Citrus Sinensis ID: 035582

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27

MYFPVALYYPINQDINLTSPTDIHRMISKRLQLLKQSLSETLARFHQFAGKLNDDNLSVDCKDKGIYFVESRVDSPLNEFLNQPDLFLINKLLRSEAGIRVAKIQVTTFECSGLIITFKNWAATACKNTEAAICPNNDVSYLFPQNNDATRRFVFDAKAIATLKAKATSSWVQNPTRAEAAPAVLCKSIIAAFKAKSSSLKPTLLTHLVNLRRKARPPLSEYSMGKIVWMANALCTDDEPELDSLVCLLREAIKKIDGDFMKSLQGDG

ccEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHcccccccccEEccccEEEEEccccEEEEEEEEccccccccccccHHHHHHHcccccccccEEEEEcEEEcccEEEEHHHHHHHHccccccccccccccccccccccccEEEEEEcHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccccccccEEEEEEEccccccccccccccEEccEEccEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHcccc

cccEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccEEEEccccEEEEEEEcccccHHHHccccccHHHHHHccccccccEEEEEEEEEcccHHHHHHHHHHHHHcccccccccccccHHHcccccccEEEEEEEcHHHHHHHHHHccHcccccccHHHHHHHHHHHHHHHHHcccccccccEEEEEEEcccccccccccccccccEEEEEcHHcccccccHHHHHHHHHHHHHHccHHHHHHHcccc

myfpvalyypinqdinltsptdIHRMISKRLQLLKQSLSETLARFHQFAgklnddnlsvdckdkgIYFVEsrvdsplneflnqpdlFLINKLLRSEAGIRVAKIQVTTFECSGLIITFKNWAATACknteaaicpnndvsylfpqnndatrRFVFDAKAIATLKAKAtsswvqnptraeaaPAVLCKSIIAAFKAkssslkptlLTHLVNLrrkarpplseysmGKIVWMANalctddepeLDSLVCLLREAIKKIDGDFMKSLQGDG

MYFPVALYYPINQDINLTSPTDIHRMISKRLQLLKQSLSETLARFHQFagklnddnlsvdCKDKGIYFVESRVDSPLNEFLNQPDLFLINKLLRSEAGIRVAKIQVTTFECSGLIITFKNWAATACKNTEAAICPNNDVSYLFPQNNDATRRFVFDAKAIATLKakatsswvqnptRAEAAPAVLCKSIIAAFkakssslkptllthlvnlrrkarpplseysmGKIVWMANALCTDDEPELDSLVCLLREAIKKIDGDFMKSLQGDG

MYFPVALYYPINQDINLTSPTDIHRMIskrlqllkqslsETLARFHQFAGKLNDDNLSVDCKDKGIYFVESRVDSPLNEFLNQPDLFLINKLLRSEAGIRVAKIQVTTFECSGLIITFKNWAATACKNTEAAICPNNDVSYLFPQNNDATRRFVFDakaiatlkakatSSWVQNPTRAEAAPAVLCksiiaafkakssslkPTLLTHLVNLRRKARPPLSEYSMGKIVWMANALCTDDEPELDSLVCLLREAIKKIDGDFMKSLQGDG

*YFPVALYYPINQDINLTSPTDIHRMISKRLQLLKQSLSETLARFHQFAGKLNDDNLSVDCKDKGIYFVESRVDSPLNEFLNQPDLFLINKLLRSEAGIRVAKIQVTTFECSGLIITFKNWAATACKNTEAAICPNNDVSYLFPQNNDATRRFVFDAKAIATLKAKATSSWVQNPTRAEAAPAVLCKSIIAAFKAKSSSLKPTLLTHLVNLRRKARPPLSEYSMGKIVWMANALCTDDEPELDSLVCLLREAIKKIDGD*********

MYFPVALYYPINQDINLTSPTDIHRMISKRLQLLKQSLSETLARFHQFAGKLNDDNLSVDCKDKGIYFVESRVDSPLNEFLNQPDLFLINKLLRSEAGIRVAKIQVTTFECSGLIITFKNWAATACKNTEAAICPNNDVSYLFPQNNDATRRFVFDAKAIATLK********QNPTRAEAAPAVLCKSIIAAFKAKSSSLKPTLLTHLVNLRRKARPPLSEYSMGKIVWMANALCTDDEPELDSLVCLLREAIKKIDGDFMKSLQ***

MYFPVALYYPINQDINLTSPTDIHRMISKRLQLLKQSLSETLARFHQFAGKLNDDNLSVDCKDKGIYFVESRVDSPLNEFLNQPDLFLINKLLRSEAGIRVAKIQVTTFECSGLIITFKNWAATACKNTEAAICPNNDVSYLFPQNNDATRRFVFDAKAIATL************TRAEAAPAVLCKSIIAAFKAKSSSLKPTLLTHLVNLRRKARPPLSEYSMGKIVWMANALCTDDEPELDSLVCLLREAIKKIDGDFMKSLQGDG

MYFPVALYYPINQDINLTSP*****MISKRLQLLKQSLSETLARFHQFAGKLNDDNLSVDCKDKGIYFVESRVDSPLNEFLNQPDLFLINKLLRSEAGIRVAKIQVTTFECSGLIITFKNWAATACKNTEAAICPNNDVSYLFPQNNDATRRFVFDAKAIATLKAKATSSWVQNPTRAEAAPAVLCKSIIAAFKAKSSSLKPTLLTHLVNLRRKARPPLSEYSMGKIVWMANALCTDDEPELDSLVCLLREAIKKIDGDFMKSLQ***

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		268	2.2.26 [Sep-21-2011]
Q70PR7		421	Vinorine synthase OS=Rauv	N/A	no	0.944	0.600	0.302	1e-23
Q94FT4		474	Salutaridinol 7-O-acetylt	N/A	no	0.921	0.521	0.276	3e-19
Q9ZTK5		439	Deacetylvindoline O-acety	N/A	no	0.738	0.451	0.275	2e-13
Q9FI40		443	BAHD acyltransferase At5g	no	no	0.75	0.453	0.297	2e-11
Q94CD1		457	Omega-hydroxypalmitate O-	no	no	0.843	0.494	0.241	9e-11
Q8GT20		460	Benzyl alcohol O-benzoylt	N/A	no	0.332	0.193	0.34	5e-07
Q8GSM7		435	Shikimate O-hydroxycinnam	N/A	no	0.309	0.190	0.293	3e-05
Q9SRQ2		454	(Z)-3-hexen-1-ol acetyltr	no	no	0.332	0.196	0.303	5e-05
Q5H873		453	13-hydroxylupanine O-tigl	N/A	no	0.332	0.196	0.29	0.0001
Q8GT21		456	Benzyl alcohol O-benzoylt	N/A	no	0.854	0.502	0.210	0.0002

