Citrus Sinensis ID: 035585

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180---
Protein Sequence
ARRFDDRIFYRTIAEEVWLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVLLNMSLCRSEEEESACQ
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccEEEEEccccccHHHHHHHHHHHHcccccccEEEEEEEcccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccEEEEEcccccccccccccccccccccccEEEEEEccHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHHHcccccEEEEEEEcccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccEEEEEEcHHHHHccHHHccccccccccccEEEEEEccHHHHHHccccccEEEEEccc
Coil and Loop (DISEMBL)
ARRFDDRIFYRTIAEEVWLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFsevsqtpdiKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKYldletvgipfgddhrGCKLLLTARDCNVLLNMSlcrseeeesacq
Flexible Loop (DISEMBL)
arrfddrifyrtiaeevwlksnkgyEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVfsevsqtpdikKIHGEIAEklglefseeaesRRASRLYERLKKEKMILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVLLNMSlcrseeeesacq
Low Complexity Region (SEG)
ARRFDDRIFYRTIAEEVWLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFseeaesrrasrLYERLKKEKMILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVLLNMSLCRSEEEESACQ
Disordered region (IsUnstruct)
*****DRIFYRTIAEEVWLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKL***************LYERLKKEKMILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVLLNMSLC**********
Disordered Region (DISOPRED)
*****DR**********************SRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFS**AESRRASRLYERLKKEKMILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVLLNMSLCRSEEEESAC*
Disordered Region (DISEMBL)
ARRFDDRIFYRTIAEEVWLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFS********SRLYERLKKEKMILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVLLNMSLC**********
Disordered Region (DISPRO)
**************************AFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVLLNMSLCRSEEEESAC*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
ARRFDDRIFYRTIAEEVWLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVLLNMSLCRSEEEESACQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	183	2.2.26 [Sep-21-2011]
Q9T048	985	Disease resistance protei	yes	no	0.748	0.139	0.394	3e-21
P60838	894	Probable disease resistan	no	no	0.726	0.148	0.384	6e-20
O64973	889	Disease resistance protei	no	no	0.672	0.138	0.375	1e-17
Q8L3R3	885	Disease resistance protei	no	no	0.693	0.143	0.367	2e-17
O23317	719	Probable disease resistan	no	no	0.759	0.193	0.347	3e-17
O22727	967	Probable disease resistan	no	no	0.699	0.132	0.383	4e-17
Q8RXS5	888	Probable disease resistan	no	no	0.677	0.139	0.377	6e-17
O64790	762	Probable disease resistan	no	no	0.699	0.167	0.366	4e-16
P60839	884	Probable disease resistan	no	no	0.759	0.157	0.347	7e-16
Q9LVT3	948	Probable disease resistan	no	no	0.644	0.124	0.371	9e-16

>sp|Q9T048|DRL27_ARATH Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1

 Score =  101 bits (251), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 58/147 (39%), Positives = 92/147 (62%), Gaps = 10/147 (6%)

Query: 33  STLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEE---KLFDQVVFSEVSQTP 89
           + L  I+D LT      +GV+GMGG+GKTTLV+    +  EE   + F  V+F  VS+  
Sbjct: 150 NMLAKIRDGLTSEKAQKIGVWGMGGVGKTTLVRTLNNKLREEGATQPFGLVIFVIVSKEF 209

Query: 90  DIKKIHGEIAEKLGLEFS-EEAESRRASRLYERLKKEKMILVILDNIWKYLDLETVGIPF 148
           D +++  +IAE+L ++   EE+E + A R+Y  L KE+  L+ILD++WK +DL+ +GIP 
Sbjct: 210 DPREVQKQIAERLDIDTQMEESEEKLARRIYVGLMKERKFLLILDDVWKPIDLDLLGIPR 269

Query: 149 GDDHRGCKLLLTARDCNVLLNMSLCRS 175
            ++++G K++LT+R   V      CRS
Sbjct: 270 TEENKGSKVILTSRFLEV------CRS 290

Disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|P60838|DRL1_ARATH Probable disease resistance protein At1g12280 OS=Arabidopsis thaliana GN=At1g12280 PE=3 SV=1

 Score = 97.1 bits (240), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 53/138 (38%), Positives = 87/138 (63%), Gaps = 5/138 (3%)

Query: 33  STLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEE-KLFDQVVFSEVSQTPDI 91
           + L+ +   LT+    IVG+YGMGG+GKTTL+     + SE+   F  V++  VS++PDI
Sbjct: 162 TMLERVWTRLTEDGDEIVGLYGMGGVGKTTLLTRINNKFSEKCSGFGVVIWVVVSKSPDI 221

Query: 92  KKIHGEIAEKLGL---EFSEEAESRRASRLYERLKKEKMILVILDNIWKYLDLETVGIPF 148
            +I G+I ++L L   E+    E++RA  +Y  L K+K +L +LD+IW+ ++LE +G+P+
Sbjct: 222 HRIQGDIGKRLDLGGEEWDNVNENQRALDIYNVLGKQKFVL-LLDDIWEKVNLEVLGVPY 280

Query: 149 GDDHRGCKLLLTARDCNV 166
                GCK++ T R  +V
Sbjct: 281 PSRQNGCKVVFTTRSRDV 298

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64973|RPS5_ARATH Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2

 Score = 89.4 bits (220), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/128 (37%), Positives = 85/128 (66%), Gaps = 5/128 (3%)

Query: 49  IVGVYGMGGIGKTTLVKEFARQASE-EKLFDQVVFSEVSQTPDIKKIHGEIAEKLGL--- 104
           I+G+YGMGG+GKTTL+ +   + S+ +  FD V++  VS++  ++KI  +IAEK+GL   
Sbjct: 178 ILGLYGMGGVGKTTLLTKINNKFSKIDDRFDVVIWVVVSRSSTVRKIQRDIAEKVGLGGM 237

Query: 105 EFSEEAESRRASRLYERLKKEKMILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDC 164
           E+SE+ +++ A  ++  L++ K +L +LD+IW+ ++L+ VG+P+     GCK+  T R  
Sbjct: 238 EWSEKNDNQIAVDIHNVLRRRKFVL-LLDDIWEKVNLKAVGVPYPSKDNGCKVAFTTRSR 296

Query: 165 NVLLNMSL 172
           +V   M +
Sbjct: 297 DVCGRMGV 304

Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. Also confers resistance against Hyaloperonospora parasitica (downy mildew). Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Requires PBS1 to trigger the defense reaction against avrPphB. Probably triggers the defense mechanism when PBS1 is cleaved by avrPphB, suggesting that it detects indirectly the protease activity of avrPphB, and possibly binds to the cleaved RPS5.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L3R3|RFL1_ARATH Disease resistance protein RFL1 OS=Arabidopsis thaliana GN=RFL1 PE=3 SV=2

 Score = 89.0 bits (219), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/136 (36%), Positives = 83/136 (61%), Gaps = 9/136 (6%)

Query: 33  STLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKL---FDQVVFSEVSQTP 89
           S L  + + L +  V IVG+YGMGG+GKTTL+ +   + S  KL   FD V++  VS+  
Sbjct: 162 SMLDKVWNCLMEDKVWIVGLYGMGGVGKTTLLTQINNKFS--KLGGGFDVVIWVVVSKNA 219

Query: 90  DIKKIHGEIAEKLGL---EFSEEAESRRASRLYERLKKEKMILVILDNIWKYLDLETVGI 146
            + KI   I EKLGL    + E+ +++RA  ++  L+++K +L +LD+IW+ ++L+ +G+
Sbjct: 220 TVHKIQKSIGEKLGLVGKNWDEKNKNQRALDIHNVLRRKKFVL-LLDDIWEKVELKVIGV 278

Query: 147 PFGDDHRGCKLLLTAR 162
           P+     GCK+  T  
Sbjct: 279 PYPSGENGCKVAFTTH 294

Disease resistance (R) protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O23317|DRL24_ARATH Probable disease resistance protein At4g14610 OS=Arabidopsis thaliana GN=At4g14610 PE=3 SV=1

 Score = 88.2 bits (217), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 90/144 (62%), Gaps = 5/144 (3%)

Query: 33  STLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASE-EKLFDQVVFSEVSQTPDI 91
           + L+ + + L      I+G+YGMGG+GKTTL+ +  ++ SE +  FD V++  VS+T +I
Sbjct: 135 TMLERVWNTLMKDGFKIMGLYGMGGVGKTTLLTQINKKFSETDGGFDIVMWVVVSKTSEI 194

Query: 92  KKIHGEIAEKLGL---EFSEEAESRRASRLYERLKKEKMILVILDNIWKYLDLETVGIPF 148
            +I  +IA++LGL   E+ ++ E++RA  ++  L++ K +L +LD+IW+ ++LE VG+P+
Sbjct: 195 YRIQEDIAKRLGLTGEEWDKKNENKRAVDIHNVLRRHKFVL-LLDDIWEKVNLELVGVPY 253

Query: 149 GDDHRGCKLLLTARDCNVLLNMSL 172
                G  +  T R  +V   M +
Sbjct: 254 PSRENGSIVAFTTRSRDVCGRMGV 277

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O22727|DRL16_ARATH Probable disease resistance protein At1g61190 OS=Arabidopsis thaliana GN=At1g61190 PE=3 SV=1

 Score = 87.8 bits (216), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/133 (38%), Positives = 82/133 (61%), Gaps = 5/133 (3%)

Query: 35  LKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEK-LFDQVVFSEVSQTPDIKK 93
           LK   + L +  V I+G++GMGG+GKTTL K+   + +E    FD V++  VSQ   + K
Sbjct: 161 LKKAWNRLMEDGVGIMGLHGMGGVGKTTLFKKIHNKFAETGGTFDIVIWIVVSQGAKLSK 220

Query: 94  IHGEIAEKLGL---EFSEEAESRRASRLYERLKKEKMILVILDNIWKYLDLETVGIPFGD 150
           +  +IAEKL L    +  + ES +A+ ++  LK ++ +L +LD+IW+ +DLE +GIP+  
Sbjct: 221 LQEDIAEKLHLCDDLWKNKNESDKATDIHRVLKGKRFVL-MLDDIWEKVDLEAIGIPYPS 279

Query: 151 DHRGCKLLLTARD 163
           +   CK+  T RD
Sbjct: 280 EVNKCKVAFTTRD 292

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RXS5|DRL40_ARATH Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2

 Score = 87.0 bits (214), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 81/135 (60%), Gaps = 11/135 (8%)

Query: 35  LKSIQDALTDVNVNIVGVYGMGGIGKTTLVKE----FARQASEEKLFDQVVFSEVSQTPD 90
           L+S  + L +  + I+G++GMGG+GKTTL+      F+R   E   FD V++  VS+   
Sbjct: 162 LESAWNRLMEDEIGILGLHGMGGVGKTTLLSHINNRFSRVGGE---FDIVIWIVVSKELQ 218

Query: 91  IKKIHGEIAEKL---GLEFSEEAESRRASRLYERLKKEKMILVILDNIWKYLDLETVGIP 147
           I++I  EI EKL     ++ ++ E  +AS +Y  LK ++ +L +LD+IW  +DL  VG+P
Sbjct: 219 IQRIQDEIWEKLRSDNEKWKQKTEDIKASNIYNVLKHKRFVL-LLDDIWSKVDLTEVGVP 277

Query: 148 FGDDHRGCKLLLTAR 162
           F     GCK++ T R
Sbjct: 278 FPSRENGCKIVFTTR 292

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64790|DRL17_ARATH Probable disease resistance protein At1g61300 OS=Arabidopsis thaliana GN=At1g61300 PE=2 SV=2

 Score = 84.3 bits (207), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 85/139 (61%), Gaps = 11/139 (7%)

Query: 35  LKSIQDALTDVNVNIVGVYGMGGIGKTTLVKE----FARQASEEKLFDQVVFSEVSQTPD 90
           L+   + L +  V I+G++GMGG+GKTTL K+    FA+ +S    FD V++  VS+   
Sbjct: 49  LEKAWNRLMEDRVGIMGLHGMGGVGKTTLFKKIHNKFAKMSSR---FDIVIWIVVSKGAK 105

Query: 91  IKKIHGEIAEKLGL---EFSEEAESRRASRLYERLKKEKMILVILDNIWKYLDLETVGIP 147
           + K+  +IAEKL L    +  + ES +A+ ++  LK ++ +L +LD+IW+ +DLE +G+P
Sbjct: 106 LSKLQEDIAEKLHLCDDLWKNKNESDKATDIHRVLKGKRFVL-MLDDIWEKVDLEAIGVP 164

Query: 148 FGDDHRGCKLLLTARDCNV 166
           +  +   CK+  T RD  V
Sbjct: 165 YPSEVNKCKVAFTTRDQKV 183

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P60839|DRL2_ARATH Probable disease resistance protein At1g12290 OS=Arabidopsis thaliana GN=At1g12290 PE=2 SV=1

 Score = 83.6 bits (205), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 84/144 (58%), Gaps = 5/144 (3%)

Query: 33  STLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFA-RQASEEKLFDQVVFSEVSQTPDI 91
           + L+   D L D    I+G+YGMGG+GKTTL+ +   R    +   + V++  VS    I
Sbjct: 161 TILEKAWDHLMDDGTKIMGLYGMGGVGKTTLLTQINNRFCDTDDGVEIVIWVVVSGDLQI 220

Query: 92  KKIHGEIAEKLG---LEFSEEAESRRASRLYERLKKEKMILVILDNIWKYLDLETVGIPF 148
            KI  EI EK+G   +E+++++E+++A  +   L K++ +L +LD+IWK ++L  +GIP 
Sbjct: 221 HKIQKEIGEKIGFIGVEWNQKSENQKAVDILNFLSKKRFVL-LLDDIWKRVELTEIGIPN 279

Query: 149 GDDHRGCKLLLTARDCNVLLNMSL 172
                GCK+  T R  +V  +M +
Sbjct: 280 PTSENGCKIAFTTRCQSVCASMGV 303

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVT3|DRL38_ARATH Probable disease resistance protein At5g47260 OS=Arabidopsis thaliana GN=At5g47260 PE=3 SV=2

 Score = 83.2 bits (204), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 74/121 (61%), Gaps = 3/121 (2%)

Query: 42  LTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEK 101
           L D+NV  +G+YG GG+GKTTL+ +  R       F  V+F  V    +++ I  EI ++
Sbjct: 164 LMDINVGTLGIYGRGGVGKTTLLTKL-RNKLLVDAFGLVIFVVVG-FEEVESIQDEIGKR 221

Query: 102 LGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTA 161
           LGL++  E + R+A+ +   LK+++ +L +LD I + LDLE +G+PF     GCK++ T 
Sbjct: 222 LGLQWRRETKERKAAEILAVLKEKRFVL-LLDGIQRELDLEEIGVPFPSRDNGCKIVFTT 280

Query: 162 R 162
           +
Sbjct: 281 Q 281

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
359488027	1520	PREDICTED: disease resistance protein At	0.896	0.107	0.573	8e-49
147802546	1409	hypothetical protein VITISV_007222 [Viti	0.896	0.116	0.573	2e-48
147787802	1517	hypothetical protein VITISV_005047 [Viti	0.874	0.105	0.527	6e-44
302143590	948	unnamed protein product [Vitis vinifera]	0.874	0.168	0.527	9e-44
147772601	1392	hypothetical protein VITISV_013427 [Viti	0.879	0.115	0.518	2e-43
359488101	1677	PREDICTED: disease resistance protein At	0.868	0.094	0.524	2e-43
302143655	1224	unnamed protein product [Vitis vinifera]	0.868	0.129	0.524	2e-43
359488108	1436	PREDICTED: disease resistance protein At	0.879	0.112	0.518	7e-43
359488025	1781	PREDICTED: uncharacterized protein LOC10	0.879	0.090	0.518	9e-43
296087869	1711	unnamed protein product [Vitis vinifera]	0.879	0.094	0.518	9e-43

>gi|359488027|ref|XP_002269288.2| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  198 bits (504), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 94/164 (57%), Positives = 128/164 (78%)

Query: 6   DRIFYRTIAEEVWLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVK 65
           +R+ YR     +     KG+EA +SR++TL  I +AL D +VNI+GV+GM G+GKTTL+K
Sbjct: 132 ERVSYRAPLPGIGSAPFKGHEALESRMTTLDEIMEALRDAHVNIIGVWGMAGVGKTTLMK 191

Query: 66  EFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKE 125
           + A+QA EEKLFD+VV + +S TP++KKI GE+A+ LGL+F EE+E  RA+RL ERLKK 
Sbjct: 192 QVAKQAEEEKLFDKVVMAYISSTPELKKIQGELADMLGLKFEEESEMGRAARLCERLKKV 251

Query: 126 KMILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVLLN 169
           K IL+ILD+IW  LDLE VGIPFGDDH+GCK++LT+R+ ++L N
Sbjct: 252 KKILIILDDIWTELDLEKVGIPFGDDHKGCKMVLTSRNKHILSN 295

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147802546|emb|CAN77665.1| hypothetical protein VITISV_007222 [Vitis vinifera]

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 94/164 (57%), Positives = 127/164 (77%)

Query: 6   DRIFYRTIAEEVWLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVK 65
           +R+ YR     +     KG+EA +SR++TL  I +AL D +VNI+GV+GM G+GKTTL+K
Sbjct: 132 ERVSYRAPLPGIGSAPFKGHEALESRMTTLDEIMEALRDAHVNIIGVWGMAGVGKTTLMK 191

Query: 66  EFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKE 125
           + A+Q  EEKLFD+VV + +S TP++KKI GE+A+ LGL+F EE+E  RA+RL ERLKK 
Sbjct: 192 QVAKQVEEEKLFDKVVMAYISSTPELKKIQGELADMLGLKFEEESEMGRAARLCERLKKV 251

Query: 126 KMILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVLLN 169
           K IL+ILD+IW  LDLE VGIPFGDDH+GCK++LT+R+ +VL N
Sbjct: 252 KKILIILDDIWTELDLEKVGIPFGDDHKGCKMVLTSRNKHVLSN 295

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147787802|emb|CAN71755.1| hypothetical protein VITISV_005047 [Vitis vinifera]

 Score =  182 bits (461), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 86/163 (52%), Positives = 122/163 (74%), Gaps = 3/163 (1%)

Query: 7   RIFYRTIAEEVWLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKE 66
           R+ YR   +E+    +   EA +SR+ TL  + +AL D  +N +GV+G+GG+GKTTLVK+
Sbjct: 133 RVSYRAPLQEI---RSAPSEALRSRVLTLDEVMEALRDAKINKIGVWGLGGVGKTTLVKQ 189

Query: 67  FARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEK 126
            A QA++EKLFD+VV + V QTPD+KKI GE+A+ LG++F EE+E  RA+RLY+R+  EK
Sbjct: 190 VAEQAAQEKLFDKVVTAAVLQTPDLKKIQGELADLLGMKFEEESEQGRAARLYQRMNNEK 249

Query: 127 MILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVLLN 169
            IL+ILD+IW  LDLE +GIP  D H+GCKL+LT+R+ ++L N
Sbjct: 250 TILIILDDIWAKLDLEKIGIPSPDHHKGCKLVLTSRNEHILSN 292

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143590|emb|CBI22343.3| unnamed protein product [Vitis vinifera]

 Score =  181 bits (460), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 86/163 (52%), Positives = 122/163 (74%), Gaps = 3/163 (1%)

Query: 7   RIFYRTIAEEVWLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKE 66
           R+ YR   +E+    +   EA +SR+ TL  + +AL D  +N +GV+G+GG+GKTTLVK+
Sbjct: 133 RVSYRAPLQEI---RSAPSEALRSRVLTLDEVMEALRDAKINKIGVWGLGGVGKTTLVKQ 189

Query: 67  FARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEK 126
            A QA++EKLFD+VV + V QTPD+KKI GE+A+ LG++F EE+E  RA+RLY+R+  EK
Sbjct: 190 VAEQAAQEKLFDKVVTAAVLQTPDLKKIQGELADLLGMKFEEESEQGRAARLYQRMNNEK 249

Query: 127 MILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVLLN 169
            IL+ILD+IW  LDLE +GIP  D H+GCKL+LT+R+ ++L N
Sbjct: 250 TILIILDDIWAKLDLEKIGIPSPDHHKGCKLVLTSRNEHILSN 292

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147772601|emb|CAN62857.1| hypothetical protein VITISV_013427 [Vitis vinifera]

 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 85/164 (51%), Positives = 123/164 (75%), Gaps = 3/164 (1%)

Query: 6   DRIFYRTIAEEVWLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVK 65
           +R+ YR   +E+    +   EA +SR+ TL  + +AL D  +N +GV+G+GG+GKTTLVK
Sbjct: 132 ERVSYRAPLQEI---RSAPSEALRSRVLTLDEVMEALRDAKINKIGVWGLGGVGKTTLVK 188

Query: 66  EFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKE 125
           + A  A++EKLFD+VV + V QTPD+KKI GE+A+ LG++F EE+E  RA+RLY+R+ +E
Sbjct: 189 QVAEHAAQEKLFDKVVTAAVLQTPDLKKIQGELADLLGMKFEEESEQGRAARLYQRMNEE 248

Query: 126 KMILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVLLN 169
           K IL+ILD+IW  LDLE +GIP  D H+GCKL+LT+R+ ++L N
Sbjct: 249 KTILIILDDIWATLDLEKIGIPSPDHHKGCKLVLTSRNEHILSN 292

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488101|ref|XP_002263761.2| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 85/162 (52%), Positives = 123/162 (75%), Gaps = 3/162 (1%)

Query: 6   DRIFYRTIAEEVWLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVK 65
           +R+ YR   +E+    +   EA +SR+ TL  + +AL D  +N +GV+G+GG+GKTTLVK
Sbjct: 132 ERVSYRAPQQEI---RSAPSEALRSRVLTLDEVMEALRDAKINKIGVWGLGGVGKTTLVK 188

Query: 66  EFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKE 125
           + A QA++EKLFD+VV + V QTPD+KKI GE+A+ LG++F EE+E  RA+RLY+R+ +E
Sbjct: 189 QVAEQAAQEKLFDKVVKAAVLQTPDLKKIQGELADLLGMKFEEESEQGRAARLYQRMNEE 248

Query: 126 KMILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVL 167
           K IL+ILD+IW  LDLE +GIP  D H+GCKL+LT+R+ ++L
Sbjct: 249 KTILIILDDIWAKLDLEKIGIPSPDHHKGCKLVLTSRNEHIL 290

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143655|emb|CBI22408.3| unnamed protein product [Vitis vinifera]

 Score =  180 bits (456), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 85/162 (52%), Positives = 123/162 (75%), Gaps = 3/162 (1%)

Query: 6   DRIFYRTIAEEVWLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVK 65
           +R+ YR   +E+    +   EA +SR+ TL  + +AL D  +N +GV+G+GG+GKTTLVK
Sbjct: 132 ERVSYRAPQQEI---RSAPSEALRSRVLTLDEVMEALRDAKINKIGVWGLGGVGKTTLVK 188

Query: 66  EFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKE 125
           + A QA++EKLFD+VV + V QTPD+KKI GE+A+ LG++F EE+E  RA+RLY+R+ +E
Sbjct: 189 QVAEQAAQEKLFDKVVKAAVLQTPDLKKIQGELADLLGMKFEEESEQGRAARLYQRMNEE 248

Query: 126 KMILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVL 167
           K IL+ILD+IW  LDLE +GIP  D H+GCKL+LT+R+ ++L
Sbjct: 249 KTILIILDDIWAKLDLEKIGIPSPDHHKGCKLVLTSRNEHIL 290

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488108|ref|XP_003633701.1| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  178 bits (452), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 85/164 (51%), Positives = 123/164 (75%), Gaps = 3/164 (1%)

Query: 6   DRIFYRTIAEEVWLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVK 65
           +R+ YR   +E+    +   EA +SR+ TL  +  AL D  +N +GV+G+GG+GKTTLVK
Sbjct: 137 ERVSYRAPLQEI---RSAPSEALESRMLTLNEVMVALRDAKINKIGVWGLGGVGKTTLVK 193

Query: 66  EFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKE 125
           + A QA++EKLFD+VV + V +TPD+KKI GE+A+ LG++F EE+E  RA+RLY+R+ +E
Sbjct: 194 QVAEQAAQEKLFDKVVTAAVLETPDLKKIQGELADLLGMKFEEESEQGRAARLYQRMNEE 253

Query: 126 KMILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVLLN 169
           K IL+ILD+IW  LDLE +GIP  D H+GCKL+LT+R+ ++L N
Sbjct: 254 KTILIILDDIWAKLDLEKIGIPSPDHHKGCKLVLTSRNEHILSN 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488025|ref|XP_003633688.1| PREDICTED: uncharacterized protein LOC100852821 [Vitis vinifera]

 Score =  178 bits (451), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 85/164 (51%), Positives = 122/164 (74%), Gaps = 3/164 (1%)

Query: 6   DRIFYRTIAEEVWLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVK 65
           +R  YR   +E+    +   EA +SR+ TL  +  AL D  +N +GV+G+GG+GKTTLVK
Sbjct: 131 ERASYRAPLQEI---RSAPSEALESRMLTLNEVMKALRDAKINKIGVWGLGGVGKTTLVK 187

Query: 66  EFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKE 125
           + A QA++EKLFD+VV + V +TPD+KKI GE+A+ LG++F EE+E  RA+RLY+R+ +E
Sbjct: 188 QVAEQAAQEKLFDKVVTAAVLETPDLKKIQGELADLLGMKFEEESEQGRAARLYQRMNEE 247

Query: 126 KMILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVLLN 169
           K IL+ILD+IW  LDLE +GIP  D H+GCKL+LT+R+ ++L N
Sbjct: 248 KTILIILDDIWAKLDLEKIGIPSPDHHKGCKLVLTSRNEHILSN 291

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087869|emb|CBI35152.3| unnamed protein product [Vitis vinifera]

 Score =  178 bits (451), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 85/164 (51%), Positives = 122/164 (74%), Gaps = 3/164 (1%)

Query: 6   DRIFYRTIAEEVWLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVK 65
           +R  YR   +E+    +   EA +SR+ TL  +  AL D  +N +GV+G+GG+GKTTLVK
Sbjct: 131 ERASYRAPLQEI---RSAPSEALESRMLTLNEVMKALRDAKINKIGVWGLGGVGKTTLVK 187

Query: 66  EFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKE 125
           + A QA++EKLFD+VV + V +TPD+KKI GE+A+ LG++F EE+E  RA+RLY+R+ +E
Sbjct: 188 QVAEQAAQEKLFDKVVTAAVLETPDLKKIQGELADLLGMKFEEESEQGRAARLYQRMNEE 247

Query: 126 KMILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVLLN 169
           K IL+ILD+IW  LDLE +GIP  D H+GCKL+LT+R+ ++L N
Sbjct: 248 KTILIILDDIWAKLDLEKIGIPSPDHHKGCKLVLTSRNEHILSN 291

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
TAIR|locus:2034770	894	SUMM2 "AT1G12280" [Arabidopsis	0.792	0.162	0.348	1.5e-17
TAIR|locus:2136447	985	AT4G27190 [Arabidopsis thalian	0.743	0.138	0.364	1.7e-17
TAIR|locus:2203881	893	AT1G62630 [Arabidopsis thalian	0.699	0.143	0.368	6.4e-17
TAIR|locus:2008510	967	AT1G61190 "AT1G61190" [Arabido	0.721	0.136	0.362	7.3e-17
TAIR|locus:2131689	919	AT4G27220 [Arabidopsis thalian	0.825	0.164	0.339	1.8e-16
TAIR|locus:2201996	889	RPS5 "AT1G12220" [Arabidopsis	0.792	0.163	0.322	3.6e-16
TAIR|locus:2197739	762	AT1G61300 [Arabidopsis thalian	0.721	0.173	0.340	5.3e-16
TAIR|locus:2031356	884	AT1G63360 [Arabidopsis thalian	0.710	0.147	0.362	5.3e-15
TAIR|locus:2201986	885	RFL1 "AT1G12210" [Arabidopsis	0.748	0.154	0.335	6.8e-15
TAIR|locus:2008440	899	AT1G61180 [Arabidopsis thalian	0.721	0.146	0.348	7.6e-15

TAIR|locus:2034770 SUMM2 "AT1G12280" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 1.5e-17, P = 1.5e-17
 Identities = 53/152 (34%), Positives = 87/152 (57%)

Query:    35 LKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEE-KLFDQVVFSEVSQTPDIKK 93
             L+ +   LT+    IVG+YGMGG+GKTTL+     + SE+   F  V++  VS++PDI +
Sbjct:   164 LERVWTRLTEDGDEIVGLYGMGGVGKTTLLTRINNKFSEKCSGFGVVIWVVVSKSPDIHR 223

Query:    94 IHGEIAEKLGL---EFXXXXXXXXXXXLYERLKKEKMILVILDNIWKYLDLETVGIPFGD 150
             I G+I ++L L   E+           +Y  L K+K +L +LD+IW+ ++LE +G+P+  
Sbjct:   224 IQGDIGKRLDLGGEEWDNVNENQRALDIYNVLGKQKFVL-LLDDIWEKVNLEVLGVPYPS 282

Query:   151 DHRGCKLLLTARDCNVLLNMSLCRSEEEESAC 182
                GCK++ T R  +V   M +   +  E +C
Sbjct:   283 RQNGCKVVFTTRSRDVCGRMRV--DDPMEVSC 312

GO:0006952 "defense response" evidence=IGI;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2136447 AT4G27190 [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 1.7e-17, P = 1.7e-17
 Identities = 51/140 (36%), Positives = 83/140 (59%)

Query:    35 LKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEE---KLFDQVVFSEVSQTPDI 91
             L  I+D LT      +GV+GMGG+GKTTLV+    +  EE   + F  V+F  VS+  D 
Sbjct:   152 LAKIRDGLTSEKAQKIGVWGMGGVGKTTLVRTLNNKLREEGATQPFGLVIFVIVSKEFDP 211

Query:    92 KKIHGEIAEKLGLEFXXXXXXXXXXX-LYERLKKEKMILVILDNIWKYLDLETVGIPFGD 150
             +++  +IAE+L ++             +Y  L KE+  L+ILD++WK +DL+ +GIP  +
Sbjct:   212 REVQKQIAERLDIDTQMEESEEKLARRIYVGLMKERKFLLILDDVWKPIDLDLLGIPRTE 271

Query:   151 DHRGCKLLLTARDCNVLLNM 170
             +++G K++LT+R   V  +M
Sbjct:   272 ENKGSKVILTSRFLEVCRSM 291

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2203881 AT1G62630 [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 6.4e-17, P = 6.4e-17
 Identities = 49/133 (36%), Positives = 77/133 (57%)

Query:    42 LTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKL-FDQVVFSEVSQTPDIKKIHGEIAE 100
             L +    I+G+YGMGG+GKTTL+ +     +++K  FD  ++  VSQ  +++KI  EIA+
Sbjct:   167 LMEDGTGIMGMYGMGGVGKTTLLTQLFNMFNKDKCGFDIGIWVVVSQEVNVEKIQDEIAQ 226

Query:   101 KLGL---EFXXXXXXXXXXXLYERLKKEKMILVILDNIWKYLDLETVGIPFGDDHRGCKL 157
             KLGL   E+           L+  LK +K +L  LD++W  ++L  +G+P     +GCKL
Sbjct:   227 KLGLGGHEWTQRDISQKGVHLFNFLKNKKFVL-FLDDLWDKVELANIGVPDPRTQKGCKL 285

Query:   158 LLTARDCNVLLNM 170
               T+R  NV  +M
Sbjct:   286 AFTSRSLNVCTSM 298

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2008510 AT1G61190 "AT1G61190" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 7.3e-17, Sum P(2) = 7.3e-17
 Identities = 49/135 (36%), Positives = 75/135 (55%)

Query:    35 LKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEK-LFDQVVFSEVSQTPDIKK 93
             LK   + L +  V I+G++GMGG+GKTTL K+   + +E    FD V++  VSQ   + K
Sbjct:   161 LKKAWNRLMEDGVGIMGLHGMGGVGKTTLFKKIHNKFAETGGTFDIVIWIVVSQGAKLSK 220

Query:    94 IHGEIAEKLGL--EFXXXXXXXXXXXLYERLKKEKMILVILDNIWKYLDLETVGIPFGDD 151
             +  +IAEKL L  +               R+ K K  +++LD+IW+ +DLE +GIP+  +
Sbjct:   221 LQEDIAEKLHLCDDLWKNKNESDKATDIHRVLKGKRFVLMLDDIWEKVDLEAIGIPYPSE 280

Query:   152 HRGCKLLLTARDCNV 166
                CK+  T RD  V
Sbjct:   281 VNKCKVAFTTRDQKV 295

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2131689 AT4G27220 [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 54/159 (33%), Positives = 89/159 (55%)

Query:    29 KSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVK----EFARQASEEKLFDQVVFSE 84
             K+ L  L  ++D L   NV  +GV+GMGG+GKTTLV+    +  + A+ ++ F  V++  
Sbjct:   116 KTALEMLDKLKDCLKKKNVQKIGVWGMGGVGKTTLVRTLNNDLLKYAATQQ-FALVIWVT 174

Query:    85 VSQTPDIKKIHGEIAEKLGLEFXXXXXXXXXXXLYERLKKEKMILVILDNIWKYLDLETV 144
             VS+  D+K++  +IA++LG  F           + ERL   K  L+ILD++W  +DL+ +
Sbjct:   175 VSKDFDLKRVQMDIAKRLGKRFTREQMNQLGLTICERLIDLKNFLLILDDVWHPIDLDQL 234

Query:   145 GIPFG-DDHRGCKLLLTARDCNVLLNMSLCRSEEEESAC 182
             GIP   +  +  K++LT+R   V   M    +E  + AC
Sbjct:   235 GIPLALERSKDSKVVLTSRRLEVCQQMMT--NENIKVAC 271

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2201996 RPS5 "AT1G12220" [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 3.6e-16, P = 3.6e-16
 Identities = 49/152 (32%), Positives = 87/152 (57%)

Query:    35 LKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASE-EKLFDQVVFSEVSQTPDIKK 93
             L+   + L +    I+G+YGMGG+GKTTL+ +   + S+ +  FD V++  VS++  ++K
Sbjct:   164 LEKAWNRLMEDGSGILGLYGMGGVGKTTLLTKINNKFSKIDDRFDVVIWVVVSRSSTVRK 223

Query:    94 IHGEIAEKLGL---EFXXXXXXXXXXXLYERLKKEKMILVILDNIWKYLDLETVGIPFGD 150
             I  +IAEK+GL   E+           ++  L++ K +L +LD+IW+ ++L+ VG+P+  
Sbjct:   224 IQRDIAEKVGLGGMEWSEKNDNQIAVDIHNVLRRRKFVL-LLDDIWEKVNLKAVGVPYPS 282

Query:   151 DHRGCKLLLTARDCNVLLNMSLCRSEEEESAC 182
                GCK+  T R  +V   M +   +  E +C
Sbjct:   283 KDNGCKVAFTTRSRDVCGRMGV--DDPMEVSC 312

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0006952 "defense response" evidence=IMP;TAS

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008219 "cell death" evidence=IMP

GO:0038023 "signaling receptor activity" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IMP

GO:0005622 "intracellular" evidence=ISS

TAIR|locus:2197739 AT1G61300 [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 5.3e-16, Sum P(2) = 5.3e-16
 Identities = 46/135 (34%), Positives = 74/135 (54%)

Query:    35 LKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQ-ASEEKLFDQVVFSEVSQTPDIKK 93
             L+   + L +  V I+G++GMGG+GKTTL K+   + A     FD V++  VS+   + K
Sbjct:    49 LEKAWNRLMEDRVGIMGLHGMGGVGKTTLFKKIHNKFAKMSSRFDIVIWIVVSKGAKLSK 108

Query:    94 IHGEIAEKLGL--EFXXXXXXXXXXXLYERLKKEKMILVILDNIWKYLDLETVGIPFGDD 151
             +  +IAEKL L  +               R+ K K  +++LD+IW+ +DLE +G+P+  +
Sbjct:   109 LQEDIAEKLHLCDDLWKNKNESDKATDIHRVLKGKRFVLMLDDIWEKVDLEAIGVPYPSE 168

Query:   152 HRGCKLLLTARDCNV 166
                CK+  T RD  V
Sbjct:   169 VNKCKVAFTTRDQKV 183

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2031356 AT1G63360 [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 5.3e-15, P = 5.3e-15
 Identities = 49/135 (36%), Positives = 75/135 (55%)

Query:    42 LTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKL-FDQVVFSEVSQTPDIKKIHGEIAE 100
             L +  V I+G+YGMGG+GKTTL+ +     +++K  FD  ++  VSQ   ++K+  EIA+
Sbjct:   167 LMEDGVGIMGMYGMGGVGKTTLLTQLYNMFNKDKCGFDIGIWVVVSQEFHVEKVQDEIAQ 226

Query:   101 KLGL---EFXXXXXXXXXXXLYERLKKEKMILVILDNIWKYLDLETVGIPFGDDHRGCKL 157
             KLGL   E+           LY  L+ EK  ++ LD+IW+ +DL  +G+P     +G KL
Sbjct:   227 KLGLGGDEWTQKDKSQKGICLYNILR-EKSFVLFLDDIWEKVDLAEIGVPDPRTKKGRKL 285

Query:   158 LLTARDCNVLLNMSL 172
               T R   V   M +
Sbjct:   286 AFTTRSQEVCARMGV 300

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2201986 RFL1 "AT1G12210" [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 6.8e-15, P = 6.8e-15
 Identities = 49/146 (33%), Positives = 79/146 (54%)

Query:    33 STLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKL---FDQVVFSEVSQTP 89
             S L  + + L +  V IVG+YGMGG+GKTTL+ +   + S  KL   FD V++  VS+  
Sbjct:   162 SMLDKVWNCLMEDKVWIVGLYGMGGVGKTTLLTQINNKFS--KLGGGFDVVIWVVVSKNA 219

Query:    90 DIKKIHGEIAEKLGL---EFXXXXXXXXXXXLYERLKKEKMILVILDNIWKYLDLETVGI 146
              + KI   I EKLGL    +           ++  L+++K +L +LD+IW+ ++L+ +G+
Sbjct:   220 TVHKIQKSIGEKLGLVGKNWDEKNKNQRALDIHNVLRRKKFVL-LLDDIWEKVELKVIGV 278

Query:   147 PFGDDHRGCKLLLTARDCNVLLNMSL 172
             P+     GCK+  T     V   M +
Sbjct:   279 PYPSGENGCKVAFTTHSKEVCGRMGV 304

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2008440 AT1G61180 [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 7.6e-15, Sum P(2) = 7.6e-15
 Identities = 47/135 (34%), Positives = 74/135 (54%)

Query:    35 LKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASE-EKLFDQVVFSEVSQTPDIKK 93
             L+   + L +  V I+G++GMGG+GKTTL K+   + +E    FD V++  VS+   I K
Sbjct:   160 LEKAWNRLMEDGVGIMGLHGMGGVGKTTLFKKIHNKFAEIGGTFDIVIWIVVSKGVMISK 219

Query:    94 IHGEIAEKLGL--EFXXXXXXXXXXXLYERLKKEKMILVILDNIWKYLDLETVGIPFGDD 151
             +  +IAEKL L  +               R+ K K  +++LD+IW+ +DLE +GIP+  +
Sbjct:   220 LQEDIAEKLHLCDDLWKNKNESDKATDIHRVLKGKRFVLMLDDIWEKVDLEAIGIPYPSE 279

Query:   152 HRGCKLLLTARDCNV 166
                CK+  T R   V
Sbjct:   280 VNKCKVAFTTRSREV 294

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	183
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	8e-25
pfam13401	124	pfam13401, AAA_22, AAA domain	7e-09
smart00382	148	smart00382, AAA, ATPases associated with a variety	3e-05
cd01120	165	cd01120, RecA-like_NTPases, RecA-like NTPases	5e-04
pfam13191	154	pfam13191, AAA_16, AAA ATPase domain	0.003
COG1474	366	COG1474, CDC6, Cdc6-related protein, AAA superfami	0.004

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score = 97.0 bits (242), Expect = 8e-25
 Identities = 45/129 (34%), Positives = 74/129 (57%), Gaps = 4/129 (3%)

Query: 46  NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLE 105
           N+ +VG+ GMGG+GKTTL K+     S    FD V +  VS+T    ++  +I ++LGL+
Sbjct: 18  NLGVVGIVGMGGVGKTTLAKQIYNDDSVGGHFDSVAWVVVSKTYTEFRLQKDILQELGLD 77

Query: 106 FSEEAE---SRRASRLYERLKKEKMILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTAR 162
            S+  E   S  A ++ E L   K  L++LD++W+  D + +G+PF D   G ++++T R
Sbjct: 78  DSDWVEKNESELAVKIKEAL-LRKRFLLVLDDVWEKNDWDKIGVPFPDGENGSRVIVTTR 136

Query: 163 DCNVLLNMS 171
             +V   M 
Sbjct: 137 SESVAGRMG 145

Length = 285

>gnl|CDD|222104 pfam13401, AAA_22, AAA domain

 Score = 51.1 bits (123), Expect = 7e-09
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 4/84 (4%)

Query: 52  VYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAE 111
           + G  G GKTTL++  ARQ        +VV+ E       K +  +I   LGL  S    
Sbjct: 9   LTGESGSGKTTLLRRLARQLPN----RRVVYVEAPSLGTPKDLLRKILRALGLPLSGGTT 64

Query: 112 SRRASRLYERLKKEKMILVILDNI 135
           +     + + LK+    L+I+D  
Sbjct: 65  AELLEAILDALKRRGRPLLIIDEA 88

Length = 124

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 41.6 bits (97), Expect = 3e-05
 Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 3/96 (3%)

Query: 48  NIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFS 107
            ++ + G  G GKTTL +  AR+          +  E      + ++   I        S
Sbjct: 3   EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGS 62

Query: 108 EEAESRRASRLYERLKKEKMILVILDNIWKYLDLET 143
            E    R        +K K  ++ILD I   LD E 
Sbjct: 63  GE---LRLRLALALARKLKPDVLILDEITSLLDAEQ 95

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|238540 cd01120, RecA-like_NTPases, RecA-like NTPases

 Score = 38.6 bits (90), Expect = 5e-04
 Identities = 19/96 (19%), Positives = 38/96 (39%), Gaps = 11/96 (11%)

Query: 49  IVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLE--- 105
           ++ V+G  G GKTTL  + A   + +    +VV+ ++ +  +            G     
Sbjct: 1   LILVFGPTGSGKTTLALQLALNIATKG--GKVVYVDIEEEIEELTERLIGESLKGALDNL 58

Query: 106 ------FSEEAESRRASRLYERLKKEKMILVILDNI 135
                   + A +R  S+     ++    L+ILD +
Sbjct: 59  IIVFATADDPAAARLLSKAERLRERGGDDLIILDEL 94

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. Length = 165

>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain

 Score = 36.0 bits (83), Expect = 0.003
 Identities = 20/113 (17%), Positives = 45/113 (39%), Gaps = 5/113 (4%)

Query: 28  FKSRLSTLKSIQDALTDVNVN---IVGVYGMGGIGKTTLVKEFARQASEE--KLFDQVVF 82
              R   L+ + DAL          V + G  G GKT+L++E          K       
Sbjct: 2   LVGREEELERLLDALRRARSGGPPSVLLTGPSGTGKTSLLRELLEGLLVAAGKCDQAERN 61

Query: 83  SEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNI 135
              + +  ++++  ++  +L  E     E+  A+   E ++  + ++ +L+ +
Sbjct: 62  PPYAFSQALRELLRQLLRELAAELLLLREALLAALGAELIEGLQDLVELLERL 114

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Length = 154

>gnl|CDD|224391 COG1474, CDC6, Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 2/86 (2%)

Query: 52  VYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAE 111
           +YG  G GKT  VK    +  E     +VV+    +     ++  +I  KLG        
Sbjct: 47  IYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDS 106

Query: 112 SRRA-SRLYERLKKEKMIL-VILDNI 135
           S     RLY+ L K+   + VILD +
Sbjct: 107 SLEILKRLYDNLSKKGKTVIVILDEV 132

