGV 86 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhC
Confidence 33333444444556777789999999999999999999999999999999999999999999999888888777766644
Q ss_pred HHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhc
Q 035548 366 ILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCK 445 (518)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 445 (518)
. .+.+..+....+.+.+.+ ...+....++.|.+|++.|+++.++......++..++|.+.+.+.+.
T Consensus 87 ~-------------~~~~~l~~~~~~~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 152 (485)
T TIGR00711 87 A-------------PNLELMIIFRVIQGFGGG-PLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIEN 152 (485)
T ss_pred c-------------CCHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccC
Confidence 2 223333333333333322 23355667789999999999999999999999999999999999888
Q ss_pred cchh-hHHHHHHHHHHHHHHHHhcccCC
Q 035548 446 MRWG-IFFFFTGWLLISLIFSATMLPET 472 (518)
Q Consensus 446 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 472 (518)
.++. .++....+.++..++..+..|+.
T Consensus 153 ~~w~~~f~~~~~~~~~~~~~~~~~~~~~ 180 (485)
T TIGR00711 153 YHWRWIFLINVPIGIIVVVVAFFILPRD 180 (485)
T ss_pred cCceehhhhhhHHHHHHHHHHHHHcCCc
Confidence 7755 34444444444444444455554
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.4e-10 Score=114.90 Aligned_cols=167 Identities=16% Similarity=0.105 Sum_probs=121.6
Q ss_pred hHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHH
Q 035548 280 PQLICGTFIHMLQQLTGINVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIIC 359 (518)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 359 (518)
++.+....+..+.............|.+.+++|.+..+.++......++..++.++.|++.||+|||+.+..+.++.+++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 98 (496)
T PRK03893 19 WKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVG 98 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 33444444444444444556666778888889999999999999999999999999999999999999999888887777
Q ss_pred HHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHh
Q 035548 360 QCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAF 439 (518)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~ 439 (518)
.+.+.+. .+.+..+....+.+.+.+ ...+....++.|.+|++.|+.+.++.+....++..+++.+.
T Consensus 99 ~~~~~~~-------------~~~~~l~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 164 (496)
T PRK03893 99 TLACGFA-------------PGYWTLFIARLVIGMGMA-GEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVY 164 (496)
T ss_pred HHHHHHH-------------hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766552 222333333333333322 22334456778999999999999999999999999999999
Q ss_pred HHHHhccchhhHHHHHHHHHH
Q 035548 440 LSMLCKMRWGIFFFFTGWLLI 460 (518)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~ 460 (518)
+.+.+..++...+.+..+..+
T Consensus 165 ~~l~~~~~w~~~f~~~~~~~~ 185 (496)
T PRK03893 165 SLVVPVWGWRALFFIGILPII 185 (496)
T ss_pred HHHhccCCHHHHHHHHHHHHH
Confidence 999888887655554443333
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.8e-11 Score=116.43 Aligned_cols=145 Identities=15% Similarity=0.027 Sum_probs=109.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHH--HHHhhccHHHHHHHHHHhhhhhhcccch
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAI--LNCLAQNLGMLIAGRLSLGIGVGFGNQA 152 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~--~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 152 (518)
|++..+.++..+...++..++.+++|+++||+|||+.+.....+..++.. .....++.+.+.+.+++.|++.......
T Consensus 290 g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 369 (467)
T PRK09556 290 GFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLL 369 (467)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHH
Confidence 88999999999999999999999999999999999887765544444332 2233456777778888888754434333
Q ss_pred hhhHHHhcCCCCcchhHHhHHHHHHHH-HHHHHHHHHhhcccc----------CCCcchHHHHhhhHHHHHHHHHhhc
Q 035548 153 VPLFISEIAPPKYRGGLNICFQLLITV-GILAANLINYGTSRI----------HPYGWRISLGGAAVPALFLLLGSCI 219 (518)
Q Consensus 153 ~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~i~~~i~~~~~~~----------~~~~wr~~f~~~~~~~~~~~~~~~~ 219 (518)
......|.+|+++|+++.|+.+....+ |..++|.+.+.+.+. ...+|+..|++.++..++..+..++
T Consensus 370 ~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 370 IGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence 446677999999999999999988886 778888887766650 0357999998887777665554443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.4e-10 Score=113.28 Aligned_cols=172 Identities=10% Similarity=0.077 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHhhchhHHHHhHHHHHHH---cCCCChHHHHHHHHHHHHHHHHhhhhhhhhhc-cCChHHHHHhHHHHHH
Q 035548 283 ICGTFIHMLQQLTGINVVMFYAPVLFQT---MGYGSNASLLSAVISGTINVASTLVAIVLVDK-AGRKILLVQAAIQMII 358 (518)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~ 358 (518)
+.......+....+++....++|.++++ +|++..+++.......++..++.+++|+++|| +|||+.+..+..+.++
T Consensus 12 ~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~ 91 (475)
T TIGR00924 12 LFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLML 91 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHH
Confidence 3334444444445566777778888764 79999999999999999999999999999999 8999999999988888
Q ss_pred HHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhh---hhhHHHHHHHHHHHHHHHH
Q 035548 359 CQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLET---RNAGYFFAVSTNMVFTFVI 435 (518)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---r~~~~g~~~~~~~~~~~~~ 435 (518)
+.+++.+. . +.+.......+.+.+.+ ...+....+..+.+|++. |++++++.+...++|..++
T Consensus 92 g~~~~~~~------------~-~~~~~~~~~~l~g~g~g-~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig 157 (475)
T TIGR00924 92 GHFMLAMS------------I-YPDLIFYGLGTIAVGSG-LFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFIS 157 (475)
T ss_pred HHHHHHhc------------c-cHhHHHHHHHHHHhccc-cccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHH
Confidence 87766552 1 22222223333333322 233455566788887653 8889999999999999999
Q ss_pred HHHhHHHHhccchhhHHHHHHHHHHHHHHHHhc
Q 035548 436 AQAFLSMLCKMRWGIFFFFTGWLLISLIFSATM 468 (518)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (518)
|.+.+.+.+..++...+...++..+.+++.+.+
T Consensus 158 ~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~ 190 (475)
T TIGR00924 158 PLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFA 190 (475)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence 999999998878665444444443334444433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.3e-10 Score=110.11 Aligned_cols=160 Identities=11% Similarity=0.080 Sum_probs=113.7
Q ss_pred hhHHHHhHHHH-HHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCC
Q 035548 297 INVVMFYAPVL-FQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTN 375 (518)
Q Consensus 297 ~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (518)
.+....+.+.+ .++.|++..+.++......+...+..++.|+++||+|||+.+..+.....++.+.+...
T Consensus 26 ~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~--------- 96 (400)
T PRK11646 26 FFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA--------- 96 (400)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh---------
Confidence 34444455544 46789999999999999999999999999999999999999999888888877776542
Q ss_pred CCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchh-hHHHH
Q 035548 376 TMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWG-IFFFF 454 (518)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 454 (518)
++.+..+....+.+.+.+ ...|...+++.|.+|++.|+++.|+.+....++..++|.+.+.+. ..++. .+++.
T Consensus 97 ----~~~~~l~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~ 170 (400)
T PRK11646 97 ----HEPWLLWLSCILSGLGGT-LFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATG 170 (400)
T ss_pred ----ccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHH
Confidence 223333333333333332 223444566789999999999999999999999999999999988 55654 34444
Q ss_pred HHHHHHHHHHHHhcccC
Q 035548 455 TGWLLISLIFSATMLPE 471 (518)
Q Consensus 455 ~~~~~~~~~~~~~~~~~ 471 (518)
+..+++..++.....|+
T Consensus 171 ~~~~~~~~i~~~~~~~~ 187 (400)
T PRK11646 171 AVLFVLAAAFNAWLLPA 187 (400)
T ss_pred HHHHHHHHHHHHHhCCc
Confidence 44444444444444454
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.6e-10 Score=113.19 Aligned_cols=150 Identities=17% Similarity=0.050 Sum_probs=110.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhc--cH-H-HHHHHHHHhhhhhhc-c
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQ--NL-G-MLIAGRLSLGIGVGF-G 149 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~--~~-~-~l~~~r~l~G~~~g~-~ 149 (518)
|.+.....+......++..++.++.|+++||+|||++++.+.++.+++.++++... +. + ....+-++.+++.+. .
T Consensus 302 g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (479)
T PRK10077 302 GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSW 381 (479)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccc
Confidence 66666667777778888999999999999999999999999999888887765431 21 1 233344444444443 3
Q ss_pred cchhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhcc----ccCCCcchHHHHhhhHHHHHHHHHhh-cccCCh
Q 035548 150 NQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTS----RIHPYGWRISLGGAAVPALFLLLGSC-IIVETP 224 (518)
Q Consensus 150 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~----~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e~p 224 (518)
.+....++.|.+|+++|++++++......+|.++++.+..... ..+..+|++.|++.++++++..+..+ +.||+.
T Consensus 382 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 461 (479)
T PRK10077 382 GPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 461 (479)
T ss_pred cchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCC
Confidence 3677899999999999999999999999999988876643322 12346889999888877777555544 456543
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=6e-10 Score=108.33 Aligned_cols=162 Identities=12% Similarity=0.068 Sum_probs=115.2
Q ss_pred hhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHH
Q 035548 279 RPQLICGTFIHMLQQLTGINVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMII 358 (518)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 358 (518)
+++..+...+.++.............|.+.+++|++..+.++..+...++..++.++.|++.||+|||+.+..+..+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i 84 (394)
T PRK03699 5 RIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMIL 84 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34444444444444444445566677888889999999999999999999999999999999999999999888877777
Q ss_pred HHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 035548 359 CQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQA 438 (518)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~ 438 (518)
+.++..+. ++.+..++...+.+.+.+... +....++.|.+|++.|+.+.++.+....+++.++|.+
T Consensus 85 ~~~l~~~~-------------~~~~~~~~~~~l~G~~~g~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 150 (394)
T PRK03699 85 AVAGLMFS-------------HSLALFSIAMFVLGVVSGITM-SIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPII 150 (394)
T ss_pred HHHHHHHc-------------chHHHHHHHHHHHHHhhHhhc-cchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 76665542 223333333333333333322 3445667899999999999998888888899999999
Q ss_pred hHHHHhc-cchhhHHHH
Q 035548 439 FLSMLCK-MRWGIFFFF 454 (518)
Q Consensus 439 ~~~~~~~-~~~~~~~~~ 454 (518)
.+.+.+. .++...+..
T Consensus 151 ~~~l~~~~~gw~~~f~~ 167 (394)
T PRK03699 151 AAYLLARSIEWYWVYAC 167 (394)
T ss_pred HHHHHhccccHHHHHHH
Confidence 8887754 455544433
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.9e-10 Score=112.61 Aligned_cols=171 Identities=15% Similarity=0.095 Sum_probs=122.3
Q ss_pred HHHHHHHhhchhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHH
Q 035548 287 FIHMLQQLTGINVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVI 366 (518)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (518)
.+..+...........+.|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+..+..+..++.+.....
T Consensus 16 ~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~ 95 (471)
T PRK10504 16 AFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALS 95 (471)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444455667778999999999999999999888899999999999999999999999988777766666554431
Q ss_pred HHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhcc
Q 035548 367 LKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKM 446 (518)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 446 (518)
.+.+..+....+.+.+.+. ..+....++.|.+|++.|+++.|+.+....++..++|.+.+.+.+..
T Consensus 96 -------------~~~~~l~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~ 161 (471)
T PRK10504 96 -------------GTLNELLLARVLQGVGGAM-MVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYA 161 (471)
T ss_pred -------------CCHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhc
Confidence 2233333333344333332 23455566789999999999999999999999999999999999988
Q ss_pred chh-hHHHHHHHHHHHHHHHHhcccC
Q 035548 447 RWG-IFFFFTGWLLISLIFSATMLPE 471 (518)
Q Consensus 447 ~~~-~~~~~~~~~~~~~~~~~~~~~~ 471 (518)
++. .+.+...+..+..+......|+
T Consensus 162 gw~~~f~~~~~~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 162 SWHWIFLINIPVGIIGAIATLMLMPN 187 (471)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 865 4444444444444444444444
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.8e-10 Score=109.13 Aligned_cols=162 Identities=11% Similarity=0.027 Sum_probs=113.6
Q ss_pred hHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCC
Q 035548 298 NVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTM 377 (518)
Q Consensus 298 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (518)
.......|.+.+++|.++.+.++......++..++.++.|+++||+|||+.+..+.....++.+.....
T Consensus 25 ~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~----------- 93 (394)
T PRK11652 25 TIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA----------- 93 (394)
T ss_pred HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-----------
Confidence 344445677888999999999999999999999999999999999999999988877777666655432
Q ss_pred CCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHH-HHH
Q 035548 378 PTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWGIFFF-FTG 456 (518)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 456 (518)
.+.+..++...+.+.+.+. ..+....+..|.++.+.++.+.++.+....++..++|.+.+.+.+..++...+. .+.
T Consensus 94 --~~~~~l~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~ 170 (394)
T PRK11652 94 --HSLTVLIAASAIQGLGTGV-GGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLL 170 (394)
T ss_pred --ccHHHHHHHHHHHHhhhhH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 1222222332333322221 123444556788888899999999999999999999999999888777654433 333
Q ss_pred HHHHHHHHHHhcccCCC
Q 035548 457 WLLISLIFSATMLPETK 473 (518)
Q Consensus 457 ~~~~~~~~~~~~~~~~~ 473 (518)
...+..+...++.||++
T Consensus 171 ~~~~~~~~~~~~~~~~~ 187 (394)
T PRK11652 171 LGAGVTFSMARWMPETR 187 (394)
T ss_pred HHHHHHHHHHHhCCccC
Confidence 34444444445566643
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.6e-10 Score=108.06 Aligned_cols=162 Identities=12% Similarity=-0.023 Sum_probs=118.1
Q ss_pred hhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCC
Q 035548 297 INVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNT 376 (518)
Q Consensus 297 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (518)
........|.+.+++|.+..+.++..+...++..++.++.|++.||+|||+.+..+..+.+++.++....
T Consensus 19 ~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~---------- 88 (382)
T PRK10091 19 EFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS---------- 88 (382)
T ss_pred HHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh----------
Confidence 3455667788888999999999999999999999999999999999999999999888888877766552
Q ss_pred CCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchhh-HHHHH
Q 035548 377 MPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWGI-FFFFT 455 (518)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 455 (518)
++.+..++.-.+.+.+.+.. .+....+..|.+|+++|+.+.++......++..+++.+.+.+.+..++.. +.+.+
T Consensus 89 ---~~~~~l~~~r~l~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~ 164 (382)
T PRK10091 89 ---SSYLMLAIGRLVSGFPHGAF-FGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIA 164 (382)
T ss_pred ---CcHHHHHHHHHHHHhhhHHH-HHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHH
Confidence 23333333333333333322 23334567888999999999999998889999999999998888777654 34334
Q ss_pred HHHHHHHHHHHhcccCC
Q 035548 456 GWLLISLIFSATMLPET 472 (518)
Q Consensus 456 ~~~~~~~~~~~~~~~~~ 472 (518)
.+..+..+......|+.
T Consensus 165 ~~~~~~~~~~~~~lp~~ 181 (382)
T PRK10091 165 VFNIAVLASIYFWVPDI 181 (382)
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 43444444444456654
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.7e-11 Score=118.02 Aligned_cols=160 Identities=18% Similarity=0.085 Sum_probs=111.1
Q ss_pred HhHHHHHHHcCCC--------ChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhccc
Q 035548 302 FYAPVLFQTMGYG--------SNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLT 373 (518)
Q Consensus 302 ~~~~~~~~~~g~~--------~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (518)
...+....+.+++ ..+.++..+...++..++.++.|+++||+|||+.+..+..+..++.++.....
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~------ 122 (481)
T TIGR00879 49 GALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAA------ 122 (481)
T ss_pred hhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhc------
Confidence 3344444455554 78899999999999999999999999999999999988888777776665431
Q ss_pred CCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHh---HHHHhccchhh
Q 035548 374 TNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAF---LSMLCKMRWGI 450 (518)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 450 (518)
.....+..++.-.+.+.+.+.. .+....++.|.+|++.|+.+.++.+....+|..+++.+. +...+..++..
T Consensus 123 ----~~~~~~~~~~~r~l~G~~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~ 197 (481)
T TIGR00879 123 ----FALSVEMLIVGRVLLGIGVGIA-SALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRI 197 (481)
T ss_pred ----cccchHHHHHHHHHHHhhhhHH-HhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHH
Confidence 1122223333334444443332 345567789999999999999999999999999999988 44444556554
Q ss_pred HHHHHHHHHHHHHHHHhcccCC
Q 035548 451 FFFFTGWLLISLIFSATMLPET 472 (518)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~ 472 (518)
.+.+.++..+..++..+++||+
T Consensus 198 ~f~~~~~~~~~~~~~~~~l~~~ 219 (481)
T TIGR00879 198 PLGLQLIPAGLLFLGLFFLPES 219 (481)
T ss_pred HHHHHHHHHHHHHHHHhcCCCC
Confidence 4444444444455555566665
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=5e-10 Score=108.67 Aligned_cols=147 Identities=16% Similarity=0.079 Sum_probs=113.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHhhhhhhcccchh
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQ-NLGMLIAGRLSLGIGVGFGNQAV 153 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~ 153 (518)
|.+..+.+...+.+.++..++.++.|++.||+|||+.+..+..+..++.++....+ +...+ .-++.|++.+...+..
T Consensus 236 g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g~g~g~~~~~~ 313 (393)
T PRK09705 236 GASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCGLGLGGAFPLC 313 (393)
T ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHHHhccchHHHH
Confidence 78899999999999999999999999999999999999998888777766554333 32222 2346788888888877
Q ss_pred hhHHHhcCC-CCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHH-hhcccCCh
Q 035548 154 PLFISEIAP-PKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLG-SCIIVETP 224 (518)
Q Consensus 154 ~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p 224 (518)
.....+..+ +++|++..++.+....++..++|.+.+.+.+..+ +|...|.+.++.+++..+. ..+.||++
T Consensus 314 ~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (393)
T PRK09705 314 LLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG-NYLMDWAFHALCVVGLMIITLRFAPARF 385 (393)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHHHHHHHHhccccc
Confidence 777777775 5678999999999999999999999877765432 4788888877766664443 45566654
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-09 Score=107.35 Aligned_cols=165 Identities=16% Similarity=0.130 Sum_probs=115.0
Q ss_pred HhhchhHHHHhHHHHHHHcCCCChH-----HHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHH
Q 035548 293 QLTGINVVMFYAPVLFQTMGYGSNA-----SLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVIL 367 (518)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (518)
..........+.|.+.++.|.+..+ .+.......+...++.++.|+++||+|||+.+..+.....++.+++...
T Consensus 26 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~- 104 (408)
T PRK09874 26 TGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLA- 104 (408)
T ss_pred HHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHH-
Confidence 3344556666788888888887654 3778888889999999999999999999999988877777666555432
Q ss_pred HHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccc
Q 035548 368 KMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMR 447 (518)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (518)
.+.+..++...+.+.+. +..+....+..+..|+++|+.+.++.+....++..+++.+.+.+.+..+
T Consensus 105 ------------~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 170 (408)
T PRK09874 105 ------------QNIWQFLILRALLGLLG--GFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYG 170 (408)
T ss_pred ------------hhHHHHHHHHHHHHHhh--hhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 12222332322333222 2234445567788999999999999999999999999999999988777
Q ss_pred hhh-HHHHHHHHHHHHHHHHhcccCC
Q 035548 448 WGI-FFFFTGWLLISLIFSATMLPET 472 (518)
Q Consensus 448 ~~~-~~~~~~~~~~~~~~~~~~~~~~ 472 (518)
+.. +++.+.+.++..+...++.+++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 171 LRPVFFITASVLFLCFLVTLFCIREN 196 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 553 4444444444444455555554
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.1e-10 Score=113.07 Aligned_cols=162 Identities=13% Similarity=0.141 Sum_probs=110.0
Q ss_pred HHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 035548 300 VMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPT 379 (518)
Q Consensus 300 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (518)
.....|.+.+ .|+++.+.++..+...++..++.++.|++.||+|||+.+..+.++.+++.+.+..... ..
T Consensus 46 ~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 115 (438)
T TIGR00712 46 FALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPW---------AT 115 (438)
T ss_pred HHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhcccc---------cc
Confidence 3445666554 6999999999999999999999999999999999999888877777776665543210 01
Q ss_pred chhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhc-cchh-hHHHHHHH
Q 035548 380 VPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCK-MRWG-IFFFFTGW 457 (518)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~ 457 (518)
.+.+.......+.+.+.+... +.....+.|.+|+++|++++++.+....+++.+++.+.+...+. .+|. .+++.+.+
T Consensus 116 ~~~~~l~~~~~l~g~~~g~~~-~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~ 194 (438)
T TIGR00712 116 SSIAIMFVLLFLNGWFQGMGW-PPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAIC 194 (438)
T ss_pred chHHHHHHHHHHHHHHhhcch-HHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 112222222233333333332 33345567899999999999999999999999999888765543 4554 44444555
Q ss_pred HHHHHHHHHhcccCC
Q 035548 458 LLISLIFSATMLPET 472 (518)
Q Consensus 458 ~~~~~~~~~~~~~~~ 472 (518)
+++..++.+++.||+
T Consensus 195 ~~i~~~~~~~~~~~~ 209 (438)
T TIGR00712 195 AIIVALFAFAMMRDT 209 (438)
T ss_pred HHHHHHHHHHhccCC
Confidence 555555555556654
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.5e-10 Score=112.64 Aligned_cols=135 Identities=18% Similarity=0.137 Sum_probs=106.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHH--HHHHh--hccHHHHHHHHHHhhhhhhccc
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGA--ILNCL--AQNLGMLIAGRLSLGIGVGFGN 150 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~--~~~~~--~~~~~~l~~~r~l~G~~~g~~~ 150 (518)
|.+..+.+.+.+...++..++.++.|+++||+|||+.+..+..+..+.. ++..+ .++.+.+.+..++.|++.+...
T Consensus 251 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 330 (394)
T TIGR00883 251 GLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYT 330 (394)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHh
Confidence 7788899999999999999999999999999999998876555444433 22222 2567777788899999999999
Q ss_pred chhhhHHHhcCCCCcchhHHhH-HHHHHHHHHHHHHHHHhhccccCCCc-chHHHHhhhHHHH
Q 035548 151 QAVPLFISEIAPPKYRGGLNIC-FQLLITVGILAANLINYGTSRIHPYG-WRISLGGAAVPAL 211 (518)
Q Consensus 151 ~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~i~~~i~~~~~~~~~~~-wr~~f~~~~~~~~ 211 (518)
+...+++.|.+|+++|+++.++ .+.+..+|..++|.+++.+.+. .| |+..++...+..+
T Consensus 331 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~--~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 331 GPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAM--TGDWYAIGYYLAALAL 391 (394)
T ss_pred hhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHH--cCcchhHHHHHHHHHH
Confidence 9999999999999999999988 4566778888999998766543 34 8877766655443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.7e-10 Score=110.54 Aligned_cols=161 Identities=15% Similarity=0.138 Sum_probs=116.3
Q ss_pred hhHHHHhHH-HHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCC
Q 035548 297 INVVMFYAP-VLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTN 375 (518)
Q Consensus 297 ~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (518)
........| .+.+++|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++.+++.+...+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--------- 82 (352)
T PF07690_consen 12 FSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA--------- 82 (352)
T ss_dssp HHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh---------
Confidence 344555566 6667889999999999999999999999999999999999999998888888884444431
Q ss_pred CCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchh-hHHHH
Q 035548 376 TMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWG-IFFFF 454 (518)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 454 (518)
.+.+..+....+.+.+.+ ...+....++.|.+|+++|++++++.+....++..+++.+.+.+.+..++. .+++.
T Consensus 83 ----~~~~~~~~~~~l~g~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~ 157 (352)
T PF07690_consen 83 ----SNFWLLLIARFLLGIGSG-FFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLIS 157 (352)
T ss_dssp ----CCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHH
T ss_pred ----hhHHHHhhhccccccccc-cccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccc
Confidence 223333334444444332 333556678899999999999999999999999999999999988777754 45555
Q ss_pred HHHHHHHHHHHHhcccC
Q 035548 455 TGWLLISLIFSATMLPE 471 (518)
Q Consensus 455 ~~~~~~~~~~~~~~~~~ 471 (518)
+.+.++..++...+.++
T Consensus 158 ~~~~~~~~il~~~~~~~ 174 (352)
T PF07690_consen 158 AILSLIAAILFILFLPE 174 (352)
T ss_dssp HHHHHHHHHHHHCCC--
T ss_pred cchhhhhhhhHhhhhhh
Confidence 55555554433344443
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.5e-10 Score=108.34 Aligned_cols=143 Identities=7% Similarity=-0.027 Sum_probs=101.6
Q ss_pred chhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCC
Q 035548 296 GINVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTN 375 (518)
Q Consensus 296 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (518)
.......+.+.+.+++|.+..+.++..+...++..++.++.|++.||+|||+.+..+..+..++.++......
T Consensus 28 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~------- 100 (402)
T TIGR00897 28 GDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGL------- 100 (402)
T ss_pred hhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhc-------
Confidence 3344555667777889999999999999999999999999999999999999999888887777654422110
Q ss_pred CCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHH-HHHHHHhHHHHhccch
Q 035548 376 TMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFT-FVIAQAFLSMLCKMRW 448 (518)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~ 448 (518)
...+.+..+....+.+.+.... .+.......+..|+++|++++|+.+....++. .+++.+.+.+.+..++
T Consensus 101 --~~~~~~~l~~~~~i~G~g~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~ 171 (402)
T TIGR00897 101 --GHANYPLILLFYGIRGLGYPLF-AYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGE 171 (402)
T ss_pred --cCccHHHHHHHHHHHHcchHHH-HhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccch
Confidence 1122222233333333332222 22333456788899999999999999988886 5788888888877763
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.4e-10 Score=108.12 Aligned_cols=160 Identities=13% Similarity=0.100 Sum_probs=114.1
Q ss_pred HHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 035548 300 VMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPT 379 (518)
Q Consensus 300 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (518)
...-.|.+.++++.+..+.+...+.+.++..++.++.|+++||+|||+.+..+..+..++.+.....
T Consensus 35 ~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a------------- 101 (413)
T PRK15403 35 IQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT------------- 101 (413)
T ss_pred hccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc-------------
Confidence 3334556667889999999999999999999999999999999999999998887777766665542
Q ss_pred chhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchhh-HHHHHHHH
Q 035548 380 VPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWGI-FFFFTGWL 458 (518)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 458 (518)
.+.+..++.-.+.+.+.+. ..+....+..|.+|++++++++++.+....++..++|.+.+.+.+..+|.. +++.+.+.
T Consensus 102 ~~~~~l~~~r~l~Gi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~ 180 (413)
T PRK15403 102 TSMTQFLIARFIQGTSICF-IATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMG 180 (413)
T ss_pred CCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 2222333333333333221 223445667899999999999999999999999999999998888777654 44444444
Q ss_pred HHHHHHHHhcccCCC
Q 035548 459 LISLIFSATMLPETK 473 (518)
Q Consensus 459 ~~~~~~~~~~~~~~~ 473 (518)
++..+..++..||++
T Consensus 181 ~i~~~~~~~~lp~~~ 195 (413)
T PRK15403 181 LIAFVGLLLAMPETV 195 (413)
T ss_pred HHHHHHHHHhCCCCc
Confidence 444444445567654
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.2e-10 Score=110.78 Aligned_cols=162 Identities=14% Similarity=0.141 Sum_probs=107.1
Q ss_pred HHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 035548 300 VMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPT 379 (518)
Q Consensus 300 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (518)
+....|++.++ |++..+.++..+...++..++.++.|+++||+|||+.+..+.++..++.+.+.+... ..
T Consensus 48 ~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~---------~~ 117 (452)
T PRK11273 48 FALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW---------AT 117 (452)
T ss_pred HHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhc---------cc
Confidence 44566776666 999999999999999999999999999999999999999888887777776655310 01
Q ss_pred chhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHh-HHHHhccchh-hHHHHHHH
Q 035548 380 VPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAF-LSMLCKMRWG-IFFFFTGW 457 (518)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~ 457 (518)
.+.+..+....+.+.+.+... +.....+.|.+|++.|+++.|+.+....+++.+.+++. ..+....+|. .+++.+.+
T Consensus 118 ~~~~~~~~~~~l~gi~~g~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~ 196 (452)
T PRK11273 118 SSIAVMFVLLFLCGWFQGMGW-PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFA 196 (452)
T ss_pred ccHHHHHHHHHHHHHHHhccc-hHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 122223333333333333332 33334567889999999999999888888875544443 2332233544 44444444
Q ss_pred HHHHHHHHHhcccCC
Q 035548 458 LLISLIFSATMLPET 472 (518)
Q Consensus 458 ~~~~~~~~~~~~~~~ 472 (518)
.++..++..++.||+
T Consensus 197 ~~~~~~l~~~~~~~~ 211 (452)
T PRK11273 197 AILVALFAFAMMRDT 211 (452)
T ss_pred HHHHHHHHHHHccCC
Confidence 555455555556654
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.7e-10 Score=107.77 Aligned_cols=163 Identities=12% Similarity=0.126 Sum_probs=114.7
Q ss_pred hhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCC
Q 035548 297 INVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNT 376 (518)
Q Consensus 297 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (518)
...+....|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+..+.....++.+.....
T Consensus 29 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~---------- 98 (406)
T PRK15402 29 NDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLA---------- 98 (406)
T ss_pred hhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH----------
Confidence 3444445666778899999999999999999999999999999999999999988887777776665442
Q ss_pred CCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchh-hHHHHH
Q 035548 377 MPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWG-IFFFFT 455 (518)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 455 (518)
.+.+..+....+.+.+.+. ..+.....+.|.+|++.|.++.++......++..++|.+.+.+.+..++. .+++.+
T Consensus 99 ---~~~~~l~~~~~l~G~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~ 174 (406)
T PRK15402 99 ---QSIEQFTLLRFLQGIGLCF-IGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFA 174 (406)
T ss_pred ---ccHHHHHHHHHHHHhHhhh-HHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHH
Confidence 1222223332332322222 22344566789999999999999988888889999999999988877755 444444
Q ss_pred HHHHHHHHHHHhcccCCC
Q 035548 456 GWLLISLIFSATMLPETK 473 (518)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~ 473 (518)
.+.++..+..+...||++
T Consensus 175 ~~~~~~~~~~~~~~~~~~ 192 (406)
T PRK15402 175 ALAALSFFGLWRAMPETA 192 (406)
T ss_pred HHHHHHHHHHHHhCCCCC
Confidence 444444444444556553
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.4e-10 Score=107.99 Aligned_cols=151 Identities=14% Similarity=0.090 Sum_probs=131.8
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccH--HHHHHHHHHHHHHHHHHHh--------hccHHHHHHHHH
Q 035548 71 DNYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRK--PTIQAASVFFLIGAILNCL--------AQNLGMLIAGRL 140 (518)
Q Consensus 71 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr--~~l~~~~~l~~~~~~~~~~--------~~~~~~l~~~r~ 140 (518)
++++|++..+...+.-+..+..++|++++|++.||+|.| ++++.+++++.+..+...+ .++.+.+.+.-+
T Consensus 309 ~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~ 388 (477)
T PF11700_consen 309 TEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAV 388 (477)
T ss_pred HHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHH
Confidence 445699999999999999999999999999999999999 9999999888766666555 678889999999
Q ss_pred HhhhhhhcccchhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcc
Q 035548 141 SLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCII 220 (518)
Q Consensus 141 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 220 (518)
+.|+..|..++...++.+|..|+++.+..+|++....-....+||++-+.+....+ +-|+.+....++.++.+++.+++
T Consensus 389 ~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg-~~r~g~~~l~~lf~~gl~ll~~v 467 (477)
T PF11700_consen 389 LIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG-SQRYGFLFLLVLFLIGLILLFFV 467 (477)
T ss_pred HHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchhHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999777665542 57888888777777777777666
Q ss_pred cC
Q 035548 221 VE 222 (518)
Q Consensus 221 ~e 222 (518)
+.