>sp\|Q70PR7\|VINSY_RAUSE Vinorine synthase OS=Rauvolfia serpentina GN=ACT PE=1 SV=2	Back alignment and function desciption

 Score =  110 bits (274), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 146/304 (48%), Gaps = 51/304 (16%)

Query: 2   YFPVALYYPINQDINLTSPTDIHRMISKRLQLLKQSLSETLARFHQFAGKLNDDNLSVDC 61
           + P  L+YP   D NL          ++  Q LKQSLS+ L  F+  AG++N  N SVDC
Sbjct: 39  HIPFILFYPNPLDSNLDP--------AQTSQHLKQSLSKVLTHFYPLAGRINV-NSSVDC 89

Query: 62  KDKGIYFVESRVDSPLNEFL-NQPDLFLINKLLRSEA--GIRVA-------KIQVTTFEC 111
            D G+ FVE+RV + L++ + N  +L  +++ L S A  G ++         ++++ FEC
Sbjct: 90  NDSGVPFVEARVQAQLSQAIQNVVELEKLDQYLPSAAYPGGKIEVNEDVPLAVKISFFEC 149

Query: 112 SGLII---------------TFKN-WAATACKNTEAAICPNNDVS-------------YL 142
            G  I               TF N W AT C+     + PN D++              L
Sbjct: 150 GGTAIGVNLSHKIADVLSLATFLNAWTAT-CRGETEIVLPNFDLAARHFPPVDNTPSPEL 208

Query: 143 FPQNNDATRRFVFDAKAIATLKAKATS-SWVQNPTRAEAAPAVLCKSIIAAFKAKSSSLK 201
            P  N   +RFVFD + I  L+A+A+S S  +N +R +   A + K +I   +AK  +  
Sbjct: 209 VPDENVVMKRFVFDKEKIGALRAQASSASEEKNFSRVQLVVAYIWKHVIDVTRAKYGAKN 268

Query: 202 PTLLTHLVNLRRKARPPLSEYSMGKI-VWMANALCTDDEPELDSLVCLLREAIKKIDGDF 260
             ++   VNLR +  PPL  Y+MG I   +  A+  + + +   L+  LR +++K + D 
Sbjct: 269 KFVVVQAVNLRSRMNPPLPHYAMGNIATLLFAAVDAEWDKDFPDLIGPLRTSLEKTEDDH 328

Query: 261 MKSL 264
              L
Sbjct: 329 NHEL 332

Acetyltransferase that catalyzes the formation of vinorine, a precursor of the antiarrhythmic monoterpenoid indole alkaloid ajmaline. Acts on gardneral, but not on polyneuridine aldehyde or N-methylgardneral.
Rauvolfia serpentina (taxid: 4060)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 1EC: 6EC: 0

>sp\|Q94FT4\|SALAT_PAPSO Salutaridinol 7-O-acetyltransferase OS=Papaver somniferum GN=SALAT PE=1 SV=1	Back alignment and function description

>sp\|Q9ZTK5\|DAT_CATRO Deacetylvindoline O-acetyltransferase OS=Catharanthus roseus GN=DAT PE=1 SV=1	Back alignment and function description

>sp\|Q9FI40\|BAHD1_ARATH BAHD acyltransferase At5g47980 OS=Arabidopsis thaliana GN=BAHD1 PE=2 SV=1	Back alignment and function description

>sp\|Q94CD1\|HHT1_ARATH Omega-hydroxypalmitate O-feruloyl transferase OS=Arabidopsis thaliana GN=HHT1 PE=1 SV=1	Back alignment and function description

>sp\|Q8GT20\|BEBT_TOBAC Benzyl alcohol O-benzoyltransferase OS=Nicotiana tabacum GN=HSR201 PE=1 SV=1	Back alignment and function description

>sp\|Q8GSM7\|HST_TOBAC Shikimate O-hydroxycinnamoyltransferase OS=Nicotiana tabacum GN=HST PE=1 SV=1	Back alignment and function description

>sp\|Q9SRQ2\|CHAT_ARATH (Z)-3-hexen-1-ol acetyltransferase OS=Arabidopsis thaliana GN=CHAT PE=1 SV=1	Back alignment and function description

>sp\|Q5H873\|HLTT_LUPAL 13-hydroxylupanine O-tigloyltransferase OS=Lupinus albus GN=HMT/HLT PE=1 SV=1	Back alignment and function description

>sp\|Q8GT21\|BEBT_CLABR Benzyl alcohol O-benzoyltransferase OS=Clarkia breweri PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		268
224061883		449	predicted protein [Populus trichocarpa]	0.970	0.579	0.433	6e-52
255578621		460	Anthranilate N-benzoyltransferase protei	0.985	0.573	0.420	9e-46
255566100		468	3'-N-debenzoyl-2'-deoxytaxol N-benzoyltr	0.958	0.549	0.396	3e-45
224086030		435	predicted protein [Populus trichocarpa]	0.910	0.560	0.398	3e-44
255578623		443	Salutaridinol 7-O-acetyltransferase, put	0.936	0.566	0.376	5e-44
255584551		471	3'-N-debenzoyl-2'-deoxytaxol N-benzoyltr	0.973	0.554	0.387	7e-44
255539124		440	Anthranilate N-benzoyltransferase protei	0.944	0.575	0.381	6e-40
255544554		386	transferase, putative [Ricinus communis]	0.951	0.660	0.404	2e-39
356536997		466	PREDICTED: vinorine synthase-like [Glyci	0.970	0.557	0.335	3e-39
255539188		286	salutaridinol 7-O-acetyltransferase, put	0.835	0.783	0.387	6e-36