Length = 366

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	183
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	99.88
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.86
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.74
PRK00411	394	cdc6 cell division control protein 6; Reviewed	99.52
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	99.49
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	99.43
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	99.42
PF05729	166	NACHT: NACHT domain	99.35
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	99.31
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	99.31
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	99.24
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	99.21
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	99.2
PRK04841	903	transcriptional regulator MalT; Provisional	99.19
PTZ00112	1164	origin recognition complex 1 protein; Provisional	99.16
PLN03025	319	replication factor C subunit; Provisional	99.11
PF13173	128	AAA_14: AAA domain	99.11
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	99.1
PRK12402	337	replication factor C small subunit 2; Reviewed	99.08
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	99.08
PTZ00202	550	tuzin; Provisional	99.07
PRK00440	319	rfc replication factor C small subunit; Reviewed	99.05
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	99.05
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	99.02
COG2256	436	MGS1 ATPase related to the helicase subunit of the	99.01
COG0488	530	Uup ATPase components of ABC transporters with dup	98.98
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	98.96
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	98.94
PRK13342	413	recombination factor protein RarA; Reviewed	98.94
KOG0989	346	consensus Replication factor C, subunit RFC4 [Repl	98.94
cd01128	249	rho_factor Transcription termination factor rho is	98.93
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	98.91
KOG2227	529	consensus Pre-initiation complex, subunit CDC6, AA	98.91
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	98.91
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	98.91
PRK04195	482	replication factor C large subunit; Provisional	98.9
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	98.9
COG0488	530	Uup ATPase components of ABC transporters with dup	98.9
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	98.89
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	98.88
KOG2028	554	consensus ATPase related to the helicase subunit o	98.87
smart00382	148	AAA ATPases associated with a variety of cellular	98.87
PHA02544	316	44 clamp loader, small subunit; Provisional	98.85
PF00004	132	AAA: ATPase family associated with various cellula	98.84
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	98.83
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	98.83
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	98.82
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	98.81
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	98.81
CHL00095	821	clpC Clp protease ATP binding subunit	98.81
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	98.8
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	98.8
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	98.79
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	98.78
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	98.78
PRK05564	313	DNA polymerase III subunit delta'; Validated	98.77
PRK10865	857	protein disaggregation chaperone; Provisional	98.77
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	98.77
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	98.77
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	98.76
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	98.76
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	98.75
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	98.75
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	98.74
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	98.73
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	98.72
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	98.71
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	98.7
PRK07471	365	DNA polymerase III subunit delta'; Validated	98.7
TIGR00767	415	rho transcription termination factor Rho. Members	98.69
PRK07940	394	DNA polymerase III subunit delta'; Validated	98.69
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	98.68
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	98.68
PRK09376	416	rho transcription termination factor Rho; Provisio	98.68
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	98.67
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	98.66
PRK09112	351	DNA polymerase III subunit delta'; Validated	98.65
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	98.65
KOG2543	438	consensus Origin recognition complex, subunit 5 [R	98.65
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	98.64
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	98.63
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	98.62
PRK13341	725	recombination factor protein RarA/unknown domain f	98.62
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	98.62
PRK03992	389	proteasome-activating nucleotidase; Provisional	98.62
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	98.61
PRK06893	229	DNA replication initiation factor; Validated	98.61
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	98.61
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	98.6
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	98.6
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	98.6
PF13177	162	DNA_pol3_delta2: DNA polymerase III, delta subunit	98.59
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	98.59
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	98.58
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	98.58
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	98.58
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	98.57
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	98.57
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	98.57
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	98.55
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	98.55
KOG0062	582	consensus ATPase component of ABC transporters wit	98.55
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	98.54
PRK08727	233	hypothetical protein; Validated	98.54
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	98.54
PRK10536	262	hypothetical protein; Provisional	98.54
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	98.52
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	98.51
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	98.51
COG2884	223	FtsE Predicted ATPase involved in cell division [C	98.5
PRK14971	614	DNA polymerase III subunits gamma and tau; Provisi	98.5
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	98.5
cd03216	163	ABC_Carb_Monos_I This family represents the domain	98.5
KOG0927	614	consensus Predicted transporter (ABC superfamily)	98.49
CHL00181	287	cbbX CbbX; Provisional	98.49
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	98.48
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	98.47
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	98.46
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	98.46
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	98.46
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	98.45
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	98.45
CHL00176	638	ftsH cell division protein; Validated	98.44
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	98.44
COG1373	398	Predicted ATPase (AAA+ superfamily) [General funct	98.44
PRK08181	269	transposase; Validated	98.43
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.43
PRK07399	314	DNA polymerase III subunit delta'; Validated	98.42
COG2812	515	DnaX DNA polymerase III, gamma/tau subunits [DNA r	98.42
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	98.41
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	98.41
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	98.41
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	98.41
cd03246	173	ABCC_Protease_Secretion This family represents the	98.41
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	98.4
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	98.4
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	98.39
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	98.39
PRK12608	380	transcription termination factor Rho; Provisional	98.39
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	98.38
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	98.37
PRK08903	227	DnaA regulatory inactivator Hda; Validated	98.37
PF07693	325	KAP_NTPase: KAP family P-loop domain; InterPro: IP	98.36
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	98.36
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	98.36
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	98.36
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	98.35
PRK10865	857	protein disaggregation chaperone; Provisional	98.35
TIGR02237	209	recomb_radB DNA repair and recombination protein R	98.35
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	98.34
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	98.33
CHL00095	821	clpC Clp protease ATP binding subunit	98.32
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	98.32
KOG1514	767	consensus Origin recognition complex, subunit 1, a	98.31
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	98.3
PRK06526	254	transposase; Provisional	98.3
PRK15064	530	ABC transporter ATP-binding protein; Provisional	98.3
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	98.3
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	98.3
PRK12377	248	putative replication protein; Provisional	98.29
cd03215	182	ABC_Carb_Monos_II This family represents domain II	98.29
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	98.28
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	98.28
PRK08116	268	hypothetical protein; Validated	98.28
PF14516	331	AAA_35: AAA-like domain	98.27
PRK07952	244	DNA replication protein DnaC; Validated	98.27
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	98.27
KOG0727	408	consensus 26S proteasome regulatory complex, ATPas	98.27
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	98.27
PRK11147	635	ABC transporter ATPase component; Reviewed	98.27
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	98.27
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	98.26
PRK04296	190	thymidine kinase; Provisional	98.26
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	98.26
PRK08084	235	DNA replication initiation factor; Provisional	98.26
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	98.25
PRK08058	329	DNA polymerase III subunit delta'; Validated	98.25
COG1484	254	DnaC DNA replication protein [DNA replication, rec	98.25
PRK09183	259	transposase/IS protein; Provisional	98.24
PRK14088	440	dnaA chromosomal replication initiation protein; P	98.24
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	98.24
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	98.24
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	98.23
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.23
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	98.23
PRK14087	450	dnaA chromosomal replication initiation protein; P	98.23
COG3899	849	Predicted ATPase [General function prediction only	98.23
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	98.23
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	98.23
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	98.22
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	98.22
KOG1969	877	consensus DNA replication checkpoint protein CHL12	98.22
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	98.21
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	98.21
KOG0736	953	consensus Peroxisome assembly factor 2 containing	98.21
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	98.21
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	98.21
COG3910	233	Predicted ATPase [General function prediction only	98.21
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	98.2
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	98.2
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	98.19
PRK06067	234	flagellar accessory protein FlaH; Validated	98.19
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	98.19
cd03269	210	ABC_putative_ATPase This subfamily is involved in	98.19
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	98.19
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	98.19
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	98.19
PRK08533	230	flagellar accessory protein FlaH; Reviewed	98.19
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	98.19
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	98.19
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	98.18
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	98.18
PRK08939	306	primosomal protein DnaI; Reviewed	98.18
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	98.18
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	98.18
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	98.17
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	98.17
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	98.17
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	98.17
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	98.16
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	98.16
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	98.15
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	98.15
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	98.15
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	98.15
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	98.14
PRK05642	234	DNA replication initiation factor; Validated	98.14
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	98.14
PRK13537	306	nodulation ABC transporter NodI; Provisional	98.14
CHL00195	489	ycf46 Ycf46; Provisional	98.14
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	98.14
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	98.14
PF02562	205	PhoH: PhoH-like protein; InterPro: IPR003714 PhoH	98.13
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	98.13
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	98.13
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	98.13
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	98.13
PRK14974	336	cell division protein FtsY; Provisional	98.13
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	98.13
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	98.12
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	98.12
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	98.12
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	98.12
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	98.12
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	98.12
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	98.12
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	98.12
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	98.12
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	98.12
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	98.12
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	98.11
cd00561	159	CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B	98.11
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	98.11
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	98.11
PRK11147	635	ABC transporter ATPase component; Reviewed	98.1
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	98.1
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	98.1
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	98.1
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	98.1
KOG0726	440	consensus 26S proteasome regulatory complex, ATPas	98.1
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	98.1
PRK13409	590	putative ATPase RIL; Provisional	98.1
KOG0927	614	consensus Predicted transporter (ABC superfamily)	98.1
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	98.1
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	98.09
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	98.09
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	98.09
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	98.09
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	98.09
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	98.09
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	98.09
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	98.09
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	98.09
cd00983	325	recA RecA is a bacterial enzyme which has roles in	98.08
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	98.08
PRK10908	222	cell division protein FtsE; Provisional	98.08
PRK06921	266	hypothetical protein; Provisional	98.08
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	98.08
COG1066	456	Sms Predicted ATP-dependent serine protease [Postt	98.08
KOG2228	408	consensus Origin recognition complex, subunit 4 [R	98.08
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	98.07
PRK13409	590	putative ATPase RIL; Provisional	98.07
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	98.07
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	98.07
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	98.07
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	98.07
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	98.07
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	98.07
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	98.07
PRK14086	617	dnaA chromosomal replication initiation protein; P	98.07
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	98.07
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	98.07
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.07
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	98.07
PRK07261	171	topology modulation protein; Provisional	98.07
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	98.07
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	98.07
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	98.06
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.06
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	98.06
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	98.06
PRK09354	349	recA recombinase A; Provisional	98.06
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	98.06
KOG0738	491	consensus AAA+-type ATPase [Posttranslational modi	98.06
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	98.06
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	98.06
PRK13546	264	teichoic acids export protein ATP-binding subunit;	98.06
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	98.06
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	98.06
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	98.06
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	98.06
PRK05707	328	DNA polymerase III subunit delta'; Validated	98.05
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	98.05
PRK00149	450	dnaA chromosomal replication initiation protein; R	98.05
PF13481	193	AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.	98.05
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	98.05
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	98.05
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	98.05
cd01394	218	radB RadB. The archaeal protein radB shares simila	98.05
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	98.05
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	98.05
PF05970	364	PIF1: PIF1-like helicase; InterPro: IPR010285 This	98.05
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.05
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	98.04
COG2607	287	Predicted ATPase (AAA+ superfamily) [General funct	98.04
PRK05541	176	adenylylsulfate kinase; Provisional	98.04
KOG0731	774	consensus AAA+-type ATPase containing the peptidas	98.04
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	98.04
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	98.04
PRK13536	340	nodulation factor exporter subunit NodI; Provision	98.04
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.04
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	98.04
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	98.03
PLN03073	718	ABC transporter F family; Provisional	98.03
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	98.03
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	98.03
PRK15064	530	ABC transporter ATP-binding protein; Provisional	98.03
PF14532	138	Sigma54_activ_2: Sigma-54 interaction domain; PDB:	98.03
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	98.03
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	98.03
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	98.03
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	98.03
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	98.02
KOG0729	435	consensus 26S proteasome regulatory complex, ATPas	98.02
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	98.02
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	98.02
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	98.02
PRK00771	437	signal recognition particle protein Srp54; Provisi	98.02
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	98.02
PRK06696	223	uridine kinase; Validated	98.02
PRK06871	325	DNA polymerase III subunit delta'; Validated	98.02
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	98.02
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	98.02
PLN03073	718	ABC transporter F family; Provisional	98.02
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	98.02
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	98.02
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	98.02
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	98.02
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	98.02
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	98.01
COG4133	209	CcmA ABC-type transport system involved in cytochr	98.01
COG1127	263	Ttg2A ABC-type transport system involved in resist	98.01
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	98.01
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	98.01
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	98.01
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	98.01
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	98.01
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	98.01
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	98.01
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	98.0
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	98.0
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	98.0
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	98.0
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.0
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	98.0
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	98.0
PF08423	256	Rad51: Rad51; InterPro: IPR013632 This domain is f	98.0
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	98.0
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	98.0
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	98.0
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.99
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	97.99
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	97.99
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	97.99
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	97.99
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	97.98
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	97.98
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	97.98
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	97.98
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	97.98
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	97.98
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	97.97
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	97.97
PRK08769	319	DNA polymerase III subunit delta'; Validated	97.97
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	97.97
PRK15429	686	formate hydrogenlyase transcriptional activator Fh	97.97
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	97.97
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	97.97
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	97.97
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	97.97
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	97.97
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	97.97
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	97.97
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	97.96
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	97.96
KOG0728	404	consensus 26S proteasome regulatory complex, ATPas	97.96
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	97.96
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	97.96
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	97.95
TIGR00708	173	cobA cob(I)alamin adenosyltransferase. Alternate n	97.95
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	97.95
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	97.95
COG1123	539	ATPase components of various ABC-type transport sy	97.95
PRK11608	326	pspF phage shock protein operon transcriptional ac	97.95
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	97.94
PRK07993	334	DNA polymerase III subunit delta'; Validated	97.94
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	97.94
PRK06835	329	DNA replication protein DnaC; Validated	97.94
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	97.94
COG3854	308	SpoIIIAA ncharacterized protein conserved in bacte	97.94
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	97.94
PRK10938	490	putative molybdenum transport ATP-binding protein	97.94
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	97.94
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	97.94
PRK10261	623	glutathione transporter ATP-binding protein; Provi	97.93
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	97.93
COG4988	559	CydD ABC-type transport system involved in cytochr	97.93
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	97.93
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	97.93
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.93
PRK15455	644	PrkA family serine protein kinase; Provisional	97.93
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	97.93
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	97.93
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	97.93
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	97.93
CHL00206	2281	ycf2 Ycf2; Provisional	97.93
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	97.93
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	97.92
KOG0652	424	consensus 26S proteasome regulatory complex, ATPas	97.92
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	97.92
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	97.92
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	97.92
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	97.92
PRK12422	445	chromosomal replication initiation protein; Provis	97.91
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	97.91
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	97.91
COG4178	604	ABC-type uncharacterized transport system, permeas	97.91
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	97.9
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	97.9
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	97.9
TIGR02238	313	recomb_DMC1 meiotic recombinase Dmc1. This model d	97.9
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	97.89
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	97.89
PRK05022	509	anaerobic nitric oxide reductase transcription reg	97.89
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	97.89
PRK10522	547	multidrug transporter membrane component/ATP-bindi	97.89
PRK11823	446	DNA repair protein RadA; Provisional	97.89
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	97.89
cd03299	235	ABC_ModC_like Archeal protein closely related to M	97.88
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.88
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	97.88
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	97.88
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	97.88
TIGR02974	329	phageshock_pspF psp operon transcriptional activat	97.88
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	97.88
PRK04328	249	hypothetical protein; Provisional	97.87
PRK08118	167	topology modulation protein; Reviewed	97.87
cd00046	144	DEXDc DEAD-like helicases superfamily. A diverse f	97.87
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	97.87
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	97.87
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	97.87
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	97.87
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	97.86
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	97.86
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	97.86
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	97.86
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	97.86
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	97.85
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	97.85
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	97.85
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.85
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	97.84
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	97.84
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	97.84
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	97.84
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	97.84
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.84
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	97.84
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	97.84
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	97.84
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	97.84
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	97.84
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	97.83
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	97.83
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	97.83
PRK08699	325	DNA polymerase III subunit delta'; Validated	97.83
KOG0651	388	consensus 26S proteasome regulatory complex, ATPas	97.83
COG0593	408	DnaA ATPase involved in DNA replication initiation	97.83
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	97.83
PRK10867	433	signal recognition particle protein; Provisional	97.83

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=99.88  E-value=3.8e-22  Score=154.10  Aligned_cols=139  Identities=34%  Similarity=0.541  Sum_probs=106.1

Q ss_pred             hHHHHHHHHHHhcc--CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCch-
Q 035585           31 RLSTLKSIQDALTD--VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFS-  107 (183)
Q Consensus        31 R~~~l~~l~~~l~~--~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~-  107 (183)
                      |+.++++|.+.|..  .+.++++|+|++|+|||+||..++++...+..|+.++|++++.......+...++..+..... 
T Consensus         1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~   80 (287)
T PF00931_consen    1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS   80 (287)
T ss_dssp             -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred             CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence            78999999999986  788999999999999999999999886655568899999999888888899999999977632 


Q ss_pred             ---hHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcccccccCcCCCCCCCCcEEEEEecChHHHhhc
Q 035585          108 ---EEAESRRASRLYERLKKEKMILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVLLNM  170 (183)
Q Consensus       108 ---~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~~~~l~~~~~~~~~~~~iiitsr~~~~~~~~  170 (183)
                         ..........+.+.+. ++++||||||+++...++.+...+.....+++||+|||+..+....
T Consensus        81 ~~~~~~~~~~~~~l~~~L~-~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~  145 (287)
T PF00931_consen   81 ISDPKDIEELQDQLRELLK-DKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSL  145 (287)
T ss_dssp             SSCCSSHHHHHHHHHHHHC-CTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTH
T ss_pred             cccccccccccccchhhhc-cccceeeeeeeccccccccccccccccccccccccccccccccccc
Confidence               2233445555666665 7799999999999988888877777777799999999999876643

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.86  E-value=1.1e-20  Score=163.55  Aligned_cols=155  Identities=34%  Similarity=0.516  Sum_probs=129.4

Q ss_pred             cCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHh-hhhcccceEEEEecCCcCHHHHHHHHH
Q 035585           21 SNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQAS-EEKLFDQVVFSEVSQTPDIKKIHGEIA   99 (183)
Q Consensus        21 ~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~   99 (183)
                      |...... +|.+..++.+.+.|-.+..++++|+|++|+|||||+++++++.. ....|+.++|+.++++.+...+..+|+
T Consensus       154 ~~~~~~~-VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il  232 (889)
T KOG4658|consen  154 PIQSESD-VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTIL  232 (889)
T ss_pred             CCCcccc-ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHH
Confidence            3333334 99999999999999877779999999999999999999999998 667899999999999999999999999


Q ss_pred             HHhCCCchhH---HHHHHHHHHHHHHhcCCeEEEEEeCCCCcccccccCcCCCCCCCCcEEEEEecChHHHhh-cCCCCc
Q 035585          100 EKLGLEFSEE---AESRRASRLYERLKKEKMILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVLLN-MSLCRS  175 (183)
Q Consensus       100 ~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~~~~l~~~~~~~~~~~~iiitsr~~~~~~~-~~~~~~  175 (183)
                      ..++...+..   ........+++.+. .++++||+||+|+..+|+.+..+++....||+|++|||+.++... +++...
T Consensus       233 ~~l~~~~~~~~~~~~~~~~~~i~~~L~-~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~  311 (889)
T KOG4658|consen  233 ERLGLLDEEWEDKEEDELASKLLNLLE-GKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYP  311 (889)
T ss_pred             HHhccCCcccchhhHHHHHHHHHHHhc-cCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcc
Confidence            9887643332   22334444555554 999999999999999999999999999889999999999999997 665444


Q ss_pred             ch
Q 035585          176 EE  177 (183)
Q Consensus       176 ~~  177 (183)
                      ++
T Consensus       312 ~~  313 (889)
T KOG4658|consen  312 IE  313 (889)
T ss_pred             cc
Confidence            43

>PLN03210 Resistant to P

Probab=99.74  E-value=2.8e-17  Score=147.42  Aligned_cols=151  Identities=19%  Similarity=0.298  Sum_probs=103.6

Q ss_pred             hhhcCCCcccccchHHHHHHHHHHhc--cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEe---cCCc---
Q 035585           18 WLKSNKGYEAFKSRLSTLKSIQDALT--DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEV---SQTP---   89 (183)
Q Consensus        18 ~~~~~~~~~~~~gR~~~l~~l~~~l~--~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~---~~~~---   89 (183)
                      ...++....+++||++.++.+..++.  ....++++|+|++|+||||||+.+++++...  |.+.+|++.   ....   
T Consensus       176 ~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~--F~g~vfv~~~~v~~~~~~~  253 (1153)
T PLN03210        176 NLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQ--FQSSVFIDRAFISKSMEIY  253 (1153)
T ss_pred             ccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhc--CCeEEEeeccccccchhhc
Confidence            34456677889999999999998875  5567899999999999999999999988765  666666532   1000   


Q ss_pred             --------C-HHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcccccccCcCCCCCCCCcEEEEE
Q 035585           90 --------D-IKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKYLDLETVGIPFGDDHRGCKLLLT  160 (183)
Q Consensus        90 --------~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~~~~l~~~~~~~~~~~~iiit  160 (183)
                              . ...+...++..+........  .....+.+.+. +++++|||||+|+..+++.+.....+..+|++||||
T Consensus       254 ~~~~~~~~~~~~~l~~~~l~~il~~~~~~~--~~~~~~~~~L~-~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiT  330 (1153)
T PLN03210        254 SSANPDDYNMKLHLQRAFLSEILDKKDIKI--YHLGAMEERLK-HRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVI  330 (1153)
T ss_pred             ccccccccchhHHHHHHHHHHHhCCCCccc--CCHHHHHHHHh-CCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEE
Confidence                    0 11222333333321110000  00123334444 899999999999988888886666667789999999


Q ss_pred             ecChHHHhhcCCC
Q 035585          161 ARDCNVLLNMSLC  173 (183)
Q Consensus       161 sr~~~~~~~~~~~  173 (183)
                      ||+..++...+..
T Consensus       331 Trd~~vl~~~~~~  343 (1153)
T PLN03210        331 TKDKHFLRAHGID  343 (1153)
T ss_pred             eCcHHHHHhcCCC
Confidence            9999998765443

syringae 6; Provisional

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=99.52  E-value=3.3e-13  Score=108.82  Aligned_cols=119  Identities=23%  Similarity=0.191  Sum_probs=87.1

Q ss_pred             cCCCcccccchHHHHHHHHHHhc----cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHH
Q 035585           21 SNKGYEAFKSRLSTLKSIQDALT----DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHG   96 (183)
Q Consensus        21 ~~~~~~~~~gR~~~l~~l~~~l~----~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (183)
                      |...|..|.||+++++.|...+.    +..++.+.|+|++|+|||++++.+++.+........++|+++....+...++.
T Consensus        25 ~~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~  104 (394)
T PRK00411         25 PDYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFS  104 (394)
T ss_pred             CCCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHH
Confidence            34456689999999999999874    34567889999999999999999999887653223467888887777788888


Q ss_pred             HHHHHhCC-Cch--hHHHHHHHHHHHHHHhc-CCeEEEEEeCCCCcc
Q 035585           97 EIAEKLGL-EFS--EEAESRRASRLYERLKK-EKMILVILDNIWKYL  139 (183)
Q Consensus        97 ~i~~~l~~-~~~--~~~~~~~~~~~~~~~~~-~~~~llvlD~~~~~~  139 (183)
                      .++.++.. ..+  .....+....+...+.. ++..+|||||+|...
T Consensus       105 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~  151 (394)
T PRK00411        105 EIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLF  151 (394)
T ss_pred             HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhh
Confidence            99888864 221  11223344455555543 567899999998764

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=99.49  E-value=1.3e-12  Score=104.35  Aligned_cols=115  Identities=23%  Similarity=0.291  Sum_probs=83.2

Q ss_pred             CcccccchHHHHHHHHHHhc----cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcc----cceEEEEecCCcCHHHHH
Q 035585           24 GYEAFKSRLSTLKSIQDALT----DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLF----DQVVFSEVSQTPDIKKIH   95 (183)
Q Consensus        24 ~~~~~~gR~~~l~~l~~~l~----~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~   95 (183)
                      .|..|.||+++++.|..++.    +...+.+.|+|++|+|||++++.+++.+.....-    -.++|+++........++
T Consensus        13 ~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~   92 (365)
T TIGR02928        13 VPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVL   92 (365)
T ss_pred             CCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHH
Confidence            34579999999999999876    3455789999999999999999999887643111    246788887777777888


Q ss_pred             HHHHHHh---CCCchh--HHHHHHHHHHHHHHh-cCCeEEEEEeCCCCc
Q 035585           96 GEIAEKL---GLEFSE--EAESRRASRLYERLK-KEKMILVILDNIWKY  138 (183)
Q Consensus        96 ~~i~~~l---~~~~~~--~~~~~~~~~~~~~~~-~~~~~llvlD~~~~~  138 (183)
                      ..++..+   +...+.  ....+....+...+. .+++.+|||||+|.+
T Consensus        93 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L  141 (365)
T TIGR02928        93 VELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYL  141 (365)
T ss_pred             HHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhh
Confidence            8888888   332221  122333445555553 356889999999977

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=6.3e-12  Score=100.02  Aligned_cols=142  Identities=21%  Similarity=0.297  Sum_probs=103.0

Q ss_pred             cccchHHHHHHHHHHhc----cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHh
Q 035585           27 AFKSRLSTLKSIQDALT----DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKL  102 (183)
Q Consensus        27 ~~~gR~~~l~~l~~~l~----~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l  102 (183)
                      .+.+|+++++++...+.    +..+..+.|+|++|+|||+.++.+..++........++|+||....+...++..+++.+
T Consensus        18 ~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~   97 (366)
T COG1474          18 ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKL   97 (366)
T ss_pred             cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHc
Confidence            38899999999998876    56666799999999999999999999998864434489999999999999999999988


Q ss_pred             C-CCchhHHHHHHHHHHHHHHhc-CCeEEEEEeCCCCccccc--ccCcCCCC---CCCCcEEEEEecChHHHh
Q 035585          103 G-LEFSEEAESRRASRLYERLKK-EKMILVILDNIWKYLDLE--TVGIPFGD---DHRGCKLLLTARDCNVLL  168 (183)
Q Consensus       103 ~-~~~~~~~~~~~~~~~~~~~~~-~~~~llvlD~~~~~~~~~--~l~~~~~~---~~~~~~iiitsr~~~~~~  168 (183)
                      + .+..+....+....+.+.+.. ++.+++||||++.+..-.  .+...+..   ......+|.++.+..+..
T Consensus        98 ~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~  170 (366)
T COG1474          98 GKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLD  170 (366)
T ss_pred             CCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHH
Confidence            5 222234445555666666643 789999999999774332  22222222   222234666666666544

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=99.42  E-value=1.1e-12  Score=89.86  Aligned_cols=116  Identities=25%  Similarity=0.367  Sum_probs=81.6

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhc---ccceEEEEecCCcCHHHHHHHHHHHhCCCchh-HHHHHHHHHHHHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKL---FDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSE-EAESRRASRLYER  121 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~  121 (183)
                      +.+.+.|+|++|+|||++++.+...+.....   ...++|++++...+...++..++..+...... .........+...
T Consensus         3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~   82 (131)
T PF13401_consen    3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA   82 (131)
T ss_dssp             ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred             CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence            3578999999999999999999998865311   23577999988888999999999999877666 4445555677777


Q ss_pred             HhcCCeEEEEEeCCCCc-c--cccccCcCCCCCCCCcEEEEEecC
Q 035585          122 LKKEKMILVILDNIWKY-L--DLETVGIPFGDDHRGCKLLLTARD  163 (183)
Q Consensus       122 ~~~~~~~llvlD~~~~~-~--~~~~l~~~~~~~~~~~~iiitsr~  163 (183)
                      +...+..+|||||+|.+ .  .++.+.. +.+ ..+..++++.++
T Consensus        83 l~~~~~~~lviDe~~~l~~~~~l~~l~~-l~~-~~~~~vvl~G~~  125 (131)
T PF13401_consen   83 LDRRRVVLLVIDEADHLFSDEFLEFLRS-LLN-ESNIKVVLVGTP  125 (131)
T ss_dssp             HHHCTEEEEEEETTHHHHTHHHHHHHHH-HTC-SCBEEEEEEESS
T ss_pred             HHhcCCeEEEEeChHhcCCHHHHHHHHH-HHh-CCCCeEEEEECh
Confidence            77677789999999986 3  1333322 222 567778888876

>PF05729 NACHT: NACHT domain

Probab=99.35  E-value=7.4e-12  Score=88.72  Aligned_cols=114  Identities=25%  Similarity=0.326  Sum_probs=70.5

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHhhhhcc----cceEEEEecCCcCH---HHHHHHHHHHhCCCchhHHHHHHHHHHHH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQASEEKLF----DQVVFSEVSQTPDI---KKIHGEIAEKLGLEFSEEAESRRASRLYE  120 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~----~~~~~~~~~~~~~~---~~~~~~i~~~l~~~~~~~~~~~~~~~~~~  120 (183)
                      ++++|+|++|+|||++++.++..+......    ..++|.+.......   ..+...+...+.........     .+..
T Consensus         1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-----~~~~   75 (166)
T PF05729_consen    1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEE-----LLQE   75 (166)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHH-----HHHH
Confidence            578999999999999999999998776432    24556555543322   13334444433322111111     2233


Q ss_pred             HHhcCCeEEEEEeCCCCccccc---------c-cCcCCCC-CCCCcEEEEEecChHH
Q 035585          121 RLKKEKMILVILDNIWKYLDLE---------T-VGIPFGD-DHRGCKLLLTARDCNV  166 (183)
Q Consensus       121 ~~~~~~~~llvlD~~~~~~~~~---------~-l~~~~~~-~~~~~~iiitsr~~~~  166 (183)
                      .....++++||||++|+.....         . +...+.. ..+++++++|+|....
T Consensus        76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~  132 (166)
T PF05729_consen   76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAF  132 (166)
T ss_pred             HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChH
Confidence            3345889999999998774311         1 1122222 3668999999999887

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=99.31  E-value=2.1e-11  Score=84.11  Aligned_cols=123  Identities=16%  Similarity=0.150  Sum_probs=74.9

Q ss_pred             cchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchh
Q 035585           29 KSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSE  108 (183)
Q Consensus        29 ~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~  108 (183)
                      .+|+.++..+...+.....+.+.|+|++|+|||++++.+++.+...  ...++++++............+...       
T Consensus         1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~-------   71 (151)
T cd00009           1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLLEGLVVAELFGHF-------   71 (151)
T ss_pred             CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhhhhhHHHHHhhhh-------
Confidence            3688899999998876667899999999999999999999988633  3346666655433322111111000       


Q ss_pred             HHHHHHHHHHHHHHhcCCeEEEEEeCCCCc--ccccccC---cCCCC---CCCCcEEEEEecChH
Q 035585          109 EAESRRASRLYERLKKEKMILVILDNIWKY--LDLETVG---IPFGD---DHRGCKLLLTARDCN  165 (183)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~llvlD~~~~~--~~~~~l~---~~~~~---~~~~~~iiitsr~~~  165 (183)
                           ............++.+|++||++.+  .....+.   .....   ...++.+|+++.+..
T Consensus        72 -----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~  131 (151)
T cd00009          72 -----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL  131 (151)
T ss_pred             -----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence                 0111111222367889999999865  1111221   22211   135778888888654

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=99.31  E-value=4.5e-12  Score=94.58  Aligned_cols=110  Identities=24%  Similarity=0.366  Sum_probs=65.1

Q ss_pred             ccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHH----------
Q 035585           28 FKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGE----------   97 (183)
Q Consensus        28 ~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------   97 (183)
                      |+||+++++.|.+++.+.+.+.++|+|+.|+|||+|++.+.+.......  .++|+..............          
T Consensus         1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~--~~~y~~~~~~~~~~~~~~~~~~~~~~~~l   78 (234)
T PF01637_consen    1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKGY--KVVYIDFLEESNESSLRSFIEETSLADEL   78 (234)
T ss_dssp             S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--EE--CCCHHCCTTBSHHHHHHHHHHHHHHHCHC
T ss_pred             CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCC--cEEEEecccchhhhHHHHHHHHHHHHHHH
Confidence            7899999999999998777789999999999999999999998855322  3444444333222111111          


Q ss_pred             ---HHHHhCCC-c------hhHHHHHHHHHHHHHHhc-CCeEEEEEeCCCCcc
Q 035585           98 ---IAEKLGLE-F------SEEAESRRASRLYERLKK-EKMILVILDNIWKYL  139 (183)
Q Consensus        98 ---i~~~l~~~-~------~~~~~~~~~~~~~~~~~~-~~~~llvlD~~~~~~  139 (183)
                         +...+... .      ...........+...+.. +++++|||||++...
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~  131 (234)
T PF01637_consen   79 SEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLA  131 (234)
T ss_dssp             HHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGG
T ss_pred             HHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHh
Confidence               11111110 0      112333445566666653 345999999998776

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=99.24  E-value=7.1e-11  Score=85.30  Aligned_cols=60  Identities=20%  Similarity=0.321  Sum_probs=39.6

Q ss_pred             cccchHHHHHHHHHHhc---cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC
Q 035585           27 AFKSRLSTLKSIQDALT---DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT   88 (183)
Q Consensus        27 ~~~gR~~~l~~l~~~l~---~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~   88 (183)
                      .|+||+++++.+...+.   ....+.++|+|++|+|||+|++.+...+.....+  ++..++...
T Consensus         1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~--~~~~~~~~~   63 (185)
T PF13191_consen    1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGY--VISINCDDS   63 (185)
T ss_dssp             --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT----EEEEEEETT
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCE--EEEEEEecc
Confidence            38999999999999983   5567899999999999999999999988876222  444444444

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=99.21  E-value=3.8e-10  Score=86.41  Aligned_cols=93  Identities=20%  Similarity=0.304  Sum_probs=59.8

Q ss_pred             cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHH----H
Q 035585           44 DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRL----Y  119 (183)
Q Consensus        44 ~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~----~  119 (183)
                      ..+.+.++|+|++|+||||+++.++..+.....  ...++ .....+..+++..++..++..............+    .
T Consensus        40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~--~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~  116 (269)
T TIGR03015        40 SQREGFILITGEVGAGKTTLIRNLLKRLDQERV--VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLI  116 (269)
T ss_pred             hcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCCe--EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence            344578999999999999999999888764211  11222 2333455678888888887654332222222222    2


Q ss_pred             HHHhcCCeEEEEEeCCCCcc
Q 035585          120 ERLKKEKMILVILDNIWKYL  139 (183)
Q Consensus       120 ~~~~~~~~~llvlD~~~~~~  139 (183)
                      .....+++.+||+||+|.+.
T Consensus       117 ~~~~~~~~~vliiDe~~~l~  136 (269)
T TIGR03015       117 EQFAAGKRALLVVDEAQNLT  136 (269)
T ss_pred             HHHhCCCCeEEEEECcccCC
Confidence            23345788999999999764

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=99.20  E-value=2.2e-10  Score=87.92  Aligned_cols=117  Identities=16%  Similarity=0.303  Sum_probs=88.1

Q ss_pred             CCCcccccchHHHHHHHHHHhc---cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhh----cccceEEEEecCCcCHHHH
Q 035585           22 NKGYEAFKSRLSTLKSIQDALT---DVNVNIVGVYGMGGIGKTTLVKEFARQASEEK----LFDQVVFSEVSQTPDIKKI   94 (183)
Q Consensus        22 ~~~~~~~~gR~~~l~~l~~~l~---~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~   94 (183)
                      .+.=.++-.-.+.++.|.+.+.   ..+.+.++|+|++|.|||++++.+...+....    ....++++.++..++...+
T Consensus        33 ~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~  112 (302)
T PF05621_consen   33 ADRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRF  112 (302)
T ss_pred             cCCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHH
Confidence            3344444445666777777665   56778999999999999999999988775431    1125889999999999999


Q ss_pred             HHHHHHHhCCCchhH-HHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585           95 HGEIAEKLGLEFSEE-AESRRASRLYERLKKEKMILVILDNIWKY  138 (183)
Q Consensus        95 ~~~i~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~llvlD~~~~~  138 (183)
                      +..|++.++.+.... ............++.-+.-+|||||+++.
T Consensus       113 Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~l  157 (302)
T PF05621_consen  113 YSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNL  157 (302)
T ss_pred             HHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHH
Confidence            999999999887553 33333445556667678999999999976

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.19  E-value=2e-10  Score=101.38  Aligned_cols=138  Identities=15%  Similarity=0.199  Sum_probs=92.0

Q ss_pred             hhhcCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEec-CCcCHHHHHH
Q 035585           18 WLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVS-QTPDIKKIHG   96 (183)
Q Consensus        18 ~~~~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   96 (183)
                      ...||+.+..++.|.+.++.|...   ...++++|+||+|.||||++.++....      ..+.|+++. .+.+...++.
T Consensus         6 k~~~p~~~~~~~~R~rl~~~l~~~---~~~~~~~v~apaG~GKTtl~~~~~~~~------~~~~w~~l~~~d~~~~~f~~   76 (903)
T PRK04841          6 KLSRPVRLHNTVVRERLLAKLSGA---NNYRLVLVTSPAGYGKTTLISQWAAGK------NNLGWYSLDESDNQPERFAS   76 (903)
T ss_pred             ccCCCCCccccCcchHHHHHHhcc---cCCCeEEEECCCCCCHHHHHHHHHHhC------CCeEEEecCcccCCHHHHHH
Confidence            345777888999999998888653   456899999999999999999988531      258899886 4455566777


Q ss_pred             HHHHHhCCCchh----H----------HHHHHHHHHHHHHhc-CCeEEEEEeCCCCccc--cc-ccCcCCCCCCCCcEEE
Q 035585           97 EIAEKLGLEFSE----E----------AESRRASRLYERLKK-EKMILVILDNIWKYLD--LE-TVGIPFGDDHRGCKLL  158 (183)
Q Consensus        97 ~i~~~l~~~~~~----~----------~~~~~~~~~~~~~~~-~~~~llvlD~~~~~~~--~~-~l~~~~~~~~~~~~ii  158 (183)
                      .++..+....+.    .          ........+...+.. +.+++|||||++..++  .. .+...+.....+.+++
T Consensus        77 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv  156 (903)
T PRK04841         77 YLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLV  156 (903)
T ss_pred             HHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEE
Confidence            776666311111    0          111223344444443 7899999999987642  12 2322333345577888


Q ss_pred             EEecCh
Q 035585          159 LTARDC  164 (183)
Q Consensus       159 itsr~~  164 (183)
                      +|||..
T Consensus       157 ~~sR~~  162 (903)
T PRK04841        157 VLSRNL  162 (903)
T ss_pred             EEeCCC
Confidence            999974

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=99.16  E-value=7.6e-10  Score=95.09  Aligned_cols=119  Identities=18%  Similarity=0.133  Sum_probs=82.5

Q ss_pred             cCCCcccccchHHHHHHHHHHhc----cC-CccEEEEEeCCCCcHHHHHHHHHhHHhhhh----cc-cceEEEEecCCcC
Q 035585           21 SNKGYEAFKSRLSTLKSIQDALT----DV-NVNIVGVYGMGGIGKTTLVKEFARQASEEK----LF-DQVVFSEVSQTPD   90 (183)
Q Consensus        21 ~~~~~~~~~gR~~~l~~l~~~l~----~~-~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~----~~-~~~~~~~~~~~~~   90 (183)
                      +---|..+.+|++|++.|...|.    .. +..++.|+|++|+|||++++.+..++....    .. ..+++++|.....
T Consensus       750 ~DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lst  829 (1164)
T PTZ00112        750 LDVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVH  829 (1164)
T ss_pred             cccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCC
Confidence            33445678999999999998876    22 234567999999999999999998885421    11 2367889888777


Q ss_pred             HHHHHHHHHHHhCCCchh--HHHHHHHHHHHHHHhc--CCeEEEEEeCCCCcc
Q 035585           91 IKKIHGEIAEKLGLEFSE--EAESRRASRLYERLKK--EKMILVILDNIWKYL  139 (183)
Q Consensus        91 ~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~~~~--~~~~llvlD~~~~~~  139 (183)
                      ...++..|..++....+.  ......+..++..+..  ....+|||||+|.+.
T Consensus       830 p~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~  882 (1164)
T PTZ00112        830 PNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLI  882 (1164)
T ss_pred             HHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhC
Confidence            788888888888433332  1223344555554422  335699999999664

>PLN03025 replication factor C subunit; Provisional

Probab=99.11  E-value=4.2e-10  Score=88.46  Aligned_cols=134  Identities=15%  Similarity=0.095  Sum_probs=80.0

Q ss_pred             hhhhcCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHH
Q 035585           17 VWLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHG   96 (183)
Q Consensus        17 ~~~~~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (183)
                      .....|.....++|....+..|..++.+.+.+.+.++|++|+||||++..+++.+....+...++-++.+...... ..+
T Consensus         4 ~~kyrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~-~vr   82 (319)
T PLN03025          4 VEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGID-VVR   82 (319)
T ss_pred             hhhcCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHH-HHH
Confidence            3445677777889999999999988887777778999999999999999999887543211223333333222211 111


Q ss_pred             HHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecCh
Q 035585           97 EIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDC  164 (183)
Q Consensus        97 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~  164 (183)
                      .+...+.             .........+..+++|||+|.+.  ....+...+......+++++++...
T Consensus        83 ~~i~~~~-------------~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~  139 (319)
T PLN03025         83 NKIKMFA-------------QKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTS  139 (319)
T ss_pred             HHHHHHH-------------hccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCc
Confidence            1111100             00000112457899999999774  2334434343334566777777543

>PF13173 AAA_14: AAA domain

Probab=99.11  E-value=2.3e-10  Score=78.26  Aligned_cols=103  Identities=21%  Similarity=0.281  Sum_probs=70.5

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCC
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEK  126 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~  126 (183)
                      .++++|.|+.|+||||++++++..+..   ...++|+++..........                ......+.+.. ..+
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~~~~---~~~~~yi~~~~~~~~~~~~----------------~~~~~~~~~~~-~~~   61 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKDLLP---PENILYINFDDPRDRRLAD----------------PDLLEYFLELI-KPG   61 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhcc---cccceeeccCCHHHHHHhh----------------hhhHHHHHHhh-ccC
Confidence            368999999999999999999987761   3446777766543311000                00111222222 247


Q ss_pred             eEEEEEeCCCCcccccccCcCCCCCCCCcEEEEEecChHHHhh
Q 035585          127 MILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVLLN  169 (183)
Q Consensus       127 ~~llvlD~~~~~~~~~~l~~~~~~~~~~~~iiitsr~~~~~~~  169 (183)
                      ..+|+|||++...+|......+.+..+..++++|+........
T Consensus        62 ~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~  104 (128)
T PF13173_consen   62 KKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSK  104 (128)
T ss_pred             CcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhh
Confidence            8899999999998887777777666667889999998877653

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=99.10  E-value=7e-10  Score=94.27  Aligned_cols=147  Identities=14%  Similarity=0.207  Sum_probs=84.0

Q ss_pred             hhhcCCCcccccchHHHHHHHHHHhccCC-ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHH
Q 035585           18 WLKSNKGYEAFKSRLSTLKSIQDALTDVN-VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHG   96 (183)
Q Consensus        18 ~~~~~~~~~~~~gR~~~l~~l~~~l~~~~-~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (183)
                      ....|.....++|.+..++.|.+++.+.+ .+.++++|+.|+||||+++.+.+.+........   ..|........+..
T Consensus         8 rKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~---~PCG~C~sCr~I~~   84 (830)
T PRK07003          8 RKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTS---QPCGVCRACREIDE   84 (830)
T ss_pred             HHhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCC---CCCcccHHHHHHhc
Confidence            34566777889999999999999988655 456789999999999999999987753211100   00000000000000


Q ss_pred             H-HHHHhCCCchhHHHHHHHHHHHHHH----hcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecChHHH
Q 035585           97 E-IAEKLGLEFSEEAESRRASRLYERL----KKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDCNVL  167 (183)
Q Consensus        97 ~-i~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~~~~  167 (183)
                      . ..+-+..........+.++.+++..    ...+..++||||+|.+.  .++.|+..+.....++++|++|.+.+-+
T Consensus        85 G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KI  162 (830)
T PRK07003         85 GRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKI  162 (830)
T ss_pred             CCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhc
Confidence            0 0000000000000011122222222    12456799999999875  3666767666666688888888876543

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=99.08  E-value=1e-09  Score=86.64  Aligned_cols=71  Identities=18%  Similarity=0.110  Sum_probs=53.1

Q ss_pred             hhhhhcCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEec
Q 035585           16 EVWLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVS   86 (183)
Q Consensus        16 ~~~~~~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~   86 (183)
                      +.....|.....++|++...+.+..++.+...+.+.++||+|+|||++|+.+++.+.........+++++.
T Consensus         5 w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~   75 (337)
T PRK12402          5 WTEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVA   75 (337)
T ss_pred             hHHhhCCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechh
Confidence            33444566678899999999999999887666678999999999999999999887543111234455543

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=99.08  E-value=1.5e-09  Score=92.42  Aligned_cols=143  Identities=17%  Similarity=0.198  Sum_probs=100.4

Q ss_pred             hhhhcCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC-CcCHHHHH
Q 035585           17 VWLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ-TPDIKKIH   95 (183)
Q Consensus        17 ~~~~~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   95 (183)
                      ....||..+..++.|.+.++.|.+.   ...+.++|..|.|.|||||+.++......   ...+.|+++.. +.+...++
T Consensus        10 sk~~~P~~~~~~v~R~rL~~~L~~~---~~~RL~li~APAGfGKttl~aq~~~~~~~---~~~v~Wlslde~dndp~rF~   83 (894)
T COG2909          10 SKLVRPVRPDNYVVRPRLLDRLRRA---NDYRLILISAPAGFGKTTLLAQWRELAAD---GAAVAWLSLDESDNDPARFL   83 (894)
T ss_pred             cccCCCCCcccccccHHHHHHHhcC---CCceEEEEeCCCCCcHHHHHHHHHHhcCc---ccceeEeecCCccCCHHHHH
Confidence            3344566688889999988888774   46799999999999999999999883332   34589998874 46788899


Q ss_pred             HHHHHHhCCCchhHHHHH--------------HHHHHHHHHhc-CCeEEEEEeCCCCcc--c-ccccCcCCCCCCCCcEE
Q 035585           96 GEIAEKLGLEFSEEAESR--------------RASRLYERLKK-EKMILVILDNIWKYL--D-LETVGIPFGDDHRGCKL  157 (183)
Q Consensus        96 ~~i~~~l~~~~~~~~~~~--------------~~~~~~~~~~~-~~~~llvlD~~~~~~--~-~~~l~~~~~~~~~~~~i  157 (183)
                      +.++..+....|...+..              .+..++..+.. .+++.|||||.+-..  . ...+...+...+++.++
T Consensus        84 ~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~l  163 (894)
T COG2909          84 SYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTL  163 (894)
T ss_pred             HHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEE
Confidence            999888875555432221              23334443332 578999999987543  2 22333334455668999


Q ss_pred             EEEecChH
Q 035585          158 LLTARDCN  165 (183)
Q Consensus       158 iitsr~~~  165 (183)
                      ++|||...
T Consensus       164 vv~SR~rP  171 (894)
T COG2909         164 VVTSRSRP  171 (894)
T ss_pred             EEEeccCC
Confidence            99999765

>PTZ00202 tuzin; Provisional

Probab=99.07  E-value=2.3e-09  Score=86.13  Aligned_cols=106  Identities=21%  Similarity=0.237  Sum_probs=71.8

Q ss_pred             hcCCCcccccchHHHHHHHHHHhcc---CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHH
Q 035585           20 KSNKGYEAFKSRLSTLKSIQDALTD---VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHG   96 (183)
Q Consensus        20 ~~~~~~~~~~gR~~~l~~l~~~l~~---~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (183)
                      .-|++...|+||++++..|...+.+   ..++++.|+|++|+|||||++.+.....     ...++++..   +..+++.
T Consensus       256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~-----~~qL~vNpr---g~eElLr  327 (550)
T PTZ00202        256 SAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG-----MPAVFVDVR---GTEDTLR  327 (550)
T ss_pred             CCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC-----ceEEEECCC---CHHHHHH
Confidence            3467788999999999999998862   2446899999999999999999986654     113333333   5689999


Q ss_pred             HHHHHhCCCchhHH--HHHHHHH-HHHHHhc-CCeEEEEEe
Q 035585           97 EIAEKLGLEFSEEA--ESRRASR-LYERLKK-EKMILVILD  133 (183)
Q Consensus        97 ~i~~~l~~~~~~~~--~~~~~~~-~~~~~~~-~~~~llvlD  133 (183)
                      .++..|+.......  ....+.. +...... +++.+|||-
T Consensus       328 ~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~  368 (550)
T PTZ00202        328 SVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLK  368 (550)
T ss_pred             HHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence            99999997433221  1122222 2232233 556666654

