Citrus Sinensis ID: 035568

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------52
MQIYHGGQSQEIEELKEEVRRELLGSGVDSLSRLKLIDAILRLGVGYQFERELEEALQNLYDAFSNNFYNIEDNDLYHVALRFRILRQRGYKVSCDIFNKFKDGKGNFKESLKTDVSGMLSLYEAAHLVVHGEDILNEAIAFTTAHLQSSMAPQVIHALRQPLYKGLPRIEARFFISLYQEHEPLHNKALLKLAKLDFNQVQSLYKIELSEISRWWKDLDFARKLPFARDRVVECYFWIVGVYFEPQYSLARKLLTKVISMTSIIDDIYDVYGIPEELDLFTAAIDRWDVSCIDQLPEYMQTFYVALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAASFLGMDSVVTKEAFDWVSGKPKIIRASTIIGRLMDDIKSHKFEQERGHAASAIECYMKEKEREGVSVTEQEVHEELYKKVGDAWKDINEECLMPTEVPRPLLMRVLNLSRVIDVIYKEGDGYTHVGQVMKDNIASVLIHPVAI
cccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccccHHHHcccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcHHcccccccHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcHHcccccccccccHHHHHHHHHHHcccccc
cccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHcHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHEcccccEcHHHcccHHHHHHHHHHHcccccccHHHccHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHHcHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcHHHcHHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHEEccccc
mqiyhggqsqEIEELKEEVRRELLGSGVDSLSRLKLIDAILRLGVGYQFERELEEALQNLYDAfsnnfyniedndlYHVALRFRILRQRGYKVSCDIfnkfkdgkgnfkeSLKTDVSGMLSLYEAAHLVVHGEDILNEAIAFTTAHLQSSMAPQVIHALRQplykglprIEARFFISLYQEHEPLHNKALLKLAKLDFNQVQSLYKIELSEISRWWKDLDFarklpfardRVVECYFWIVGVYFEPQYSLARKLLTKVISMTSIIddiydvygipeelDLFTAAIDRWDVSCIDQLPEYMQTFYVALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHgyhdeskwfhnnyvptMEEYMRVSLVTSGYSMLTAASFLGMDSVVTKEAfdwvsgkpkiiRASTIIGRLMDDIKSHKFEQERGHAASAIECYMKekeregvsvtEQEVHEELYKKVGDAWKDineeclmptevprpLLMRVLNLSRVIDVIYkegdgythvgQVMKDNIAsvlihpvai
mqiyhggqsqeIEELKEEVRRELLgsgvdslsrlKLIDAILRLGVGYQFERELEEALQNLYDAFSNNFYNIEDNDLYHVALRFRILRQRGYKVSCDIfnkfkdgkgnfkESLKTDVSGMLSLYEAAHLVVHGEDILNEAIAFTTAHLQSSMAPQVIHALRQPLYKGLPRIEARFFISLYQEHEPLHNKALLKLAKLDFNQVQSLYKIELSEISRWWKDLDFARKLPFARDRVVECYFWIVGVYFEPQYSLARKLLTKVISMTSIIDDIYDVYGIPEELDLFTAAIDRWDVSCIDQLPEYMQTFYVALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAASFLGMDSVVTKEafdwvsgkpkiiRASTIIGRLMDDIKSHKFEQERGHAASAIECYMKEKEREGVSVTEQEVHEELYKKVGDAWKDINEECLMPTEVPRPLLMRVLNLSRVIDVIYKEGDGYTHVGQVMKDNIASVLIHPVAI
MQIYHGGQSQeieelkeevrrellGSGVDSLSRLKLIDAILRLGVGYQFERELEEALQNLYDAFSNNFYNIEDNDLYHVALRFRILRQRGYKVSCDIfnkfkdgkgnfkESLKTDVSGMLSLYEAAHLVVHGEDILNEAIAFTTAHLQSSMAPQVIHALRQPLYKGLPRIEARFFISLYQEHEPLHNkallklaklDFNQVQSLYKIELSEISRWWKDLDFARKLPFARDRVVECYFWIVGVYFEPQYSLARKLLTKVISMTSIIDDIYDVYGIPEELDLFTAAIDRWDVSCIDQLPEYMQTFYVALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAASFLGMDSVVTKEAFDWVSGKPKIIRASTIIGRLMDDIKSHKFEQERGHAASAIECYMKEKEREGVSVTEQEVHEELYKKVGDAWKDINEECLMPTEVPRPLLMRVLNLSRVIDVIYKEGDGYTHVGQVMKDNIASVLIHPVAI
***********************LGSGVDSLSRLKLIDAILRLGVGYQFERELEEALQNLYDAFSNNFYNIEDNDLYHVALRFRILRQRGYKVSCDIFNKFKDGKGNFKESLKTDVSGMLSLYEAAHLVVHGEDILNEAIAFTTAHLQSSMAPQVIHALRQPLYKGLPRIEARFFISLYQEHEPLHNKALLKLAKLDFNQVQSLYKIELSEISRWWKDLDFARKLPFARDRVVECYFWIVGVYFEPQYSLARKLLTKVISMTSIIDDIYDVYGIPEELDLFTAAIDRWDVSCIDQLPEYMQTFYVALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAASFLGMDSVVTKEAFDWVSGKPKIIRASTIIGRLMDDIKSHKF********SAIECYM*************EVHEELYKKVGDAWKDINEECLMPTEVPRPLLMRVLNLSRVIDVIYKEGDGYTHVGQVMKDNIASVLIHP***
***Y*GGQSQEIEELKEEVRRELLGSGVDSLSRLKLIDAILRLGVGYQFERELEEALQNLYDAFSNNFYNIEDNDLYHVALRFRILRQRGYKVSCDIFNKFKDGKGNFKESLKTDVSGMLSLYEAAHLVVHGEDILNEAIAFTTAHLQSSMAPQVIHALRQPLYKGLPRIEARFFISLYQEHEPLHNKALLKLAKLDFNQVQSLYKIELSEISRWWKDLDFARKLPFARDRVVECYFWIVGVYFEPQYSLARKLLTKVISMTSIIDDIYDVYGIPEELDLFTAAIDRWDVSCIDQLPEYMQTFYVALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAASFLGMDSVVTKEAFDWVSGKPKIIRASTIIGRLMDDIK**********AASAIECYM*************EVHEELYKKVGDAWKDINEECLMPTEVPRPLLMRVLNLSRVIDVIYKEGDGYTHVGQVMKDNIASVLIHPVAI
***********IEELKEEVRRELLGSGVDSLSRLKLIDAILRLGVGYQFERELEEALQNLYDAFSNNFYNIEDNDLYHVALRFRILRQRGYKVSCDIFNKFKDGKGNFKESLKTDVSGMLSLYEAAHLVVHGEDILNEAIAFTTAHLQSSMAPQVIHALRQPLYKGLPRIEARFFISLYQEHEPLHNKALLKLAKLDFNQVQSLYKIELSEISRWWKDLDFARKLPFARDRVVECYFWIVGVYFEPQYSLARKLLTKVISMTSIIDDIYDVYGIPEELDLFTAAIDRWDVSCIDQLPEYMQTFYVALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAASFLGMDSVVTKEAFDWVSGKPKIIRASTIIGRLMDDIKSHKFEQERGHAASAIECYMKE************VHEELYKKVGDAWKDINEECLMPTEVPRPLLMRVLNLSRVIDVIYKEGDGYTHVGQVMKDNIASVLIHPVAI
***YHGGQSQEIEELKEEVRRELLGSGVDSLSRLKLIDAILRLGVGYQFERELEEALQNLYDAFSNNFYNIEDNDLYHVALRFRILRQRGYKVSCDIFNKFKDGKGNFKESLKTDVSGMLSLYEAAHLVVHGEDILNEAIAFTTAHLQSSMAPQVIHALRQPLYKGLPRIEARFFISLYQEHEPLHNKALLKLAKLDFNQVQSLYKIELSEISRWWKDLDFARKLPFARDRVVECYFWIVGVYFEPQYSLARKLLTKVISMTSIIDDIYDVYGIPEELDLFTAAIDRWDVSCIDQLPEYMQTFYVALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAASFLGMDSVVTKEAFDWVSGKPKIIRASTIIGRLMDDIKSHKFEQERGHAASAIECYMKEKEREGVSVTEQEVHEELYKKVGDAWKDINEECLMPTEVPRPLLMRVLNLSRVIDVIYKEGDGYTHVGQVMKDNIASVLIHPVAI
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MQIYHGGQSQEIEELKEEVRRELLGSGVDSLSRLKLIDAILRLGVGYQFERELEEALQNLYDAFSNNFYNIEDNDLYHVALRFRILRQRGYKVSCDIFNKFKDGKGNFKESLKTDVSGMLSLYEAAHLVVHGEDILNEAIAFTTAHLQSSMAPQVIHALRQPLYKGLPRIEARFFISLYQEHEPLHNKALLKLAKLDFNQVQSLYKIELSEISRWWKDLDFARKLPFARDRVVECYFWIVGVYFEPQYSLARKLLTKVISMTSIIDDIYDVYGIPEELDLFTAAIDRWDVSCIDQLPEYMQTFYVALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAASFLGMDSVVTKEAFDWVSGKPKIIRASTIIGRLMDDIKSHKFEQERGHAASAIECYMKEKEREGVSVTEQEVHEELYKKVGDAWKDINEECLMPTEVPRPLLMRVLNLSRVIDVIYKEGDGYTHVGQVMKDNIASVLIHPVAI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query518 2.2.26 [Sep-21-2011]
Q6Q3H3557 (-)-germacrene D synthase yes no 0.963 0.895 0.627 0.0
F6M8H7562 Probable sesquiterpene sy N/A no 0.972 0.896 0.592 0.0
F6M8H4559 Probable sesquiterpene sy N/A no 0.974 0.903 0.591 1e-180
Q6Q3H2556 Valencene synthase OS=Vit no no 0.978 0.911 0.594 1e-178
F6M8H5562 Probable sesquiterpene sy N/A no 0.980 0.903 0.584 1e-178
B5A435559 Sesquiterpene synthase OS N/A no 0.978 0.906 0.585 1e-178
E3W207559 Sesquiterpene synthase OS N/A no 0.972 0.901 0.575 1e-173
E3W208562 Sesquiterpene synthase OS N/A no 0.974 0.898 0.570 1e-173
F6M8H6562 Probable sesquiterpene sy N/A no 0.980 0.903 0.563 1e-172
Q43714555 (+)-delta-cadinene syntha N/A no 0.959 0.895 0.565 1e-167
>sp|Q6Q3H3|TPSGD_VITVI (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1 Back     alignment and function desciption
 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/516 (62%), Positives = 399/516 (77%), Gaps = 17/516 (3%)