>gi\|224061883\|ref\|XP_002300646.1\| predicted protein [Populus trichocarpa] gi\|222842372\|gb\|EEE79919.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  210 bits (534), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 133/307 (43%), Positives = 176/307 (57%), Gaps = 47/307 (15%)

Query: 2   YFPVALYYPINQDINLTSPTDIHRMISKRLQLLKQSLSETLARFHQFAGKLNDDNLSVDC 61
           Y P+ LYYP+N D +  S  D+     KRL +LK+SLSETL  F+  AGK+ D+ LS+DC
Sbjct: 37  YAPLLLYYPMN-DNSGASNLDV----PKRLGVLKKSLSETLTHFYPLAGKIKDE-LSIDC 90

Query: 62  KDKGIYFVESRVDSPLNEFLNQPDLFLINKLLRSE----AGIRVAKIQVTTFECSGLII- 116
            D+G Y+VE++V+  L+EFL QPDL L+N+    E    A   VA  QV  FEC G+ I 
Sbjct: 91  NDEGAYYVEAQVNCHLSEFLRQPDLLLVNQFFPCELLPKAVTHVANFQVNVFECGGIAIG 150

Query: 117 --------------TF-KNWAATACKNTEAAICPNNDVSYLFPQN--------------- 146
                         TF K W+ATA  + EA I P    S LFP N               
Sbjct: 151 ICISHLILDGAALSTFLKAWSATAKGSREAIIYPEFIPSSLFPANDLWLRDSAVVMFGSL 210

Query: 147 ----NDATRRFVFDAKAIATLKAKATSSWVQNPTRAEAAPAVLCKSIIAAFKA-KSSSLK 201
               N  T+RFVFDA +I+ L+A+A S  V+ PTR E   + L K I+AA +  + S  +
Sbjct: 211 FKKGNGVTKRFVFDASSISILRAQAASLGVKCPTRVEVVSSFLWKCIMAASEEWRGSQRR 270

Query: 202 PTLLTHLVNLRRKARPPLSEYSMGKIVWMANALCTD-DEPELDSLVCLLREAIKKIDGDF 260
           P+LLTHLVNLRRK  P L E SMG  +W+A A C +    EL+ LV  +R+AI KID DF
Sbjct: 271 PSLLTHLVNLRRKMEPKLGENSMGNFLWLAAAKCMNKSRVELNDLVGEVRKAISKIDADF 330

Query: 261 MKSLQGD 267
           ++ ++GD
Sbjct: 331 VEQIKGD 337

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255578621\|ref\|XP_002530172.1\| Anthranilate N-benzoyltransferase protein, putative [Ricinus communis] gi\|223530333\|gb\|EEF32227.1\| Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|255566100\|ref\|XP_002524038.1\| 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative [Ricinus communis] gi\|223536765\|gb\|EEF38406.1\| 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224086030\|ref\|XP_002307785.1\| predicted protein [Populus trichocarpa] gi\|222857234\|gb\|EEE94781.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255578623\|ref\|XP_002530173.1\| Salutaridinol 7-O-acetyltransferase, putative [Ricinus communis] gi\|223530334\|gb\|EEF32228.1\| Salutaridinol 7-O-acetyltransferase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|255584551\|ref\|XP_002533002.1\| 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative [Ricinus communis] gi\|223527213\|gb\|EEF29377.1\| 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|255539124\|ref\|XP_002510627.1\| Anthranilate N-benzoyltransferase protein, putative [Ricinus communis] gi\|223551328\|gb\|EEF52814.1\| Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|255544554\|ref\|XP_002513338.1\| transferase, putative [Ricinus communis] gi\|223547246\|gb\|EEF48741.1\| transferase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356536997\|ref\|XP_003537018.1\| PREDICTED: vinorine synthase-like [Glycine max]	Back alignment and taxonomy information

>gi\|255539188\|ref\|XP_002510659.1\| salutaridinol 7-O-acetyltransferase, putative [Ricinus communis] gi\|223551360\|gb\|EEF52846.1\| salutaridinol 7-O-acetyltransferase, putative [Ricinus communis]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		268
TAIR\|locus:2092090		442	AT3G26040 [Arabidopsis thalian	0.391	0.237	0.305	6.3e-16
TAIR\|locus:2024036		435	AT1G24430 [Arabidopsis thalian	0.458	0.282	0.283	1.8e-10
TAIR\|locus:2024061		436	AT1G24420 [Arabidopsis thalian	0.283	0.174	0.380	7.1e-09
TAIR\|locus:2102936		443	AT3G30280 [Arabidopsis thalian	0.279	0.169	0.333	4.2e-08
TAIR\|locus:2130065		446	AT4G15390 [Arabidopsis thalian	0.194	0.116	0.436	1.2e-07
TAIR\|locus:2152783		426	AT5G47950 [Arabidopsis thalian	0.279	0.176	0.341	1.3e-07
TAIR\|locus:2162976		457	RWP1 "REDUCED LEVELS OF WALL-B	0.287	0.168	0.272	2.3e-05
UNIPROTKB\|A0PDV5		430	cbhct1 "Hydroxycinnamoyl trans	0.291	0.181	0.356	0.00022
TAIR\|locus:2130075		435	BIA1 "BRASSINOSTEROID INACTIVA	0.149	0.091	0.452	0.00022
TAIR\|locus:2028626		444	AT1G31490 [Arabidopsis thalian	0.287	0.173	0.372	0.00039

TAIR\|locus:2092090 AT3G26040 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 136 (52.9 bits), Expect = 6.3e-16, Sum P(2) = 6.3e-16
 Identities = 37/121 (30%), Positives = 60/121 (49%)

Query:     1 MYFPVALYYPINQDINLTSPTDIHRMIXXXXXXXXXXXXETLARFHQFAGKLNDDNLSVD 60
             ++ P+  +Y  N  I    PT+  +M+            ETL  F+  AG+L   N+S+D
Sbjct:    36 IFGPMVFFYSANNSIK---PTEQLQMLKKSLS-------ETLTHFYPLAGRLKG-NISID 84