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=99.05  E-value=2.5e-09  Score=83.82  Aligned_cols=133  Identities=12%  Similarity=0.094  Sum_probs=79.5

Q ss_pred             chhhhhhcCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHH
Q 035585           14 AEEVWLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKK   93 (183)
Q Consensus        14 ~~~~~~~~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (183)
                      ..+.....|.....++|++..++.+..++.....+.+.++|++|+|||++++.++..+.........+.++.+.......
T Consensus         5 ~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~   84 (319)
T PRK00440          5 EIWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDV   84 (319)
T ss_pred             CccchhhCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHH
Confidence            33444555666777899999999999998876666789999999999999999998875432211222223222222111


Q ss_pred             HHHHHHHHhCCCchhHHHHHHHHHHHHHH--hcCCeEEEEEeCCCCccc--ccccCcCCCCCCCCcEEEEEecC
Q 035585           94 IHGEIAEKLGLEFSEEAESRRASRLYERL--KKEKMILVILDNIWKYLD--LETVGIPFGDDHRGCKLLLTARD  163 (183)
Q Consensus        94 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~llvlD~~~~~~~--~~~l~~~~~~~~~~~~iiitsr~  163 (183)
                       ....+.                .+....  ....+.+|++||++.+..  ...+...+......+.+|+++..
T Consensus        85 -~~~~i~----------------~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~  141 (319)
T PRK00440         85 -IRNKIK----------------EFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNY  141 (319)
T ss_pred             -HHHHHH----------------HHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCC
Confidence             111111                111111  113467999999986632  33343444444455667776643

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=99.05  E-value=2.6e-09  Score=78.82  Aligned_cols=64  Identities=19%  Similarity=0.183  Sum_probs=43.4

Q ss_pred             cccchhhhhhcCCCcccccchHHHHHHHHHHhc-----cCCccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           11 RTIAEEVWLKSNKGYEAFKSRLSTLKSIQDALT-----DVNVNIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~gR~~~l~~l~~~l~-----~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      +...+-....-|.....|+|.+..++.+.-++.     +.....+.+|||+|+||||||..+++.+...
T Consensus         9 ~~~~~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~   77 (233)
T PF05496_consen    9 EEEAPLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN   77 (233)
T ss_dssp             ---S-HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--
T ss_pred             CcchhhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC
Confidence            334444556677888999999999988776554     3456789999999999999999999988765

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.02  E-value=3.2e-09  Score=89.14  Aligned_cols=145  Identities=12%  Similarity=0.210  Sum_probs=83.7

Q ss_pred             hhhhcCCCcccccchHHHHHHHHHHhccCCc-cEEEEEeCCCCcHHHHHHHHHhHHhhhhcc--cceEEEEecCCcCHHH
Q 035585           17 VWLKSNKGYEAFKSRLSTLKSIQDALTDVNV-NIVGVYGMGGIGKTTLVKEFARQASEEKLF--DQVVFSEVSQTPDIKK   93 (183)
Q Consensus        17 ~~~~~~~~~~~~~gR~~~l~~l~~~l~~~~~-~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~   93 (183)
                      .....|.....++|.+..++.|.+++.+.+. +.++++|+.|+||||+++.+.+.+......  .....--|...    .
T Consensus         7 arKYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C----~   82 (700)
T PRK12323          7 ARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQC----R   82 (700)
T ss_pred             HHHhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCccc----H
Confidence            3445677778899999999999999986554 457999999999999999999887542100  00000000000    0


Q ss_pred             HHHHHH-----HHhCCCchhHHHHHHHHHHHHHH----hcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEec
Q 035585           94 IHGEIA-----EKLGLEFSEEAESRRASRLYERL----KKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTAR  162 (183)
Q Consensus        94 ~~~~i~-----~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr  162 (183)
                      .+..|.     +.+..........+.++.+.+.+    ..++..++||||+|.+.  ..+.|+..+.....++.+|++|.
T Consensus        83 sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTt  162 (700)
T PRK12323         83 ACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATT  162 (700)
T ss_pred             HHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeC
Confidence            011110     00000000000111122222222    23567899999999774  46677676666666778777777


Q ss_pred             ChH
Q 035585          163 DCN  165 (183)
Q Consensus       163 ~~~  165 (183)
                      +.+
T Consensus       163 ep~  165 (700)
T PRK12323        163 DPQ  165 (700)
T ss_pred             ChH
Confidence            655

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=99.01  E-value=3.6e-09  Score=83.49  Aligned_cols=113  Identities=19%  Similarity=0.260  Sum_probs=69.9

Q ss_pred             cCCCcccccchHHHH---HHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHH
Q 035585           21 SNKGYEAFKSRLSTL---KSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGE   97 (183)
Q Consensus        21 ~~~~~~~~~gR~~~l---~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (183)
                      .|..-..++|.+-.+   .-|..++...+...+.+|||||+||||||+.+.......       |..++...+-..-.+.
T Consensus        19 RP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~-------f~~~sAv~~gvkdlr~   91 (436)
T COG2256          19 RPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAA-------FEALSAVTSGVKDLRE   91 (436)
T ss_pred             CCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCc-------eEEeccccccHHHHHH
Confidence            355555667766555   445566667888999999999999999999999865543       2333332222222222


Q ss_pred             HHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc--ccccccCcCCCCCCCCcEEEE
Q 035585           98 IAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY--LDLETVGIPFGDDHRGCKLLL  159 (183)
Q Consensus        98 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~--~~~~~l~~~~~~~~~~~~iii  159 (183)
                      ++                +........+++.+|++||+|..  .+.+.+++.+.+   |..++|
T Consensus        92 i~----------------e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~---G~iilI  136 (436)
T COG2256          92 II----------------EEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVEN---GTIILI  136 (436)
T ss_pred             HH----------------HHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcC---CeEEEE
Confidence            22                22223333488999999999965  355555554443   554444

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.98  E-value=3e-09  Score=88.34  Aligned_cols=131  Identities=18%  Similarity=0.189  Sum_probs=82.2

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhh---cc---cceEEEEecCC-----cCH------------HHHHHHHHHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEK---LF---DQVVFSEVSQT-----PDI------------KKIHGEIAEKL  102 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~---~~---~~~~~~~~~~~-----~~~------------~~~~~~i~~~l  102 (183)
                      +..-|+|+|++|+|||||++.+........   ..   ..+.|+.-...     ...            ....+.++.++
T Consensus       347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f  426 (530)
T COG0488         347 RGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF  426 (530)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHc
Confidence            446799999999999999999976664320   01   11233221110     001            23444455555


Q ss_pred             CCCchh-------HHHHHHHHHHHHHHhcCCeEEEEEeCCCCcccccccC--cCCCCCCCCcEEEEEecChHHHhhcCCC
Q 035585          103 GLEFSE-------EAESRRASRLYERLKKEKMILVILDNIWKYLDLETVG--IPFGDDHRGCKLLLTARDCNVLLNMSLC  173 (183)
Q Consensus       103 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~~~~l~--~~~~~~~~~~~iiitsr~~~~~~~~~~~  173 (183)
                      +.....       .+..+..+..+..+...++.+|||||..++.+++.+.  .......+|+ ||++|||+.++..+.+.
T Consensus       427 ~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gt-vl~VSHDr~Fl~~va~~  505 (530)
T COG0488         427 GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGT-VLLVSHDRYFLDRVATR  505 (530)
T ss_pred             CCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCe-EEEEeCCHHHHHhhcce
Confidence            433222       2334445555666666899999999999887766662  2233456786 99999999999988765


Q ss_pred             Ccch
Q 035585          174 RSEE  177 (183)
Q Consensus       174 ~~~~  177 (183)
                      ....
T Consensus       506 i~~~  509 (530)
T COG0488         506 IWLV  509 (530)
T ss_pred             EEEE
Confidence            5433

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=98.96  E-value=2.5e-09  Score=78.99  Aligned_cols=110  Identities=17%  Similarity=0.112  Sum_probs=84.6

Q ss_pred             hhhhhcCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHH
Q 035585           16 EVWLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIH   95 (183)
Q Consensus        16 ~~~~~~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (183)
                      +.....|....+.+|-++.++.+.........+.+.+.||||+||||-+..+++.+-...+.+.++-++++....+.-+.
T Consensus        17 wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVR   96 (333)
T KOG0991|consen   17 WVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVR   96 (333)
T ss_pred             HHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHH
Confidence            56666788888999999999999998888889999999999999999999999888765556677788888776665444


Q ss_pred             HHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcc
Q 035585           96 GEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKYL  139 (183)
Q Consensus        96 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~  139 (183)
                      ..|-              .+.+-.-.+..++.-++|+||+|++.
T Consensus        97 n~IK--------------~FAQ~kv~lp~grhKIiILDEADSMT  126 (333)
T KOG0991|consen   97 NKIK--------------MFAQKKVTLPPGRHKIIILDEADSMT  126 (333)
T ss_pred             HHHH--------------HHHHhhccCCCCceeEEEeeccchhh
Confidence            3331              12222223334788899999999884

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.94  E-value=7.3e-09  Score=87.21  Aligned_cols=126  Identities=12%  Similarity=0.196  Sum_probs=81.1

Q ss_pred             hhcCCCcccccchHHHHHHHHHHhccCC-ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcc-------------------c
Q 035585           19 LKSNKGYEAFKSRLSTLKSIQDALTDVN-VNIVGVYGMGGIGKTTLVKEFARQASEEKLF-------------------D   78 (183)
Q Consensus        19 ~~~~~~~~~~~gR~~~l~~l~~~l~~~~-~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~-------------------~   78 (183)
                      ...|.....++|.+.....|.+++.+.+ .+.++++|++|+||||+|+.+++.+......                   .
T Consensus         8 KyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hp   87 (702)
T PRK14960          8 KYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFI   87 (702)
T ss_pred             HhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCC
Confidence            3456777889999999999999998655 4678999999999999999999887532100                   0


Q ss_pred             ceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH----hcCCeEEEEEeCCCCcc--cccccCcCCCCCC
Q 035585           79 QVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERL----KKEKMILVILDNIWKYL--DLETVGIPFGDDH  152 (183)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~  152 (183)
                      .++.++..+...                     .+.++.+....    ..++..++||||+|.+.  ..+.++..+....
T Consensus        88 DviEIDAAs~~~---------------------VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP  146 (702)
T PRK14960         88 DLIEIDAASRTK---------------------VEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPP  146 (702)
T ss_pred             ceEEecccccCC---------------------HHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCC
Confidence            111111111111                     11112222211    12567799999999774  4556666665555


Q ss_pred             CCcEEEEEecChH
Q 035585          153 RGCKLLLTARDCN  165 (183)
Q Consensus       153 ~~~~iiitsr~~~  165 (183)
                      .++.+|+++.+..
T Consensus       147 ~~v~FILaTtd~~  159 (702)
T PRK14960        147 EHVKFLFATTDPQ  159 (702)
T ss_pred             CCcEEEEEECChH
Confidence            6778888887654

>PRK13342 recombination factor protein RarA; Reviewed

Probab=98.94  E-value=5.7e-09  Score=84.85  Aligned_cols=53  Identities=19%  Similarity=0.256  Sum_probs=44.0

Q ss_pred             cCCCcccccchHHHHHH---HHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           21 SNKGYEAFKSRLSTLKS---IQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        21 ~~~~~~~~~gR~~~l~~---l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      .|.....|+|++..+..   +..++.+...+.++|+|++|+||||+|+.+++....
T Consensus         7 RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~   62 (413)
T PRK13342          7 RPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDA   62 (413)
T ss_pred             CCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence            45566779999988766   888887777788999999999999999999887543

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]

Probab=98.94  E-value=2.7e-09  Score=81.46  Aligned_cols=137  Identities=20%  Similarity=0.203  Sum_probs=93.6

Q ss_pred             hhhhhcCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccc-eEEEEecCCcCHHHH
Q 035585           16 EVWLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQ-VVFSEVSQTPDIKKI   94 (183)
Q Consensus        16 ~~~~~~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   94 (183)
                      +....-|+....+.|-+..+.-|.+.+.+...+..+.|||+|+|||+.+..++..+...+.+.+ +.-.|++......-.
T Consensus        26 wteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvv  105 (346)
T KOG0989|consen   26 WTEKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVV  105 (346)
T ss_pred             hHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccch
Confidence            4555678888999999999999999988766789999999999999999999998876544443 444455443322210


Q ss_pred             HHHHHHHhCCCchhHHHHHHHHHHHHHH------hcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecChHH
Q 035585           95 HGEIAEKLGLEFSEEAESRRASRLYERL------KKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDCNV  166 (183)
Q Consensus        95 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~~~  166 (183)
                      ..++              ..+..+....      ....-.++||||+|.+.  .|..+...+.+....+++|+++..-+.
T Consensus       106 r~Ki--------------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsr  171 (346)
T KOG0989|consen  106 REKI--------------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSR  171 (346)
T ss_pred             hhhh--------------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhh
Confidence            0000              0011111111      01233799999999884  588888888888888888887765543

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=98.93  E-value=7.2e-09  Score=78.52  Aligned_cols=90  Identities=13%  Similarity=0.175  Sum_probs=61.9

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC--cCHHHHHHHH-----HHHhCCCchhHHHHH---H-
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT--PDIKKIHGEI-----AEKLGLEFSEEAESR---R-  114 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i-----~~~l~~~~~~~~~~~---~-  114 (183)
                      +.+.++|.|++|+|||||++.+++..... .|+..+|+.....  .+..++...+     +..+..  +......   . 
T Consensus        15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~--~~~~~~~~~~~~   91 (249)
T cd01128          15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE--PPERHVQVAEMV   91 (249)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC--CHHHHHHHHHHH
Confidence            45789999999999999999999988765 6777778876555  6788888888     443343  1211111   1 


Q ss_pred             HHHHHHHHhcCCeEEEEEeCCCCc
Q 035585          115 ASRLYERLKKEKMILVILDNIWKY  138 (183)
Q Consensus       115 ~~~~~~~~~~~~~~llvlD~~~~~  138 (183)
                      ..........+++.+|++||++..
T Consensus        92 ~~~a~~~~~~G~~vll~iDei~r~  115 (249)
T cd01128          92 LEKAKRLVEHGKDVVILLDSITRL  115 (249)
T ss_pred             HHHHHHHHHCCCCEEEEEECHHHh
Confidence            122222223578999999998754

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.91  E-value=1.1e-08  Score=88.48  Aligned_cols=130  Identities=16%  Similarity=0.243  Sum_probs=80.7

Q ss_pred             hhcCCCcccccchHHHHHHHHHHhccCCccE-EEEEeCCCCcHHHHHHHHHhHHhhhhcccc------------------
Q 035585           19 LKSNKGYEAFKSRLSTLKSIQDALTDVNVNI-VGVYGMGGIGKTTLVKEFARQASEEKLFDQ------------------   79 (183)
Q Consensus        19 ~~~~~~~~~~~gR~~~l~~l~~~l~~~~~~~-v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~------------------   79 (183)
                      ...|.....++|.+..+..|.+++...+.+. ++++|++|+||||+|+.+++.+........                  
T Consensus         9 KyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~   88 (944)
T PRK14949          9 KWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFV   88 (944)
T ss_pred             HhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCc
Confidence            3456777789999999999999988655554 589999999999999999988754311100                  


Q ss_pred             -eEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcE
Q 035585           80 -VVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCK  156 (183)
Q Consensus        80 -~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~  156 (183)
                       +++++........ ..+.+.                ..+...-..++..++||||++.+.  ..+.|+..+......++
T Consensus        89 DviEidAas~~kVD-dIReLi----------------e~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vr  151 (944)
T PRK14949         89 DLIEVDAASRTKVD-DTRELL----------------DNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVK  151 (944)
T ss_pred             eEEEeccccccCHH-HHHHHH----------------HHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeE
Confidence             1111111000010 011111                111111123677899999999773  56666666666666777


Q ss_pred             EEEEecChH
Q 035585          157 LLLTARDCN  165 (183)
Q Consensus       157 iiitsr~~~  165 (183)
                      +|++|.+..
T Consensus       152 FILaTTe~~  160 (944)
T PRK14949        152 FLLATTDPQ  160 (944)
T ss_pred             EEEECCCch
Confidence            777766544

>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=98.91  E-value=3.5e-08  Score=79.29  Aligned_cols=140  Identities=16%  Similarity=0.193  Sum_probs=95.5

Q ss_pred             cCCCcccccchHHHHHHHHHHhc----cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHH
Q 035585           21 SNKGYEAFKSRLSTLKSIQDALT----DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHG   96 (183)
Q Consensus        21 ~~~~~~~~~gR~~~l~~l~~~l~----~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (183)
                      ....+..+.||+.+++.+.+++.    ....+.+-|.|-+|.|||.++..++........-..++|+++.+-.....++.
T Consensus       145 ~t~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~  224 (529)
T KOG2227|consen  145 NTAPPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFK  224 (529)
T ss_pred             hcCCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHH
Confidence            44567789999999999999986    44567889999999999999999988887652233578999998777777888


Q ss_pred             HHHHHh--CCCchhHHHHHHHHHHHHHHhcC-CeEEEEEeCCCCcc--cccccCcCCCC-CCCCcEEEEEe
Q 035585           97 EIAEKL--GLEFSEEAESRRASRLYERLKKE-KMILVILDNIWKYL--DLETVGIPFGD-DHRGCKLLLTA  161 (183)
Q Consensus        97 ~i~~~l--~~~~~~~~~~~~~~~~~~~~~~~-~~~llvlD~~~~~~--~~~~l~~~~~~-~~~~~~iiits  161 (183)
                      .|+..+  ....++.. ....+.+.....+. ..+++|+||+|.+.  ....+...+.+ ..+++++|+..
T Consensus       225 kI~~~~~q~~~s~~~~-~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiG  294 (529)
T KOG2227|consen  225 KIFSSLLQDLVSPGTG-MQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIG  294 (529)
T ss_pred             HHHHHHHHHhcCCchh-HHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeee
Confidence            888777  22222222 22334444444433 47999999999773  23333333333 23456665554

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=98.91  E-value=1.7e-08  Score=85.50  Aligned_cols=56  Identities=21%  Similarity=0.281  Sum_probs=47.1

Q ss_pred             hhhcCCCcccccchHHHHHHHHHHhccCC-ccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           18 WLKSNKGYEAFKSRLSTLKSIQDALTDVN-VNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        18 ~~~~~~~~~~~~gR~~~l~~l~~~l~~~~-~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      ....|.....++|.+..+..|.+++.+.+ .+.++++|++|+||||+|+.++..+..
T Consensus         8 rKYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC   64 (709)
T PRK08691          8 RKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC   64 (709)
T ss_pred             HHhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence            34567778889999999999999988655 457899999999999999999887653

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.91  E-value=2.3e-08  Score=79.96  Aligned_cols=144  Identities=12%  Similarity=0.176  Sum_probs=79.2

Q ss_pred             hhcCCCcccccchHHHHHHHHHHhccCC-ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHH
Q 035585           19 LKSNKGYEAFKSRLSTLKSIQDALTDVN-VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGE   97 (183)
Q Consensus        19 ~~~~~~~~~~~gR~~~l~~l~~~l~~~~-~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (183)
                      ...|.....++|.+...+.+.+.+...+ ++.++++||+|+||||+|+.++..+........-   .+.......++...
T Consensus         9 kyrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~---pc~~c~~c~~~~~~   85 (363)
T PRK14961          9 KWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSN---PCRKCIICKEIEKG   85 (363)
T ss_pred             HhCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCC---CCCCCHHHHHHhcC
Confidence            3455677788999999999999887544 4567999999999999999999887532110000   00000000000000


Q ss_pred             HHHHhC-CCchhHHHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecChH
Q 035585           98 IAEKLG-LEFSEEAESRRASRLYERLK----KEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDCN  165 (183)
Q Consensus        98 i~~~l~-~~~~~~~~~~~~~~~~~~~~----~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~~  165 (183)
                      ..-.+. .........+.+..+...+.    ..+..++||||++.+.  .++.++..+......+.+|+++.+..
T Consensus        86 ~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~  160 (363)
T PRK14961         86 LCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVE  160 (363)
T ss_pred             CCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChH
Confidence            000000 00000001111223332221    2456799999999775  35556666665556777777776543

>PRK04195 replication factor C large subunit; Provisional

Probab=98.90  E-value=7.9e-09  Score=85.59  Aligned_cols=103  Identities=17%  Similarity=0.172  Sum_probs=66.5

Q ss_pred             hhhhcCCCcccccchHHHHHHHHHHhcc----CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHH
Q 035585           17 VWLKSNKGYEAFKSRLSTLKSIQDALTD----VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIK   92 (183)
Q Consensus        17 ~~~~~~~~~~~~~gR~~~l~~l~~~l~~----~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (183)
                      .....|.....++|++...+.|.+++.+    ...+.++|+|++|+||||+|+.+++.+.-     .++.++++......
T Consensus         5 ~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~-----~~ielnasd~r~~~   79 (482)
T PRK04195          5 VEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGW-----EVIELNASDQRTAD   79 (482)
T ss_pred             hhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCC-----CEEEEcccccccHH
Confidence            3445677778899999999999998862    23688999999999999999999987632     24445554332222


Q ss_pred             HHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcc
Q 035585           93 KIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKYL  139 (183)
Q Consensus        93 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~  139 (183)
                       ....++......              ..+...++.+|||||+|.+.
T Consensus        80 -~i~~~i~~~~~~--------------~sl~~~~~kvIiIDEaD~L~  111 (482)
T PRK04195         80 -VIERVAGEAATS--------------GSLFGARRKLILLDEVDGIH  111 (482)
T ss_pred             -HHHHHHHHhhcc--------------CcccCCCCeEEEEecCcccc
Confidence             222222111100              01111367899999998763

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.90  E-value=1.4e-08  Score=84.28  Aligned_cols=127  Identities=13%  Similarity=0.246  Sum_probs=81.9

Q ss_pred             hhhhcCCCcccccchHHHHHHHHHHhccCCcc-EEEEEeCCCCcHHHHHHHHHhHHhhhhccc-----------------
Q 035585           17 VWLKSNKGYEAFKSRLSTLKSIQDALTDVNVN-IVGVYGMGGIGKTTLVKEFARQASEEKLFD-----------------   78 (183)
Q Consensus        17 ~~~~~~~~~~~~~gR~~~l~~l~~~l~~~~~~-~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~-----------------   78 (183)
                      .....|.....++|-+..+..|.+++.+.+.+ .++++|++|+||||+|+.++..+.......                 
T Consensus         7 ~~kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~   86 (509)
T PRK14958          7 ARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGR   86 (509)
T ss_pred             HHHHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCC
Confidence            34456777888999999999999999865554 579999999999999999998775421110                 


Q ss_pred             --ceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH----hcCCeEEEEEeCCCCcc--cccccCcCCCC
Q 035585           79 --QVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERL----KKEKMILVILDNIWKYL--DLETVGIPFGD  150 (183)
Q Consensus        79 --~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~llvlD~~~~~~--~~~~l~~~~~~  150 (183)
                        .++.++..+.....                     .++.+...+    ..++..++||||+|.+.  ..+.++..+..
T Consensus        87 ~~d~~eidaas~~~v~---------------------~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEe  145 (509)
T PRK14958         87 FPDLFEVDAASRTKVE---------------------DTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEE  145 (509)
T ss_pred             CceEEEEcccccCCHH---------------------HHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhc
Confidence              12222222111111                     112222221    12566789999999763  46666666666


Q ss_pred             CCCCcEEEEEecCh
Q 035585          151 DHRGCKLLLTARDC  164 (183)
Q Consensus       151 ~~~~~~iiitsr~~  164 (183)
                      ....+.+|++|.+.
T Consensus       146 pp~~~~fIlattd~  159 (509)
T PRK14958        146 PPSHVKFILATTDH  159 (509)
T ss_pred             cCCCeEEEEEECCh
Confidence            66678777777654

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.90  E-value=5.9e-09  Score=86.60  Aligned_cols=60  Identities=23%  Similarity=0.207  Sum_probs=43.9

Q ss_pred             HHHHHHhcCCeEEEEEeCCCCcccccccCc--CCCCCCCCcEEEEEecChHHHhhcCCCCcch
Q 035585          117 RLYERLKKEKMILVILDNIWKYLDLETVGI--PFGDDHRGCKLLLTARDCNVLLNMSLCRSEE  177 (183)
Q Consensus       117 ~~~~~~~~~~~~llvlD~~~~~~~~~~l~~--~~~~~~~~~~iiitsr~~~~~~~~~~~~~~~  177 (183)
                      ..+.++.-.++-+|+|||..++.+++.+.+  .+....+| .+|++|||+.++..+.++....
T Consensus       162 v~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~g-tviiVSHDR~FLd~V~t~I~~l  223 (530)
T COG0488         162 VALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPG-TVIVVSHDRYFLDNVATHILEL  223 (530)
T ss_pred             HHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHhhheEEe
Confidence            333333347888999999999887666522  23345667 6999999999999988876654

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.89  E-value=2.7e-08  Score=82.90  Aligned_cols=129  Identities=14%  Similarity=0.188  Sum_probs=78.9

Q ss_pred             hhcCCCcccccchHHHHHHHHHHhccCCc-cEEEEEeCCCCcHHHHHHHHHhHHhhhhc-------------------cc
Q 035585           19 LKSNKGYEAFKSRLSTLKSIQDALTDVNV-NIVGVYGMGGIGKTTLVKEFARQASEEKL-------------------FD   78 (183)
Q Consensus        19 ~~~~~~~~~~~gR~~~l~~l~~~l~~~~~-~~v~i~G~~G~GKTtL~~~~~~~~~~~~~-------------------~~   78 (183)
                      ...|.....++|.+..+..|.+.+...+. +.++++|++|+||||+|+.++..+.....                   +.
T Consensus         9 KyRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~   88 (546)
T PRK14957          9 KYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFI   88 (546)
T ss_pred             HHCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCC
Confidence            34566777889999999999998876544 55889999999999999999987753210                   00


Q ss_pred             ceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcE
Q 035585           79 QVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCK  156 (183)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~  156 (183)
                      .+++++........                 ........+...-..+++.++||||++.+.  ..+.++..+......+.
T Consensus        89 dlieidaas~~gvd-----------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~  151 (546)
T PRK14957         89 DLIEIDAASRTGVE-----------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVK  151 (546)
T ss_pred             ceEEeecccccCHH-----------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCce
Confidence            11111111111111                 001111111111123677899999999764  46666666666556777


Q ss_pred             EEEEecCh
Q 035585          157 LLLTARDC  164 (183)
Q Consensus       157 iiitsr~~  164 (183)
                      +|++|.+.
T Consensus       152 fIL~Ttd~  159 (546)
T PRK14957        152 FILATTDY  159 (546)
T ss_pred             EEEEECCh
Confidence            77666554

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.88  E-value=1.8e-08  Score=82.32  Aligned_cols=144  Identities=13%  Similarity=0.173  Sum_probs=81.3

Q ss_pred             hhhhcCCCcccccchHHHHHHHHHHhccCCc-cEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHH
Q 035585           17 VWLKSNKGYEAFKSRLSTLKSIQDALTDVNV-NIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIH   95 (183)
Q Consensus        17 ~~~~~~~~~~~~~gR~~~l~~l~~~l~~~~~-~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (183)
                      .....|.....++|.+..+..|.+++.+.+. +.++++|++|+||||+|+.++..+........   ..|........+.
T Consensus         9 ~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~---~pCg~C~sC~~i~   85 (484)
T PRK14956          9 SRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN---EPCNECTSCLEIT   85 (484)
T ss_pred             HHHhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc---cccCCCcHHHHHH
Confidence            3345667778889999999999998886664 46899999999999999999987754311100   0011111111111


Q ss_pred             HHHHHHhCC-CchhHHHHHHHHHHHHHH----hcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecC
Q 035585           96 GEIAEKLGL-EFSEEAESRRASRLYERL----KKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARD  163 (183)
Q Consensus        96 ~~i~~~l~~-~~~~~~~~~~~~~~~~~~----~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~  163 (183)
                      ......+.. ........+.+..+...+    ..++..++||||+|.+.  .++.++..+......+.+|++|.+
T Consensus        86 ~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte  160 (484)
T PRK14956         86 KGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTE  160 (484)
T ss_pred             ccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCC
Confidence            111000000 000000011122222222    23567899999999774  466666666555556666666654

>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]

Probab=98.87  E-value=1.7e-08  Score=79.09  Aligned_cols=96  Identities=18%  Similarity=0.300  Sum_probs=62.3

Q ss_pred             CcccccchHHHH---HHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHH
Q 035585           24 GYEAFKSRLSTL---KSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAE  100 (183)
Q Consensus        24 ~~~~~~gR~~~l---~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  100 (183)
                      .-.+++|.+..+   .-|.++++.++.+.+.+|||+|+||||||+.+...-+..    ..+|+..+-......-.+.+++
T Consensus       136 tL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~----SyrfvelSAt~a~t~dvR~ife  211 (554)
T KOG2028|consen  136 TLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKH----SYRFVELSATNAKTNDVRDIFE  211 (554)
T ss_pred             hHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCC----ceEEEEEeccccchHHHHHHHH
Confidence            334555655544   334556667888999999999999999999998875543    2567777655444433444432


Q ss_pred             HhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585          101 KLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY  138 (183)
Q Consensus       101 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~  138 (183)
                      +              .+-...+ ..++.+|++||++.-
T Consensus       212 ~--------------aq~~~~l-~krkTilFiDEiHRF  234 (554)
T KOG2028|consen  212 Q--------------AQNEKSL-TKRKTILFIDEIHRF  234 (554)
T ss_pred             H--------------HHHHHhh-hcceeEEEeHHhhhh
Confidence            2              1111122 378999999999854

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.87  E-value=9.8e-09  Score=70.02  Aligned_cols=91  Identities=22%  Similarity=0.181  Sum_probs=52.5

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCC
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEK  126 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~  126 (183)
                      .+.+.|+|++|+||||+++.++..+....  ..+++++.+........... ............................
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLK   78 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence            46789999999999999999999877652  34666655544322111111 0111111111122223334444444344


Q ss_pred             eEEEEEeCCCCccc
Q 035585          127 MILVILDNIWKYLD  140 (183)
Q Consensus       127 ~~llvlD~~~~~~~  140 (183)
                      ..+|++||++....
T Consensus        79 ~~viiiDei~~~~~   92 (148)
T smart00382       79 PDVLILDEITSLLD   92 (148)
T ss_pred             CCEEEEECCcccCC
Confidence            69999999987743

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=98.85  E-value=1.2e-08  Score=80.09  Aligned_cols=128  Identities=13%  Similarity=0.116  Sum_probs=78.0

Q ss_pred             hhhhhhcCCCcccccchHHHHHHHHHHhccCCc-cEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHH
Q 035585           15 EEVWLKSNKGYEAFKSRLSTLKSIQDALTDVNV-NIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKK   93 (183)
Q Consensus        15 ~~~~~~~~~~~~~~~gR~~~l~~l~~~l~~~~~-~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (183)
                      .+.....|.....++|.+...+.+..++.+.+. +.++++|++|+|||++++.+++....     .+.++++.. .. ..
T Consensus        10 ~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~-----~~~~i~~~~-~~-~~   82 (316)
T PHA02544         10 MWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGA-----EVLFVNGSD-CR-ID   82 (316)
T ss_pred             cceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCc-----cceEeccCc-cc-HH
Confidence            344455677778889999999999998875544 56666999999999999999887532     234555544 11 11


Q ss_pred             HHHHHHHHhCCCchhHHHHHHHHHHHHHH-hcCCeEEEEEeCCCCcc---cccccCcCCCCCCCCcEEEEEecChH
Q 035585           94 IHGEIAEKLGLEFSEEAESRRASRLYERL-KKEKMILVILDNIWKYL---DLETVGIPFGDDHRGCKLLLTARDCN  165 (183)
Q Consensus        94 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~llvlD~~~~~~---~~~~l~~~~~~~~~~~~iiitsr~~~  165 (183)
                      ..+..+.                ...... .....-+|||||++...   ....+...+.....++.+|+|+....
T Consensus        83 ~i~~~l~----------------~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~  142 (316)
T PHA02544         83 FVRNRLT----------------RFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKN  142 (316)
T ss_pred             HHHHHHH----------------HHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChh
Confidence            1111110                111111 01356789999998662   12223222334455778888887544

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=98.84  E-value=1.2e-08  Score=69.50  Aligned_cols=96  Identities=17%  Similarity=0.205  Sum_probs=55.6

Q ss_pred             EEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCC-eE
Q 035585           50 VGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEK-MI  128 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~  128 (183)
                      ++|+|++|+|||++++.+++.+..     .++.++.+...+.               ........+..++....... +.
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~-----~~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~~~~~~~~~   60 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGF-----PFIEIDGSELISS---------------YAGDSEQKIRDFFKKAKKSAKPC   60 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTS-----EEEEEETTHHHTS---------------STTHHHHHHHHHHHHHHHTSTSE
T ss_pred             CEEECcCCCCeeHHHHHHHhhccc-----ccccccccccccc---------------cccccccccccccccccccccce
Confidence            589999999999999999998742     2334444322110               01122233344444444344 89


Q ss_pred             EEEEeCCCCccc-------------ccccCcCCCCC---CCCcEEEEEecChH
Q 035585          129 LVILDNIWKYLD-------------LETVGIPFGDD---HRGCKLLLTARDCN  165 (183)
Q Consensus       129 llvlD~~~~~~~-------------~~~l~~~~~~~---~~~~~iiitsr~~~  165 (183)
                      +|+|||+|....             ...+...+...   .....+|.||.+.+
T Consensus        61 vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~  113 (132)
T PF00004_consen   61 VLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPD  113 (132)
T ss_dssp             EEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGG
T ss_pred             eeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCChh
Confidence            999999986532             22232222222   23467888887744

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.83  E-value=2.7e-08  Score=81.86  Aligned_cols=54  Identities=22%  Similarity=0.218  Sum_probs=44.8

Q ss_pred             hcCCCcccccchHHHHHHHHHHhccCCc-cEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           20 KSNKGYEAFKSRLSTLKSIQDALTDVNV-NIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        20 ~~~~~~~~~~gR~~~l~~l~~~l~~~~~-~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      ..|.....++|.+.....|...+.+.+. +.++++||+|+||||+|+.++..+..
T Consensus         8 yRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~   62 (472)
T PRK14962          8 YRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNC   62 (472)
T ss_pred             HCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            4566777889999988888888876655 45899999999999999999987754

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=98.83  E-value=3.8e-08  Score=83.40  Aligned_cols=140  Identities=14%  Similarity=0.218  Sum_probs=81.4

Q ss_pred             hhcCCCcccccchHHHHHHHHHHhccCCcc-EEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHH
Q 035585           19 LKSNKGYEAFKSRLSTLKSIQDALTDVNVN-IVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGE   97 (183)
Q Consensus        19 ~~~~~~~~~~~gR~~~l~~l~~~l~~~~~~-~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (183)
                      ...|.....++|.+..+..|.+.+.+++.+ .++++|+.|+||||+|+.++..+........   ..|...    ..+..
T Consensus         9 KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~---~pCg~C----~~C~~   81 (647)
T PRK07994          9 KWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITA---TPCGEC----DNCRE   81 (647)
T ss_pred             HhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCC---CCCCCC----HHHHH
Confidence            345677788999999999999988865554 4689999999999999999987765311000   000000    11111


Q ss_pred             HHHH-----hCCCchhHHHHHHHHHHHHHH----hcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecChH
Q 035585           98 IAEK-----LGLEFSEEAESRRASRLYERL----KKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDCN  165 (183)
Q Consensus        98 i~~~-----l~~~~~~~~~~~~~~~~~~~~----~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~~  165 (183)
                      |...     +..........+.++.+...+    ..++..++||||+|.+.  ..+.|+..+......+++|++|.+..
T Consensus        82 i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~  160 (647)
T PRK07994         82 IEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ  160 (647)
T ss_pred             HHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCcc
Confidence            1100     000000000111122222221    23677899999999774  46666666666666777777776654

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=98.82  E-value=7.8e-09  Score=77.19  Aligned_cols=55  Identities=15%  Similarity=0.274  Sum_probs=41.2

Q ss_pred             hHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585           31 RLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ   87 (183)
Q Consensus        31 R~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~   87 (183)
                      ....+..+.+++.....+.+.|+|++|+|||+|++.+++.....  ....+|+++..
T Consensus        22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~--~~~~~~i~~~~   76 (226)
T TIGR03420        22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLAE   76 (226)
T ss_pred             cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEeHHH
Confidence            45577777777655667899999999999999999999877643  33456665543

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.81  E-value=4.8e-08  Score=82.53  Aligned_cols=142  Identities=13%  Similarity=0.195  Sum_probs=80.3

Q ss_pred             hhhcCCCcccccchHHHHHHHHHHhccCCc-cEEEEEeCCCCcHHHHHHHHHhHHhhhhcc--cceEEEEecCCcCHHHH
Q 035585           18 WLKSNKGYEAFKSRLSTLKSIQDALTDVNV-NIVGVYGMGGIGKTTLVKEFARQASEEKLF--DQVVFSEVSQTPDIKKI   94 (183)
Q Consensus        18 ~~~~~~~~~~~~gR~~~l~~l~~~l~~~~~-~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~   94 (183)
                      ....|.....++|-+..+..|.+++.+.+. +.++++|+.|+||||+++.++..+......  .+.-.-.|...    ..
T Consensus         8 ~KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C----~~   83 (618)
T PRK14951          8 RKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVC----QA   83 (618)
T ss_pred             HHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCcc----HH
Confidence            344567778899999999999999886555 567999999999999999998876532110  00000000000    01


Q ss_pred             HHHHHHH-----hCCCchhHHHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecC
Q 035585           95 HGEIAEK-----LGLEFSEEAESRRASRLYERLK----KEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARD  163 (183)
Q Consensus        95 ~~~i~~~-----l~~~~~~~~~~~~~~~~~~~~~----~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~  163 (183)
                      +..+...     +..........+.++.+.+...    .++..++||||+|.+.  ..+.++..+......+.+|++|.+
T Consensus        84 C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd  163 (618)
T PRK14951         84 CRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTD  163 (618)
T ss_pred             HHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECC
Confidence            1111000     0000000001112223333221    2456799999999774  466666666665667777777755

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.81  E-value=4.8e-08  Score=80.43  Aligned_cols=127  Identities=13%  Similarity=0.183  Sum_probs=79.8

Q ss_pred             hcCCCcccccchHHHHHHHHHHhccCCc-cEEEEEeCCCCcHHHHHHHHHhHHhhhh-------------------cccc
Q 035585           20 KSNKGYEAFKSRLSTLKSIQDALTDVNV-NIVGVYGMGGIGKTTLVKEFARQASEEK-------------------LFDQ   79 (183)
Q Consensus        20 ~~~~~~~~~~gR~~~l~~l~~~l~~~~~-~~v~i~G~~G~GKTtL~~~~~~~~~~~~-------------------~~~~   79 (183)
                      ..|.....++|.+...+.|.+++..++. +.++++|++|+||||+|+.++..+....                   ....
T Consensus         7 yRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~D   86 (491)
T PRK14964          7 YRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPD   86 (491)
T ss_pred             hCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCC
Confidence            3456677889999999999988875554 4899999999999999999987653210                   0112


Q ss_pred             eEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH-hcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcE
Q 035585           80 VVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERL-KKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCK  156 (183)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~  156 (183)
                      ++.++..+.....+ .+.+.+                .. .+. ...+..++||||++.+.  ..+.++..+....+.+.
T Consensus        87 v~eidaas~~~vdd-IR~Iie----------------~~-~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~  148 (491)
T PRK14964         87 VIEIDAASNTSVDD-IKVILE----------------NS-CYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVK  148 (491)
T ss_pred             EEEEecccCCCHHH-HHHHHH----------------HH-HhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeE
Confidence            33334333222221 111111                11 111 12567899999998763  36666666666667777


Q ss_pred             EEEEecCh
Q 035585          157 LLLTARDC  164 (183)
Q Consensus       157 iiitsr~~  164 (183)
                      +|+++.+.
T Consensus       149 fIlatte~  156 (491)
T PRK14964        149 FILATTEV  156 (491)
T ss_pred             EEEEeCCh
Confidence            77776543

>CHL00095 clpC Clp protease ATP binding subunit

Probab=98.81  E-value=3.7e-08  Score=86.39  Aligned_cols=100  Identities=17%  Similarity=0.366  Sum_probs=67.0

Q ss_pred             ccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhh----cccceEE-EEecCCcCHHHHHHHHHH
Q 035585           26 EAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEK----LFDQVVF-SEVSQTPDIKKIHGEIAE  100 (183)
Q Consensus        26 ~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~i~~  100 (183)
                      ..++||+++++.+.+.|.......++|+|++|+|||++++.++.......    .....+| +++.          .++.
T Consensus       179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~----------~l~a  248 (821)
T CHL00095        179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIG----------LLLA  248 (821)
T ss_pred             CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHH----------HHhc
Confidence            46899999999999999877777889999999999999999998876421    1122333 2221          1111


Q ss_pred             HhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585          101 KLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY  138 (183)
Q Consensus       101 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~  138 (183)
                        +....+ .....+..++..+...++.+|+|||+|..
T Consensus       249 --g~~~~g-e~e~rl~~i~~~~~~~~~~ILfiDEih~l  283 (821)
T CHL00095        249 --GTKYRG-EFEERLKRIFDEIQENNNIILVIDEVHTL  283 (821)
T ss_pred             --cCCCcc-HHHHHHHHHHHHHHhcCCeEEEEecHHHH
Confidence              111111 22334455666665567899999999744

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=98.80  E-value=3.6e-08  Score=85.86  Aligned_cols=129  Identities=11%  Similarity=0.108  Sum_probs=78.8

Q ss_pred             hcCCCcccccchHHHHHHHHHHhccCCc-cEEEEEeCCCCcHHHHHHHHHhHHhhhhcc--c------------------
Q 035585           20 KSNKGYEAFKSRLSTLKSIQDALTDVNV-NIVGVYGMGGIGKTTLVKEFARQASEEKLF--D------------------   78 (183)
Q Consensus        20 ~~~~~~~~~~gR~~~l~~l~~~l~~~~~-~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~--~------------------   78 (183)
                      +-|.....++|.+..++.|.+++.+.+. +.++++|+.|+||||+++.+.+.+......  .                  
T Consensus         9 yRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~   88 (824)
T PRK07764          9 YRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGS   88 (824)
T ss_pred             hCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCC
Confidence            3455667789999999999999886555 458999999999999999999887532110  0                  


Q ss_pred             -ceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCc
Q 035585           79 -QVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKYL--DLETVGIPFGDDHRGC  155 (183)
Q Consensus        79 -~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~  155 (183)
                       .+++++..+...+.+                 .......+...-...+..|+||||+|.+.  ..+.|+..+......+
T Consensus        89 ~dv~eidaas~~~Vd~-----------------iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~  151 (824)
T PRK07764         89 LDVTEIDAASHGGVDD-----------------ARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHL  151 (824)
T ss_pred             CcEEEecccccCCHHH-----------------HHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCe
Confidence             011111111111100                 00011111111123567789999999774  4666766766666777


Q ss_pred             EEEEEecChH
Q 035585          156 KLLLTARDCN  165 (183)
Q Consensus       156 ~iiitsr~~~  165 (183)
                      .+|+++.+.+
T Consensus       152 ~fIl~tt~~~  161 (824)
T PRK07764        152 KFIFATTEPD  161 (824)
T ss_pred             EEEEEeCChh
Confidence            7777775443

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=98.80  E-value=6.6e-08  Score=80.11  Aligned_cols=59  Identities=14%  Similarity=0.146  Sum_probs=48.3

Q ss_pred             hhhhhhcCCCcccccchHHHHHHHHHHhccCC-ccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           15 EEVWLKSNKGYEAFKSRLSTLKSIQDALTDVN-VNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        15 ~~~~~~~~~~~~~~~gR~~~l~~l~~~l~~~~-~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      +......|.....++|-+..+..|.+.+.+.+ .+.++++|++|+||||+|+.++..+..
T Consensus        10 ~la~kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc   69 (507)
T PRK06645         10 PFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNC   69 (507)
T ss_pred             chhhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence            34445567788888999999999998776544 468999999999999999999988754

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=98.79  E-value=7.3e-08  Score=76.71  Aligned_cols=56  Identities=16%  Similarity=0.250  Sum_probs=45.9

Q ss_pred             hhhcCCCcccccchHHHHHHHHHHhccCC-ccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           18 WLKSNKGYEAFKSRLSTLKSIQDALTDVN-VNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        18 ~~~~~~~~~~~~gR~~~l~~l~~~l~~~~-~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      ....|.....++|.++.++.|.+.+.+.+ ++.++++|++|+|||++++.+...+..
T Consensus         6 ~~~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~   62 (355)
T TIGR02397         6 RKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNC   62 (355)
T ss_pred             HHhCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            34456677788999999999999887544 457889999999999999999988753

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.78  E-value=8.2e-08  Score=80.20  Aligned_cols=126  Identities=14%  Similarity=0.242  Sum_probs=78.8

Q ss_pred             hhcCCCcccccchHHHHHHHHHHhccCCc-cEEEEEeCCCCcHHHHHHHHHhHHhhhhcc--c-----------------
Q 035585           19 LKSNKGYEAFKSRLSTLKSIQDALTDVNV-NIVGVYGMGGIGKTTLVKEFARQASEEKLF--D-----------------   78 (183)
Q Consensus        19 ~~~~~~~~~~~gR~~~l~~l~~~l~~~~~-~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~--~-----------------   78 (183)
                      ...|.....++|.+..+..|.+++.+.+. +.++++|++|+||||+|+.++..+......  .                 
T Consensus         9 k~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~   88 (527)
T PRK14969          9 KWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFV   88 (527)
T ss_pred             HhCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence            34456677889999999999999886554 457899999999999999999877432110  0                 


Q ss_pred             ceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH----hcCCeEEEEEeCCCCcc--cccccCcCCCCCC
Q 035585           79 QVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERL----KKEKMILVILDNIWKYL--DLETVGIPFGDDH  152 (183)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~  152 (183)
                      .+++++......                     .+.++.+....    ..++..++||||++.+.  ..+.++..+....
T Consensus        89 d~~ei~~~~~~~---------------------vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp  147 (527)
T PRK14969         89 DLIEVDAASNTQ---------------------VDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPP  147 (527)
T ss_pred             ceeEeeccccCC---------------------HHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCC
Confidence            011111111111                     11122222222    12567899999999774  3556666666655