Query: 10  QEIEELKEEVRRELLGSGVDSLSRLKLIDAILRLGVGYQFERELEEALQNLYDAFSNNFY 69
           Q +++LKEEVR+ L+ +  DS  +L LIDAI RLGV Y FE E++E L++++D    +  
Sbjct: 52  QHVQQLKEEVRKMLMAADDDSAQKLLLIDAIQRLGVAYHFESEIDEVLKHMFDGSVVS-- 109

Query: 70  NIEDNDLYHVALRFRILRQRGYKVSCDIFNKFKDGKGNFKESLKTDVSGMLSLYEAAHLV 129
              + D+Y  +LRFR+LRQ+GY VSCD+FN FKD +GNFKESL +DV GMLSLYEA H  
Sbjct: 110 --AEEDVYTASLRFRLLRQQGYHVSCDLFNNFKDNEGNFKESLSSDVRGMLSLYEATHFR 167

Query: 130 VHGEDILNEAIAFTTAHLQSS-------MAPQVIHALRQPLYKGLPRIEARFFISLYQEH 182
           VHGEDIL+EA+AFTT HLQS+       +A QV+HAL+QP+ KGLPR+EAR + S+YQ  
Sbjct: 168 VHGEDILDEALAFTTTHLQSATKHSSNPLAEQVVHALKQPIRKGLPRLEARHYFSVYQAD 227

Query: 183 EPLHNKALLKLAKLDFNQVQSLYKIELSEISRWWKDLDFARKLPFARDRVVECYFWIVGV 242
           +  HNKALLKLAKLDFN +Q L++ ELS+IS WWKDLDFA KLPFARDRVVECYFWI+GV
Sbjct: 228 DS-HNKALLKLAKLDFNLLQKLHQKELSDISAWWKDLDFAHKLPFARDRVVECYFWILGV 286

Query: 243 YFEPQYSLARKLLTKVISMTSIIDDIYDVYGIPEELDLFTAAIDRWDVSCIDQLPEYMQT 302
           YFEPQ+  AR++LTKVI+MTSIIDDIYDVYG  EEL+LFT A++RWD+S IDQLPEYM+ 
Sbjct: 287 YFEPQFFFARRILTKVIAMTSIIDDIYDVYGTLEELELFTEAVERWDISAIDQLPEYMRV 346

Query: 303 FYVALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRV 362
            Y ALL +Y EIEEE+A +G SYR++YAKE MK  V  Y++E+KW     +PTMEEYM V
Sbjct: 347 CYQALLYVYSEIEEEMAKEGRSYRLYYAKEAMKNQVRAYYEEAKWLQVQQIPTMEEYMPV 406

Query: 363 SLVTSGYSMLTAASFLGMDSVVTKEAFDWVSGKPKIIRASTIIGRLMDDIKSHKFEQERG 422
           +LVTS YSML   SF+GM   VTKE+FDW+  KPKI+RAS I+ RLMDD+  HKFEQ+RG
Sbjct: 407 ALVTSAYSMLATTSFVGMGDAVTKESFDWIFSKPKIVRASAIVCRLMDDMVFHKFEQKRG 466

Query: 423 HAASAIECYMKEKEREGVSVTEQEVHEELYKKVGDAWKDINEECLMPTEVPRPLLMRVLN 482
           H ASA+ECYMK+        +EQE   E  + V +AWKDINEECL+PT VP P+LMRVLN
Sbjct: 467 HVASAVECYMKQH-----GASEQETPNEFPQPVREAWKDINEECLIPTAVPMPILMRVLN 521

Query: 483 LSRVIDVIYKEGDGYTHVGQVMKDNIASVLIHPVAI 518
           L+RVIDVIYK  DGYTH G V+KD + S+LI PV I
Sbjct: 522 LARVIDVIYKNEDGYTHFGAVLKDFVTSMLIDPVPI 557
Involved in the biosynthesis of germacrene D. Can use farnesyl diphosphate as substrate, but not geranyl diphosphate or geranylgeranyl diphosphate. Produces mainly (-)-germacrene D along with gamma-cadinene.
Vitis vinifera (taxid: 29760)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 7EC: 5
>sp|F6M8H7|SMST_SANMU Probable sesquiterpene synthase OS=Santalum murrayanum GN=STPS PE=3 SV=1 Back     alignment and function description
>sp|F6M8H4|SAST_SANAL Probable sesquiterpene synthase OS=Santalum album GN=SesquiTPS1 PE=3 SV=1 Back     alignment and function description
>sp|Q6Q3H2|TPSVS_VITVI Valencene synthase OS=Vitis vinifera GN=ValCS PE=1 SV=1 Back     alignment and function description
>sp|F6M8H5|SAUST_SANAS Probable sesquiterpene synthase OS=Santalum austrocaledonicum GN=SesquiTPS PE=3 SV=1 Back     alignment and function description
>sp|B5A435|STPS1_SANAL Sesquiterpene synthase OS=Santalum album PE=1 SV=1 Back     alignment and function description
>sp|E3W207|SAUSS_SANAS Sesquiterpene synthase OS=Santalum austrocaledonicum PE=2 SV=1 Back     alignment and function description
>sp|E3W208|SPISS_SANSP Sesquiterpene synthase OS=Santalum spicatum PE=2 SV=1 Back     alignment and function description
>sp|F6M8H6|SPIST_SANSP Probable sesquiterpene synthase OS=Santalum spicatum GN=SesquiTPS PE=3 SV=1 Back     alignment and function description
>sp|Q43714|DCS3_GOSAR (+)-delta-cadinene synthase isozyme A OS=Gossypium arboreum GN=CAD1-A PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query518
392306394556 sesquiterpene synthase [Toona sinensis] 0.978 0.911 0.709 0.0
315134533556 sesquiterpene synthase [Toona sinensis] 0.978 0.911 0.705 0.0
224133712553 predicted protein [Populus trichocarpa] 0.974 0.913 0.652 0.0
224125898554 predicted protein [Populus trichocarpa] 0.971 0.907 0.641 0.0
359493937557 PREDICTED: (-)-germacrene D synthase [Vi 0.963 0.895 0.635 0.0
147828675557 hypothetical protein VITISV_013313 [Viti 0.963 0.895 0.635 0.0
147856860557 hypothetical protein VITISV_030783 [Viti 0.963 0.895 0.633 0.0
347664489557 (E)-beta-caryophyllene synthase [Vitis v 0.963 0.895 0.625 0.0
75223414557 RecName: Full=(-)-germacrene D synthase 0.963 0.895 0.627 0.0
225461172557 PREDICTED: (-)-germacrene D synthase [Vi 0.963 0.895 0.618 0.0
>gi|392306394|dbj|BAM24405.1| sesquiterpene synthase [Toona sinensis] Back     alignment and taxonomy information
 Score =  760 bits (1962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/526 (70%), Positives = 439/526 (83%), Gaps = 19/526 (3%)