T Consensus 468 ~~ 469 (477)
T PF11700_consen 468 DV 469 (477)
T ss_pred cc
Confidence 54
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.5e-09 Score=105.88 Aligned_cols=148 Identities=14% Similarity=0.070 Sum_probs=105.2
Q ss_pred hHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchh
Q 035548 303 YAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPA 382 (518)
Q Consensus 303 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (518)
..|.+.+++|.++.+.++..+...++..++.++.|+++||+|||+.+..+..+..++.+..... .+.
T Consensus 28 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------------~~~ 94 (401)
T PRK11043 28 AFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV-------------ESA 94 (401)
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh-------------cCH
Confidence 3445567889999999999999999999999999999999999999988877777666655442 222
Q ss_pred HHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchhhH-HHHHHHHHHH
Q 035548 383 KVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWGIF-FFFTGWLLIS 461 (518)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 461 (518)
+..++...+.+.+.+.. .+....+..|.+|++.++...+..+....++..++|.+.+.+.+..++... ++...+.++.
T Consensus 95 ~~l~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~ 173 (401)
T PRK11043 95 AQLLVLRFVQAVGVCSA-AVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLL 173 (401)
T ss_pred HHHHHHHHHHHhhhHHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 22333223322222211 123345678899999889899988888899999999999999988886543 3344444443
Q ss_pred HHH
Q 035548 462 LIF 464 (518)
Q Consensus 462 ~~~ 464 (518)
.+.
T Consensus 174 ~~~ 176 (401)
T PRK11043 174 ILP 176 (401)
T ss_pred HHH
Confidence 333
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.9e-09 Score=107.19 Aligned_cols=138 Identities=9% Similarity=-0.020 Sum_probs=96.5
Q ss_pred HHHHhhchhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHH
Q 035548 290 MLQQLTGINVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKM 369 (518)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (518)
++...........+.|.+.+++|++..+.++..+...++..++.++.|++.||+|||+.+..+.+..+++.++..+.
T Consensus 45 ~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~--- 121 (476)
T PLN00028 45 FFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV--- 121 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh---
Confidence 33333334445556777888999999999998888889999999999999999999999888777777666555442
Q ss_pred hcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHH
Q 035548 370 FLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSM 442 (518)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 442 (518)
.+.+..++...+.+.+.+. ..+ ...++.|.+|++.|+.++|+.+....++..+++.+.+.+
T Consensus 122 ----------~s~~~l~~~r~l~G~~~~~-~~~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i 182 (476)
T PLN00028 122 ----------SSATGFIAVRFFIGFSLAT-FVS-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLV 182 (476)
T ss_pred ----------cCHHHHHHHHHHHHHHHHh-hHH-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222222222333333222 222 234568999999999999999888888887777666544
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.3e-10 Score=105.19 Aligned_cols=161 Identities=10% Similarity=-0.005 Sum_probs=112.6
Q ss_pred hHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCC
Q 035548 298 NVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTM 377 (518)
Q Consensus 298 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (518)
..+....|.+.+++|.+..+.++..+.+.++..++.+..|++.||+|||+++.........+.. ...
T Consensus 8 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~-~~~------------ 74 (368)
T TIGR00903 8 VTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAG-RLL------------ 74 (368)
T ss_pred HHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH-HHH------------
Confidence 4456677888899999999999999999999999999999999999998876544333322221 111
Q ss_pred CCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHH-HH
Q 035548 378 PTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFF-TG 456 (518)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 456 (518)
...+....+..-.+.+.+.+. ........+|.+|+++|++++++.+....+|..+++.+.+.+.+..+|...+.. +.
T Consensus 75 ~~~~~~~l~~~R~l~G~g~~~--~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~ 152 (368)
T TIGR00903 75 DPFNYEWLLACQLLAALGQPF--LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAA 152 (368)
T ss_pred HhccHHHHHHHHHHHHhHhHH--HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 112223333333333333322 222334458899999999999999999999999999999999888887754444 55
Q ss_pred HHHHHHHHHHhcccCCC
Q 035548 457 WLLISLIFSATMLPETK 473 (518)
Q Consensus 457 ~~~~~~~~~~~~~~~~~ 473 (518)
+.++..++.++++||.+
T Consensus 153 l~~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 153 VAAAGIILVLAALPALP 169 (368)
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 55565666666677643
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.8e-10 Score=107.96 Aligned_cols=160 Identities=12% Similarity=0.122 Sum_probs=118.2
Q ss_pred HHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCC
Q 035548 299 VVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMP 378 (518)
Q Consensus 299 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (518)
......|.+.+++|.++.+.++..+...++..++.++.|++.||+|||+.+..+..+..++...+...
T Consensus 9 ~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~------------ 76 (377)
T PRK11102 9 MYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA------------ 76 (377)
T ss_pred HHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH------------
Confidence 34456677788899999999999999999999999999999999999999998888887777776542
Q ss_pred CchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchhh-HHHHHHH
Q 035548 379 TVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWGI-FFFFTGW 457 (518)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 457 (518)
.+.+.......+.+.+.+. ..+....++.|.+|++.|+++.++.+....++..++|.+.+.+.+..++.. +++.+.+
T Consensus 77 -~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 154 (377)
T PRK11102 77 -QTIDQLIYMRFLHGLAAAA-ASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALA 154 (377)
T ss_pred -ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 1222333333333333322 223445678899999999999999999999999999999999988877644 4444444
Q ss_pred HHHHHHHHHhcccCC
Q 035548 458 LLISLIFSATMLPET 472 (518)
Q Consensus 458 ~~~~~~~~~~~~~~~ 472 (518)
..+..+...+..||+
T Consensus 155 ~~~~~~~~~~~~~~~ 169 (377)
T PRK11102 155 AILAAALVFFFIPET 169 (377)
T ss_pred HHHHHHHHHHhCCcc
Confidence 555545555555554
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.7e-09 Score=107.24 Aligned_cols=173 Identities=13% Similarity=0.139 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHhhchhHHHHhHHHHH-HHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhc-cCChHHHHHhHHHHHHHH
Q 035548 283 ICGTFIHMLQQLTGINVVMFYAPVLF-QTMGYGSNASLLSAVISGTINVASTLVAIVLVDK-AGRKILLVQAAIQMIICQ 360 (518)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~ 360 (518)
+..+...+. ....++....+.+.|+ +++|++..++.+....+.....+..+++|+++|| +|||+.+..+.++..++.
T Consensus 17 ~~~~~~~~~-er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~ 95 (489)
T PRK10207 17 FMIFFVELW-ERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGY 95 (489)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHH
Confidence 333334433 3344555665666565 5689999988888888887888888899999999 999999999999999888
Q ss_pred HHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChh--hhhhHHHHHHHHHHHHHHHHHHH
Q 035548 361 CAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLE--TRNAGYFFAVSTNMVFTFVIAQA 438 (518)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~r~~~~g~~~~~~~~~~~~~~~~ 438 (518)
+.+.+. ........+...+.+.+.+ ...|....++.|.+|++ +|+.++++.....++|..++|.+
T Consensus 96 ~~~~~~------------~~~~~ll~~~~~l~~ig~g-~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l 162 (489)
T PRK10207 96 FMTGMS------------LLKPDLIFIALGTIAVGNG-LFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSL 162 (489)
T ss_pred HHHHHh------------ccchhHHHHHHHHHHhccc-cccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHH
Confidence 777653 1111222222333333322 23345567789999877 45778999999999999999999
Q ss_pred hHHHHhccchhhHHHHHHHHHHHHHHHHhcc
Q 035548 439 FLSMLCKMRWGIFFFFTGWLLISLIFSATML 469 (518)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (518)
.+.+.++.+|...+....+..+..++.+...
T Consensus 163 ~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~ 193 (489)
T PRK10207 163 APVIADKFGYSVTYNLCGAGLIIALLVYFAC 193 (489)
T ss_pred HHHHHHhhChHHHHHHHHHHHHHHHHHHHHc
Confidence 9999998887655544544444444444433
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.6e-09 Score=106.30 Aligned_cols=153 Identities=22% Similarity=0.159 Sum_probs=105.0
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHH
Q 035548 313 YGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVF 392 (518)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (518)
.+..+.+++.....++.+++.++.+++.||+|||+.+..+.++..++.++...... ..+....+..++.-.+.
T Consensus 53 ~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~-------~~~~~~~~~~~~~r~l~ 125 (502)
T TIGR00887 53 LPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPG-------SSPKSVMATLCFWRFWL 125 (502)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccC-------cccchHHHHHHHHHHHH
Confidence 34556678889999999999999999999999999998888877777766554210 00000122333333344
Q ss_pred HHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHh-----------------------ccchh
Q 035548 393 VAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLC-----------------------KMRWG 449 (518)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~ 449 (518)
+.+.+.. .+....+..|.+|++.|+++.++.+....+|..+++.+...+.. ..+|.
T Consensus 126 G~~~g~~-~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR 204 (502)
T TIGR00887 126 GVGIGGD-YPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWR 204 (502)
T ss_pred HHHHhhh-hHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHH
Confidence 4443333 34556889999999999999999999999999888887765432 12455
Q ss_pred hHHHHHHHHHHHHHHHHhcccCCC
Q 035548 450 IFFFFTGWLLISLIFSATMLPETK 473 (518)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~ 473 (518)
..+.+.++..+...+..+++||+.
T Consensus 205 ~~~~~~~ip~~i~~~~~~~lpESp 228 (502)
T TIGR00887 205 ILIGFGAVPALLALYFRLTIPETP 228 (502)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCH
Confidence 555555555555555566788863
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.5e-09 Score=105.28 Aligned_cols=155 Identities=10% Similarity=0.031 Sum_probs=109.6
Q ss_pred HHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 035548 300 VMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPT 379 (518)
Q Consensus 300 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (518)
.....+.+.++.+.+..+.++....+.+...+..++.|++.||+|||+++..+..+..++.+.+....
T Consensus 22 ~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~------------ 89 (393)
T PRK11195 22 LLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGI------------ 89 (393)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHH------------
Confidence 34444555678888888899999999999999999999999999999999999888777666544321
Q ss_pred chhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHH
Q 035548 380 VPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLL 459 (518)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (518)
. . +..-.+.+.+ .....|...+++.|.+|+++|++++|+.+....++..++|.+.|.+.+......+.+.. .+.
T Consensus 90 ~-~---~~~r~l~G~~-~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~-~~~ 163 (393)
T PRK11195 90 H-P---LLAYGLVGIG-AAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCA-LIY 163 (393)
T ss_pred H-H---HHHHHHHHHH-HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 1 1 1222222222 23344666788899999999999999999999999999999999998864222222222 222
Q ss_pred HHHHHHHhcccCC
Q 035548 460 ISLIFSATMLPET 472 (518)
Q Consensus 460 ~~~~~~~~~~~~~ 472 (518)
+...+....+||.
T Consensus 164 ~~~~~~~~~l~~~ 176 (393)
T PRK11195 164 LLAALFNLFIPRL 176 (393)
T ss_pred HHHHHHHhcCCCC
Confidence 3333344556654
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.3e-09 Score=105.39 Aligned_cols=137 Identities=14% Similarity=0.034 Sum_probs=115.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhh
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVP 154 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (518)
|.+..+.|.+.+...++..+..++.|++.||+|+|+.+..+.++.+++.++.++.++.+.+++..++.|++.+...+...
T Consensus 236 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 315 (382)
T PRK11128 236 GYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAM 315 (382)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999999999999999999999999999999999998888888899999999999999999999999999
Q ss_pred hHHHhcCCCCcchhHHhHHH-HHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHH
Q 035548 155 LFISEIAPPKYRGGLNICFQ-LLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLL 215 (518)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~-~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~ 215 (518)
.++.+. +++++++..+... ....+|..+||.+++.+.+. .|+ ..++..+++.++.++
T Consensus 316 ~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~--~g~-~~~~~~~~~~~~~~~ 373 (382)
T PRK11128 316 RYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQH--LGA-GVFWVMALVALPALF 373 (382)
T ss_pred HHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccH-HHHHHHHHHHHHHHH
Confidence 998886 5666788888876 55678889999998877653 366 456666665555443
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=4e-09 Score=101.86 Aligned_cols=152 Identities=9% Similarity=0.045 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHhhchhHHHHhHHHHHH-HcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHH
Q 035548 281 QLICGTFIHMLQQLTGINVVMFYAPVLFQ-TMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIIC 359 (518)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 359 (518)
+.+....+.+...+..........+.+.+ ++|++..+.+++.++..+...++++..|++.||+|.|+.+.++..+..+.
T Consensus 34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~ 113 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIP 113 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 44444555555444444444444555544 68999999999999999999999999999999999999999888888777
Q ss_pred HHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHh
Q 035548 360 QCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAF 439 (518)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~ 439 (518)
.+...+.... ...+.+..++...+.+.+ +..+ +.....+++.+|+++||++.|+....+++|..+++.+.
T Consensus 114 ~~~~~~a~~~--------~~~s~~~lli~r~l~Gig-g~~f-~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~ 183 (462)
T PRK15034 114 CVWLGIAVQN--------PNTPFGIFIVIALLCGFA-GANF-ASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVA 183 (462)
T ss_pred HHHHHHHHcc--------cCCCHHHHHHHHHHHHHH-HHhH-HHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHH
Confidence 7766653100 012333333333333333 2222 34556678999999999999999777777776666655
Q ss_pred HHH
Q 035548 440 LSM 442 (518)
Q Consensus 440 ~~~ 442 (518)
+.+
T Consensus 184 p~~ 186 (462)
T PRK15034 184 PLV 186 (462)
T ss_pred HHH
Confidence 443
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.1e-09 Score=97.99 Aligned_cols=175 Identities=9% Similarity=0.011 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHhhchhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHH
Q 035548 283 ICGTFIHMLQQLTGINVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCA 362 (518)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 362 (518)
+....+.+...++....+....+.+-+++|+|+.|.+++..+..+.+.+.+++.|.+.||+|.|+....+.++..+-.+.
T Consensus 16 L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~ 95 (417)
T COG2223 16 LWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLG 95 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHH
Confidence 44444444444444445555556666888999999999999999999999999999999999999999998888888877
Q ss_pred HHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHH
Q 035548 363 IGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSM 442 (518)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 442 (518)
+.+... ..+.+..+.+..+.+.+ .+...+...++++.+|++.+|.++|+.. .+++|..+...+.+.+
T Consensus 96 ~~~a~~----------~~~~~~ll~~gll~G~~--GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v 162 (417)
T COG2223 96 LAFAVT----------YPSTWQLLVIGLLLGLA--GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLV 162 (417)
T ss_pred HHHHcc----------CCchHHHHHHHHHHhcc--cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHH
Confidence 777531 22223333333222222 2222355567899999999999999998 9999999999999888
Q ss_pred Hhccc---hh-hHHHHHHHHHHHHHHHHhccc
Q 035548 443 LCKMR---WG-IFFFFTGWLLISLIFSATMLP 470 (518)
Q Consensus 443 ~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~ 470 (518)
....+ +. ...+.....++..+..++...
T Consensus 163 ~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~ 194 (417)
T COG2223 163 AVAFGFLAWRNVAGIYVVALAIAAVLAWLGMN 194 (417)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 88877 33 444455555555555555543
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.3e-09 Score=103.35 Aligned_cols=137 Identities=12% Similarity=0.043 Sum_probs=101.3
Q ss_pred hhchhHHHHhHHH-HHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcc
Q 035548 294 LTGINVVMFYAPV-LFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLL 372 (518)
Q Consensus 294 ~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (518)
+........+.|. +.+++|++..+.++......++..++.++.|+++||+|||+.+..+.++..++.+.+.+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~------ 87 (366)
T TIGR00886 14 FSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLA------ 87 (366)
T ss_pred HHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH------
Confidence 3445566777785 667889999999999999999999999999999999999999999888888887766553
Q ss_pred cCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHh
Q 035548 373 TTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLC 444 (518)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 444 (518)
..+.+..++...+.+.+ .... +....++.|.+|+++|+.+.++......+|..+++.+.+.+..
T Consensus 88 ------~~~~~~~~~~~~~~g~~-~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~ 151 (366)
T TIGR00886 88 ------VQSYSVLLLLRLFIGIA-GGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIG 151 (366)
T ss_pred ------hhhHHHHHHHHHHHHHh-chhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 10223333333333332 2222 3345677899999999999999988887888777777766554
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.8e-09 Score=93.00 Aligned_cols=146 Identities=16% Similarity=0.098 Sum_probs=116.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhh-------ccHHHHHHHHHHhhhhhh
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLA-------QNLGMLIAGRLSLGIGVG 147 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~-------~~~~~l~~~r~l~G~~~g 147 (518)
|+|++|...+.++-.+|..+ +++.|.+.|++|++.++.+|.+...++..+..++ .++|.+.+..++.|.+.+
T Consensus 33 ~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~ 111 (250)
T PF06813_consen 33 GYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSC 111 (250)
T ss_pred CCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHH
Confidence 99999999999999999987 4889999999999999999999999998777653 477888888999999888
Q ss_pred cccchhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccCCh
Q 035548 148 FGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETP 224 (518)
Q Consensus 148 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p 224 (518)
....+......+.||+ +||++.++.-...+++..+-..+.......+ .-+..+.+...+.++.++..+++++.|
T Consensus 112 ~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~~--~~~fll~la~~~~~v~l~~~~~vr~~~ 185 (250)
T PF06813_consen 112 WFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGDD--PSSFLLFLAVLPAVVCLVAMFFVRPVP 185 (250)
T ss_pred HhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCCC--hHHHHHHHHHHHHHHHHHHhhheeccC
Confidence 8778877777788985 6999999999999998888777755554332 344555555555555555556655444
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-08 Score=102.13 Aligned_cols=146 Identities=14% Similarity=0.105 Sum_probs=114.0
Q ss_pred CCChhHHHHHHH-HHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHH---Hhh-ccHHHHHHHHHHhhhhhhcc
Q 035548 75 KYDNQYLQLFTS-SLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILN---CLA-QNLGMLIAGRLSLGIGVGFG 149 (518)
Q Consensus 75 ~~s~~~~~~~~s-~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~---~~~-~~~~~l~~~r~l~G~~~g~~ 149 (518)
|++..+.+++.. ...++..++.+++|+++||+|+|+.+.++.++..++.++. +.. ++.+.+.+.-++..++.|..
T Consensus 254 G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~ 333 (491)
T PRK11010 254 GFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMG 333 (491)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 889999999974 5568999999999999999999998877666555544322 233 45555566667766666666
Q ss_pred cchhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccC
Q 035548 150 NQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVE 222 (518)
Q Consensus 150 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 222 (518)
.+...++..+..+++.+++..++.+...++|..+++.+++.+.+ ..||+..|.+.++.+++.++...++++
T Consensus 334 ~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~--~~G~~~~f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 334 TAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVE--AHGWPTFYLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67778899999999999999999999999998888777766654 358999999988888887766666554
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.10 E-value=8e-10 Score=110.04 Aligned_cols=150 Identities=13% Similarity=-0.043 Sum_probs=107.3
Q ss_pred HcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHH
Q 035548 310 TMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILV 389 (518)
Q Consensus 310 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (518)
+++++..+.+.+...+.++..++.++.|++.||+|+|+.+..+.++..++.++..... ....+..++.-
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~r 138 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA-----------GGGIALVVFCR 138 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH-----------HcCchHHHHHH
Confidence 4678888999999999999999999999999999999999888877777666554321 11122223233
Q ss_pred HHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhcc-chh-hHHHHHHHHHHHHHHHHh
Q 035548 390 CVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKM-RWG-IFFFFTGWLLISLIFSAT 467 (518)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~ 467 (518)
++.+.+ .....+....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+.. ++. .+.+.++..++..++.+.
T Consensus 139 ~~~G~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~ 217 (465)
T TIGR00894 139 VIQGLA-QGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFV 217 (465)
T ss_pred HHHHHh-cccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHH
Confidence 333333 33334566678899999999999999999999999999999999998874 765 444444444444444444
Q ss_pred cccC
Q 035548 468 MLPE 471 (518)
Q Consensus 468 ~~~~ 471 (518)
+.++
T Consensus 218 ~~~~ 221 (465)
T TIGR00894 218 FPAD 221 (465)
T ss_pred HhcC
Confidence 4443
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.2e-10 Score=101.74 Aligned_cols=152 Identities=16% Similarity=0.137 Sum_probs=133.4
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhccc
Q 035548 71 DNYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGN 150 (518)
Q Consensus 71 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 150 (518)
.+++|++..+..++.....+..+++++++|+|.||+|.|+++..++++..+.++...+...-..+.++-.+.|...|+.+
T Consensus 280 ~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~q 359 (438)
T COG2270 280 AADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQ 359 (438)
T ss_pred HHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHH
Confidence 44569999999999999999999999999999999999999999999999999888888777778888899999999999
Q ss_pred chhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccCC
Q 035548 151 QAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVET 223 (518)
Q Consensus 151 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~ 223 (518)
..+.++..+..|+++-++.+|+++...-.+..+||.+-+......+ +-|.-+....++.++.+++.+++|+.
T Consensus 360 A~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg-~~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 360 ASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITG-SSRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhc-chhhHHHHHHHHHHhhHhhEEeecCC
Confidence 9999999999999999999999999999999999998776665553 46777776666666666677776653
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.5e-09 Score=103.74 Aligned_cols=151 Identities=15% Similarity=0.112 Sum_probs=103.3
Q ss_pred HhhchhHHHHhHHHHH-HHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhc-cCChHHHHHhHHHHHHHHHHHHHHHHHh
Q 035548 293 QLTGINVVMFYAPVLF-QTMGYGSNASLLSAVISGTINVASTLVAIVLVDK-AGRKILLVQAAIQMIICQCAIGVILKMF 370 (518)
Q Consensus 293 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (518)
...+++.+..+.+.++ +++|++..+++..............+++|++.|| +|||+.+..+.++..++..++.+.
T Consensus 33 ~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~---- 108 (500)
T PRK09584 33 ERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWS---- 108 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh----
Confidence 3345556666777776 6789998888777776665555556789999999 599999999988888776666542
Q ss_pred cccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhh--hhhHHHHHHHHHHHHHHHHHHHhHHHHhccch
Q 035548 371 LLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLET--RNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRW 448 (518)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (518)
....+...+...+.+.+.+. ..+....+..|.+|++. |..+.++.+...++|..++|.+.+++.+..++
T Consensus 109 --------~~~~~~l~~~~~l~gig~g~-~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~ 179 (500)
T PRK09584 109 --------GHDAGIVYMGMATIAVGNGL-FKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGW 179 (500)
T ss_pred --------cccHHHHHHHHHHHHHhhhc-ccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCH
Confidence 11222222222333333332 23444567789887643 45678888999999999999999999998887
Q ss_pred hhHHHHHH
Q 035548 449 GIFFFFTG 456 (518)
Q Consensus 449 ~~~~~~~~ 456 (518)
...+...+
T Consensus 180 ~~~F~i~~ 187 (500)
T PRK09584 180 SVAFALSV 187 (500)
T ss_pred HHHHHHHH
Confidence 65444444
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.4e-08 Score=96.50 Aligned_cols=160 Identities=12% Similarity=0.087 Sum_probs=121.8
Q ss_pred hHHHHhHHHHHHHcCCCChH-HHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCC
Q 035548 298 NVVMFYAPVLFQTMGYGSNA-SLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNT 376 (518)
Q Consensus 298 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (518)
....+..|++.+++|++..+ .+.+...+..+..+..+++|++.||+|.|+.+..+.+...+..+++++.
T Consensus 43 ~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa---------- 112 (511)
T TIGR00806 43 PGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG---------- 112 (511)
T ss_pred chHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH----------
Confidence 34555677777899999999 9999999999999999999999999999999999888888888877763
Q ss_pred CCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchh---hHHH
Q 035548 377 MPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWG---IFFF 453 (518)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 453 (518)
.......+.=++++.+-+..+ ..+.++...+|+++|++++|+.+....+|.++++++.+. ....++. ....
T Consensus 113 ---~Sl~~L~i~R~llGvaEA~~~--A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~ 186 (511)
T TIGR00806 113 ---TSVWHMQLMEVFYSVTMAARI--AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNI 186 (511)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHH
Confidence 123333344444444444333 455778899999999999999999999999999999999 4455543 3344
Q ss_pred HHHHHHHHHHHHHhcccCCC
Q 035548 454 FTGWLLISLIFSATMLPETK 473 (518)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~ 473 (518)
+.....+.+++..+++|..+
T Consensus 187 Isl~s~~~a~~~a~~LP~~~ 206 (511)
T TIGR00806 187 ISLVFMTFSVFLALFLKRPK 206 (511)
T ss_pred HHHHHHHHHHHHHHhCCCCc
Confidence 45555566666667777443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.3e-09 Score=104.38 Aligned_cols=140 Identities=12% Similarity=0.104 Sum_probs=117.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhh
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVP 154 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (518)
+.+..+.|.+.++..+...++.+..|++.||+|||+.+.++.++.++...+...+++.+.+++.+++.|++.........
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566789999999999999999999999999999999999999888888878889999999999999998877766777
Q ss_pred hHHHhcCCCCcchhHHhH-HHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHH
Q 035548 155 LFISEIAPPKYRGGLNIC-FQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLG 216 (518)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~-~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~ 216 (518)
.++.+..+++.+++..+. .+....+|..+++.+++.+.+. .||+..|.+.++..++..+.
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~--~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDS--IGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHh--cccHHHHHHHHHHHHHHHHH
Confidence 788888888888777665 6678899999999998777553 48999999988887765444
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-08 Score=99.64 Aligned_cols=138 Identities=9% Similarity=-0.018 Sum_probs=105.3
Q ss_pred chhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCC
Q 035548 296 GINVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTN 375 (518)
Q Consensus 296 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (518)
.........|.+.+++|.+..+.++..+...++..++++..+++.||+|||+.+..+..+.+++.+++....
T Consensus 18 ~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~-------- 89 (410)
T TIGR00885 18 ANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAA-------- 89 (410)
T ss_pred HHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH--------
Confidence 344555677888889999999999999999999999999999999999999999999998888877654321
Q ss_pred CCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHh
Q 035548 376 TMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLC 444 (518)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 444 (518)
...+.+..+....+.+.+.+... +....++.+..|++.|++..++.+....+|..+++.+.+.+..
T Consensus 90 --~~~~~~~~l~~~~l~G~g~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~ 155 (410)
T TIGR00885 90 --EIMNYTLFLVGLFILTAGLGFLE-TAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLIL 155 (410)
T ss_pred --hhccHHHHHHHHHHHHhhHHHHH-hhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11223333344444444444332 2334556788899999999999999999999999999887753
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.05 E-value=4e-09 Score=106.36 Aligned_cols=136 Identities=17% Similarity=0.077 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccH--HHHHHHHHHhhhhhhcccchhhhHHHhcCC
Q 035548 85 TSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNL--GMLIAGRLSLGIGVGFGNQAVPLFISEIAP 162 (518)
Q Consensus 85 ~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~--~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~ 162 (518)
.....+...++.++.+++.||+|||+.+.++.++.+++.++..+.++. +...+.-++.+++.+..++....+..|.+|
T Consensus 361 ~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 440 (505)
T TIGR00898 361 LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYP 440 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 334556777888999999999999999999999999888888776644 555566677777788888889999999999
Q ss_pred CCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccCCh
Q 035548 163 PKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETP 224 (518)
Q Consensus 163 ~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p 224 (518)
++.|++++++.+....+|.+++|.+.+ ... .++..++++.++..++..+..+++||+.
T Consensus 441 ~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 441 TVVRNLGVGVCSTMARVGSIISPFLVY-LGE---KWLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred HHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH---HHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 999999999999999999999999876 322 3577788888888888777777888764
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.2e-09 Score=105.07 Aligned_cols=140 Identities=17% Similarity=0.189 Sum_probs=125.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhh
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVP 154 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (518)
|.+....|++.+++.+|..+|+++.+++.+|+++++.+..+.++++++.+..+++++.+..++.-++.|++.....+...
T Consensus 250 ~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~ 329 (524)
T PF05977_consen 250 GGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLN 329 (524)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHH
Q 035548 155 LFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLG 216 (518)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~ 216 (518)
+.+.+..|++.|||+++++.+....+..+|.++.+.+... .|-+..+.+.++..++..++
T Consensus 330 t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~--~g~~~al~~a~~~lll~~~~ 389 (524)
T PF05977_consen 330 TLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADH--FGVRTALLIAGAALLLSALI 389 (524)
T ss_pred HHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999997776543 47888887777655554333
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.5e-09 Score=109.23 Aligned_cols=162 Identities=9% Similarity=-0.170 Sum_probs=113.7
Q ss_pred HHHHHHHHHHhhchhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHH
Q 035548 284 CGTFIHMLQQLTGINVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAI 363 (518)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 363 (518)
+...+..+.............+.+.++++++..+.|++.+.+.++..++.++.+++.||.+||+.+.++.++.+++.+++
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~ 115 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL 115 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence 33333444443334455555677778889999999999999999999999999999999999999999999999998887
Q ss_pred HHHHHHhcccCC----------------------------------CCC-C--chhHHHHHHHHHHHHhhhcccccccee
Q 035548 364 GVILKMFLLTTN----------------------------------TMP-T--VPAKVVVILVCVFVAGFAWSWGPICWL 406 (518)
Q Consensus 364 ~~~~~~~~~~~~----------------------------------~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (518)
++.......... ... . ...+..+++.-+..+.......+....
T Consensus 116 alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~ 195 (633)
T TIGR00805 116 SLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGIS 195 (633)
T ss_pred hChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCch
Confidence 765322100000 000 0 011222222222222223334456678
Q ss_pred eecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhc
Q 035548 407 ISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCK 445 (518)
Q Consensus 407 ~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 445 (518)
++.|.+|++.|+...|+.+....+|..+++.+.+.+.+.