Q ss_pred             CCcEEEEEecChH
Q 035585          153 RGCKLLLTARDCN  165 (183)
Q Consensus       153 ~~~~iiitsr~~~  165 (183)
                      ..+.+|++|.+.+
T Consensus       148 ~~~~fIL~t~d~~  160 (527)
T PRK14969        148 EHVKFILATTDPQ  160 (527)
T ss_pred             CCEEEEEEeCChh
Confidence            6777777775543

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=98.78  E-value=6.4e-08  Score=83.96  Aligned_cols=102  Identities=17%  Similarity=0.266  Sum_probs=66.7

Q ss_pred             CcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhc----ccceEE-EEecCCcCHHHHHHHH
Q 035585           24 GYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKL----FDQVVF-SEVSQTPDIKKIHGEI   98 (183)
Q Consensus        24 ~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~i   98 (183)
                      .-..++||+.+++.+...|.+.....++++|++|+|||++++.++.++.....    ....+| +++.          .+
T Consensus       180 ~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~----------~l  249 (731)
T TIGR02639       180 KIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMG----------SL  249 (731)
T ss_pred             CCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHH----------HH
Confidence            33478999999999999998777788999999999999999999998854321    122222 2211          11


Q ss_pred             HHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585           99 AEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY  138 (183)
Q Consensus        99 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~  138 (183)
                      ...  .... ......+..+++.+...++.+|+|||+|..
T Consensus       250 ~a~--~~~~-g~~e~~l~~i~~~~~~~~~~ILfiDEih~l  286 (731)
T TIGR02639       250 LAG--TKYR-GDFEERLKAVVSEIEKEPNAILFIDEIHTI  286 (731)
T ss_pred             hhh--cccc-chHHHHHHHHHHHHhccCCeEEEEecHHHH
Confidence            100  0000 122234455555555456899999999854

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=98.77  E-value=8e-08  Score=75.42  Aligned_cols=123  Identities=15%  Similarity=0.217  Sum_probs=76.6

Q ss_pred             ccccchHHHHHHHHHHhccCC-ccEEEEEeCCCCcHHHHHHHHHhHHhhh----hcccceEEEEecCC-cCHHHHHHHHH
Q 035585           26 EAFKSRLSTLKSIQDALTDVN-VNIVGVYGMGGIGKTTLVKEFARQASEE----KLFDQVVFSEVSQT-PDIKKIHGEIA   99 (183)
Q Consensus        26 ~~~~gR~~~l~~l~~~l~~~~-~~~v~i~G~~G~GKTtL~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~i~   99 (183)
                      ..++|.+...+.+.+.+...+ ++.++++|+.|+|||++|+.++..+-..    .+.+...|...... ....+ .+.+.
T Consensus         4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~   82 (313)
T PRK05564          4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNII   82 (313)
T ss_pred             hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHH
Confidence            356788888888998887544 4677999999999999999999876432    12222122111111 11111 11111


Q ss_pred             HHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecChH
Q 035585          100 EKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDCN  165 (183)
Q Consensus       100 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~~  165 (183)
                      +.                +...-...++.++|||+++.+.  ..+.++..+.....++.+|++|.+.+
T Consensus        83 ~~----------------~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~  134 (313)
T PRK05564         83 EE----------------VNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLE  134 (313)
T ss_pred             HH----------------HhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence            11                1111113678899999988663  47777777777777888888887654

>PRK10865 protein disaggregation chaperone; Provisional

Probab=98.77  E-value=4e-08  Score=86.34  Aligned_cols=102  Identities=15%  Similarity=0.225  Sum_probs=66.0

Q ss_pred             CcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhc----cc-ceEEEEecCCcCHHHHHHHH
Q 035585           24 GYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKL----FD-QVVFSEVSQTPDIKKIHGEI   98 (183)
Q Consensus        24 ~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~i   98 (183)
                      .-..++||+.++..+...|.+.....++++|++|+|||++++.++........    .. .++++++.....-       
T Consensus       176 ~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag-------  248 (857)
T PRK10865        176 KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAG-------  248 (857)
T ss_pred             CCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhc-------
Confidence            34568999999999999998777788999999999999999999988754211    11 2333333321100       


Q ss_pred             HHHhCCCchhHHHHHHHHHHHHHHh-cCCeEEEEEeCCCCc
Q 035585           99 AEKLGLEFSEEAESRRASRLYERLK-KEKMILVILDNIWKY  138 (183)
Q Consensus        99 ~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~llvlD~~~~~  138 (183)
                           .... ......+..++..+. ..++.+|+|||+|..
T Consensus       249 -----~~~~-g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l  283 (857)
T PRK10865        249 -----AKYR-GEFEERLKGVLNDLAKQEGNVILFIDELHTM  283 (857)
T ss_pred             -----cchh-hhhHHHHHHHHHHHHHcCCCeEEEEecHHHh
Confidence                 0000 011223344444432 357899999999866

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.77  E-value=8.9e-08  Score=80.55  Aligned_cols=54  Identities=19%  Similarity=0.186  Sum_probs=45.0

Q ss_pred             hcCCCcccccchHHHHHHHHHHhccCCcc-EEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           20 KSNKGYEAFKSRLSTLKSIQDALTDVNVN-IVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        20 ~~~~~~~~~~gR~~~l~~l~~~l~~~~~~-~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      ..|.....++|.+...+.|.+++.+.+.. .++++|++|+||||+|+.++..+..
T Consensus         7 yRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c   61 (584)
T PRK14952          7 YRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNC   61 (584)
T ss_pred             hCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            34566778899999999999998865554 5789999999999999999987753

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.77  E-value=7e-08  Score=80.08  Aligned_cols=53  Identities=17%  Similarity=0.157  Sum_probs=43.2

Q ss_pred             cCCCcccccchHHHHHHHHHHhccCCc-cEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           21 SNKGYEAFKSRLSTLKSIQDALTDVNV-NIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        21 ~~~~~~~~~gR~~~l~~l~~~l~~~~~-~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      .|.....++|.+.....|.+++.+.+. +.++++|++|+||||+|+.++..+..
T Consensus         9 RP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c   62 (504)
T PRK14963          9 RPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNC   62 (504)
T ss_pred             CCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            455566788999999999988875544 45699999999999999999988753

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=98.76  E-value=6.2e-08  Score=81.78  Aligned_cols=143  Identities=11%  Similarity=0.171  Sum_probs=82.0

Q ss_pred             hhhhcCCCcccccchHHHHHHHHHHhccCC-ccEEEEEeCCCCcHHHHHHHHHhHHhhhhccc--ceEEEEecCCcCHHH
Q 035585           17 VWLKSNKGYEAFKSRLSTLKSIQDALTDVN-VNIVGVYGMGGIGKTTLVKEFARQASEEKLFD--QVVFSEVSQTPDIKK   93 (183)
Q Consensus        17 ~~~~~~~~~~~~~gR~~~l~~l~~~l~~~~-~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~   93 (183)
                      ...+.|.....++|.+..++.|.+++...+ .+.++++|++|+||||+|+.+++.+.......  ...+--|...    .
T Consensus        15 a~KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c----~   90 (598)
T PRK09111         15 ARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVG----E   90 (598)
T ss_pred             HhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCccc----H
Confidence            334456778889999999999999988555 45799999999999999999998775431110  0000000000    0


Q ss_pred             HHHHHHHHhCCCc-----hhHHHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEec
Q 035585           94 IHGEIAEKLGLEF-----SEEAESRRASRLYERLK----KEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTAR  162 (183)
Q Consensus        94 ~~~~i~~~l~~~~-----~~~~~~~~~~~~~~~~~----~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr  162 (183)
                      .+..+........     ......+.++.+...+.    ..+..++||||++.+.  ..+.|+..+.....++.+|+++.
T Consensus        91 ~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tt  170 (598)
T PRK09111         91 HCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATT  170 (598)
T ss_pred             HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence            1111211110000     00001112223332221    2566789999998774  36666666666666777776664


Q ss_pred             C
Q 035585          163 D  163 (183)
Q Consensus       163 ~  163 (183)
                      +
T Consensus       171 e  171 (598)
T PRK09111        171 E  171 (598)
T ss_pred             C
Confidence            3

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=98.76  E-value=2.2e-08  Score=79.12  Aligned_cols=54  Identities=22%  Similarity=0.302  Sum_probs=45.2

Q ss_pred             hcCCCcccccchHHHHHHHHHHhc-----cCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           20 KSNKGYEAFKSRLSTLKSIQDALT-----DVNVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        20 ~~~~~~~~~~gR~~~l~~l~~~l~-----~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      ..|+....|+||++.++.+..++.     +...+.++++|++|+|||++|+.+++.+..
T Consensus        19 ~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~   77 (328)
T PRK00080         19 LRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGV   77 (328)
T ss_pred             cCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCC
Confidence            346678889999999999887765     344578999999999999999999998754

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=98.75  E-value=3.8e-08  Score=76.85  Aligned_cols=49  Identities=22%  Similarity=0.306  Sum_probs=40.9

Q ss_pred             cccccchHHHHHHHHHHhc-----cCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           25 YEAFKSRLSTLKSIQDALT-----DVNVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        25 ~~~~~gR~~~l~~l~~~l~-----~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      ...|+|++.+++.|..++.     ...++.+.++|++|+|||+|++.+++.+..
T Consensus         3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~   56 (305)
T TIGR00635         3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGV   56 (305)
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3468999999999988775     344567899999999999999999987653

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=98.75  E-value=4.7e-08  Score=85.76  Aligned_cols=104  Identities=15%  Similarity=0.227  Sum_probs=67.1

Q ss_pred             CCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhc----ccc-eEEEEecCCcCHHHHHH
Q 035585           22 NKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKL----FDQ-VVFSEVSQTPDIKKIHG   96 (183)
Q Consensus        22 ~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~   96 (183)
                      +..-..++||+.++..+.+.|.+.....++|+|++|+|||++++.++..+.....    ... ++.++++.-.+      
T Consensus       183 ~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~a------  256 (852)
T TIGR03345       183 EGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQA------  256 (852)
T ss_pred             CCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhc------
Confidence            3445678999999999999998777788899999999999999999998754321    112 22222221100      


Q ss_pred             HHHHHhCCCchhHHHHHHHHHHHHHHh-cCCeEEEEEeCCCCc
Q 035585           97 EIAEKLGLEFSEEAESRRASRLYERLK-KEKMILVILDNIWKY  138 (183)
Q Consensus        97 ~i~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~llvlD~~~~~  138 (183)
                            +.... ......+..++..+. .+++.+|+|||+|.+
T Consensus       257 ------g~~~~-ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l  292 (852)
T TIGR03345       257 ------GASVK-GEFENRLKSVIDEVKASPQPIILFIDEAHTL  292 (852)
T ss_pred             ------ccccc-hHHHHHHHHHHHHHHhcCCCeEEEEeChHHh
Confidence                  00011 111223344444443 357899999999866

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=98.74  E-value=3.8e-08  Score=78.81  Aligned_cols=98  Identities=23%  Similarity=0.345  Sum_probs=61.0

Q ss_pred             cCCCcccccchHHHHHHHHHHhc----c---------CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585           21 SNKGYEAFKSRLSTLKSIQDALT----D---------VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ   87 (183)
Q Consensus        21 ~~~~~~~~~gR~~~l~~l~~~l~----~---------~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~   87 (183)
                      |.-....+.|++++.+.+.+++.    +         ..+..++|+|++|+|||++++.+++.....       |+.+..
T Consensus       117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~-------~~~v~~  189 (364)
T TIGR01242       117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT-------FIRVVG  189 (364)
T ss_pred             CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCC-------EEecch
Confidence            33344567899999999988764    1         235669999999999999999999876543       122211


Q ss_pred             CcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585           88 TPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY  138 (183)
Q Consensus        88 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~  138 (183)
                          ..+.....   +      ........++.......+.+|+|||+|..
T Consensus       190 ----~~l~~~~~---g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l  227 (364)
T TIGR01242       190 ----SELVRKYI---G------EGARLVREIFELAKEKAPSIIFIDEIDAI  227 (364)
T ss_pred             ----HHHHHHhh---h------HHHHHHHHHHHHHHhcCCcEEEhhhhhhh
Confidence                11111110   0      11122334444444467889999999865

Many proteins may score above the trusted cutoff because an internal

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.73  E-value=1.5e-07  Score=76.27  Aligned_cols=144  Identities=14%  Similarity=0.201  Sum_probs=78.8

Q ss_pred             hcCCCcccccchHHHHHHHHHHhccCCc-cEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEe-cCCcCHHHHHHH
Q 035585           20 KSNKGYEAFKSRLSTLKSIQDALTDVNV-NIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEV-SQTPDIKKIHGE   97 (183)
Q Consensus        20 ~~~~~~~~~~gR~~~l~~l~~~l~~~~~-~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~   97 (183)
                      ..|.....++|.+.....|.+++.+.+. +.++++||+|+||||+|+.+++.+.........-|... ......-..++.
T Consensus        10 ~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~   89 (397)
T PRK14955         10 YRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRD   89 (397)
T ss_pred             cCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHH
Confidence            4456677888999999999998886555 45889999999999999999988754211100000000 000000011111


Q ss_pred             HHHHhCCC-----chhHHHHHHHHHHHHHH----hcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecC
Q 035585           98 IAEKLGLE-----FSEEAESRRASRLYERL----KKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARD  163 (183)
Q Consensus        98 i~~~l~~~-----~~~~~~~~~~~~~~~~~----~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~  163 (183)
                      +.......     .......+.+..+.+.+    ....+.++|+||++.+.  .++.++..+....+.+.+|+++.+
T Consensus        90 ~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~  166 (397)
T PRK14955         90 FDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTE  166 (397)
T ss_pred             HhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence            11100000     00000011222222322    22567799999999774  455666666655567776666643

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=98.72  E-value=5.1e-08  Score=74.58  Aligned_cols=28  Identities=29%  Similarity=0.293  Sum_probs=24.0

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      ....++++|++|+||||+|+.++..+..
T Consensus        41 ~~~~vll~GppGtGKTtlA~~ia~~l~~   68 (261)
T TIGR02881        41 QVLHMIFKGNPGTGKTTVARILGKLFKE   68 (261)
T ss_pred             CcceEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            4457899999999999999999987754

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.71  E-value=2.1e-07  Score=78.47  Aligned_cols=57  Identities=16%  Similarity=0.173  Sum_probs=46.6

Q ss_pred             hhhhcCCCcccccchHHHHHHHHHHhccCC-ccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           17 VWLKSNKGYEAFKSRLSTLKSIQDALTDVN-VNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        17 ~~~~~~~~~~~~~gR~~~l~~l~~~l~~~~-~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      .....|.....++|.+.....|.+++.+.+ .+.++++|++|+||||+|+.+++.+..
T Consensus         7 a~KyRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C   64 (624)
T PRK14959          7 TARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC   64 (624)
T ss_pred             HHHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence            344456677788999998888998887654 578999999999999999999987753

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=98.70  E-value=1.7e-07  Score=78.72  Aligned_cols=58  Identities=19%  Similarity=0.158  Sum_probs=47.8

Q ss_pred             hhhhhcCCCcccccchHHHHHHHHHHhccC-CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           16 EVWLKSNKGYEAFKSRLSTLKSIQDALTDV-NVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        16 ~~~~~~~~~~~~~~gR~~~l~~l~~~l~~~-~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      ......|.....++|++..++.|.+++.+. -++.++++||+|+||||+|+.++..+..
T Consensus         6 ~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C   64 (605)
T PRK05896          6 FYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINC   64 (605)
T ss_pred             HHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence            344456777888999999999999988654 3467999999999999999999988754

>PRK07471 DNA polymerase III subunit delta'; Validated

Probab=98.70  E-value=7.9e-09  Score=82.48  Aligned_cols=144  Identities=15%  Similarity=0.056  Sum_probs=82.3

Q ss_pred             CCCcccccchHHHHHHHHHHhccCCc-cEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceE----EEEecCCcCHHHHHH
Q 035585           22 NKGYEAFKSRLSTLKSIQDALTDVNV-NIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVV----FSEVSQTPDIKKIHG   96 (183)
Q Consensus        22 ~~~~~~~~gR~~~l~~l~~~l~~~~~-~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~   96 (183)
                      |.....++|.+.....|.+.+.+.+. +.++++|+.|+||+++|..++..+-.......-.    -.++...... ..++
T Consensus        15 P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c-~~c~   93 (365)
T PRK07471         15 PRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDH-PVAR   93 (365)
T ss_pred             CCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCC-hHHH
Confidence            44566789999999999998886654 4699999999999999999998875432110000    0000000000 0111


Q ss_pred             HHHHHhC-----------CCc---hhHHHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcE
Q 035585           97 EIAEKLG-----------LEF---SEEAESRRASRLYERLK----KEKMILVILDNIWKYL--DLETVGIPFGDDHRGCK  156 (183)
Q Consensus        97 ~i~~~l~-----------~~~---~~~~~~~~~~~~~~~~~----~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~  156 (183)
                      .+...-.           ...   ...-..+.++.+...+.    .+++.++|||+++.+.  ..+.++..+.....++.
T Consensus        94 ~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~  173 (365)
T PRK07471         94 RIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSL  173 (365)
T ss_pred             HHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeE
Confidence            1111000           000   00011122333333332    3677899999999774  45566666665556777


Q ss_pred             EEEEecChHH
Q 035585          157 LLLTARDCNV  166 (183)
Q Consensus       157 iiitsr~~~~  166 (183)
                      +|++|++.+.
T Consensus       174 ~IL~t~~~~~  183 (365)
T PRK07471        174 FLLVSHAPAR  183 (365)
T ss_pred             EEEEECCchh
Confidence            8888887653

>TIGR00767 rho transcription termination factor Rho

Probab=98.69  E-value=1.8e-07  Score=74.89  Aligned_cols=93  Identities=11%  Similarity=0.122  Sum_probs=62.0

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC--cCHHHHHHHHHHHh-----CCCchhH-HHHHHHH
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT--PDIKKIHGEIAEKL-----GLEFSEE-AESRRAS  116 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~l-----~~~~~~~-~~~~~~~  116 (183)
                      ...+.++|+|++|+|||||++.+++.+... +|+..+|+.+...  ....++.+.+...+     ....... .......
T Consensus       166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~  244 (415)
T TIGR00767       166 GKGQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI  244 (415)
T ss_pred             CCCCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence            345779999999999999999999988765 6666778777755  67788888884333     3211110 1111222


Q ss_pred             H-HHHHHhcCCeEEEEEeCCCCc
Q 035585          117 R-LYERLKKEKMILVILDNIWKY  138 (183)
Q Consensus       117 ~-~~~~~~~~~~~llvlD~~~~~  138 (183)
                      . ......++++++|++|+++..
T Consensus       245 e~Ae~~~~~GkdVVLlIDEitR~  267 (415)
T TIGR00767       245 EKAKRLVEHKKDVVILLDSITRL  267 (415)
T ss_pred             HHHHHHHHcCCCeEEEEEChhHH
Confidence            2 222334589999999999855

Members of this family differ in the specificity of RNA binding.

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=98.69  E-value=1.4e-07  Score=76.00  Aligned_cols=120  Identities=10%  Similarity=0.057  Sum_probs=72.8

Q ss_pred             ccccchHHHHHHHHHHhccC----------CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcc------------------
Q 035585           26 EAFKSRLSTLKSIQDALTDV----------NVNIVGVYGMGGIGKTTLVKEFARQASEEKLF------------------   77 (183)
Q Consensus        26 ~~~~gR~~~l~~l~~~l~~~----------~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~------------------   77 (183)
                      ..++|.+..++.|.+++...          -++.++++||+|+|||++|+.++..+-.....                  
T Consensus         5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h   84 (394)
T PRK07940          5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH   84 (394)
T ss_pred             hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence            35678888888899888754          35779999999999999999998876432100                  


Q ss_pred             cceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--cccccCcCCCCC
Q 035585           78 DQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLK----KEKMILVILDNIWKYL--DLETVGIPFGDD  151 (183)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~llvlD~~~~~~--~~~~l~~~~~~~  151 (183)
                      ..+.++......                    ...+.++.+.+...    ..+..+++|||++.+.  ..+.++..+...
T Consensus        85 pD~~~i~~~~~~--------------------i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep  144 (394)
T PRK07940         85 PDVRVVAPEGLS--------------------IGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEP  144 (394)
T ss_pred             CCEEEecccccc--------------------CCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcC
Confidence            001111111000                    00111222322221    2566789999999774  345565666555


Q ss_pred             CCCcEEEEEecChH
Q 035585          152 HRGCKLLLTARDCN  165 (183)
Q Consensus       152 ~~~~~iiitsr~~~  165 (183)
                      .+++.+|++|.+.+
T Consensus       145 ~~~~~fIL~a~~~~  158 (394)
T PRK07940        145 PPRTVWLLCAPSPE  158 (394)
T ss_pred             CCCCeEEEEECChH
Confidence            66777777777644

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=1.3e-07  Score=73.81  Aligned_cols=94  Identities=24%  Similarity=0.305  Sum_probs=65.3

Q ss_pred             cccccchHHHHHHHHHHhc-------------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCH
Q 035585           25 YEAFKSRLSTLKSIQDALT-------------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDI   91 (183)
Q Consensus        25 ~~~~~gR~~~l~~l~~~l~-------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (183)
                      ..+.=|-+++++.|.+..+             =.++.-|++|||||+|||.||++++++-...       |+.+...   
T Consensus       150 Y~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At-------FIrvvgS---  219 (406)
T COG1222         150 YEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT-------FIRVVGS---  219 (406)
T ss_pred             hhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce-------EEEeccH---
Confidence            3344567777888877654             1466789999999999999999999976553       3333331   


Q ss_pred             HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585           92 KKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY  138 (183)
Q Consensus        92 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~  138 (183)
                           .+.+.+..     .....++.++...++..+.+|+|||+|..
T Consensus       220 -----ElVqKYiG-----EGaRlVRelF~lArekaPsIIFiDEIDAI  256 (406)
T COG1222         220 -----ELVQKYIG-----EGARLVRELFELAREKAPSIIFIDEIDAI  256 (406)
T ss_pred             -----HHHHHHhc-----cchHHHHHHHHHHhhcCCeEEEEechhhh
Confidence                 22222211     13456678888888899999999999843

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.68  E-value=1.2e-07  Score=71.49  Aligned_cols=60  Identities=15%  Similarity=0.147  Sum_probs=38.2

Q ss_pred             HHHHHHhcCCeEEEEEeCCCCccc------ccccCcCCCCCCCCcEEEEEecChHHHhhcCCCCcchh
Q 035585          117 RLYERLKKEKMILVILDNIWKYLD------LETVGIPFGDDHRGCKLLLTARDCNVLLNMSLCRSEEE  178 (183)
Q Consensus       117 ~~~~~~~~~~~~llvlD~~~~~~~------~~~l~~~~~~~~~~~~iiitsr~~~~~~~~~~~~~~~~  178 (183)
                      -++.+...+++-+|+|||.-..-+      +-.++..+...  |+.|+++|||-+.+........+..
T Consensus       148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e--g~tIl~vtHDL~~v~~~~D~vi~Ln  213 (254)
T COG1121         148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE--GKTVLMVTHDLGLVMAYFDRVICLN  213 (254)
T ss_pred             HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCcHHhHhhCCEEEEEc
Confidence            344444458899999999753322      22233333333  8999999999998886655544433

>PRK09376 rho transcription termination factor Rho; Provisional

Probab=98.68  E-value=1.4e-07  Score=75.16  Aligned_cols=92  Identities=13%  Similarity=0.146  Sum_probs=60.0

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCc--CHHHHHHHHHHHhCCC---chhHHHH---HHHHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTP--DIKKIHGEIAEKLGLE---FSEEAES---RRASR  117 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~l~~~---~~~~~~~---~~~~~  117 (183)
                      +.+-.+|+|++|+|||||++.+++..... +|+..+|+.+....  ...++...+...+...   .+.....   .....
T Consensus       168 kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie  246 (416)
T PRK09376        168 KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIE  246 (416)
T ss_pred             cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHH
Confidence            44678899999999999999999988876 67778888777664  5666666665322111   1111111   11112


Q ss_pred             HHHHH-hcCCeEEEEEeCCCCc
Q 035585          118 LYERL-KKEKMILVILDNIWKY  138 (183)
Q Consensus       118 ~~~~~-~~~~~~llvlD~~~~~  138 (183)
                      ..+++ ..++.++|++|+++..
T Consensus       247 ~Ae~~~e~G~dVlL~iDsItR~  268 (416)
T PRK09376        247 KAKRLVEHGKDVVILLDSITRL  268 (416)
T ss_pred             HHHHHHHcCCCEEEEEEChHHH
Confidence            22222 3579999999999754

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=98.67  E-value=1.4e-07  Score=70.62  Aligned_cols=125  Identities=15%  Similarity=0.216  Sum_probs=80.2

Q ss_pred             hhhhhcCCCcccccchHHHHHHHHHHhc----cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC--c
Q 035585           16 EVWLKSNKGYEAFKSRLSTLKSIQDALT----DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT--P   89 (183)
Q Consensus        16 ~~~~~~~~~~~~~~gR~~~l~~l~~~l~----~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~--~   89 (183)
                      ++....+.....++|-+.+.+.|.+...    ..+...++|||..|+|||++++++.+.+..+.    ...+.+...  .
T Consensus        17 ~i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k~~L~   92 (249)
T PF05673_consen   17 PIKHPDPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSKEDLG   92 (249)
T ss_pred             ecCCCCCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECHHHhc
Confidence            3444445666778898888888876543    56778899999999999999999999887752    333444332  2


Q ss_pred             CHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHh-cCCeEEEEEeCCC--Cc-cc---ccccCc-CCCCCCCCcEEEEEe
Q 035585           90 DIKKIHGEIAEKLGLEFSEEAESRRASRLYERLK-KEKMILVILDNIW--KY-LD---LETVGI-PFGDDHRGCKLLLTA  161 (183)
Q Consensus        90 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~llvlD~~~--~~-~~---~~~l~~-~~~~~~~~~~iiits  161 (183)
                      .+                        ..++..++ .+.+.||++||+.  .. ..   +..++. .+...+.+..|..||
T Consensus        93 ~l------------------------~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATS  148 (249)
T PF05673_consen   93 DL------------------------PELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATS  148 (249)
T ss_pred             cH------------------------HHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEec
Confidence            22                        22333332 3689999999974  11 11   222221 222344466777888


Q ss_pred             cChHHHh
Q 035585          162 RDCNVLL  168 (183)
Q Consensus       162 r~~~~~~  168 (183)
                      ..++++.
T Consensus       149 NRRHLv~  155 (249)
T PF05673_consen  149 NRRHLVP  155 (249)
T ss_pred             chhhccc
Confidence            8777766

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=98.66  E-value=1.2e-07  Score=83.55  Aligned_cols=102  Identities=15%  Similarity=0.287  Sum_probs=65.8

Q ss_pred             CcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhc----ccc-eEEEEecCCcCHHHHHHHH
Q 035585           24 GYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKL----FDQ-VVFSEVSQTPDIKKIHGEI   98 (183)
Q Consensus        24 ~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~i   98 (183)
                      .-..++||+.++..+...|.+.....++|+|++|+|||++++.++.++.....    ... ++++++..          +
T Consensus       171 ~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~----------l  240 (852)
T TIGR03346       171 KLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGA----------L  240 (852)
T ss_pred             CCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHH----------H
Confidence            34568999999999999998777788899999999999999999988754311    112 33332211          1


Q ss_pred             HHHhCCCchhHHHHHHHHHHHHHHh-cCCeEEEEEeCCCCc
Q 035585           99 AEKLGLEFSEEAESRRASRLYERLK-KEKMILVILDNIWKY  138 (183)
Q Consensus        99 ~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~llvlD~~~~~  138 (183)
                      ..  +..... .....+..++..+. ..++.+|+|||+|..
T Consensus       241 ~a--~~~~~g-~~e~~l~~~l~~~~~~~~~~ILfIDEih~l  278 (852)
T TIGR03346       241 IA--GAKYRG-EFEERLKAVLNEVTKSEGQIILFIDELHTL  278 (852)
T ss_pred             hh--cchhhh-hHHHHHHHHHHHHHhcCCCeEEEeccHHHh
Confidence            00  000011 12223444555443 256899999999865

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=98.65  E-value=7.4e-08  Score=76.56  Aligned_cols=141  Identities=12%  Similarity=0.066  Sum_probs=79.9

Q ss_pred             CCCcccccchHHHHHHHHHHhccCC-ccEEEEEeCCCCcHHHHHHHHHhHHhhhhc--ccceEEEEecCCcCHHHHHHHH
Q 035585           22 NKGYEAFKSRLSTLKSIQDALTDVN-VNIVGVYGMGGIGKTTLVKEFARQASEEKL--FDQVVFSEVSQTPDIKKIHGEI   98 (183)
Q Consensus        22 ~~~~~~~~gR~~~l~~l~~~l~~~~-~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i   98 (183)
                      |.....++|.++....|...+.+.+ ++.++++|+.|+||||++..++..+-....  +.....   ......-..++.+
T Consensus        19 P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~---~~~~~~c~~c~~i   95 (351)
T PRK09112         19 PSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETL---ADPDPASPVWRQI   95 (351)
T ss_pred             CCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcccc---CCCCCCCHHHHHH
Confidence            4566778999999999999988555 356999999999999999999988754210  111100   0000001122222


Q ss_pred             HHH-------hCCC--ch-----hHHHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEE
Q 035585           99 AEK-------LGLE--FS-----EEAESRRASRLYERLK----KEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLL  158 (183)
Q Consensus        99 ~~~-------l~~~--~~-----~~~~~~~~~~~~~~~~----~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~ii  158 (183)
                      ...       +..+  ..     ..-..+.+..+.+.+.    .++..++|||+++.+.  ..+.++..+......+.+|
T Consensus        96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fi  175 (351)
T PRK09112         96 AQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFI  175 (351)
T ss_pred             HcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEE
Confidence            211       0000  00     0001122333333332    3577899999999774  3555555555544566666


Q ss_pred             EEecChH
Q 035585          159 LTARDCN  165 (183)
Q Consensus       159 itsr~~~  165 (183)
                      ++|+...
T Consensus       176 Lit~~~~  182 (351)
T PRK09112        176 LISHSSG  182 (351)
T ss_pred             EEECChh
Confidence            6665543

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=98.65  E-value=3.2e-07  Score=66.69  Aligned_cols=108  Identities=15%  Similarity=0.111  Sum_probs=61.6

Q ss_pred             HHHHHhccCCc-cEEEEEeCCCCcHHHHHHHHHhHHhhhhccc-------------------ceEEEEecCCcCHHHHHH
Q 035585           37 SIQDALTDVNV-NIVGVYGMGGIGKTTLVKEFARQASEEKLFD-------------------QVVFSEVSQTPDIKKIHG   96 (183)
Q Consensus        37 ~l~~~l~~~~~-~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~   96 (183)
                      .|.+.+.+.+. +.++++|++|+|||++++.+...+.......                   ...++.......      
T Consensus         3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~------   76 (188)
T TIGR00678         3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSI------   76 (188)
T ss_pred             HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcC------
Confidence            34555544444 6799999999999999999988875421000                   011111111000      


Q ss_pred             HHHHHhCCCchhHHHHHHHHHHHHHH----hcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecCh
Q 035585           97 EIAEKLGLEFSEEAESRRASRLYERL----KKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDC  164 (183)
Q Consensus        97 ~i~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~  164 (183)
                                    ..+.+..+.+.+    ...++.++||||++.+.  ..+.++..+....+.+.+|+++.+.
T Consensus        77 --------------~~~~i~~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~  136 (188)
T TIGR00678        77 --------------KVDQVRELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSP  136 (188)
T ss_pred             --------------CHHHHHHHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECCh
Confidence                          011122222222    12677899999998774  3555666665555567777777654

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]

Probab=98.65  E-value=4.2e-07  Score=71.58  Aligned_cols=110  Identities=22%  Similarity=0.291  Sum_probs=79.1

Q ss_pred             ccccchHHHHHHHHHHhccCC---ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHh
Q 035585           26 EAFKSRLSTLKSIQDALTDVN---VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKL  102 (183)
Q Consensus        26 ~~~~gR~~~l~~l~~~l~~~~---~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l  102 (183)
                      ..+.+|+.++..+...+.+.+   +..+.|+|..|+|||.+.+++++....     ..+|+++-...+...++..|+...
T Consensus         6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~IL~~~   80 (438)
T KOG2543|consen    6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEKILNKS   80 (438)
T ss_pred             cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHHHHHHh
Confidence            467899999999999987433   234689999999999999999988632     357999999999999999999988


Q ss_pred             C-CCchhHHHH---HHHHHHHHHHh-------cCCeEEEEEeCCCCccc
Q 035585          103 G-LEFSEEAES---RRASRLYERLK-------KEKMILVILDNIWKYLD  140 (183)
Q Consensus       103 ~-~~~~~~~~~---~~~~~~~~~~~-------~~~~~llvlD~~~~~~~  140 (183)
                      . ...++....   +.+......+.       .++.++||+|+++...+
T Consensus        81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD  129 (438)
T KOG2543|consen   81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRD  129 (438)
T ss_pred             ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhc
Confidence            4 332222111   22222222221       24689999999986654

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.64  E-value=4.6e-07  Score=77.03  Aligned_cols=141  Identities=12%  Similarity=0.123  Sum_probs=80.5

Q ss_pred             hhcCCCcccccchHHHHHHHHHHhccCC-ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHH
Q 035585           19 LKSNKGYEAFKSRLSTLKSIQDALTDVN-VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGE   97 (183)
Q Consensus        19 ~~~~~~~~~~~gR~~~l~~l~~~l~~~~-~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (183)
                      ...|.....++|.+.....|..++...+ .+.++++|++|+||||+|+.++..+......... .    ..+..-..++.
T Consensus         9 kyRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~-~----~~Cg~C~~C~~   83 (620)
T PRK14948          9 KYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPT-P----EPCGKCELCRA   83 (620)
T ss_pred             HhCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCC-C----CCCcccHHHHH
Confidence            3456677788999999999999887554 3688999999999999999999987543111000 0    00010111222


Q ss_pred             HHHHhCCCc-----hhHHHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecCh
Q 035585           98 IAEKLGLEF-----SEEAESRRASRLYERLK----KEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDC  164 (183)
Q Consensus        98 i~~~l~~~~-----~~~~~~~~~~~~~~~~~----~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~  164 (183)
                      +........     ......+.++.+...+.    ..+..++||||++.+.  ..+.|+..+......+.+|+++.+.
T Consensus        84 i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~  161 (620)
T PRK14948         84 IAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDP  161 (620)
T ss_pred             HhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCCh
Confidence            211111000     00011122233332221    2566799999999774  4556666665555566666666544

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.63  E-value=4.1e-07  Score=72.92  Aligned_cols=57  Identities=16%  Similarity=0.264  Sum_probs=46.9

Q ss_pred             hhhhcCCCcccccchHHHHHHHHHHhccCC-ccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           17 VWLKSNKGYEAFKSRLSTLKSIQDALTDVN-VNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        17 ~~~~~~~~~~~~~gR~~~l~~l~~~l~~~~-~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      .....|.....++|.+...+.+.+.+.+.+ ++.++++|++|+|||++++.+.+.+..
T Consensus         8 ~~k~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~   65 (367)
T PRK14970          8 ARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQ   65 (367)
T ss_pred             HHHHCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            334556777788999999999999987544 458999999999999999999887654

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=98.62  E-value=3.1e-07  Score=72.06  Aligned_cols=122  Identities=18%  Similarity=0.153  Sum_probs=74.1

Q ss_pred             ccchHHHHHHHHHHhc-cCCcc-EEEEEeCCCCcHHHHHHHHHhHHhhhhc-------------------ccceEEEEec
Q 035585           28 FKSRLSTLKSIQDALT-DVNVN-IVGVYGMGGIGKTTLVKEFARQASEEKL-------------------FDQVVFSEVS   86 (183)
Q Consensus        28 ~~gR~~~l~~l~~~l~-~~~~~-~v~i~G~~G~GKTtL~~~~~~~~~~~~~-------------------~~~~~~~~~~   86 (183)
                      +++-+.....+..+.. ..+.+ .++++||+|+||||+|..+++.+.....                   ...+..++.+
T Consensus         3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s   82 (325)
T COG0470           3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS   82 (325)
T ss_pred             cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence            3455666667776665 33344 5999999999999999999988864321                   1123333443


Q ss_pred             CCcC---HHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEe
Q 035585           87 QTPD---IKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTA  161 (183)
Q Consensus        87 ~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiits  161 (183)
                      ....   ..+..+.+.+......                ...+..+++||++|.+.  ..+.++..+-.....+.+|++|
T Consensus        83 ~~~~~~i~~~~vr~~~~~~~~~~----------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~  146 (325)
T COG0470          83 DLRKIDIIVEQVRELAEFLSESP----------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILIT  146 (325)
T ss_pred             ccCCCcchHHHHHHHHHHhccCC----------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEc
Confidence            3322   1222222222211110                12678899999999774  4556666666666778888888


Q ss_pred             cChH
Q 035585          162 RDCN  165 (183)
Q Consensus       162 r~~~  165 (183)
                      .+..
T Consensus       147 n~~~  150 (325)
T COG0470         147 NDPS  150 (325)
T ss_pred             CChh
Confidence            7443

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=98.62  E-value=2.4e-07  Score=79.89  Aligned_cols=54  Identities=26%  Similarity=0.340  Sum_probs=43.6

Q ss_pred             hhcCCCcccccchHHHHH---HHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           19 LKSNKGYEAFKSRLSTLK---SIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        19 ~~~~~~~~~~~gR~~~l~---~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ...|.....|+|++..+.   .+...+...+.+.+.++|++|+||||+|+.+++...
T Consensus        21 k~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~   77 (725)
T PRK13341         21 RLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR   77 (725)
T ss_pred             hcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence            334666677899998884   566777777778899999999999999999998754

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=98.62  E-value=1.1e-07  Score=72.11  Aligned_cols=55  Identities=22%  Similarity=0.276  Sum_probs=46.2

Q ss_pred             hcCCCcccccchHHHHHHHHHHhc-----cCCccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           20 KSNKGYEAFKSRLSTLKSIQDALT-----DVNVNIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        20 ~~~~~~~~~~gR~~~l~~l~~~l~-----~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      ..|.....|+|.++..+.|.-++.     +.....++++||+|.||||||..+++++...
T Consensus        20 lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn   79 (332)
T COG2255          20 LRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN   79 (332)
T ss_pred             cCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC
Confidence            346777889999988888877665     4566789999999999999999999998765

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=98.62  E-value=1.6e-07  Score=75.76  Aligned_cols=95  Identities=23%  Similarity=0.331  Sum_probs=59.8

Q ss_pred             CcccccchHHHHHHHHHHhc----c---------CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcC
Q 035585           24 GYEAFKSRLSTLKSIQDALT----D---------VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPD   90 (183)
Q Consensus        24 ~~~~~~gR~~~l~~l~~~l~----~---------~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (183)
                      ....+.|++++++.+.+.+.    .         ..+..++|+|++|+|||++|+.+++.....       |+.+..   
T Consensus       129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~-------~i~v~~---  198 (389)
T PRK03992        129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT-------FIRVVG---  198 (389)
T ss_pred             CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC-------EEEeeh---
Confidence            34456789999988888653    1         345679999999999999999999876532       222211   


Q ss_pred             HHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585           91 IKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY  138 (183)
Q Consensus        91 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~  138 (183)
                       .    .+......     ........++.......+.+|+|||+|..
T Consensus       199 -~----~l~~~~~g-----~~~~~i~~~f~~a~~~~p~IlfiDEiD~l  236 (389)
T PRK03992        199 -S----ELVQKFIG-----EGARLVRELFELAREKAPSIIFIDEIDAI  236 (389)
T ss_pred             -H----HHhHhhcc-----chHHHHHHHHHHHHhcCCeEEEEechhhh
Confidence             1    11111110     11223344555555567889999999865

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.61  E-value=6.5e-07  Score=74.12  Aligned_cols=56  Identities=18%  Similarity=0.177  Sum_probs=45.8

Q ss_pred             hhhhcCCCcccccchHHHHHHHHHHhccCCc-cEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           17 VWLKSNKGYEAFKSRLSTLKSIQDALTDVNV-NIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        17 ~~~~~~~~~~~~~gR~~~l~~l~~~l~~~~~-~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .....|.....++|.+.....|.+++.+.+. +.++++|++|+||||+|+.++..+.
T Consensus         7 ~~kyRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~   63 (486)
T PRK14953          7 ARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLN   63 (486)
T ss_pred             HHhhCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3444666777889999999999999885544 4578899999999999999988765

>PRK06893 DNA replication initiation factor; Validated

Probab=98.61  E-value=1.4e-07  Score=70.80  Aligned_cols=39  Identities=15%  Similarity=0.231  Sum_probs=30.4

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEec
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVS   86 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~   86 (183)
                      ..+.+.|+|++|+|||+|+..+++....+  ...+.|+.+.
T Consensus        38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~   76 (229)
T PRK06893         38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLS   76 (229)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHH
Confidence            34678999999999999999999987654  3345666653

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=98.61  E-value=5.2e-07  Score=77.23  Aligned_cols=58  Identities=16%  Similarity=0.182  Sum_probs=47.5

Q ss_pred             hhhhhcCCCcccccchHHHHHHHHHHhccCC-ccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           16 EVWLKSNKGYEAFKSRLSTLKSIQDALTDVN-VNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        16 ~~~~~~~~~~~~~~gR~~~l~~l~~~l~~~~-~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      ......|.....++|.+.....|.+++...+ .+.++++||+|+|||++|+.++..+-.
T Consensus         8 l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC   66 (725)
T PRK07133          8 LYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNC   66 (725)
T ss_pred             HHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence            4445567778889999999999999887544 466799999999999999999887643

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=98.60  E-value=1.8e-07  Score=75.89  Aligned_cols=108  Identities=20%  Similarity=0.230  Sum_probs=67.9

Q ss_pred             ccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCC
Q 035585           26 EAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLE  105 (183)
Q Consensus        26 ~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~  105 (183)
                      ..++..+..++.+...+..  ...+.++|++|+|||++|+.+++.+.....+..+.|+.+....+...+...+.-. ...
T Consensus       175 ~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~vg  251 (459)
T PRK11331        175 NDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-GVG  251 (459)
T ss_pred             hcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC-CCC
Confidence            3466778888888888853  4688889999999999999999888654445567777877766655443322100 000


Q ss_pred             chhHHHHHHHHHHHHHHhc--CCeEEEEEeCCCCc
Q 035585          106 FSEEAESRRASRLYERLKK--EKMILVILDNIWKY  138 (183)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~--~~~~llvlD~~~~~  138 (183)
                      .  ......+..+......  .++.+|||||++..
T Consensus       252 y--~~~~G~f~~~~~~A~~~p~~~~vliIDEINRa  284 (459)
T PRK11331        252 F--RRKDGIFYNFCQQAKEQPEKKYVFIIDEINRA  284 (459)
T ss_pred             e--EecCchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence            0  0000112222222221  46899999998744

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.60  E-value=5.4e-07  Score=76.39  Aligned_cols=55  Identities=22%  Similarity=0.261  Sum_probs=45.8

Q ss_pred             hhcCCCcccccchHHHHHHHHHHhccCCc-cEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           19 LKSNKGYEAFKSRLSTLKSIQDALTDVNV-NIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        19 ~~~~~~~~~~~gR~~~l~~l~~~l~~~~~-~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      ...|.....++|.+.....|.+.+.+++. +.++++|++|+||||+|+.++..+..
T Consensus         9 kyRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c   64 (620)
T PRK14954          9 KYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNC   64 (620)
T ss_pred             HHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            34566777889999999999998876555 55899999999999999999988754

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.60  E-value=5.4e-07  Score=76.34  Aligned_cols=140  Identities=12%  Similarity=0.191  Sum_probs=79.5

Q ss_pred             hhcCCCcccccchHHHHHHHHHHhccCCc-cEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHH
Q 035585           19 LKSNKGYEAFKSRLSTLKSIQDALTDVNV-NIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGE   97 (183)
Q Consensus        19 ~~~~~~~~~~~gR~~~l~~l~~~l~~~~~-~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (183)
                      ...|.....++|.+.....|.+++.+.+. +.++++|++|+||||+++.++..+........      ......-..++.
T Consensus         9 kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~------~~~c~~c~~c~~   82 (585)
T PRK14950          9 KWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPK------GRPCGTCEMCRA   82 (585)
T ss_pred             HhCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCCccCHHHHH
Confidence            34566777889999999999988875443 56799999999999999999987753211000      000011112222


Q ss_pred             HHHHhCCCch-----hHHHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecCh
Q 035585           98 IAEKLGLEFS-----EEAESRRASRLYERLK----KEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDC  164 (183)
Q Consensus        98 i~~~l~~~~~-----~~~~~~~~~~~~~~~~----~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~  164 (183)
                      +.........     .....+.+..+.+.+.    ..++.++||||++.+.  ..+.|+..+......+.+|+++.+.
T Consensus        83 i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~  160 (585)
T PRK14950         83 IAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEV  160 (585)
T ss_pred             HhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence            2221111100     0001111222222221    2567899999998773  3555655555555667777766543

>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A

Probab=98.59  E-value=7.2e-07  Score=63.44  Aligned_cols=123  Identities=14%  Similarity=0.185  Sum_probs=74.6

Q ss_pred             chHHHHHHHHHHhccCCc-cEEEEEeCCCCcHHHHHHHHHhHHhhhhcc------------------cceEEEEecCCcC
Q 035585           30 SRLSTLKSIQDALTDVNV-NIVGVYGMGGIGKTTLVKEFARQASEEKLF------------------DQVVFSEVSQTPD   90 (183)
Q Consensus        30 gR~~~l~~l~~~l~~~~~-~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~   90 (183)
                      |-++..+.|.+.+.+.+. +.++++|+.|+||+++|..++..+-.....                  ..+.++.......
T Consensus         1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~   80 (162)
T PF13177_consen    1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK   80 (162)
T ss_dssp             S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred             CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence            446677778887775544 568999999999999999999877443221                  1133332222100


Q ss_pred             HHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecCh
Q 035585           91 IKKIHGEIAEKLGLEFSEEAESRRASRLYERLK----KEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDC  164 (183)
Q Consensus        91 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~  164 (183)
                                        .-..+.+..+...+.    ..+.-++|||+++.+.  ..+.|+..+.....++.+|++|.+.
T Consensus        81 ------------------~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~  142 (162)
T PF13177_consen   81 ------------------SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNP  142 (162)
T ss_dssp             ------------------SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred             ------------------hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence                              001122223333331    2578899999999773  5777777777777889999888877


Q ss_pred             H-HHhhc
Q 035585          165 N-VLLNM  170 (183)
Q Consensus       165 ~-~~~~~  170 (183)
                      + ++..+
T Consensus       143 ~~il~TI  149 (162)
T PF13177_consen  143 SKILPTI  149 (162)
T ss_dssp             GGS-HHH
T ss_pred             HHChHHH
Confidence            6 34433

...