Query:    61 CKDKGIYFVESRVDSPLNEFLNQPDLFLINKLLRS-----EAGIRVAKIQVTTFECSGLI 115
             C D G  F+E+RV+SPL+  L +P    + +L+ +     E   R+   Q + FEC  + 
Sbjct:    85 CNDSGADFLEARVNSPLSNLLLEPSSDSLQQLIPTSVDSIETRTRLLLAQASFFECGSMS 144

Query:   116 I 116
             I
Sbjct:   145 I 145

GO:0005737 "cytoplasm" evidence=ISM

GO:0016740 "transferase activity" evidence=ISS

GO:0016747 "transferase activity, transferring acyl groups other than amino-acyl groups" evidence=IEA

TAIR\|locus:2024036 AT1G24430 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2024061 AT1G24420 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2102936 AT3G30280 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2130065 AT4G15390 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2152783 AT5G47950 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2162976 RWP1 "REDUCED LEVELS OF WALL-BOUND PHENOLICS 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|A0PDV5 cbhct1 "Hydroxycinnamoyl transferase" [Solenostemon scutellarioides (taxid:4142)]	Back alignment and assigned GO terms

TAIR\|locus:2130075 BIA1 "BRASSINOSTEROID INACTIVATOR1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2028626 AT1G31490 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.3.1	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		268
PLN00140		444	PLN00140, PLN00140, alcohol acetyltransferase fami	4e-57
pfam02458		432	pfam02458, Transferase, Transferase family	2e-30
PLN02481		436	PLN02481, PLN02481, Omega-hydroxypalmitate O-ferul	5e-16
PLN02663		431	PLN02663, PLN02663, hydroxycinnamoyl-CoA:shikimate	8e-05
PLN03157		447	PLN03157, PLN03157, spermidine hydroxycinnamoyl tr	0.004

>gnl\|CDD\|165708 PLN00140, PLN00140, alcohol acetyltransferase family protein; Provisional	Back alignment and domain information

 Score =  188 bits (479), Expect = 4e-57
 Identities = 108/313 (34%), Positives = 157/313 (50%), Gaps = 57/313 (18%)

Query: 2   YFPVALYYPINQDINL-TSPTDIHRMISKRLQLLKQSLSETLARFHQFAGKLNDDNLSVD 60
           Y P+  +YP N + N       I          LK+SLSETL+ F+ F+G++ D NL +D
Sbjct: 37  YIPMIFFYPTNNNQNFKGLQISIQ---------LKRSLSETLSTFYPFSGRVKD-NLIID 86

Query: 61  CKDKGIYFVESRVDSPLNEFLNQPDLFLINKLL--------RSEAGIRVAKIQVTTFECS 112
             ++G+ F E+RV   L++FL  P L L+NK L             I    IQV TF+C 
Sbjct: 87  NYEEGVPFFETRVKGSLSDFLKHPQLELLNKFLPCQPFSYESDPEAIPQVAIQVNTFDCG 146

Query: 113 GLIITF----------------KNWAATACKNTEAAICPNNDV-SYLFP----------- 144
           G+ +                   +WAA    +    I P+    S  FP           
Sbjct: 147 GIALGLCFSHKIIDAATASAFLDSWAANTRGHYSEVINPDLFEASSFFPPLNSFPVQFLL 206

Query: 145 --------QNNDATRRFVFDAKAIATLKAKATSSWVQNPTRAEAAPAVLCKSIIAAFKAK 196
                   + N  T+RFVFDAKAIATL+AKA S  V NP+R E     + K   AA ++ 
Sbjct: 207 LMEENWFFKENYITKRFVFDAKAIATLRAKAKSKRVPNPSRIETLSCFIWKCCTAASRSI 266

Query: 197 SSSLKPTLLTHLVNLRRKARPPLSEYSMGKIVWMANALC--TDDEPELDSLVCLLREAIK 254
           S++ +P++  H VN+R++ +PP+S YS+G + W A A     D + EL+ LV L RE+I 
Sbjct: 267 SAAPRPSISVHAVNIRQRTKPPMSRYSIGNLFWWALAAADPADTKIELNELVSLTRESIA 326

Query: 255 KIDGDFMKSLQGD 267
             + D++KSLQG+
Sbjct: 327 NYNSDYLKSLQGE 339

Length = 444

>gnl\|CDD\|217048 pfam02458, Transferase, Transferase family	Back alignment and domain information

>gnl\|CDD\|215266 PLN02481, PLN02481, Omega-hydroxypalmitate O-feruloyl transferase	Back alignment and domain information

>gnl\|CDD\|166304 PLN02663, PLN02663, hydroxycinnamoyl-CoA:shikimate/quinate hydroxycinnamoyltransferase	Back alignment and domain information

>gnl\|CDD\|178702 PLN03157, PLN03157, spermidine hydroxycinnamoyl transferase; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		268
PLN00140		444	alcohol acetyltransferase family protein; Provisio	100.0
PLN03157		447	spermidine hydroxycinnamoyl transferase; Provision	100.0
PLN02481		436	Omega-hydroxypalmitate O-feruloyl transferase	100.0
PLN02663		431	hydroxycinnamoyl-CoA:shikimate/quinate hydroxycinn	100.0
PF02458		432	Transferase: Transferase family; InterPro: IPR0034	100.0
PRK09294		416	acyltransferase PapA5; Provisional	98.05
PF07247		480	AATase: Alcohol acetyltransferase; InterPro: IPR01	95.45
TIGR02946		446	acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT. This b	92.69
COG4908		439	Uncharacterized protein containing a NRPS condensa	91.08
PF07428		413	Tri3: 15-O-acetyltransferase Tri3; InterPro: IPR00	80.77

>PLN00140 alcohol acetyltransferase family protein; Provisional	Back alignment and domain information

Probab=100.00  E-value=7.3e-55  Score=408.66  Aligned_cols=258  Identities=41%  Similarity=0.689  Sum_probs=218.1