T Consensus 196 ~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~ 234 (633)
T TIGR00805 196 YIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQI 234 (633)
T ss_pred hhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 899999999999999999999999999999999988754
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.4e-10 Score=106.14 Aligned_cols=182 Identities=12% Similarity=-0.039 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHhhchhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHH
Q 035548 283 ICGTFIHMLQQLTGINVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCA 362 (518)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 362 (518)
....++....+..--+.+..-.+...+.++.++...|++.....+...+++++.|++.||++|++++.++..+-.++.++
T Consensus 35 l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~ 114 (493)
T KOG1330|consen 35 LVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFA 114 (493)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHH
Confidence 33344444433333334444445555567999999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHH
Q 035548 363 IGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSM 442 (518)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 442 (518)
.++. ...|...+.=.+.+.+ ...+.|+...+++|.+|.++|++.+++.+.....|..+|-.....+
T Consensus 115 ~~fs-------------~~Fwq~~l~R~~vGiG-eAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~v 180 (493)
T KOG1330|consen 115 SGFS-------------NHFWQVLLCRGFVGIG-EASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVV 180 (493)
T ss_pred HHHH-------------HHHHHHHHHHHHhccc-hhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeee
Confidence 7763 2233333333333333 4456678888999999999999999999999999998887777777
Q ss_pred Hhccc-h-hhHHHHHHHHHHHHHHHHhcccCCCCCCHH
Q 035548 443 LCKMR-W-GIFFFFTGWLLISLIFSATMLPETKGIPID 478 (518)
Q Consensus 443 ~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (518)
.+..+ | ..+...+++.++.+++..++.+|..++..+
T Consensus 181 a~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~ 218 (493)
T KOG1330|consen 181 ASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARD 218 (493)
T ss_pred ccCccceEEEEEeehHHHHHHHHHHHhhccCccccccc
Confidence 77666 3 356666677777777777788776655333
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.2e-08 Score=99.60 Aligned_cols=167 Identities=14% Similarity=0.129 Sum_probs=112.3
Q ss_pred HhhchhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhcc-----CChH-HHHHhHHHHHHHHHHHHHH
Q 035548 293 QLTGINVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKA-----GRKI-LLVQAAIQMIICQCAIGVI 366 (518)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----~~~~-~~~~~~~~~~~~~~~~~~~ 366 (518)
+...+.....-.|.++++.|++.++.+++...... .+..++.|+++||+ |||| .+..+....+++...+.+.
T Consensus 11 ~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~ 88 (402)
T PRK11902 11 SGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFC 88 (402)
T ss_pred HhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhc
Confidence 34455667778899999999999999988666554 58889999999999 7765 5666666666666655442
Q ss_pred HHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhcc
Q 035548 367 LKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKM 446 (518)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 446 (518)
. +..+.+.......+. ..+.....+...+++.|..|+++|+++.++......++..+++.+.+.+.+..
T Consensus 89 ~----------~~~~~~~l~~~~~~~-~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~ 157 (402)
T PRK11902 89 P----------PHAALWPLAGLAVLV-AFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRV 157 (402)
T ss_pred C----------ccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcc
Confidence 1 112223222222222 23333344566678899999999999999999888999999999998888853
Q ss_pred -chhhHHHHHHHHHHHHHHHHhcccCC
Q 035548 447 -RWGIFFFFTGWLLISLIFSATMLPET 472 (518)
Q Consensus 447 -~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (518)
++...+.+.++..+...+..+..||+
T Consensus 158 ~gw~~~f~i~a~~~l~~~l~~~~~~e~ 184 (402)
T PRK11902 158 LGWGNTYLLMAGLMLAGALTTLWAPEP 184 (402)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 66544444333333333334445554
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.4e-09 Score=97.69 Aligned_cols=133 Identities=12% Similarity=0.105 Sum_probs=102.7
Q ss_pred HHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcch
Q 035548 88 LYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRG 167 (518)
Q Consensus 88 ~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~ 167 (518)
..+.-.-|.++.+++.||+|||+.|..+.+++++..++.....+-....+.-|..-++..+.+.+.+.|..|.+|.+-|+
T Consensus 390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRa 469 (528)
T KOG0253|consen 390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRA 469 (528)
T ss_pred HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhh
Confidence 34567788999999999999999999999999999988777654333333333333344556678889999999999999
Q ss_pred hHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccCCh
Q 035548 168 GLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETP 224 (518)
Q Consensus 168 ~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p 224 (518)
...|..+...-+|.++.|+++ .... .+-..+..+.+...++..+...++|-++
T Consensus 470 tgvGtcSsmaRIggI~~p~iA-~~~e---~s~sl~i~vy~~~~ilagIavcffPiEt 522 (528)
T KOG0253|consen 470 TGVGTCSSMARIGGIFSPVIA-MRAE---LSTSLPIFVYGALFILAGIAVCFFPIET 522 (528)
T ss_pred cchhhhhhHHhhhhhhhhHHH-HHhc---cceeehHHHHHHHHHHHHHHheeeeecc
Confidence 999999999999999999997 2222 2345666777888888888888887544
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-08 Score=98.60 Aligned_cols=140 Identities=14% Similarity=0.039 Sum_probs=108.3
Q ss_pred CCChhHHHHHHHHHHH-HHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHh------hccHHHHHHHHHHhhhhhh
Q 035548 75 KYDNQYLQLFTSSLYL-AAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCL------AQNLGMLIAGRLSLGIGVG 147 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l-~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~------~~~~~~l~~~r~l~G~~~g 147 (518)
|++.+++|++...... ...++.++.|++.||+|+|+.+..+..+.++..+.... .++...+.....+.+++.+
T Consensus 239 G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 318 (390)
T TIGR02718 239 GWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITG 318 (390)
T ss_pred CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHH
Confidence 8999999999888764 66778899999999999999998877766433332221 2334444555666777778
Q ss_pred cccchhhhHHHhcCCC-CcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHH
Q 035548 148 FGNQAVPLFISEIAPP-KYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLG 216 (518)
Q Consensus 148 ~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~ 216 (518)
...+...+.+.+..++ +++++.+++.+...++|..++|.+++.+.+. .||+..|++.++..++..+.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~--~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 319 ITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDR--FGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HccHHHHHHHHHHHHHHHHH
Confidence 7888888888888776 7889999999999999999999998877543 48999998888776665443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-08 Score=99.77 Aligned_cols=121 Identities=16% Similarity=0.091 Sum_probs=88.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHH-H---HhhccHHHHHHHHHHhhhhhhccc
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAIL-N---CLAQNLGMLIAGRLSLGIGVGFGN 150 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~-~---~~~~~~~~l~~~r~l~G~~~g~~~ 150 (518)
|++..+.++....+.++..++.+++|+++||+|||+++..+.++..+.... . ...+++..+.+..++.|++.+...
T Consensus 270 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 349 (434)
T PRK15075 270 HLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYN 349 (434)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHH
Confidence 778888899998999999999999999999999999988765544332211 1 122444445555666677777777
Q ss_pred chhhhHHHhcCCCCcchhHHhHHHH-HHHHHHHHHHHHHhhccccC
Q 035548 151 QAVPLFISEIAPPKYRGGLNICFQL-LITVGILAANLINYGTSRIH 195 (518)
Q Consensus 151 ~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~i~~~i~~~~~~~~ 195 (518)
+....++.|.+|+++|++..++... +..++..++|.+.+.+.+..
T Consensus 350 ~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~ 395 (434)
T PRK15075 350 GAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVT 395 (434)
T ss_pred hhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhc
Confidence 7777889999999999999998544 44445677888876655443
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.3e-09 Score=100.20 Aligned_cols=154 Identities=11% Similarity=0.006 Sum_probs=111.6
Q ss_pred chhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCC
Q 035548 296 GINVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTN 375 (518)
Q Consensus 296 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (518)
+...+.+++-..+++.+..+..-|......-.+.++.-++.+++.+|+|+-+++..++.+..+=++.+..+
T Consensus 386 g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L--------- 456 (618)
T KOG3762|consen 386 GVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL--------- 456 (618)
T ss_pred HHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh---------
Confidence 34445555555678887666666777788888899999999999999999999988877776666665543
Q ss_pred CCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHH-HHHHHHHHHHhHHHHhccchh-hHHH
Q 035548 376 TMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTN-MVFTFVIAQAFLSMLCKMRWG-IFFF 453 (518)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~ 453 (518)
.+.|..+.+=.+-+..++..|..+ .+|++...|++.|.++.++..... .+|-.+|+.+.|.+.+..+.. .+.+
T Consensus 457 ----~n~W~vLPieilqgit~aliWaa~-~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~ 531 (618)
T KOG3762|consen 457 ----QNPWMVLPIEILQGITHALIWAAI-ISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRI 531 (618)
T ss_pred ----cCchheeeHHHHHHHHHHHHHHHH-HHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHH
Confidence 455555555555666666655533 478899999999999999987765 578888899999988888743 4455
Q ss_pred HHHHHHHHHH
Q 035548 454 FTGWLLISLI 463 (518)
Q Consensus 454 ~~~~~~~~~~ 463 (518)
++..+++..+
T Consensus 532 ~giAcl~~l~ 541 (618)
T KOG3762|consen 532 FGIACLVTLA 541 (618)
T ss_pred HHHHHHHHHH
Confidence 5544444433
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.7e-08 Score=97.00 Aligned_cols=159 Identities=11% Similarity=-0.002 Sum_probs=97.8
Q ss_pred HHHhhchhHHHHhHHHHHHHcC---CCChH---HHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHH
Q 035548 291 LQQLTGINVVMFYAPVLFQTMG---YGSNA---SLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIG 364 (518)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~g---~~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 364 (518)
.....-...+....|.+.++++ .+..+ .+.......++..+++++.|++.||+|||+.+..+.....++.++.+
T Consensus 32 ~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~ 111 (432)
T PRK10406 32 LVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIA 111 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHh
Confidence 3333344455556666667763 34333 23344455566669999999999999999999999998888887776
Q ss_pred HHHHHhcccCCCCCCch------hHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 035548 365 VILKMFLLTTNTMPTVP------AKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQA 438 (518)
Q Consensus 365 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~ 438 (518)
+.. +.. ....++.-.+.+.+.+ ...+....++.|.+|+++|+...++.......|..+++.+
T Consensus 112 ~~~-----------~~~~~~~~~~~~l~~~R~l~G~g~g-~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~ 179 (432)
T PRK10406 112 CLP-----------GYETIGTWAPALLLLARLFQGLSVG-GEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLV 179 (432)
T ss_pred hcC-----------CchhHHHHHHHHHHHHHHHHHhhhh-hhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 531 111 1112222222232222 2335566788999999999999888777766776666655
Q ss_pred hHHHH--------hccchhhHHHHHHHHHHH
Q 035548 439 FLSML--------CKMRWGIFFFFTGWLLIS 461 (518)
Q Consensus 439 ~~~~~--------~~~~~~~~~~~~~~~~~~ 461 (518)
...+. +..+|...+...++..+.
T Consensus 180 ~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll 210 (432)
T PRK10406 180 VVVLQQTLEDAELREWGWRIPFALGAVLAVV 210 (432)
T ss_pred HHHHHHhCCHHHHhccchHHHHHHHHHHHHH
Confidence 44332 245666555544443333
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.7e-08 Score=98.10 Aligned_cols=166 Identities=8% Similarity=0.047 Sum_probs=107.0
Q ss_pred hhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCC
Q 035548 297 INVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNT 376 (518)
Q Consensus 297 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (518)
.+.+..+.+.+.+++|++..+.+........ ...+.++.|++.||+|+|+++.++.++..++.++.++.....
T Consensus 43 ~y~fsv~s~~L~~~lgls~~~l~~i~svg~~-~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~------ 115 (591)
T PTZ00207 43 MYAFNLISGAMQARYNLTQRDLSTITTVGIA-VGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEV------ 115 (591)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhccc------
Confidence 3456677788888899999988887765333 334566789999999999999999999999988877642100
Q ss_pred CCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHH
Q 035548 377 MPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFFTG 456 (518)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (518)
-..+.+...+...+.+.+.+... +.....+.+.+| +.||.+.|+......+|+.+.+.+...+........+++.+.
T Consensus 116 -i~~s~~~l~l~r~l~G~G~~~~~-~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~v 192 (591)
T PTZ00207 116 -IEGSVVRLSVYNGLMTLGCMLFD-LGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMS 192 (591)
T ss_pred -ccCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 01223333333333333322221 223344577887 678999999999999999876665555544222345555555
Q ss_pred HHHHHHHHHHhcccCC
Q 035548 457 WLLISLIFSATMLPET 472 (518)
Q Consensus 457 ~~~~~~~~~~~~~~~~ 472 (518)
+.++.+++.+.+++..
T Consensus 193 l~~vv~ll~~~~vr~p 208 (591)
T PTZ00207 193 FALVVGILAIVFMRLP 208 (591)
T ss_pred HHHHHHHHHHhheeCC
Confidence 5555555555555443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.8e-08 Score=98.29 Aligned_cols=117 Identities=17% Similarity=0.254 Sum_probs=99.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHhhhhhhcccchhhh
Q 035548 77 DNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLA-QNLGMLIAGRLSLGIGVGFGNQAVPL 155 (518)
Q Consensus 77 s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~-~~~~~l~~~r~l~G~~~g~~~~~~~~ 155 (518)
+..+.+++.+...++..++.+++++++||+|+|+++..+.++.+++.++..+. ++.+.+.+..++.|++.+...+...+
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788888899999999999999999999999999998888887777665 46677788889999999999999999
Q ss_pred HHHhcCC-------CCcchhHHhHHHHHHHHHHHHHHHHHhhccc
Q 035548 156 FISEIAP-------PKYRGGLNICFQLLITVGILAANLINYGTSR 193 (518)
Q Consensus 156 ~i~~~~~-------~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~ 193 (518)
+++|..+ ++++|.+.++.+....+|..+++.+.+.+..
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~ 379 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILG 379 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998865 4557999999999999999999988776543
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.6e-09 Score=86.26 Aligned_cols=134 Identities=17% Similarity=0.167 Sum_probs=93.5
Q ss_pred HHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccc
Q 035548 323 VISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGP 402 (518)
Q Consensus 323 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (518)
....++.+++.++.+++.||++||+.+..+.....++.+..... .+.+.......+.+.+.+. ..+
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~-~~~ 70 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS-------------SNITVLIIARFLQGFGAAF-ALV 70 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh-------------ccHHHHHHHHHHHHHHHHH-HHH
Confidence 34567788899999999999999999888777776666555432 2223333333333333332 234
Q ss_pred cceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchh-hHHHHHHHHHHHHHHHHhccc
Q 035548 403 ICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWG-IFFFFTGWLLISLIFSATMLP 470 (518)
Q Consensus 403 ~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 470 (518)
....+..|..|++.|+++.++.+....++..+++.+.+.+.+..++. .+.+...+..+..+..+...|
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
T TIGR00880 71 AGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLP 139 (141)
T ss_pred hHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCC
Confidence 55667889999999999999999999999999999999998877764 444444445555455544444
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.2e-07 Score=94.34 Aligned_cols=145 Identities=14% Similarity=0.180 Sum_probs=117.9
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHhhHHhhhh-hccHHHHHHHHHHHHHHHHHHHhhcc--------HHHHHHHHHHhhh
Q 035548 74 CKYDNQYLQLFTSSLYLAAIVACFLASIVCRK-FGRKPTIQAASVFFLIGAILNCLAQN--------LGMLIAGRLSLGI 144 (518)
Q Consensus 74 ~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr-~Grr~~l~~~~~l~~~~~~~~~~~~~--------~~~l~~~r~l~G~ 144 (518)
+|++++....+...+....-+..+++|+++|+ +||++.+.++.++..++.++.+++.. ....+++-.+..+
T Consensus 18 lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~ 97 (654)
T TIGR00926 18 LGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIAL 97 (654)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHh
Confidence 48888998999999999999999999999996 69999999999999999988876421 2346677888999
Q ss_pred hhhcccchhhhHHHhcCCCCc---chhHHhHHHHHHHHHHHHHHHHHhhcccc-----CCCcchHHHHhhhHHHHHHHHH
Q 035548 145 GVGFGNQAVPLFISEIAPPKY---RGGLNICFQLLITVGILAANLINYGTSRI-----HPYGWRISLGGAAVPALFLLLG 216 (518)
Q Consensus 145 ~~g~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~i~~~i~~~~~~~-----~~~~wr~~f~~~~~~~~~~~~~ 216 (518)
|.|+.-|...+...|.+++++ |...+.++..+.++|.++++.+...+... ...+|...|.+.++..++.++.
T Consensus 98 G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lv 177 (654)
T TIGR00926 98 GTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIV 177 (654)
T ss_pred hccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHH
Confidence 999999999999999998653 56788888999999999998886655421 1246999999988887776555
Q ss_pred hh
Q 035548 217 SC 218 (518)
Q Consensus 217 ~~ 218 (518)
..
T Consensus 178 f~ 179 (654)
T TIGR00926 178 FM 179 (654)
T ss_pred HH
Confidence 43
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.9e-09 Score=101.48 Aligned_cols=146 Identities=12% Similarity=0.054 Sum_probs=131.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhc--cHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccch
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFG--RKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQA 152 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~G--rr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 152 (518)
+.++.+.+.+.++..+...++.++.|+++|+.. ++.+..+++++.+++.+.+.+.++++.+...-.+.|+..|.....
T Consensus 329 g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l 408 (509)
T KOG2504|consen 329 GLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSL 408 (509)
T ss_pred CCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999988 566777888888888899999999999999999999999988888
Q ss_pred hhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhccc
Q 035548 153 VPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIV 221 (518)
Q Consensus 153 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 221 (518)
....+.|..+.++-+.+.|+.....+++.++||++++.+.+.. .+|...|+.+++..++....++..+
T Consensus 409 ~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~t-g~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 409 TPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDIT-GNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeecc-CCeeeehhhcChHHHHHHHHHHHhH
Confidence 8889999999999999999999999999999999988655444 3599999999998888877777666
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=5e-09 Score=94.79 Aligned_cols=147 Identities=14% Similarity=0.005 Sum_probs=105.5
Q ss_pred CChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHH
Q 035548 314 GSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFV 393 (518)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (518)
+...+|++.+.+++...+.++..|.++||+|||.++..+.+..++...+.+.. .....++..=+.+
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S--------------~~F~afv~aR~l~ 131 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALS--------------RNFAAFVLARFLG 131 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhh
Confidence 44567889999999999999999999999999999999988888877766652 2222333323333
Q ss_pred HhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHh---ccchhhHHH---HHHHHHHH-HHHHH
Q 035548 394 AGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLC---KMRWGIFFF---FTGWLLIS-LIFSA 466 (518)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---~~~~~~~~-~~~~~ 466 (518)
+.+. +...+..++++|+++++.|+.+++.++....+|.++||.+.|++.. ..+..++.. +..+.... ..+..
T Consensus 132 Gi~k-gnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~ 210 (451)
T KOG2615|consen 132 GIFK-GNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFP 210 (451)
T ss_pred hhcc-CchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHH
Confidence 3333 3334667889999999999999999999999999999999999887 444332222 22222222 34455
Q ss_pred hcccCCCCC
Q 035548 467 TMLPETKGI 475 (518)
Q Consensus 467 ~~~~~~~~~ 475 (518)
+++|||-+.
T Consensus 211 ~~lpETL~~ 219 (451)
T KOG2615|consen 211 WFLPETLPL 219 (451)
T ss_pred HhCCccccc
Confidence 678887443
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.9e-08 Score=94.92 Aligned_cols=146 Identities=16% Similarity=0.091 Sum_probs=121.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhh
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVP 154 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (518)
+.++...|.+.+...+.-++.-.+..++.+|+|.|+.++++..+.++=.++++++++.+.+.+.+.+.|+-.+.......
T Consensus 255 ~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~f 334 (412)
T PF01306_consen 255 GQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAF 334 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhcCCCCcchhHHhHH-HHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhc-ccC
Q 035548 155 LFISEIAPPKYRGGLNICF-QLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCI-IVE 222 (518)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~-~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e 222 (518)
.|+++.+|+|-.++...+. +.+.++|..+.+.+++.+.+ +.|.+..|++.+.+.++..++..+ +++
T Consensus 335 kYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd--~~G~~~tylimg~iv~~~~li~~f~l~~ 402 (412)
T PF01306_consen 335 KYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYD--RIGFQHTYLIMGLIVLPFTLISAFTLKK 402 (412)
T ss_dssp HHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHh--hcCcHHHHHHHHHHHHHHHHHheeeecC
Confidence 9999999998877777774 67889999999988777654 358899998888887775554444 443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.6e-08 Score=95.03 Aligned_cols=139 Identities=10% Similarity=-0.026 Sum_probs=103.3
Q ss_pred hhchhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhccc
Q 035548 294 LTGINVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLT 373 (518)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (518)
...........|.+.+++|.++.+.++..+...++..++.++.|++.||+|||+.+..+..+..++.+++....
T Consensus 39 ~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~------ 112 (438)
T PRK10133 39 AVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA------ 112 (438)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH------
Confidence 33455667778888888999999999999999999999999999999999999999999998888887653221
Q ss_pred CCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHH
Q 035548 374 TNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSML 443 (518)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 443 (518)
...+.+..+....+.+.+.+... +....++.|..|++.|....++.+....+|..+++.+.+.+.
T Consensus 113 ----~a~~~~~ll~~r~l~G~g~g~~~-~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 113 ----EIMNYTLFLVGLFIIAAGLGCLE-TAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred ----hcCCHHHHHHHHHHHHHHHHHHH-hhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12233334444444444444333 233455667777777666788999999999999998876654
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.7e-08 Score=112.40 Aligned_cols=137 Identities=16% Similarity=0.071 Sum_probs=117.5
Q ss_pred CCChh-HHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchh
Q 035548 75 KYDNQ-YLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAV 153 (518)
Q Consensus 75 ~~s~~-~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 153 (518)
|.+.. +.+++.+...++..++++++|+++||+++|+++.++.++.+++.++..+.++.+.++++.++.|++.+...+..
T Consensus 264 g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 343 (1146)
T PRK08633 264 GLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPL 343 (1146)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 77888 89999999999999999999999999999999999998888888888888899999999999999999999999
Q ss_pred hhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHH
Q 035548 154 PLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALF 212 (518)
Q Consensus 154 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~ 212 (518)
.+++.+..|+++|++++++.+....+|.++++.++..+.. ...++...|++.+.+.++
T Consensus 344 ~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~ 401 (1146)
T PRK08633 344 NALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG-LGLSPAGLFYLIALVTLI 401 (1146)
T ss_pred HHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888877655433 224566666665554433
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.4e-08 Score=108.77 Aligned_cols=146 Identities=10% Similarity=-0.035 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHh
Q 035548 316 NASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAG 395 (518)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (518)
...++..+...+..++.++++|+++||++||+++........+......+... ..+.+..++..++.+.+
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~----------~~s~~~l~~~~~l~gi~ 121 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFH----------LNSVPLLFAALFLMGIH 121 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH----------HhhHHHHHHHHHHHHHH
Confidence 34677777888889999999999999999999764432222222221111110 12333334333333333
Q ss_pred hhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHHHHHHHhcccCC
Q 035548 396 FAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLISLIFSATMLPET 472 (518)
Q Consensus 396 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (518)
.....|...+++.+.+|++.++.++|+.++...++..++|.+.|.+.+..++..+++..++..+.++++.++++++
T Consensus 122 -~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (1140)
T PRK06814 122 -SALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKT 197 (1140)
T ss_pred -HHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 3344567778899999999999999999999999999999999999998887666555555555555555555544
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.9e-08 Score=93.23 Aligned_cols=144 Identities=22% Similarity=0.268 Sum_probs=116.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhh-ccHHHHHH----HHHHhhhhhhccc
Q 035548 76 YDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLA-QNLGMLIA----GRLSLGIGVGFGN 150 (518)
Q Consensus 76 ~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~-~~~~~l~~----~r~l~G~~~g~~~ 150 (518)
.+....+.+.++..++-.+.-...+++..|+|.|+++.++.+.+++=..+.+.. ++.+...+ ...+.|+..+..+
T Consensus 240 ~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~ 319 (400)
T PF03825_consen 240 YSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFH 319 (400)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHH
Confidence 566777888888888889999999999999999999999999999888888887 55444333 3557999999999
Q ss_pred chhhhHHHhcCCCCcchhHHhHHHH-HHHHHHHHHHHHHhhccccCC----CcchHHHHhhhHHHHHHHHHhhc
Q 035548 151 QAVPLFISEIAPPKYRGGLNICFQL-LITVGILAANLINYGTSRIHP----YGWRISLGGAAVPALFLLLGSCI 219 (518)
Q Consensus 151 ~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~i~~~i~~~~~~~~~----~~wr~~f~~~~~~~~~~~~~~~~ 219 (518)
.+...++.+..|++.|+++.++++. ..++|..+|..+++.+.+... +.|...+.+.+++.++..+++++
T Consensus 320 ~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~ 393 (400)
T PF03825_consen 320 AASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVI 393 (400)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999876 478999999999888765432 34666777777766665544443
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.92 E-value=1e-07 Score=92.84 Aligned_cols=192 Identities=13% Similarity=0.045 Sum_probs=115.8
Q ss_pred hHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhh----ccCChHHHHHh-HH
Q 035548 280 PQLICGTFIHMLQQLTGINVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVD----KAGRKILLVQA-AI 354 (518)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~~~~~~~~~~-~~ 354 (518)
++++......+..++ .+.....+.+.+++++|.+....+.......+.+++..++.|+++| |+|||+.++.. ..
T Consensus 4 ~~li~~~~~~~Giq~-~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~ 82 (477)
T TIGR01301 4 RKLLRVASVAAGVQF-GWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAA 82 (477)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHH
Confidence 344444444444444 3566677777788999999999999999999999999999999999 59999998765 34
Q ss_pred HHHHHHHHHHHHHHHhc-ccCCCCCCchh---HHHHHHHHHHHHhhhccccccceeeecccCChhhh--hhHHHHHHHHH
Q 035548 355 QMIICQCAIGVILKMFL-LTTNTMPTVPA---KVVVILVCVFVAGFAWSWGPICWLISSEIYPLETR--NAGYFFAVSTN 428 (518)
Q Consensus 355 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r--~~~~g~~~~~~ 428 (518)
...++..++........ ........... +..+....+..........| ..+++.|..|+++| +.+.++.+...
T Consensus 83 ~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p-~rALiaDl~p~~~~~~~~a~~~~~~~~ 161 (477)
T TIGR01301 83 LVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGP-CRAFLADLTGGDARRTRIANAYFSFFM 161 (477)
T ss_pred HHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHH-HHHhcccccCchhHHHHHHHHHHHHHH
Confidence 44444444433211000 00000000011 11222222222333333333 35778999998865 57889888999
Q ss_pred HHHHHHHHHHhHHH--Hhcc-------------c-hhhHHHHHHHHHHHHHHHHhcccCCC
Q 035548 429 MVFTFVIAQAFLSM--LCKM-------------R-WGIFFFFTGWLLISLIFSATMLPETK 473 (518)
Q Consensus 429 ~~~~~~~~~~~~~~--~~~~-------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (518)
.+|+.+++.+.+.. .+.. + ...|.+-+.+.++..++..+..+|..
T Consensus 162 ~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 162 AIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred HHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 99999988888764 2211 1 12344444445555555566666654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.7e-08 Score=97.16 Aligned_cols=145 Identities=17% Similarity=0.130 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhc
Q 035548 319 LLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAW 398 (518)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (518)
+....+..+++++|++..+++.||+|||..+.++.+...++.++..+... .......++.=++.+...+.
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~----------~~~~e~li~GR~i~Gl~~gl 132 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKS----------APSFEMLILGRLIVGLACGL 132 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHHHHHhHH
Confidence 45567788999999999999999999999998888888877777766542 23333444444444434433
Q ss_pred cccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhH-HHHhccc-hhhHHHHHHHHHHHHHHHHhcccCCCC
Q 035548 399 SWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFL-SMLCKMR-WGIFFFFTGWLLISLIFSATMLPETKG 474 (518)
Q Consensus 399 ~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (518)
... ....+..|+.|++.||....+......+|..++..+.. .+..... |.....+..+..+...+...+.||+.+
T Consensus 133 ~~~-~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk 209 (485)
T KOG0569|consen 133 STG-LVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPK 209 (485)
T ss_pred HHH-HHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 332 33467899999999999988888888888888755543 3332222 445555555555666667777888754
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.1e-08 Score=90.36 Aligned_cols=129 Identities=13% Similarity=0.057 Sum_probs=103.0
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchh
Q 035548 74 CKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAV 153 (518)
Q Consensus 74 ~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 153 (518)
+|+++.+.++..+.+..+..++.++.+++.||+|+|+++.++..+..++.++....++... ...-++.|++.+..+|..
T Consensus 173 ~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~~ 251 (310)
T TIGR01272 173 LGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMFPTI 251 (310)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999999999999888888887766666555433 345668999999999999
Q ss_pred hhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhh
Q 035548 154 PLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAA 207 (518)
Q Consensus 154 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~ 207 (518)
.+...+..|++ .+++.++. ....+|..+.|.+.+.+.+. .|.+..|++..
T Consensus 252 ~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~--~g~~~a~~v~~ 301 (310)
T TIGR01272 252 FSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADC--LGIQLAFALPV 301 (310)
T ss_pred HHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHh--ccchHHHHHHH
Confidence 99999988765 45666665 55668999999876665443 46777776433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.7e-08 Score=95.40 Aligned_cols=118 Identities=15% Similarity=0.080 Sum_probs=95.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhh-ccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchh
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKF-GRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAV 153 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~-Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 153 (518)
|.+..+.+.+.+...++..+++++.|++.||+ +||+.+..+.++.+++.+++.+.++..... .-++.|++.+...+..
T Consensus 228 g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~~~~ 306 (355)
T TIGR00896 228 GASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQGGAFPLA 306 (355)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhhhhHhHHH
Confidence 78899999999999999999999999999999 567777788888888777776665443332 4578899999998888
Q ss_pred hhHHHhcCC-CCcchhHHhHHHHHHHHHHHHHHHHHhhccc
Q 035548 154 PLFISEIAP-PKYRGGLNICFQLLITVGILAANLINYGTSR 193 (518)
Q Consensus 154 ~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~ 193 (518)
.+.+.+..+ +++++...++.+....+|..++|.+.+.+.+
T Consensus 307 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~ 347 (355)
T TIGR00896 307 LTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHD 347 (355)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887776555 4556888999888888899999988776654
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.1e-08 Score=94.17 Aligned_cols=161 Identities=15% Similarity=0.155 Sum_probs=103.3
Q ss_pred HHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhcc-----CChHHH-HHhHHHHHHHHHHHHHHHHHhcc
Q 035548 299 VVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKA-----GRKILL-VQAAIQMIICQCAIGVILKMFLL 372 (518)
Q Consensus 299 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 372 (518)
....-.|.+.++.|++..+.++.... .+...+ .++.|+++||+ ||||.+ ..+.+..++....+.+..