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=98.59  E-value=1.3e-07  Score=68.18  Aligned_cols=107  Identities=23%  Similarity=0.223  Sum_probs=60.7

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEE-----EEecCCcCHHHHHHHHHHHhCCCchhHHHHHH-HHHH
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVF-----SEVSQTPDIKKIHGEIAEKLGLEFSEEAESRR-ASRL  118 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~  118 (183)
                      .+...++|.|++|+|||||++.+.......  -..+.|     ....+...                  .+..+. ...+
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~l   82 (177)
T cd03222          23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPN--GDNDEWDGITPVYKPQYID------------------LSGGELQRVAI   82 (177)
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCCCCC--CcEEEECCEEEEEEcccCC------------------CCHHHHHHHHH
Confidence            345799999999999999999998876542  111221     01112111                  111222 2223


Q ss_pred             HHHHhcCCeEEEEEeCCCCccccc---ccCcCCCC-CCC-CcEEEEEecChHHHhhcCC
Q 035585          119 YERLKKEKMILVILDNIWKYLDLE---TVGIPFGD-DHR-GCKLLLTARDCNVLLNMSL  172 (183)
Q Consensus       119 ~~~~~~~~~~llvlD~~~~~~~~~---~l~~~~~~-~~~-~~~iiitsr~~~~~~~~~~  172 (183)
                      ...+. .++-++++||.....+..   .+...+.. ... +..++++||+...+..+..
T Consensus        83 aral~-~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d  140 (177)
T cd03222          83 AAALL-RNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSD  140 (177)
T ss_pred             HHHHh-cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCC
Confidence            33333 678999999987554321   11122211 122 3579999999988775544

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.58  E-value=4.8e-07  Score=76.45  Aligned_cols=55  Identities=16%  Similarity=0.254  Sum_probs=45.5

Q ss_pred             hhcCCCcccccchHHHHHHHHHHhccCCc-cEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           19 LKSNKGYEAFKSRLSTLKSIQDALTDVNV-NIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        19 ~~~~~~~~~~~gR~~~l~~l~~~l~~~~~-~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      ...|.....++|.+.....|.+++.+.+. +.++++|++|+||||+++.++..+..
T Consensus         9 k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c   64 (576)
T PRK14965          9 KYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNC   64 (576)
T ss_pred             HhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcC
Confidence            34566777899999999999998876554 56799999999999999999988753

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=98.58  E-value=2e-07  Score=70.52  Aligned_cols=61  Identities=15%  Similarity=0.129  Sum_probs=39.5

Q ss_pred             HHHHHHHhcCCeEEEEEeCCCCcccccccCc---CCC--CCCCCcEEEEEecChHHHhhcCCCCcc
Q 035585          116 SRLYERLKKEKMILVILDNIWKYLDLETVGI---PFG--DDHRGCKLLLTARDCNVLLNMSLCRSE  176 (183)
Q Consensus       116 ~~~~~~~~~~~~~llvlD~~~~~~~~~~l~~---~~~--~~~~~~~iiitsr~~~~~~~~~~~~~~  176 (183)
                      .-++.....+++-+|++||..+..++.....   .+.  ....|..+|++.||.+++.+...+.+.
T Consensus       146 rv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~  211 (258)
T COG1120         146 RVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLIL  211 (258)
T ss_pred             HHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEE
Confidence            3344444458899999999876644322211   111  123477899999999999987775443

>TIGR03689 pup_AAA proteasome ATPase

Probab=98.58  E-value=3.8e-07  Score=75.49  Aligned_cols=53  Identities=26%  Similarity=0.306  Sum_probs=40.4

Q ss_pred             CCCcccccchHHHHHHHHHHhc-------------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           22 NKGYEAFKSRLSTLKSIQDALT-------------DVNVNIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        22 ~~~~~~~~gR~~~l~~l~~~l~-------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      .....++.|.+.+++.+.+.+.             -..++-++|+||+|+|||++++.+++.+...
T Consensus       178 ~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~  243 (512)
T TIGR03689       178 DVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQR  243 (512)
T ss_pred             CCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence            3344556678888888877643             1245679999999999999999999987653

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=98.57  E-value=2e-07  Score=67.38  Aligned_cols=125  Identities=22%  Similarity=0.237  Sum_probs=67.0

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC--CcCHHH------HHHHHHHHhCCC------chhHHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ--TPDIKK------IHGEIAEKLGLE------FSEEAE  111 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------~~~~i~~~l~~~------~~~~~~  111 (183)
                      +...++|.|++|+|||||++.+......   ..+.++++-..  ......      ...++++.++..      ....+.
T Consensus        24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~---~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~  100 (180)
T cd03214          24 AGEIVGILGPNGAGKSTLLKTLAGLLKP---SSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSG  100 (180)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence            4578999999999999999999886543   23333332111  111111      111234444322      111122


Q ss_pred             HHHHHHHHHHHhcCCeEEEEEeCCCCccc---ccccCcCCCCC-CC-CcEEEEEecChHHHhhcCCC
Q 035585          112 SRRASRLYERLKKEKMILVILDNIWKYLD---LETVGIPFGDD-HR-GCKLLLTARDCNVLLNMSLC  173 (183)
Q Consensus       112 ~~~~~~~~~~~~~~~~~llvlD~~~~~~~---~~~l~~~~~~~-~~-~~~iiitsr~~~~~~~~~~~  173 (183)
                      .+.....+.......+-++++||.....+   ...+...+... .. +..+|++||+.+.+..+...
T Consensus       101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~  167 (180)
T cd03214         101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADR  167 (180)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence            22222222222237889999999875533   22222222221 22 66899999999887655443

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=98.57  E-value=2.4e-07  Score=66.12  Aligned_cols=120  Identities=17%  Similarity=0.138  Sum_probs=63.4

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhh---ccc---ceEEEEecCCcCHHHHHHHHHHHhCC-CchhHHHHHHHH-H
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEK---LFD---QVVFSEVSQTPDIKKIHGEIAEKLGL-EFSEEAESRRAS-R  117 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~-~  117 (183)
                      +...++|.|++|+|||||++.+...+....   .+.   .+.|  +++.....  ...+.+.+.. .....+..+... .
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~--~~q~~~~~--~~tv~~nl~~~~~~~LS~G~~~rv~  101 (166)
T cd03223          26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLF--LPQRPYLP--LGTLREQLIYPWDDVLSGGEQQRLA  101 (166)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEE--ECCCCccc--cccHHHHhhccCCCCCCHHHHHHHH
Confidence            457899999999999999999988765321   011   1222  22222111  1122222211 111122222222 2


Q ss_pred             HHHHHhcCCeEEEEEeCCCCcccc---cccCcCCCCCCCCcEEEEEecChHHHhhcCCC
Q 035585          118 LYERLKKEKMILVILDNIWKYLDL---ETVGIPFGDDHRGCKLLLTARDCNVLLNMSLC  173 (183)
Q Consensus       118 ~~~~~~~~~~~llvlD~~~~~~~~---~~l~~~~~~~~~~~~iiitsr~~~~~~~~~~~  173 (183)
                      +...+. .++-++++||.....+.   ..+...+...  +..+|++||+..+.. ...+
T Consensus       102 laral~-~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~-~~d~  156 (166)
T cd03223         102 FARLLL-HKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK-FHDR  156 (166)
T ss_pred             HHHHHH-cCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh-hCCE
Confidence            333333 78899999998755432   2221222221  457999999988654 4443

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=98.57  E-value=7.8e-07  Score=73.08  Aligned_cols=54  Identities=20%  Similarity=0.260  Sum_probs=45.3

Q ss_pred             hcCCCcccccchHHHHHHHHHHhccCCc-cEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           20 KSNKGYEAFKSRLSTLKSIQDALTDVNV-NIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        20 ~~~~~~~~~~gR~~~l~~l~~~l~~~~~-~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      ..|.....++|.+..+..|.+++...+. +.++++|++|+|||++|+.++..+..
T Consensus        11 yRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c   65 (451)
T PRK06305         11 YRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNC   65 (451)
T ss_pred             hCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            3456777889999999999999875554 66889999999999999999988754

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=98.55  E-value=7.6e-07  Score=74.13  Aligned_cols=125  Identities=18%  Similarity=0.217  Sum_probs=78.3

Q ss_pred             hhcCCCcccccchHHHHHHHHHHhccCCcc-EEEEEeCCCCcHHHHHHHHHhHHhhhhccc-------------------
Q 035585           19 LKSNKGYEAFKSRLSTLKSIQDALTDVNVN-IVGVYGMGGIGKTTLVKEFARQASEEKLFD-------------------   78 (183)
Q Consensus        19 ~~~~~~~~~~~gR~~~l~~l~~~l~~~~~~-~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~-------------------   78 (183)
                      ...|.....++|-+.....|...+.+.+.+ .++++|++|+||||+|+.++..+-......                   
T Consensus         7 KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~   86 (535)
T PRK08451          7 KYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHI   86 (535)
T ss_pred             HHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCC
Confidence            345567778899999999999988755554 568999999999999999988774321100                   


Q ss_pred             ceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH----hcCCeEEEEEeCCCCcc--cccccCcCCCCCC
Q 035585           79 QVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERL----KKEKMILVILDNIWKYL--DLETVGIPFGDDH  152 (183)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~  152 (183)
                      .++.++.......                     +.++.+....    ...+..++||||++.+.  ..+.|+..+....
T Consensus        87 dv~eldaas~~gI---------------------d~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp  145 (535)
T PRK08451         87 DIIEMDAASNRGI---------------------DDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPP  145 (535)
T ss_pred             eEEEeccccccCH---------------------HHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcC
Confidence            0111111111111                     1111221111    12567799999998774  3556666666666


Q ss_pred             CCcEEEEEecCh
Q 035585          153 RGCKLLLTARDC  164 (183)
Q Consensus       153 ~~~~iiitsr~~  164 (183)
                      +.+.+|+++.+.
T Consensus       146 ~~t~FIL~ttd~  157 (535)
T PRK08451        146 SYVKFILATTDP  157 (535)
T ss_pred             CceEEEEEECCh
Confidence            678888888664

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=98.55  E-value=9.1e-07  Score=74.53  Aligned_cols=137  Identities=15%  Similarity=0.177  Sum_probs=77.2

Q ss_pred             hcCCCcccccchHHHHHHHHHHhccCC-ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHH
Q 035585           20 KSNKGYEAFKSRLSTLKSIQDALTDVN-VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEI   98 (183)
Q Consensus        20 ~~~~~~~~~~gR~~~l~~l~~~l~~~~-~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   98 (183)
                      ..|.....++|.+.....|.+++.+.+ .+.++++|++|+|||++|+.++..+.........   .|..    -..+..+
T Consensus        10 ~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~---pC~~----C~~C~~i   82 (559)
T PRK05563         10 WRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGE---PCNE----CEICKAI   82 (559)
T ss_pred             hCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC---CCCc----cHHHHHH
Confidence            356677788999999999999987543 4668889999999999999998876532110000   0000    0011111


Q ss_pred             HHHhCCCchh-----HHHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecC
Q 035585           99 AEKLGLEFSE-----EAESRRASRLYERLK----KEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARD  163 (183)
Q Consensus        99 ~~~l~~~~~~-----~~~~~~~~~~~~~~~----~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~  163 (183)
                      ..........     ....+.++.+.....    ..+..++||||++.+.  .++.|+..+......+.+|++|..
T Consensus        83 ~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~  158 (559)
T PRK05563         83 TNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTE  158 (559)
T ss_pred             hcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCC
Confidence            1100000000     001112222332221    3567899999999773  455665555555556666665543

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=98.55  E-value=8e-08  Score=78.09  Aligned_cols=131  Identities=23%  Similarity=0.192  Sum_probs=72.2

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhccc-ce--EEEEe-----cCCc----------------CHHHHHHHHHHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFD-QV--VFSEV-----SQTP----------------DIKKIHGEIAEK  101 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~-~~--~~~~~-----~~~~----------------~~~~~~~~i~~~  101 (183)
                      ..+-.+|+|++|+|||||++++.+..-..-+.. .+  .++..     ..+.                ...++...++..
T Consensus       105 ~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~g  184 (582)
T KOG0062|consen  105 RGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYDKILAG  184 (582)
T ss_pred             cccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHHHHHHh
Confidence            345688999999999999999998221110000 00  11100     0111                112223323333


Q ss_pred             hCCCch-------hH-HHHHHHHHHHHHHhcCCeEEEEEeCCCCcccccccCcCC--CCCCCCcEEEEEecChHHHhhcC
Q 035585          102 LGLEFS-------EE-AESRRASRLYERLKKEKMILVILDNIWKYLDLETVGIPF--GDDHRGCKLLLTARDCNVLLNMS  171 (183)
Q Consensus       102 l~~~~~-------~~-~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~~~~l~~~~--~~~~~~~~iiitsr~~~~~~~~~  171 (183)
                      ++-...       .. ..+.+...+...+. .++=||+|||..++.++..+.+.-  ....+ ..+||+|||+.++..+.
T Consensus       185 lGFt~emq~~pt~slSGGWrMrlaLARAlf-~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~-~T~liVSHDr~FLn~V~  262 (582)
T KOG0062|consen  185 LGFTPEMQLQPTKSLSGGWRMRLALARALF-AKPDLLLLDEPTNHLDVVAVAWLENYLQTWK-ITSLIVSHDRNFLNTVC  262 (582)
T ss_pred             CCCCHHHHhccccccCcchhhHHHHHHHHh-cCCCEEeecCCcccchhHHHHHHHHHHhhCC-ceEEEEeccHHHHHHHH
Confidence            332110       01 12233333444443 789999999999987754442221  12223 57999999999999888


Q ss_pred             CCCcchh
Q 035585          172 LCRSEEE  178 (183)
Q Consensus       172 ~~~~~~~  178 (183)
                      +..++-+
T Consensus       263 tdIIH~~  269 (582)
T KOG0062|consen  263 TDIIHLE  269 (582)
T ss_pred             HHHHHHh
Confidence            7666544

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=98.54  E-value=3.6e-07  Score=79.13  Aligned_cols=101  Identities=19%  Similarity=0.343  Sum_probs=64.5

Q ss_pred             ccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhc----ccceEEEEecCCcCHHHHHHHHHHH
Q 035585           26 EAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKL----FDQVVFSEVSQTPDIKKIHGEIAEK  101 (183)
Q Consensus        26 ~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~  101 (183)
                      ..++||++++..+...|.......++|+|++|+|||++++.++........    ....+| ...    .    ..+.. 
T Consensus       186 ~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~-~l~----~----~~lla-  255 (758)
T PRK11034        186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIY-SLD----I----GSLLA-  255 (758)
T ss_pred             CcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEE-ecc----H----HHHhc-
Confidence            468999999999999998766678899999999999999999887644321    122233 111    1    11110 


Q ss_pred             hCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585          102 LGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY  138 (183)
Q Consensus       102 l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~  138 (183)
                       +....+ .....+..++..+...++.+|+|||++..
T Consensus       256 -G~~~~G-e~e~rl~~l~~~l~~~~~~ILfIDEIh~L  290 (758)
T PRK11034        256 -GTKYRG-DFEKRFKALLKQLEQDTNSILFIDEIHTI  290 (758)
T ss_pred             -ccchhh-hHHHHHHHHHHHHHhcCCCEEEeccHHHH
Confidence             111111 22233445555555466789999999854

>PRK08727 hypothetical protein; Validated

Probab=98.54  E-value=4.4e-07  Score=68.32  Aligned_cols=59  Identities=15%  Similarity=0.238  Sum_probs=38.1

Q ss_pred             cccccchHH-HHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEe
Q 035585           25 YEAFKSRLS-TLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEV   85 (183)
Q Consensus        25 ~~~~~gR~~-~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~   85 (183)
                      ..+|++... .+..+.....+.....+.|+|++|+|||+|+..+++.....  ...+.|+.+
T Consensus        18 f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~   77 (233)
T PRK08727         18 FDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPL   77 (233)
T ss_pred             hhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeH
Confidence            344544333 33333333334444679999999999999999999887665  234566553

>TIGR00602 rad24 checkpoint protein rad24

Probab=98.54  E-value=4.6e-07  Score=76.85  Aligned_cols=60  Identities=15%  Similarity=0.153  Sum_probs=49.4

Q ss_pred             chhhhhhcCCCcccccchHHHHHHHHHHhcc-----CCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           14 AEEVWLKSNKGYEAFKSRLSTLKSIQDALTD-----VNVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        14 ~~~~~~~~~~~~~~~~gR~~~l~~l~~~l~~-----~~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      .++.....|.....+++.+..++.+..++..     ...++++|+|++|+||||+++.++..+..
T Consensus        72 ~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~  136 (637)
T TIGR00602        72 EPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGI  136 (637)
T ss_pred             CchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            4466667888889999999999999988863     23456999999999999999999987654

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK10536 hypothetical protein; Provisional

Probab=98.54  E-value=9.4e-07  Score=66.86  Aligned_cols=137  Identities=11%  Similarity=0.104  Sum_probs=74.7

Q ss_pred             CCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHh-hhhcccceEEEEecC-----------C--
Q 035585           23 KGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQAS-EEKLFDQVVFSEVSQ-----------T--   88 (183)
Q Consensus        23 ~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~-~~~~~~~~~~~~~~~-----------~--   88 (183)
                      .+...+.+|...+..+..++.+  ..++.++|+.|+|||+|+..+..+.- .. .+..++..+..-           +  
T Consensus        52 ~~~~~i~p~n~~Q~~~l~al~~--~~lV~i~G~aGTGKT~La~a~a~~~l~~~-~~~kIiI~RP~v~~ge~LGfLPG~~~  128 (262)
T PRK10536         52 RDTSPILARNEAQAHYLKAIES--KQLIFATGEAGCGKTWISAAKAAEALIHK-DVDRIIVTRPVLQADEDLGFLPGDIA  128 (262)
T ss_pred             cCCccccCCCHHHHHHHHHHhc--CCeEEEECCCCCCHHHHHHHHHHHHHhcC-CeeEEEEeCCCCCchhhhCcCCCCHH
Confidence            3345567788899888888865  35999999999999999999887532 22 233333321110           0  


Q ss_pred             cCHHHHHHHHHHHhCCCchhHHHHHHHH--------HHHHHHhcCCe---EEEEEeCCCCcccccccCcCCCCCCCCcEE
Q 035585           89 PDIKKIHGEIAEKLGLEFSEEAESRRAS--------RLYERLKKEKM---ILVILDNIWKYLDLETVGIPFGDDHRGCKL  157 (183)
Q Consensus        89 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~---~llvlD~~~~~~~~~~l~~~~~~~~~~~~i  157 (183)
                      ....-.+.-+.+.+..-...........        .-..+++ +..   -+||+||++++.. ..+...+.....+|++
T Consensus       129 eK~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymR-Grtl~~~~vIvDEaqn~~~-~~~k~~ltR~g~~sk~  206 (262)
T PRK10536        129 EKFAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMR-GRTFENAVVILDEAQNVTA-AQMKMFLTRLGENVTV  206 (262)
T ss_pred             HHHHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhc-CCcccCCEEEEechhcCCH-HHHHHHHhhcCCCCEE
Confidence            0112223333333321111111000000        0122333 333   4999999998753 3333344455678998


Q ss_pred             EEEecCh
Q 035585          158 LLTARDC  164 (183)
Q Consensus       158 iitsr~~  164 (183)
                      |++--..
T Consensus       207 v~~GD~~  213 (262)
T PRK10536        207 IVNGDIT  213 (262)
T ss_pred             EEeCChh
Confidence            8876543

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=4.6e-07  Score=74.22  Aligned_cols=97  Identities=22%  Similarity=0.243  Sum_probs=66.0

Q ss_pred             CCCcccccchHHHHHHHHHHhccC---------CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHH
Q 035585           22 NKGYEAFKSRLSTLKSIQDALTDV---------NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIK   92 (183)
Q Consensus        22 ~~~~~~~~gR~~~l~~l~~~l~~~---------~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (183)
                      -.+..++..-++|++.+.++|.++         =+.-|+++||||+|||.||++++.+....       |+.++.. .+.
T Consensus       303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP-------FF~~sGS-EFd  374 (752)
T KOG0734|consen  303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP-------FFYASGS-EFD  374 (752)
T ss_pred             cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC-------eEecccc-chh
Confidence            356667777889999999998742         23459999999999999999998865433       2223221 222


Q ss_pred             HHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585           93 KIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY  138 (183)
Q Consensus        93 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~  138 (183)
                      +++-        .    .....++.++...+.+-+.+|+|||+|..
T Consensus       375 Em~V--------G----vGArRVRdLF~aAk~~APcIIFIDEiDav  408 (752)
T KOG0734|consen  375 EMFV--------G----VGARRVRDLFAAAKARAPCIIFIDEIDAV  408 (752)
T ss_pred             hhhh--------c----ccHHHHHHHHHHHHhcCCeEEEEechhhh
Confidence            2111        1    12234566777777789999999999854

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=98.51  E-value=5e-07  Score=63.45  Aligned_cols=38  Identities=29%  Similarity=0.441  Sum_probs=30.3

Q ss_pred             EEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCc
Q 035585           50 VGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTP   89 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (183)
                      ++|+|++|+|||+++..++......  ...++|+......
T Consensus         2 ~~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~e~~~   39 (165)
T cd01120           2 ILVFGPTGSGKTTLALQLALNIATK--GGKVVYVDIEEEI   39 (165)
T ss_pred             eeEeCCCCCCHHHHHHHHHHHHHhc--CCEEEEEECCcch
Confidence            6899999999999999999887653  4457787776543

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=98.51  E-value=4.5e-07  Score=65.40  Aligned_cols=115  Identities=16%  Similarity=0.138  Sum_probs=60.1

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEE-----------------ecCCcCHHHHHHHHHHHhCCCchh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSE-----------------VSQTPDIKKIHGEIAEKLGLEFSE  108 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~i~~~l~~~~~~  108 (183)
                      +...++|.|++|+|||||++.+.......   .+.++++                 +++......  ..+.+.+   ...
T Consensus        27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~--~tv~~~i---~~~   98 (178)
T cd03247          27 QGEKIALLGRSGSGKSTLLQLLTGDLKPQ---QGEITLDGVPVSDLEKALSSLISVLNQRPYLFD--TTLRNNL---GRR   98 (178)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCEEHHHHHHHHHhhEEEEccCCeeec--ccHHHhh---ccc
Confidence            44789999999999999999998765432   1111211                 111111100  0111111   011


Q ss_pred             HHHHHHHH-HHHHHHhcCCeEEEEEeCCCCccccc---ccCcCCCCCCCCcEEEEEecChHHHhh
Q 035585          109 EAESRRAS-RLYERLKKEKMILVILDNIWKYLDLE---TVGIPFGDDHRGCKLLLTARDCNVLLN  169 (183)
Q Consensus       109 ~~~~~~~~-~~~~~~~~~~~~llvlD~~~~~~~~~---~l~~~~~~~~~~~~iiitsr~~~~~~~  169 (183)
                      .+..+... .+...+. .++-++++||.....+..   .+...+.....+..+|++||+...+..
T Consensus        99 LS~G~~qrv~laral~-~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~  162 (178)
T cd03247          99 FSGGERQRLALARILL-QDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH  162 (178)
T ss_pred             CCHHHHHHHHHHHHHh-cCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh
Confidence            11122222 2223333 788999999987554321   111222111236679999999988763

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=98.50  E-value=3.8e-07  Score=65.56  Aligned_cols=50  Identities=14%  Similarity=0.126  Sum_probs=35.1

Q ss_pred             CCeEEEEEeCCC----CcccccccCcCCCCCCCCcEEEEEecChHHHhhcCCCC
Q 035585          125 EKMILVILDNIW----KYLDLETVGIPFGDDHRGCKLLLTARDCNVLLNMSLCR  174 (183)
Q Consensus       125 ~~~~llvlD~~~----~~~~~~~l~~~~~~~~~~~~iiitsr~~~~~~~~~~~~  174 (183)
                      +++-+|+-||..    ...+|+-+...-.-+..|+.|+++|||.+++..+.-..
T Consensus       154 ~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rv  207 (223)
T COG2884         154 NQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRV  207 (223)
T ss_pred             cCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcE
Confidence            889999999864    33344444222234566999999999999998775443

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.50  E-value=1.4e-06  Score=74.13  Aligned_cols=57  Identities=18%  Similarity=0.268  Sum_probs=46.8

Q ss_pred             hhhhhcCCCcccccchHHHHHHHHHHhccCCc-cEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           16 EVWLKSNKGYEAFKSRLSTLKSIQDALTDVNV-NIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        16 ~~~~~~~~~~~~~~gR~~~l~~l~~~l~~~~~-~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ......|.....++|.+...+.|.+++.+.+. +.++++|+.|+||||+|+.+...+.
T Consensus         7 ~~~kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~   64 (614)
T PRK14971          7 SARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTIN   64 (614)
T ss_pred             HHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence            44455667778899999999999999886554 5589999999999999999888764

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=98.50  E-value=3.4e-07  Score=65.64  Aligned_cols=113  Identities=20%  Similarity=0.234  Sum_probs=60.5

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEe------------------cCCcCHHHHHHHHHHHhCCCc
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEV------------------SQTPDIKKIHGEIAEKLGLEF  106 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~i~~~l~~~~  106 (183)
                      .+...++|.|++|+|||||++.++......   .+.++++-                  .+......  ..+.+.+    
T Consensus        26 ~~G~~~~l~G~nGsGKstLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~--~t~~e~l----   96 (171)
T cd03228          26 KPGEKVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS--GTIRENI----   96 (171)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc--chHHHHh----
Confidence            345789999999999999999998876432   22222211                  11110000  0111111    


Q ss_pred             hhHHHHHHH-HHHHHHHhcCCeEEEEEeCCCCccc---ccccCcCCCCCCCCcEEEEEecChHHHhh
Q 035585          107 SEEAESRRA-SRLYERLKKEKMILVILDNIWKYLD---LETVGIPFGDDHRGCKLLLTARDCNVLLN  169 (183)
Q Consensus       107 ~~~~~~~~~-~~~~~~~~~~~~~llvlD~~~~~~~---~~~l~~~~~~~~~~~~iiitsr~~~~~~~  169 (183)
                        .+..+.. -.+...+. .++-++++||.....+   ...+...+.....+..+|++||+.+.+..
T Consensus        97 --LS~G~~~rl~la~al~-~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~  160 (171)
T cd03228          97 --LSGGQRQRIAIARALL-RDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD  160 (171)
T ss_pred             --hCHHHHHHHHHHHHHh-cCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence              1111111 12223333 6788999999875533   22222222222235679999999988765

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.50  E-value=1.9e-07  Score=66.44  Aligned_cols=121  Identities=13%  Similarity=0.134  Sum_probs=64.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCc--CHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTP--DIKKIHGEIAEKLGLEFSEEAESRRASRLYERLK  123 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~  123 (183)
                      +...++|.|++|+|||||++.+......   ..+.++++-....  .....   ....++. .+.-+..+.....+....
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~v~~~g~~~~~~~~~~~---~~~~i~~-~~qLS~G~~qrl~laral   97 (163)
T cd03216          25 RGEVHALLGENGAGKSTLMKILSGLYKP---DSGEILVDGKEVSFASPRDA---RRAGIAM-VYQLSVGERQMVEIARAL   97 (163)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEECCcCCHHHH---HhcCeEE-EEecCHHHHHHHHHHHHH
Confidence            4578999999999999999999877653   2333333221111  11111   1111111 111222222222222222


Q ss_pred             cCCeEEEEEeCCCCcccc---cccCcCCCC-CCCCcEEEEEecChHHHhhcCCC
Q 035585          124 KEKMILVILDNIWKYLDL---ETVGIPFGD-DHRGCKLLLTARDCNVLLNMSLC  173 (183)
Q Consensus       124 ~~~~~llvlD~~~~~~~~---~~l~~~~~~-~~~~~~iiitsr~~~~~~~~~~~  173 (183)
                      ..++-++++||.....+.   ..+...+.. ...+..+|++||+...+......
T Consensus        98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~  151 (163)
T cd03216          98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADR  151 (163)
T ss_pred             hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCE
Confidence            378899999998755432   122122211 12366799999999876655443

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=98.49  E-value=2.9e-07  Score=75.33  Aligned_cols=125  Identities=20%  Similarity=0.241  Sum_probs=78.6

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhc----ccceEEE---------------------EecCCcCHHHHHHHHHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKL----FDQVVFS---------------------EVSQTPDIKKIHGEIAE  100 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~----~~~~~~~---------------------~~~~~~~~~~~~~~i~~  100 (183)
                      .-..++++||+|+|||||.+.++..+....-    -.+..+.                     ..-.+....+.++.++.
T Consensus       415 ~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilg  494 (614)
T KOG0927|consen  415 LDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILG  494 (614)
T ss_pred             cccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHH
Confidence            3357899999999999999998866543210    0011111                     01111234556677777


Q ss_pred             HhCCCchh-------HHHHHHHHHHHHHHhcCCeEEEEEeCCCCcccccccC--cCCCCCCCCcEEEEEecChHHHhhcC
Q 035585          101 KLGLEFSE-------EAESRRASRLYERLKKEKMILVILDNIWKYLDLETVG--IPFGDDHRGCKLLLTARDCNVLLNMS  171 (183)
Q Consensus       101 ~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~~~~l~--~~~~~~~~~~~iiitsr~~~~~~~~~  171 (183)
                      +++.....       .+......-++..+.-.++.+|||||..++.+.+.+.  ....+..+|. +|++|||..++..+.
T Consensus       495 rfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~Gg-vv~vSHDfrlI~qVa  573 (614)
T KOG0927|consen  495 RFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFPGG-VVLVSHDFRLISQVA  573 (614)
T ss_pred             HhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccCCc-eeeeechhhHHHHHH
Confidence            77655322       2333334455566666899999999999887765552  2333555675 899999999887553

>CHL00181 cbbX CbbX; Provisional

Probab=98.49  E-value=1.8e-06  Score=66.97  Aligned_cols=26  Identities=27%  Similarity=0.262  Sum_probs=22.8

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      ..++++|++|+|||++|+.++..+..
T Consensus        60 ~~ill~G~pGtGKT~lAr~la~~~~~   85 (287)
T CHL00181         60 LHMSFTGSPGTGKTTVALKMADILYK   85 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHH
Confidence            45899999999999999999887654

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=98.48  E-value=7.4e-07  Score=64.00  Aligned_cols=115  Identities=19%  Similarity=0.201  Sum_probs=62.0

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEE-----------------ecCCcCH---HHHHHHHHHHhCCC
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSE-----------------VSQTPDI---KKIHGEIAEKLGLE  105 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~---~~~~~~i~~~l~~~  105 (183)
                      +...++|.|++|+|||||++.+.......   .+.++++                 +++....   ..+...+.      
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~------   95 (173)
T cd03230          25 KGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK------   95 (173)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhh------
Confidence            45789999999999999999998765431   1222221                 1111100   01111111      


Q ss_pred             chhHHHHHHHH-HHHHHHhcCCeEEEEEeCCCCcccc---cccCcCCCC-CCCCcEEEEEecChHHHhhcCCC
Q 035585          106 FSEEAESRRAS-RLYERLKKEKMILVILDNIWKYLDL---ETVGIPFGD-DHRGCKLLLTARDCNVLLNMSLC  173 (183)
Q Consensus       106 ~~~~~~~~~~~-~~~~~~~~~~~~llvlD~~~~~~~~---~~l~~~~~~-~~~~~~iiitsr~~~~~~~~~~~  173 (183)
                         -+..+... .+...+. .++-++++||.....+.   ..+...+.. ...|..+|++||+...+......
T Consensus        96 ---LS~G~~qrv~laral~-~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~  164 (173)
T cd03230          96 ---LSGGMKQRLALAQALL-HDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDR  164 (173)
T ss_pred             ---cCHHHHHHHHHHHHHH-cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCE
Confidence               11122222 2223333 78999999998755432   122122211 12367799999999887755443

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.47  E-value=4.4e-07  Score=68.66  Aligned_cols=124  Identities=20%  Similarity=0.205  Sum_probs=73.2

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC-----CcCHHHHHHHHHHHhCCCchh-------HHHHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ-----TPDIKKIHGEIAEKLGLEFSE-------EAESR  113 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~~l~~~~~~-------~~~~~  113 (183)
                      +..+++|+|++|+||||+++.+....+..  .+.+.| .-..     .....+-...+++..+.....       .+...
T Consensus        38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt--~G~i~f-~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ  114 (268)
T COG4608          38 EGETLGLVGESGCGKSTLGRLILGLEEPT--SGEILF-EGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ  114 (268)
T ss_pred             CCCEEEEEecCCCCHHHHHHHHHcCcCCC--CceEEE-cCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence            45789999999999999999999887753  223333 2211     122334445556555532111       11111


Q ss_pred             HHHHHHHHHhcCCeEEEEEeCCCCcccc---cccCcCCC--CCCCCcEEEEEecChHHHhhcCC
Q 035585          114 RASRLYERLKKEKMILVILDNIWKYLDL---ETVGIPFG--DDHRGCKLLLTARDCNVLLNMSL  172 (183)
Q Consensus       114 ~~~~~~~~~~~~~~~llvlD~~~~~~~~---~~l~~~~~--~~~~~~~iiitsr~~~~~~~~~~  172 (183)
                      ..+-.+.+...-++-++|.||.-+..+.   ..++..+.  ....|...+..|||..++..+..
T Consensus       115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd  178 (268)
T COG4608         115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD  178 (268)
T ss_pred             hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence            1122233333478999999998776543   22222222  22336679999999999886655

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=7.2e-07  Score=75.25  Aligned_cols=50  Identities=22%  Similarity=0.256  Sum_probs=42.9

Q ss_pred             cccccchHHHHHHHHHHhc------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           25 YEAFKSRLSTLKSIQDALT------DVNVNIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        25 ~~~~~gR~~~l~~l~~~l~------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      ..+++|-++.-+++.++|.      ....++++++||||+|||+|++.++..+..+
T Consensus       322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk  377 (782)
T COG0466         322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRK  377 (782)
T ss_pred             cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCC
Confidence            4567888888899998876      4566899999999999999999999988765

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=98.46  E-value=1.5e-06  Score=66.64  Aligned_cols=118  Identities=18%  Similarity=0.126  Sum_probs=65.2

Q ss_pred             cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEE---ecCCcCHHHHHHHHHHHhCCCc--h---hHHHHHHH
Q 035585           44 DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSE---VSQTPDIKKIHGEIAEKLGLEF--S---EEAESRRA  115 (183)
Q Consensus        44 ~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~l~~~~--~---~~~~~~~~  115 (183)
                      +.....++|.|++|+|||||++.++..+...   .+.++++   +.......++...+ ..+....  .   -.......
T Consensus       108 ~~~~~~~~i~g~~g~GKttl~~~l~~~~~~~---~G~i~~~g~~v~~~d~~~ei~~~~-~~~~q~~~~~r~~v~~~~~k~  183 (270)
T TIGR02858       108 NNRVLNTLIISPPQCGKTTLLRDLARILSTG---ISQLGLRGKKVGIVDERSEIAGCV-NGVPQHDVGIRTDVLDGCPKA  183 (270)
T ss_pred             CCCeeEEEEEcCCCCCHHHHHHHHhCccCCC---CceEEECCEEeecchhHHHHHHHh-cccccccccccccccccchHH
Confidence            3445789999999999999999999887653   1222221   11111112222111 1110000  0   00001112


Q ss_pred             HHHHHHHhcCCeEEEEEeCCCCcccccccCcCCCCCCCCcEEEEEecChHHHh
Q 035585          116 SRLYERLKKEKMILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVLL  168 (183)
Q Consensus       116 ~~~~~~~~~~~~~llvlD~~~~~~~~~~l~~~~~~~~~~~~iiitsr~~~~~~  168 (183)
                      ..+...++...+-++++||+.....+..+...+.   .|..+|+|+|+..+..
T Consensus       184 ~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~  233 (270)
T TIGR02858       184 EGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVED  233 (270)
T ss_pred             HHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence            2333344446899999999976655555544432   4778999999887744

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=1.2e-06  Score=72.82  Aligned_cols=92  Identities=21%  Similarity=0.252  Sum_probs=62.8

Q ss_pred             ccccchHHHHHHHHHHhc------------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHH
Q 035585           26 EAFKSRLSTLKSIQDALT------------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKK   93 (183)
Q Consensus        26 ~~~~gR~~~l~~l~~~l~------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (183)
                      ..+=|-+..+..|.+++.            -.+++-|+++||+|+|||.||+.++.++...       |+.++..     
T Consensus       190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP-------f~~isAp-----  257 (802)
T KOG0733|consen  190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP-------FLSISAP-----  257 (802)
T ss_pred             hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc-------eEeecch-----
Confidence            344567788888877653            1466789999999999999999999987754       2222211     


Q ss_pred             HHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 035585           94 IHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWK  137 (183)
Q Consensus        94 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~  137 (183)
                         .+...+.     ...++.++.++......-+.+++|||+|-
T Consensus       258 ---eivSGvS-----GESEkkiRelF~~A~~~aPcivFiDeIDA  293 (802)
T KOG0733|consen  258 ---EIVSGVS-----GESEKKIRELFDQAKSNAPCIVFIDEIDA  293 (802)
T ss_pred             ---hhhcccC-----cccHHHHHHHHHHHhccCCeEEEeecccc
Confidence               1111111     12345567788777778999999999983

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.45  E-value=4.8e-07  Score=65.16  Aligned_cols=112  Identities=22%  Similarity=0.207  Sum_probs=59.5

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhccc---------ceEEEEecCCcCHHHHHHHHHHHhCCCch--h-----
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFD---------QVVFSEVSQTPDIKKIHGEIAEKLGLEFS--E-----  108 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~i~~~l~~~~~--~-----  108 (183)
                      .+...++|+|++|+|||||++.+...- ....+.         .+.|+  .+        ..+++.++....  .     
T Consensus        19 ~~G~~~~l~G~nG~GKSTLl~~il~~~-G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~   87 (176)
T cd03238          19 PLNVLVVVTGVSGSGKSTLVNEGLYAS-GKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLST   87 (176)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhhcC-CcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCc
Confidence            345789999999999999999885311 000000         12221  11        234555543211  1     


Q ss_pred             HHHHHH-HHHHHHHHhcCC--eEEEEEeCCCCccc---ccccCcCCCC-CCCCcEEEEEecChHHHh
Q 035585          109 EAESRR-ASRLYERLKKEK--MILVILDNIWKYLD---LETVGIPFGD-DHRGCKLLLTARDCNVLL  168 (183)
Q Consensus       109 ~~~~~~-~~~~~~~~~~~~--~~llvlD~~~~~~~---~~~l~~~~~~-~~~~~~iiitsr~~~~~~  168 (183)
                      .+.... ...+...+. .+  +-++++||.....+   ...+...+.. ...|..||++||+.+.+.
T Consensus        88 LSgGq~qrl~laral~-~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~  153 (176)
T cd03238          88 LSGGELQRVKLASELF-SEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS  153 (176)
T ss_pred             CCHHHHHHHHHHHHHh-hCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence            111222 222233333 56  88999999875533   2222222221 124677999999998765

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=98.45  E-value=2.1e-06  Score=69.48  Aligned_cols=98  Identities=18%  Similarity=0.223  Sum_probs=59.3

Q ss_pred             cCCCcccccchHHHHHHHHHHhc-------------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585           21 SNKGYEAFKSRLSTLKSIQDALT-------------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ   87 (183)
Q Consensus        21 ~~~~~~~~~gR~~~l~~l~~~l~-------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~   87 (183)
                      |.....++.|-+...+.+.+.+.             -..++.++|+|++|+|||++++.+++.....       ++.+..
T Consensus       140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~-------fi~i~~  212 (398)
T PTZ00454        140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAT-------FIRVVG  212 (398)
T ss_pred             CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC-------EEEEeh
Confidence            33444456777777777776543             1356789999999999999999999875432       111111


Q ss_pred             CcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585           88 TPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY  138 (183)
Q Consensus        88 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~  138 (183)
                          ..    +......     .....+..++.......+.+|+|||++..
T Consensus       213 ----s~----l~~k~~g-----e~~~~lr~lf~~A~~~~P~ILfIDEID~i  250 (398)
T PTZ00454        213 ----SE----FVQKYLG-----EGPRMVRDVFRLARENAPSIIFIDEVDSI  250 (398)
T ss_pred             ----HH----HHHHhcc-----hhHHHHHHHHHHHHhcCCeEEEEECHhhh
Confidence                11    1111111     11223445555555578899999998754

>CHL00176 ftsH cell division protein; Validated

Probab=98.44  E-value=1.2e-06  Score=74.64  Aligned_cols=72  Identities=25%  Similarity=0.263  Sum_probs=43.8

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCC
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEK  126 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~  126 (183)
                      +..++|+||+|+|||+||+.++......     .+.++++.      +.....   +      .....+..++.......
T Consensus       216 p~gVLL~GPpGTGKT~LAralA~e~~~p-----~i~is~s~------f~~~~~---g------~~~~~vr~lF~~A~~~~  275 (638)
T CHL00176        216 PKGVLLVGPPGTGKTLLAKAIAGEAEVP-----FFSISGSE------FVEMFV---G------VGAARVRDLFKKAKENS  275 (638)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCC-----eeeccHHH------HHHHhh---h------hhHHHHHHHHHHHhcCC
Confidence            4569999999999999999998765321     22222211      111110   0      01123344555555578


Q ss_pred             eEEEEEeCCCCc
Q 035585          127 MILVILDNIWKY  138 (183)
Q Consensus       127 ~~llvlD~~~~~  138 (183)
                      +.+|+|||+|..
T Consensus       276 P~ILfIDEID~l  287 (638)
T CHL00176        276 PCIVFIDEIDAV  287 (638)
T ss_pred             CcEEEEecchhh
Confidence            899999999754

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=98.44  E-value=2.7e-06  Score=71.64  Aligned_cols=139  Identities=10%  Similarity=0.186  Sum_probs=78.7

Q ss_pred             hhcCCCcccccchHHHHHHHHHHhccCCc-cEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHH
Q 035585           19 LKSNKGYEAFKSRLSTLKSIQDALTDVNV-NIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGE   97 (183)
Q Consensus        19 ~~~~~~~~~~~gR~~~l~~l~~~l~~~~~-~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (183)
                      ...|.....++|-+.....|.+++.+.+. +.++++|++|+||||+|+.++..+........  . .|......    ..
T Consensus         9 kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~--~-pC~~C~~C----~~   81 (563)
T PRK06647          9 KRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP--M-PCGECSSC----KS   81 (563)
T ss_pred             HhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC--C-CCccchHH----HH
Confidence            34566777889999999999999875444 56899999999999999999988754211000  0 00000000    11


Q ss_pred             HHHHhCC-----CchhHHHHHHHHHHHHHH----hcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecCh
Q 035585           98 IAEKLGL-----EFSEEAESRRASRLYERL----KKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDC  164 (183)
Q Consensus        98 i~~~l~~-----~~~~~~~~~~~~~~~~~~----~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~  164 (183)
                      +...-..     ........+.+..+...+    ...+..++||||++.+.  .++.++..+......+.+|+++.+.
T Consensus        82 i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~  159 (563)
T PRK06647         82 IDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEV  159 (563)
T ss_pred             HHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCCh
Confidence            1100000     000000011112222111    23577799999999774  3566666666656677777666543

>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=98.44  E-value=7.3e-07  Score=72.15  Aligned_cols=115  Identities=22%  Similarity=0.213  Sum_probs=71.7

Q ss_pred             chHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhH
Q 035585           30 SRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEE  109 (183)
Q Consensus        30 gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~  109 (183)
                      .|..-+..+...+...+. +++|+||.++||||+++.+.......     .+|++.........-..+.           
T Consensus        21 ~~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l~d~-----------   83 (398)
T COG1373          21 ERRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIELLDL-----------   83 (398)
T ss_pred             hHHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhHHHH-----------
Confidence            344556666666544433 99999999999999997666654432     4444443322111100111           


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEEeCCCCcccccccCcCCCCCCCCcEEEEEecChHHHh
Q 035585          110 AESRRASRLYERLKKEKMILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVLL  168 (183)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~~~~l~~~~~~~~~~~~iiitsr~~~~~~  168 (183)
                           ...+.. ....++..++|||++....|......+-+..+. .+++|+-+..+..
T Consensus        84 -----~~~~~~-~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~  135 (398)
T COG1373          84 -----LRAYIE-LKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLS  135 (398)
T ss_pred             -----HHHHHH-hhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhc
Confidence                 111111 111277899999999999988887777766666 7888887777655

>PRK08181 transposase; Validated

Probab=98.43  E-value=7.7e-07  Score=68.24  Aligned_cols=75  Identities=19%  Similarity=0.193  Sum_probs=46.2

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcC
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKE  125 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~  125 (183)
                      ....+.++|++|+|||.|+..+.+.....  ...++|+.+      .++...+......        ......+..+  .
T Consensus       105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~~------~~L~~~l~~a~~~--------~~~~~~l~~l--~  166 (269)
T PRK08181        105 KGANLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTRT------TDLVQKLQVARRE--------LQLESAIAKL--D  166 (269)
T ss_pred             cCceEEEEecCCCcHHHHHHHHHHHHHHc--CCceeeeeH------HHHHHHHHHHHhC--------CcHHHHHHHH--h
Confidence            34679999999999999999999887654  234556443      3333444322110        1112333344  3