Query: 2   QIYHGGQSQEIEELKEEVRRELLGSGVDSLSRLKLIDAILRLGVGYQFERELEEALQNLY 61
           ++ H    Q IEELK+ VRRELL +    LS+L LIDAI RLGVGY FERELEEALQ++Y
Sbjct: 41  KMNHTCHLQAIEELKDAVRRELLTAT--GLSQLNLIDAIQRLGVGYHFERELEEALQHVY 98

Query: 62  DAFSNNFYNIEDNDLYHVALRFRILRQRGYKVSCDIFNKFKDGKGNFKESLKTDVSGMLS 121
               N++++  +++LY ++LRFR+LRQ GY VSCDI NKFKD K NFKESL TDV GMLS
Sbjct: 99  --HKNHYHDDTEDNLYSISLRFRLLRQHGYYVSCDILNKFKDEKDNFKESLTTDVPGMLS 156

Query: 122 LYEAAHLVVHGEDILNEAIAFTTAHLQS---------SMAPQVIHALRQPLYKGLPRIEA 172
           LYEAAH  VHGEDIL+EAIAFTT HL+S         S+A QVIHALRQPL++G+PR+E 
Sbjct: 157 LYEAAHPGVHGEDILDEAIAFTTTHLKSLAIDHLRNPSLASQVIHALRQPLHRGVPRLEN 216

Query: 173 RFFISLYQEHEPLHNKALLKLAKLDFNQVQSLYKIELSEISRWWKDLDFARKLPFARDRV 232
           R +IS+YQ+ E  HNKAL+KL KLDFN VQSL+K ELSEISRWWK+LD A KLPFARDR+
Sbjct: 217 RRYISIYQD-EVSHNKALVKLFKLDFNLVQSLHKKELSEISRWWKELDLANKLPFARDRL 275

Query: 233 VECYFWIVGVYFEPQYSLARKLLTKVISMTSIIDDIYDVYGIPEELDLFTAAIDRWDVSC 292
           VECYFWI+GVY+EPQYSLARK+LTK I+M SIIDDIYDVYG PEEL+LFT AI+RWD SC
Sbjct: 276 VECYFWIIGVYYEPQYSLARKILTKTIAMGSIIDDIYDVYGTPEELNLFTDAIERWDASC 335

Query: 293 IDQLPEYMQTFYVALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNY 352
           +DQLPEYMQ FY ALLDLY EIE+E+A +GWSYRVHYAKE MKIL  GYHDESKWFHNNY
Sbjct: 336 MDQLPEYMQIFYEALLDLYNEIEKEIAKEGWSYRVHYAKEAMKILARGYHDESKWFHNNY 395

Query: 353 VPTMEEYMRVSLVTSGYSMLTAASFLGMDSVVTKEAFDWVSGKPKIIRASTIIGRLMDDI 412
           +PTMEEYM V+LVTSGY+MLT +SFLGMD++VTKE FDWV   PKIIRAS  I RLMDD+
Sbjct: 396 IPTMEEYMHVALVTSGYTMLTTSSFLGMDNIVTKETFDWVFSGPKIIRASGTIARLMDDV 455

Query: 413 KSHKFEQERGHAASAIECYMKEKEREGVSVTEQEVHEELYKKVGDAWKDINEECLMPTEV 472
           KSHKFEQERGHAASA+ECYM   E+ GVS  EQEV +E Y++VG+AWKDIN++ L PT+V
Sbjct: 456 KSHKFEQERGHAASAVECYM---EQHGVS--EQEVCKEFYQQVGNAWKDINQDFLKPTDV 510

Query: 473 PRPLLMRVLNLSRVIDVIYKEGDGYTHVGQVMKDNIASVLIHPVAI 518
           P  +LMRVLNL+RVIDV+YKEGDGYTHVG+VMK+N+AS+LI P+ +
Sbjct: 511 PMTILMRVLNLARVIDVVYKEGDGYTHVGKVMKENVASLLIDPIPV 556

Source: Toona sinensis

Species: Toona sinensis

Genus: Toona

Family: Meliaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|315134533|dbj|BAJ46125.1| sesquiterpene synthase [Toona sinensis] Back     alignment and taxonomy information
>gi|224133712|ref|XP_002321642.1| predicted protein [Populus trichocarpa] gi|222868638|gb|EEF05769.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224125898|ref|XP_002329744.1| predicted protein [Populus trichocarpa] gi|222870652|gb|EEF07783.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359493937|ref|XP_003634696.1| PREDICTED: (-)-germacrene D synthase [Vitis vinifera] gi|302143188|emb|CBI20483.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147828675|emb|CAN68620.1| hypothetical protein VITISV_013313 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147856860|emb|CAN83470.1| hypothetical protein VITISV_030783 [Vitis vinifera] Back     alignment and taxonomy information
>gi|347664489|gb|AEP17005.1| (E)-beta-caryophyllene synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|75223414|sp|Q6Q3H3.1|TPSGD_VITVI RecName: Full=(-)-germacrene D synthase gi|45478053|gb|AAS66357.1| (-)-germacrene D synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|225461172|ref|XP_002282996.1| PREDICTED: (-)-germacrene D synthase [Vitis vinifera] gi|313755404|gb|ADR74193.1| (E)-beta-caryophyllene synthase [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query518
UNIPROTKB|B5A435559 B5A435 "Sesquiterpene synthase 0.934 0.865 0.562 5.5e-148
UNIPROTKB|B2KSJ5571 B2KSJ5 "(+)-gamma-cadinene syn 0.930 0.844 0.497 2.6e-125
UNIPROTKB|J7LMP2565 J7LMP2 "Bicyclogermacrene synt 0.930 0.853 0.467 3.3e-118
UNIPROTKB|J7LJN5555 J7LJN5 "Beta-caryophyllene syn 0.922 0.861 0.481 4.4e-116
UNIPROTKB|B3TPQ6550 B3TPQ6 "Beta-cubebene synthase 0.930 0.876 0.458 9.1e-116
UNIPROTKB|J7LP58564 J7LP58 "Alpha-copaene/delta-ca 0.926 0.851 0.445 1.5e-113
UNIPROTKB|Q49SP5554 Q49SP5 "Germacrene A synthase" 0.922 0.862 0.470 2.2e-112
UNIPROTKB|Q49SP4545 Q49SP4 "Germacrene D synthase 0.918 0.873 0.449 1.2e-111
UNIPROTKB|Q8LSC3583 Q8LSC3 "Germacrene A synthase 0.926 0.823 0.405 6.5e-106
UNIPROTKB|E2E2N7555 TPS4 "Bicyclogermacrene syntha 0.907 0.846 0.432 4.6e-105
UNIPROTKB|B5A435 B5A435 "Sesquiterpene synthase" [Santalum album (taxid:35974)] Back     alignment and assigned GO terms
 Score = 1445 (513.7 bits), Expect = 5.5e-148, P = 5.5e-148
 Identities = 282/501 (56%), Positives = 355/501 (70%)

Query:    28 VDS-LSRLKLIDAILRLGVGYQFERELEEALQNLY--DAFSNNFYNIEDNDLYHVALRFR 84
             VD  L +L +IDA  RLG+ Y FE E+EE+L+++Y      NN +    +DLY VAL FR
Sbjct:    66 VDKPLQQLNIIDATQRLGIAYHFENEIEESLEHIYLHTYVENNCFQ-GSHDLYSVALWFR 124

Query:    85 ILRQRGYKVSCDIXXXXXXXXXXXXESLKTDVSGMLSLYEAAHLVVHGEDILNEAIAFTT 144
             +LRQ GYKVSCD+             SL  D  G+L LYEA HL VHGE++L++A+ F  
Sbjct:   125 LLRQDGYKVSCDVFDKFRDYEDNFKNSLMEDAKGLLELYEATHLSVHGEEMLDDALEFAK 184

Query:   145 AHLQS-------SMAPQVIHALRQPLYKGLPRIEARFFISLYQEHEPLHNXXXXXXXXXD 197
               L+S        +A QV HAL +PL KGLPR+EA +F  +Y+ ++  HN         D
Sbjct:   185 TRLESIVNHLNYPLAEQVRHALYRPLRKGLPRLEAVYFFRIYEAYDS-HNKALLKLAKLD 243

Query:   198 FNQVQSLYKIELSEISRWWKDLDFARKLPFARDRVVECYFWIVGVYFEPQYSLARKLLTK 257
             FN +QSL+K ELS+++RWWK LDFA K PFARDR+VE YFW++GVYFEPQYSLARK++ K
Sbjct:   244 FNLLQSLHKKELSDMARWWKSLDFAAKFPFARDRLVEGYFWVLGVYFEPQYSLARKIIIK 303