T Consensus 6 ~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~----- 78 (356)
T TIGR00901 6 LVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV----- 78 (356)
T ss_pred hHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC-----
Confidence 44556788889999999999888654 444443 88999999997 788875 445555555544443321
Q ss_pred cCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccc-----
Q 035548 373 TTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMR----- 447 (518)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----- 447 (518)
+....+.......+.. .......+...+++.|.+|+++|+.+.++......+|..+++.+.+.+.+..+
T Consensus 79 -----~~~~l~~l~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~ 152 (356)
T TIGR00901 79 -----PSTDLPLLAGLAFLIA-FFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGL 152 (356)
T ss_pred -----cchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 1122222222222222 22222334555778999999999999999999999999999999998887776
Q ss_pred ---hhhHHHHHHHHHHHHHHHHh-cccCC
Q 035548 448 ---WGIFFFFTGWLLISLIFSAT-MLPET 472 (518)
Q Consensus 448 ---~~~~~~~~~~~~~~~~~~~~-~~~~~ 472 (518)
|...+...++..+...+..+ ..||+
T Consensus 153 ~~~wr~~f~i~ai~~l~~~~~~~~~~~e~ 181 (356)
T TIGR00901 153 ITLWGYIFFWTALLILPGLLVTLFLAKEP 181 (356)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 65555555444444443333 34543
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.8e-07 Score=86.51 Aligned_cols=135 Identities=12% Similarity=0.066 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhhhHHHhcC
Q 035548 82 QLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIA 161 (518)
Q Consensus 82 ~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 161 (518)
+.+.-+-.+...+.-+.+-+..+|+..+.=+....+++.++.++.+++++.+.=+++-.+.+++.|........+.. .+
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y 140 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FY 140 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hc
Confidence 44555555666777777788889987655556667788889999999999999999999999999998888888754 55
Q ss_pred CCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccC
Q 035548 162 PPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVE 222 (518)
Q Consensus 162 ~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 222 (518)
++ ...+-++.+.+.+.++|+..-..+.. ...+-|..+++..++.++..+..+++.+
T Consensus 141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~ 196 (402)
T PF02487_consen 141 GK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLP 196 (402)
T ss_pred Cc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 54 34677888888888888876444443 3345577777777666555544444433
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.3e-08 Score=90.93 Aligned_cols=134 Identities=26% Similarity=0.351 Sum_probs=111.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhcc--HHHHHHHHHHhhhhhhcccchhhhH
Q 035548 79 QYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQN--LGMLIAGRLSLGIGVGFGNQAVPLF 156 (518)
Q Consensus 79 ~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~--~~~l~~~r~l~G~~~g~~~~~~~~~ 156 (518)
.+.++..+.+.++..+++++.|.++||+|||+.+..+.....++.+++.+..+ .+.+++.|+++|++.+...+...++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 118 (338)
T COG0477 39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASAL 118 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 57899999999999999999999999999999888888776666777777776 8999999999999999999999999
Q ss_pred HHhcCCC-CcchhHHhHHHH-HHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHH
Q 035548 157 ISEIAPP-KYRGGLNICFQL-LITVGILAANLINYGTSRIHPYGWRISLGGAAVPALF 212 (518)
Q Consensus 157 i~~~~~~-~~r~~~~~~~~~-~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~ 212 (518)
+.|++|+ ++|+...+.... ...+|..+++.+++.+......+||..|.+.......
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (338)
T COG0477 119 LSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLL 176 (338)
T ss_pred HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 9999998 678888888888 5888888888776554433335799977666655544
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.8e-06 Score=78.82 Aligned_cols=341 Identities=13% Similarity=-0.000 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHh------h--c----cHH---HHHHHHHHhhhhhh-c
Q 035548 85 TSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCL------A--Q----NLG---MLIAGRLSLGIGVG-F 148 (518)
Q Consensus 85 ~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~------~--~----~~~---~l~~~r~l~G~~~g-~ 148 (518)
.-.-.+...+.++..|.+.||..|.+++..+.+..-++..+.+. . + +-+ .+++.-.+.|.-.- .
T Consensus 44 gl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~La 123 (432)
T PF06963_consen 44 GLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLA 123 (432)
T ss_pred HHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHH
Confidence 33344567788889999999999999988877665443333221 1 1 111 12222222222111 1
Q ss_pred ccchhhhHHHhcC------CCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcc--
Q 035548 149 GNQAVPLFISEIA------PPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCII-- 220 (518)
Q Consensus 149 ~~~~~~~~i~~~~------~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-- 220 (518)
......+.=.||. +++.+.+.++...-.--+.-+++|++.+.+... .+.+....+.+...++..+.=+++
T Consensus 124 s~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~--~s~~~~~~~i~~~N~~S~~vEy~~l~ 201 (432)
T PF06963_consen 124 SIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTF--ASPVIAAIFIAGWNLASVFVEYFLLA 201 (432)
T ss_pred HhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112222223443 233456677777777777889999987666432 366766666666666544332221
Q ss_pred ---cCChhhHHhcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhch
Q 035548 221 ---VETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGI 297 (518)
Q Consensus 221 ---~e~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (518)
...| .+..+++.++.....+.. ...+.+.+....+...+.-+.....|+..++.+. +...+...+..++..
T Consensus 202 ~VY~~~P-~L~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~v----flas~alalLY~TVL 275 (432)
T PF06963_consen 202 RVYNSVP-ALAVKKRSSESESSSDEE-SSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPV----FLASFALALLYFTVL 275 (432)
T ss_pred HHHHhCh-HhcCCCCCcccccccccc-ccccccchhhHHHHHHHHHHHHhccHHHHHhCHH----HHHHHHHHHHHHHHh
Confidence 1222 122222221111100000 0000000000000001111111234444444333 222222222222211
Q ss_pred hHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCC
Q 035548 298 NVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTM 377 (518)
Q Consensus 298 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (518)
. +......|+...|+++...+..-....+.++.++++..++.+|+|..+.-.++......+..+.....+.... ..
T Consensus 276 s-f~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~---~~ 351 (432)
T PF06963_consen 276 S-FGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGS---PF 351 (432)
T ss_pred c-CcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCC---Cc
Confidence 1 2333445566779999999999999999999999999999999998888777776665555544443321100 00
Q ss_pred CCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 035548 378 PTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQA 438 (518)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~ 438 (518)
+.......+..+.+.-.|....= -...-+..|..|+++||+..|+-+...++...+.-.+
T Consensus 352 ~~~s~~~l~~gi~~SR~GLW~fD-L~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 352 SSISAYLLLGGIALSRIGLWSFD-LAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhh-HHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 01111222222222222222211 1223457899999999999999988888777664333
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.2e-07 Score=92.07 Aligned_cols=117 Identities=13% Similarity=0.085 Sum_probs=95.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhc--cHHHHHHHHHHhhhhhhcccch
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQ--NLGMLIAGRLSLGIGVGFGNQA 152 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~ 152 (518)
|.+....++......++..++.++++++.||+|+|+++.++.++..++.++..+.+ +++.+.+..++.|+|.+...+.
T Consensus 260 g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~ 339 (448)
T PRK09848 260 NDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTV 339 (448)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555677888999999999999999999999999888887776654 6777777888999999999999
Q ss_pred hhhHHHhcCCCC-------cchhHHhHHHHHHHHHHHHHHHHHhhc
Q 035548 153 VPLFISEIAPPK-------YRGGLNICFQLLITVGILAANLINYGT 191 (518)
Q Consensus 153 ~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~i~~~i~~~~ 191 (518)
..++.+|..+.+ ++|...+..+....+|..+++.+.+.+
T Consensus 340 ~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~ 385 (448)
T PRK09848 340 MWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFI 385 (448)
T ss_pred HHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988754 348889999999999999998876554
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.3e-08 Score=92.85 Aligned_cols=149 Identities=12% Similarity=0.031 Sum_probs=115.6
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHH
Q 035548 312 GYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCV 391 (518)
Q Consensus 312 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (518)
+-+..+.|+++....+.+++.+++.|.+.||+|+|..+++++.++..+.+++++. ...+..+++=.+
T Consensus 102 ~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg-------------~sy~~l~vAR~L 168 (464)
T KOG3764|consen 102 DRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG-------------NSYPMLFVARSL 168 (464)
T ss_pred cccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc-------------chhHHHHHHHHH
Confidence 4566788999999999999999999999999999999999999999999998873 233344444334
Q ss_pred HHHhhhccccccceeeecccCChhh-hhhHHHHHHHHHHHHHHHHHHHhHHHHhccch-hhHHHHHHHHHHHHHHHHhcc
Q 035548 392 FVAGFAWSWGPICWLISSEIYPLET-RNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRW-GIFFFFTGWLLISLIFSATML 469 (518)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~p~~~-r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 469 (518)
-+.+.+... ....+++++.+|.+. |++++|+.-.+..+|-.++|++.|.+++..|+ .+|.+.+.++++-..+.++.+
T Consensus 169 QgvgsA~~~-tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi 247 (464)
T KOG3764|consen 169 QGVGSAFAD-TSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVI 247 (464)
T ss_pred hhhhHHHHH-hhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHhee
Confidence 344433332 234467889999865 79999999999999999999999999999995 466666767776666666655
Q ss_pred cCCCC
Q 035548 470 PETKG 474 (518)
Q Consensus 470 ~~~~~ 474 (518)
+.++.
T Consensus 248 ~p~~~ 252 (464)
T KOG3764|consen 248 EPTEM 252 (464)
T ss_pred Ccccc
Confidence 54443
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.1e-07 Score=82.53 Aligned_cols=145 Identities=11% Similarity=-0.026 Sum_probs=109.6
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHH-HHHHhhccHHHHHHHHHHhhhhhhcccch
Q 035548 74 CKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGA-ILNCLAQNLGMLIAGRLSLGIGVGFGNQA 152 (518)
Q Consensus 74 ~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~-~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 152 (518)
||+|+...+.+.+....-.++.+++.|.++||+|++-..+.+..+..+.. ....| +++.=.++..+.|+........
T Consensus 295 fGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsysllAcs 372 (459)
T KOG4686|consen 295 FGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYSLLACS 372 (459)
T ss_pred hCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHHHHHHH
Confidence 39999999999999999999999999999999999988877665554433 33322 3333455677888877766666
Q ss_pred hhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCC-CcchHHH-HhhhHHHHHHHHHhhcc
Q 035548 153 VPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHP-YGWRISL-GGAAVPALFLLLGSCII 220 (518)
Q Consensus 153 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~-~~wr~~f-~~~~~~~~~~~~~~~~~ 220 (518)
....++...|+++.|++.+..+...++|..+.|++++.+...++ +.|--.| .+.+.+++....+.+.+
T Consensus 373 lWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 373 LWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred HhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 67778888999999999999999999999999999988877654 4555444 44444555544444443
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.1e-05 Score=72.83 Aligned_cols=116 Identities=9% Similarity=-0.036 Sum_probs=88.8
Q ss_pred ChhHHHHHHHHHHHHHHHH-HHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhh----c---------------------
Q 035548 77 DNQYLQLFTSSLYLAAIVA-CFLASIVCRKFGRKPTIQAASVFFLIGAILNCLA----Q--------------------- 130 (518)
Q Consensus 77 s~~~~~~~~s~~~l~~~i~-~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~----~--------------------- 130 (518)
+.+.+.++-+...+...+. .++.+++++|++|++++......+....+++++. +
T Consensus 41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~ 120 (472)
T TIGR00769 41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM 120 (472)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence 4467889998888877766 8999999999999999888777777666666554 1
Q ss_pred ------cHHHHHHHHHHhhhhhhcccc-hhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhcc
Q 035548 131 ------NLGMLIAGRLSLGIGVGFGNQ-AVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTS 192 (518)
Q Consensus 131 ------~~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~ 192 (518)
+.|...+.-+...+-...... ....+..|.++.+|-.|..++++.+.++|.++++.+...+.
T Consensus 121 ~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 121 GFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123333444455555555554 77788999999999999999999999999999998866654
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.4e-07 Score=82.85 Aligned_cols=342 Identities=9% Similarity=-0.002 Sum_probs=199.8
Q ss_pred CCChhHHH-HHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchh
Q 035548 75 KYDNQYLQ-LFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAV 153 (518)
Q Consensus 75 ~~s~~~~~-~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 153 (518)
+++..++. -+.-...-.+.+.-.+.=.+.|..-.|+++++-.+.......+.-+.++.+.+-+.-++.|...+ ...+-
T Consensus 37 NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aEIAY 115 (433)
T KOG3810|consen 37 NLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AEIAY 115 (433)
T ss_pred CccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HHHhh
Confidence 55555443 12222333455555666678999999999999888888888888899999999999999999776 56788
Q ss_pred hhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccCChhhHHhcCCh
Q 035548 154 PLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQ 233 (518)
Q Consensus 154 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~ 233 (518)
++++-+..+|+++.++.+...++.-.|-..|..++-.+...+..+.+..-.+...-..+.....+++|..+|.+.-+.+.
T Consensus 116 ysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~ 195 (433)
T KOG3810|consen 116 YSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLE 195 (433)
T ss_pred hheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhccc
Confidence 99999999999999999999999999999999988777766655666666666666666777778888776554433333
Q ss_pred hHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCC
Q 035548 234 EQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQTMGY 313 (518)
Q Consensus 234 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 313 (518)
++. ...+....+. +.+..+..+ .....+.+-++...+++.+....+.+....+++.....|...+-++..-
T Consensus 196 ~~~--~v~~~e~~~~-~~~~~~~l~------~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~ 266 (433)
T KOG3810|consen 196 DKI--SVGDLEEMNP-QASYMSYLR------GAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVAP 266 (433)
T ss_pred ccc--eeccchhcCc-cchhhHHHH------HHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhCC
Confidence 211 1111111110 000000000 0000011111111111223333344444556667777777766666531
Q ss_pred --CChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHH
Q 035548 314 --GSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCV 391 (518)
Q Consensus 314 --~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (518)
.....|..-....+.++++.+..|++--...|..-+.++..-...+.+++... ...+.|.......+
T Consensus 267 ~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~-----------~t~~Iw~~Ya~yvl 335 (433)
T KOG3810|consen 267 NPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMA-----------QTQHIWVCYAGYVL 335 (433)
T ss_pred CchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhh-----------cccceehhhhhHHH
Confidence 11223455566777788888889988555555433333222222222222111 23445666666666
Q ss_pred HHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 035548 392 FVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQA 438 (518)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~ 438 (518)
+...+..... +...-+++....+.-|..+|+..++.-+...+-..+
T Consensus 336 fr~~y~l~it-iA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~i 381 (433)
T KOG3810|consen 336 FRVIYQLTIT-IATFQIARNLSSELFGLVFGINTFVALILQSILTLI 381 (433)
T ss_pred HHhhHhhhhh-HHHHHHHHhhhhhhheeeeehHHHHHHHHHHhheEE
Confidence 6555554432 332334455556666777777666555544443333
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.5e-07 Score=89.20 Aligned_cols=150 Identities=13% Similarity=0.053 Sum_probs=117.1
Q ss_pred HcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHH
Q 035548 310 TMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILV 389 (518)
Q Consensus 310 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (518)
+++++..+-+++......+.+++.+.++++.||+|.|+++..+.++.+++.++..+... ...+..+++=
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~-----------~~~~~~~~~R 135 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAAS-----------IGFYLLLVLR 135 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH-----------hcchhhHHHH
Confidence 35778888999999999999999999999999999999999999999999988887642 2223333333
Q ss_pred HHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhc-cchh-hHHHHHHHHHHHHHHHHh
Q 035548 390 CVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCK-MRWG-IFFFFTGWLLISLIFSAT 467 (518)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~ 467 (518)
.+.+.+.+. ..|....+..+-.|+++|++..++......+|.+++-++.|.+.+. .||. .+++.+.+.++..++.++
T Consensus 136 ~lqGl~~g~-~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~ 214 (466)
T KOG2532|consen 136 FLQGLGQGV-LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFL 214 (466)
T ss_pred HHhHHHHhH-HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHH
Confidence 333333333 3456678889999999999999999999999999999999999998 7754 666666666665555555
Q ss_pred cccC
Q 035548 468 MLPE 471 (518)
Q Consensus 468 ~~~~ 471 (518)
+..+
T Consensus 215 ~~~d 218 (466)
T KOG2532|consen 215 FYSD 218 (466)
T ss_pred HhcC
Confidence 5443
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.7e-08 Score=92.41 Aligned_cols=115 Identities=14% Similarity=0.211 Sum_probs=91.2
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhh----hccHHHHH-HHHHHHHHHHHHHHhhccH-----------------
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRK----FGRKPTIQ-AASVFFLIGAILNCLAQNL----------------- 132 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr----~Grr~~l~-~~~~l~~~~~~~~~~~~~~----------------- 132 (518)
|++..+.+.+--+.-+...+.+|+.|..+|| |||||.++ .+..+..++.++..++.++
T Consensus 63 Gvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai 142 (498)
T KOG0637|consen 63 GVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAI 142 (498)
T ss_pred CCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHH
Confidence 7888888888888888899999999999995 78866555 5566667777777776544
Q ss_pred HHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchh-HHhHHHHHHHHHHHHHHHHHh
Q 035548 133 GMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGG-LNICFQLLITVGILAANLINY 189 (518)
Q Consensus 133 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~G~~i~~~i~~ 189 (518)
..++++--+.=++.-.....+.+++.|...++++.+ +++++.....+|..+|..++.
T Consensus 143 ~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 143 VLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred HHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence 244555555666777888899999999998877766 999999999999999988764
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.1e-07 Score=92.93 Aligned_cols=148 Identities=14% Similarity=0.084 Sum_probs=105.5
Q ss_pred HHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHH
Q 035548 309 QTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVIL 388 (518)
Q Consensus 309 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (518)
+....+.....+..+++.++..+|.++.|.++|++|||+++..+.++..++.++.++. .+.+ ...+
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a-------------~~~~-~~~~ 176 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA-------------PNYW-MFLI 176 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh-------------CcHH-HHHH
Confidence 3345566777888899999999999999999999999999999999998888766653 2233 3333
Q ss_pred HHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHHHHHHHhc
Q 035548 389 VCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLISLIFSATM 468 (518)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (518)
.=++.+.+..+...+.+.+..|..+++.|+.+..+ ......++.+++...+++.. +|........+..+..++.+++
T Consensus 177 ~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~l 253 (521)
T KOG0255|consen 177 FRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWFL 253 (521)
T ss_pred HHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHc
Confidence 33333333344445667888999999999999999 88888899999999998887 4443333333333333333555
Q ss_pred ccCCC
Q 035548 469 LPETK 473 (518)
Q Consensus 469 ~~~~~ 473 (518)
.+|.+
T Consensus 254 ~~Es~ 258 (521)
T KOG0255|consen 254 PPESP 258 (521)
T ss_pred cCcCh
Confidence 55653
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.3e-07 Score=93.68 Aligned_cols=151 Identities=5% Similarity=0.052 Sum_probs=119.5
Q ss_pred cccCCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHh----------hccHHHHHHHHHH
Q 035548 72 NYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCL----------AQNLGMLIAGRLS 141 (518)
Q Consensus 72 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~----------~~~~~~l~~~r~l 141 (518)
+++|.++.+.|.+.....++..++....+++.+|++.|+++.++.++.+++.+.... .++.+.+...-++
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l 360 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII 360 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence 346999999999999999999999999999999999999999999999888755431 1444456666889
Q ss_pred hhhhhhcccchhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCC-----CcchHHH-HhhhHHHHHHHH
Q 035548 142 LGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHP-----YGWRISL-GGAAVPALFLLL 215 (518)
Q Consensus 142 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~-----~~wr~~f-~~~~~~~~~~~~ 215 (518)
.+++.+........++.+..|++++++..++.....++|..+++.+++.+....+ ++.++.. .+..+..++.+.
T Consensus 361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~ 440 (468)
T TIGR00788 361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLP 440 (468)
T ss_pred HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988776654322 3334443 333344444444
Q ss_pred HhhcccC
Q 035548 216 GSCIIVE 222 (518)
Q Consensus 216 ~~~~~~e 222 (518)
..+++|+
T Consensus 441 ~~~llP~ 447 (468)
T TIGR00788 441 LLHLLPR 447 (468)
T ss_pred HHHhCCC
Confidence 5556774
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.8e-07 Score=89.75 Aligned_cols=114 Identities=17% Similarity=0.159 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhc--cHHHHHHHHHHhhhhhhcccchhhhH
Q 035548 79 QYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQ--NLGMLIAGRLSLGIGVGFGNQAVPLF 156 (518)
Q Consensus 79 ~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~~~ 156 (518)
...+.+..+..++..++.+++++++||+|+|+++..+.++.+++.++..+.+ |.+.+++.-++.|++.+...+...++
T Consensus 260 ~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~ 339 (428)
T PF13347_consen 260 GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAM 339 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccc
Confidence 5668888899999999999999999999999999999999999999988886 99999999999999999999999999
Q ss_pred HHhcCCC-------CcchhHHhHHHHHHHHHHHHHHHHHhhcc
Q 035548 157 ISEIAPP-------KYRGGLNICFQLLITVGILAANLINYGTS 192 (518)
Q Consensus 157 i~~~~~~-------~~r~~~~~~~~~~~~~G~~i~~~i~~~~~ 192 (518)
++|..+. ++.|...+..+...-+|..+++.+.+.+.
T Consensus 340 ~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l 382 (428)
T PF13347_consen 340 LADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLL 382 (428)
T ss_pred cccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 9998873 33488889998888888888888765543
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.1e-07 Score=78.79 Aligned_cols=165 Identities=12% Similarity=0.172 Sum_probs=111.7
Q ss_pred chhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCC
Q 035548 296 GINVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTN 375 (518)
Q Consensus 296 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (518)
..+.+..|.|.+-+++|++..+...+.....++..+ .++.|.+.|+.|.+..+.++.....++..++.....-
T Consensus 17 t~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~------ 89 (250)
T PF06813_consen 17 TTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSG------ 89 (250)
T ss_pred cccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhC------
Confidence 456778899999999999999999888888888876 4889999999999999999999999988877665421
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccc-ccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHH
Q 035548 376 TMPTVPAKVVVILVCVFVAGFAWSWG-PICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFF 454 (518)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (518)
..+..+.|.. ....+..+.+..+. ........+.+| +.||++.|+.-....+++.+-..+...+.+........+.
T Consensus 90 ~i~~~~~~~~--~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~l 166 (250)
T PF06813_consen 90 RIPSLPVWLM--CLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFL 166 (250)
T ss_pred ccCccchHHH--HHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHH
Confidence 0111222222 33333333333322 222233457888 4789999999999999999988888777665433344444
Q ss_pred HHHHHHHHHHHHhccc
Q 035548 455 TGWLLISLIFSATMLP 470 (518)
Q Consensus 455 ~~~~~~~~~~~~~~~~ 470 (518)
+....+.+++...+++
T Consensus 167 a~~~~~v~l~~~~~vr 182 (250)
T PF06813_consen 167 AVLPAVVCLVAMFFVR 182 (250)
T ss_pred HHHHHHHHHHHhhhee
Confidence 4444444444444443
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.5e-06 Score=77.42 Aligned_cols=143 Identities=17% Similarity=0.091 Sum_probs=113.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhh-ccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchh
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKF-GRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAV 153 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~-Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 153 (518)
|+|..+.|++.+...+.....++..-.+++|. .+|+..+....++.++.+.+.+.+.-..+.. -++.|+|.|..++.+
T Consensus 239 G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~la 317 (395)
T COG2807 239 GLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLA 317 (395)
T ss_pred CCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHH
Confidence 89999999999999999999999999999965 5777778888888888888777765544444 499999999999999
Q ss_pred hhHHHhcCCCCcc-hhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhc
Q 035548 154 PLFISEIAPPKYR-GGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCI 219 (518)
Q Consensus 154 ~~~i~~~~~~~~r-~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 219 (518)
...+.+..+..++ ++..++.+....+=...||.+.+.+.+.. -+|+......+...+...+.-+.
T Consensus 318 L~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~-gsw~~~~~~l~~~~i~m~i~Gl~ 383 (395)
T COG2807 318 LTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDAT-GSWSAPLVLLALATLLMLIFGLR 383 (395)
T ss_pred HHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhc-CChHHHHHHHHHHHHHHHHHHhh
Confidence 9999998876544 56667777777777778888877766554 48999888777776665544443
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.8e-07 Score=88.68 Aligned_cols=131 Identities=13% Similarity=0.112 Sum_probs=90.2
Q ss_pred HhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCch
Q 035548 302 FYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVP 381 (518)
Q Consensus 302 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (518)
.-++++..+.|-++ ...++.....++..++.++.|+++|.+|||..++.+.++..++.++.+.. .+
T Consensus 65 ~~l~~I~~diG~~~-~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA-------------~~ 130 (599)
T PF06609_consen 65 SILPYINADIGGSD-NWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA-------------QN 130 (599)
T ss_pred HHHHHHHHhcCCCc-cchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC-------------Cc
Confidence 33466667777654 44667777889999999999999999999999999999999988887652 33
Q ss_pred hHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccch
Q 035548 382 AKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRW 448 (518)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (518)
....+....+.+.+.+.. ......++|..|.+.|..+.++..........+++.+...+..+.+|
T Consensus 131 ~~~~iag~~l~GvgaG~~--~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~W 195 (599)
T PF06609_consen 131 MNTFIAGMVLYGVGAGVQ--ELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGW 195 (599)
T ss_pred HHHHHHHHHHHHHhhHHH--HHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCc
Confidence 344455555555443332 23344579999999998877766554444444556666555444444
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=7.3e-06 Score=74.55 Aligned_cols=356 Identities=14% Similarity=0.032 Sum_probs=181.0
Q ss_pred HHHHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHHHHH--HHHHhhHHhhh-
Q 035548 28 IIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAI--VACFLASIVCR- 104 (518)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~--i~~~~~G~l~d- 104 (518)
..+.+....+|...+..+ ++|-+.+.= |+|.++.+.. .+.+. .--+.|.++.|
T Consensus 34 llLl~LYllQGiP~GL~~---~iP~lL~ak-----------------~vSyt~~a~f----S~ay~P~sLKllWaPiVDs 89 (510)
T KOG3574|consen 34 LLLLFLYLLQGIPLGLIG---AIPLLLQAK-----------------GVSYTSQAIF----SFAYWPFSLKLLWAPIVDS 89 (510)
T ss_pred HHHHHHHHHcCCchhHhh---hhHHHhcCC-----------------Ccchhhhhhh----hhhhhHHHHHHHHHhhhHH
Confidence 333444678888888876 234443321 5666664443 33333 33468889999
Q ss_pred ----hhccHHHHHH-HHHHHHHHHHHHHh-----------hccHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchh
Q 035548 105 ----KFGRKPTIQA-ASVFFLIGAILNCL-----------AQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGG 168 (518)
Q Consensus 105 ----r~Grr~~l~~-~~~l~~~~~~~~~~-----------~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~ 168 (518)
|+||||..++ +..+.+....+.+. .++...+...-++.-+..+..-.+.-.+.-....+++-|-
T Consensus 90 ~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgy 169 (510)
T KOG3574|consen 90 VYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGY 169 (510)
T ss_pred HHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCc
Confidence 9999886543 33333333333332 1344445555667777777788888888888889999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHhhccccCC-------Ccch---------HHHHhhhHHHHHHHHHhhcccCChhhHHhcCC
Q 035548 169 LNICFQLLITVGILAANLINYGTSRIHP-------YGWR---------ISLGGAAVPALFLLLGSCIIVETPASLIERGK 232 (518)
Q Consensus 169 ~~~~~~~~~~~G~~i~~~i~~~~~~~~~-------~~wr---------~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~ 232 (518)
+......+...|..++..+ ++..... .+|- ...++.+...++.-.++.+..+++...
T Consensus 170 aST~q~Vg~~~GyfL~~~i--fLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~----- 242 (510)
T KOG3574|consen 170 ASTCQSVGQTAGYFLGNVV--FLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDES----- 242 (510)
T ss_pred hhHHHHHHHhhhHHhhcce--eeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchh-----
Confidence 9988888888888888776 4432210 1121 122344444444444444443333110
Q ss_pred hhHHHHHHHhhhCCccHHHHHHHHHHHHHhhccccc---chhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHH
Q 035548 233 QEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKH---PYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQ 309 (518)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (518)
.+ ++.+..... -++++++.+..+.+... .+..= .++..-....+.-+.
T Consensus 243 ----------------~~---------~e~~~~i~~~yk~l~~vLklk~v~~la~i-~lt~K---~gf~a~da~t~LkLl 293 (510)
T KOG3574|consen 243 ----------------VD---------EELELGIHESYKLLRDVLKLKSVRWLAGI-LLTGK---LGFQAADALTSLKLL 293 (510)
T ss_pred ----------------hh---------hhhhcCHHHHHHHHHHHHcCccHHHHHHH-HHHHH---HHhhhhhhccchHHH
Confidence 00 000000111 22334433332222111 11111 123333444555667
Q ss_pred HcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHh---HHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHH
Q 035548 310 TMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQA---AIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVV 386 (518)
Q Consensus 310 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (518)
+.|++..+-++...+..-.+++.....|++...-.+-....-+ -++.+....++...... .... ....+....+
T Consensus 294 e~Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta~~~pl~~~lka~~~R~~~~~~~t~Lv~~~~~-~~~~--~G~~~~~~~i 370 (510)
T KOG3574|consen 294 EHGVPKEELALIAVPLVPLQIALPLYIGKWTAGPRPLNVFLKAVPYRLGGGLVQTALVWWTPT-LGHS--DGTFPRGYYI 370 (510)
T ss_pred HcCCChhHheeeeeehhhHHHhhhhhheeecCCCCcchHHHHhhhHHHHHHHHHHHHHhhhcc-cccC--CCceeechHH
Confidence 7899988876665544445555555555443321111111100 01111111111111100 0000 0011111112
Q ss_pred HHH--HHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhcc
Q 035548 387 ILV--CVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKM 446 (518)
Q Consensus 387 ~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 446 (518)
+.+ ..+..++.....-...+..+++.++...|+.+.+.|+..++|+-.-..+..++.|..
T Consensus 371 l~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~l 432 (510)
T KOG3574|consen 371 LLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGL 432 (510)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccC
Confidence 111 112222211111223456788999999999999999999999999888888888754
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.8e-07 Score=85.26 Aligned_cols=177 Identities=13% Similarity=0.157 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHhhchhHHHHhHHHHH-HHcC----CCChHHHHHHHHHHHHHHHHhhhhhhhhhcc-CChHHHHHhHH
Q 035548 281 QLICGTFIHMLQQLTGINVVMFYAPVLF-QTMG----YGSNASLLSAVISGTINVASTLVAIVLVDKA-GRKILLVQAAI 354 (518)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g----~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~ 354 (518)
..+..+..-+.--++ ++.+...+..|+ .+.+ ++.+++.-....++...-...+++||++||+ |+|+.+..+.+
T Consensus 22 ~l~~if~vE~WERFs-yYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGai 100 (498)
T COG3104 22 GLYLIFFVELWERFS-YYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAI 100 (498)
T ss_pred hHHHHHHHHHHHHHh-hhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 334444444444433 444444444343 3445 8888888777777777778899999999995 99999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChh--hhhhHHHHHHHHHHHHH
Q 035548 355 QMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLE--TRNAGYFFAVSTNMVFT 432 (518)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~r~~~~g~~~~~~~~~~ 432 (518)
++.++.++++... ........+.+.+...+.+. .-|....+..|++|++ .|-.++++..+..++|+
T Consensus 101 l~~iGh~~L~~~~-----------~~~~~gl~i~L~~I~iG~Gl-~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGs 168 (498)
T COG3104 101 LMAIGHLVLAISS-----------VSGPGGLYIGLALIIVGTGL-FKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGS 168 (498)
T ss_pred HHHHHHHHHhccc-----------cccccHHHHHHHHHHhcccc-ccccHHHHHHHhcCCCCcccCCCccEEEEEeehHH
Confidence 9999999887631 02222333333333344333 3355567788988875 46677888888889999
Q ss_pred HHHHHHhHHHHhccchhhHHHHHHHHHHHHHHHHhccc
Q 035548 433 FVIAQAFLSMLCKMRWGIFFFFTGWLLISLIFSATMLP 470 (518)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (518)
.++|.+.+++.+..++..-+..+++.....++.+.+.+
T Consensus 169 l~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~ 206 (498)
T COG3104 169 LIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGR 206 (498)
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999987766666666666666665554
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.7e-06 Score=86.21 Aligned_cols=115 Identities=13% Similarity=0.114 Sum_probs=91.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHh-----hccHHHHHHHHHHhhhhhhcccch
Q 035548 78 NQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCL-----AQNLGMLIAGRLSLGIGVGFGNQA 152 (518)
Q Consensus 78 ~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~~ 152 (518)
....+++.+...++..++.+++++++||+|+|+.+.++..+..++.+...+ .++.+.+++.-++.|++.+...+.