Q ss_pred             CcccEEEEecCCCCCCCCCCCccccchhhhHHHHHHHHHHHhhhcccCCceecCCCeeEEecCCceEEEEEEecCChhhh
Q 035582            1 MYFPVALYYPINQDINLTSPTDIHRMISKRLQLLKQSLSETLARFHQFAGKLNDDNLSVDCKDKGIYFVESRVDSPLNEF   80 (268)
Q Consensus         1 ~yi~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~L~~sLs~~L~~~~~LaGrl~~g~~~i~~~~~Gv~f~~a~~~~~l~~l   80 (268)
                      .|++.+|||+.+...   +.+  ...++++   ||+||+++|++||||||||+ .+++|+|||+||.|+||+++++++|+
T Consensus        36 ~~~~~~~fY~~~~~~---~~~--~~~~~~~---Lk~sLs~~L~~fyplAGRl~-~~~~i~cn~~Gv~fveA~~~~~l~d~  106 (444)
T PLN00140         36 TYIPMIFFYPTNNNQ---NFK--GLQISIQ---LKRSLSETLSTFYPFSGRVK-DNLIIDNYEEGVPFFETRVKGSLSDF  106 (444)
T ss_pred             cccceEEEeeCCCcc---ccc--chhHHHH---HHHHHHHHHhhhhccCcccc-CCceeEccCCCceEEEEEecCcHHHh
Confidence            589999999875432   210  1467899   99999999999999999999 68999999999999999999999999


Q ss_pred             cCCCChHHhhcccccc-------CCCce-eEEEEeeeecCceeee----------------HHHHHHHHccCCCCCCCCC
Q 035582           81 LNQPDLFLINKLLRSE-------AGIRV-AKIQVTTFECSGLIIT----------------FKNWAATACKNTEAAICPN  136 (268)
Q Consensus        81 ~~~~~~~~~~~l~p~~-------~~~~P-l~vQvt~f~cGG~~lg----------------l~~Wa~~~rg~~~~~~~P~  136 (268)
                      ...++...++.|+|..       ..+.| +.||||+|+|||++||                +++||++|||...+...|.
T Consensus       107 l~~~~~~~~~~l~p~~~~~~~~~~~~~Pll~vQvT~F~cGG~~lG~~~~H~v~Dg~s~~~Fl~~WA~~~rg~~~~~~~P~  186 (444)
T PLN00140        107 LKHPQLELLNKFLPCQPFSYESDPEAIPQVAIQVNTFDCGGIALGLCFSHKIIDAATASAFLDSWAANTRGHYSEVINPD  186 (444)
T ss_pred             cCCCCHHHHHhhCCCCcccccCCccCCceEEEEEEEeccCcEEEEeeeceEcccHHHHHHHHHHHHHHhcCCCCCCCCcc
Confidence            7766555667788753       13479 9999999999999999                9999999999754567788


Q ss_pred             CCcc-cccCC-------------------CCccEEEEEECHHHHHHHHHHhhcCCCCCCChhhhHHHHHHHHHHHHhcCC
Q 035582          137 NDVS-YLFPQ-------------------NNDATRRFVFDAKAIATLKAKATSSWVQNPTRAEAAPAVLCKSIIAAFKAK  196 (268)
Q Consensus       137 ~dr~-~~~p~-------------------~~~~~~~f~fs~~~i~~Lk~~a~~~~~~~~St~d~l~A~lW~~~~rar~~~  196 (268)
                      +||. ..+|+                   .++..++|+|++++|++||+++......++|+||+++||+|+|++||++..
T Consensus       187 ~dr~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~~f~fs~~~I~~LK~~~~~~~~~~~S~~e~vsA~iWr~~~rA~~~~  266 (444)
T PLN00140        187 LFEASSFFPPLNSFPVQFLLLMEENWFFKENYITKRFVFDAKAIATLRAKAKSKRVPNPSRIETLSCFIWKCCTAASRSI  266 (444)
T ss_pred             cccccccCCCCCcccccccccccccccccCceEEEEEEECHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhhhc
Confidence            8885 22222                   146788999999999999999976544689999999999999999996542


Q ss_pred             CCCCcceEEEEEecCcCCCCCCCCcCccccceecceeeecCCC--ccHHHHHHHHHHHHHhchHHHHhhhccC
Q 035582          197 SSSLKPTLLTHLVNLRRKARPPLSEYSMGKIVWMANALCTDDE--PELDSLVCLLREAIKKIDGDFMKSLQGD  267 (268)
Q Consensus       197 ~~~~~~~~l~~~vd~R~r~~p~lp~~y~GN~v~~~~~~~~~~e--~~l~~~A~~Ir~~i~~~~~~~~~s~~~~  267 (268)
                      ...++++.+.++||+|+|++||+|++||||++..+.+.++++|  .+|.++|.+||++++++|++|+|+++++
T Consensus       267 ~~~~~~~~~~~~vn~R~Rl~PpLP~~y~GN~i~~~~~~~~~~~~~~~l~~~a~~Ir~~i~~~~~e~~~s~~~~  339 (444)
T PLN00140        267 SAAPRPSISVHAVNIRQRTKPPMSRYSIGNLFWWALAAADPADTKIELNELVSLTRESIANYNSDYLKSLQGE  339 (444)
T ss_pred             cCCCCceEEEEEEeccccCCCCCCcccccchhhhheecccccccccchHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            2225789999999999999999999999999999988887776  7899999999999999999999998753

>PLN03157 spermidine hydroxycinnamoyl transferase; Provisional	Back alignment and domain information

>PLN02481 Omega-hydroxypalmitate O-feruloyl transferase	Back alignment and domain information

>PLN02663 hydroxycinnamoyl-CoA:shikimate/quinate hydroxycinnamoyltransferase	Back alignment and domain information

>PF02458 Transferase: Transferase family; InterPro: IPR003480 This family includes a number of transferase enzymes	Back alignment and domain information

>PRK09294 acyltransferase PapA5; Provisional	Back alignment and domain information

>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2	Back alignment and domain information

>TIGR02946 acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT	Back alignment and domain information

>COG4908 Uncharacterized protein containing a NRPS condensation (elongation) domain [General function prediction only]	Back alignment and domain information

>PF07428 Tri3: 15-O-acetyltransferase Tri3; InterPro: IPR009992 This family represents a conserved region approximately 400 residues long within 15-O-acetyltransferase (Tri3), which seems to be restricted to ascomycete fungi	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		268
2bgh_A		421	Crystal Structure Of Vinorine Synthase Length = 421		2e-13