Query:   258 VISMTSIIDDIYDVYGIPEELDLFTAAIDRWDVSCIDQLPEYMQTFYVALLDLYKEIEEE 317
             V +M S IDDIYD YG  +EL+LFT A+ RWDV  +DQLPEYM+  Y ++LD+Y EIEEE
Sbjct:   304 VFTMISTIDDIYDAYGTLDELELFTKAMQRWDVGSLDQLPEYMKPCYKSILDVYNEIEEE 363

Query:   318 LATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAASF 377
             +  +G  +R+HYAKE MK LV GY DE+KW H  YVPT EEYM V+LVTSGY+ LT  S+
Sbjct:   364 MDNQGSLFRMHYAKEVMKKLVEGYMDEAKWCHEKYVPTFEEYMPVALVTSGYTFLTTISY 423

Query:   378 LGMDSVVTKEAFDWVSGKPKIIRASTIIGRLMDDIKSHKFEQERGHAASAIECYMKEKER 437
             LGM  + +KEAFDW+   P +I AS  + RLMDD++SHKFEQERGH AS IECYMK+   
Sbjct:   424 LGMGEIASKEAFDWLFSHPPVIEASESVCRLMDDMRSHKFEQERGHVASGIECYMKQ--- 480

Query:   438 EGVSVTEQEVHEELYKKVGDAWKDINEECLMPTEVPRPLLMRVLNLSRVIDVIYKEGDGY 497
                 VTE+E H+E  K++  AWKDINEECL P  VP+PLLMR+LNL+RVIDVIYK  DGY
Sbjct:   481 --YGVTEEEAHDEFRKQLVKAWKDINEECLRPYRVPKPLLMRILNLTRVIDVIYKNEDGY 538

Query:   498 THVGQVMKDNIASVLIHPVAI 518
             THV + MKDNIAS+LI P+ +
Sbjct:   539 THVKKAMKDNIASLLIDPMIV 559
GO:0010334 "sesquiterpene synthase activity" evidence=IDA
GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA
UNIPROTKB|B2KSJ5 B2KSJ5 "(+)-gamma-cadinene synthase" [Cucumis melo (taxid:3656)] Back     alignment and assigned GO terms
UNIPROTKB|J7LMP2 J7LMP2 "Bicyclogermacrene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|J7LJN5 J7LJN5 "Beta-caryophyllene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|B3TPQ6 B3TPQ6 "Beta-cubebene synthase" [Magnolia grandiflora (taxid:3406)] Back     alignment and assigned GO terms
UNIPROTKB|J7LP58 J7LP58 "Alpha-copaene/delta-cadinene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP5 Q49SP5 "Germacrene A synthase" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP4 Q49SP4 "Germacrene D synthase 1" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms
UNIPROTKB|Q8LSC3 Q8LSC3 "Germacrene A synthase long form" [Cichorium intybus (taxid:13427)] Back     alignment and assigned GO terms
UNIPROTKB|E2E2N7 TPS4 "Bicyclogermacrene synthase" [Origanum vulgare (taxid:39352)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P93665DCS1_GOSHI4, ., 2, ., 3, ., 1, 30.54380.95550.8935N/Ano
J9R5V4TPS2_VALOF4, ., 2, ., 3, ., 1, 3, 90.51160.95360.8790N/Ano
O49853DCS4_GOSAR4, ., 2, ., 3, ., 1, 30.54030.96910.9061N/Ano
Q84UU4HUMS_ARATH4, ., 2, ., 3, ., -0.41430.95940.9085yesno
O23945PINS_FRAVE4, ., 2, ., 3, ., 1, 40.53430.97680.9100N/Ano
F6M8H5SAUST_SANAS4, ., 2, ., 3, ., -0.58420.98060.9039N/Ano
F6M8H4SAST_SANAL4, ., 2, ., 3, ., -0.59150.97490.9033N/Ano
F6M8H7SMST_SANMU4, ., 2, ., 3, ., -0.59230.97290.8967N/Ano
F6M8H6SPIST_SANSP4, ., 2, ., 3, ., -0.56320.98060.9039N/Ano
Q43714DCS3_GOSAR4, ., 2, ., 3, ., 1, 30.56530.95940.8954N/Ano
Q39760DCS2_GOSAR4, ., 2, ., 3, ., 1, 30.55160.95550.8935N/Ano
Q39761DCS1_GOSAR4, ., 2, ., 3, ., 1, 30.54580.95550.8935N/Ano
E3W207SAUSS_SANAS4, ., 2, ., 3, ., -0.5750.97290.9016N/Ano
E3W208SPISS_SANSP4, ., 2, ., 3, ., -0.57030.97490.8985N/Ano
B5A435STPS1_SANAL4, ., 2, ., 3, ., -0.58500.97870.9069N/Ano
B2KSJ5GCSY1_CUCME4, ., 2, ., 3, ., 9, 20.51040.97290.8826N/Ano
Q6Q3H3TPSGD_VITVI4, ., 2, ., 3, ., 7, 50.62790.96330.8958yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.30.963
3rd Layer4.2.3.26LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query518
cd00684542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 0.0
cd00868284 cd00868, Terpene_cyclase_C1, Terpene cyclases, Cla 1e-116
pfam03936270 pfam03936, Terpene_synth_C, Terpene synthase famil 1e-115
pfam01397177 pfam01397, Terpene_synth, Terpene synthase, N-term 4e-64
PLN02279784 PLN02279, PLN02279, ent-kaur-16-ene synthase 4e-43
cd00385243 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth 1e-39
PLN02592800 PLN02592, PLN02592, ent-copalyl diphosphate syntha 6e-28
PLN0215096 PLN02150, PLN02150, terpene synthase/cyclase famil 5e-19
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
 Score =  691 bits (1785), Expect = 0.0
 Identities = 286/519 (55%), Positives = 364/519 (70%), Gaps = 20/519 (3%)

Query: 10  QEIEELKEEVRRELLGS--GVDSLSRLKLIDAILRLGVGYQFERELEEALQNLYDAFSNN 67
           +EIEELKEEVR+ L  S   VD   RL LID + RLG+ Y FE E++E L  +Y  ++  
Sbjct: 31  EEIEELKEEVRKMLEDSEYPVDLFERLWLIDRLQRLGISYHFEDEIKEILDYIYRYWTER 90

Query: 68  FYNIEDNDLYHVALRFRILRQRGYKVSCDIFNKFKDGKGNFKESLKTDVSGMLSLYEAAH 127
             + ED DLY  AL FR+LRQ GY VS D+F KFKD  G FKESL  DV GMLSLYEA+H
Sbjct: 91  GESNED-DLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASH 149

Query: 128 LVVHGEDILNEAIAFTTAHLQS----------SMAPQVIHALRQPLYKGLPRIEARFFIS 177
           L   GEDIL+EA++FTT HL+            ++ ++ +AL  PL+  LPR+EAR++I 
Sbjct: 150 LSFPGEDILDEALSFTTKHLEEKLESNWIIDPDLSGEIEYALEIPLHASLPRLEARWYIE 209

Query: 178 LYQEHEPLHNKALLKLAKLDFNQVQSLYKIELSEISRWWKDLDFARKLPFARDRVVECYF 237
            Y E E  HN+ LL+LAKLDFN +Q+L++ EL  +SRWWKDLD A KLPFARDR+VECYF
Sbjct: 210 FY-EQEDDHNETLLELAKLDFNILQALHQEELKILSRWWKDLDLASKLPFARDRLVECYF 268

Query: 238 WIVGVYFEPQYSLARKLLTKVISMTSIIDDIYDVYGIPEELDLFTAAIDRWDVSCIDQLP 297
           W  G YFEPQYSLAR  L K I++ ++IDD YDVYG  EEL+LFT A++RWD+S IDQLP
Sbjct: 269 WAAGTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEELELFTEAVERWDISAIDQLP 328

Query: 298 EYMQTFYVALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTME 357
           EYM+  + ALL+   EIEEEL  +G SY V Y KE  K LV  Y  E+KW H  YVPT E
Sbjct: 329 EYMKIVFKALLNTVNEIEEELLKEGGSYVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFE 388

Query: 358 EYMRVSLVTSGYSMLTAASFLGMDSVVTKEAFDWVSGKPKIIRASTIIGRLMDDIKSHKF 417
           EYM  +LV+ G   L   SFLGM  ++T+EAF+W+  +PK++RAS+ IGRLM+DI +++ 
Sbjct: 389 EYMENALVSIGLGPLLLTSFLGMGDILTEEAFEWLESRPKLVRASSTIGRLMNDIATYED 448