T Consensus 265 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~ 344 (473)
T PRK10429 265 ADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVL 344 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777889999999999999999999999888877766655432 345677777888999999999999
Q ss_pred hhhHHHhcCC-------CCcchhHHhHHHHHHHHHHHHHHHHHhhcc
Q 035548 153 VPLFISEIAP-------PKYRGGLNICFQLLITVGILAANLINYGTS 192 (518)
Q Consensus 153 ~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~ 192 (518)
..++++|..+ +++.|..++......-+|..+++.+.+.+.
T Consensus 345 ~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l 391 (473)
T PRK10429 345 QVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVL 391 (473)
T ss_pred HHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999866 233366888888888888888887766543
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.3e-06 Score=73.86 Aligned_cols=307 Identities=15% Similarity=0.120 Sum_probs=162.0
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchh
Q 035548 74 CKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAV 153 (518)
Q Consensus 74 ~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 153 (518)
++....++|.+..+.+-...+...+.|-++|+-|||+.-+.-.+.+++++ +.-.+++|-.++++|.+-|++.+..+.+.
T Consensus 67 YgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~LGGiaTsLLFSaF 145 (454)
T KOG4332|consen 67 YGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVLGGIATSLLFSAF 145 (454)
T ss_pred cCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhhhhhHHHHHHHHHH
Confidence 36778888888887777788888999999999999997655555444433 23357899999999999999999888887
Q ss_pred hhH-HHhcCCCCcchhHHhH----HH----HHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHH-HHHHhhcccCC
Q 035548 154 PLF-ISEIAPPKYRGGLNIC----FQ----LLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALF-LLLGSCIIVET 223 (518)
Q Consensus 154 ~~~-i~~~~~~~~r~~~~~~----~~----~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~-~~~~~~~~~e~ 223 (518)
.++ +.|.-.+ |+.-.-+ +. .+..+=.+++.+.+-.+......|--.+|-..+....+ ..++.--..|.
T Consensus 146 EsWliaEHnek--r~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil~~W~EN 223 (454)
T KOG4332|consen 146 ESWLIAEHNEK--RGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVILSSWSEN 223 (454)
T ss_pred HHHHHHHhhhc--cCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHhhhhhc
Confidence 776 4555433 3321111 11 11222233333333333333334555666444433222 11211111111
Q ss_pred hhhHHhcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHh
Q 035548 224 PASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFY 303 (518)
Q Consensus 224 p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (518)
-++..+.++.++.. +...+.+ ....++.+...+...+....+.+...|
T Consensus 224 ------ygdps~~kdlltqf-----------------------~gaa~ai---aSD~ki~LLG~iqsLFE~smytFVFLW 271 (454)
T KOG4332|consen 224 ------YGDPSENKDLLTQF-----------------------KGAARAI---ASDEKIALLGAIQSLFEGSMYTFVFLW 271 (454)
T ss_pred ------cCChhhhHHHHHHh-----------------------hHhHHHH---hcchHHHHHHHHHHHHhhhhheeeeee
Confidence 11111111111100 0111111 122333444445555444445555556
Q ss_pred HHHHHH-HcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCCh--HHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCc
Q 035548 304 APVLFQ-TMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRK--ILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTV 380 (518)
Q Consensus 304 ~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (518)
.|.+-. +.+.+ -|.++..+.+..++|+-+..++..|-..| ..+.+.+.+....+.+..+.. ...+ ...
T Consensus 272 TPaLspn~e~iP---hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~---~vsP---~ke 342 (454)
T KOG4332|consen 272 TPALSPNDEEIP---HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTS---SVSP---SKE 342 (454)
T ss_pred cccCCCCcccCC---chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHh---ccCC---CcC
Confidence 655421 22222 36677777788888887776665553332 344444444443333322221 1111 123
Q ss_pred hhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHH
Q 035548 381 PAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAV 425 (518)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~ 425 (518)
.....++..+++-...+..+.++ .-+-.+..|.+.|++.+-+..
T Consensus 343 s~~~s~i~F~~~E~cvGlfwPSi-mkmRsqyIPEearstimNfFR 386 (454)
T KOG4332|consen 343 SPSESLIGFCLFEACVGLFWPSI-MKMRSQYIPEEARSTIMNFFR 386 (454)
T ss_pred CchHHHHHHHHHHHHHhhcchHH-HHHHHhhCCHHHHhhhhhhee
Confidence 33444666667777766666544 345678899999887654443
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.6e-06 Score=75.96 Aligned_cols=138 Identities=12% Similarity=-0.058 Sum_probs=105.2
Q ss_pred chhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCC
Q 035548 296 GINVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTN 375 (518)
Q Consensus 296 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (518)
.........|.+.+.++.+..+++++......+..++++..+++.+|+|+|+.++.++.++++++.++.-..
T Consensus 28 ~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa-------- 99 (422)
T COG0738 28 ITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAA-------- 99 (422)
T ss_pred HhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhh--------
Confidence 334455667888888999999999999999999999999999999999999999999999999998886432
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccc-ccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhc
Q 035548 376 TMPTVPAKVVVILVCVFVAGFAWSWG-PICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCK 445 (518)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 445 (518)
........+..++..+.+.+.. ...+.++..+.+++....-+.+.+.++.+|+.++|.+.+.+..+
T Consensus 100 ----~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils 166 (422)
T COG0738 100 ----SSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILS 166 (422)
T ss_pred ----hhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 1111222222223333332222 34456778888887777889999999999999999999998873
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.8e-06 Score=81.82 Aligned_cols=113 Identities=15% Similarity=0.135 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHhhhhhhcccchhhhHH
Q 035548 80 YLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCL--AQNLGMLIAGRLSLGIGVGFGNQAVPLFI 157 (518)
Q Consensus 80 ~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~--~~~~~~l~~~r~l~G~~~g~~~~~~~~~i 157 (518)
..+.+.....++..++.+++++++||+|+|+.+..+.++.++..+...+ .++.+.+++..++.|++.+...+...+++
T Consensus 265 ~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ 344 (444)
T PRK09669 265 LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMF 344 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677888899999999999999999999888776654443323 35777788889999999999999999999
Q ss_pred HhcCCC-------CcchhHHhHHHHHHHHHHHHHHHHHhhcc
Q 035548 158 SEIAPP-------KYRGGLNICFQLLITVGILAANLINYGTS 192 (518)
Q Consensus 158 ~~~~~~-------~~r~~~~~~~~~~~~~G~~i~~~i~~~~~ 192 (518)
+|..+. ++.|...+..+.+..+|..+|+.+++.+.
T Consensus 345 ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll 386 (444)
T PRK09669 345 SDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWIL 386 (444)
T ss_pred HhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998862 22366788888888899988888876544
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.3e-06 Score=85.01 Aligned_cols=141 Identities=18% Similarity=0.087 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhh
Q 035548 318 SLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFA 397 (518)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (518)
.+++.+...++..++.++.|+++|++|||+.+..+.+...++.++.... .+....++.=++.+.+.+
T Consensus 91 ~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a-------------~~~~~l~~GR~l~G~g~G 157 (513)
T KOG0254|consen 91 QGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA-------------PSWYQLIVGRILTGLGVG 157 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-------------hhHHHHHHHHHHhccchh
Confidence 3799999999999999999999999999999999999999999888874 233444444444444444
Q ss_pred ccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhcc--chhhHHHHHHHHHHHHHHHHhcccCCC
Q 035548 398 WSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKM--RWGIFFFFTGWLLISLIFSATMLPETK 473 (518)
Q Consensus 398 ~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (518)
.... +...+.+|..|++.||...+..+....+|..++ ++.+...++. +|...+....+..+...+..++.||+.
T Consensus 158 ~~~~-~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp 233 (513)
T KOG0254|consen 158 GASV-LAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESP 233 (513)
T ss_pred hhhh-cchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 3332 445788999999999999999888888666666 6666666543 566555544444444444466677653
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.7e-06 Score=79.51 Aligned_cols=114 Identities=23% Similarity=0.155 Sum_probs=77.3
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHH
Q 035548 313 YGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVF 392 (518)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (518)
+++...+.+.....++.++|+++.|++.||+|||++....++++.++.++.++... . +.....+..+.+.=+
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~-------~-~~~~~~m~~L~~~R~ 152 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVG-------T-TSPLGVMMTLCFFRF 152 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCC-------C-CCCcchhhHHHHHHH
Confidence 56677788899999999999999999999999999999888888888875544211 0 111122222222222
Q ss_pred HHhhhc-cccccceeeecccCChhhhhhHHHHHHHHHHHHHHH
Q 035548 393 VAGFAW-SWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFV 434 (518)
Q Consensus 393 ~~~~~~-~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~ 434 (518)
..+.++ +=.|+..+.++|....+.||+-.+...+....|...
T Consensus 153 ~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gila 195 (538)
T KOG0252|consen 153 LLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILA 195 (538)
T ss_pred HhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhh
Confidence 222222 334777788899999999998877665554444333
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.38 E-value=7.8e-06 Score=66.47 Aligned_cols=110 Identities=17% Similarity=0.172 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhhhHHHhcC
Q 035548 82 QLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIA 161 (518)
Q Consensus 82 ~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 161 (518)
-.-.++.+....+++++...+.+++|.|+.+++|.+.+.+-... -+-++.+.++.+-.+.|++.+..+++.-.++.+..
T Consensus 40 ~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~-~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s 118 (156)
T PF05978_consen 40 YYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS-FFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYS 118 (156)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcC
Confidence 34456666777888888999999999999999999998754444 35678899999999999999999999999999999
Q ss_pred CCCcchhHHhHHHHHHHHHHHHHHHHHhhcc
Q 035548 162 PPKYRGGLNICFQLLITVGILAANLINYGTS 192 (518)
Q Consensus 162 ~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~ 192 (518)
++++|++..+++......+.++|.++..+..
T Consensus 119 ~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 119 TEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred CHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888889999988865543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.1e-09 Score=103.96 Aligned_cols=146 Identities=18% Similarity=0.095 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhh
Q 035548 317 ASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGF 396 (518)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (518)
..++......++.++|+++.|++.||+|||+.+..+..+..++.++..+... ..+.+.....-.+.+.+.
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~----------~~~~~~~~~~R~~~G~~~ 116 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPS----------YNNFWMLLIGRFLIGFGI 116 (451)
T ss_pred HHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccc----------cccccccccccccccccc
Confidence 4577888899999999999999999999999999998888888877766310 012333333333444443
Q ss_pred hccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhcc---chhhHHHHHHHHHHHHHHHHhcccCCC
Q 035548 397 AWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKM---RWGIFFFFTGWLLISLIFSATMLPETK 473 (518)
Q Consensus 397 ~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (518)
+.. .+....++.|..|++.|+...++.+....+|..++..+.-...+.. .|.....+..+..+...+...++||+.
T Consensus 117 g~~-~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP 195 (451)
T PF00083_consen 117 GGA-YVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESP 195 (451)
T ss_pred ccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 333 3456688899999999999988888877777776665543332222 244455555544444455556678763
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.5e-06 Score=60.45 Aligned_cols=62 Identities=16% Similarity=0.184 Sum_probs=58.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHH
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLI 136 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~ 136 (518)
++|.++.|++.+..++||.+|++...++.++..+++.+..++++..+..+.+++.++.+.+.
T Consensus 23 ~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w~ 84 (85)
T PF06779_consen 23 GLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLWS 84 (85)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHHh
Confidence 89999999999999999999999999999998899999999999999999999998887653
|
Note that many members are hypothetical proteins. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.7e-06 Score=80.71 Aligned_cols=186 Identities=11% Similarity=0.023 Sum_probs=114.2
Q ss_pred hhHHHHHHHHHHHHHhhchhHHHHhHHHHHHH--cCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCC-hHHHHHhHHH
Q 035548 279 RPQLICGTFIHMLQQLTGINVVMFYAPVLFQT--MGYGSNASLLSAVISGTINVASTLVAIVLVDKAGR-KILLVQAAIQ 355 (518)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~-~~~~~~~~~~ 355 (518)
.||.++...+..+.....+.....-.-.|+++ .+-+.+..|+..+...++..+++++.|+...|.+. |+.++.+.++
T Consensus 32 ~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii 111 (488)
T KOG2325|consen 32 NWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLI 111 (488)
T ss_pred chHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHH
Confidence 34444444444433333233222222234455 56677788999999999999999999999999886 8888899999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHH
Q 035548 356 MIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVI 435 (518)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~ 435 (518)
+.++.++...+.+. ++. ...++..+=+..|.+.+.....-.|+++..-.+.|.++++.......++..+|
T Consensus 112 ~~~g~llY~~l~~~--------~~~--~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilG 181 (488)
T KOG2325|consen 112 AIIGNLLYLALAYV--------PNG--VKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILG 181 (488)
T ss_pred HHHHHHHHHHHHhc--------ccc--hHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHh
Confidence 99999888554321 121 23333333333333433334556788887777778888777766556666666
Q ss_pred HHHhHHHHh---c-c----------chhhHHHHHHHHHHHHHHHHhcccCCCC
Q 035548 436 AQAFLSMLC---K-M----------RWGIFFFFTGWLLISLIFSATMLPETKG 474 (518)
Q Consensus 436 ~~~~~~~~~---~-~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (518)
|.+-..+.. . . ...+.|+...+.++..+++..+.+|..+
T Consensus 182 p~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 182 PTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred HHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence 555433221 1 0 1125666677777777777777766543
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.3e-06 Score=83.19 Aligned_cols=143 Identities=16% Similarity=0.081 Sum_probs=123.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhh
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVP 154 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (518)
+-.+...|........|-++.-++.+++..|+|+-+++.+++.+..+=.+..+..+|.|+.+..-+++|+..+..+.+..
T Consensus 402 ~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~ 481 (618)
T KOG3762|consen 402 GGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAII 481 (618)
T ss_pred CCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHH
Confidence 55666677777778888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhcCCCCcchhHHhHHHH-HHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhc
Q 035548 155 LFISEIAPPKYRGGLNICFQL-LITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCI 219 (518)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~-~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 219 (518)
+|++...||+-|..+.++.+. ..++|--+|.++++..... ++=|..|.+.++.+++.++....
T Consensus 482 sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~--fg~~ttf~~~giAcl~~l~~~~~ 545 (618)
T KOG3762|consen 482 SYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVER--FGARTTFRIFGIACLVTLALFIS 545 (618)
T ss_pred HHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhee--ehhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998765 4677888888887666543 57889998888887776555544
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.2e-05 Score=73.23 Aligned_cols=148 Identities=12% Similarity=0.091 Sum_probs=122.6
Q ss_pred cccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhh-hhccHHHHHHHHHHHHHHHHHHHh---hccHHHHHHHHHHhhhh
Q 035548 70 EDNYCKYDNQYLQLFTSSLYLAAIVACFLASIVCR-KFGRKPTIQAASVFFLIGAILNCL---AQNLGMLIAGRLSLGIG 145 (518)
Q Consensus 70 ~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~d-r~Grr~~l~~~~~l~~~~~~~~~~---~~~~~~l~~~r~l~G~~ 145 (518)
..+.||++..+...+.+....|..++-...|++.. |.++|+.-.+|+.+..++..+..+ ..+.+.+...-++.|++
T Consensus 235 gg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g 314 (403)
T PF03209_consen 235 GGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLG 314 (403)
T ss_pred hhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHh
Confidence 67778999999999999999999999999998888 678888888888887777655443 46889999999999999
Q ss_pred hhcccchhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhcccc--------CCCcchHHHHhhhHHHHHHHHHh
Q 035548 146 VGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRI--------HPYGWRISLGGAAVPALFLLLGS 217 (518)
Q Consensus 146 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~--------~~~~wr~~f~~~~~~~~~~~~~~ 217 (518)
.|.......+.+.+...+++.|..+|.+.....+...++..+++...+. ...++-.+|.+-++..++.+.+.
T Consensus 315 ~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 315 NGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred hhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998888888887665431 22467777777777666655444
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00015 Score=69.83 Aligned_cols=115 Identities=15% Similarity=0.240 Sum_probs=94.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhc--cHHHHHHHHHHhhhhhhcccch
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQ--NLGMLIAGRLSLGIGVGFGNQA 152 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~ 152 (518)
|.++....+.......+..++.+++.++++|+|+|+++.++.++..++.++..+.+ +.+.+++..++.++|.+...+.
T Consensus 268 g~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l 347 (467)
T COG2211 268 GDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPL 347 (467)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccc
Confidence 55666667778888888888899999999999999999999999999999888875 7888999999999999999999
Q ss_pred hhhHHHhcCCC------Ccc-hhHHhHHHHHHHHHHHHHHHHHh
Q 035548 153 VPLFISEIAPP------KYR-GGLNICFQLLITVGILAANLINY 189 (518)
Q Consensus 153 ~~~~i~~~~~~------~~r-~~~~~~~~~~~~~G~~i~~~i~~ 189 (518)
..++++|..+- ++| |...+......=+|..++..+.+
T Consensus 348 ~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g 391 (467)
T COG2211 348 PWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPG 391 (467)
T ss_pred cHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999887652 222 66777777777777777765543
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.2e-05 Score=75.16 Aligned_cols=141 Identities=11% Similarity=0.047 Sum_probs=89.6
Q ss_pred hhHHHHhHHHHH-HHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhc----cCChHHHH-HhHHHHHHHHHHHHHHHHHh
Q 035548 297 INVVMFYAPVLF-QTMGYGSNASLLSAVISGTINVASTLVAIVLVDK----AGRKILLV-QAAIQMIICQCAIGVILKMF 370 (518)
Q Consensus 297 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 370 (518)
+.....|+.+++ +..|+++..++.+..+.-+...+.-++.|+++|| +||||..+ ++.+..+++..++....
T Consensus 25 ~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p--- 101 (460)
T PRK11462 25 FDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTP--- 101 (460)
T ss_pred HHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCC---
Confidence 344555555555 5569999999999999999999999999999997 57776655 34455555443332210
Q ss_pred cccCCCCCCch-hHHHHHHHHHHHHhhhccccccceeeecccCC-hhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhcc
Q 035548 371 LLTTNTMPTVP-AKVVVILVCVFVAGFAWSWGPICWLISSEIYP-LETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKM 446 (518)
Q Consensus 371 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 446 (518)
+ .+... ..+..+..+++..++.....|- .++..|+.+ +++|++..++....+.+|..+++.+...+.+..
T Consensus 102 ----~-~s~~~~~~y~~~~~~~~~~~~t~~~ipy-~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~ 173 (460)
T PRK11462 102 ----D-LSMNGKMIYAAITYTLLTLLYTVVNIPY-CALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLI 173 (460)
T ss_pred ----C-CCcchHHHHHHHHHHHHHHHHHHHhccH-HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 01111 2223333333344444333332 356677766 688999999998888888888877766655543
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00018 Score=66.17 Aligned_cols=156 Identities=13% Similarity=0.085 Sum_probs=94.7
Q ss_pred HHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHH
Q 035548 306 VLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVV 385 (518)
Q Consensus 306 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (518)
.+.+++|++..+.+.++....+...+...+.|.+.||+|||+..+...++..++++.-. ....+..
T Consensus 59 ~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~--------------~~~~~~L 124 (354)
T PF05631_consen 59 ALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKH--------------SSNYPVL 124 (354)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHh--------------ccccHHH
Confidence 34578899999999999999999999999999999999999998877777777775432 2223333
Q ss_pred HHHHHHHHHhhhccccc-ccee---eecccCChhhhhhHHHHHHH-HHHHHHHHHHHHhHHHHhccch---hhHHHHHHH
Q 035548 386 VILVCVFVAGFAWSWGP-ICWL---ISSEIYPLETRNAGYFFAVS-TNMVFTFVIAQAFLSMLCKMRW---GIFFFFTGW 457 (518)
Q Consensus 386 ~~~~~~~~~~~~~~~~~-~~~~---~~~~~~p~~~r~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 457 (518)
++.=++.+......+.. =.|. .-..-+|++..+..++.... .+.+.++.+..+...+.+..+. .++..-..+
T Consensus 125 ~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~ 204 (354)
T PF05631_consen 125 LLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVL 204 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHH
Confidence 33323333332222110 0111 11233566665666665552 3444556666666666665543 355555555
Q ss_pred HHHHHHHHHhcccCCCCC
Q 035548 458 LLISLIFSATMLPETKGI 475 (518)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~ 475 (518)
..++.+++....+|..+.
T Consensus 205 l~~~~~~I~~~W~ENyg~ 222 (354)
T PF05631_consen 205 LAVAAVLILKTWPENYGD 222 (354)
T ss_pred HHHHHHHHHhcccccCCC
Confidence 556666555566666543
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.6e-05 Score=78.03 Aligned_cols=152 Identities=11% Similarity=-0.041 Sum_probs=104.6
Q ss_pred HHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHH
Q 035548 309 QTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVIL 388 (518)
Q Consensus 309 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (518)
++.++...+.+...+.+.++.+++.+.++.+.||++-.+.+....+...+..++-.. .++.+..++.
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~-------------~~s~~~~ial 140 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAA-------------VHSFPGLIAL 140 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH-------------HhhhHHHHHH
Confidence 344566678889999999999999999999999999555544333333222222211 1233333344
Q ss_pred HHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHh------ccchh-hHHHHHHHHHHH
Q 035548 389 VCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLC------KMRWG-IFFFFTGWLLIS 461 (518)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~ 461 (518)
-++.+..-+ +..|....++...+.+++|+.-+|+.++...+|+++++.+...+.+ ..||. .|.+-+++.++.
T Consensus 141 r~llGl~es-~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~ 219 (495)
T KOG2533|consen 141 RFLLGLFES-GGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVL 219 (495)
T ss_pred HHHHHHHhc-ccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHH
Confidence 444444444 4445556778999999999999999999999999999999887644 23443 566666777777
Q ss_pred HHHHHhcccCCCC
Q 035548 462 LIFSATMLPETKG 474 (518)
Q Consensus 462 ~~~~~~~~~~~~~ 474 (518)
++++++++|+...
T Consensus 220 gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 220 GIVVFFFLPDNPS 232 (495)
T ss_pred HheEEEEecCChh
Confidence 7778888876544
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=7.5e-05 Score=72.77 Aligned_cols=137 Identities=15% Similarity=0.099 Sum_probs=99.7
Q ss_pred HHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccc
Q 035548 325 SGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPIC 404 (518)
Q Consensus 325 ~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (518)
.++..++.+...|.++|++|||..+.+......+....+.+.. ++.++ ..-..++ ........
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~---------------~~~~~-~~~l~g~-~~~~~s~~ 133 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG---------------YWFFL-LLGLSGG-FSAIFSVG 133 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH---------------HHHhh-hcccccc-hhhhhhhh
Confidence 3677888899999999999999999888777777666665521 22222 1111222 22223455
Q ss_pred eeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchh-hHHHHHHHHHHHHHHHHhcccCCCCCCHH
Q 035548 405 WLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWG-IFFFFTGWLLISLIFSATMLPETKGIPID 478 (518)
Q Consensus 405 ~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (518)
.++.++....+.|....|+.+.....+..++|.+.+.+.+..+.. .+.+..+..++..+....++||+..++.+
T Consensus 134 ~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~ 208 (463)
T KOG2816|consen 134 FAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKER 208 (463)
T ss_pred hhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccc
Confidence 678899999999999999999999999999999999999888754 55555555666666677778887665543
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00091 Score=65.14 Aligned_cols=90 Identities=10% Similarity=0.020 Sum_probs=51.4
Q ss_pred cHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhcc--ccCC--Ccch--HHHH
Q 035548 131 NLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTS--RIHP--YGWR--ISLG 204 (518)
Q Consensus 131 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~--~~~~--~~wr--~~f~ 204 (518)
.++..++.-++.|++.+........+.+. +|++. +..+..+.+++.+++.++..... ..+. ..++ .-|.
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~~-fp~~~----~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~ 179 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGLAGV-FPSTY----SSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFG 179 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhccc-CCHHH----HHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHH
Confidence 46677777889999999888888887764 66543 44444555555555444422211 1110 1122 3344
Q ss_pred hhhHHHHHHHHHhhcccCChh
Q 035548 205 GAAVPALFLLLGSCIIVETPA 225 (518)
Q Consensus 205 ~~~~~~~~~~~~~~~~~e~p~ 225 (518)
+..++.+++++....+++.|.
T Consensus 180 ~a~~v~l~~i~~~~~l~k~~~ 200 (437)
T TIGR00939 180 TPCVVQLICIVCYLLLPKLPF 200 (437)
T ss_pred HHHHHHHHHHHHHHHHhcCHH
Confidence 455555556666666776664
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00082 Score=64.25 Aligned_cols=139 Identities=14% Similarity=0.095 Sum_probs=77.1
Q ss_pred HHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhh-----
Q 035548 30 AAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLASIVCR----- 104 (518)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~d----- 104 (518)
+.+.++++|...+.... ++|-+.++- . -++|.+|.+...-+ ...+ -.-++|.++.|
T Consensus 5 L~~LY~lQGiP~GL~~g--siPflL~~~-------------~--~~~sy~q~~~fSla-~~Pf-SlKlLWaPiVDs~y~~ 65 (544)
T PF13000_consen 5 LVLLYFLQGIPLGLAFG--SIPFLLQSM-------------A--KKVSYSQQAIFSLA-SYPF-SLKLLWAPIVDSVYSK 65 (544)
T ss_pred HHHHHHHcCcccccccc--cchhhhccc-------------c--CCCChhHheeeeee-echh-HHHHhhhhhhhhhccc
Confidence 34556888888887521 224444331 0 15666665543211 1111 12245555555
Q ss_pred hhccHHHHHHHH-HHHHHHHHHHHhhc------------------------cHHHHHHHHHHhhhhhhcccchhhhHHHh
Q 035548 105 KFGRKPTIQAAS-VFFLIGAILNCLAQ------------------------NLGMLIAGRLSLGIGVGFGNQAVPLFISE 159 (518)
Q Consensus 105 r~Grr~~l~~~~-~l~~~~~~~~~~~~------------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~ 159 (518)
|+||||..++-. .+.++..+..+..- +...+.+.-++.=+-.+..-.+.-.+.-.
T Consensus 66 ~~GRRKSWiiP~Q~l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT 145 (544)
T PF13000_consen 66 RIGRRKSWIIPIQYLSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALT 145 (544)
T ss_pred ccCCcchhhhHHHHHHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhh
Confidence 899998766533 22222222222111 01122333333444455566666677777
Q ss_pred cCCCCcchhHHhHHHHHHHHHHHHHHHH
Q 035548 160 IAPPKYRGGLNICFQLLITVGILAANLI 187 (518)
Q Consensus 160 ~~~~~~r~~~~~~~~~~~~~G~~i~~~i 187 (518)
...+++++.+......+.+.|..++..+
T Consensus 146 ~Ls~~n~~~ASTcqtvG~~~Gyfls~tv 173 (544)
T PF13000_consen 146 MLSPENVGYASTCQTVGQTAGYFLSFTV 173 (544)
T ss_pred hcChhhcchHHHHHHhHhhhhHHHHHHH
Confidence 7888889999998888888888888777
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00048 Score=69.07 Aligned_cols=144 Identities=17% Similarity=0.142 Sum_probs=109.8
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHhhHHhhhhh-ccHHHHHHHHHHHHHHHHHHHhhcc---------------------
Q 035548 74 CKYDNQYLQLFTSSLYLAAIVACFLASIVCRKF-GRKPTIQAASVFFLIGAILNCLAQN--------------------- 131 (518)
Q Consensus 74 ~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~-Grr~~l~~~~~l~~~~~~~~~~~~~--------------------- 131 (518)
+|.+...+.-..+.+.-......+.+++++|-| ||-+++.++.++..++..+..++..
T Consensus 68 ~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~ 147 (571)
T KOG1237|consen 68 LHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESP 147 (571)
T ss_pred hccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCc
Confidence 366677777888888888888999999999975 8999999999998888655544211
Q ss_pred ----HHHHHHHHHHhhhhhhcccchhhhHHHhcCC---CCcc---hhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchH
Q 035548 132 ----LGMLIAGRLSLGIGVGFGNQAVPLFISEIAP---PKYR---GGLNICFQLLITVGILAANLINYGTSRIHPYGWRI 201 (518)
Q Consensus 132 ----~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~---~~~r---~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~ 201 (518)
...+..+.-+..+|.|+.-+...++-+|-++ ++++ ...+.++....++|.+++..+ .....++.+|.+
T Consensus 148 s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~--~vyiq~~~~w~l 225 (571)
T KOG1237|consen 148 SKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTV--LVYIQDNVGWKL 225 (571)
T ss_pred chHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHH--HHhhhhccccee
Confidence 1356777788888999999999999999998 3222 367788888899999988877 444334569999
Q ss_pred HHHhhhHHHHHHHHHhhc
Q 035548 202 SLGGAAVPALFLLLGSCI 219 (518)
Q Consensus 202 ~f~~~~~~~~~~~~~~~~ 219 (518)
-|.+..+..++++++++.
T Consensus 226 gf~i~~~~~~lai~iF~~ 243 (571)
T KOG1237|consen 226 GFGIPTVLNALAILIFLP 243 (571)
T ss_pred eccHHHHHHHHHHHHHHc
Confidence 998887776665555443
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.96 E-value=6.1e-05 Score=53.12 Aligned_cols=62 Identities=13% Similarity=0.278 Sum_probs=54.1
Q ss_pred HhhchhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHH
Q 035548 293 QLTGINVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAI 354 (518)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 354 (518)
.+++...+.-|.+.++++.|+++.+.|.+..+..+..+++.++.|.++||.++++.......
T Consensus 12 ~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~ 73 (77)
T PF12832_consen 12 YFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL 73 (77)
T ss_pred HHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence 34456677888999999999999999999999999999999999999999999888765443
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0066 Score=57.12 Aligned_cols=90 Identities=9% Similarity=-0.034 Sum_probs=49.6
Q ss_pred cHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHH---HhhccccCCCcchHHHHhhh
Q 035548 131 NLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLI---NYGTSRIHPYGWRISLGGAA 207 (518)
Q Consensus 131 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i---~~~~~~~~~~~wr~~f~~~~ 207 (518)
.++..++.-.+.|++.|..........++ +|++.-.-.+ ++.++++.+..++ ..........+=..-|.+..