Q ss_pred             CeEEEEEeCCCCc
Q 035585          126 KMILVILDNIWKY  138 (183)
Q Consensus       126 ~~~llvlD~~~~~  138 (183)
                      +.-+|||||+...
T Consensus       167 ~~dLLIIDDlg~~  179 (269)
T PRK08181        167 KFDLLILDDLAYV  179 (269)
T ss_pred             cCCEEEEeccccc
Confidence            5569999998643

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.43  E-value=2.2e-06  Score=62.85  Aligned_cols=57  Identities=21%  Similarity=0.264  Sum_probs=41.2

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC-cCHHHHHHHHHHHhCCC
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT-PDIKKIHGEIAEKLGLE  105 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~l~~~  105 (183)
                      +.+++++|++|+||||.+..++.++..+  ...+..+++... ....+.++..++.++.+
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp   58 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVP   58 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccc
Confidence            4689999999999999999999888765  445666666544 34455666777777654

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK07399 DNA polymerase III subunit delta'; Validated

Probab=98.42  E-value=2.4e-06  Score=67.05  Aligned_cols=48  Identities=10%  Similarity=0.104  Sum_probs=41.4

Q ss_pred             ccccchHHHHHHHHHHhccCC-ccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           26 EAFKSRLSTLKSIQDALTDVN-VNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        26 ~~~~gR~~~l~~l~~~l~~~~-~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      ..++|.+...+.+...+.+++ ++.++++|+.|+||+++|..++..+-.
T Consensus         4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc   52 (314)
T PRK07399          4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLS   52 (314)
T ss_pred             HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence            467899999999999888665 489999999999999999999887743

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]

Probab=98.42  E-value=2.5e-07  Score=76.25  Aligned_cols=138  Identities=14%  Similarity=0.208  Sum_probs=86.1

Q ss_pred             hcCCCcccccchHHHHHHHHHHhccCC-ccEEEEEeCCCCcHHHHHHHHHhHHhhhh--cccceEEE--E--ecCCcCHH
Q 035585           20 KSNKGYEAFKSRLSTLKSIQDALTDVN-VNIVGVYGMGGIGKTTLVKEFARQASEEK--LFDQVVFS--E--VSQTPDIK   92 (183)
Q Consensus        20 ~~~~~~~~~~gR~~~l~~l~~~l~~~~-~~~v~i~G~~G~GKTtL~~~~~~~~~~~~--~~~~~~~~--~--~~~~~~~~   92 (183)
                      ..|.....++|-+-....|.+.+..++ .+..+..|+.|+||||+|+.++..+-...  ....+--+  |  +..+...+
T Consensus        10 yRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~D   89 (515)
T COG2812          10 YRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLID   89 (515)
T ss_pred             hCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCccc
Confidence            445666778999999999999998543 35688999999999999999998775431  11111110  0  00000000


Q ss_pred             HHHHHHHHHhCCCchhHHHHHHHHHHHHHHh----cCCeEEEEEeCCCCc--ccccccCcCCCCCCCCcEEEEEecChH
Q 035585           93 KIHGEIAEKLGLEFSEEAESRRASRLYERLK----KEKMILVILDNIWKY--LDLETVGIPFGDDHRGCKLLLTARDCN  165 (183)
Q Consensus        93 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~llvlD~~~~~--~~~~~l~~~~~~~~~~~~iiitsr~~~  165 (183)
                      -+...-++        ....+.++.+.+...    ..+--+.||||+|-+  ..++.|+..+-....+..+|+.|.+..
T Consensus        90 viEiDaAS--------n~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~  160 (515)
T COG2812          90 VIEIDAAS--------NTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQ  160 (515)
T ss_pred             chhhhhhh--------ccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcC
Confidence            00001111        111223444444442    366779999999855  468888888877778888888887765

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=98.41  E-value=2e-06  Score=63.20  Aligned_cols=110  Identities=18%  Similarity=0.253  Sum_probs=58.0

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHhhhhcccc------------eEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQASEEKLFDQ------------VVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRA  115 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~  115 (183)
                      ++++|+|++|+|||||++.+.....-. ..+.            .++......       .++...  ... ...+....
T Consensus        26 ~~~~ltGpNg~GKSTllr~i~~~~~l~-~~G~~v~a~~~~~q~~~l~~~~~~~-------d~l~~~--~s~-~~~e~~~~   94 (199)
T cd03283          26 NGILITGSNMSGKSTFLRTIGVNVILA-QAGAPVCASSFELPPVKIFTSIRVS-------DDLRDG--ISY-FYAELRRL   94 (199)
T ss_pred             cEEEEECCCCCChHHHHHHHHHHHHHH-HcCCEEecCccCcccceEEEeccch-------hccccc--cCh-HHHHHHHH
Confidence            799999999999999999997644211 0110            011111111       111100  000 01111223


Q ss_pred             HHHHHHHhcCCeEEEEEeCCCCccc------c-cccCcCCCCCCCCcEEEEEecChHHHhhc
Q 035585          116 SRLYERLKKEKMILVILDNIWKYLD------L-ETVGIPFGDDHRGCKLLLTARDCNVLLNM  170 (183)
Q Consensus       116 ~~~~~~~~~~~~~llvlD~~~~~~~------~-~~l~~~~~~~~~~~~iiitsr~~~~~~~~  170 (183)
                      ..+++.+...++-++++||.-...+      + ..+...+.  ..+..+|++||+.+++...
T Consensus        95 ~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~--~~~~tiiivTH~~~~~~~~  154 (199)
T cd03283          95 KEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLK--NKNTIGIISTHDLELADLL  154 (199)
T ss_pred             HHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHH--HCCCEEEEEcCcHHHHHhh
Confidence            3444444224899999999754322      1 11112222  2367899999999887654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=98.41  E-value=1.7e-06  Score=64.46  Aligned_cols=51  Identities=22%  Similarity=0.172  Sum_probs=33.8

Q ss_pred             cCCeEEEEEeCCCCcccc---cccCcCCC--CCCCCcEEEEEecChHHHhhcCCCC
Q 035585          124 KEKMILVILDNIWKYLDL---ETVGIPFG--DDHRGCKLLLTARDCNVLLNMSLCR  174 (183)
Q Consensus       124 ~~~~~llvlD~~~~~~~~---~~l~~~~~--~~~~~~~iiitsr~~~~~~~~~~~~  174 (183)
                      ..++-+||+||+-+..+.   ..+...+.  ....+..+++.|||-.++..++...
T Consensus       157 ~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi  212 (252)
T COG1124         157 IPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRI  212 (252)
T ss_pred             ccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhhe
Confidence            378899999998765431   11112221  2334667999999999999777654

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=98.41  E-value=1.3e-06  Score=60.89  Aligned_cols=107  Identities=22%  Similarity=0.291  Sum_probs=59.0

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHH-HHHHHHHHHhc
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESR-RASRLYERLKK  124 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~-~~~~~~~~~~~  124 (183)
                      ....++|.|++|+|||||++.+.......   .+.++++-...             +.. .+..+..+ ....+...+. 
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~~~~~-------------i~~-~~~lS~G~~~rv~laral~-   86 (144)
T cd03221          25 PGDRIGLVGRNGAGKSTLLKLIAGELEPD---EGIVTWGSTVK-------------IGY-FEQLSGGEKMRLALAKLLL-   86 (144)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCeEE-------------EEE-EccCCHHHHHHHHHHHHHh-
Confidence            45789999999999999999998876532   22233221000             000 00011111 1122333333 


Q ss_pred             CCeEEEEEeCCCCccc---ccccCcCCCCCCCCcEEEEEecChHHHhhcCC
Q 035585          125 EKMILVILDNIWKYLD---LETVGIPFGDDHRGCKLLLTARDCNVLLNMSL  172 (183)
Q Consensus       125 ~~~~llvlD~~~~~~~---~~~l~~~~~~~~~~~~iiitsr~~~~~~~~~~  172 (183)
                      .++-++++||.....+   ...+...+...  +..++++||+.+.+.....
T Consensus        87 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d  135 (144)
T cd03221          87 ENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVAT  135 (144)
T ss_pred             cCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCC
Confidence            6788999999875433   22221222111  2469999999887765543

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=98.41  E-value=7.9e-07  Score=78.40  Aligned_cols=132  Identities=18%  Similarity=0.245  Sum_probs=73.3

Q ss_pred             cccccchHHHHHHHHHHhccC---------CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHH
Q 035585           25 YEAFKSRLSTLKSIQDALTDV---------NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIH   95 (183)
Q Consensus        25 ~~~~~gR~~~l~~l~~~l~~~---------~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (183)
                      ...++|....++.+...+...         +...++++||+|+|||++|+.++..+...  ....+.++++.-..... .
T Consensus       564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~--~~~~i~~d~s~~~~~~~-~  640 (852)
T TIGR03346       564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD--EDAMVRIDMSEYMEKHS-V  640 (852)
T ss_pred             hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC--CCcEEEEechhhcccch-H
Confidence            345788888888888877521         23568899999999999999999887543  23455566654322111 1


Q ss_pred             HHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--cccccCcCCCC-----------CCCCcEEEEEec
Q 035585           96 GEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKYL--DLETVGIPFGD-----------DHRGCKLLLTAR  162 (183)
Q Consensus        96 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~--~~~~l~~~~~~-----------~~~~~~iiitsr  162 (183)
                      ..+   ++. .++-........+...++.....+|+|||++.+.  .+..++..+..           ....+.||+||.
T Consensus       641 ~~l---~g~-~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn  716 (852)
T TIGR03346       641 ARL---IGA-PPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSN  716 (852)
T ss_pred             HHh---cCC-CCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCC
Confidence            111   111 1110000011123333443445699999998662  23333332211           134566777776


Q ss_pred             C
Q 035585          163 D  163 (183)
Q Consensus       163 ~  163 (183)
                      -
T Consensus       717 ~  717 (852)
T TIGR03346       717 L  717 (852)
T ss_pred             c
Confidence            5

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=98.41  E-value=7.8e-07  Score=63.87  Aligned_cols=113  Identities=19%  Similarity=0.202  Sum_probs=59.6

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC--cCHHHHHH--------------HHHHHhCCCchhH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT--PDIKKIHG--------------EIAEKLGLEFSEE  109 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--------------~i~~~l~~~~~~~  109 (183)
                      +...++|.|++|+|||||++.++......   .+.++++-...  ........              .+.+.+      .
T Consensus        27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~l------L   97 (173)
T cd03246          27 PGESLAIIGPSGSGKSTLARLILGLLRPT---SGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI------L   97 (173)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHC------c
Confidence            45789999999999999999998765432   12222111000  00011000              111111      1


Q ss_pred             HHHHHHH-HHHHHHhcCCeEEEEEeCCCCcccc---cccCcCCCC-CCCCcEEEEEecChHHHh
Q 035585          110 AESRRAS-RLYERLKKEKMILVILDNIWKYLDL---ETVGIPFGD-DHRGCKLLLTARDCNVLL  168 (183)
Q Consensus       110 ~~~~~~~-~~~~~~~~~~~~llvlD~~~~~~~~---~~l~~~~~~-~~~~~~iiitsr~~~~~~  168 (183)
                      +..+... .+...+. .++-++++||.....+.   ..+...+.. ...+..+|++||+.+.+.
T Consensus        98 S~G~~qrv~la~al~-~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~  160 (173)
T cd03246          98 SGGQRQRLGLARALY-GNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA  160 (173)
T ss_pred             CHHHHHHHHHHHHHh-cCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence            1122222 2233333 77889999998755432   122122211 123677999999998775

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=98.40  E-value=3.2e-06  Score=65.51  Aligned_cols=27  Identities=26%  Similarity=0.231  Sum_probs=23.3

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      ..++++|++|+|||++|+.++..+...
T Consensus        59 ~~vll~G~pGTGKT~lA~~ia~~l~~~   85 (284)
T TIGR02880        59 LHMSFTGNPGTGKTTVALRMAQILHRL   85 (284)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence            368999999999999999998877654

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.40  E-value=2.3e-06  Score=71.20  Aligned_cols=104  Identities=17%  Similarity=0.277  Sum_probs=68.3

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhc
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKK  124 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~  124 (183)
                      ..+.-|++|||+|+|||.||++++++-...       |+.+-..    +++....         ...+..+++++.+.+.
T Consensus       543 ~~PsGvLL~GPPGCGKTLlAKAVANEag~N-------FisVKGP----ELlNkYV---------GESErAVR~vFqRAR~  602 (802)
T KOG0733|consen  543 DAPSGVLLCGPPGCGKTLLAKAVANEAGAN-------FISVKGP----ELLNKYV---------GESERAVRQVFQRARA  602 (802)
T ss_pred             CCCCceEEeCCCCccHHHHHHHHhhhccCc-------eEeecCH----HHHHHHh---------hhHHHHHHHHHHHhhc
Confidence            345679999999999999999999987665       2333221    1222221         1234567888888888


Q ss_pred             CCeEEEEEeCCCCcc-------------cccccCcCCC--CCCCCcEEEEEecChHHHh
Q 035585          125 EKMILVILDNIWKYL-------------DLETVGIPFG--DDHRGCKLLLTARDCNVLL  168 (183)
Q Consensus       125 ~~~~llvlD~~~~~~-------------~~~~l~~~~~--~~~~~~~iiitsr~~~~~~  168 (183)
                      ..+.+|+|||+|.+.             -+++|+..++  ....|..||-.|....++.
T Consensus       603 saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiID  661 (802)
T KOG0733|consen  603 SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIID  661 (802)
T ss_pred             CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccc
Confidence            899999999998552             1344444443  2445766777666666554

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=98.39  E-value=9.2e-07  Score=65.96  Aligned_cols=101  Identities=27%  Similarity=0.339  Sum_probs=57.7

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCC
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEK  126 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~  126 (183)
                      ...+.|+|++|+|||.|++++++.......-..++|+++.      ++...+.+.+...        ....+.+.+  ..
T Consensus        34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~------~f~~~~~~~~~~~--------~~~~~~~~~--~~   97 (219)
T PF00308_consen   34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAE------EFIREFADALRDG--------EIEEFKDRL--RS   97 (219)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHH------HHHHHHHHHHHTT--------SHHHHHHHH--CT
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHH------HHHHHHHHHHHcc--------cchhhhhhh--hc
Confidence            3468999999999999999999988765233346675443      3444444333221        112333444  45


Q ss_pred             eEEEEEeCCCCcccc----cccCcCCCC-CCCCcEEEEEecC
Q 035585          127 MILVILDNIWKYLDL----ETVGIPFGD-DHRGCKLLLTARD  163 (183)
Q Consensus       127 ~~llvlD~~~~~~~~----~~l~~~~~~-~~~~~~iiitsr~  163 (183)
                      --+|+|||++....-    +.+...++. ...|..+|+|+..
T Consensus        98 ~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~  139 (219)
T PF00308_consen   98 ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDR  139 (219)
T ss_dssp             SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCC
Confidence            678888888765321    122222221 1235568888753

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=98.39  E-value=2.6e-06  Score=64.03  Aligned_cols=36  Identities=28%  Similarity=0.397  Sum_probs=28.5

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEe
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEV   85 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~   85 (183)
                      -.++|.|++|+|||+|++.+...+...  |.+++++.-
T Consensus        14 fr~viIG~sGSGKT~li~~lL~~~~~~--f~~I~l~t~   49 (241)
T PF04665_consen   14 FRMVIIGKSGSGKTTLIKSLLYYLRHK--FDHIFLITP   49 (241)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHhhccc--CCEEEEEec
Confidence            357889999999999999999887765  666655533

This is thought to be an ATPase involved in viral DNA packaging [].

>PRK12608 transcription termination factor Rho; Provisional

Probab=98.39  E-value=4.3e-06  Score=66.56  Aligned_cols=103  Identities=11%  Similarity=0.131  Sum_probs=64.9

Q ss_pred             HHHHHHhc-cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEec-CCcCHHHHHHHHHHHhCCCchh---H-
Q 035585           36 KSIQDALT-DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVS-QTPDIKKIHGEIAEKLGLEFSE---E-  109 (183)
Q Consensus        36 ~~l~~~l~-~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~~~~~---~-  109 (183)
                      .++.+.+. -.+.+-.+|+|++|+|||||++.+++.+.....-..++|+-+. ......++++.+...+.....+   . 
T Consensus       121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~  200 (380)
T PRK12608        121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDE  200 (380)
T ss_pred             HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHH
Confidence            34555544 2344677999999999999999999988664112224555554 4467788888887766543211   1 


Q ss_pred             --HHHHHHHHHHHHH-hcCCeEEEEEeCCCCc
Q 035585          110 --AESRRASRLYERL-KKEKMILVILDNIWKY  138 (183)
Q Consensus       110 --~~~~~~~~~~~~~-~~~~~~llvlD~~~~~  138 (183)
                        ..........+++ .+++.++||+|++...
T Consensus       201 ~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~  232 (380)
T PRK12608        201 HIRVAELVLERAKRLVEQGKDVVILLDSLTRL  232 (380)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHH
Confidence              1111223333344 3589999999998643

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=98.38  E-value=6.8e-07  Score=64.49  Aligned_cols=122  Identities=18%  Similarity=0.231  Sum_probs=62.6

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcC----HHHHHH---------------HHHHHhCCCc
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPD----IKKIHG---------------EIAEKLGLEF  106 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~---------------~i~~~l~~~~  106 (183)
                      +...++|.|++|+|||||++.+...+...   .+.++++-.....    ......               .+.+.+... 
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~-  100 (178)
T cd03229          25 AGEIVALLGPSGSGKSTLLRCIAGLEEPD---SGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG-  100 (178)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeec-
Confidence            45789999999999999999998765431   2222221100000    000000               111111100 


Q ss_pred             hhHHHHHHHH-HHHHHHhcCCeEEEEEeCCCCccccc---ccCcCCCC-CCC-CcEEEEEecChHHHhhcCCCC
Q 035585          107 SEEAESRRAS-RLYERLKKEKMILVILDNIWKYLDLE---TVGIPFGD-DHR-GCKLLLTARDCNVLLNMSLCR  174 (183)
Q Consensus       107 ~~~~~~~~~~-~~~~~~~~~~~~llvlD~~~~~~~~~---~l~~~~~~-~~~-~~~iiitsr~~~~~~~~~~~~  174 (183)
                        .+..+... .+...+ ..++-++++||.....+..   .+...+.. ... +..++++||+.+.+..+....
T Consensus       101 --lS~G~~qr~~la~al-~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i  171 (178)
T cd03229         101 --LSGGQQQRVALARAL-AMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRV  171 (178)
T ss_pred             --CCHHHHHHHHHHHHH-HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEE
Confidence              11112222 222333 3788999999987554322   22222211 122 567999999998887655443

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=98.37  E-value=2.8e-06  Score=65.05  Aligned_cols=53  Identities=23%  Similarity=0.193  Sum_probs=34.5

Q ss_pred             HHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHH
Q 035585           33 STLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIK   92 (183)
Q Consensus        33 ~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (183)
                      +.++.+..++...  ..+.|.|++|+|||++|+.++..+..     ....+++.......
T Consensus         9 ~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~lg~-----~~~~i~~~~~~~~~   61 (262)
T TIGR02640         9 RVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKRDR-----PVMLINGDAELTTS   61 (262)
T ss_pred             HHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHhCC-----CEEEEeCCccCCHH
Confidence            4445555555432  56789999999999999999875422     34555665544433

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=98.37  E-value=1.5e-06  Score=65.10  Aligned_cols=52  Identities=13%  Similarity=0.255  Sum_probs=35.4

Q ss_pred             HHHHHHHHhc-cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585           34 TLKSIQDALT-DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ   87 (183)
Q Consensus        34 ~l~~l~~~l~-~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~   87 (183)
                      .+..+.++.. ....+.+.|+|++|+|||+|++.+++.....  ...+.++++..
T Consensus        28 ~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~--~~~~~~i~~~~   80 (227)
T PRK08903         28 LVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYG--GRNARYLDAAS   80 (227)
T ss_pred             HHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEEehHH
Confidence            3344445443 2445789999999999999999999887543  23455655433

>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals

Probab=98.36  E-value=1.1e-05  Score=63.42  Aligned_cols=44  Identities=20%  Similarity=0.458  Sum_probs=35.3

Q ss_pred             hHHHHHHHHHHhcc---CCccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           31 RLSTLKSIQDALTD---VNVNIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        31 R~~~l~~l~~~l~~---~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      |....+.|.+.+.+   ..+.+++|.|+=|+|||++++.+...+...
T Consensus         1 ~~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~   47 (325)
T PF07693_consen    1 RKPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED   47 (325)
T ss_pred             ChHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence            34455666676663   467789999999999999999999998876

Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=98.36  E-value=1.9e-06  Score=74.94  Aligned_cols=104  Identities=18%  Similarity=0.211  Sum_probs=58.5

Q ss_pred             cccccchHHHHHHHHHHhcc-------C--CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHH
Q 035585           25 YEAFKSRLSTLKSIQDALTD-------V--NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIH   95 (183)
Q Consensus        25 ~~~~~gR~~~l~~l~~~l~~-------~--~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (183)
                      ...++|.+..++.+.+.+..       .  +...++++||+|+|||+||+.++..+..     ..+.++++.-....   
T Consensus       453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~-----~~~~~d~se~~~~~---  524 (731)
T TIGR02639       453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGV-----HLERFDMSEYMEKH---  524 (731)
T ss_pred             hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcC-----CeEEEeCchhhhcc---
Confidence            44567777777777776551       1  2346899999999999999999987632     23444544321111   


Q ss_pred             HHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585           96 GEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY  138 (183)
Q Consensus        96 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~  138 (183)
                       .+...++.. +.....+....+...++....-+|+|||++..
T Consensus       525 -~~~~lig~~-~gyvg~~~~~~l~~~~~~~p~~VvllDEieka  565 (731)
T TIGR02639       525 -TVSRLIGAP-PGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA  565 (731)
T ss_pred             -cHHHHhcCC-CCCcccchhhHHHHHHHhCCCeEEEEechhhc
Confidence             111112111 11000111122334444456679999999865

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.36  E-value=1.5e-06  Score=63.79  Aligned_cols=55  Identities=11%  Similarity=0.048  Sum_probs=37.6

Q ss_pred             CCeEEEEEeCCCCccccc---ccCcCC-CCCCCCcEEEEEecChHHHhhcCCCCcchhh
Q 035585          125 EKMILVILDNIWKYLDLE---TVGIPF-GDDHRGCKLLLTARDCNVLLNMSLCRSEEEE  179 (183)
Q Consensus       125 ~~~~llvlD~~~~~~~~~---~l~~~~-~~~~~~~~iiitsr~~~~~~~~~~~~~~~~~  179 (183)
                      =++-+++|||+.+..+-+   ..+..+ .....|..++++||+-.++..+.....+...
T Consensus       153 M~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~  211 (240)
T COG1126         153 MDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQ  211 (240)
T ss_pred             CCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeC
Confidence            567899999998775422   112222 1234588999999999999988776665543

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=98.36  E-value=1.3e-06  Score=71.34  Aligned_cols=98  Identities=21%  Similarity=0.277  Sum_probs=60.5

Q ss_pred             cCCCcccccchHHHHHHHHHHhc----c---------CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585           21 SNKGYEAFKSRLSTLKSIQDALT----D---------VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ   87 (183)
Q Consensus        21 ~~~~~~~~~gR~~~l~~l~~~l~----~---------~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~   87 (183)
                      |.....++-|.+.+++.+.+++.    .         ..+..++|+|++|+|||++|+.+++.....  |     +.+..
T Consensus       178 p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~--f-----i~V~~  250 (438)
T PTZ00361        178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSAT--F-----LRVVG  250 (438)
T ss_pred             CCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCC--E-----EEEec
Confidence            44445566788888888887653    1         245679999999999999999999976542  2     22211


Q ss_pred             CcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585           88 TPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY  138 (183)
Q Consensus        88 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~  138 (183)
                      . .   +    ...+..     .....+..++.......+.+|+|||+|..
T Consensus       251 s-e---L----~~k~~G-----e~~~~vr~lF~~A~~~~P~ILfIDEID~l  288 (438)
T PTZ00361        251 S-E---L----IQKYLG-----DGPKLVRELFRVAEENAPSIVFIDEIDAI  288 (438)
T ss_pred             c-h---h----hhhhcc-----hHHHHHHHHHHHHHhCCCcEEeHHHHHHH
Confidence            1 1   1    111110     11122344555555577889999998743

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=98.35  E-value=6.7e-07  Score=66.43  Aligned_cols=23  Identities=26%  Similarity=0.351  Sum_probs=20.9

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFAR   69 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~   69 (183)
                      .+.++|+|++|+||||+++.+..
T Consensus        29 ~~~~~itGpNg~GKStlLk~i~~   51 (213)
T cd03281          29 PSIMVITGPNSSGKSVYLKQVAL   51 (213)
T ss_pred             ceEEEEECCCCCChHHHHHHHHH
Confidence            48899999999999999999874

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK10865 protein disaggregation chaperone; Provisional

Probab=98.35  E-value=1.6e-06  Score=76.37  Aligned_cols=107  Identities=17%  Similarity=0.224  Sum_probs=59.6

Q ss_pred             cccccchHHHHHHHHHHhcc--------CC-ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHH
Q 035585           25 YEAFKSRLSTLKSIQDALTD--------VN-VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIH   95 (183)
Q Consensus        25 ~~~~~gR~~~l~~l~~~l~~--------~~-~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (183)
                      ...++|....+..+...+..        .+ ...++++|++|+|||++|+.++..+...  ....+.++++.-... .  
T Consensus       567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~--~~~~i~id~se~~~~-~--  641 (857)
T PRK10865        567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS--DDAMVRIDMSEFMEK-H--  641 (857)
T ss_pred             CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC--CCcEEEEEhHHhhhh-h--
Confidence            34577888888888777651        11 2468999999999999999999876532  223445555432111 1  


Q ss_pred             HHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585           96 GEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY  138 (183)
Q Consensus        96 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~  138 (183)
                       ...+.++. .+..........+...++....-+|+|||++.+
T Consensus       642 -~~~~LiG~-~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka  682 (857)
T PRK10865        642 -SVSRLVGA-PPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA  682 (857)
T ss_pred             -hHHHHhCC-CCcccccchhHHHHHHHHhCCCCeEEEeehhhC
Confidence             11111221 111100011112333333344579999999855

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=98.35  E-value=7.9e-06  Score=60.31  Aligned_cols=88  Identities=19%  Similarity=0.268  Sum_probs=52.4

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHh----CCC-----c-hhHHHHHHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKL----GLE-----F-SEEAESRRA  115 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l----~~~-----~-~~~~~~~~~  115 (183)
                      ...++.|+|++|+|||+++.+++......  ...++|++... .....+. .++...    ...     . .........
T Consensus        11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~--g~~v~yi~~e~-~~~~rl~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   86 (209)
T TIGR02237        11 RGTITQIYGPPGSGKTNICMILAVNAARQ--GKKVVYIDTEG-LSPERFK-QIAEDRPERALSNFIVFEVFDFDEQGVAI   86 (209)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCC-CCHHHHH-HHHHhChHHHhcCEEEEECCCHHHHHHHH
Confidence            35789999999999999999998877543  45688988875 3332222 222221    000     0 001111223


Q ss_pred             HHHHHHHhcCCeEEEEEeCCCC
Q 035585          116 SRLYERLKKEKMILVILDNIWK  137 (183)
Q Consensus       116 ~~~~~~~~~~~~~llvlD~~~~  137 (183)
                      ..+...+...+.-+||||.+..
T Consensus        87 ~~l~~~~~~~~~~lvVIDSis~  108 (209)
T TIGR02237        87 QKTSKFIDRDSASLVVVDSFTA  108 (209)
T ss_pred             HHHHHHHhhcCccEEEEeCcHH
Confidence            4444444445678999999864

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=98.34  E-value=9.8e-07  Score=75.91  Aligned_cols=54  Identities=19%  Similarity=0.150  Sum_probs=34.3

Q ss_pred             HHHHhcCCeEEEEEeCCCCcccccc---cCcCCCCCCCCcEEEEEecChHHHhhcCC
Q 035585          119 YERLKKEKMILVILDNIWKYLDLET---VGIPFGDDHRGCKLLLTARDCNVLLNMSL  172 (183)
Q Consensus       119 ~~~~~~~~~~llvlD~~~~~~~~~~---l~~~~~~~~~~~~iiitsr~~~~~~~~~~  172 (183)
                      +.+..-.++-+|++||+.+..|-+.   +...+.....|..+|+++|....+.....
T Consensus       620 lARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adr  676 (709)
T COG2274         620 LARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADR  676 (709)
T ss_pred             HHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccE
Confidence            3333348999999999876543221   12333344556788888888888775544

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.33  E-value=1.4e-06  Score=61.45  Aligned_cols=119  Identities=18%  Similarity=0.206  Sum_probs=64.5

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcC--HHHHHHHHHHHhCCCchhHHHHHH-HHHHHHHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPD--IKKIHGEIAEKLGLEFSEEAESRR-ASRLYERL  122 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~-~~~~~~~~  122 (183)
                      +...++|.|++|+|||||++.+...+..   ..+.++++......  ...    ....+..- ++.+..+. ...+...+
T Consensus        24 ~g~~~~i~G~nGsGKStll~~l~g~~~~---~~G~i~~~~~~~~~~~~~~----~~~~i~~~-~qlS~G~~~r~~l~~~l   95 (157)
T cd00267          24 AGEIVALVGPNGSGKSTLLRAIAGLLKP---TSGEILIDGKDIAKLPLEE----LRRRIGYV-PQLSGGQRQRVALARAL   95 (157)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCC---CccEEEECCEEcccCCHHH----HHhceEEE-eeCCHHHHHHHHHHHHH
Confidence            3478999999999999999999887643   23333433221111  111    11111110 00111222 22233333


Q ss_pred             hcCCeEEEEEeCCCCccc---ccccCcCCCC-CCCCcEEEEEecChHHHhhcCCC
Q 035585          123 KKEKMILVILDNIWKYLD---LETVGIPFGD-DHRGCKLLLTARDCNVLLNMSLC  173 (183)
Q Consensus       123 ~~~~~~llvlD~~~~~~~---~~~l~~~~~~-~~~~~~iiitsr~~~~~~~~~~~  173 (183)
                      . .++-++++||+....+   ...+...+.. ...+..++++||+.+.+.....+
T Consensus        96 ~-~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~  149 (157)
T cd00267          96 L-LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADR  149 (157)
T ss_pred             h-cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCE
Confidence            3 6789999999875543   2222222211 11256799999999988876443

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>CHL00095 clpC Clp protease ATP binding subunit

Probab=98.32  E-value=2e-06  Score=75.70  Aligned_cols=133  Identities=17%  Similarity=0.191  Sum_probs=72.6

Q ss_pred             cccccchHHHHHHHHHHhcc-------C--CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHH
Q 035585           25 YEAFKSRLSTLKSIQDALTD-------V--NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIH   95 (183)
Q Consensus        25 ~~~~~gR~~~l~~l~~~l~~-------~--~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (183)
                      ...++|.+..+..+.+.+..       .  +...++++||+|+|||+||+.++..+...  ....+.++++.-.....  
T Consensus       508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~--~~~~~~~d~s~~~~~~~--  583 (821)
T CHL00095        508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS--EDAMIRLDMSEYMEKHT--  583 (821)
T ss_pred             cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC--ccceEEEEchhcccccc--
Confidence            45677888888888776641       1  22467899999999999999999876432  12344445443221111  


Q ss_pred             HHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--cccccCcCCCC-----------CCCCcEEEEEec
Q 035585           96 GEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKYL--DLETVGIPFGD-----------DHRGCKLLLTAR  162 (183)
Q Consensus        96 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~--~~~~l~~~~~~-----------~~~~~~iiitsr  162 (183)
                        +.+.++.+ ++-........+...++....-+|+|||++...  .++.++..+..           ....+.+|+||.
T Consensus       584 --~~~l~g~~-~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn  660 (821)
T CHL00095        584 --VSKLIGSP-PGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSN  660 (821)
T ss_pred             --HHHhcCCC-CcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCC
Confidence              11111111 110000111233444554555799999998662  23333333322           135677777877


Q ss_pred             Ch
Q 035585          163 DC  164 (183)
Q Consensus       163 ~~  164 (183)
                      -.
T Consensus       661 ~g  662 (821)
T CHL00095        661 LG  662 (821)
T ss_pred             cc
Confidence            43

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=98.32  E-value=1.9e-06  Score=71.78  Aligned_cols=96  Identities=21%  Similarity=0.252  Sum_probs=53.9

Q ss_pred             CCcccccchHHHHHHHHHHhc------------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcC
Q 035585           23 KGYEAFKSRLSTLKSIQDALT------------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPD   90 (183)
Q Consensus        23 ~~~~~~~gR~~~l~~l~~~l~------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (183)
                      ....++.|-+.....+.+.+.            ...++.++++||+|+|||++++.++......       ++.++..  
T Consensus        52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~-------~~~i~~~--  122 (495)
T TIGR01241        52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP-------FFSISGS--  122 (495)
T ss_pred             CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC-------eeeccHH--
Confidence            334455666555544444322            2334569999999999999999998764322       2222211  


Q ss_pred             HHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585           91 IKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY  138 (183)
Q Consensus        91 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~  138 (183)
                        .+.....   +.      ....+..++.......+.+|+|||+|..
T Consensus       123 --~~~~~~~---g~------~~~~l~~~f~~a~~~~p~Il~iDEid~l  159 (495)
T TIGR01241       123 --DFVEMFV---GV------GASRVRDLFEQAKKNAPCIIFIDEIDAV  159 (495)
T ss_pred             --HHHHHHh---cc------cHHHHHHHHHHHHhcCCCEEEEechhhh
Confidence              1111110   10      1123344555555567889999999754

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]

Probab=98.31  E-value=8.3e-06  Score=68.80  Aligned_cols=136  Identities=21%  Similarity=0.169  Sum_probs=89.0

Q ss_pred             CcccccchHHHHHHHHHHhc----c-CCccEEEEEeCCCCcHHHHHHHHHhHHhhh---hccc--ceEEEEecCCcCHHH
Q 035585           24 GYEAFKSRLSTLKSIQDALT----D-VNVNIVGVYGMGGIGKTTLVKEFARQASEE---KLFD--QVVFSEVSQTPDIKK   93 (183)
Q Consensus        24 ~~~~~~gR~~~l~~l~~~l~----~-~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~   93 (183)
                      -+..+-+|+.+...|..++.    . .....+-|.|.+|+|||..+..+...+...   .-..  ..+.+|...-....+
T Consensus       394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~  473 (767)
T KOG1514|consen  394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPRE  473 (767)
T ss_pred             ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHH
Confidence            45677899999999999876    2 334588999999999999999999877632   1111  234556666677888


Q ss_pred             HHHHHHHHhCCCchhHHHHHHHHHHHHHHh----cCCeEEEEEeCCCCccc--ccccCcCCCCC-CCCcEEEEEe
Q 035585           94 IHGEIAEKLGLEFSEEAESRRASRLYERLK----KEKMILVILDNIWKYLD--LETVGIPFGDD-HRGCKLLLTA  161 (183)
Q Consensus        94 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~llvlD~~~~~~~--~~~l~~~~~~~-~~~~~iiits  161 (183)
                      ++..|...+.........  .++.+-.++.    .....+|++||+|.+..  .+-+...++|. .++++++|.+
T Consensus       474 ~Y~~I~~~lsg~~~~~~~--al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~  546 (767)
T KOG1514|consen  474 IYEKIWEALSGERVTWDA--ALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIA  546 (767)
T ss_pred             HHHHHHHhcccCcccHHH--HHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEE
Confidence            999999888665444322  2233333332    25778999999987643  33334444442 3355544443

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=98.30  E-value=1.4e-06  Score=76.61  Aligned_cols=131  Identities=18%  Similarity=0.209  Sum_probs=68.9

Q ss_pred             ccccchHHHHHHHHHHhc-------cC--CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHH
Q 035585           26 EAFKSRLSTLKSIQDALT-------DV--NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHG   96 (183)
Q Consensus        26 ~~~~gR~~~l~~l~~~l~-------~~--~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (183)
                      ..++|.+..++.+.+.+.       ..  +..+++++||+|+|||.||+.++..+...  ....+-++++.-...    .
T Consensus       566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~--~~~~~~~dmse~~~~----~  639 (852)
T TIGR03345       566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG--EQNLITINMSEFQEA----H  639 (852)
T ss_pred             CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC--CcceEEEeHHHhhhh----h
Confidence            456777777777776653       11  22368999999999999999998876432  122233333321110    1


Q ss_pred             HHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--cccccCcCCCCC-----------CCCcEEEEEecC
Q 035585           97 EIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKYL--DLETVGIPFGDD-----------HRGCKLLLTARD  163 (183)
Q Consensus        97 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~--~~~~l~~~~~~~-----------~~~~~iiitsr~  163 (183)
                      .+...++. .++.......-.+...++....-+|+|||++...  .++.+...+...           ...+.+|+||.-
T Consensus       640 ~~~~l~g~-~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNl  718 (852)
T TIGR03345       640 TVSRLKGS-PPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNA  718 (852)
T ss_pred             hhccccCC-CCCcccccccchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCC
Confidence            11111121 1111000001123344454667899999998552  233333333222           245767777664

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>PRK06526 transposase; Provisional

Probab=98.30  E-value=1.1e-06  Score=66.90  Aligned_cols=29  Identities=28%  Similarity=0.284  Sum_probs=25.0

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      ..+.+.++|++|+|||+|+..+.......
T Consensus        97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~  125 (254)
T PRK06526         97 GKENVVFLGPPGTGKTHLAIGLGIRACQA  125 (254)
T ss_pred             cCceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence            45689999999999999999998877654

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=98.30  E-value=3.3e-06  Score=70.96  Aligned_cols=27  Identities=30%  Similarity=0.448  Sum_probs=23.8

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|+|++|+|||||++.++..+.
T Consensus        26 ~Ge~~~liG~NGsGKSTLl~~l~Gl~~   52 (530)
T PRK15064         26 GGNRYGLIGANGCGKSTFMKILGGDLE   52 (530)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            446899999999999999999998664

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=98.30  E-value=3.6e-06  Score=62.35  Aligned_cols=27  Identities=26%  Similarity=0.388  Sum_probs=23.4

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +..+++|+|++|+|||||++.+.....
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~   50 (213)
T cd03235          24 PGEFLAIVGPNGAGKSTLLKAILGLLK   50 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence            457899999999999999999987653

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=98.30  E-value=1.2e-06  Score=75.32  Aligned_cols=101  Identities=18%  Similarity=0.310  Sum_probs=66.4

Q ss_pred             cccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcc----cc-eEEEEecCCcCHHHHHHHHH
Q 035585           25 YEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLF----DQ-VVFSEVSQTPDIKKIHGEIA   99 (183)
Q Consensus        25 ~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~i~   99 (183)
                      -...+||++|+.++.+.|.+.....-.++|++|+|||.++..++.+.-..+..    +. ++-.++..-         ++
T Consensus       169 lDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~L---------vA  239 (786)
T COG0542         169 LDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSL---------VA  239 (786)
T ss_pred             CCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHH---------hc
Confidence            34578999999999999986555666888999999999999999887654321    11 222222110         00


Q ss_pred             HHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585          100 EKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY  138 (183)
Q Consensus       100 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~  138 (183)
                         +....+ ..++.+..+...+.+..+++|+|||+|..
T Consensus       240 ---GakyRG-eFEeRlk~vl~ev~~~~~vILFIDEiHti  274 (786)
T COG0542         240 ---GAKYRG-EFEERLKAVLKEVEKSKNVILFIDEIHTI  274 (786)
T ss_pred             ---cccccC-cHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence               111112 23344556666666566999999999855

>PRK12377 putative replication protein; Provisional

Probab=98.29  E-value=1e-05  Score=61.36  Aligned_cols=74  Identities=19%  Similarity=0.254  Sum_probs=47.0

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcC
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKE  125 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~  125 (183)
                      ....+.++|++|+|||+||..+++.+..+  ...+.|+.++      ++...+.......       .....+++.+  .
T Consensus       100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~~------~l~~~l~~~~~~~-------~~~~~~l~~l--~  162 (248)
T PRK12377        100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTVP------DVMSRLHESYDNG-------QSGEKFLQEL--C  162 (248)
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEHH------HHHHHHHHHHhcc-------chHHHHHHHh--c
Confidence            34689999999999999999999998764  3345665443      3333443322111       0112233333  5


Q ss_pred             CeEEEEEeCCC
Q 035585          126 KMILVILDNIW  136 (183)
Q Consensus       126 ~~~llvlD~~~  136 (183)
                      +.-||||||+.
T Consensus       163 ~~dLLiIDDlg  173 (248)
T PRK12377        163 KVDLLVLDEIG  173 (248)
T ss_pred             CCCEEEEcCCC
Confidence            77899999995

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.29  E-value=3.3e-06  Score=61.12  Aligned_cols=27  Identities=30%  Similarity=0.431  Sum_probs=23.5

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|.|++|+|||||++.+.....
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~   51 (182)
T cd03215          25 AGEIVGIAGLVGNGQTELAEALFGLRP   51 (182)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            446899999999999999999987654

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=5.3e-06  Score=63.78  Aligned_cols=73  Identities=25%  Similarity=0.344  Sum_probs=50.2

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcC
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKE  125 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~  125 (183)
                      +-+-++++||+|+|||.||++++.+...      . |+.+++..-    ..   ..++      ..+..+..+++..+++
T Consensus       165 PwrgiLLyGPPGTGKSYLAKAVATEAnS------T-FFSvSSSDL----vS---KWmG------ESEkLVknLFemARe~  224 (439)
T KOG0739|consen  165 PWRGILLYGPPGTGKSYLAKAVATEANS------T-FFSVSSSDL----VS---KWMG------ESEKLVKNLFEMAREN  224 (439)
T ss_pred             cceeEEEeCCCCCcHHHHHHHHHhhcCC------c-eEEeehHHH----HH---HHhc------cHHHHHHHHHHHHHhc
Confidence            3467999999999999999999886443      2 223333211    11   1122      1234567788888889


Q ss_pred             CeEEEEEeCCCCc
Q 035585          126 KMILVILDNIWKY  138 (183)
Q Consensus       126 ~~~llvlD~~~~~  138 (183)
                      ++.+|+|||+|.+
T Consensus       225 kPSIIFiDEiDsl  237 (439)
T KOG0739|consen  225 KPSIIFIDEIDSL  237 (439)
T ss_pred             CCcEEEeehhhhh
Confidence            9999999999866

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=98.28  E-value=1.1e-06  Score=65.27  Aligned_cols=49  Identities=14%  Similarity=0.150  Sum_probs=30.8

Q ss_pred             cCCeEEEEEeCCCCccc---ccccCcCCC--CCCCCcEEEEEecChHHHhhcCC
Q 035585          124 KEKMILVILDNIWKYLD---LETVGIPFG--DDHRGCKLLLTARDCNVLLNMSL  172 (183)
Q Consensus       124 ~~~~~llvlD~~~~~~~---~~~l~~~~~--~~~~~~~iiitsr~~~~~~~~~~  172 (183)
                      ...+-+|+.||...-.+   -..+...+.  ....|..+|++|||..++.....
T Consensus       158 ~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr  211 (226)
T COG1136         158 INNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADR  211 (226)
T ss_pred             hcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCE
Confidence            48899999999753321   111112222  12347789999999999885443

>PRK08116 hypothetical protein; Validated

Probab=98.28  E-value=1.5e-05  Score=61.31  Aligned_cols=101  Identities=20%  Similarity=0.176  Sum_probs=56.7

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCe
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKM  127 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  127 (183)
                      ..+.|+|++|+|||.||..+++.+..+  ...++|++.      .+++..+...+.....     .....+.+.+.  ..
T Consensus       115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~~------~~ll~~i~~~~~~~~~-----~~~~~~~~~l~--~~  179 (268)
T PRK08116        115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVNF------PQLLNRIKSTYKSSGK-----EDENEIIRSLV--NA  179 (268)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEH------HHHHHHHHHHHhcccc-----ccHHHHHHHhc--CC
Confidence            458999999999999999999998765  334666543      3344444433322111     11223444443  33


Q ss_pred             EEEEEeCCCC--cccc--cccCcCCCC-CCCCcEEEEEecC
Q 035585          128 ILVILDNIWK--YLDL--ETVGIPFGD-DHRGCKLLLTARD  163 (183)
Q Consensus       128 ~llvlD~~~~--~~~~--~~l~~~~~~-~~~~~~iiitsr~  163 (183)
                      -+|||||+..  ..+|  ..+...++. ...+..+|+||..
T Consensus       180 dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~  220 (268)
T PRK08116        180 DLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL  220 (268)
T ss_pred             CEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence            4899999953  2222  222222222 1234557777764

>PF14516 AAA_35: AAA-like domain

Probab=98.27  E-value=3.4e-05  Score=61.13  Aligned_cols=115  Identities=15%  Similarity=0.226  Sum_probs=71.2

Q ss_pred             CCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC-----cCHHHHH-
Q 035585           22 NKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT-----PDIKKIH-   95 (183)
Q Consensus        22 ~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-   95 (183)
                      +.+...++.|...-+.+.+.+.+ +...+.|.|+..+|||+|+..+.+.+...  -..++++++...     .+...++ 
T Consensus         7 ~~~~~~Yi~R~~~e~~~~~~i~~-~G~~~~I~apRq~GKTSll~~l~~~l~~~--~~~~v~id~~~~~~~~~~~~~~f~~   83 (331)
T PF14516_consen    7 PLDSPFYIERPPAEQECYQEIVQ-PGSYIRIKAPRQMGKTSLLLRLLERLQQQ--GYRCVYIDLQQLGSAIFSDLEQFLR   83 (331)
T ss_pred             CCCCCcccCchHHHHHHHHHHhc-CCCEEEEECcccCCHHHHHHHHHHHHHHC--CCEEEEEEeecCCCcccCCHHHHHH
Confidence            34555678899666666666643 35789999999999999999999988875  234667777542     2344444 


Q ss_pred             ---HHHHHHhCCCchhHHHHH-------HHHHHH-HHHh--cCCeEEEEEeCCCCcc
Q 035585           96 ---GEIAEKLGLEFSEEAESR-------RASRLY-ERLK--KEKMILVILDNIWKYL  139 (183)
Q Consensus        96 ---~~i~~~l~~~~~~~~~~~-------~~~~~~-~~~~--~~~~~llvlD~~~~~~  139 (183)
                         ..+.+.+.....-...+.       .....+ +.+.  .+++++|+|||+|...
T Consensus        84 ~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~  140 (331)
T PF14516_consen   84 WFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLF  140 (331)
T ss_pred             HHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhc
Confidence               444555544322111111       112222 2221  2689999999998653