Query: 418 EQERGHAASAIECYMKEKEREGVSVTEQEVHEELYKKVGDAWKDINEECLMP-TEVPRPL 476
           E +RG  AS+IECYMKE       V+E+E  EE+ K + DAWK++NEE L P ++VPRP+
Sbjct: 449 EMKRGDVASSIECYMKEYG-----VSEEEAREEIKKMIEDAWKELNEEFLKPSSDVPRPI 503

Query: 477 LMRVLNLSRVIDVIYKEGDGYTHVGQVMKDNIASVLIHP 515
             R LNL+RVIDV YKEGDG+TH    +KD+I S+L  P
Sbjct: 504 KQRFLNLARVIDVFYKEGDGFTHPEGEIKDHITSLLFEP 542

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542
>gnl|CDD|173837 cd00868, Terpene_cyclase_C1, Terpene cyclases, Class 1 Back     alignment and domain information
>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain Back     alignment and domain information
>gnl|CDD|216477 pfam01397, Terpene_synth, Terpene synthase, N-terminal domain Back     alignment and domain information
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase Back     alignment and domain information
>gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase Back     alignment and domain information
>gnl|CDD|177811 PLN02150, PLN02150, terpene synthase/cyclase family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 518
cd00684542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 100.0
PLN02279784 ent-kaur-16-ene synthase 100.0
PLN02592800 ent-copalyl diphosphate synthase 100.0
PF01397183 Terpene_synth: Terpene synthase, N-terminal domain 100.0
PF03936270 Terpene_synth_C: Terpene synthase family, metal bi 100.0
cd00868284 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terp 100.0
cd00687303 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl 100.0
PLN0215096 terpene synthase/cyclase family protein 99.96
cd00385243 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym 99.85
PF06330376 TRI5: Trichodiene synthase (TRI5); InterPro: IPR02 97.83
cd00686357 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene C 97.5
PF00494267 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR 88.65
TIGR02749322 prenyl_cyano solanesyl diphosphate synthase. Membe 83.18
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
Probab=100.00  E-value=3.1e-147  Score=1205.62  Aligned_cols=501  Identities=57%  Similarity=0.951  Sum_probs=485.6

Q ss_pred             hHHHHHHHHHHHHHHhhcc--CcChhhhhHHHHHHHHhCCccccHHHHHHHHHHHHHhcccCcCCCCCCChhHHHHHHHH
Q 035568            8 QSQEIEELKEEVRRELLGS--GVDSLSRLKLIDAILRLGVGYQFERELEEALQNLYDAFSNNFYNIEDNDLYHVALRFRI   85 (518)
Q Consensus         8 ~~~~~~~lk~~v~~~l~~~--~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~~~~~~~~~~~~~~~~dl~~~al~FRl   85 (518)
                      +.+++++||++||+||...  +.|++++|+|||+||||||+|||++||+++|+++|++|.++| .....||++|||+|||
T Consensus        29 ~~~~~~~lk~~v~~~~~~~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~-~~~~~dl~~~al~FRl  107 (542)
T cd00684          29 LEEEIEELKEEVRKMLEDSEYPVDLFERLWLIDRLQRLGISYHFEDEIKEILDYIYRYWTERG-ESNEDDLYTTALGFRL  107 (542)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHhhcccc-cccCCCHHHHHHHHHH
Confidence            5789999999999999865  789999999999999999999999999999999999986543 1235799999999999


Q ss_pred             hhhcCceechhhhhcccccccccccccccchhhhhhHhhhcccCCCCchHHHHHHHHHHhhcc----------cCcHHHH
Q 035568           86 LRQRGYKVSCDIFNKFKDGKGNFKESLKTDVSGMLSLYEAAHLVVHGEDILNEAIAFTTAHLQ----------SSMAPQV  155 (518)
Q Consensus        86 LR~hGy~vS~dvf~~F~d~~g~F~~~~~~dv~~lL~LyeAs~l~~~gE~iLdea~~ft~~~L~----------~~l~~~V  155 (518)
                      ||||||+||||||++|+|++|+|++++.+||+||||||||||+++|||+|||||++||++||+          ++|+++|
T Consensus       108 LR~~Gy~vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~~~gE~iLdeA~~ft~~~L~~~~~~~~~~~~~l~~~V  187 (542)
T cd00684         108 LRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILDEALSFTTKHLEEKLESNWIIDPDLSGEI  187 (542)
T ss_pred             HHHcCCCcCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHhhccCCCCchHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999          5799999


Q ss_pred             HHHccCCccCCchhhHHhhhhhhhhccCCcccHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCCCCchhhhhhhHh
Q 035568          156 IHALRQPLYKGLPRIEARFFISLYQEHEPLHNKALLKLAKLDFNQVQSLYKIELSEISRWWKDLDFARKLPFARDRVVEC  235 (518)
Q Consensus       156 ~~aL~~P~~~~~~r~e~r~yI~~y~~~~~~~n~~ll~lAkldFn~~Q~~hq~El~~l~rWwk~~~l~~~l~faRdR~ve~  235 (518)
                      ++||++|||+++||||||+||++|++ ++++|++||||||+|||+||++||+||+++++||+++||.++|||+|+|+++|
T Consensus       188 ~~aL~~P~~~~~~rlear~yi~~Y~~-~~~~n~~lLelAkldfn~~Q~~hq~El~~~~rWwk~~gL~~~l~~aRdr~ve~  266 (542)
T cd00684         188 EYALEIPLHASLPRLEARWYIEFYEQ-EDDHNETLLELAKLDFNILQALHQEELKILSRWWKDLDLASKLPFARDRLVEC  266 (542)
T ss_pred             HHHccCchhcCCchHHHHHHHHHhCC-CccccHHHHHHHHHHHHHHhHhHHHHHHHHhHHHHhcCCcccCCcccchhHHH
Confidence            99999999999999999999999999 99999999999999999999999999999999999999988889999999999


Q ss_pred             HHHHhccccCcchhHHHHHHHHHhhhhhhhhcccccCCCHHHHHHHHHHhhhcCccccccCChhHHHHHHHHHHHHHHHH
Q 035568          236 YFWIVGVYFEPQYSLARKLLTKVISMTSIIDDIYDVYGIPEELDLFTAAIDRWDVSCIDQLPEYMQTFYVALLDLYKEIE  315 (518)
Q Consensus       236 yf~~~a~~feP~~s~~Rl~laK~~~l~~i~DD~fD~~gt~eEl~~~t~ai~rWd~~~~~~lpe~mk~~f~al~~~~~ei~  315 (518)
                      |||++|++|+|++|.+|+++||+++|+|++||+||.|||++|++.||+||+|||.++++.+|+|||+||.++++++++++
T Consensus       267 yf~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~fD~~gt~eEl~~ft~ai~rwd~~~~~~lPe~mk~~~~al~~~~~ei~  346 (542)
T cd00684         267 YFWAAGTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEELELFTEAVERWDISAIDQLPEYMKIVFKALLNTVNEIE  346 (542)
T ss_pred             HHHHHhcccCccchHHHHHHHHHHHHHhhhHhhhccCCCHHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCcchHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHhhhhcccchhHHHHHHHHhcCCCCchHHHhhccCc
Q 035568          316 EELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAASFLGMDSVVTKEAFDWVSGK  395 (518)
Q Consensus       316 ~~~~~~~~~~~~~~~k~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~ev~e~~~~~  395 (518)
                      .++.++|+.+++.+++++|++++++|++||+|+++||+||++|||++|.+|+|+++++++++++||+.+|+++++|+..+
T Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~a~l~EA~w~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~  426 (542)
T cd00684         347 EELLKEGGSYVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLLTSFLGMGDILTEEAFEWLESR  426 (542)
T ss_pred             HHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhHHhhHHHHHHHHHHhcCCCCCHHHHHHHhcc
Confidence            99998888889999999999999999999999999999999999999999999999999999999999999999997677


Q ss_pred             hHHHHHHhhhhhhccCccchhhhhhcCCCchHHHHHHhhcccCCcccCHHHHHHHHHHHHHHHHHHHHhhccCC-CCCCH
Q 035568          396 PKIIRASTIIGRLMDDIKSHKFEQERGHAASAIECYMKEKEREGVSVTEQEVHEELYKKVGDAWKDINEECLMP-TEVPR  474 (518)
Q Consensus       396 ~~i~~~~~~i~RL~NDI~S~~kE~~~G~~~n~V~cym~e~~~~g~~vS~eeA~~~i~~~i~~~~k~ln~~~l~~-~~~p~  474 (518)
                      |+|+++++.++||+|||+|+++|+++|+++|+|.|||+|+   |  +|+|+|+++++++|+++||++|++++++ +++|+
T Consensus       427 ~~l~~~~~~i~rL~NDi~S~~kE~~rGdv~n~V~~ymke~---g--~s~eeA~~~i~~~ie~~wk~ln~e~l~~~~~~p~  501 (542)
T cd00684         427 PKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKEY---G--VSEEEAREEIKKMIEDAWKELNEEFLKPSSDVPR  501 (542)
T ss_pred             HHHHHHHHHHHHHhcChhhhHHHHhcCCcccHHHHHHHhc---C--CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCH
Confidence            9999999999999999999999999999999999999999   9  9999999999999999999999999987 78999