>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase Length = 421

Back alignment and structure

Iteration: 1

Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 81/305 (26%), Positives = 125/305 (40%), Gaps = 53/305 (17%) Query: 2 YFPVALYYPINQDINLTSPTDIHRMIXXXXXXXXXXXXETLARFHQFAGKLNDDNLSVDC 61 + P L+YP D NL P + + + L F+ AG++N N SVDC Sbjct: 39 HIPFILFYPNPLDSNL-DPAQTSQHLKQSLS-------KVLTHFYPLAGRINV-NSSVDC 89 Query: 62 KDKGIYFVESRVDSPLNEFL-NQPDLFLINKLLRSEA--GIRVA-------KIQVTTFEC 111 D G+ FVE+RV + L++ + N +L +++ L S A G ++ ++++ FEC Sbjct: 90 NDSGVPFVEARVQAQLSQAIQNVVELEKLDQYLPSAAYPGGKIEVNEDVPLAVKISFFEC 149 Query: 112 SGLII---------------TFKN-WAATACKNTEAAICPNNDVSY-------------L 142 G I TF N W AT C+ + PN D++ L Sbjct: 150 GGTAIGVNLSHKIADVLSLATFLNAWTAT-CRGETEIVLPNFDLAARHFPPVDNTPSPEL 208 Query: 143 FPQNNDATRRFVFDXXXXXXXXXXXXS-SWVQNPTRAEAAPAVLCXXXXXXXXXXXXXXX 201 P N +RFVFD S S +N +R + A + Sbjct: 209 VPDENVVMKRFVFDKEKIGALRAQASSASEEKNFSRVQLVVAYIWKHVIDVTRAKYGAKN 268 Query: 202 PTLLTHLVNLRRKARPPLSEYSMGKIVWMANALCTDDEPELD--SLVCLLREAIKKIDGD 259 ++ VNLR + PPL Y+MG I + A D E + D L+ LR +++K + D Sbjct: 269 KFVVVQAVNLRSRMNPPLPHYAMGNIATLLFA-AVDAEWDKDFPDLIGPLRTSLEKTEDD 327 Query: 260 FMKSL 264 L Sbjct: 328 HNHEL 332

PyMOL of 2bgh

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		268
2bgh_A		421	Vinorine synthase; VS, BAHD, acetyltransferase, au	4e-47
4g22_A		439	Hydroxycinnamoyl-COA shikimate/quinate hydroxycinn	4e-44
2e1v_A		454	Acyl transferase; BAHD superfamily, seleno-methion	2e-32
2xr7_A		453	Malonyltransferase; xenobiotics, naphthols; HET: M	1e-31
2rkv_A		451	Trichothecene 3-O-acetyltransferase; BAHD superfam	4e-25
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>2bgh_A Vinorine synthase; VS, BAHD, acetyltransferase, auto-rickshaw, transferase; 2.6A {Rauvolfia serpentina} Length = 421	Back alignment and structure

 Score =  161 bits (408), Expect = 4e-47
 Identities = 84/305 (27%), Positives = 136/305 (44%), Gaps = 51/305 (16%)

Query: 1   MYFPVALYYPINQDINLTSPTDIHRMISKRLQLLKQSLSETLARFHQFAGKLNDDNLSVD 60
            + P  L+YP        +P D +   ++  Q LKQSLS+ L  F+  AG++N  N SVD
Sbjct: 38  CHIPFILFYP--------NPLDSNLDPAQTSQHLKQSLSKVLTHFYPLAGRINV-NSSVD 88

Query: 61  CKDKGIYFVESRVDSPLNEFL-NQPDLFLINKLL---------RSEAGIRVAKIQVTTFE 110
           C D G+ FVE+RV + L++ + N  +L  +++ L                   ++++ FE
Sbjct: 89  CNDSGVPFVEARVQAQLSQAIQNVVELEKLDQYLPSAAYPGGKIEVNEDVPLAVKISFFE 148

Query: 111 CSGLIIT----------------FKNWAATACKNTEAAICPNNDVS-------------Y 141
           C G  I                    W A  C+     + PN D++              
Sbjct: 149 CGGTAIGVNLSHKIADVLSLATFLNAWTA-TCRGETEIVLPNFDLAARHFPPVDNTPSPE 207

Query: 142 LFPQNNDATRRFVFDAKAIATLKAKATS-SWVQNPTRAEAAPAVLCKSIIAAFKAKSSSL 200
           L P  N   +RFVFD + I  L+A+A+S S  +N +R +   A + K +I   +AK  + 
Sbjct: 208 LVPDENVVMKRFVFDKEKIGALRAQASSASEEKNFSRVQLVVAYIWKHVIDVTRAKYGAK 267

Query: 201 KPTLLTHLVNLRRKARPPLSEYSMGKIVWMANALCTD-DEPELDSLVCLLREAIKKIDGD 259
              ++   VNLR +  PPL  Y+MG I  +  A      + +   L+  LR +++K + D
Sbjct: 268 NKFVVVQAVNLRSRMNPPLPHYAMGNIATLLFAAVDAEWDKDFPDLIGPLRTSLEKTEDD 327

Query: 260 FMKSL 264
               L
Sbjct: 328 HNHEL 332

PyMOL of 2bgh

>4g22_A Hydroxycinnamoyl-COA shikimate/quinate hydroxycinnamoyltransferase; BAHD superfamily; 1.70A {Coffea canephora} PDB: 4g2m_A 4g0b_A Length = 439	Back alignment and structure

>2e1v_A Acyl transferase; BAHD superfamily, seleno-methionine derivative, dendranthema morifolium, DMAT; 1.80A {Chrysanthemum x morifolium} PDB: 2e1u_A 2e1t_A Length = 454	Back alignment and structure

>2xr7_A Malonyltransferase; xenobiotics, naphthols; HET: MLC; 3.10A {Nicotiana tabacum} Length = 453	Back alignment and structure