T Consensus 116 ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytqavm----~G~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s~ 190 (406)
T KOG1479|consen 116 FFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQAVM----SGQALAGTLTSLLRILTKAAFSDSRTSALIYFITST 190 (406)
T ss_pred hHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHHHHH----hcchhHhHHHHHHHHHHHHhcCCCCceeehhHHHHH
Confidence 45667777888889888888877777666 6666433222 2223333322222 11122122123334455566
Q ss_pred HHHHHHHHHhhcccCChh
Q 035548 208 VPALFLLLGSCIIVETPA 225 (518)
Q Consensus 208 ~~~~~~~~~~~~~~e~p~ 225 (518)
++.++++++...+|..|-
T Consensus 191 ~~~llC~i~y~~l~~lpf 208 (406)
T KOG1479|consen 191 VILLLCFVLYLVLPKLPF 208 (406)
T ss_pred HHHHHHHHHHHHhhcchH
Confidence 666667777776777664
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00015 Score=69.89 Aligned_cols=109 Identities=23% Similarity=0.313 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHHHHHhh--c-c------HHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCc---chhHHhHHHHHH
Q 035548 110 PTIQAASVFFLIGAILNCLA--Q-N------LGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKY---RGGLNICFQLLI 177 (518)
Q Consensus 110 ~~l~~~~~l~~~~~~~~~~~--~-~------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~ 177 (518)
|+++++.++..+|.++..++ + . .+.++++-.+.++|.|+.-|...++++|.+++++ |.+.+.++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 56788889999998885443 2 2 3678999999999999999999999999998763 567888999999
Q ss_pred HHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcc
Q 035548 178 TVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCII 220 (518)
Q Consensus 178 ~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 220 (518)
++|..++..+...+. ++.||.+.|.+.++..++.++..+.-
T Consensus 82 n~G~~~~~~~~~~i~--~~~~~~~~f~i~~~~~~~~~~~f~~~ 122 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQ--QNYGWFLGFGIPAIGMLLALIVFLSG 122 (372)
T ss_dssp HHHHHHHHHCCCHHH--HCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhHhhcccchhhc--cccchhhhhhHHHHHHHHHHHHHHhC
Confidence 999999998855554 44699999999988877766655543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.034 Score=54.79 Aligned_cols=117 Identities=14% Similarity=0.012 Sum_probs=79.1
Q ss_pred ChhHHHHHHHHHHH-HHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhh---------cc---------------
Q 035548 77 DNQYLQLFTSSLYL-AAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLA---------QN--------------- 131 (518)
Q Consensus 77 s~~~~~~~~s~~~l-~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~---------~~--------------- 131 (518)
+.+.+..+-....+ +..+...+..++++|++|.+++-+....+.....++++. ++
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 45566666665555 345567788999999999998887776666665555542 11
Q ss_pred -------HHHHHHHHHHhhhhhhcccc-hhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccc
Q 035548 132 -------LGMLIAGRLSLGIGVGFGNQ-AVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSR 193 (518)
Q Consensus 132 -------~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~ 193 (518)
.|.+.+.-++.-+-.....+ .-..+..|.++.+|-.|..++++.+.++|.++++.+......
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222333333332233333 456778999999999999999999999999998887665554
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0017 Score=66.48 Aligned_cols=136 Identities=7% Similarity=0.064 Sum_probs=89.3
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhc-cCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchh
Q 035548 304 APVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDK-AGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPA 382 (518)
Q Consensus 304 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (518)
..++.+.+|++...+..+...+....-+..++++++.|+ +|+++.+.++.++..++..++.+... .........
T Consensus 11 vlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~-----~~~~~~~~~ 85 (654)
T TIGR00926 11 VLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAI-----PSSGHPLHD 85 (654)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccC-----cccccchHH
Confidence 333445678888888777777777777888999999997 69999999888888888776655211 000000111
Q ss_pred HHHHHHHHHHHHhhhccccccceeeecccCChh---hhhhHHHHHHHHHHHHHHHHHHHhHHHHhc
Q 035548 383 KVVVILVCVFVAGFAWSWGPICWLISSEIYPLE---TRNAGYFFAVSTNMVFTFVIAQAFLSMLCK 445 (518)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 445 (518)
...++.+.+..++.+ +.-|...+...|.++++ .+-..+.+.....++|+.+++.+.+++.+.
T Consensus 86 ~~~l~gLaLia~G~G-giKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~ 150 (654)
T TIGR00926 86 LLDLLGLALIALGTG-GIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGD 150 (654)
T ss_pred HHHHHHHHHHHhhcc-ccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222233333333333 23344456667777643 466778888889999999999999988754
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00018 Score=50.76 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=41.4
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHH
Q 035548 74 CKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFF 119 (518)
Q Consensus 74 ~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~ 119 (518)
.|++..++|.+.++..+...++++++|.++||+|+++.++....+.
T Consensus 30 ~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 30 LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 3999999999999999999999999999999999988877765543
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0009 Score=58.42 Aligned_cols=55 Identities=15% Similarity=0.068 Sum_probs=38.1
Q ss_pred CcchhHHhHHHHHHHHHHHHHHHHHhhccc-----cCCCcchHHHHhhhHHHHHHHHHhhcc
Q 035548 164 KYRGGLNICFQLLITVGILAANLINYGTSR-----IHPYGWRISLGGAAVPALFLLLGSCII 220 (518)
Q Consensus 164 ~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~-----~~~~~wr~~f~~~~~~~~~~~~~~~~~ 220 (518)
|+|+....+...+.++|.++.... ++.. ....+|++.+.+.+++.++-+++...+
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ip--F~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIP--FLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CccceeeeeccccchhhHHHHHhh--HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567777788888899998887665 3332 111469999998888877755555444
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0058 Score=59.78 Aligned_cols=129 Identities=8% Similarity=-0.027 Sum_probs=80.9
Q ss_pred hHHHHHHHHHHHHHHHH-hhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCC----------CCCCch---
Q 035548 316 NASLLSAVISGTINVAS-TLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTN----------TMPTVP--- 381 (518)
Q Consensus 316 ~~~~~~~~~~~~~~~~~-~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~--- 381 (518)
+...++-+...+...+. .++.+++++|++|++++............++++..+......+ ..+.+.
T Consensus 43 e~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~ 122 (472)
T TIGR00769 43 EIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGF 122 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHH
Confidence 45555555554444444 7888999999999999887777777666666655331100000 000000
Q ss_pred ----hHHHHHHHHHHHHhhhccccc-cceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHh
Q 035548 382 ----AKVVVILVCVFVAGFAWSWGP-ICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLC 444 (518)
Q Consensus 382 ----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 444 (518)
..+......+..-.++....+ +.|.+++|.+..++..+-+++....+++|..+++.+...+.+
T Consensus 123 i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 123 IAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111222222222322233 678899999999999999999999999999999999888763
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.50 E-value=1.8e-05 Score=79.00 Aligned_cols=150 Identities=7% Similarity=-0.148 Sum_probs=0.6
Q ss_pred hhchhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhccc
Q 035548 294 LTGINVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLT 373 (518)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (518)
...........+.+-++++++..++|++.+..-++.++..++..++.+|-+|-+.+-.+.++++++.+++.+-......+
T Consensus 16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y 95 (539)
T PF03137_consen 16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPY 95 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCC
Confidence 33444445555666678899999999999999999999999999999998888888899999999988877643322111
Q ss_pred CC---------------------------------CCCCchhHHHHHHHHHHHHhhhc---cccccceeeecccCChhhh
Q 035548 374 TN---------------------------------TMPTVPAKVVVILVCVFVAGFAW---SWGPICWLISSEIYPLETR 417 (518)
Q Consensus 374 ~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~r 417 (518)
.. ............++++.....+. ...++..+|+-|..+++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~s 175 (539)
T PF03137_consen 96 SYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNS 175 (539)
T ss_dssp --------------------------------------------------------SSS---------------------
T ss_pred ccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccC
Confidence 00 00011111112222222222222 2335667899999999998
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHH
Q 035548 418 NAGYFFAVSTNMVFTFVIAQAFLSML 443 (518)
Q Consensus 418 ~~~~g~~~~~~~~~~~~~~~~~~~~~ 443 (518)
+...|+......+|.++|=.+.+..+
T Consensus 176 plYiGi~~~~~~lGPa~Gf~lg~~~L 201 (539)
T PF03137_consen 176 PLYIGILYAMSILGPALGFLLGSFCL 201 (539)
T ss_dssp --------------------------
T ss_pred ccchhhhhHHhhccHHHHHHHHHHHH
Confidence 88899998888888877766665544
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0031 Score=63.96 Aligned_cols=163 Identities=8% Similarity=-0.144 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHH
Q 035548 282 LICGTFIHMLQQLTGINVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQC 361 (518)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 361 (518)
++....+..+.+......+......+-++++++..+.|++...+-++..+......+...|..|-+.+-++.++++++.+
T Consensus 98 fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsl 177 (735)
T KOG3626|consen 98 FLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSL 177 (735)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHH
Confidence 34444444444333334444444555567799999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHhcc----------------------------------cCCCC---CCch-hHHHHHHHHHHHHhhhcccccc
Q 035548 362 AIGVILKMFLL----------------------------------TTNTM---PTVP-AKVVVILVCVFVAGFAWSWGPI 403 (518)
Q Consensus 362 ~~~~~~~~~~~----------------------------------~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~ 403 (518)
+..+-..+.-. ..+.. ..+. .+..+++.-++.+.......++
T Consensus 178 l~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tl 257 (735)
T KOG3626|consen 178 LFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTL 257 (735)
T ss_pred HHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccC
Confidence 88765332110 00000 0111 2222222222222223334456
Q ss_pred ceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHh
Q 035548 404 CWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLC 444 (518)
Q Consensus 404 ~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 444 (518)
..+|+-|...++......|+...+..+|.++|=.+.+....
T Consensus 258 GisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~ 298 (735)
T KOG3626|consen 258 GISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLK 298 (735)
T ss_pred CCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 67888999998888889999999888888887777766654
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.011 Score=59.14 Aligned_cols=116 Identities=13% Similarity=0.019 Sum_probs=70.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHH--HH-HHHHHHHhhc----cH-HHHHHHHHHhhhhh
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVF--FL-IGAILNCLAQ----NL-GMLIAGRLSLGIGV 146 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l--~~-~~~~~~~~~~----~~-~~l~~~r~l~G~~~ 146 (518)
|-+..+.+.+.+++++|.++|+.+++++.++.-++.. .+-+.+ .+ ++..+..... .+ ..++..-++.|+..
T Consensus 46 G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~ 124 (521)
T PRK03612 46 GDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLI 124 (521)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888999999999999999999988744333322 221111 11 1111111111 11 22334456678888
Q ss_pred hcccchhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhcc
Q 035548 147 GFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTS 192 (518)
Q Consensus 147 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~ 192 (518)
|+..|....+..+... ++-++..|-.+....+|.++|.++.+++.
T Consensus 125 G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vL 169 (521)
T PRK03612 125 GMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLL 169 (521)
T ss_pred HHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHH
Confidence 8888887777665332 22456677777777888888877765544
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0049 Score=58.30 Aligned_cols=127 Identities=15% Similarity=0.036 Sum_probs=84.4
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhH--HHHHH
Q 035548 311 MGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAK--VVVIL 388 (518)
Q Consensus 311 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 388 (518)
+| +.+.+-+...++.+..++..+.+-|+.||.|-|....++....+++..+=.+...-. -++..+ .....
T Consensus 75 Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~-------v~~~f~~~l~~~G 146 (480)
T KOG2563|consen 75 YG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPF-------VPPLFRRPLTHTG 146 (480)
T ss_pred hc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCcc-------ccccchhhhhHHh
Confidence 35 566677888899999999999999999999999999999988888887765532100 001222 11122
Q ss_pred HHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhcc
Q 035548 389 VCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKM 446 (518)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 446 (518)
-.+......... .++.-...-.+|+++|+++..+..+.+.+|..++..+-..+..+.
T Consensus 147 q~iaa~Aq~Fim-~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~ 203 (480)
T KOG2563|consen 147 QSIAAAAQPFIL-GLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS 203 (480)
T ss_pred HHHHHHhhhHhh-ccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence 222111111111 122223455789999999999999998899888877776666554
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.17 Score=48.89 Aligned_cols=118 Identities=12% Similarity=0.006 Sum_probs=84.0
Q ss_pred CChhHHHHHHHHHHH-HHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhh---------ccH-------------
Q 035548 76 YDNQYLQLFTSSLYL-AAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLA---------QNL------------- 132 (518)
Q Consensus 76 ~s~~~~~~~~s~~~l-~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~---------~~~------------- 132 (518)
.+++.+..+-+..-+ +..+..++.++++++..|.+++-..+..+....+++++. +++
T Consensus 58 ~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~ 137 (509)
T COG3202 58 QGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMF 137 (509)
T ss_pred CcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCcc
Confidence 456677888888877 678888999999999999999988888887777777763 110
Q ss_pred ----------HHHHHHHHHhhhhhhcccc-hhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhccc
Q 035548 133 ----------GMLIAGRLSLGIGVGFGNQ-AVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSR 193 (518)
Q Consensus 133 ----------~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~ 193 (518)
|...+.-.+.=+-.+.... .-.....|.++.+|-.|..+.++.+.+++.+++..+...+..
T Consensus 138 l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 138 LKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred ceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2222222222222222222 344567788888888999999999999999999888666654
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.006 Score=59.83 Aligned_cols=156 Identities=16% Similarity=0.128 Sum_probs=90.5
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccC-----ChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCC
Q 035548 304 APVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAG-----RKILLVQAAIQMIICQCAIGVILKMFLLTTNTMP 378 (518)
Q Consensus 304 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (518)
.+++.+++|+++.+...+.....+... ..++.|.++|-+. ||..+.++.++..++.+.+..... .
T Consensus 13 ~~~l~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~---------~ 82 (433)
T PF03092_consen 13 YPFLKDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPA---------S 82 (433)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccc---------c
Confidence 344557789999888777666655554 4678899999872 445555565555554444444311 0
Q ss_pred CchhHHHHHHHHHHHHhhhccccccceeeecccC---ChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchh-hHHHH
Q 035548 379 TVPAKVVVILVCVFVAGFAWSWGPICWLISSEIY---PLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWG-IFFFF 454 (518)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 454 (518)
..+.....+.+.+...+....- -+.-++..|.. |.+ +|...+.......+|+.++..+.|.+.+..++. .+.+.
T Consensus 83 ~~s~~~~~~~l~la~~g~a~~D-V~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~ 160 (433)
T PF03092_consen 83 ESSAAIAVVLLFLASFGYAFAD-VAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLIS 160 (433)
T ss_pred cchhhhHHHHHHHHHHHHHHHH-HhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHH
Confidence 1122222222223222222221 12234445554 333 778888888899999999999999999887744 44444
Q ss_pred HHHHHHHHHHHHhcccC
Q 035548 455 TGWLLISLIFSATMLPE 471 (518)
Q Consensus 455 ~~~~~~~~~~~~~~~~~ 471 (518)
..+..+..+....+.+|
T Consensus 161 ~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 161 AALPLLMLIVALFLLEE 177 (433)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 44444444444444444
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.019 Score=46.81 Aligned_cols=110 Identities=14% Similarity=-0.016 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhc
Q 035548 319 LLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAW 398 (518)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (518)
..-..+......+..++.+.+.+++|.|+.+.++.+...+-...... ...+..+....+.+.+.+.
T Consensus 40 ~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~--------------~~~~~l~~~s~l~G~~~a~ 105 (156)
T PF05978_consen 40 YYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY--------------PNSYTLYPASALLGFGAAL 105 (156)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh--------------hhHHHHHHHHHHHhhhhHH
Confidence 34445556666777788899999999999998887776655444322 2345555666666666666
Q ss_pred cccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHH
Q 035548 399 SWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSML 443 (518)
Q Consensus 399 ~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 443 (518)
.+.+. ..++.+...++.+++..++.-.+...+.++|..+.-.+.
T Consensus 106 lW~aq-g~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 106 LWTAQ-GTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred hhHhh-hHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66544 356678888889999988888888877777776654443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0099 Score=56.47 Aligned_cols=110 Identities=14% Similarity=0.063 Sum_probs=81.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHH-----HHHHHHHHhhccHHHHHHHHHHhhhhhhcccc
Q 035548 77 DNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFF-----LIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQ 151 (518)
Q Consensus 77 s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~-----~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 151 (518)
..++..+...+|.+|..++.--...+ |+ |++.+...+-. .+.....-+.++.|..++.-+..|+..|..++
T Consensus 279 ~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YV 354 (402)
T PF02487_consen 279 PRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYV 354 (402)
T ss_pred HHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHH
Confidence 45677888888888877775433221 33 33333332222 12222333468899999999999999999999
Q ss_pred hhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhh
Q 035548 152 AVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYG 190 (518)
Q Consensus 152 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~ 190 (518)
.....+.|-.++++|-.+++..+.+-++|..++.+++..
T Consensus 355 NtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~ 393 (402)
T PF02487_consen 355 NTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLP 393 (402)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998644
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.04 Score=52.51 Aligned_cols=158 Identities=12% Similarity=0.029 Sum_probs=91.4
Q ss_pred HhHHHHHHH-cCCCChHHHHHHHHH-HHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 035548 302 FYAPVLFQT-MGYGSNASLLSAVIS-GTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPT 379 (518)
Q Consensus 302 ~~~~~~~~~-~g~~~~~~~~~~~~~-~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (518)
+..|++.+. .|++.++..--..+. .-..++.-+....+.|.++.|.+++.+.+...+...++.+.
T Consensus 25 fl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~------------- 91 (412)
T PF01770_consen 25 FLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFG------------- 91 (412)
T ss_pred cchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-------------
Confidence 344555544 688877654333322 33344556677889999999999988877766666555442
Q ss_pred chhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccc--hhhHHHHHHH
Q 035548 380 VPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMR--WGIFFFFTGW 457 (518)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 457 (518)
......-+.-+.++...+.- ...++++-...|++.--++.+......-+|.+++..+...+....+ +.....+...
T Consensus 92 ~sv~~mq~~q~~yg~~~a~e--vay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~ 169 (412)
T PF01770_consen 92 TSVLAMQLMQFFYGLATAAE--VAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLA 169 (412)
T ss_pred CcHHHHHHHHHHHHHHHHHH--HHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 22223333333333332221 1223444455667666777888888887888887777776665433 3344344444
Q ss_pred HHHHHHHHHhcccCCCC
Q 035548 458 LLISLIFSATMLPETKG 474 (518)
Q Consensus 458 ~~~~~~~~~~~~~~~~~ 474 (518)
+...+++..+++|..++
T Consensus 170 ~~~~a~~~~~fLP~~~~ 186 (412)
T PF01770_consen 170 SVSLALLIALFLPMPKR 186 (412)
T ss_pred HHHHHHHHHHHcCCCCc
Confidence 45555555566776543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0083 Score=42.77 Aligned_cols=69 Identities=13% Similarity=0.070 Sum_probs=60.6
Q ss_pred hHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHH
Q 035548 298 NVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVI 366 (518)
Q Consensus 298 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (518)
+.++-.+|.+.++.+++..+.+++.+...++.++|.+...++.++.++++.+..+.+...+..+.+++.
T Consensus 9 FayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 9 FAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667899999999999999999999999999999999999999888888888888888888777763
|
Note that many members are hypothetical proteins. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.18 Score=48.96 Aligned_cols=172 Identities=9% Similarity=-0.008 Sum_probs=89.1
Q ss_pred hHHHHhHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCC
Q 035548 298 NVVMFYAPVLFQTM-GYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNT 376 (518)
Q Consensus 298 ~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (518)
-...+-.+.++.+. .-+-.-.+.+...-.+..++.+...|.+.||..|.+....+.+..-++..+-.......+.....
T Consensus 19 R~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~ 98 (432)
T PF06963_consen 19 RMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSS 98 (432)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 34455556666554 23444556666777788888889999999999999887766654444333322222111111111
Q ss_pred CC--CchhHHHHHHHHHHHHhhhcccccccee----eecccC--ChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccch
Q 035548 377 MP--TVPAKVVVILVCVFVAGFAWSWGPICWL----ISSEIY--PLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRW 448 (518)
Q Consensus 377 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (518)
.. .......+....+.......+......+ ++..+. +++.....++...-+-.....++|.+.|.+.+..+.
T Consensus 99 ~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~ 178 (432)
T PF06963_consen 99 SSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASP 178 (432)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCH
Confidence 00 1111111111112221111111111111 111222 344556666666667778999999999999987764
Q ss_pred h-hHHHHHHHHHHHHHHHHhcc
Q 035548 449 G-IFFFFTGWLLISLIFSATML 469 (518)
Q Consensus 449 ~-~~~~~~~~~~~~~~~~~~~~ 469 (518)
. ....+++..++...+=++++
T Consensus 179 ~~~~~~i~~~N~~S~~vEy~~l 200 (432)
T PF06963_consen 179 VIAAIFIAGWNLASVFVEYFLL 200 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4 33444444555544444443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.007 Score=57.34 Aligned_cols=159 Identities=13% Similarity=0.070 Sum_probs=96.7
Q ss_pred hHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhc----cCChHHHHH-hHH
Q 035548 280 PQLICGTFIHMLQQLTGINVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDK----AGRKILLVQ-AAI 354 (518)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~~~~~~~~~-~~~ 354 (518)
.+++....+.+..++ ++..-..|.+.+++..|.+....+.......+.+++.+++.|..+|| +||||..+. +..
T Consensus 32 ~~li~v~~ia~Gvqf-~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQF-GWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHH-HHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 444444555555544 35566778888889999999988888888889999999999999996 688877654 444
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCC-chhHHHHH---HHHHHHHhhhccccccceeeecccCChhhhhh-HHHHHHHHHH
Q 035548 355 QMIICQCAIGVILKMFLLTTNTMPT-VPAKVVVI---LVCVFVAGFAWSWGPICWLISSEIYPLETRNA-GYFFAVSTNM 429 (518)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~-~~g~~~~~~~ 429 (518)
...+++++++....+.....+.... .....+.+ .+-+.-........ .+-++..|+...+++.+ +++....+..
T Consensus 111 ~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qg-p~ra~L~Dl~~~d~~~~~Ans~f~~f~a 189 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQG-PCRALLADLARGDAKKTRANSVFSFFMA 189 (498)
T ss_pred HHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhh-hHHHHHHHhccChhhhhccchhHHHHHH
Confidence 5556666665554333222222111 11111111 11111222222222 23466788887777777 8888888888
Q ss_pred HHHHHHHHHhH
Q 035548 430 VFTFVIAQAFL 440 (518)
Q Consensus 430 ~~~~~~~~~~~ 440 (518)
+|+.++=.+.+
T Consensus 190 vGnvLGY~~g~ 200 (498)
T KOG0637|consen 190 VGNVLGYALGS 200 (498)
T ss_pred hcceeeeeccc
Confidence 87777544443
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.00069 Score=63.12 Aligned_cols=118 Identities=7% Similarity=-0.117 Sum_probs=2.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhcc-CChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhc
Q 035548 320 LSAVISGTINVASTLVAIVLVDKA-GRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAW 398 (518)
Q Consensus 320 ~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (518)
.....+.++..+|+.+..+..-+. .+|.+.. ..+.=.+..-++.++..............+.+..++...+++...+
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~-~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNG- 263 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWI-LSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNG- 263 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHH-HHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccc-
Confidence 346678899999999888753221 2333332 2111111111111110000000000001122223333333333322
Q ss_pred cccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHh
Q 035548 399 SWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAF 439 (518)
Q Consensus 399 ~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~ 439 (518)
-..+....+..+..++++|..+..+....-.+|-.+|..+.
T Consensus 264 yl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 264 YLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp ---HHHH----------------------------------
T ss_pred hhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22345556778888888888777666666666666655543
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.38 Score=46.84 Aligned_cols=102 Identities=24% Similarity=0.303 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHhhHHhhh---hhccHHHHHHHHHHHHHHHHHHHhh------------------ccHHHHHHHHHHhh
Q 035548 85 TSSLYLAAIVACFLASIVCR---KFGRKPTIQAASVFFLIGAILNCLA------------------QNLGMLIAGRLSLG 143 (518)
Q Consensus 85 ~s~~~l~~~i~~~~~G~l~d---r~Grr~~l~~~~~l~~~~~~~~~~~------------------~~~~~l~~~r~l~G 143 (518)
.-...+|..+++.+.+.+++ |+||++.+.++..+..++.++.-.. +++...++.-+++|
T Consensus 285 ~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G 364 (461)
T KOG3098|consen 285 SIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLG 364 (461)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHh
Confidence 33344555666666777775 5789999999999988888776553 24567788889999
Q ss_pred hhhhcccchhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHH
Q 035548 144 IGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLI 187 (518)
Q Consensus 144 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i 187 (518)
++-+......+.++.+.+ +++|..+.++...-..++..++...
T Consensus 365 ~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~ 407 (461)
T KOG3098|consen 365 FGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFF 407 (461)
T ss_pred hHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999 5668888888888877777776555
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.2 Score=46.30 Aligned_cols=135 Identities=17% Similarity=0.102 Sum_probs=82.0
Q ss_pred HHHHhHHHHHHHcCCCC--hHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCC
Q 035548 299 VVMFYAPVLFQTMGYGS--NASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNT 376 (518)
Q Consensus 299 ~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (518)
......+.+..+.+.+. ...+.......+...++.++.|.+.||.|||+.+..+......+.+...+.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~---------- 89 (338)
T COG0477 20 LLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALA---------- 89 (338)
T ss_pred hHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhC----------
Confidence 33445555556655554 367888888888888888999999999999977766665433332222221
Q ss_pred CCCchhHHHHHHHHHHHHhhhccccccceeeecccCCh-hhhhhHHHHHHH-HHHHHHHHHHHHhHHHHhc
Q 035548 377 MPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPL-ETRNAGYFFAVS-TNMVFTFVIAQAFLSMLCK 445 (518)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~r~~~~g~~~~-~~~~~~~~~~~~~~~~~~~ 445 (518)
.....+.........+.+.+ ...+....+..|..|. +.|+...+.... ....+..+++.+.+.+...
T Consensus 90 -~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 90 -PNVGLALLLILRLLQGLGGG-GLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred -ccchHHHHHHHHHHHHhhhH-HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112222222222222222 2335556777888887 677888888777 4667777777666666554
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.015 Score=51.97 Aligned_cols=138 Identities=11% Similarity=0.035 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhhhHHHhcC
Q 035548 82 QLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIA 161 (518)
Q Consensus 82 ~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 161 (518)
|.+.-+-.+...+..+..-...||+---+=+.+..++.+.+..+.+++++.++-+++-.+..++.|.....-.++-+. +
T Consensus 65 g~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~-Y 143 (409)
T KOG3880|consen 65 GAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSR-Y 143 (409)
T ss_pred chhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhcc-C
Confidence 444444455556666666777888643332345556777788888999999999999999999888877666665433 3
Q ss_pred CCCcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccCCh
Q 035548 162 PPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETP 224 (518)
Q Consensus 162 ~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p 224 (518)
++ ...+.++.+.+...++|..--.++....+.+-|...++...+-++.....+++.++|
T Consensus 144 ~~----~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~p 202 (409)
T KOG3880|consen 144 PS----IVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSP 202 (409)
T ss_pred CC----ceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCC
Confidence 32 234445555555555555443333332345678777777666666555555554444
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.85 Score=45.89 Aligned_cols=45 Identities=11% Similarity=0.049 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHh-ccch-hhHHHHHHHHHHHH
Q 035548 418 NAGYFFAVSTNMVFTFVIAQAFLSMLC-KMRW-GIFFFFTGWLLISL 462 (518)
Q Consensus 418 ~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~ 462 (518)
+...|-....+.+|+++|+.+.+.++- ..|. ...++.+.+.++++
T Consensus 144 g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a 190 (521)
T PRK03612 144 GHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAA 190 (521)
T ss_pred hhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 566777888889999999999887765 4552 34444444443333
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.96 E-value=2.7 Score=38.66 Aligned_cols=99 Identities=24% Similarity=0.297 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCC--c
Q 035548 88 LYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPK--Y 165 (518)
Q Consensus 88 ~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~--~ 165 (518)
..+..+.++++.+.+..++|.|.++.++...+...-. .=+-+.+..++-.-.+.|++.+..+..--+|+++.-... +
T Consensus 67 ~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA-~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~ 145 (390)
T KOG3097|consen 67 LYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIA-ANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQ 145 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-hhcchhHHhhccHHHhhccccccccccCcceecHHHHHHHHh
Confidence 4455566666777999999999999998877754322 223467889999999999999999888777776654321 2
Q ss_pred c-------------hhHHhHHHHHHHHHHHHHHHH
Q 035548 166 R-------------GGLNICFQLLITVGILAANLI 187 (518)
Q Consensus 166 r-------------~~~~~~~~~~~~~G~~i~~~i 187 (518)
| +..+.+++.....|.+++..+
T Consensus 146 ~~~q~~~~~~~~ffg~Ffii~~~~qv~gn~issli 180 (390)
T KOG3097|consen 146 RGEQAGDGMKVRFFGEFFIIFQCAQVWGNLISSLI 180 (390)
T ss_pred hhhhccCceeeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 2 344566666667776666655
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=94.89 E-value=2.1 Score=42.55 Aligned_cols=114 Identities=12% Similarity=0.060 Sum_probs=72.1
Q ss_pred HHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCch-------------hHH-------HHH
Q 035548 328 INVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVP-------------AKV-------VVI 387 (518)
Q Consensus 328 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~-------~~~ 387 (518)
+.++...+..++++++++.+++.+..........++++..+-.. +..+.+. .+. ...
T Consensus 71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~---~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~s 147 (491)
T PF03219_consen 71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNR---DILHPDAFADKLLAILPPGFKGFIAMFRNWTFS 147 (491)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhch---hhcCCCHHHHHhhhhccchHHHHHHHHHHHHHH
Confidence 34455677889999999999988777766666666665543110 0000000 000 000
Q ss_pred HHHHHHHhhhcc-ccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHh
Q 035548 388 LVCVFVAGFAWS-WGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLC 444 (518)
Q Consensus 388 ~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 444 (518)
...+..=..+.. ..-+.|.+++|.++.++..+.+++....++++..+++.+.....+
T Consensus 148 lfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 148 LFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111111 122567889999999999999999999999999999999888777
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.53 E-value=4.6 Score=38.61 Aligned_cols=56 Identities=11% Similarity=-0.091 Sum_probs=26.1
Q ss_pred HHHHHHHHhhchhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 035548 286 TFIHMLQQLTGINVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDK 342 (518)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 342 (518)
+++.........+.+.+-.+++.+.+-.++. +..+.....+...+..++...+--+
T Consensus 23 ~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~-~~~F~~~~~~~a~i~~ll~~~~n~~ 78 (406)
T KOG1479|consen 23 FLLLGIGTLLPWNMFITASDYYYYRFPGYHN-SKNFTSSYTLAAQIPLLLFNLLNAF 78 (406)
T ss_pred HHHHhcccccchHhhhccHHHHHhhcCCCch-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334456666667777766532222 3334444444444444444443333
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.72 E-value=6.8 Score=38.35 Aligned_cols=133 Identities=8% Similarity=-0.003 Sum_probs=81.8
Q ss_pred CCChHHHHHHHHHHH-HHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcc--cCC---------CCCCc
Q 035548 313 YGSNASLLSAVISGT-INVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLL--TTN---------TMPTV 380 (518)
Q Consensus 313 ~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---------~~~~~ 380 (518)
.+++...++-...-+ ++++..++..++.+++.+.+++...........+++++..+-.-. ..+ ..+..