>PRK07952 DNA replication protein DnaC; Validated

Probab=98.27  E-value=1.6e-05  Score=60.24  Aligned_cols=89  Identities=18%  Similarity=0.240  Sum_probs=52.4

Q ss_pred             HHHHHHHHhcc--CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHH
Q 035585           34 TLKSIQDALTD--VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAE  111 (183)
Q Consensus        34 ~l~~l~~~l~~--~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~  111 (183)
                      .+..+..+..+  .....+.++|++|+|||+|+..+++.+...  ...++++.      ..++...+...+..  ..   
T Consensus        84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~it------~~~l~~~l~~~~~~--~~---  150 (244)
T PRK07952         84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR--GKSVLIIT------VADIMSAMKDTFSN--SE---  150 (244)
T ss_pred             HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEE------HHHHHHHHHHHHhh--cc---
Confidence            44455544432  223578999999999999999999988764  33456653      33344444333210  00   


Q ss_pred             HHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585          112 SRRASRLYERLKKEKMILVILDNIWKY  138 (183)
Q Consensus       112 ~~~~~~~~~~~~~~~~~llvlD~~~~~  138 (183)
                       .....++..+.  +.-+|||||+...
T Consensus       151 -~~~~~~l~~l~--~~dlLvIDDig~~  174 (244)
T PRK07952        151 -TSEEQLLNDLS--NVDLLVIDEIGVQ  174 (244)
T ss_pred             -ccHHHHHHHhc--cCCEEEEeCCCCC
Confidence             11123344443  4668999998644

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=1.5e-06  Score=67.23  Aligned_cols=28  Identities=32%  Similarity=0.417  Sum_probs=25.0

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      .++++++||||+|||+|++++++++..+
T Consensus       177 NRliLlhGPPGTGKTSLCKaLaQkLSIR  204 (423)
T KOG0744|consen  177 NRLILLHGPPGTGKTSLCKALAQKLSIR  204 (423)
T ss_pred             eeEEEEeCCCCCChhHHHHHHHHhheee
Confidence            3789999999999999999999998653

>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=2.4e-06  Score=64.25  Aligned_cols=74  Identities=23%  Similarity=0.266  Sum_probs=50.6

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhc
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKK  124 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~  124 (183)
                      ++++-++++||+|+|||.|++++++.-...       |+.+...    ++..+.+   +. .     ..+++.++...++
T Consensus       187 dpprgvllygppg~gktml~kava~~t~a~-------firvvgs----efvqkyl---ge-g-----prmvrdvfrlake  246 (408)
T KOG0727|consen  187 DPPRGVLLYGPPGTGKTMLAKAVANHTTAA-------FIRVVGS----EFVQKYL---GE-G-----PRMVRDVFRLAKE  246 (408)
T ss_pred             CCCcceEEeCCCCCcHHHHHHHHhhccchh-------eeeeccH----HHHHHHh---cc-C-----cHHHHHHHHHHhc
Confidence            577889999999999999999999876553       2333221    2222222   21 1     2345666666777


Q ss_pred             CCeEEEEEeCCCCc
Q 035585          125 EKMILVILDNIWKY  138 (183)
Q Consensus       125 ~~~~llvlD~~~~~  138 (183)
                      +.+.++++|+++..
T Consensus       247 napsiifideidai  260 (408)
T KOG0727|consen  247 NAPSIIFIDEIDAI  260 (408)
T ss_pred             cCCcEEEeehhhhH
Confidence            89999999998743

>cd01131 PilT Pilus retraction ATPase PilT

Probab=98.27  E-value=1.3e-06  Score=64.08  Aligned_cols=112  Identities=11%  Similarity=0.084  Sum_probs=58.0

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCe
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKM  127 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  127 (183)
                      .+++|+|++|+||||++..+...+... ....++.+.-+....... ...+..+......   .......+...++ ..+
T Consensus         2 GlilI~GptGSGKTTll~~ll~~~~~~-~~~~i~t~e~~~E~~~~~-~~~~i~q~~vg~~---~~~~~~~i~~aLr-~~p   75 (198)
T cd01131           2 GLVLVTGPTGSGKSTTLAAMIDYINKN-KTHHILTIEDPIEFVHES-KRSLINQREVGLD---TLSFENALKAALR-QDP   75 (198)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhhhc-CCcEEEEEcCCccccccC-ccceeeecccCCC---ccCHHHHHHHHhc-CCc
Confidence            578999999999999999988776543 111222222111100000 0011110000000   1111223333444 568


Q ss_pred             EEEEEeCCCCcccccccCcCCCCCCCCcEEEEEecChHHHh
Q 035585          128 ILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVLL  168 (183)
Q Consensus       128 ~llvlD~~~~~~~~~~l~~~~~~~~~~~~iiitsr~~~~~~  168 (183)
                      -++++||+.+.+.+.......   ..|..++.|+|..+...
T Consensus        76 d~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~~  113 (198)
T cd01131          76 DVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAAK  113 (198)
T ss_pred             CEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHHH
Confidence            899999997665443332221   23556888999877654

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=98.27  E-value=5.1e-06  Score=71.23  Aligned_cols=49  Identities=20%  Similarity=0.237  Sum_probs=32.5

Q ss_pred             CCeEEEEEeCCCCccccccc---CcCCCCCCCCcEEEEEecChHHHhhcCCCCc
Q 035585          125 EKMILVILDNIWKYLDLETV---GIPFGDDHRGCKLLLTARDCNVLLNMSLCRS  175 (183)
Q Consensus       125 ~~~~llvlD~~~~~~~~~~l---~~~~~~~~~~~~iiitsr~~~~~~~~~~~~~  175 (183)
                      .++-+|++||..+..+....   ...+... .+ .||++|||..++..+.+...
T Consensus       173 ~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~-~~-tvlivsHd~~~l~~~~d~i~  224 (635)
T PRK11147        173 SNPDVLLLDEPTNHLDIETIEWLEGFLKTF-QG-SIIFISHDRSFIRNMATRIV  224 (635)
T ss_pred             cCCCEEEEcCCCCccCHHHHHHHHHHHHhC-CC-EEEEEeCCHHHHHHhcCeEE
Confidence            67889999999877543222   2222222 24 69999999999887665443

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=98.27  E-value=3.5e-06  Score=72.22  Aligned_cols=50  Identities=24%  Similarity=0.187  Sum_probs=33.2

Q ss_pred             cCCeEEEEEeCCCCccccccc---CcCCCCCCCCcEEEEEecChHHHhhcCCCCc
Q 035585          124 KEKMILVILDNIWKYLDLETV---GIPFGDDHRGCKLLLTARDCNVLLNMSLCRS  175 (183)
Q Consensus       124 ~~~~~llvlD~~~~~~~~~~l---~~~~~~~~~~~~iiitsr~~~~~~~~~~~~~  175 (183)
                      ..++-+|+|||..+..+....   ...+... .+ .||++|||..++..+.+...
T Consensus       165 ~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~-~~-tviivsHd~~~l~~~~d~i~  217 (638)
T PRK10636        165 ICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY-QG-TLILISHDRDFLDPIVDKII  217 (638)
T ss_pred             ccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC-CC-eEEEEeCCHHHHHHhcCEEE
Confidence            377889999999877553332   2222222 24 69999999999887665443

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.26  E-value=5.2e-06  Score=61.37  Aligned_cols=27  Identities=26%  Similarity=0.342  Sum_probs=23.2

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +..+++|.|++|+|||||++.++....
T Consensus        26 ~G~~~~l~G~nGsGKSTLl~~l~G~~~   52 (211)
T cd03225          26 KGEFVLIVGPNGSGKSTLLRLLNGLLG   52 (211)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            457899999999999999999986543

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK04296 thymidine kinase; Provisional

Probab=98.26  E-value=7.6e-07  Score=64.95  Aligned_cols=110  Identities=17%  Similarity=0.174  Sum_probs=59.9

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchh---HHHHHHHHHHHHHHhc
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSE---EAESRRASRLYERLKK  124 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~~~~~  124 (183)
                      .+.+++|+.|+||||++..++.+....  ...++++...-+  .......+++.++...+.   ....+....+..  ..
T Consensus         3 ~i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~k~~~d--~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~   76 (190)
T PRK04296          3 KLEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVFKPAID--DRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EG   76 (190)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEEecccc--ccccCCcEecCCCCcccceEeCChHHHHHHHHh--hC
Confidence            467899999999999999999888654  233444421101  111122344444432221   111122222222  33


Q ss_pred             CCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecChH
Q 035585          125 EKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDCN  165 (183)
Q Consensus       125 ~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~~  165 (183)
                      ++.-+|++||++-..  ++..+...+  ...|..+++|.++..
T Consensus        77 ~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~  117 (190)
T PRK04296         77 EKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD  117 (190)
T ss_pred             CCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence            456799999997542  122222221  345788999999844

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.26  E-value=4.7e-06  Score=61.38  Aligned_cols=27  Identities=37%  Similarity=0.454  Sum_probs=23.4

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|.|++|+|||||++.++....
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   51 (205)
T cd03226          25 AGEIIALTGKNGAGKTTLAKILAGLIK   51 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            457899999999999999999987653

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK08084 DNA replication initiation factor; Provisional

Probab=98.26  E-value=7.2e-06  Score=61.83  Aligned_cols=52  Identities=19%  Similarity=0.301  Sum_probs=37.4

Q ss_pred             HHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEec
Q 035585           33 STLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVS   86 (183)
Q Consensus        33 ~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~   86 (183)
                      ..+..+..+......+.+.|+|++|+|||+|+..+++.....  ...+.|+.+.
T Consensus        31 ~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~   82 (235)
T PRK08084         31 SLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLD   82 (235)
T ss_pred             HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHH
Confidence            345555555544555789999999999999999999887653  3346666554

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=98.25  E-value=6.4e-06  Score=62.84  Aligned_cols=27  Identities=33%  Similarity=0.399  Sum_probs=23.6

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|.|++|+|||||++.++....
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   52 (255)
T PRK11248         26 SGELLVVLGPSGCGKTTLLNLIAGFVP   52 (255)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            457899999999999999999987654

>PRK08058 DNA polymerase III subunit delta'; Validated

Probab=98.25  E-value=7.1e-06  Score=64.88  Aligned_cols=130  Identities=12%  Similarity=0.078  Sum_probs=70.7

Q ss_pred             cc-hHHHHHHHHHHhccCC-ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHH----Hh
Q 035585           29 KS-RLSTLKSIQDALTDVN-VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAE----KL  102 (183)
Q Consensus        29 ~g-R~~~l~~l~~~l~~~~-~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----~l  102 (183)
                      +| -+...+.|.+.+...+ ++.++++|++|+|||++|+.+...+-........   .+....    .+..+..    .+
T Consensus         8 ~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~---~cg~C~----~c~~~~~~~hpD~   80 (329)
T PRK08058          8 TALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE---PCGTCT----NCKRIDSGNHPDV   80 (329)
T ss_pred             HhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC---CCCcCH----HHHHHhcCCCCCE
Confidence            44 5556677777776444 4567999999999999999998876432111000   000000    0000000    00


Q ss_pred             CCCch--hHHHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecChH
Q 035585          103 GLEFS--EEAESRRASRLYERLK----KEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDCN  165 (183)
Q Consensus       103 ~~~~~--~~~~~~~~~~~~~~~~----~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~~  165 (183)
                      ..-.+  .....+.+..+.+.+.    ..++.++|||+++.+.  ..+.++..+.....++.+|++|.+..
T Consensus        81 ~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~  151 (329)
T PRK08058         81 HLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKH  151 (329)
T ss_pred             EEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChH
Confidence            00000  0001122223333221    3567899999998774  46667677766677888888877544

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=98.25  E-value=1.3e-05  Score=61.13  Aligned_cols=90  Identities=18%  Similarity=0.199  Sum_probs=54.5

Q ss_pred             hHHHHHHHHHHhc-cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhH
Q 035585           31 RLSTLKSIQDALT-DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEE  109 (183)
Q Consensus        31 R~~~l~~l~~~l~-~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~  109 (183)
                      +.+.+..+..... =++...++++|++|+|||.||.++.+++...  ...+.|++      ..++...+........   
T Consensus        88 ~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~--g~sv~f~~------~~el~~~Lk~~~~~~~---  156 (254)
T COG1484          88 DKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLKA--GISVLFIT------APDLLSKLKAAFDEGR---  156 (254)
T ss_pred             hHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhcCc---
Confidence            4444444443322 1266789999999999999999999999832  33456644      3445556655443310   


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 035585          110 AESRRASRLYERLKKEKMILVILDNIWK  137 (183)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~llvlD~~~~  137 (183)
                       .   -..+...+  .+--||||||+..
T Consensus       157 -~---~~~l~~~l--~~~dlLIiDDlG~  178 (254)
T COG1484         157 -L---EEKLLREL--KKVDLLIIDDIGY  178 (254)
T ss_pred             -h---HHHHHHHh--hcCCEEEEecccC
Confidence             0   11222223  4566899999864

>PRK09183 transposase/IS protein; Provisional

Probab=98.24  E-value=1.1e-06  Score=67.08  Aligned_cols=37  Identities=24%  Similarity=0.295  Sum_probs=27.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEE
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSE   84 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~   84 (183)
                      +...+.|+|++|+|||+|+..+.......  ...+.|++
T Consensus       101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~--G~~v~~~~  137 (259)
T PRK09183        101 RNENIVLLGPSGVGKTHLAIALGYEAVRA--GIKVRFTT  137 (259)
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEe
Confidence            34678899999999999999998765543  22345543

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=98.24  E-value=1.4e-05  Score=65.64  Aligned_cols=77  Identities=17%  Similarity=0.322  Sum_probs=48.4

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCC
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEK  126 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~  126 (183)
                      ...+.|+|++|+|||+|+..+.+.+.....-..+.|+++.      ++...+...+...        ....+.+... .+
T Consensus       130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~------~f~~~~~~~~~~~--------~~~~f~~~~~-~~  194 (440)
T PRK14088        130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE------KFLNDLVDSMKEG--------KLNEFREKYR-KK  194 (440)
T ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHhcc--------cHHHHHHHHH-hc
Confidence            3469999999999999999999988764222346666542      3444454443221        1122333332 34


Q ss_pred             eEEEEEeCCCCc
Q 035585          127 MILVILDNIWKY  138 (183)
Q Consensus       127 ~~llvlD~~~~~  138 (183)
                      .-+|+|||++..
T Consensus       195 ~dvLlIDDi~~l  206 (440)
T PRK14088        195 VDVLLIDDVQFL  206 (440)
T ss_pred             CCEEEEechhhh
Confidence            668999999854

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=98.24  E-value=7.2e-06  Score=70.34  Aligned_cols=126  Identities=18%  Similarity=0.199  Sum_probs=67.1

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhh---ccc---ceEEEEecCCc--------CHHH------------HHHHHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEK---LFD---QVVFSEVSQTP--------DIKK------------IHGEIA   99 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~---~~~---~~~~~~~~~~~--------~~~~------------~~~~i~   99 (183)
                      +...++|+|++|+|||||++.+........   .+.   .+.|+  ++..        ....            -...++
T Consensus       337 ~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~--~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L  414 (638)
T PRK10636        337 PGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYF--AQHQLEFLRADESPLQHLARLAPQELEQKLRDYL  414 (638)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEe--cCcchhhCCccchHHHHHHHhCchhhHHHHHHHH
Confidence            456899999999999999999998764321   111   12222  2210        1111            111223


Q ss_pred             HHhCCCch-------hHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcccccc---cCcCCCCCCCCcEEEEEecChHHHhh
Q 035585          100 EKLGLEFS-------EEAESRRASRLYERLKKEKMILVILDNIWKYLDLET---VGIPFGDDHRGCKLLLTARDCNVLLN  169 (183)
Q Consensus       100 ~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~~~~---l~~~~~~~~~~~~iiitsr~~~~~~~  169 (183)
                      ..++....       ..+..+.....+......++-+|++||..+..+...   +...+... .| .||++|||..++..
T Consensus       415 ~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~g-tvi~vSHd~~~~~~  492 (638)
T PRK10636        415 GGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF-EG-ALVVVSHDRHLLRS  492 (638)
T ss_pred             HHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-CC-eEEEEeCCHHHHHH
Confidence            33322110       011122222223333337889999999986654222   22222222 35 59999999999887


Q ss_pred             cCCCCc
Q 035585          170 MSLCRS  175 (183)
Q Consensus       170 ~~~~~~  175 (183)
                      +.+...
T Consensus       493 ~~d~i~  498 (638)
T PRK10636        493 TTDDLY  498 (638)
T ss_pred             hCCEEE
Confidence            665443

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=98.24  E-value=5.4e-06  Score=61.41  Aligned_cols=27  Identities=30%  Similarity=0.409  Sum_probs=23.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|.|++|+|||||++.+...+.
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03259          25 PGEFLALLGPSGCGKTTLLRLIAGLER   51 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            457899999999999999999987653

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=98.23  E-value=1e-06  Score=64.83  Aligned_cols=23  Identities=17%  Similarity=0.187  Sum_probs=20.9

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFAR   69 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~   69 (183)
                      ...++|+|++|+||||+++.+..
T Consensus        29 ~~~~~l~G~Ng~GKStll~~i~~   51 (202)
T cd03243          29 GRLLLITGPNMGGKSTYLRSIGL   51 (202)
T ss_pred             CeEEEEECCCCCccHHHHHHHHH
Confidence            36899999999999999999984

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.23  E-value=8e-06  Score=65.31  Aligned_cols=89  Identities=16%  Similarity=0.155  Sum_probs=52.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC-cCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhc
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT-PDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKK  124 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~  124 (183)
                      +..+++++|++|+||||++..+...+....-...+.++..... ..-.+.+....+.++.+.............+..+  
T Consensus       136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l--  213 (374)
T PRK14722        136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL--  213 (374)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh--
Confidence            3578999999999999999999987654311124555554432 2344555555666655443322222223333333  


Q ss_pred             CCeEEEEEeCCC
Q 035585          125 EKMILVILDNIW  136 (183)
Q Consensus       125 ~~~~llvlD~~~  136 (183)
                      .+.-+++||.+.
T Consensus       214 ~~~DlVLIDTaG  225 (374)
T PRK14722        214 RNKHMVLIDTIG  225 (374)
T ss_pred             cCCCEEEEcCCC
Confidence            344666688775

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=98.23  E-value=3.1e-06  Score=73.40  Aligned_cols=104  Identities=14%  Similarity=0.175  Sum_probs=58.6

Q ss_pred             cccccchHHHHHHHHHHhcc---------CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHH
Q 035585           25 YEAFKSRLSTLKSIQDALTD---------VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIH   95 (183)
Q Consensus        25 ~~~~~gR~~~l~~l~~~l~~---------~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (183)
                      ...++|-+..++.+.+.+..         .+...++++||+|+|||.+|+.++..+..     ..+.++++.-....   
T Consensus       457 ~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~-----~~i~id~se~~~~~---  528 (758)
T PRK11034        457 KMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI-----ELLRFDMSEYMERH---  528 (758)
T ss_pred             cceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCC-----CcEEeechhhcccc---
Confidence            34567778888877777651         12346899999999999999999887632     23344444322111   


Q ss_pred             HHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585           96 GEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY  138 (183)
Q Consensus        96 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~  138 (183)
                       .+.+-++.+ +..........+...+.....-+|+|||++..
T Consensus       529 -~~~~LiG~~-~gyvg~~~~g~L~~~v~~~p~sVlllDEieka  569 (758)
T PRK11034        529 -TVSRLIGAP-PGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA  569 (758)
T ss_pred             -cHHHHcCCC-CCcccccccchHHHHHHhCCCcEEEeccHhhh
Confidence             111112211 11100111112333344455679999999866

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=98.23  E-value=2e-06  Score=70.73  Aligned_cols=103  Identities=16%  Similarity=0.164  Sum_probs=58.3

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCC
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEK  126 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~  126 (183)
                      ..-+.|+|++|+|||+|+..+.+.+........++|++..      ++...+...+...      ......+...+  ..
T Consensus       141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~------~f~~~~~~~l~~~------~~~~~~~~~~~--~~  206 (450)
T PRK14087        141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGD------EFARKAVDILQKT------HKEIEQFKNEI--CQ  206 (450)
T ss_pred             cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHHHh------hhHHHHHHHHh--cc
Confidence            3458999999999999999999977654223345554442      3444554443211      01223344444  34


Q ss_pred             eEEEEEeCCCCccc----ccccCcCCCC-CCCCcEEEEEecC
Q 035585          127 MILVILDNIWKYLD----LETVGIPFGD-DHRGCKLLLTARD  163 (183)
Q Consensus       127 ~~llvlD~~~~~~~----~~~l~~~~~~-~~~~~~iiitsr~  163 (183)
                      .-+|||||++....    .+.+...++. ...+..+|+||..
T Consensus       207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~  248 (450)
T PRK14087        207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDK  248 (450)
T ss_pred             CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCC
Confidence            55899999985531    2223233322 1224467777653

>COG3899 Predicted ATPase [General function prediction only]

Probab=98.23  E-value=1.8e-05  Score=69.77  Aligned_cols=47  Identities=28%  Similarity=0.401  Sum_probs=42.0

Q ss_pred             ccchHHHHHHHHHHhc---cCCccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           28 FKSRLSTLKSIQDALT---DVNVNIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        28 ~~gR~~~l~~l~~~l~---~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      ++||+.+++.|...+.   .....++.|.|.+|+|||++++.+......+
T Consensus         2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~   51 (849)
T COG3899           2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQ   51 (849)
T ss_pred             CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhcc
Confidence            6899999999999887   5566799999999999999999999888765

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=98.23  E-value=6.1e-06  Score=62.82  Aligned_cols=27  Identities=30%  Similarity=0.409  Sum_probs=23.8

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|.|++|+|||||++.++..+.
T Consensus        29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl~~   55 (251)
T PRK09544         29 PGKILTLLGPNGAGKSTLVRVVLGLVA   55 (251)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            457899999999999999999987654

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=98.23  E-value=5.4e-06  Score=64.78  Aligned_cols=27  Identities=26%  Similarity=0.439  Sum_probs=23.4

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +..+++|.|++|+|||||++.+...+.
T Consensus        18 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~~   44 (302)
T TIGR01188        18 EGEVFGFLGPNGAGKTTTIRMLTTLLR   44 (302)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            457899999999999999999987653

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=98.22  E-value=4.8e-06  Score=63.23  Aligned_cols=128  Identities=19%  Similarity=0.239  Sum_probs=65.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhh---ccc--ceEEEEec----CCcCHHHHH--------------HHHHHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEK---LFD--QVVFSEVS----QTPDIKKIH--------------GEIAEKL  102 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~---~~~--~~~~~~~~----~~~~~~~~~--------------~~i~~~l  102 (183)
                      ...+++|+|++|+|||||++.+...+....   .+.  .+.|+.-.    ...+..+..              ..+++.+
T Consensus        24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l  103 (246)
T cd03237          24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPL  103 (246)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHc
Confidence            346899999999999999999988764321   111  12222110    011122211              1122222


Q ss_pred             CCCc------hhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcccccc---cCcCCCCC--CCCcEEEEEecChHHHhhcC
Q 035585          103 GLEF------SEEAESRRASRLYERLKKEKMILVILDNIWKYLDLET---VGIPFGDD--HRGCKLLLTARDCNVLLNMS  171 (183)
Q Consensus       103 ~~~~------~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~~~~---l~~~~~~~--~~~~~iiitsr~~~~~~~~~  171 (183)
                      +...      ...+..+.....+......++-++++||.....+...   +...+...  ..+..+|++||+...+..+.
T Consensus       104 ~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~  183 (246)
T cd03237         104 QIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLA  183 (246)
T ss_pred             CCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence            2210      0011111111222222237889999999875543222   22222211  23667999999998877654


Q ss_pred             CC
Q 035585          172 LC  173 (183)
Q Consensus       172 ~~  173 (183)
                      ..
T Consensus       184 d~  185 (246)
T cd03237         184 DR  185 (246)
T ss_pred             CE
Confidence            43

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=98.22  E-value=4.8e-06  Score=66.02  Aligned_cols=30  Identities=23%  Similarity=0.292  Sum_probs=26.2

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      ..+..++||||+|+|||.+++.++.++...
T Consensus       146 k~PlgllL~GPPGcGKTllAraiA~elg~~  175 (413)
T PLN00020        146 KVPLILGIWGGKGQGKSFQCELVFKKMGIE  175 (413)
T ss_pred             CCCeEEEeeCCCCCCHHHHHHHHHHHcCCC
Confidence            456789999999999999999999987653

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=98.22  E-value=4.5e-06  Score=70.70  Aligned_cols=76  Identities=24%  Similarity=0.239  Sum_probs=53.0

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH-h
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERL-K  123 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~-~  123 (183)
                      ....+++++|++|.||||||.-++.+-.     -.++-+|++...+...+-..|.+.+..              ...+ .
T Consensus       324 P~kKilLL~GppGlGKTTLAHViAkqaG-----YsVvEINASDeRt~~~v~~kI~~avq~--------------~s~l~a  384 (877)
T KOG1969|consen  324 PPKKILLLCGPPGLGKTTLAHVIAKQAG-----YSVVEINASDERTAPMVKEKIENAVQN--------------HSVLDA  384 (877)
T ss_pred             CccceEEeecCCCCChhHHHHHHHHhcC-----ceEEEecccccccHHHHHHHHHHHHhh--------------cccccc
Confidence            4557899999999999999988877522     247788888876665555555433221              1112 2


Q ss_pred             cCCeEEEEEeCCCCcc
Q 035585          124 KEKMILVILDNIWKYL  139 (183)
Q Consensus       124 ~~~~~llvlD~~~~~~  139 (183)
                      ..++..||+||+|...
T Consensus       385 dsrP~CLViDEIDGa~  400 (877)
T KOG1969|consen  385 DSRPVCLVIDEIDGAP  400 (877)
T ss_pred             CCCcceEEEecccCCc
Confidence            3789999999998653

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.21  E-value=2.1e-05  Score=63.20  Aligned_cols=89  Identities=18%  Similarity=0.281  Sum_probs=51.5

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCc-CHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhc
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTP-DIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKK  124 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~  124 (183)
                      +++.++|+|++|+||||++..++..+..+  ...+.++.+.... ...+.+...++.++.+.........+...+..+..
T Consensus       240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~--GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~  317 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK--KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE  317 (436)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHHHHc--CCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence            45789999999999999999999887644  2345566655432 33344445555555443322222222333333432


Q ss_pred             -CCeEEEEEeCCC
Q 035585          125 -EKMILVILDNIW  136 (183)
Q Consensus       125 -~~~~llvlD~~~  136 (183)
                       .+.-+|++|-+.
T Consensus       318 ~~~~DvVLIDTaG  330 (436)
T PRK11889        318 EARVDYILIDTAG  330 (436)
T ss_pred             ccCCCEEEEeCcc
Confidence             234577777654

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=98.21  E-value=3.6e-06  Score=62.67  Aligned_cols=27  Identities=33%  Similarity=0.505  Sum_probs=23.4

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +..+++|+|++|+|||||++.++....
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (220)
T cd03263          27 KGEIFGLLGHNGAGKTTTLKMLTGELR   53 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            456899999999999999999987653

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.21  E-value=6e-06  Score=70.36  Aligned_cols=72  Identities=21%  Similarity=0.316  Sum_probs=50.8

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCC
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEK  126 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~  126 (183)
                      ..-|++|||+|+|||.||++++.+..-.       |+.+... .   ++....         ...++.++.++++.++-.
T Consensus       705 RSGILLYGPPGTGKTLlAKAVATEcsL~-------FlSVKGP-E---LLNMYV---------GqSE~NVR~VFerAR~A~  764 (953)
T KOG0736|consen  705 RSGILLYGPPGTGKTLLAKAVATECSLN-------FLSVKGP-E---LLNMYV---------GQSEENVREVFERARSAA  764 (953)
T ss_pred             cceeEEECCCCCchHHHHHHHHhhceee-------EEeecCH-H---HHHHHh---------cchHHHHHHHHHHhhccC
Confidence            3469999999999999999999875543       3333221 1   111111         123556788899898889


Q ss_pred             eEEEEEeCCCCc
Q 035585          127 MILVILDNIWKY  138 (183)
Q Consensus       127 ~~llvlD~~~~~  138 (183)
                      +-+|.|||+|++
T Consensus       765 PCVIFFDELDSl  776 (953)
T KOG0736|consen  765 PCVIFFDELDSL  776 (953)
T ss_pred             CeEEEecccccc
Confidence            999999999865

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=98.21  E-value=2.4e-06  Score=67.96  Aligned_cols=29  Identities=24%  Similarity=0.245  Sum_probs=25.0

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      +..+|.|+|.+|+||||+++.+...++.+
T Consensus       348 rGelvFliG~NGsGKST~~~LLtGL~~Pq  376 (546)
T COG4615         348 RGELVFLIGGNGSGKSTLAMLLTGLYQPQ  376 (546)
T ss_pred             cCcEEEEECCCCCcHHHHHHHHhcccCCC
Confidence            45689999999999999999998776654

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=98.21  E-value=3.8e-06  Score=62.35  Aligned_cols=27  Identities=26%  Similarity=0.326  Sum_probs=23.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|.|++|+|||||++.++..+.
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   54 (216)
T TIGR00960        28 KGEMVFLVGHSGAGKSTFLKLILGIEK   54 (216)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            457899999999999999999986543

>COG3910 Predicted ATPase [General function prediction only]

Probab=98.21  E-value=5.5e-06  Score=59.59  Aligned_cols=27  Identities=30%  Similarity=0.388  Sum_probs=23.0

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      =+.++..|+|.+|+|||||+..++-..
T Consensus        35 F~apIT~i~GENGsGKSTLLEaiA~~~   61 (233)
T COG3910          35 FRAPITFITGENGSGKSTLLEAIAAGM   61 (233)
T ss_pred             ccCceEEEEcCCCccHHHHHHHHHhhc
Confidence            356899999999999999999997543

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.20  E-value=1.1e-05  Score=61.18  Aligned_cols=26  Identities=31%  Similarity=0.566  Sum_probs=22.9

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +...++|+|++|+|||||++.++...
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (246)
T PRK14269         27 QNKITALIGASGCGKSTFLRCFNRMN   52 (246)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            45789999999999999999998754

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=98.20  E-value=3.6e-06  Score=62.11  Aligned_cols=118  Identities=15%  Similarity=0.084  Sum_probs=58.1

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchh-----HHHHHHHHHHHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSE-----EAESRRASRLYE  120 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~~  120 (183)
                      ..++++|+|++|.||||+++.+....--.. ..  .++.+.  .....++..+...+......     .-..+ ..++..
T Consensus        28 ~~~~~~l~G~n~~GKstll~~i~~~~~la~-~G--~~vpa~--~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e-~~~~~~  101 (204)
T cd03282          28 SSRFHIITGPNMSGKSTYLKQIALLAIMAQ-IG--CFVPAE--YATLPIFNRLLSRLSNDDSMERNLSTFASE-MSETAY  101 (204)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHHH-cC--CCcchh--hcCccChhheeEecCCccccchhhhHHHHH-HHHHHH
Confidence            347899999999999999999864432210 00  011110  00011112222222111000     00011 111222


Q ss_pred             HH-hcCCeEEEEEeCCCCcc---c----ccccCcCCCCCCCCcEEEEEecChHHHhhcC
Q 035585          121 RL-KKEKMILVILDNIWKYL---D----LETVGIPFGDDHRGCKLLLTARDCNVLLNMS  171 (183)
Q Consensus       121 ~~-~~~~~~llvlD~~~~~~---~----~~~l~~~~~~~~~~~~iiitsr~~~~~~~~~  171 (183)
                      .+ ...++-++++||+....   +    ...+...+..  .++.+|++||+.++.....
T Consensus       102 il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~  158 (204)
T cd03282         102 ILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG  158 (204)
T ss_pred             HHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence            12 12678899999985432   1    1112222222  2778999999999987554

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=98.19  E-value=2.3e-06  Score=69.82  Aligned_cols=48  Identities=21%  Similarity=0.243  Sum_probs=31.4

Q ss_pred             CCeEEEEEeCCCCccc----ccccCcCCCCCCCCcEEEEEecChHHHhhcCC
Q 035585          125 EKMILVILDNIWKYLD----LETVGIPFGDDHRGCKLLLTARDCNVLLNMSL  172 (183)
Q Consensus       125 ~~~~llvlD~~~~~~~----~~~l~~~~~~~~~~~~iiitsr~~~~~~~~~~  172 (183)
                      +.+.++|+||...-.+    ..-......-...|+.+|+.+|..+++..+..
T Consensus       489 G~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dk  540 (580)
T COG4618         489 GDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDK  540 (580)
T ss_pred             CCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcce
Confidence            7899999999864322    11112222334568889999999998875443

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=98.19  E-value=1.7e-05  Score=59.69  Aligned_cols=115  Identities=17%  Similarity=0.226  Sum_probs=63.8

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchh-----------------
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSE-----------------  108 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-----------------  108 (183)
                      ...++.|+|++|+|||+|+.++....-..  -..++|+.....  ..++.+++ +.++.....                 
T Consensus        24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~   98 (234)
T PRK06067         24 FPSLILIEGDHGTGKSVLSQQFVYGALKQ--GKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGF   98 (234)
T ss_pred             CCcEEEEECCCCCChHHHHHHHHHHHHhC--CCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccccc
Confidence            45789999999999999999997654332  346788777643  33444433 222211111                 


Q ss_pred             ----HHHHHHHHHHHHHHhcCCeEEEEEeCCCCc---cc---ccccCcCCCC-CCCCcEEEEEecChH
Q 035585          109 ----EAESRRASRLYERLKKEKMILVILDNIWKY---LD---LETVGIPFGD-DHRGCKLLLTARDCN  165 (183)
Q Consensus       109 ----~~~~~~~~~~~~~~~~~~~~llvlD~~~~~---~~---~~~l~~~~~~-~~~~~~iiitsr~~~  165 (183)
                          .........+.+.+.+.+.-++|+|++...   .+   ...+...+.. ...+..+++|++...
T Consensus        99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~  166 (234)
T PRK06067         99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYA  166 (234)
T ss_pred             ccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Confidence                111223344444554457779999997622   11   1111111111 234566888887644

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.19  E-value=1.1e-05  Score=59.91  Aligned_cols=27  Identities=33%  Similarity=0.337  Sum_probs=23.4

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ....++|.|++|+|||||++.+...+.
T Consensus        36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~   62 (214)
T PRK13543         36 AGEALLVQGDNGAGKTTLLRVLAGLLH   62 (214)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence            457899999999999999999987654

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=98.19  E-value=7.1e-06  Score=60.65  Aligned_cols=27  Identities=30%  Similarity=0.404  Sum_probs=23.4

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +..+++|.|++|+|||||++.+.....
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~   51 (210)
T cd03269          25 KGEIFGLLGPNGAGKTTTIRMILGIIL   51 (210)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            457899999999999999999987653

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=5.5e-06  Score=70.08  Aligned_cols=102  Identities=20%  Similarity=0.258  Sum_probs=63.5

Q ss_pred             cccccchHHHHHHHHHHhc------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHH
Q 035585           25 YEAFKSRLSTLKSIQDALT------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEI   98 (183)
Q Consensus        25 ~~~~~gR~~~l~~l~~~l~------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   98 (183)
                      ..+.+|.++.-+++.+++.      +.+..+++++||+|+|||++++.++..+..+ +|    -+.+..-.+..++ +..
T Consensus       410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk-Ff----RfSvGG~tDvAeI-kGH  483 (906)
T KOG2004|consen  410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRK-FF----RFSVGGMTDVAEI-KGH  483 (906)
T ss_pred             cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCc-eE----EEeccccccHHhh-ccc
Confidence            3467888888888888775      4567899999999999999999999988776 21    1222332332221 111


Q ss_pred             HHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585           99 AEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY  138 (183)
Q Consensus        99 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~  138 (183)
                      .+..-...|+     .+-+.+.... ...-+++|||+|..
T Consensus       484 RRTYVGAMPG-----kiIq~LK~v~-t~NPliLiDEvDKl  517 (906)
T KOG2004|consen  484 RRTYVGAMPG-----KIIQCLKKVK-TENPLILIDEVDKL  517 (906)
T ss_pred             ceeeeccCCh-----HHHHHHHhhC-CCCceEEeehhhhh
Confidence            1111122222     2233444444 56678889999855

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=3.3e-06  Score=72.59  Aligned_cols=131  Identities=17%  Similarity=0.194  Sum_probs=74.7

Q ss_pred             CcccccchHHHHHHHHHHhc---------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHH
Q 035585           24 GYEAFKSRLSTLKSIQDALT---------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKI   94 (183)
Q Consensus        24 ~~~~~~gR~~~l~~l~~~l~---------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (183)
                      .....+|-+..+..+.+.+.         +.+...++..||+|+|||-||++++..+...  -...+-+++|      ++
T Consensus       489 L~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~--e~aliR~DMS------Ey  560 (786)
T COG0542         489 LKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGD--EQALIRIDMS------EY  560 (786)
T ss_pred             HhcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCC--CccceeechH------HH
Confidence            34456777888877777664         2344578889999999999999999987643  1222333333      22


Q ss_pred             HHHH-HHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc--ccccccCcCCCC-----------CCCCcEEEEE
Q 035585           95 HGEI-AEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY--LDLETVGIPFGD-----------DHRGCKLLLT  160 (183)
Q Consensus        95 ~~~i-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~--~~~~~l~~~~~~-----------~~~~~~iiit  160 (183)
                      .... .++|-...|+--..+..-.+.+.++.+.-.+|+|||++..  +-++-++..+++           ....+.||.|
T Consensus       561 ~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImT  640 (786)
T COG0542         561 MEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMT  640 (786)
T ss_pred             HHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEe
Confidence            2222 2223222233111112234556666344459999999744  223333343333           2456777777


Q ss_pred             ec
Q 035585          161 AR  162 (183)
Q Consensus       161 sr  162 (183)
                      |.
T Consensus       641 SN  642 (786)
T COG0542         641 SN  642 (786)
T ss_pred             cc
Confidence            76

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=98.19  E-value=2.2e-06  Score=63.97  Aligned_cols=111  Identities=14%  Similarity=0.104  Sum_probs=58.0

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHh-HHhhh-hccc----------ceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFAR-QASEE-KLFD----------QVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESR  113 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~-~~~~~-~~~~----------~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~  113 (183)
                      +.+.++|.|++|.||||+++.+.. .+..+ ..+.          ..++..+....++..-.+.+          ..+..
T Consensus        30 ~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF----------~~e~~   99 (222)
T cd03287          30 GGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTF----------MVELS   99 (222)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchH----------HHHHH
Confidence            457889999999999999999876 33222 0000          11222222222211100011          01111


Q ss_pred             HHHHHHHHHhcCCeEEEEEeCCCCccc-------ccccCcCCCCCCCCcEEEEEecChHHHhh
Q 035585          114 RASRLYERLKKEKMILVILDNIWKYLD-------LETVGIPFGDDHRGCKLLLTARDCNVLLN  169 (183)
Q Consensus       114 ~~~~~~~~~~~~~~~llvlD~~~~~~~-------~~~l~~~~~~~~~~~~iiitsr~~~~~~~  169 (183)
                      .+..+++.  ..++.++++||+....+       ...+...+... .++.+|++||+.++...
T Consensus       100 ~~~~il~~--~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~  159 (222)
T cd03287         100 ETSHILSN--CTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEI  159 (222)
T ss_pred             HHHHHHHh--CCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHH
Confidence            12222222  26799999999743211       11122222222 57889999999998653

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=98.19  E-value=3.8e-05  Score=57.72  Aligned_cols=88  Identities=13%  Similarity=0.175  Sum_probs=49.9

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCch------------------
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFS------------------  107 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~------------------  107 (183)
                      +...++|.|++|+|||||+.+++.....+  -..++|+....  ...++.+.+ ..++....                  
T Consensus        23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~--g~~~~yi~~e~--~~~~~~~~~-~~~g~~~~~~~~~~~l~~~~~~~~~~   97 (230)
T PRK08533         23 AGSLILIEGDESTGKSILSQRLAYGFLQN--GYSVSYVSTQL--TTTEFIKQM-MSLGYDINKKLISGKLLYIPVYPLLS   97 (230)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEEeCCC--CHHHHHHHH-HHhCCchHHHhhcCcEEEEEeccccc
Confidence            34689999999999999988777765433  23466666433  333444444 22222110                  


Q ss_pred             -hHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585          108 -EEAESRRASRLYERLKKEKMILVILDNIWKY  138 (183)
Q Consensus       108 -~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~  138 (183)
                       ..........+.......++-++|+|++...
T Consensus        98 ~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~  129 (230)
T PRK08533         98 GNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSL  129 (230)
T ss_pred             ChHHHHHHHHHHHHHHHhcCCCEEEEECccHH
Confidence             0111222233344433356789999998653

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=98.19  E-value=1.7e-06  Score=64.50  Aligned_cols=134  Identities=17%  Similarity=0.183  Sum_probs=72.0

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhc----ccceEEE-EecCC--cCH---HH--HHHHHH-----------HH-
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKL----FDQVVFS-EVSQT--PDI---KK--IHGEIA-----------EK-  101 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~----~~~~~~~-~~~~~--~~~---~~--~~~~i~-----------~~-  101 (183)
                      +...++|+|.+|+|||||.+.++.-+.+..-    -..+.|+ .....  +.+   +.  +...++           ++ 
T Consensus        52 ~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~~~~eI  131 (249)
T COG1134          52 KGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKVDEI  131 (249)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCccHHHHHHHHHHH
Confidence            3457999999999999999999887765311    1112221 11111  111   00  111111           00 


Q ss_pred             ---------hCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCccc---ccccCcCCCCC-CCCcEEEEEecChHHHh
Q 035585          102 ---------LGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKYLD---LETVGIPFGDD-HRGCKLLLTARDCNVLL  168 (183)
Q Consensus       102 ---------l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~---~~~l~~~~~~~-~~~~~iiitsr~~~~~~  168 (183)
                               +..+...-+.....+..+.....-.+-+|++||+=...+   .......+... .++..++++|||...+.
T Consensus       132 ieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~  211 (249)
T COG1134         132 IEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIK  211 (249)
T ss_pred             HHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHH
Confidence                     011111112222223333333346788999999754433   22222222222 33567999999999999


Q ss_pred             hcCCCCcchhh
Q 035585          169 NMSLCRSEEEE  179 (183)
Q Consensus       169 ~~~~~~~~~~~  179 (183)
                      .+++...+.+.
T Consensus       212 ~~Cd~~i~l~~  222 (249)
T COG1134         212 QYCDRAIWLEH  222 (249)
T ss_pred             HhcCeeEEEeC
Confidence            98887776554

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=98.19  E-value=3.7e-06  Score=61.80  Aligned_cols=25  Identities=28%  Similarity=0.434  Sum_probs=22.7

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      +...++|.|++|+|||||++.+...
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~   49 (200)
T cd03217          25 KGEVHALMGPNGSGKSTLAKTIMGH   49 (200)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4578999999999999999999876

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=98.18  E-value=8.4e-06  Score=62.29  Aligned_cols=27  Identities=33%  Similarity=0.469  Sum_probs=23.6

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|.|++|+|||||++.+...+.
T Consensus        37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~~   63 (257)
T PRK11247         37 AGQFVAVVGRSGCGKSTLLRLLAGLET   63 (257)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            457899999999999999999987654

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=98.18  E-value=1.4e-05  Score=68.23  Aligned_cols=53  Identities=17%  Similarity=0.284  Sum_probs=44.0

Q ss_pred             cCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           21 SNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        21 ~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      .|.....++|+...+..+...+.......++|+|++|+||||+|+.+++....
T Consensus       149 rp~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~  201 (615)
T TIGR02903       149 RPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKK  201 (615)
T ss_pred             CcCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhh
Confidence            35556678899999998888777666778999999999999999999877643

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>PRK08939 primosomal protein DnaI; Reviewed

Probab=98.18  E-value=2.5e-05  Score=61.10  Aligned_cols=89  Identities=19%  Similarity=0.257  Sum_probs=55.8

Q ss_pred             chHHHHHHHHHHhcc----CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCC
Q 035585           30 SRLSTLKSIQDALTD----VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLE  105 (183)
Q Consensus        30 gR~~~l~~l~~~l~~----~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~  105 (183)
                      +|...+.....++.+    .....+.|+|++|+|||.|+.++++.+..+  ...+.|++++      .++..+...+...
T Consensus       135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~--g~~v~~~~~~------~l~~~lk~~~~~~  206 (306)
T PRK08939        135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKK--GVSSTLLHFP------EFIRELKNSISDG  206 (306)
T ss_pred             HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEEEHH------HHHHHHHHHHhcC
Confidence            455555444444431    244679999999999999999999998754  3345665554      3444554433221


Q ss_pred             chhHHHHHHHHHHHHHHhcCCeEEEEEeCCC
Q 035585          106 FSEEAESRRASRLYERLKKEKMILVILDNIW  136 (183)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~  136 (183)
                              .....+..+  .+.-||||||+.
T Consensus       207 --------~~~~~l~~l--~~~dlLiIDDiG  227 (306)
T PRK08939        207 --------SVKEKIDAV--KEAPVLMLDDIG  227 (306)
T ss_pred             --------cHHHHHHHh--cCCCEEEEecCC
Confidence                    112333444  467899999986

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=98.18  E-value=6.6e-06  Score=71.68  Aligned_cols=95  Identities=20%  Similarity=0.245  Sum_probs=59.2

Q ss_pred             CcccccchHHHHHHHHHHhcc-------------CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcC
Q 035585           24 GYEAFKSRLSTLKSIQDALTD-------------VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPD   90 (183)
Q Consensus        24 ~~~~~~gR~~~l~~l~~~l~~-------------~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (183)
                      ...++.|.+..++.+.+++..             ..++.++|+|++|+|||+|++.+++.....     .+.++.+.   
T Consensus       176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~-----~i~i~~~~---  247 (733)
T TIGR01243       176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY-----FISINGPE---  247 (733)
T ss_pred             CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe-----EEEEecHH---
Confidence            344577899888888776531             344679999999999999999998876432     22332211   