>2rkv_A Trichothecene 3-O-acetyltransferase; BAHD superfamily, deoxyniv T-2, acetyl COA, fusarium; HET: COA MPO ZBA; 1.60A {Gibberella zeae} PDB: 3b2s_A* 3b30_A* 2rkt_A* 2zba_A* Length = 451	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		268
4g22_A		439	Hydroxycinnamoyl-COA shikimate/quinate hydroxycinn	100.0
2bgh_A		421	Vinorine synthase; VS, BAHD, acetyltransferase, au	100.0
2xr7_A		453	Malonyltransferase; xenobiotics, naphthols; HET: M	100.0
2e1v_A		454	Acyl transferase; BAHD superfamily, seleno-methion	100.0
2rkv_A		451	Trichothecene 3-O-acetyltransferase; BAHD superfam	100.0
3fot_A		519	15-O-acetyltransferase; fusarium head blight, tric	94.46
1q9j_A		422	PAPA5, polyketide synthase associated protein 5; c	93.84
2jgp_A		520	Tyrocidine synthetase 3; multifunctional enzyme, a	92.37
2xhg_A		466	Tyrocidine synthetase A; isomerase, nonribosomal p	91.98
2vsq_A		1304	Surfactin synthetase subunit 3; ligase, peptidyl c	90.72
1l5a_A		436	Amide synthase, VIBH; nonribosomal peptide synthet	90.55

>4g22_A Hydroxycinnamoyl-COA shikimate/quinate hydroxycinnamoyltransferase; BAHD superfamily; 1.70A {Coffea canephora} PDB: 4g2m_A 4g0b_A	Back alignment and structure

Probab=100.00  E-value=8.7e-55  Score=406.53  Aligned_cols=251  Identities=21%  Similarity=0.341  Sum_probs=216.2

Q ss_pred             CcccEEEEecCCCCCCCCCCCccccchhhhHHHHHHHHHHHhhhcccCCceecC---CCeeEEecCCceEEEEEEecCCh
Q 035582            1 MYFPVALYYPINQDINLTSPTDIHRMISKRLQLLKQSLSETLARFHQFAGKLND---DNLSVDCKDKGIYFVESRVDSPL   77 (268)
Q Consensus         1 ~yi~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~L~~sLs~~L~~~~~LaGrl~~---g~~~i~~~~~Gv~f~~a~~~~~l   77 (268)
                      +|++.+|||+.++..   +     ...+++   ||+||+++|++||||||||+.   |+++|+||++||.|+||++|+++
T Consensus        39 ~~~~~~~~y~~~~~~---~-----~~~~~~---Lk~sLs~~L~~f~plAGRl~~~~~g~~~i~c~~~Gv~fv~A~~d~~l  107 (439)
T 4g22_A           39 FHTPSVYFYRPTGSS---N-----FFDAKV---LKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVV  107 (439)
T ss_dssp             TCCCEEEEECCCSCT---T-----TTCHHH---HHHHHHHHTTTTGGGGCEEEECTTSCEEEECCCCCEEEEEEEESSCG
T ss_pred             cceeeEEEEcCCCCc---c-----ccHHHH---HHHHHHHHHhhccccceeeeeCCCCCEEEEECCCCCEEEEEEcCCcH
Confidence            589999999865432   2     456899   999999999999999999984   89999999999999999999999


Q ss_pred             hhhcCCCChHHhhcccccc-----CCCce-eEEEEeeeecCceeee----------------HHHHHHHHccCCCCCCCC
Q 035582           78 NEFLNQPDLFLINKLLRSE-----AGIRV-AKIQVTTFECSGLIIT----------------FKNWAATACKNTEAAICP  135 (268)
Q Consensus        78 ~~l~~~~~~~~~~~l~p~~-----~~~~P-l~vQvt~f~cGG~~lg----------------l~~Wa~~~rg~~~~~~~P  135 (268)
                      +|+.+..+...+++|+|..     ..+.| +.||||+|+|||++||                +++||++|||... ..+|
T Consensus       108 ~~l~~~~p~~~~~~l~p~~~~~~~~~~~pll~vQvT~f~cGG~~lg~~~~H~v~Dg~~~~~Fl~~wa~~~rg~~~-~~~P  186 (439)
T 4g22_A          108 DDFGDFAPTLELRRLIPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMARGLDV-TLPP  186 (439)
T ss_dssp             GGGTTCCCCGGGGGGSCCCCTTSCTTSSCSEEEEEEECTTSCEEEEEEECTTTCCHHHHHHHHHHHHHHHTTCCC-SSCC
T ss_pred             HHhcCCCCCHHHHhcCCCCCcccccccCceeEEEEEEecCCCEEEEEEeeeccCcHHHHHHHHHHHHHHhCCCCC-CCCC
Confidence            9997632334567788754     24679 9999999999999999                9999999999753 5678


Q ss_pred             CCCccccc---C--------------------------C-CCccEEEEEECHHHHHHHHHHhhcCC-CCCCChhhhHHHH
Q 035582          136 NNDVSYLF---P--------------------------Q-NNDATRRFVFDAKAIATLKAKATSSW-VQNPTRAEAAPAV  184 (268)
Q Consensus       136 ~~dr~~~~---p--------------------------~-~~~~~~~f~fs~~~i~~Lk~~a~~~~-~~~~St~d~l~A~  184 (268)
                      .+||+.+.   |                          + .++..+.|+|++++|++||+++.++. ..++||||+|+||
T Consensus       187 ~~dr~~l~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fs~~~i~~LK~~a~~~~~~~~~St~dal~A~  266 (439)
T 4g22_A          187 FIDRTLLRARDPPQPQFQHIEYQPPPALAVSPQTAASDSVPETAVSIFKLTREQISALKAKSKEDGNTISYSSYEMLAGH  266 (439)
T ss_dssp             BCCGGGGCCCSSCCCSSCCGGGSCCC---------------CEEEEEEEECHHHHHHHHHGGGGGGCCCCCCHHHHHHHH
T ss_pred             ccccccccCCCCCCCCcCcccccCCCCCcccccccccCCcccceEEEEEECHHHHHHHHHHhhccCCCCCccHHHHHHHH
Confidence            88875431   1                          0 24678899999999999999998653 4689999999999