Q ss_pred             HHHHHHHHHHhhhhhhcccCCCCCCCChhHHHHHHHhcccc
Q 035568          475 PLLMRVLNLSRVIDVIYKEGDGYTHVGQVMKDNIASVLIHP  515 (518)
Q Consensus       475 ~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~p  515 (518)
                      +|+++++|++|+++++|+++||||.|++.||++|++||++|
T Consensus       502 ~~~~~~~n~~r~~~~~Y~~~D~~t~~~~~~~~~i~~ll~~p  542 (542)
T cd00684         502 PIKQRFLNLARVIDVFYKEGDGFTHPEGEIKDHITSLLFEP  542 (542)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCC
Confidence            99999999999999999999999999878999999999998

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1 Back     alignment and domain information
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 Back     alignment and domain information
>PLN02150 terpene synthase/cyclase family protein Back     alignment and domain information
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4 Back     alignment and domain information
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1 Back     alignment and domain information
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2 Back     alignment and domain information
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query518
3g4d_A554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 1e-146
3lz9_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 1e-120
5eau_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-120
3m01_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 1e-120
4di5_A535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 1e-120
5eas_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-120
5eat_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-120
1hxc_A548 Crystal Structure Of Teas C440w Length = 548 1e-120
1hx9_A548 Crystal Structure Of Teas W273s Form 1 Length = 548 1e-118
1hxg_A548 Crystal Structure Of Teas W273sC440W Length = 548 1e-118
3n0f_A555 Crystal Structure Of Isoprene Synthase From Grey Po 2e-82
2j5c_A569 Rational Conversion Of Substrate And Product Specif 3e-76
1n1b_A549 Crystal Structure Of (+)-bornyl Diphosphate Synthas 7e-72
2ong_A543 Crystal Structure Of Of Limonene Synthase With 2- F 3e-71
3sae_A817 Structure Of A Three-Domain Sesquiterpene Synthase: 1e-69
3s9v_A785 Abietadiene Synthase From Abies Grandis Length = 78 1e-62
3p5p_A764 Crystal Structure Of Taxadiene Synthase From Pacifi 5e-56
3pya_A727 Crystal Structure Of Ent-Copalyl Diphosphate Syntha 5e-16
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure 
Iteration: 1

 Score =  514 bits (1324), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 258/498 (51%), Positives = 337/498 (67%), Gaps = 18/498 (3%)
Query: 28  VDSLSRLKLIDAILRLGVGYQFERELEEALQNLYDAFSNNFYNIEDNDLYHVALRFRILR 87
            +S  +L  ID++ RLGV Y F +E+E+ L+N+Y    NN  N  +NDLY  ++RFR+LR
Sbjct: 68  ANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIY---HNN--NDAENDLYTTSIRFRLLR 122
Query: 88  QRGYKVSCDIXXXXXXXXXXXXESLKTDVSGMLSLYEAAHLVVHGEDILNEAIAFTTAHL 147
           + GY VSCD+             S+ +DV G+L LY+A++L VHGEDIL+EAI+FTT HL
Sbjct: 123 EHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTTHHL 182
Query: 148 QSSMAP-------QVIHALRQPLYKGLPRIEARFFISLYQEHEPLHNXXXXXXXXXDFNQ 200
             ++A        +V HAL+Q + +GLPR+EAR ++S+YQ+ E  HN         DFN 
Sbjct: 183 SLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIES-HNKALLEFAKIDFNM 241
Query: 201 VQSLYKIELSEISRWWKDLDFARKLPFARDRVVECYFWIVGVYFEPQYSLARKLLTKVIS 260
           +Q L++ ELSEI RWWKDLDF RKLP+ARDRVVE YFWI GVYFEPQYSL RK+LTKVI+
Sbjct: 242 LQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIA 301
Query: 261 MTSIIDDIYDVYGIPEELDLFTAAIDRWDVSCIDQLPEYMQTFYVALLDLYKEIEEELAT 320
           M SI+DD YD Y   EEL  +T AI+RWD+ CID++PEYM+  Y ALLD+Y+E+ + +A 
Sbjct: 302 MASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAE 361
Query: 321 KGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAASFLGM 380
            G  YRV YAK  M  L   Y  E+KW   NY P+ EE+   +L T GY+ML   SF+GM
Sbjct: 362 HGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGM 421
Query: 381 DSVVTKEAFDWVSGKPKIIRASTIIGRLMDDIKSHKFEQERGHAASAIECYMKEKEREGV 440
             +VT E F W +  PKII+ASTII R MDD+  HKF+  R    SAIECYM+E      
Sbjct: 422 GDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEE-----Y 476
Query: 441 SVTEQEVHEELYKKVGDAWKDINEECLMPTEVPRPLLMRVLNLSRVIDVIYKEGDGYTHV 500
            VT QE ++   K V  AWKD+N+E L PTE+P  +L R LNL+RV+DV+Y+EGDGYT+V
Sbjct: 477 GVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYV 536
Query: 501 GQVMKDNIASVLIHPVAI 518
           G+  K  I S+LI P+A+
Sbjct: 537 GKAAKGGITSLLIEPIAL 554
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 Back     alignment and structure
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 Back     alignment and structure
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 Back     alignment and structure
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 Back     alignment and structure
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From Arabidopsis Thaliana In Complex With (S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate Length = 727 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query518
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 0.0
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 0.0
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 0.0
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 0.0
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 1e-180
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 1e-178
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 1e-167
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 1e-164
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 1e-164
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 1e-109
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 2e-37
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 3e-33
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 2e-18
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-13
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 4e-12
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 7e-05
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 Back     alignment and structure
 Score =  542 bits (1397), Expect = 0.0
 Identities = 276/522 (52%), Positives = 365/522 (69%), Gaps = 18/522 (3%)

Query: 4   YHGGQSQEIEELKEEVRRELLGSGVDSLSRLKLIDAILRLGVGYQFERELEEALQNLYDA 63
                 +  ++LKEEVR+ ++    +S  +L  ID++ RLGV Y F +E+E+ L+N+Y  
Sbjct: 44  IDAETEKRHQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIY-- 101

Query: 64  FSNNFYNIEDNDLYHVALRFRILRQRGYKVSCDIFNKFKDGKGNFKESLKTDVSGMLSLY 123
              +  N  +NDLY  ++RFR+LR+ GY VSCD+FNKFKD +GNFK S+ +DV G+L LY
Sbjct: 102 ---HNNNDAENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELY 158

Query: 124 EAAHLVVHGEDILNEAIAFTTAHLQS-------SMAPQVIHALRQPLYKGLPRIEARFFI 176
           +A++L VHGEDIL+EAI+FTT HL          ++ +V HAL+Q + +GLPR+EAR ++
Sbjct: 159 QASYLRVHGEDILDEAISFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYL 218

Query: 177 SLYQEHEPLHNKALLKLAKLDFNQVQSLYKIELSEISRWWKDLDFARKLPFARDRVVECY 236
           S+YQ+    HNKALL+ AK+DFN +Q L++ ELSEI RWWKDLDF RKLP+ARDRVVE Y
Sbjct: 219 SVYQD-IESHNKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGY 277

Query: 237 FWIVGVYFEPQYSLARKLLTKVISMTSIIDDIYDVYGIPEELDLFTAAIDRWDVSCIDQL 296
           FWI GVYFEPQYSL RK+LTKVI+M SI+DD YD Y   EEL  +T AI+RWD+ CID++
Sbjct: 278 FWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEI 337

Query: 297 PEYMQTFYVALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTM 356
           PEYM+  Y ALLD+Y+E+ + +A  G  YRV YAK  M  L   Y  E+KW   NY P+ 
Sbjct: 338 PEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSF 397

Query: 357 EEYMRVSLVTSGYSMLTAASFLGMDSVVTKEAFDWVSGKPKIIRASTIIGRLMDDIKSHK 416
           EE+   +L T GY+ML   SF+GM  +VT E F W +  PKII+ASTII R MDD+  HK
Sbjct: 398 EEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHK 457

Query: 417 FEQERGHAASAIECYMKEKEREGVSVTEQEVHEELYKKVGDAWKDINEECLMPTEVPRPL 476
           F+  R    SAIECYM+E       VT QE ++   K V  AWKD+N+E L PTE+P  +
Sbjct: 458 FKHRREDDCSAIECYMEEY-----GVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEV 512