T Consensus 58 ~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~ 137 (509)
T COG3202 58 QGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMF 137 (509)
T ss_pred CcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCcc
Confidence 344555554444444 566777888999999999999887777777777777665541100 000 00100
Q ss_pred --------hhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhc
Q 035548 381 --------PAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCK 445 (518)
Q Consensus 381 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 445 (518)
..|...+...+.-.-......-+.|..++|....++..+-+++.+...+++..+++.+..++.++
T Consensus 138 l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 138 LKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred ceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 00211111111111111122225567889999999999999999999999999999999887764
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.57 Score=45.10 Aligned_cols=119 Identities=8% Similarity=-0.004 Sum_probs=72.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChh---hhhhHHHH
Q 035548 347 ILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLE---TRNAGYFF 423 (518)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~r~~~~g~ 423 (518)
+.+.++.++..++.+++.+....... ..........+.+.+...+.+. .-|....+..|.++++ .|...+..
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~----~~~~~~~~~~~gL~lia~G~G~-~K~ni~~~~~dq~~~~~~~~~~~~F~~ 76 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSL----PSGIQLGLFYIGLALIAVGTGG-IKPNISPFGADQYDEDDDSRRDSFFNW 76 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC----------CHHHHHHHHHHHHHHC-CHHHHHHHHHHCSSTTTTTHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchh----hhhHHHHHHHHHHHHHHhcccc-ccccHHHHHHHHhcccchhhhhhhHHH
Confidence 45667777888888776554321000 0011122333333333333332 2345556677877765 46667778
Q ss_pred HHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHHHHHHHhccc
Q 035548 424 AVSTNMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLISLIFSATMLP 470 (518)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (518)
.....++|+.++..+.+++.++.++...+....++.+.+++.+...+
T Consensus 77 fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~ 123 (372)
T PF00854_consen 77 FYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGR 123 (372)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCC
Confidence 88899999999999999999999988777777776666666655543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=93.42 E-value=1.5 Score=42.77 Aligned_cols=50 Identities=14% Similarity=0.081 Sum_probs=28.7
Q ss_pred HhHHHHHHH--cCCCChHHHHHH---HHHHHHHHHHhhhhhhhhhccCChHHHHH
Q 035548 302 FYAPVLFQT--MGYGSNASLLSA---VISGTINVASTLVAIVLVDKAGRKILLVQ 351 (518)
Q Consensus 302 ~~~~~~~~~--~g~~~~~~~~~~---~~~~~~~~~~~~~~g~l~d~~~~~~~~~~ 351 (518)
.-.|+++++ .+.+-.+.+.+. -++++=-+-+.++=...++|+||||..++
T Consensus 21 gsiPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWii 75 (544)
T PF13000_consen 21 GSIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWII 75 (544)
T ss_pred ccchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhh
Confidence 357888877 566655544332 23333333333444556778999987654
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.15 Score=44.97 Aligned_cols=52 Identities=25% Similarity=0.238 Sum_probs=38.7
Q ss_pred hHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHH
Q 035548 303 YAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAI 354 (518)
Q Consensus 303 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 354 (518)
|.-++.+++|+...+.+.++.......++...+.|-+.||.|||+.-+.-.+
T Consensus 59 YvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtyci 110 (454)
T KOG4332|consen 59 YVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCI 110 (454)
T ss_pred eeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehH
Confidence 3334457788888888887777666777777888999999999987554333
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.47 E-value=9.6 Score=38.88 Aligned_cols=149 Identities=9% Similarity=0.076 Sum_probs=88.0
Q ss_pred HHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhcc-CChHHHHHhHHHHHHHHHHHHHHHHHhcccC-----
Q 035548 301 MFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKA-GRKILLVQAAIQMIICQCAIGVILKMFLLTT----- 374 (518)
Q Consensus 301 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 374 (518)
.....++...++.+...+.-.............+++++++|.+ ||.+.+.++.++..++..++.+.........
T Consensus 58 ~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~ 137 (571)
T KOG1237|consen 58 SNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKF 137 (571)
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccC
Confidence 4444555566777766666666667777777788999999975 8888888888888888777666544332111
Q ss_pred --C---CCCCchhHHHHHHHHHHHHh-hhccccccceeeecccCCh----hhhh--hHHHHHHHHHHHHHHHHHHHhHHH
Q 035548 375 --N---TMPTVPAKVVVILVCVFVAG-FAWSWGPICWLISSEIYPL----ETRN--AGYFFAVSTNMVFTFVIAQAFLSM 442 (518)
Q Consensus 375 --~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~----~~r~--~~~g~~~~~~~~~~~~~~~~~~~~ 442 (518)
. ..........++...+.... ...+.-|....+-+|-++. +.+. .-+.......++|..++..+..+.
T Consensus 138 ~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyi 217 (571)
T KOG1237|consen 138 KPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYI 217 (571)
T ss_pred CCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhh
Confidence 0 01111111122222222222 1223334445666777772 2222 456666777788888888888777
Q ss_pred Hhccchh
Q 035548 443 LCKMRWG 449 (518)
Q Consensus 443 ~~~~~~~ 449 (518)
.+..+|.
T Consensus 218 q~~~~w~ 224 (571)
T KOG1237|consen 218 QDNVGWK 224 (571)
T ss_pred hhcccce
Confidence 6766654
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=91.64 E-value=3.8 Score=40.30 Aligned_cols=29 Identities=10% Similarity=0.062 Sum_probs=14.6
Q ss_pred HHHHHHHHHhhhhhhhhhccCChHHHHHh
Q 035548 324 ISGTINVASTLVAIVLVDKAGRKILLVQA 352 (518)
Q Consensus 324 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~ 352 (518)
...+..++..+....+..|+..+.-+..+
T Consensus 53 ~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~ 81 (437)
T TIGR00939 53 ASQLPSLLFNSLNLFLIFRIPVTVRLLGG 81 (437)
T ss_pred HHHHHHHHHHHHHHHHhhccCccchhHHH
Confidence 34444555555555666666653333333
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.05 E-value=8 Score=35.95 Aligned_cols=85 Identities=15% Similarity=0.076 Sum_probs=59.2
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHH-----HHHHhh----ccHHHHHHHHHHhhhh
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGA-----ILNCLA----QNLGMLIAGRLSLGIG 145 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~-----~~~~~~----~~~~~l~~~r~l~G~~ 145 (518)
|=+--|.+.+.+.|..+..+|+...-++.|.--.-+.+..-+++..++. +-..|+ ++-+.+.+.-++.|.-
T Consensus 39 G~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~L 118 (508)
T COG4262 39 GGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGVL 118 (508)
T ss_pred CCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 3345677999999999999999998888876444333333222222221 111233 4667888899999999
Q ss_pred hhcccchhhhHHHh
Q 035548 146 VGFGNQAVPLFISE 159 (518)
Q Consensus 146 ~g~~~~~~~~~i~~ 159 (518)
.|...|..+.++..
T Consensus 119 VG~EiPL~mrml~~ 132 (508)
T COG4262 119 VGAEIPLLMRMLQR 132 (508)
T ss_pred HhcchHHHHHHHHH
Confidence 99999999999877
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.18 E-value=7.3 Score=36.84 Aligned_cols=66 Identities=20% Similarity=0.245 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhh-----ccCChHHHHH
Q 035548 282 LICGTFIHMLQQLTGINVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVD-----KAGRKILLVQ 351 (518)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----~~~~~~~~~~ 351 (518)
+....+++.. +..-.+... -.|.+++..|.|-.+.+.......= .---++...++| |+||||..++
T Consensus 33 illLl~LYll-QGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~P--~sLKllWaPiVDs~y~k~~GrrksWvv 103 (510)
T KOG3574|consen 33 ILLLLFLYLL-QGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYWP--FSLKLLWAPIVDSVYSKRFGRRKSWVV 103 (510)
T ss_pred HHHHHHHHHH-cCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhhH--HHHHHHHHhhhHHHHHHhhccccceee
Confidence 3444444433 334444444 7899998777776554433322110 011344555556 9999987543
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.29 E-value=3.2 Score=37.84 Aligned_cols=111 Identities=13% Similarity=0.084 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhhhh-hccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhhhHHH
Q 035548 80 YLQLFTSSLYLAAIVACFLASIVCRK-FGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFIS 158 (518)
Q Consensus 80 ~~~~~~s~~~l~~~i~~~~~G~l~dr-~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~ 158 (518)
|.-|....|.+|..++.--.-..--+ .---.++..-.+++.+...+..+.++++..++.-+.-|+-.|..++...--+.
T Consensus 289 qYRwyqvlYQlGVFiSRSS~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~ 368 (409)
T KOG3880|consen 289 QYRWYQVLYQLGVFISRSSINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIH 368 (409)
T ss_pred cchhhheeeeeeEEEEeccceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHh
Confidence 46788888877754432211111001 00011222333445555566677899999999999999988888888888888
Q ss_pred hcCCCCcchhHHhHHHHHHHHHHHHHHHHHhh
Q 035548 159 EIAPPKYRGGLNICFQLLITVGILAANLINYG 190 (518)
Q Consensus 159 ~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~ 190 (518)
+-.++++|-.+++...++-++|..++.+++..
T Consensus 369 ~e~~pd~rEfamsavs~sDS~Gi~lA~~lalp 400 (409)
T KOG3880|consen 369 KETEPDVREFAMSAVSISDSIGIFLAGLLALP 400 (409)
T ss_pred hcCCchHHHHhHhhheecchhhHHHHHHHhcc
Confidence 88899999999999999999999999988543
|
|
| >KOG2881 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.28 E-value=7.6 Score=34.12 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=15.2
Q ss_pred hhhhhhhhccCChHHHHHhHHHHHHH
Q 035548 334 LVAIVLVDKAGRKILLVQAAIQMIIC 359 (518)
Q Consensus 334 ~~~g~l~d~~~~~~~~~~~~~~~~~~ 359 (518)
+-+-+++.|+..|++.+++.+++.+.
T Consensus 258 igGk~lAskIS~rtVt~~ggi~Fi~F 283 (294)
T KOG2881|consen 258 IGGKYLASKISVRTVTLIGGILFIIF 283 (294)
T ss_pred hhhHHHhhhheeEEEEEecchhHHHH
Confidence 33345677777777766655544433
|
|
| >PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea | Back alignment and domain information |
|---|
Probab=83.31 E-value=4.8 Score=38.99 Aligned_cols=15 Identities=7% Similarity=0.031 Sum_probs=7.0
Q ss_pred HHHHhhhhhhhhhcc
Q 035548 329 NVASTLVAIVLVDKA 343 (518)
Q Consensus 329 ~~~~~~~~g~l~d~~ 343 (518)
.++..+..|++..|.
T Consensus 8 ~i~~ii~~G~~~~~~ 22 (385)
T PF03547_consen 8 PIFLIILLGYLLGRF 22 (385)
T ss_pred HHHHHHHHHHHHHHh
Confidence 334444455555544
|
Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 518 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 1e-47 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 518 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-05 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 7e-05
Identities = 57/390 (14%), Positives = 108/390 (27%), Gaps = 104/390 (26%)
Query: 13 KDFPAKLTGQVL--VCS--IIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRA 68
K + L VL V + AF ++ +TT + F
Sbjct: 241 KPYENCLL--VLLNVQNAKAWNAF-------NLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 69 KEDNYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAIL--- 125
+ ++ L YL L V P + S +I +
Sbjct: 292 DHHSMTLTPDEVKSLL--LKYLDCRPQD-LPREVL---TTNP--RRLS---IIAESIRDG 340
Query: 126 NCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRG----------GLNICFQL 175
N + +L + ++ + P +YR +I L
Sbjct: 341 LATWDNWKHVNCDKL---------TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391
Query: 176 L---------ITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPA- 225
L V ++ L Y P IS+ P+++L L + A
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI-----PSIYLEL-KVKLENEYAL 445
Query: 226 --SLIERGKQEQGLYTLRKIR----GVKDVEKEY--------AEICRATEISNLIKHPYR 271
S+++ Y + K + +Y + E L + +
Sbjct: 446 HRSIVDH-------YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL 498
Query: 272 SL------MKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQTMGYGSNASLLSAVIS 325
++ S G+ ++ LQQL FY P + L++A++
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTLQQLK------FYKP--YICDNDPKYERLVNAILD 550
Query: 326 GTINVASTLVAIVLVDKAGRKILLVQAAIQ 355
+ L+ D L++ A+
Sbjct: 551 FLPKIEENLICSKYTD-------LLRIALM 573
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 518 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.98 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.95 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.95 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.4 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.36 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.27 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.24 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.24 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.21 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.08 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-49 Score=395.50 Aligned_cols=445 Identities=29% Similarity=0.511 Sum_probs=358.7
Q ss_pred hHHHHHHHHHHHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHHHHHHHHHhh
Q 035548 20 TGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLA 99 (518)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~ 99 (518)
+++.+.++++++++.+++|||.++++.+. |.+.++|..+ .+...+.+..+.|++.+++.+|..+|++++
T Consensus 7 ~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~--~~~~~~~~~~---------~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~ 75 (491)
T 4gc0_A 7 SSYIFSITLVATLGGLLFGYDTAVISGTV--ESLNTVFVAP---------QNLSESAANSLLGFCVASALIGCIIGGALG 75 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGTH--HHHHHHHTGG---------GCCCHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhcCC---------CCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888999999999999998654 6777776221 122224567788999999999999999999
Q ss_pred HHhhhhhccHHHHHHHHHHHHHHHHHHH------------------hhccHHHHHHHHHHhhhhhhcccchhhhHHHhcC
Q 035548 100 SIVCRKFGRKPTIQAASVFFLIGAILNC------------------LAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIA 161 (518)
Q Consensus 100 G~l~dr~Grr~~l~~~~~l~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 161 (518)
|+++||+|||+++.++.+++.+++++++ +++|+++++++|+++|++.|+..+...++++|+.
T Consensus 76 G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~ 155 (491)
T 4gc0_A 76 GYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELA 155 (491)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999998 4789999999999999999999999999999999
Q ss_pred CCCcchhHHhHHHHHHHHHHHHHHHHHhhccccC------CCcchHHHHhhhHHHHHHHHHhhcccCChhhHHhcCChhH
Q 035548 162 PPKYRGGLNICFQLLITVGILAANLINYGTSRIH------PYGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQ 235 (518)
Q Consensus 162 ~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~------~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~ 235 (518)
|+++|++..++.+.+..+|.++++.++....... ..+||+.+.+..++.++.++..+++||+|+|+..+++.++
T Consensus 156 p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~ 235 (491)
T 4gc0_A 156 PAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQ 235 (491)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHH
T ss_pred CHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhH
Confidence 9999999999999999999999998876554322 2479999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHHHcCCCC
Q 035548 236 GLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQTMGYGS 315 (518)
Q Consensus 236 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 315 (518)
+.+.+++....+..+++..+.++..+.+++.. ... .....++..+......+..+.+...+..|.+.+.+..+.+.
T Consensus 236 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (491)
T 4gc0_A 236 AEGILRKIMGNTLATQAVQEIKHSLDHGRKTG-GRL---LMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGAST 311 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-THH---HHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCH
T ss_pred HHHhHHHhcCCchhHHHHHHHHHHHHhhhhhh-hHH---HHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCc
Confidence 99999887765544443333322222222111 111 11233455666666777777788888999999999988888
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHh
Q 035548 316 NASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAG 395 (518)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (518)
..........++..+++.++++++.||+|||+.+..+.....++.+.++.... .....+..+....++..+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~~~~~~~~~~~~ 382 (491)
T 4gc0_A 312 DIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY---------TQAPGIVALLSMLFYVAA 382 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH---------TTCCHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHh---------cccchHHHHHHHHHHHHH
Confidence 88888888889999999999999999999999999888888888777665543 334455556666666777
Q ss_pred hhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhcc------c-hhhHHHHHHHHHHHHHHHHhc
Q 035548 396 FAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKM------R-WGIFFFFTGWLLISLIFSATM 468 (518)
Q Consensus 396 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~ 468 (518)
+..++.++.+.+.+|++|++.|+++.|+.+..+++++++++.+++.+.+.. + ...++++++++++..++.+++
T Consensus 383 ~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~ 462 (491)
T 4gc0_A 383 FAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKF 462 (491)
T ss_dssp HHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhe
Confidence 777788888899999999999999999999999999999998887664432 2 346778888888888888999
Q ss_pred ccCCCCCCHHHHHHHHhhcCc
Q 035548 469 LPETKGIPIDEMVDRAWKKHW 489 (518)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~ 489 (518)
+||||+|++||++ +.++++.
T Consensus 463 ~PETkg~tLeei~-~~f~~~~ 482 (491)
T 4gc0_A 463 VPETKGKTLEELE-ALWEPET 482 (491)
T ss_dssp CCCCTTCCHHHHG-GGTC---
T ss_pred ecCCCCCCHHHHH-HHhCCCC
Confidence 9999999999998 7776543
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-38 Score=312.05 Aligned_cols=395 Identities=13% Similarity=0.048 Sum_probs=280.6
Q ss_pred hHHHHHHHHHHHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHHHHHHHHHhh
Q 035548 20 TGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLA 99 (518)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~ 99 (518)
+++++.......++.+..+++...+++.. |.+ .+++ .+..+.|++.+++.++..++++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----------------~~~~-~s~~~~g~~~~~~~~~~~~~~~~~ 82 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALAM--PYL-----------------VEQG-FSRGDLGFALSGISIAYGFSKFIM 82 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHH--HHT-----------------TSST-TCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-----------------HHHh-ccHhHHHHHHHHHHHHHHHHHHhH
Confidence 44556677777777888888776655332 222 4445 788899999999999999999999
Q ss_pred HHhhhhhccHHHHHHHHHHHHHHHHHHHh----hccHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchhHHhHHHH
Q 035548 100 SIVCRKFGRKPTIQAASVFFLIGAILNCL----AQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQL 175 (518)
Q Consensus 100 G~l~dr~Grr~~l~~~~~l~~~~~~~~~~----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 175 (518)
|+++||+|||++++++.++.+++.+++++ +++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.
T Consensus 83 G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 162 (451)
T 1pw4_A 83 GSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNC 162 (451)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHH
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHH
Confidence 99999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCc-chHHHHhhhHHHHHHH-HHhhcccCChhhHHhcCChhHHHHHHHhhhCCccHHHHH
Q 035548 176 LITVGILAANLINYGTSRIHPYG-WRISLGGAAVPALFLL-LGSCIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKEY 253 (518)
Q Consensus 176 ~~~~G~~i~~~i~~~~~~~~~~~-wr~~f~~~~~~~~~~~-~~~~~~~e~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 253 (518)
+..+|.+++|.+++.+.. ..| ||+.|++.+++.++.. +..+++||+|++...+.+.+.. .+.+.+.
T Consensus 163 ~~~~g~~~g~~~~~~l~~--~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~ 230 (451)
T 1pw4_A 163 AHNVGGGIPPLLFLLGMA--WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK----------NDYPDDY 230 (451)
T ss_dssp HHHHHHTSHHHHHHHHHH--HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC----------CC-----
T ss_pred HHHHHHHHHHHHHHHHHH--HhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhc----------ccccccc
Confidence 999999999999876543 246 9999999988877744 4556688877643211111100 0000000
Q ss_pred HHHHHHHHhhcccc-cchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHHH-cCCCChHHHHHHHHHHHHHHH
Q 035548 254 AEICRATEISNLIK-HPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQT-MGYGSNASLLSAVISGTINVA 331 (518)
Q Consensus 254 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~ 331 (518)
+++.+++...+ ...++.++ .+. ++...+..+...........+.|.++++ +|++..+.+.......++.++
T Consensus 231 ---~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 303 (451)
T 1pw4_A 231 ---NEKAEQELTAKQIFMQYVLP---NKL-LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIP 303 (451)
T ss_dssp -----------CCTHHHHHHTSS---CHH-HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHH
T ss_pred ---hhhhhcccccccchHHHHHc---CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 00000000000 00122222 223 3333333333344456677788888876 799999999999999999999
Q ss_pred Hhhhhhhhhhcc--CChHHHHHhHHHHH-HHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeee
Q 035548 332 STLVAIVLVDKA--GRKILLVQAAIQMI-ICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLIS 408 (518)
Q Consensus 332 ~~~~~g~l~d~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (518)
+.++.+++.||+ +||+.+..+..+.. ++.+++... +..+.+.......+.+.+... ..+....+.
T Consensus 304 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~ 371 (451)
T 1pw4_A 304 GTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN-----------PAGNPTVDMICMIVIGFLIYG-PVMLIGLHA 371 (451)
T ss_dssp HHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC-----------CTTCHHHHHHHHHHHHHHHTH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh-----------cccCHHHHHHHHHHHHHHHhc-hHHHHHHHH
Confidence 999999999999 99988776665554 333332210 112333333344344433332 233445778
Q ss_pred cccCChhhhhhHHHHHHHHHHH-HHHHHHHHhHHHHhccchhhHHHH-HHHHHHHHHHH
Q 035548 409 SEIYPLETRNAGYFFAVSTNMV-FTFVIAQAFLSMLCKMRWGIFFFF-TGWLLISLIFS 465 (518)
Q Consensus 409 ~~~~p~~~r~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 465 (518)
.|.+|++.|+++.|+.+....+ +..++|.+.|.+.+..++...+.. +++.++..++.
T Consensus 372 ~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 430 (451)
T 1pw4_A 372 LELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL 430 (451)
T ss_dssp HHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 999999999999999886544444 44444443333
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=297.95 Aligned_cols=374 Identities=10% Similarity=0.036 Sum_probs=274.0
Q ss_pred HHHHHHHHHHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHHHHHHHHHhhHH
Q 035548 22 QVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLASI 101 (518)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~G~ 101 (518)
+.+.....+++..+..+++....++.. |.+.+++ |++..+.|++.+++.+++.++++++|+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-----------------g~s~~~~g~~~~~~~~~~~i~~~~~G~ 83 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILL--PQFQQAF-----------------TLTNFQAGLIQSAFYFGYFIIPIPAGI 83 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHS-----------------CCCSHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHc-----------------CCCHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 334455556666677888877666443 6666666 899999999999999999999999999
Q ss_pred hhhhhccHHHHHHHHHHHHHHHHHH---HhhccHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchhHHhHHHHHHH
Q 035548 102 VCRKFGRKPTIQAASVFFLIGAILN---CLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLIT 178 (518)
Q Consensus 102 l~dr~Grr~~l~~~~~l~~~~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 178 (518)
++||+|||++++++.++.+++.+++ +++++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..
T Consensus 84 l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 163 (438)
T 3o7q_A 84 LMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNS 163 (438)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHH
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHH
Confidence 9999999999999999999999999 8899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCCc------------------------chHHHHhhhHHHHHHHHHhhc--ccCChhhHHhcCC
Q 035548 179 VGILAANLINYGTSRIHPYG------------------------WRISLGGAAVPALFLLLGSCI--IVETPASLIERGK 232 (518)
Q Consensus 179 ~G~~i~~~i~~~~~~~~~~~------------------------wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~ 232 (518)
+|.++++.+++.+....... ||+.|++.+++.++..+..++ .||+++.. ++
T Consensus 164 ~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~ 240 (438)
T 3o7q_A 164 FGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN---HS 240 (438)
T ss_dssp HHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC---CC
T ss_pred HHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc---cc
Confidence 99999999987765222122 999998877776664444333 45544210 00
Q ss_pred hhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHH-HHHc
Q 035548 233 QEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVL-FQTM 311 (518)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 311 (518)
.+ ++++.+.++++.++++..+...+. .+...........+.|.+ +++.
T Consensus 241 ~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 289 (438)
T 3o7q_A 241 DA---------------------------KQGSFSASLSRLARIRHWRWAVLA----QFCYVGAQTACWSYLIRYAVEEI 289 (438)
T ss_dssp CS---------------------------STTSHHHHHHHHTTCSHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cc---------------------------cccchhhhHHHHHhChHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhcc
Confidence 00 000111233445544433332222 222233345566777777 7665
Q ss_pred -CCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHH
Q 035548 312 -GYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVC 390 (518)
Q Consensus 312 -g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (518)
|++..+++.......++.+++.++.+++.||++||+.+..+.++..++.+++... ...+ ......
T Consensus 290 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~-~~~~~~ 355 (438)
T 3o7q_A 290 PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA-------------GGHV-GLIALT 355 (438)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-------------CHHH-HHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc-------------CCcH-HHHHHH
Confidence 9999999999999999999999999999999999999988887776666555441 2222 233333
Q ss_pred HHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccc-hhhHHHHHHHHHHHHHHH
Q 035548 391 VFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMR-WGIFFFFTGWLLISLIFS 465 (518)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 465 (518)
+.+.+.+. ..+..+.+..|.+|++ ++.+.++.. .+.+++.++|.+.|.+.+..+ +...+.+.+++.+...+.
T Consensus 356 ~~g~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 356 LCSAFMSI-QYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp HHHHHHTT-HHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 34444333 3356667778999877 788888776 677999999999999999988 654444444444443333
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-31 Score=266.70 Aligned_cols=392 Identities=13% Similarity=0.037 Sum_probs=251.8
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhhh-hccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcc
Q 035548 71 DNYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRK-FGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFG 149 (518)
Q Consensus 71 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr-~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 149 (518)
++++|++..+.+++.+++.++..++++++|+++|| +|||+++..+.++.+++.+++++++|++.++++|+++|++.+..
T Consensus 46 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 125 (491)
T 4aps_A 46 TGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFL 125 (491)
T ss_dssp HTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc
Confidence 34569999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred cchhhhHHHhcCCCCc--chhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcc-cCCh--
Q 035548 150 NQAVPLFISEIAPPKY--RGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCII-VETP-- 224 (518)
Q Consensus 150 ~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e~p-- 224 (518)
.+...+++.|++|+++ |++++++++.+.++|..++|.+++.+... .|||+.|++.++..++..+..++. ++..
T Consensus 126 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~--~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 203 (491)
T 4aps_A 126 KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA--AGYHVAFSLAAIGMFIGLLVYYFGGKKTLDP 203 (491)
T ss_dssp HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred cchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHhCcccccc
Confidence 9999999999999988 67788889999999999999998776543 589999999877766655444332 2111
Q ss_pred --hhHHhcCChhHHHHHHHh----------------hhCCccHHHHHHH--H-------HHHHHhhcccccchhhhcccC
Q 035548 225 --ASLIERGKQEQGLYTLRK----------------IRGVKDVEKEYAE--I-------CRATEISNLIKHPYRSLMKKS 277 (518)
Q Consensus 225 --~~~~~~~~~~~a~~~~~~----------------~~~~~~~~~~~~~--~-------~~~~~~~~~~~~~~~~~~~~~ 277 (518)
+....+.+.++.++..+. ..+..+.+..... . .......+++..+..+ +.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~- 280 (491)
T 4aps_A 204 HYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTE--HL- 280 (491)
T ss_dssp CCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC--------------
T ss_pred cccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHH--HH-
Confidence 000111122222222221 0011110000000 0 0000000000000001 11
Q ss_pred ChhHHHHHHHHHHHHHhhchhHHHHhHHHHHHH-cCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHH-----H
Q 035548 278 SRPQLICGTFIHMLQQLTGINVVMFYAPVLFQT-MGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLV-----Q 351 (518)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~-----~ 351 (518)
....... ..+........+.....+.+.+.++ .+.+..+.+.......++.+++.++.+++.||++||+... .
T Consensus 281 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~ 359 (491)
T 4aps_A 281 RVVSYIP-LFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAV 359 (491)
T ss_dssp -CTTHHH-HHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHH
Confidence 1111111 1111122222233444555666655 4666566777788888999999999999999999986544 4
Q ss_pred hHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHH
Q 035548 352 AAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVF 431 (518)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~ 431 (518)
+..+.+++.+++....... ......+.+.......+.+.+... ..+..+.++.|.+|++.|+++.|+.+....++
T Consensus 360 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g 434 (491)
T 4aps_A 360 GLMFAGLSFLLMAIPGALY----GTSGKVSPLWLVGSWALVILGEML-ISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVG 434 (491)
T ss_dssp HHHHHHHHHTTTHHHHHHC----CCCTTCCTHHHHHHHHHHHHHHHT-TTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc----CCCCCccHHHHHHHHHHHHHHHHH-HhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 5555555544444322110 000122333444444444444333 34566778899999999999999999999999
Q ss_pred HHHHHHHhHHHHhccchhhHHHHHHHHHHHHHHHHhcccCCC
Q 035548 432 TFVIAQAFLSMLCKMRWGIFFFFTGWLLISLIFSATMLPETK 473 (518)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (518)
..+++.+.+.+.+......+..++.++++..++.+.+.++.+
T Consensus 435 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 435 SALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp HHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998887665556666666666666666666554433
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.98 E-value=7.7e-33 Score=266.42 Aligned_cols=361 Identities=14% Similarity=0.088 Sum_probs=260.9
Q ss_pred HHHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhcc
Q 035548 29 IAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGR 108 (518)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Gr 108 (518)
.++++.++.+++...+.+.. |.+.+++ |.+..+.+++.+++.++..+++++.|+++||+||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~-----------------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~ 64 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAI--ADMARDL-----------------NVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGR 64 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHTTS-----------------SSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHhhhh--HHHHHHc-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34455566666666665443 4554444 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHH
Q 035548 109 KPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLIN 188 (518)
Q Consensus 109 r~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~ 188 (518)
|+++..+.++.+++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.++
T Consensus 65 r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 144 (375)
T 2gfp_A 65 RPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIG 144 (375)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhccccCCCcchHHHHhhhHHHHHHHH-HhhcccCChhhHHhcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccc
Q 035548 189 YGTSRIHPYGWRISLGGAAVPALFLLL-GSCIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIK 267 (518)
Q Consensus 189 ~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (518)
+.+.. ..+||+.|++.++..++..+ ..+++||++++..+ +++.+
T Consensus 145 ~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~ 189 (375)
T 2gfp_A 145 GLLDT--MWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAP---------------------------------RTRLL 189 (375)
T ss_dssp HHSSC--HHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCC---------------------------------CCCTT
T ss_pred HHHHH--hccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcc---------------------------------cccHH
Confidence 77653 35899999998888777655 45567776642100 01112
Q ss_pred cchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHHH-cCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCCh
Q 035548 268 HPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQT-MGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRK 346 (518)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~ 346 (518)
.++++.++++..+. ..+..+...........+.|.++++ .|+++.+.+.......++.+++.++.+++.||.+++
T Consensus 190 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~ 265 (375)
T 2gfp_A 190 TSYKTLFGNSGFNC----YLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL 265 (375)
T ss_dssp TCSTHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH
T ss_pred HHHHHHhcCcchHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23444444332222 2222222233445556666766655 788888999999999999999999999999998873
Q ss_pred HHHHHhHHH-HHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHH
Q 035548 347 ILLVQAAIQ-MIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAV 425 (518)
Q Consensus 347 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~ 425 (518)
. ..+... ...+...+..... ...+.+.......+.+.+.+. ..+....+..|..| +.|+++.|+.+
T Consensus 266 ~--~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~p-~~~g~~~g~~~ 332 (375)
T 2gfp_A 266 M--WQSVICCLLAGLLMWIPDWF---------GVMNVWTLLVPAALFFFGAGM-LFPLATSGAMEPFP-FLAGTAGALVG 332 (375)
T ss_dssp H--HHHHHHHHHTSSSSSHHHHH---------HHHHHHHHHHHHHHHHHHHHH-TSSTTHHHHHTHHH-HHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHHHHHhhh---------ccccHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhCC-cccchHHHHHH
Confidence 2 222222 1222111111100 011223333344444444443 33556677889988 88999999999
Q ss_pred HHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHH
Q 035548 426 STNMVFTFVIAQAFLSMLCKMRWGIFFFFTGWLLI 460 (518)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (518)
....++..+++.+.+.+.+..++...+.+.++.++
T Consensus 333 ~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~ 367 (375)
T 2gfp_A 333 GLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMGLL 367 (375)
T ss_dssp HHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 99999999999999999887666655555444433
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-27 Score=237.96 Aligned_cols=142 Identities=15% Similarity=0.177 Sum_probs=128.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhhHHhhhhh-ccHHHHHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHhhhhhhcccchh
Q 035548 76 YDNQYLQLFTSSLYLAAIVACFLASIVCRKF-GRKPTIQAASVFFLIGAILNCLAQ-NLGMLIAGRLSLGIGVGFGNQAV 153 (518)
Q Consensus 76 ~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~-Grr~~l~~~~~l~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~ 153 (518)
++..+.+++.+++.++..++++++|+++||+ |||+++.++.++.+++.+++++++ +++.++++|++.|++.+...+..