Q ss_pred             HHHHHHHHhcCCCCCCcceEEEEEecCcCCCCCCCCcCccccceecceeeecCCC---ccHHHHHHHHHHHHHhchHHHH
Q 035582          185 LCKSIIAAFKAKSSSLKPTLLTHLVNLRRKARPPLSEYSMGKIVWMANALCTDDE---PELDSLVCLLREAIKKIDGDFM  261 (268)
Q Consensus       185 lW~~~~rar~~~~~~~~~~~l~~~vd~R~r~~p~lp~~y~GN~v~~~~~~~~~~e---~~l~~~A~~Ir~~i~~~~~~~~  261 (268)
                      +|+|++|||+..+  ++++.+.++||+|+|++||+|++||||++..+.+.++++|   .+|+++|.+||++|+++|+||+
T Consensus       267 iWr~~~rAr~~~~--~~~~~l~~~vd~R~rl~Pplp~~Y~GN~v~~~~~~~~~~el~~~~L~~~A~~Ir~ai~~~~~e~~  344 (439)
T 4g22_A          267 VWRCACKARGLEV--DQGTKLYIATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYL  344 (439)
T ss_dssp             HHHHHHHHTTCCT--TCEEEEEEEEECTTTSSSCCCTTBCSCCEEEECCEEEHHHHHHSCHHHHHHHHHHHHHTCSHHHH
T ss_pred             HHHHHHHhcCCCC--CCcEEEEEEEcccCCCCCCCCCCcccceeehhhcceEHHHHhhCcHHHHHHHHHHHHHhhCHHHH
Confidence            9999999998754  5889999999999999999999999999999999988887   6999999999999999999999


Q ss_pred             hhhc
Q 035582          262 KSLQ  265 (268)
Q Consensus       262 ~s~~  265 (268)
                      ++++
T Consensus       345 ~~~~  348 (439)
T 4g22_A          345 RSAL  348 (439)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9865

PyMOL of 4g22

>2bgh_A Vinorine synthase; VS, BAHD, acetyltransferase, auto-rickshaw, transferase; 2.6A {Rauvolfia serpentina}	Back alignment and structure

>2xr7_A Malonyltransferase; xenobiotics, naphthols; HET: MLC; 3.10A {Nicotiana tabacum}	Back alignment and structure

>2e1v_A Acyl transferase; BAHD superfamily, seleno-methionine derivative, dendranthema morifolium, DMAT; 1.80A {Chrysanthemum x morifolium} PDB: 2e1u_A 2e1t_A	Back alignment and structure

>2rkv_A Trichothecene 3-O-acetyltransferase; BAHD superfamily, deoxyniv T-2, acetyl COA, fusarium; HET: COA MPO ZBA; 1.60A {Gibberella zeae} PDB: 3b2s_A* 3b30_A* 2rkt_A* 2zba_A*	Back alignment and structure

>3fot_A 15-O-acetyltransferase; fusarium head blight, trichothecene mycotoxin, deoxynivaleno toxin, fusarium graminearum, coenzyme A; 1.75A {Fusarium sporotrichioides} PDB: 3fp0_A*	Back alignment and structure

>1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating enzyme PAPA5, structural genomics, PSI protein structure initiative; 2.75A {Mycobacterium tuberculosis} SCOP: c.43.1.2 c.43.1.2	Back alignment and structure

>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis}	Back alignment and structure

>2xhg_A Tyrocidine synthetase A; isomerase, nonribosomal peptide synthesis, cofactor-independ epimerization; 1.50A {Brevibacillus brevis}	Back alignment and structure

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}	Back alignment and structure

>1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		268
d1q9ja2		238	Polyketide synthase associated protein 5, PapA5 {M	97.52
d1l5aa2		250	VibH {Vibrio cholerae [TaxId: 666]}	85.45

>d1q9ja2 c.43.1.2 (A:181-418) Polyketide synthase associated protein 5, PapA5 {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: NRPS condensation domain (amide synthase)
domain: Polyketide synthase associated protein 5, PapA5
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.52  E-value=0.00059  Score=55.05  Aligned_cols=103  Identities=13%  Similarity=0.086  Sum_probs=80.2

Q ss_pred             ccEEEEEECHHHHHHHHHHhhcCCCCCCChhhhHHHHHHHHHHHHhcCCCCCCcceEEEEEecCcCCCCCCCCcCccccc
Q 035582          148 DATRRFVFDAKAIATLKAKATSSWVQNPTRAEAAPAVLCKSIIAAFKAKSSSLKPTLLTHLVNLRRKARPPLSEYSMGKI  227 (268)
Q Consensus       148 ~~~~~f~fs~~~i~~Lk~~a~~~~~~~~St~d~l~A~lW~~~~rar~~~~~~~~~~~l~~~vd~R~r~~p~lp~~y~GN~  227 (268)
                      .....+.++++..++|++.|.+.   .+|.+.++.|.+-..+.+-.+..   +....+..+++.|+++.|+...+.+||.
T Consensus        31 ~~~~~~~ls~~~t~~l~~~~~~~---~~T~~~~l~aa~~~~l~~~~~~~---~~~~~~~~~~~~r~~~~~~~~~~~~G~~  104 (238)
T d1q9ja2          31 VPVTRLWLSKQQTSDLMAFGREH---RLSLNAVVAAAILLTEWQLRNTP---HVPIPYVYPVDLRFVLAPPVAPTEATNL  104 (238)
T ss_dssp             CCEEEECCCHHHHHHHHHHHTTT---TCCHHHHHHHHHHHHHHHHHTCS---SCCEEEEEEEETTTTSSSCCCTTTBSCC
T ss_pred             CceEEEEeCHHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHHhCCC---CccccccccccccccccCccccceeEee
Confidence            34556789999999999999764   58889988886655555544331   3567889999999999988888899999


Q ss_pred             eecceeeecCCC-ccHHHHHHHHHHHHHhc
Q 035582          228 VWMANALCTDDE-PELDSLVCLLREAIKKI  256 (268)
Q Consensus       228 v~~~~~~~~~~e-~~l~~~A~~Ir~~i~~~  256 (268)
                      +........... .++.++++.+++.+...
T Consensus       105 ~~~~~~r~~~~~~~~~~~l~~~v~~~l~~~  134 (238)
T d1q9ja2         105 LGAASYLAEIGPNTDIVDLASDIVATLRAD  134 (238)
T ss_dssp             EEEEEEEECCCSSCCHHHHHHHHHHHHHHH
T ss_pred             eeeEEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence            887777776654 68888999988887653

PyMOL of d1q9ja2

>d1l5aa2 c.43.1.2 (A:175-424) VibH {Vibrio cholerae [TaxId: 666]}	Back information, alignment and structure