Query: 477 LMRVLNLSRVIDVIYKEGDGYTHVGQVMKDNIASVLIHPVAI 518
           L R LNL+RV+DV+Y+EGDGYT+VG+  K  I S+LI P+A+
Sbjct: 513 LNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIAL 554
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Length = 337 Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Length = 382 Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Length = 320 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Length = 300 Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query518
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 100.0
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 100.0
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 100.0
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 100.0
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 100.0
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 100.0
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 100.0
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 100.0
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 100.0
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 100.0
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 100.0
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 100.0
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 100.0
1yyq_A374 Trichodiene synthase; terpenoid cyclase fold, site 99.75
3ipi_A295 Geranyltranstransferase; isoprene biosynthesis, he 86.0
3lmd_A360 Geranylgeranyl pyrophosphate synthase; isoprenyl d 83.32
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
Probab=100.00  E-value=1.2e-159  Score=1291.69  Aligned_cols=501  Identities=55%  Similarity=0.961  Sum_probs=475.7

Q ss_pred             chHHHHHHHHHHHHHHhhccCcChhhhhHHHHHHHHhCCccccHHHHHHHHHHHHHhcccCcCCCCCCChhHHHHHHHHh
Q 035568            7 GQSQEIEELKEEVRRELLGSGVDSLSRLKLIDAILRLGVGYQFERELEEALQNLYDAFSNNFYNIEDNDLYHVALRFRIL   86 (518)
Q Consensus         7 ~~~~~~~~lk~~v~~~l~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~~~~~~~~~~~~~~~~dl~~~al~FRlL   86 (518)
                      .+.+|+++||+|||+||.++..|++++|+|||+||||||+|||++||+++|+++|++ .    .....||++|||+||||
T Consensus        47 ~~~~~~e~Lk~eVr~~l~~~~~~~~~~l~lID~lqrLGi~~hF~~EI~~~L~~i~~~-~----~~~~~dl~~~al~FRlL  121 (554)
T 3g4d_A           47 ETEKRHQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHN-N----NDAENDLYTTSIRFRLL  121 (554)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHHTTCGGGCHHHHHHHHHHHHHS-C----CCTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHhc-c----CCCCCCHHHHHHHHHHH
Confidence            468899999999999997545799999999999999999999999999999999985 1    12237999999999999


Q ss_pred             hhcCceechhhhhcccccccccccccccchhhhhhHhhhcccCCCCchHHHHHHHHHHhhcc-------cCcHHHHHHHc
Q 035568           87 RQRGYKVSCDIFNKFKDGKGNFKESLKTDVSGMLSLYEAAHLVVHGEDILNEAIAFTTAHLQ-------SSMAPQVIHAL  159 (518)
Q Consensus        87 R~hGy~vS~dvf~~F~d~~g~F~~~~~~dv~~lL~LyeAs~l~~~gE~iLdea~~ft~~~L~-------~~l~~~V~~aL  159 (518)
                      |||||+||||||++|+|++|+|++++.+||+||||||||||+++|||+|||||++||++||+       ++|+++|+|||
T Consensus       122 R~hGy~VS~dvf~~F~~~~g~F~~~l~~d~~glL~LYeAs~l~~~gE~iLdeA~~fs~~~L~~~~~~~~~~l~~~V~~aL  201 (554)
T 3g4d_A          122 REHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTTHHLSLAVASLDHPLSEEVSHAL  201 (554)
T ss_dssp             HHTTCCCCGGGGGGGBCTTSSBCHHHHHCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHSTTCCTTHHHHHHHHH
T ss_pred             HhcCCCCChhHHhhhcccCCCcccccccchHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999998       57999999999


Q ss_pred             cCCccCCchhhHHhhhhhhhhccCCcccHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCCCCchhhhhhhHhHHHH
Q 035568          160 RQPLYKGLPRIEARFFISLYQEHEPLHNKALLKLAKLDFNQVQSLYKIELSEISRWWKDLDFARKLPFARDRVVECYFWI  239 (518)
Q Consensus       160 ~~P~~~~~~r~e~r~yI~~y~~~~~~~n~~ll~lAkldFn~~Q~~hq~El~~l~rWwk~~~l~~~l~faRdR~ve~yf~~  239 (518)
                      +.|||+++||+|||+||++|++ ++++|++||||||||||+||++||+||++++||||++||.++|||||||++|||||+
T Consensus       202 ~~P~~~~l~rlear~yI~~Y~~-~~~~n~~lLelAkldFn~~Q~~hq~El~~l~rWwk~~~l~~~L~faRdr~ve~yfw~  280 (554)
T 3g4d_A          202 KQSIRRGLPRVEARHYLSVYQD-IESHNKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWI  280 (554)
T ss_dssp             HCCTTTSCHHHHHHHHHHHHHS-STTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHH
T ss_pred             CCCccCCchHHHHHHHHHHhCc-CccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCcccCCchHHHHHHHHHHH
Confidence            9999999999999999999999 999999999999999999999999999999999999999889999999999999999


Q ss_pred             hccccCcchhHHHHHHHHHhhhhhhhhcccccCCCHHHHHHHHHHhhhcCccccccCChhHHHHHHHHHHHHHHHHHHHH
Q 035568          240 VGVYFEPQYSLARKLLTKVISMTSIIDDIYDVYGIPEELDLFTAAIDRWDVSCIDQLPEYMQTFYVALLDLYKEIEEELA  319 (518)
Q Consensus       240 ~a~~feP~~s~~Rl~laK~~~l~~i~DD~fD~~gt~eEl~~~t~ai~rWd~~~~~~lpe~mk~~f~al~~~~~ei~~~~~  319 (518)
                      +|++|||+||.+|+++||++++++++||+||+|||+|||++||+||+|||++++++||+|||+||.+|+|+++|++.++.
T Consensus       281 ~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~e~~~~~~  360 (554)
T 3g4d_A          281 SGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVA  360 (554)
T ss_dssp             HHHCCSGGGHHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCCGGGGGGSCGGGHHHHHHHHHHHHHHHHHHG
T ss_pred             HHhhCCccccHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             hcCCcchHHHHHHHHHHHHHHHHHHHhHhcCCCCCChHHHHhhhhcccchhHHHHHHHHhcCCCCchHHHhhccCchHHH
Q 035568          320 TKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSGYSMLTAASFLGMDSVVTKEAFDWVSGKPKII  399 (518)
Q Consensus       320 ~~~~~~~~~~~k~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~i~  399 (518)
                      ++||+++++|++++|+++++||++||+|+++||+||+||||+||++|+|+++++++++++||+.+|+++++|++++|+|+
T Consensus       361 ~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~  440 (554)
T 3g4d_A          361 EHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAASDPKII  440 (554)
T ss_dssp             GGTCTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHHHHHHTSCTTSCHHHHHHHHTCCHHH
T ss_pred             HcCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHHHHHHHhcCCCCCHHHHHhccccHHHH
Confidence            99998999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhccCccchhhhhhcCCCchHHHHHHhhcccCCcccCHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHH
Q 035568          400 RASTIIGRLMDDIKSHKFEQERGHAASAIECYMKEKEREGVSVTEQEVHEELYKKVGDAWKDINEECLMPTEVPRPLLMR  479 (518)
Q Consensus       400 ~~~~~i~RL~NDI~S~~kE~~~G~~~n~V~cym~e~~~~g~~vS~eeA~~~i~~~i~~~~k~ln~~~l~~~~~p~~~~~~  479 (518)
                      +++++|+||+|||+||++|+++|+++|+|+|||+||   |  +|+|+|++++++||+++||+||+++++++++|++|+++
T Consensus       441 ~~~~~I~RL~NDI~S~k~E~~rG~van~V~cYMke~---G--vSeEeA~~~i~~~Ie~~wK~lN~e~l~~~~~p~~~~~~  515 (554)
T 3g4d_A          441 QASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEY---G--VTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNR  515 (554)
T ss_dssp             HHHHHHHHHHHHHHHHCC------CCCHHHHHHHHH---T--CCHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHH
T ss_pred             HHHHHHHHHhcccchhhhhhccCCccHHHHHHHHhc---C--CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence            999999999999999999999999999999999999   9  99999999999999999999999999988999999999