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence 8999999999999999999999999999999 999999999999999999999999 99999999999999999999999
Q ss_pred hhHHHhcCCCCcchhHHhH---HHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhc
Q 035548 154 PLFISEIAPPKYRGGLNIC---FQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCI 219 (518)
Q Consensus 154 ~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 219 (518)
.+++.|++|+++|+++.+. .+.+.++|..++|.+++.+.. ..+||+.|++.++..++..+..++
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~--~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLK--NFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHH--TSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999876666 889999999999999766643 358999999988887765555444
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.4e-28 Score=234.52 Aligned_cols=355 Identities=12% Similarity=0.048 Sum_probs=215.3
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHH---HHHhhccH-HHHHHHHHHhhhhhhcc
Q 035548 74 CKYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAI---LNCLAQNL-GMLIAGRLSLGIGVGFG 149 (518)
Q Consensus 74 ~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~---~~~~~~~~-~~l~~~r~l~G~~~g~~ 149 (518)
+|++..+.|++.+++.++..++++++|+++||+|||++++++..+++++.. .+.+++.. ..+...+++.|++.+..
T Consensus 38 ~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 117 (417)
T 2cfq_A 38 NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFC 117 (417)
T ss_dssp TCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388999999999999999999999999999999999999998887765332 11222221 12345667777666655
Q ss_pred cchhhhHHHhcCCC--CcchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcccCChhhH
Q 035548 150 NQAVPLFISEIAPP--KYRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCIIVETPASL 227 (518)
Q Consensus 150 ~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~ 227 (518)
.+.....+.++.++ ++|+...+....+..+|..++|.+++.+.. .+||+.|++.++..++..+..++.+|+|+..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 194 (417)
T 2cfq_A 118 FNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT---INNQFVFWLGSGCALILAVLLFFAKTDAPSS 194 (417)
T ss_dssp HHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH---HCSHHHHTTTTTTTTTHHHHSCSSCCCCSCS
T ss_pred HhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH---hchhHHHHHHHHHHHHHHHHHHHcCcccccc
Confidence 55555555555443 345666777777778888899988776653 3799999988877665555555555443210
Q ss_pred HhcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHH
Q 035548 228 IERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVL 307 (518)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (518)
.+.++.. +. +.++....++++.++++..+... .. .+.....+.....+.|.+
T Consensus 195 ---~~~~~~~-------~~--------------~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~ 246 (417)
T 2cfq_A 195 ---ATVANAV-------GA--------------NHSAFSLKLALELFRQPKLWFLS---LY-VIGVSCTYDVFDQQFANF 246 (417)
T ss_dssp ---SCSSSSS-------SS--------------CCCCCCHHHHHHHTTCHHHHHHH---HH-HHHHHHHHHHHHHHHHHH
T ss_pred ---ccccccc-------cc--------------ccccccHHHHHHHhcCCchhhHH---HH-HHHHHHHHHHHHHHHHHH
Confidence 0000000 00 00000001122333332222211 11 111112223333445656
Q ss_pred HHHc-C---CCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhH
Q 035548 308 FQTM-G---YGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAK 383 (518)
Q Consensus 308 ~~~~-g---~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (518)
+.+. + .+....+.......++.+++.++.++++||++||+.+..+..+.++..+.+.+ ..+.+
T Consensus 247 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~-------------~~~~~ 313 (417)
T 2cfq_A 247 FTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF-------------ATSAL 313 (417)
T ss_dssp HHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT-------------CCSHH
T ss_pred HHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH-------------hccHH
Confidence 5442 2 22344567777778888999999999999999999888776666555433322 11222
Q ss_pred HHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHH-HHHHHHHHHHHHHHhHHHHhccchhh-HHHHHHHHHHH
Q 035548 384 VVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFA-VSTNMVFTFVIAQAFLSMLCKMRWGI-FFFFTGWLLIS 461 (518)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 461 (518)
..+....+...+... ..+..+.+..|.+|++.|+++.++. +....++++++|.+.|.+.+..++.. +...+++++++
T Consensus 314 ~~~~~~~l~~~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~ 392 (417)
T 2cfq_A 314 EVVILKTLHMFEVPF-LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGF 392 (417)
T ss_dssp HHHHHTTHHHHHHHH-HHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 222222222222221 1123356789999999999999984 78888999999999999998777544 44444444555
Q ss_pred HHHHHhcccCCC
Q 035548 462 LIFSATMLPETK 473 (518)
Q Consensus 462 ~~~~~~~~~~~~ 473 (518)
.++.+...+|++
T Consensus 393 ~~~~~~~~~~~~ 404 (417)
T 2cfq_A 393 TLISVFTLSGPG 404 (417)
T ss_dssp HHHHTTSSCCSC
T ss_pred HHHHHhhhcCCC
Confidence 554455455433
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.9e-12 Score=125.29 Aligned_cols=154 Identities=9% Similarity=-0.029 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHhhchhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHH
Q 035548 283 ICGTFIHMLQQLTGINVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCA 362 (518)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 362 (518)
+....+.++.............|.+.+++|.+..+.++..+...++..++.++.|++.||+|||+.+..+.++.+++.++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~ 107 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAAL 107 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 33333334444444456677788888999999999999999999999999999999999999999999999988888877
Q ss_pred HHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHH
Q 035548 363 IGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSM 442 (518)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 442 (518)
...... ..+.+..++...+.+.+.+.. .+....++.|.+|++.|+.+.++.+....+|..+++.+.+.+
T Consensus 108 ~~~~~~----------~~~~~~l~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 176 (438)
T 3o7q_A 108 FWPAAE----------IMNYTLFLVGLFIIAAGLGCL-ETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_dssp HHHHHH----------TTCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHhccc----------cccHHHHHHHHHHHHhhHHHh-hhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 743221 233444444444444444433 345567889999999999999999999999999999999998
Q ss_pred H-hccc
Q 035548 443 L-CKMR 447 (518)
Q Consensus 443 ~-~~~~ 447 (518)
. +..+
T Consensus 177 ~~~~~~ 182 (438)
T 3o7q_A 177 ILSNVP 182 (438)
T ss_dssp HHTSSC
T ss_pred Hhcccc
Confidence 8 4443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.3e-11 Score=121.21 Aligned_cols=145 Identities=16% Similarity=0.109 Sum_probs=125.7
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHhhHHhhhhh--ccHHHHHHHHHHHH-HHHHHHHhh--ccHHHHHHHHHHhhhhhhc
Q 035548 74 CKYDNQYLQLFTSSLYLAAIVACFLASIVCRKF--GRKPTIQAASVFFL-IGAILNCLA--QNLGMLIAGRLSLGIGVGF 148 (518)
Q Consensus 74 ~~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~--Grr~~l~~~~~l~~-~~~~~~~~~--~~~~~l~~~r~l~G~~~g~ 148 (518)
+|.+..+.+++.+...++..++.++.|++.||+ |||+.+..+..+.. ++.++..+. .+.+.+.+.-++.|++.+.
T Consensus 283 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 362 (451)
T 1pw4_A 283 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYG 362 (451)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhc
Confidence 488999999999999999999999999999999 99999988887776 666666665 3788888889999999999
Q ss_pred ccchhhhHHHhcCCCCcchhHHhHHHHHHHH-HHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcc
Q 035548 149 GNQAVPLFISEIAPPKYRGGLNICFQLLITV-GILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCII 220 (518)
Q Consensus 149 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 220 (518)
..+...+++.|.+|+++|+++.++.+....+ |..++|.+.+.+... .||+..|++.++..++..+..+++
T Consensus 363 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 363 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF--FGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 999999997766543 479999998888877766655544
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.7e-11 Score=118.86 Aligned_cols=146 Identities=12% Similarity=0.103 Sum_probs=121.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhhhH
Q 035548 77 DNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVPLF 156 (518)
Q Consensus 77 s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~ 156 (518)
+....+++.++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.|++.+...+....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566888888888999999999999999999999999998888888788888888888888888898877777778899
Q ss_pred HHhcCCCCcchhHHhH-HHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHh-hcccCCh
Q 035548 157 ISEIAPPKYRGGLNIC-FQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGS-CIIVETP 224 (518)
Q Consensus 157 i~~~~~~~~r~~~~~~-~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p 224 (518)
+.|.+|++.|+++.++ ++....+|..++|.+++.+.. ..|++..|.+.+++.++..+.. ...+|.+
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~--~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE--SIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH--HSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH--hcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999999998 477888999999999876643 2478889988888877765544 4455544
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.6e-11 Score=117.29 Aligned_cols=163 Identities=10% Similarity=0.036 Sum_probs=119.7
Q ss_pred chhHHHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCC
Q 035548 296 GINVVMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTN 375 (518)
Q Consensus 296 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (518)
.........|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+.+..+..+..++.++....
T Consensus 15 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--------- 85 (375)
T 2gfp_A 15 AQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT--------- 85 (375)
T ss_dssp HHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh---------
Confidence 34555566777788899999999999999999999999999999999999999998888888887776653
Q ss_pred CCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHH-
Q 035548 376 TMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMRWGIFFFF- 454 (518)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 454 (518)
.+.+..+....+.+.+.+ ...+....++.|.+|+++|++++++.+....++..++|.+.+.+.+..++...+..
T Consensus 86 ----~~~~~l~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 160 (375)
T 2gfp_A 86 ----SSLTVLIAASAMQGMGTG-VGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFL 160 (375)
T ss_dssp ----HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred ----ccHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHH
Confidence 223333333333333333 23345567789999999999999999999999999999999998877665544443
Q ss_pred HHHHHHHHHHHHhcccCC
Q 035548 455 TGWLLISLIFSATMLPET 472 (518)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~ 472 (518)
+....+..+......||+
T Consensus 161 ~~~~~~~~~~~~~~~~~~ 178 (375)
T 2gfp_A 161 LVLCAGVTFSMARWMPET 178 (375)
T ss_dssp HHHHHHHHCCCCCSSCCC
T ss_pred HHHHHHHHHHHHHHCccc
Confidence 333333333244445544
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-10 Score=115.88 Aligned_cols=150 Identities=9% Similarity=0.088 Sum_probs=111.9
Q ss_pred chhHHHHhHHHHH-HH-----cCCCChHHHHHHHHHHHHHHHHhhhhhhhhhc-cCChHHHHHhHHHHHHHHHHHHHHHH
Q 035548 296 GINVVMFYAPVLF-QT-----MGYGSNASLLSAVISGTINVASTLVAIVLVDK-AGRKILLVQAAIQMIICQCAIGVILK 368 (518)
Q Consensus 296 ~~~~~~~~~~~~~-~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (518)
.++....+.+.++ ++ +|.+..+.++..+...++..++.++.|+++|| +|||+.+..+.++..++.+++.+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~--- 104 (491)
T 4aps_A 28 SYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL--- 104 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH---
Confidence 3444545555555 44 89999999999999999999999999999999 89999999988888877776654
Q ss_pred HhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhh--hhhHHHHHHHHHHHHHHHHHHHhHHHHhcc
Q 035548 369 MFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLET--RNAGYFFAVSTNMVFTFVIAQAFLSMLCKM 446 (518)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 446 (518)
..+.+..++...+.+.+.+.. .+....++.|.+|++. |+.+.++.+....+|..++|.+.+.+.+..
T Consensus 105 ----------~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 173 (491)
T 4aps_A 105 ----------PFGASALFGSIILIIIGTGFL-KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA 173 (491)
T ss_dssp ----------CCSTTHHHHHHHHHHHHHHHH-HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ----------hhhHHHHHHHHHHHHHHHHhc-cchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 123333344444444443332 3455677899999988 778888889999999999999999999988
Q ss_pred chhhHHHHHHHHH
Q 035548 447 RWGIFFFFTGWLL 459 (518)
Q Consensus 447 ~~~~~~~~~~~~~ 459 (518)
++...+...++..
T Consensus 174 g~~~~f~~~~~~~ 186 (491)
T 4aps_A 174 GYHVAFSLAAIGM 186 (491)
T ss_dssp CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 8665444444333
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.1e-10 Score=113.70 Aligned_cols=156 Identities=7% Similarity=-0.041 Sum_probs=112.8
Q ss_pred hhHHHHhHHHHH-HHcC------CCChHHHHHHHHHHHHHHHHhhhhhhhhhcc-CChHHHHHhHHHHHHHHHHHHHHHH
Q 035548 297 INVVMFYAPVLF-QTMG------YGSNASLLSAVISGTINVASTLVAIVLVDKA-GRKILLVQAAIQMIICQCAIGVILK 368 (518)
Q Consensus 297 ~~~~~~~~~~~~-~~~g------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (518)
++....+.+.++ +++| ++..+.++..+...++..++.++.|+++||+ |||+.+..+.++..++.+++.+.
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-- 105 (524)
T 2xut_A 28 FYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF-- 105 (524)
T ss_dssp HHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh--
Confidence 344455555555 5678 9999999999999999999999999999999 99999998888887777766552
Q ss_pred HhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHH---HHHHHHHHHHHHHHHhHHHHhc
Q 035548 369 MFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFF---AVSTNMVFTFVIAQAFLSMLCK 445 (518)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~---~~~~~~~~~~~~~~~~~~~~~~ 445 (518)
..+.+..++...+.+.+.+. ..+....++.|.+|++.|+++.+. .+....+|..++|.+.+.+.+.
T Consensus 106 ----------~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 174 (524)
T 2xut_A 106 ----------EHSVQGFYTGLFLIALGSGG-IKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN 174 (524)
T ss_dssp ----------SSCHHHHHHHHHHHHHHHHT-THHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT
T ss_pred ----------cccHHHHHHHHHHHHHhccc-cchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 21333444444444444333 335566788999999999766555 8888999999999999999988
Q ss_pred cchhhHHHHHHHHHHHHHHH
Q 035548 446 MRWGIFFFFTGWLLISLIFS 465 (518)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~ 465 (518)
.++...+...++..+...+.
T Consensus 175 ~g~~~~f~~~~~~~~~~~~~ 194 (524)
T 2xut_A 175 FGAAVAFGIPGVLMFVATVF 194 (524)
T ss_dssp SCHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHH
Confidence 77665444444433333333
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.2e-09 Score=108.36 Aligned_cols=149 Identities=15% Similarity=-0.004 Sum_probs=105.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhh----ccHHHHHHHH--HHhhhhhhc
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLA----QNLGMLIAGR--LSLGIGVGF 148 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~----~~~~~l~~~r--~l~G~~~g~ 148 (518)
+.+............+...++.++.+++.||+|||+.++.+.....++.+..+.. .+.+..++.- +..+++ ..
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 386 (491)
T 4gc0_A 308 GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFA-MS 386 (491)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-TT
T ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH-hH
Confidence 5566666777777888899999999999999999999999988888777665442 1122222222 222222 23
Q ss_pred ccchhhhHHHhcCCCCcchhHHhHHHHHHHHHHHHHHHHHhhcccc----CCCcchHHHHhhhHHHHHHHH-HhhcccCC
Q 035548 149 GNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRI----HPYGWRISLGGAAVPALFLLL-GSCIIVET 223 (518)
Q Consensus 149 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~----~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~ 223 (518)
..+....+.+|.+|.+.|+++.++......+|..+++.+...+... ...++...|++.++++++..+ .++++||+
T Consensus 387 ~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 387 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 4467778999999999999999999999999888887664333211 113456678787887777554 55678997
Q ss_pred h
Q 035548 224 P 224 (518)
Q Consensus 224 p 224 (518)
.
T Consensus 467 k 467 (491)
T 4gc0_A 467 K 467 (491)
T ss_dssp T
T ss_pred C
Confidence 5
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 518 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 2e-14 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 0.002 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 73.2 bits (178), Expect = 2e-14
Identities = 52/399 (13%), Positives = 107/399 (26%), Gaps = 30/399 (7%)
Query: 81 LQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCL----AQNLGMLI 136
L S + +A + F+ V + + + A + + ++ ++
Sbjct: 61 LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMF 120
Query: 137 AGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHP 196
G G G + K RGG+ + VG L+
Sbjct: 121 VLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN 180
Query: 197 YGWRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAEI 256
A L L ++ +TP S +E + E +I
Sbjct: 181 DWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQI 240
Query: 257 CRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQTMGYGSN 316
+ N L ++ L ++ + L + + +
Sbjct: 241 FMQYVLPN---------------KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALD 285
Query: 317 ASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNT 376
S + + + TL+ + DK R M + A V
Sbjct: 286 KSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW--------- 336
Query: 377 MPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIA 436
M V ++ + + + + L + E+ P + F + V A
Sbjct: 337 MNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAA 396
Query: 437 QAFLSMLCKMR--WGIFFFFTGWLLISLIFSATMLPETK 473
A + G F G ++++I ++ K
Sbjct: 397 SAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 435
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 37.8 bits (86), Expect = 0.002
Identities = 32/401 (7%), Positives = 90/401 (22%), Gaps = 45/401 (11%)
Query: 83 LFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCL----AQNLGMLIAG 138
+ +++ L +++ L ++ K G + + L+ + ++ G
Sbjct: 47 IIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVG 106
Query: 139 RLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQLLITVGILAANLINYGTSRIHPYG 198
+ GI +GF A + R + + + A +
Sbjct: 107 SIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINN 166
Query: 199 WRISLGGAAVPALFLLLGSCIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKEYAEICR 258
+ G+ + +L + P+S
Sbjct: 167 QFVFWLGSGCALILAVLLFFAKTDAPSSATVA--------------------------NA 200
Query: 259 ATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQTMGYGSNAS 318
+ + + + + I + + F G
Sbjct: 201 VGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRV 260
Query: 319 LLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMP 378
G + A + I I + A+ + + +
Sbjct: 261 FGYVTTMGELLNA-------------SIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSS 307
Query: 379 TVPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQA 438
+ + V+++ C+ + + + Y +
Sbjct: 308 FATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSV 367
Query: 439 FLSMLCKM--RWGIFFFFTGWLLISLIFSATMLPETKGIPI 477
+ + G + L + S L + +
Sbjct: 368 LAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL 408
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 518 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.95 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.38 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.33 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6e-38 Score=307.27 Aligned_cols=404 Identities=14% Similarity=0.065 Sum_probs=270.5
Q ss_pred chHHHHHHHHHHHHhhhhhhcccccccccccchhHHHhhhhhhhhhhcccccccccCCChhHHHHHHHHHHHHHHHHHHh
Q 035548 19 LTGQVLVCSIIAAFGGLMFGYDIGISAGVTTMDDFLIKFFPLVYEKKHRAKEDNYCKYDNQYLQLFTSSLYLAAIVACFL 98 (518)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~ 98 (518)
.++.+|.....+.++.+....+...++.+. | +.+ |+|+|.+++|++.+++.+++.+++++
T Consensus 19 ~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~--p-~~~-----------------~~g~s~~~~g~~~s~~~~~~~~~~~~ 78 (447)
T d1pw4a_ 19 YRRLRWQIFLGIFFGYAAYYLVRKNFALAM--P-YLV-----------------EQGFSRGDLGFALSGISIAYGFSKFI 78 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSHHHHH--H-HTT-----------------SSTTCSSCHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HHH-----------------HhCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777777777777777776655332 2 222 23899999999999999999999999
Q ss_pred hHHhhhhhccHHHHHHHHHHHHHHHHHHHhh----ccHHHHHHHHHHhhhhhhcccchhhhHHHhcCCCCcchhHHhHHH
Q 035548 99 ASIVCRKFGRKPTIQAASVFFLIGAILNCLA----QNLGMLIAGRLSLGIGVGFGNQAVPLFISEIAPPKYRGGLNICFQ 174 (518)
Q Consensus 99 ~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~ 174 (518)
+|+++||+|||+++..+.++.+++.++++++ ++++.+++.|++.|++.|...+...+++.|++|+++|++++++.+
T Consensus 79 ~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~ 158 (447)
T d1pw4a_ 79 MGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWN 158 (447)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHH
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccc
Confidence 9999999999999999999999999988876 478899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHh-hcccCChhhHHhcCChhHHHHHHHhhhCCccHHHHH
Q 035548 175 LLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGS-CIIVETPASLIERGKQEQGLYTLRKIRGVKDVEKEY 253 (518)
Q Consensus 175 ~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 253 (518)
.+..+|..+++.++....... .+||+.|++.+++.++..+.. .+.++.|+........+.. ++..++.
T Consensus 159 ~~~~~g~~i~~~~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~ 227 (447)
T d1pw4a_ 159 CAHNVGGGIPPLLFLLGMAWF-NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK----------NDYPDDY 227 (447)
T ss_dssp HHHHHHHTSHHHHHHHHHHHT-CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC----------CC-----
T ss_pred cccchhhhhhhhhhhhHhhhh-hcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhh----------hhcccch
Confidence 999999999998876544332 479999998888877755444 4455555432111111100 0000000
Q ss_pred HHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHHHH-HcCCCChHHHHHHHHHHHHHHHH
Q 035548 254 AEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVLFQ-TMGYGSNASLLSAVISGTINVAS 332 (518)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~ 332 (518)
. ++..++...++...+..+ +.+.++......+...........+.+.+++ ..+++..+.+.......+..+++
T Consensus 228 ~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (447)
T d1pw4a_ 228 N--EKAEQELTAKQIFMQYVL----PNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPG 301 (447)
T ss_dssp ----------CCTHHHHHHTS----SCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHH
T ss_pred h--hccccccchhhHHHHHHH----cCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhh
Confidence 0 000000010111112222 2222333333333333344556667777765 45899999999999999999999
Q ss_pred hhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhHHHHHHHHHHHHhhhccccccceeeecccC
Q 035548 333 TLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAKVVVILVCVFVAGFAWSWGPICWLISSEIY 412 (518)
Q Consensus 333 ~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (518)
.++.+++.||++|++..........+.......... ....+.+......++.+.+. ....+....+..|.+
T Consensus 302 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~ 372 (447)
T d1pw4a_ 302 TLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM--------NPAGNPTVDMICMIVIGFLI-YGPVMLIGLHALELA 372 (447)
T ss_dssp HHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTS--------CCTTCHHHHHHHHHHHHHHH-THHHHHHHHHHHHTS
T ss_pred hhhhhhhhhhccccccccccchhHHHHHHHHHHHHh--------cccccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHc
Confidence 999999999999876554444333333322222111 01223333333333333332 223345567789999
Q ss_pred ChhhhhhHHHHHHHHHHHH-HHHHHHHhHHHHhccchhh-HHHHHHHHHHHHHHHHhc
Q 035548 413 PLETRNAGYFFAVSTNMVF-TFVIAQAFLSMLCKMRWGI-FFFFTGWLLISLIFSATM 468 (518)
Q Consensus 413 p~~~r~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 468 (518)
|++.|+++.|+.+..++++ ..++|.+.|.+.|..|+.. ++...++++++.++...+
T Consensus 373 p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 430 (447)
T d1pw4a_ 373 PKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 430 (447)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988875 5667889999999998654 444444445544444443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=9.8e-28 Score=231.11 Aligned_cols=359 Identities=12% Similarity=0.026 Sum_probs=230.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHH----HHHHHHHhhhhhhccc
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGM----LIAGRLSLGIGVGFGN 150 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~----l~~~r~l~G~~~g~~~ 150 (518)
|+|..++|++.+++.++..++++++|+++||+|||++++++..+..++..+..+..+... .++.+.+.+.+.+...
T Consensus 39 g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (417)
T d1pv7a_ 39 HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCF 118 (417)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccc
Confidence 899999999999999999999999999999999999999999999999988888766554 3455666666666555
Q ss_pred chhhhHHHhcCCCC--cchhHHhHHHHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHH-HHHHhhcccCChhhH
Q 035548 151 QAVPLFISEIAPPK--YRGGLNICFQLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALF-LLLGSCIIVETPASL 227 (518)
Q Consensus 151 ~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~-~~~~~~~~~e~p~~~ 227 (518)
........+..+++ ++.+..+........|..+++.+++.+... +|+..+........+ ..+..+..+++|+..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (417)
T d1pv7a_ 119 NAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI---NNQFVFWLGSGCALILAVLLFFAKTDAPSSA 195 (417)
T ss_dssp TTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSS
T ss_pred cchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc---cccccccchhhHHHHHHHHHHHHhcccccch
Confidence 55555554444332 345566777778888888888887766543 566666555554444 555556666665321
Q ss_pred HhcCChhHHHHHHHhhhCCccHHHHHHHHHHHHHhhcccccchhhhcccCChhHHHHHHHHHHHHHhhchhHHHHhHHHH
Q 035548 228 IERGKQEQGLYTLRKIRGVKDVEKEYAEICRATEISNLIKHPYRSLMKKSSRPQLICGTFIHMLQQLTGINVVMFYAPVL 307 (518)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (518)
..+ ++ ++.+.++.......+..+.+..+............. .......+.+
T Consensus 196 ~~~---~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 246 (417)
T d1pv7a_ 196 TVA---NA----------------------VGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTY----DVFDQQFANF 246 (417)
T ss_dssp CSS---HH----------------------HHSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred hhh---hh----------------------hhhhcccccccccccccccccccchhhhhHHHHHHH----Hhhhcccccc
Confidence 000 00 000000000111112222222222222222222211 1122222222
Q ss_pred HHH----cCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCCchhH
Q 035548 308 FQT----MGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPTVPAK 383 (518)
Q Consensus 308 ~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (518)
... .+.+....+.......++..++..+.+++.||.++|+.+..+..+..++.+.+.. ..+.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~ 313 (417)
T d1pv7a_ 247 FTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF-------------ATSAL 313 (417)
T ss_dssp HTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT-------------CCCHH
T ss_pred ccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhcccc-------------ccccc
Confidence 222 2233455667777888889999999999999999999998888877777666544 23344
Q ss_pred HHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHH-HHHHHHHHHHHHHhHHHHhccchh-hHHHHHHHHHHH
Q 035548 384 VVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAV-STNMVFTFVIAQAFLSMLCKMRWG-IFFFFTGWLLIS 461 (518)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 461 (518)
..+....+.+.+.+... +....+..|.+|++.|+++.|+.. ....++..++|.+.|.+.|..|+. .+++.+++.++.
T Consensus 314 ~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~ 392 (417)
T d1pv7a_ 314 EVVILKTLHMFEVPFLL-VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGF 392 (417)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHH-HHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 44444444444444333 455677899999999999999864 556789999999999999999865 555666666666
Q ss_pred HHHHHhcccCCCCCCHHH
Q 035548 462 LIFSATMLPETKGIPIDE 479 (518)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~ 479 (518)
.++..+.++++++.+.++
T Consensus 393 ~~~~~~~l~~~~~~~~~r 410 (417)
T d1pv7a_ 393 TLISVFTLSGPGPLSLLR 410 (417)
T ss_dssp HHHHHHHSCCSSCTTHHH
T ss_pred HHHHHHhhcCCCccchhH
Confidence 666666676666555433
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.38 E-value=6e-13 Score=128.14 Aligned_cols=163 Identities=12% Similarity=0.097 Sum_probs=117.8
Q ss_pred HHHhHHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccCChHHHHHhHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 035548 300 VMFYAPVLFQTMGYGSNASLLSAVISGTINVASTLVAIVLVDKAGRKILLVQAAIQMIICQCAIGVILKMFLLTTNTMPT 379 (518)
Q Consensus 300 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (518)
+....|. +++.|++..+.++..+...++..++.++.|+++||+|||+.+..+.++..++.++.+..... .
T Consensus 44 ~~~~~p~-~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~---------~ 113 (447)
T d1pw4a_ 44 FALAMPY-LVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA---------T 113 (447)
T ss_dssp HHHHHHH-TTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHH---------H
T ss_pred HHHHHHH-HHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchh---------h
Confidence 3444454 45689999999999999999999999999999999999999999998888888777653221 1
Q ss_pred chhHHHHHHHHHHHHhhhccccccceeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhccc-h-hhHHHHHHH
Q 035548 380 VPAKVVVILVCVFVAGFAWSWGPICWLISSEIYPLETRNAGYFFAVSTNMVFTFVIAQAFLSMLCKMR-W-GIFFFFTGW 457 (518)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~ 457 (518)
...+..++...+.+.+.+.. .+....++.|.+|+++|++++++.+....+|..+++.+.+...+..+ + ..+++.+.+
T Consensus 114 ~~~~~~~~~~~~~g~~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~ 192 (447)
T d1pw4a_ 114 SSIAVMFVLLFLCGWFQGMG-WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFC 192 (447)
T ss_dssp SSSSHHHHHHHHHHHHHHHT-HHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhh
Confidence 22233333333344333333 24455678999999999999999999999999999998888777653 3 345555555
Q ss_pred HHHHHHHHHhcccCCC
Q 035548 458 LLISLIFSATMLPETK 473 (518)
Q Consensus 458 ~~~~~~~~~~~~~~~~ 473 (518)
..+..++.+.+.++.+
T Consensus 193 ~~~~~~~~~~~~~~~~ 208 (447)
T d1pw4a_ 193 AILVALFAFAMMRDTP 208 (447)
T ss_dssp HHHHHHHHHHHCCCSS
T ss_pred HHHHHHHHHHhcccch
Confidence 5555555555555543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.33 E-value=3.7e-12 Score=120.71 Aligned_cols=144 Identities=12% Similarity=0.086 Sum_probs=126.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhhhhccHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhhhhcccchhh
Q 035548 75 KYDNQYLQLFTSSLYLAAIVACFLASIVCRKFGRKPTIQAASVFFLIGAILNCLAQNLGMLIAGRLSLGIGVGFGNQAVP 154 (518)
Q Consensus 75 ~~s~~~~~~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (518)
+.+....+...+...++..++..+.+++.||+|+|+.+..+.++.+++.++..+.++.+.+++..++.|++.+...+...
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 334 (417)
T d1pv7a_ 255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCF 334 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 45667778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhcCCCCcchhHHhHH-HHHHHHHHHHHHHHHhhccccCCCcchHHHHhhhHHHHHHHHHhhcc
Q 035548 155 LFISEIAPPKYRGGLNICF-QLLITVGILAANLINYGTSRIHPYGWRISLGGAAVPALFLLLGSCII 220 (518)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~-~~~~~~G~~i~~~i~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 220 (518)
+++.|.+|+++|+++.++. +....+|..++|.+++.+.+. .||+..|++.+++.++..++..++
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~ 399 (417)
T d1pv7a_ 335 KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES--IGFQGAYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp HHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999975 556789999999997766543 589999998888877755544443
|