Q ss_pred             HHHHHhhhhhhcccCCCCCCCChhHHHHHHHhcccccCC
Q 035568          480 VLNLSRVIDVIYKEGDGYTHVGQVMKDNIASVLIHPVAI  518 (518)
Q Consensus       480 ~~n~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~pi~~  518 (518)
                      ++|+||++++||+++||||.|++.||++|++||++|||+
T Consensus       516 ~~NlaR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~l  554 (554)
T 3g4d_A          516 SLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIAL  554 (554)
T ss_dssp             HHHHHHHHHHHSCC-----CCCHHHHHHHHHHHTCCCCC
T ss_pred             HHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCCCCC
Confidence            999999999999999999999878999999999999986
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Back     alignment and structure
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A Back     alignment and structure
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei} Back     alignment and structure
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 518
d1n1ba2328 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth 1e-152
d5easa2328 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase 1e-146
d5easa1197 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase 2e-60
d1n1ba1207 a.102.4.1 (A:64-270) (+)-bornyl diphosphate syntha 3e-57
d1ps1a_311 a.128.1.4 (A:) Pentalenene synthase {Streptomyces 1e-55
d1di1a_300 a.128.1.4 (A:) Aristolochene synthase {Fungus (Pen 4e-38
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328 Back     information, alignment and structure

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

 Score =  436 bits (1123), Expect = e-152
 Identities = 109/332 (32%), Positives = 178/332 (53%), Gaps = 6/332 (1%)

Query: 187 NKALLKLAKLDFNQVQSLYKIELSEISRWWKDLDFARKLPFARDRVVECYFWIVGVYFEP 246
           N  + +LAKL+FN +Q+ ++ EL ++SRWW  L F  KLPF RDR+VE +FW VG++   
Sbjct: 2   NPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPH 61

Query: 247 QYSLARKLLTKVISMTSIIDDIYDVYGIPEELDLFTAAIDRWDVSCIDQLPEYMQTFYVA 306
           Q+   RK+   +I + ++IDDIYDVYG  +EL+LFT    RWD   I +LP YMQ  Y  
Sbjct: 62  QHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWG 121

Query: 307 LLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVT 366
           + +   +   ++  +   + + Y ++ +  LV  Y  E+KW+H+ Y P+++EY+ ++ ++
Sbjct: 122 VHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKIS 181

Query: 367 SGYSMLTAASFLGM-DSVVTKEAFDWVSGKPKIIRASTIIGRLMDDIKSHKFEQERGHAA 425
                + + ++    ++       D +     I+  + II RL DD+ +  FE  RG   
Sbjct: 182 VASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVP 241

Query: 426 SAIECYMKEKEREGVSVTEQEVHEELYKKVGDAWKDINEECLMPTEVPRPLLMRVLNLSR 485
             I+CYMKE        +E+E  E +   + +AWKD+N         P  ++    N+ R
Sbjct: 242 KTIQCYMKETN-----ASEEEAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGR 296

Query: 486 VIDVIYKEGDGYTHVGQVMKDNIASVLIHPVA 517
           V   IY  GDG+        ++IA +L  P A
Sbjct: 297 VAQFIYLHGDGFGVQHSKTYEHIAGLLFEPYA 328
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 197 Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 207 Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Length = 311 Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Length = 300 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query518
d5easa2328 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1n1ba2328 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d1n1ba1207 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d5easa1197 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1ps1a_311 Pentalenene synthase {Streptomyces sp., UC5319 [Ta 100.0
d1di1a_300 Aristolochene synthase {Fungus (Penicillium roquef 99.96
d1kiya_354 Trichodiene synthase {Fusarium sporotrichioides [T 99.36
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=3.1e-99  Score=774.95  Aligned_cols=327  Identities=49%  Similarity=0.885  Sum_probs=311.3

Q ss_pred             ccHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhCCCCCCchhhhhhhHhHHHHhccccCcchhHHHHHHHHHhhhhhhh
Q 035568          186 HNKALLKLAKLDFNQVQSLYKIELSEISRWWKDLDFARKLPFARDRVVECYFWIVGVYFEPQYSLARKLLTKVISMTSII  265 (518)
Q Consensus       186 ~n~~ll~lAkldFn~~Q~~hq~El~~l~rWwk~~~l~~~l~faRdR~ve~yf~~~a~~feP~~s~~Rl~laK~~~l~~i~  265 (518)
                      +|++||||||||||+||++||+||+.++|||+++||.+++||||||++|||||++|++|||+||.+|++|||.+++++++
T Consensus         1 ~N~~lLelAKlDFN~~Q~~hq~El~~l~rWw~~~~l~~~l~~aRdr~ve~Yfw~~~~~fEP~~s~~R~~~aK~~~l~ti~   80 (328)
T d5easa2           1 KNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIV   80 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCcccCCchHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHhh
Confidence            49999999999999999999999999999999999988999999999999999999999999999999999999999999


Q ss_pred             hcccccCCCHHHHHHHHHHhhhcCccccccCChhHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHH
Q 035568          266 DDIYDVYGIPEELDLFTAAIDRWDVSCIDQLPEYMQTFYVALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDES  345 (518)
Q Consensus       266 DD~fD~~gt~eEl~~~t~ai~rWd~~~~~~lpe~mk~~f~al~~~~~ei~~~~~~~~~~~~~~~~k~~~~~~~~a~l~EA  345 (518)
                      ||+||+|||+||++.||+||+|||.++++.||+|||+||.++++++++++.++.++||++++++++++|++++++|++||
T Consensus        81 DD~yD~ygt~eEl~~ft~ai~rWd~~~~~~lp~ymk~~~~~l~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~~~l~EA  160 (328)
T d5easa2          81 DDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVES  160 (328)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHTCSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccCCCHHHHHHHHHHHhcCCcchhhhCCchHHHHHHHHHHHHHHHHHHHHHhcCeeeHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998999999999999999999999


Q ss_pred             hHhcCCCCCChHHHHhhhhcccchhHHHHHHHHhcCCCCchHHHhhccCchHHHHHHhhhhhhccCccchhhhhhcCCCc
Q 035568          346 KWFHNNYVPTMEEYMRVSLVTSGYSMLTAASFLGMDSVVTKEAFDWVSGKPKIIRASTIIGRLMDDIKSHKFEQERGHAA  425 (518)
Q Consensus       346 ~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~i~~~~~~i~RL~NDI~S~~kE~~~G~~~  425 (518)
                      +|+++||+||+||||+||.+|+|++++++++++++|. ++++.++|++++|+|+++++.|+||+|||+|+++|+++|+++
T Consensus       161 ~W~~~g~vPt~eEYl~~~~~s~~~~~l~~~~~~~~g~-~~~e~~~~~~~~p~l~~~~~~i~RL~NDi~s~~~E~~rG~~~  239 (328)
T d5easa2         161 TWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIA  239 (328)
T ss_dssp             HHHHHTCCCCHHHHHHHHTGGGCHHHHHHHHHHTCTT-CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred             HHHhCCCCCChHhhhcceeeeehHHHHHHHHHHhCCC-CcHHHHHhcccchHHHHHHHHHHHHHhhhHHHHHHhccCCCC
Confidence            9999999999999999999999999999999999998 577889999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhcccCCcccCHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhhhhhhcccC-CCCCCCChhH
Q 035568          426 SAIECYMKEKEREGVSVTEQEVHEELYKKVGDAWKDINEECLMPTEVPRPLLMRVLNLSRVIDVIYKEG-DGYTHVGQVM  504 (518)
Q Consensus       426 n~V~cym~e~~~~g~~vS~eeA~~~i~~~i~~~~k~ln~~~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~-Dg~t~~~~~~  504 (518)
                      |+|+|||+||   |  +|+|||+++++++|+++||+||+++++++++|++|+++++|+||+++++|++| ||||+|++.+
T Consensus       240 s~I~cym~e~---g--~t~EeA~~~i~~~ie~~wk~ln~e~l~~~~~~~~~~~~~~n~ar~~~~~Y~~~~D~yt~~~~~~  314 (328)
T d5easa2         240 TGIECCMRDY---G--ISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVL  314 (328)
T ss_dssp             CHHHHHHHHH---T--CCHHHHHHHHHHHHHHHHHHHHHHTSSSCSSCGGGTHHHHHHHHHHHHHTC-----------CC
T ss_pred             eeEEEEecCC---C--CCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCchHHH
Confidence            9999999999   9  99999999999999999999999999999999999999999999999999977 9999998789


Q ss_pred             HHHHHHhcccccCC
Q 035568          505 KDNIASVLIHPVAI  518 (518)
Q Consensus       505 k~~i~~ll~~pi~~  518 (518)
                      |++|++||++||||
T Consensus       315 k~~i~~ll~epi~~  328 (328)
T d5easa2         315 KPHIINLLVDSIKI  328 (328)
T ss_dssp             HHHHHHHHTCCCCC
T ss_pred             HHHHHHHhccCCcC
Confidence            99999999999996
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Back     information, alignment and structure
>d1kiya_ a.128.1.5 (A:) Trichodiene synthase {Fusarium sporotrichioides [TaxId: 5514]} Back     information, alignment and structure