Q ss_pred             HHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585           91 IKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY  138 (183)
Q Consensus        91 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~  138 (183)
                         +.    ...    .. .....+..++.......+.+|+|||++..
T Consensus       248 ---i~----~~~----~g-~~~~~l~~lf~~a~~~~p~il~iDEid~l  283 (733)
T TIGR01243       248 ---IM----SKY----YG-ESEERLREIFKEAEENAPSIIFIDEIDAI  283 (733)
T ss_pred             ---Hh----ccc----cc-HHHHHHHHHHHHHHhcCCcEEEeehhhhh
Confidence               11    100    00 11223444555555567789999998754

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=98.18  E-value=1.2e-06  Score=63.55  Aligned_cols=21  Identities=24%  Similarity=0.290  Sum_probs=18.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHHh
Q 035585           49 IVGVYGMGGIGKTTLVKEFAR   69 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~   69 (183)
                      +++|+|++|.||||+++.+.-
T Consensus         1 ~~~ltG~N~~GKst~l~~i~~   21 (185)
T smart00534        1 VVIITGPNMGGKSTYLRQVGL   21 (185)
T ss_pred             CEEEECCCCCcHHHHHHHHHH
Confidence            367999999999999999873

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=98.17  E-value=4.1e-06  Score=65.16  Aligned_cols=28  Identities=39%  Similarity=0.488  Sum_probs=24.1

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      +..++++.|++|+|||||++.+......
T Consensus        30 ~Gei~gllG~NGAGKTTllk~l~gl~~p   57 (293)
T COG1131          30 PGEIFGLLGPNGAGKTTLLKILAGLLKP   57 (293)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCcCC
Confidence            3468999999999999999999876653

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=98.17  E-value=8.6e-06  Score=59.77  Aligned_cols=24  Identities=17%  Similarity=0.410  Sum_probs=20.8

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      .+++|+|++|+|||||++.+....
T Consensus        23 g~~~i~G~nGsGKStll~al~~l~   46 (197)
T cd03278          23 GLTAIVGPNGSGKSNIIDAIRWVL   46 (197)
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHh
Confidence            488999999999999999987543

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=98.17  E-value=1.9e-05  Score=61.17  Aligned_cols=88  Identities=18%  Similarity=0.262  Sum_probs=50.6

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC-cCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhc
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT-PDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKK  124 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~  124 (183)
                      ...+++++|++|+||||++..++..+........+.++.+... ....+.+....+.++.+.........+...+..+. 
T Consensus       193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~-  271 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLR-  271 (282)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHcc-
Confidence            3568999999999999999999988765311124666665543 12233334444444444332222223334444442 


Q ss_pred             CCeEEEEEeCC
Q 035585          125 EKMILVILDNI  135 (183)
Q Consensus       125 ~~~~llvlD~~  135 (183)
                       ..-+|++|.+
T Consensus       272 -~~d~vliDt~  281 (282)
T TIGR03499       272 -DKDLILIDTA  281 (282)
T ss_pred             -CCCEEEEeCC
Confidence             3468888864

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=98.17  E-value=2.6e-05  Score=58.56  Aligned_cols=91  Identities=23%  Similarity=0.303  Sum_probs=53.9

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhc----ccceEEEEecCCcCHHHHHHHHHHHhCCCch-------------h
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKL----FDQVVFSEVSQTPDIKKIHGEIAEKLGLEFS-------------E  108 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~-------------~  108 (183)
                      ...++.|+|++|+|||+|+.+++........    ...++|++.........+ ..++..+.....             .
T Consensus        18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~~   96 (235)
T cd01123          18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFGLDPEEVLDNIYVARAYNS   96 (235)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhccChHhHhcCEEEEecCCH
Confidence            4478999999999999999999865432211    246889888765443332 222222221110             0


Q ss_pred             HHHHHHHHHHHHHHhcC-CeEEEEEeCCCC
Q 035585          109 EAESRRASRLYERLKKE-KMILVILDNIWK  137 (183)
Q Consensus       109 ~~~~~~~~~~~~~~~~~-~~~llvlD~~~~  137 (183)
                      ......+..+...+.+. +.-+||||.+..
T Consensus        97 ~~l~~~l~~l~~~l~~~~~~~liVIDSis~  126 (235)
T cd01123          97 DHQLQLLEELEAILIESSRIKLVIVDSVTA  126 (235)
T ss_pred             HHHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence            11122234444455555 888999999864

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=98.16  E-value=5.9e-06  Score=69.34  Aligned_cols=28  Identities=25%  Similarity=0.283  Sum_probs=24.0

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .+...++|+|++|+|||||++.+...+.
T Consensus       359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~  386 (529)
T TIGR02868       359 PPGERVAILGPSGSGKSTLLMLLTGLLD  386 (529)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4557899999999999999999986554

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>smart00763 AAA_PrkA PrkA AAA domain

Probab=98.16  E-value=4.4e-06  Score=66.15  Aligned_cols=47  Identities=21%  Similarity=0.275  Sum_probs=40.7

Q ss_pred             cccchHHHHHHHHHHhc------cCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           27 AFKSRLSTLKSIQDALT------DVNVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        27 ~~~gR~~~l~~l~~~l~------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      .++|-++.++.+.+++.      ..+.++++|+||+|+||||||+.+++.+..
T Consensus        52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~  104 (361)
T smart00763       52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE  104 (361)
T ss_pred             hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            68899999999998876      234588999999999999999999998866

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.15  E-value=1.3e-05  Score=61.59  Aligned_cols=26  Identities=23%  Similarity=0.488  Sum_probs=22.9

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +...++|.|++|+|||||++.++..+
T Consensus        38 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   63 (269)
T PRK14259         38 RGKVTALIGPSGCGKSTVLRSLNRMN   63 (269)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            45789999999999999999998754

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.15  E-value=1.7e-05  Score=58.39  Aligned_cols=28  Identities=32%  Similarity=0.380  Sum_probs=24.3

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .+...++|.|++|+|||||++.+.....
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   58 (202)
T cd03233          31 KPGEMVLVLGRPGSGCSTLLKALANRTE   58 (202)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence            3457999999999999999999988765

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02012 tigrfam_recA protein RecA

Probab=98.15  E-value=1.6e-05  Score=62.41  Aligned_cols=85  Identities=19%  Similarity=0.267  Sum_probs=52.9

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCC-------chhHHHHHHHHHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLE-------FSEEAESRRASRL  118 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~-------~~~~~~~~~~~~~  118 (183)
                      +.+++.|+|++|+|||||+.+++......  -..++|++.....+..     .+..++..       .+. ........+
T Consensus        54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~-~~eq~l~~~  125 (321)
T TIGR02012        54 RGRIIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPD-TGEQALEIA  125 (321)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCC-CHHHHHHHH
Confidence            44689999999999999999988776543  4457888776544332     23333321       111 122223333


Q ss_pred             HHHHhcCCeEEEEEeCCCCc
Q 035585          119 YERLKKEKMILVILDNIWKY  138 (183)
Q Consensus       119 ~~~~~~~~~~llvlD~~~~~  138 (183)
                      ...++....-+||+|.+..+
T Consensus       126 ~~li~~~~~~lIVIDSv~al  145 (321)
T TIGR02012       126 ETLVRSGAVDIIVVDSVAAL  145 (321)
T ss_pred             HHHhhccCCcEEEEcchhhh
Confidence            33344567889999987643

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=98.15  E-value=8.5e-06  Score=60.34  Aligned_cols=27  Identities=30%  Similarity=0.356  Sum_probs=23.4

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|.|++|+|||||++.++..+.
T Consensus        26 ~G~~~~i~G~nGsGKSTLl~~l~G~~~   52 (214)
T cd03292          26 AGEFVFLVGPSGAGKSTLLKLIYKEEL   52 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            457899999999999999999987653

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=98.14  E-value=1.3e-05  Score=56.88  Aligned_cols=24  Identities=21%  Similarity=0.371  Sum_probs=20.9

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +...|+|++|+|||++++.+.-..
T Consensus        22 ~~~~i~G~NgsGKS~~l~~i~~~~   45 (162)
T cd03227          22 SLTIITGPNGSGKSTILDAIGLAL   45 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            689999999999999999976544

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>PRK05642 DNA replication initiation factor; Validated

Probab=98.14  E-value=2.5e-05  Score=58.88  Aligned_cols=38  Identities=13%  Similarity=0.381  Sum_probs=29.4

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEec
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVS   86 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~   86 (183)
                      ...+.|+|++|+|||.|++.+++....+  ...++|++..
T Consensus        45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~   82 (234)
T PRK05642         45 ESLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLA   82 (234)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHH
Confidence            3678999999999999999998877644  2346676653

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.14  E-value=3.6e-05  Score=62.01  Aligned_cols=90  Identities=17%  Similarity=0.166  Sum_probs=54.9

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhh--cccceEEEEecCC-cCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEK--LFDQVVFSEVSQT-PDIKKIHGEIAEKLGLEFSEEAESRRASRLYERL  122 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~  122 (183)
                      .+.+++++|++|+||||.+..++..+....  ....+..+++... ....+.+...++.++.+.........+...+..+
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~  252 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS  252 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence            457899999999999999999988776421  1234556655543 2334446666776665543322222233333333


Q ss_pred             hcCCeEEEEEeCCCC
Q 035585          123 KKEKMILVILDNIWK  137 (183)
Q Consensus       123 ~~~~~~llvlD~~~~  137 (183)
                        ...-++++|.+..
T Consensus       253 --~~~DlVLIDTaGr  265 (388)
T PRK12723        253 --KDFDLVLVDTIGK  265 (388)
T ss_pred             --CCCCEEEEcCCCC
Confidence              4567888888753

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=98.14  E-value=8e-06  Score=63.96  Aligned_cols=27  Identities=26%  Similarity=0.375  Sum_probs=23.4

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +..+++|.|++|+|||||++.+...+.
T Consensus        32 ~Gei~gllGpNGaGKSTLl~~l~Gl~~   58 (306)
T PRK13537         32 RGECFGLLGPNGAGKTTTLRMLLGLTH   58 (306)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            446899999999999999999987654

>CHL00195 ycf46 Ycf46; Provisional

Probab=98.14  E-value=1.1e-05  Score=66.94  Aligned_cols=73  Identities=16%  Similarity=0.159  Sum_probs=45.8

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcC
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKE  125 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~  125 (183)
                      .++-++++||+|+|||.+|+.+++.+...     .+.++++.          +...    ..+. ....+..++......
T Consensus       258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~-----~~~l~~~~----------l~~~----~vGe-se~~l~~~f~~A~~~  317 (489)
T CHL00195        258 TPRGLLLVGIQGTGKSLTAKAIANDWQLP-----LLRLDVGK----------LFGG----IVGE-SESRMRQMIRIAEAL  317 (489)
T ss_pred             CCceEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEEhHH----------hccc----ccCh-HHHHHHHHHHHHHhc
Confidence            45679999999999999999999876543     12222211          1111    1111 122344555555557


Q ss_pred             CeEEEEEeCCCCc
Q 035585          126 KMILVILDNIWKY  138 (183)
Q Consensus       126 ~~~llvlD~~~~~  138 (183)
                      .+.+|+|||+|..
T Consensus       318 ~P~IL~IDEID~~  330 (489)
T CHL00195        318 SPCILWIDEIDKA  330 (489)
T ss_pred             CCcEEEehhhhhh
Confidence            8999999999854

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=98.14  E-value=1.6e-05  Score=61.09  Aligned_cols=27  Identities=22%  Similarity=0.442  Sum_probs=23.7

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +..+++|.|++|+|||||++.+.....
T Consensus        44 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   70 (267)
T PRK14235         44 EKTVTAFIGPSGCGKSTFLRCLNRMND   70 (267)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence            457899999999999999999987653

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=98.14  E-value=6.7e-06  Score=60.83  Aligned_cols=24  Identities=38%  Similarity=0.614  Sum_probs=21.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           49 IVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .++|.|++|+|||||++.+...+.
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl~~   50 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATLTP   50 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCCCC
Confidence            899999999999999999986543

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli []

Probab=98.13  E-value=5.3e-06  Score=60.97  Aligned_cols=130  Identities=21%  Similarity=0.249  Sum_probs=58.6

Q ss_pred             hHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC--cC-----------HHHHHHH
Q 035585           31 RLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT--PD-----------IKKIHGE   97 (183)
Q Consensus        31 R~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----------~~~~~~~   97 (183)
                      +..+.....+.+.  ...++.+.|+.|+|||.||.....++-....+..+++....-.  ..           ..-.+..
T Consensus         5 ~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p   82 (205)
T PF02562_consen    5 KNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRP   82 (205)
T ss_dssp             -SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHH
T ss_pred             CCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHH
Confidence            4455555555554  3469999999999999999998766544345556655533211  10           1112223


Q ss_pred             HHHHhCCCchhHHHHHHHHH------HHHHHhc--CCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecChH
Q 035585           98 IAEKLGLEFSEEAESRRASR------LYERLKK--EKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDCN  165 (183)
Q Consensus        98 i~~~l~~~~~~~~~~~~~~~------~~~~~~~--~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~~  165 (183)
                      +.+.+..-............      -..+++.  =..-+||+||+++..  ++..+   +.....+|+++++-...+
T Consensus        83 ~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~i---lTR~g~~skii~~GD~~Q  157 (205)
T PF02562_consen   83 IYDALEELFGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMI---LTRIGEGSKIIITGDPSQ  157 (205)
T ss_dssp             HHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHH---HTTB-TT-EEEEEE----
T ss_pred             HHHHHHHHhChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHH---HcccCCCcEEEEecCcee
Confidence            33333222111111111100      0111211  124689999999874  34444   344567899999876543

; GO: 0005524 ATP binding; PDB: 3B85_A.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=98.13  E-value=2e-05  Score=58.68  Aligned_cols=27  Identities=30%  Similarity=0.426  Sum_probs=23.5

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|.|++|+|||||++.+.....
T Consensus        29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~   55 (220)
T cd03293          29 EGEFVALVGPSGCGKSTLLRIIAGLER   55 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            446899999999999999999987654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=98.13  E-value=1.4e-05  Score=65.01  Aligned_cols=76  Identities=22%  Similarity=0.363  Sum_probs=46.4

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCC
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEK  126 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~  126 (183)
                      ...+.|+|++|+|||+|++.+++.+........++|+++.      .+...+...+...        ....+...+.  .
T Consensus       136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~------~~~~~~~~~~~~~--------~~~~~~~~~~--~  199 (405)
T TIGR00362       136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE------KFTNDFVNALRNN--------KMEEFKEKYR--S  199 (405)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH------HHHHHHHHHHHcC--------CHHHHHHHHH--h
Confidence            3568999999999999999999988765222346666432      2333333333211        1122333332  2


Q ss_pred             eEEEEEeCCCCc
Q 035585          127 MILVILDNIWKY  138 (183)
Q Consensus       127 ~~llvlD~~~~~  138 (183)
                      .-+|+|||++..
T Consensus       200 ~dlLiiDDi~~l  211 (405)
T TIGR00362       200 VDLLLIDDIQFL  211 (405)
T ss_pred             CCEEEEehhhhh
Confidence            458999999855

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=98.13  E-value=1.3e-05  Score=59.74  Aligned_cols=27  Identities=30%  Similarity=0.475  Sum_probs=23.5

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|.|++|+|||||++.+...+.
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   51 (223)
T TIGR03740        25 KNSVYGLLGPNGAGKSTLLKMITGILR   51 (223)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            457899999999999999999987653

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.13  E-value=1.4e-05  Score=61.63  Aligned_cols=26  Identities=35%  Similarity=0.581  Sum_probs=22.6

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +...++|.|++|+|||||++.++...
T Consensus        45 ~Ge~~~IiG~nGsGKSTLl~~l~Gl~   70 (274)
T PRK14265         45 AKKIIAFIGPSGCGKSTLLRCFNRMN   70 (274)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            45789999999999999999998543

>PRK14974 cell division protein FtsY; Provisional

Probab=98.13  E-value=4.2e-05  Score=60.50  Aligned_cols=91  Identities=21%  Similarity=0.215  Sum_probs=51.9

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC-cCHHHHHHHHHHHhCCCchhH----HHHHHHHHHHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT-PDIKKIHGEIAEKLGLEFSEE----AESRRASRLYE  120 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~l~~~~~~~----~~~~~~~~~~~  120 (183)
                      ++.+++++|++|+||||++..++..+...  -..+.++..... ....+.+...++.++.+....    ...........
T Consensus       139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~--g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~  216 (336)
T PRK14974        139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN--GFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIE  216 (336)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHH
Confidence            35789999999999999999999877654  223444443322 233445566666666543211    11111122222


Q ss_pred             HHhcCCeEEEEEeCCCCc
Q 035585          121 RLKKEKMILVILDNIWKY  138 (183)
Q Consensus       121 ~~~~~~~~llvlD~~~~~  138 (183)
                      .....+.-+|++|.+...
T Consensus       217 ~~~~~~~DvVLIDTaGr~  234 (336)
T PRK14974        217 HAKARGIDVVLIDTAGRM  234 (336)
T ss_pred             HHHhCCCCEEEEECCCcc
Confidence            222233448889987644

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=98.13  E-value=7e-06  Score=61.65  Aligned_cols=27  Identities=30%  Similarity=0.508  Sum_probs=23.4

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|+|++|+|||||++.++..+.
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~   56 (233)
T cd03258          30 KGEIFGIIGRSGAGKSTLIRCINGLER   56 (233)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            457899999999999999999986553

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.12  E-value=1.8e-05  Score=62.00  Aligned_cols=26  Identities=23%  Similarity=0.479  Sum_probs=23.2

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +...++|+|++|+|||||++.++..+
T Consensus        70 ~Ge~~~IvG~nGsGKSTLl~~L~Gl~   95 (305)
T PRK14264         70 EKSVTALIGPSGCGKSTFLRCLNRMN   95 (305)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            45789999999999999999998765

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.12  E-value=4.3e-06  Score=61.32  Aligned_cols=40  Identities=23%  Similarity=0.372  Sum_probs=27.0

Q ss_pred             cccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHH
Q 035585           27 AFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFA   68 (183)
Q Consensus        27 ~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~   68 (183)
                      -++|-...+..+.--+  ....+.++.||+|+||||+++.+=
T Consensus        15 ~yYg~~~aL~~i~l~i--~~~~VTAlIGPSGcGKST~LR~lN   54 (253)
T COG1117          15 LYYGDKHALKDINLDI--PKNKVTALIGPSGCGKSTLLRCLN   54 (253)
T ss_pred             EEECchhhhccCceec--cCCceEEEECCCCcCHHHHHHHHH
Confidence            3455444444433222  345789999999999999999863

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=98.12  E-value=7.3e-06  Score=64.03  Aligned_cols=27  Identities=33%  Similarity=0.433  Sum_probs=23.2

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +..+++|.|++|+|||||++.+...+.
T Consensus        27 ~Gei~~l~G~NGaGKTTLl~~l~Gl~~   53 (301)
T TIGR03522        27 KGRIVGFLGPNGAGKSTTMKIITGYLP   53 (301)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence            457899999999999999999986543

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=98.12  E-value=4.2e-05  Score=57.17  Aligned_cols=39  Identities=26%  Similarity=0.456  Sum_probs=32.0

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEec
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVS   86 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~   86 (183)
                      ...++.|+|++|+|||+++.+++......  ...++|++..
T Consensus        22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~--~~~v~yi~~e   60 (225)
T PRK09361         22 RGTITQIYGPPGSGKTNICLQLAVEAAKN--GKKVIYIDTE   60 (225)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEECC
Confidence            34689999999999999999998877543  4568888887

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=98.12  E-value=3.5e-06  Score=60.44  Aligned_cols=42  Identities=21%  Similarity=0.232  Sum_probs=32.0

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHh-hhhcccceEEEEecCCcC
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQAS-EEKLFDQVVFSEVSQTPD   90 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~-~~~~~~~~~~~~~~~~~~   90 (183)
                      ..++.++||+|+|||.||+.++..+. ..  ....+.++++.-..
T Consensus         3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~--~~~~~~~d~s~~~~   45 (171)
T PF07724_consen    3 KSNFLLAGPSGVGKTELAKALAELLFVGS--ERPLIRIDMSEYSE   45 (171)
T ss_dssp             SEEEEEESSTTSSHHHHHHHHHHHHT-SS--CCEEEEEEGGGHCS
T ss_pred             EEEEEEECCCCCCHHHHHHHHHHHhccCC--ccchHHHhhhcccc
Confidence            45789999999999999999999887 33  33456667765444

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=98.12  E-value=2.5e-05  Score=57.62  Aligned_cols=26  Identities=31%  Similarity=0.461  Sum_probs=22.8

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +...++|.|++|+|||||++.+....
T Consensus        33 ~G~~~~i~G~nGsGKSTLl~~l~Gl~   58 (207)
T cd03369          33 AGEKIGIVGRTGAGKSTLILALFRFL   58 (207)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            45789999999999999999998654

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=98.12  E-value=2.3e-05  Score=56.56  Aligned_cols=75  Identities=28%  Similarity=0.357  Sum_probs=45.2

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcC
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKE  125 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~  125 (183)
                      ....+.++|++|+|||.||..+.+.+..+  ...+.|++.      .+++..+.....    ...    .......+.  
T Consensus        46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~--g~~v~f~~~------~~L~~~l~~~~~----~~~----~~~~~~~l~--  107 (178)
T PF01695_consen   46 NGENLILYGPPGTGKTHLAVAIANEAIRK--GYSVLFITA------SDLLDELKQSRS----DGS----YEELLKRLK--  107 (178)
T ss_dssp             C--EEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEH------HHHHHHHHCCHC----CTT----HCHHHHHHH--
T ss_pred             cCeEEEEEhhHhHHHHHHHHHHHHHhccC--CcceeEeec------Cceecccccccc----ccc----hhhhcCccc--
Confidence            45789999999999999999999887764  334666543      334444432111    111    123344443  


Q ss_pred             CeEEEEEeCCCCc
Q 035585          126 KMILVILDNIWKY  138 (183)
Q Consensus       126 ~~~llvlD~~~~~  138 (183)
                      +.-+|||||+...
T Consensus       108 ~~dlLilDDlG~~  120 (178)
T PF01695_consen  108 RVDLLILDDLGYE  120 (178)
T ss_dssp             TSSCEEEETCTSS
T ss_pred             cccEeccccccee
Confidence            4578889998643

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.12  E-value=7.5e-06  Score=60.12  Aligned_cols=27  Identities=33%  Similarity=0.404  Sum_probs=23.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|.|++|+|||||++.+.....
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~   52 (200)
T PRK13540         26 AGGLLHLKGSNGAGKTTLLKLIAGLLN   52 (200)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            457899999999999999999986543

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.12  E-value=1.7e-05  Score=58.44  Aligned_cols=27  Identities=33%  Similarity=0.457  Sum_probs=23.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|.|++|+|||||++.++..+.
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~   52 (204)
T PRK13538         26 AGELVQIEGPNGAGKTSLLRILAGLAR   52 (204)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            446899999999999999999987643

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=98.12  E-value=6.3e-06  Score=60.81  Aligned_cols=27  Identities=33%  Similarity=0.378  Sum_probs=23.2

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|.|++|+|||||++.+.....
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~   51 (208)
T cd03268          25 KGEIYGFLGPNGAGKTTTMKIILGLIK   51 (208)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence            457899999999999999999986543

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=98.12  E-value=6.5e-06  Score=60.89  Aligned_cols=27  Identities=30%  Similarity=0.410  Sum_probs=23.6

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|.|++|+|||||++.+...+.
T Consensus        23 ~Ge~~~l~G~nGsGKSTLl~~l~gl~~   49 (211)
T cd03298          23 QGEITAIVGPSGSGKSTLLNLIAGFET   49 (211)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            457899999999999999999987654

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=98.11  E-value=4.1e-05  Score=55.28  Aligned_cols=37  Identities=19%  Similarity=0.246  Sum_probs=28.6

Q ss_pred             EEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC
Q 035585           50 VGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT   88 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~   88 (183)
                      ++|.|++|+|||+|+.+++......  -..++|+.....
T Consensus         2 ~li~G~~G~GKT~l~~~~~~~~~~~--g~~v~~~s~e~~   38 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAGLAR--GEPGLYVTLEES   38 (187)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCCC
Confidence            6899999999999999988876543  345778766543

A related protein is found in archaea.

>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP

Probab=98.11  E-value=3.6e-05  Score=54.35  Aligned_cols=121  Identities=26%  Similarity=0.213  Sum_probs=69.9

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC---cCHHHHHHHHHHHh-----CC------CchhH---H
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT---PDIKKIHGEIAEKL-----GL------EFSEE---A  110 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~l-----~~------~~~~~---~  110 (183)
                      ..+-|++.+|.||||+|...+-+....  -..+.++++-..   ......+..+ ..+     +.      ..+..   .
T Consensus         3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~--g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~   79 (159)
T cd00561           3 GLIQVYTGNGKGKTTAALGLALRALGH--GYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA   79 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence            578899999999999999988777654  334666655443   2223222222 000     00      00111   1


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEEeCCCCc-----ccccccCcCCCCCCCCcEEEEEecChH--HHhhcC
Q 035585          111 ESRRASRLYERLKKEKMILVILDNIWKY-----LDLETVGIPFGDDHRGCKLLLTARDCN--VLLNMS  171 (183)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~llvlD~~~~~-----~~~~~l~~~~~~~~~~~~iiitsr~~~--~~~~~~  171 (183)
                      ...........+..+.--+|||||+-..     ...+.+...+.....+..+|+|.|+..  +++...
T Consensus        80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD  147 (159)
T cd00561          80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD  147 (159)
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence            1112233344444567789999998644     234444555566667888999999654  544443

This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=98.11  E-value=2.6e-06  Score=62.32  Aligned_cols=27  Identities=26%  Similarity=0.449  Sum_probs=23.8

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      .+...++|.|++|+|||||++.++...
T Consensus        33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~   59 (194)
T cd03213          33 KPGELTAIMGPSGAGKSTLLNALAGRR   59 (194)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            345789999999999999999998876

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.11  E-value=6.2e-06  Score=60.21  Aligned_cols=25  Identities=32%  Similarity=0.482  Sum_probs=22.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      +...++|+|++|+|||||++.+...
T Consensus        32 ~Ge~~~l~G~nGsGKSTLl~~l~G~   56 (192)
T cd03232          32 PGTLTALMGESGAGKTTLLDVLAGR   56 (192)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4578999999999999999999864

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=98.10  E-value=2.3e-05  Score=67.32  Aligned_cols=129  Identities=20%  Similarity=0.175  Sum_probs=66.9

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhh---ccc---ceEEEEecC-----CcCHHHHH----------------HHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEK---LFD---QVVFSEVSQ-----TPDIKKIH----------------GEI   98 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~---~~~---~~~~~~~~~-----~~~~~~~~----------------~~i   98 (183)
                      +...++|+|++|+|||||++.++.......   .+.   .+.|+.-..     ..+..+..                ..+
T Consensus       344 ~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~  423 (635)
T PRK11147        344 RGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGY  423 (635)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHH
Confidence            446799999999999999999998754321   111   122321100     01111111                112


Q ss_pred             HHHhCCCch-------hHHHHHHHHHHHHHHhcCCeEEEEEeCCCCccccc---ccCcCCCCCCCCcEEEEEecChHHHh
Q 035585           99 AEKLGLEFS-------EEAESRRASRLYERLKKEKMILVILDNIWKYLDLE---TVGIPFGDDHRGCKLLLTARDCNVLL  168 (183)
Q Consensus        99 ~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~~~---~l~~~~~~~~~~~~iiitsr~~~~~~  168 (183)
                      +..++....       ..+..+.....+......++-+|++||..+..+..   .+...+... .+ .||++|||..++.
T Consensus       424 l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~-~~-tvi~vSHd~~~~~  501 (635)
T PRK11147        424 LQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY-QG-TVLLVSHDRQFVD  501 (635)
T ss_pred             HHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-CC-eEEEEECCHHHHH
Confidence            222222100       01111222222223333788999999998765422   222222222 34 6999999999988


Q ss_pred             hcCCCCcc
Q 035585          169 NMSLCRSE  176 (183)
Q Consensus       169 ~~~~~~~~  176 (183)
                      .+......
T Consensus       502 ~~~d~i~~  509 (635)
T PRK11147        502 NTVTECWI  509 (635)
T ss_pred             HhcCEEEE
Confidence            76654433

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=98.10  E-value=1.3e-05  Score=60.16  Aligned_cols=27  Identities=26%  Similarity=0.431  Sum_probs=23.5

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +..+++|+|++|+|||||++.+.....
T Consensus        10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   36 (230)
T TIGR01184        10 QGEFISLIGHSGCGKSTLLNLISGLAQ   36 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            346899999999999999999987654

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=98.10  E-value=3.2e-05  Score=57.59  Aligned_cols=26  Identities=31%  Similarity=0.445  Sum_probs=22.8

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +..+++|.|++|+|||||++.+....
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   54 (221)
T cd03244          29 PGEKVGIVGRTGSGKSSLLLALFRLV   54 (221)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            45789999999999999999998654

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=98.10  E-value=8.7e-06  Score=68.79  Aligned_cols=28  Identities=36%  Similarity=0.555  Sum_probs=24.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      ....++|+|++|+|||||++.+...+..
T Consensus        32 ~Ge~~~iiG~NGsGKSTLlk~i~G~~~p   59 (556)
T PRK11819         32 PGAKIGVLGLNGAGKSTLLRIMAGVDKE   59 (556)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            4468999999999999999999987643

>TIGR00763 lon ATP-dependent protease La

Probab=98.10  E-value=1.2e-05  Score=70.49  Aligned_cols=47  Identities=23%  Similarity=0.282  Sum_probs=36.5

Q ss_pred             cccchHHHHHHHHHHhc------cCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           27 AFKSRLSTLKSIQDALT------DVNVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        27 ~~~gR~~~l~~l~~~l~------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      .++|.+...+.+.+++.      ..+.+.++++||+|+|||++|+.+++.+..
T Consensus       321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~  373 (775)
T TIGR00763       321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNR  373 (775)
T ss_pred             hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence            46677777777776553      234468999999999999999999998754

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]

Probab=98.10  E-value=2.9e-05  Score=59.64  Aligned_cols=101  Identities=23%  Similarity=0.278  Sum_probs=68.7

Q ss_pred             hhhhhcCCCcccccchHHHHHHHHHHhc-------------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEE
Q 035585           16 EVWLKSNKGYEAFKSRLSTLKSIQDALT-------------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVF   82 (183)
Q Consensus        16 ~~~~~~~~~~~~~~gR~~~l~~l~~~l~-------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~   82 (183)
                      .....|.....+.=|-+.+++.|.+..+             -.++.-|.+||++|+|||.||++++++-...  |     
T Consensus       175 K~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSAT--F-----  247 (440)
T KOG0726|consen  175 KVEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSAT--F-----  247 (440)
T ss_pred             ecccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchh--h-----
Confidence            4455566666777788888888887654             1355679999999999999999999875543  2     


Q ss_pred             EEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCC
Q 035585           83 SEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIW  136 (183)
Q Consensus        83 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~  136 (183)
                              +.-+-..++.......     ...+++++....++-+.++++|+++
T Consensus       248 --------lRvvGseLiQkylGdG-----pklvRqlF~vA~e~apSIvFiDEId  288 (440)
T KOG0726|consen  248 --------LRVVGSELIQKYLGDG-----PKLVRELFRVAEEHAPSIVFIDEID  288 (440)
T ss_pred             --------hhhhhHHHHHHHhccc-----hHHHHHHHHHHHhcCCceEEeehhh
Confidence                    1112233443333322     2345667776667889999999987

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=98.10  E-value=2.2e-05  Score=60.43  Aligned_cols=26  Identities=31%  Similarity=0.457  Sum_probs=22.9

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +...++|.|++|+|||||++.+....
T Consensus        32 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   57 (272)
T PRK15056         32 GGSIAALVGVNGSGKSTLFKALMGFV   57 (272)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45789999999999999999998654

>PRK13409 putative ATPase RIL; Provisional

Probab=98.10  E-value=2.4e-05  Score=66.48  Aligned_cols=126  Identities=21%  Similarity=0.251  Sum_probs=65.8

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhh---ccc-ceEEEEecCC------cCHHHHH-------------HHHHHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEK---LFD-QVVFSEVSQT------PDIKKIH-------------GEIAEKL  102 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~---~~~-~~~~~~~~~~------~~~~~~~-------------~~i~~~l  102 (183)
                      +..+++|.|++|+|||||++.++..+....   .+. .+.|  .++.      .+..+..             ..+++.+
T Consensus       364 ~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y--~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l  441 (590)
T PRK13409        364 EGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISY--KPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPL  441 (590)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEE--ecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHC
Confidence            446899999999999999999997764321   010 1111  1221      1112111             1222222


Q ss_pred             CCCc------hhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcccccc---cCcCCCC--CCCCcEEEEEecChHHHhhcC
Q 035585          103 GLEF------SEEAESRRASRLYERLKKEKMILVILDNIWKYLDLET---VGIPFGD--DHRGCKLLLTARDCNVLLNMS  171 (183)
Q Consensus       103 ~~~~------~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~~~~---l~~~~~~--~~~~~~iiitsr~~~~~~~~~  171 (183)
                      +...      ...+..+.....+......++-++++||.....+...   +...+..  ...+..+|++|||...+..+.
T Consensus       442 ~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~a  521 (590)
T PRK13409        442 QLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYIS  521 (590)
T ss_pred             CCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence            2210      0011112222222233337889999999876644222   2222221  123567999999999887665


Q ss_pred             CC
Q 035585          172 LC  173 (183)
Q Consensus       172 ~~  173 (183)
                      ..
T Consensus       522 Dr  523 (590)
T PRK13409        522 DR  523 (590)
T ss_pred             CE
Confidence            53

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=98.10  E-value=8.2e-06  Score=67.05  Aligned_cols=52  Identities=21%  Similarity=0.156  Sum_probs=39.1

Q ss_pred             CCeEEEEEeCCCCcccccccCc---CCCCCCCCcEEEEEecChHHHhhcCCCCcch
Q 035585          125 EKMILVILDNIWKYLDLETVGI---PFGDDHRGCKLLLTARDCNVLLNMSLCRSEE  177 (183)
Q Consensus       125 ~~~~llvlD~~~~~~~~~~l~~---~~~~~~~~~~iiitsr~~~~~~~~~~~~~~~  177 (183)
                      .++.||+|||..++.+++.+..   .+.....+ .++|++|+..++..++++.+..
T Consensus       238 ~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l  292 (614)
T KOG0927|consen  238 QKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHL  292 (614)
T ss_pred             cCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhhee
Confidence            8899999999998877655522   22233333 6999999999999999877654

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=98.10  E-value=3.5e-05  Score=57.66  Aligned_cols=27  Identities=30%  Similarity=0.453  Sum_probs=23.6

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|.|++|+|||||++.+.....
T Consensus        47 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   73 (224)
T cd03220          47 RGERIGLIGRNGAGKSTLLRLLAGIYP   73 (224)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            457899999999999999999987654

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=98.09  E-value=8.9e-06  Score=60.43  Aligned_cols=27  Identities=30%  Similarity=0.438  Sum_probs=23.4

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|.|++|+|||||++.+.....
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   56 (218)
T cd03266          30 PGEVTGLLGPNGAGKTTTLRMLAGLLE   56 (218)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence            447899999999999999999987653

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.09  E-value=3.8e-05  Score=63.83  Aligned_cols=89  Identities=20%  Similarity=0.291  Sum_probs=47.4

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC-cCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhc
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT-PDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKK  124 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~  124 (183)
                      ...+++|+|++|+||||++..+...+........+.+++.... ....+.+....+.++...........+...+..+  
T Consensus       349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l--  426 (559)
T PRK12727        349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL--  426 (559)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh--
Confidence            4578999999999999999999887655422234555555332 1222333333333333222221122222333333  


Q ss_pred             CCeEEEEEeCCC
Q 035585          125 EKMILVILDNIW  136 (183)
Q Consensus       125 ~~~~llvlD~~~  136 (183)
                      ...-+|+||...
T Consensus       427 ~~~DLVLIDTaG  438 (559)
T PRK12727        427 RDYKLVLIDTAG  438 (559)
T ss_pred             ccCCEEEecCCC
Confidence            234566666653

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=98.09  E-value=3.9e-06  Score=61.66  Aligned_cols=21  Identities=24%  Similarity=0.352  Sum_probs=19.8

Q ss_pred             cEEEEEeCCCCcHHHHHHHHH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFA   68 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~   68 (183)
                      +.++|+|++|+|||||++.+.
T Consensus        29 ~~~~ltG~Ng~GKStll~~i~   49 (200)
T cd03280          29 RVLVITGPNAGGKTVTLKTLG   49 (200)
T ss_pred             eEEEEECCCCCChHHHHHHHH
Confidence            589999999999999999987

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=98.09  E-value=1.9e-05  Score=59.10  Aligned_cols=27  Identities=33%  Similarity=0.402  Sum_probs=23.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ....++|.|++|+|||||++.+.....
T Consensus        28 ~G~~~~i~G~nGsGKSTLl~~l~G~~~   54 (229)
T cd03254          28 PGETVAIVGPTGAGKTTLINLLMRFYD   54 (229)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence            446899999999999999999986653

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=98.09  E-value=2.7e-06  Score=68.56  Aligned_cols=120  Identities=16%  Similarity=0.217  Sum_probs=64.9

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHhhhh------cccceEEEEecCC------cCHHHHH-----------HHHHHHhCC
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQASEEK------LFDQVVFSEVSQT------PDIKKIH-----------GEIAEKLGL  104 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~~------~~~~~~~~~~~~~------~~~~~~~-----------~~i~~~l~~  104 (183)
                      .-|+|+||+|+|||||++.+...+....      +.-.+-|++-...      .+..+.+           +.-+..++.
T Consensus       614 SRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL  693 (807)
T KOG0066|consen  614 SRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGL  693 (807)
T ss_pred             ceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhh
Confidence            3589999999999999999988775431      2223455432111      1111111           111112211


Q ss_pred             Cch-------hHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcccccccCcC--CCCCCCCcEEEEEecChHHHh
Q 035585          105 EFS-------EEAESRRASRLYERLKKEKMILVILDNIWKYLDLETVGIP--FGDDHRGCKLLLTARDCNVLL  168 (183)
Q Consensus       105 ~~~-------~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~~~~l~~~--~~~~~~~~~iiitsr~~~~~~  168 (183)
                      ...       ..+.....+-.+..+....+-+||||+..+-.+++++-..  .-+...|. ||++|||..++.
T Consensus       694 ~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~Gg-Vi~VsHDeRLi~  765 (807)
T KOG0066|consen  694 ASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYNGG-VIMVSHDERLIV  765 (807)
T ss_pred             hhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhccCc-EEEEecccceee
Confidence            100       0111112233344455588999999998866555544221  12344565 888899988764

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=98.09  E-value=5.1e-05  Score=56.62  Aligned_cols=46  Identities=26%  Similarity=0.283  Sum_probs=33.6

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhh----cccceEEEEecCCcCH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEK----LFDQVVFSEVSQTPDI   91 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~----~~~~~~~~~~~~~~~~   91 (183)
                      ...++.|+|++|+|||+|+.+++.......    .-..++|++.......
T Consensus        18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~   67 (226)
T cd01393          18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRP   67 (226)
T ss_pred             CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCH
Confidence            447899999999999999999987654331    0145788887665443

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=98.09  E-value=1.5e-05  Score=58.90  Aligned_cols=27  Identities=26%  Similarity=0.369  Sum_probs=23.4

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|.|++|+|||||++.++..+.
T Consensus        25 ~G~~~~l~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03262          25 KGEVVVIIGPSGSGKSTLLRCINLLEE   51 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            457899999999999999999986553

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=98.09  E-value=2e-05  Score=58.64  Aligned_cols=27  Identities=33%  Similarity=0.316  Sum_probs=23.4

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      .+..+++|.|++|+|||||++.+....
T Consensus        28 ~~G~~~~i~G~nGsGKSTLl~~i~G~~   54 (220)
T cd03245          28 RAGEKVAIIGRVGSGKSTLLKLLAGLY   54 (220)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            345789999999999999999998654

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=98.09  E-value=4e-06  Score=56.31  Aligned_cols=24  Identities=38%  Similarity=0.563  Sum_probs=21.6

Q ss_pred             EEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           49 IVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +++|.|++|+||||+++.+.+++.
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~   24 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLG   24 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHC
Confidence            478999999999999999998763

...

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=98.08  E-value=2.4e-05  Score=61.46  Aligned_cols=88  Identities=17%  Similarity=0.214  Sum_probs=53.0

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHH---HHHhCCCchhHHHHHHHHHHHHHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEI---AEKLGLEFSEEAESRRASRLYERL  122 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~~l~~~~~~~~~~~~~~~~~~~~  122 (183)
                      +.+++.|+|++|+|||||+.+++......  ...++|++.....+.. .+..+   ++.+....+. ...+....+...+
T Consensus        54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~--g~~~vyId~E~~~~~~-~a~~lGvd~~~l~v~~p~-~~eq~l~i~~~li  129 (325)
T cd00983          54 KGRIIEIYGPESSGKTTLALHAIAEAQKL--GGTVAFIDAEHALDPV-YAKKLGVDLDNLLISQPD-TGEQALEIADSLV  129 (325)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEECccccHHHH-HHHHcCCCHHHheecCCC-CHHHHHHHHHHHH
Confidence            45689999999999999999988776543  4457888876654432 11221   1222222222 1222233333334


Q ss_pred             hcCCeEEEEEeCCCC
Q 035585          123 KKEKMILVILDNIWK  137 (183)
Q Consensus       123 ~~~~~~llvlD~~~~  137 (183)
                      ++...-+||+|.+..
T Consensus       130 ~s~~~~lIVIDSvaa  144 (325)
T cd00983         130 RSGAVDLIVVDSVAA  144 (325)
T ss_pred             hccCCCEEEEcchHh
Confidence            556788999998753

RecA couples ATP hydrolysis to DNA strand exchange.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=98.08  E-value=6e-06  Score=61.13  Aligned_cols=27  Identities=30%  Similarity=0.369  Sum_probs=23.5

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|.|++|+|||||++.+...+.
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03301          25 DGEFVVLLGPSGCGKTTTLRMIAGLEE   51 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            456899999999999999999987653

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK10908 cell division protein FtsE; Provisional

Probab=98.08  E-value=1.2e-05  Score=59.91  Aligned_cols=27  Identities=26%  Similarity=0.297  Sum_probs=23.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|.|++|+|||||++.++....
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   53 (222)
T PRK10908         27 PGEMAFLTGHSGAGKSTLLKLICGIER   53 (222)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            457899999999999999999986543

>PRK06921 hypothetical protein; Provisional

Probab=98.08  E-value=3.4e-05  Score=59.22  Aligned_cols=72  Identities=18%  Similarity=0.319  Sum_probs=45.1

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcC
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKE  125 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~  125 (183)
                      ....+.++|++|+|||+|+.++++.+..+ ....++|+..      .+++..+...+          ......+..+  .
T Consensus       116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~-~g~~v~y~~~------~~l~~~l~~~~----------~~~~~~~~~~--~  176 (266)
T PRK06921        116 RKNSIALLGQPGSGKTHLLTAAANELMRK-KGVPVLYFPF------VEGFGDLKDDF----------DLLEAKLNRM--K  176 (266)
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHhhh-cCceEEEEEH------HHHHHHHHHHH----------HHHHHHHHHh--c
Confidence            45789999999999999999999987654 1234566553      22233332211          1112233333  4


Q ss_pred             CeEEEEEeCCC
Q 035585          126 KMILVILDNIW  136 (183)
Q Consensus       126 ~~~llvlD~~~  136 (183)
                      +.-+|||||++
T Consensus       177 ~~dlLiIDDl~  187 (266)
T PRK06921        177 KVEVLFIDDLF  187 (266)
T ss_pred             CCCEEEEeccc
Confidence            56799999994

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=98.08  E-value=1.8e-05  Score=60.52  Aligned_cols=26  Identities=31%  Similarity=0.549  Sum_probs=23.1

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +..+++|+|++|+|||||++.+...+
T Consensus        38 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   63 (260)
T PRK10744         38 KNQVTAFIGPSGCGKSTLLRTFNRMY   63 (260)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            45789999999999999999998765

>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=2e-05  Score=63.02  Aligned_cols=87  Identities=23%  Similarity=0.289  Sum_probs=61.4

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchh--HHHHHHHHHHHHHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSE--EAESRRASRLYERLK  123 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~~~  123 (183)
                      +..+++|-|.||+|||||+.+++.++...  . .++|+.-.....   ..+.-+++++.....  .-.+..++.++..+.
T Consensus        92 ~Gs~iLIgGdPGIGKSTLLLQva~~lA~~--~-~vLYVsGEES~~---QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~  165 (456)
T COG1066          92 PGSVILIGGDPGIGKSTLLLQVAARLAKR--G-KVLYVSGEESLQ---QIKLRADRLGLPTNNLYLLAETNLEDIIAELE  165 (456)
T ss_pred             cccEEEEccCCCCCHHHHHHHHHHHHHhc--C-cEEEEeCCcCHH---HHHHHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence            55789999999999999999999999876  2 678866655433   223445566543322  223334566777777


Q ss_pred             cCCeEEEEEeCCCCc
Q 035585          124 KEKMILVILDNIWKY  138 (183)
Q Consensus       124 ~~~~~llvlD~~~~~  138 (183)
                      +.++-++|+|-++.+
T Consensus       166 ~~~p~lvVIDSIQT~  180 (456)
T COG1066         166 QEKPDLVVIDSIQTL  180 (456)
T ss_pred             hcCCCEEEEecccee
Confidence            789999999998754

>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]

Probab=98.08  E-value=1.8e-05  Score=61.66  Aligned_cols=142  Identities=20%  Similarity=0.155  Sum_probs=82.6

Q ss_pred             CcccccchHHHHHHHHHHhc----cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCc-----CHHHH
Q 035585           24 GYEAFKSRLSTLKSIQDALT----DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTP-----DIKKI   94 (183)
Q Consensus        24 ~~~~~~gR~~~l~~l~~~l~----~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~   94 (183)
                      +...++|-+++...+-.++.    -.....+.++||.|+|||+|......+...  +....+-+.....-     .+..+
T Consensus        22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~--~~E~~l~v~Lng~~~~dk~al~~I   99 (408)
T KOG2228|consen   22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQE--NGENFLLVRLNGELQTDKIALKGI   99 (408)
T ss_pred             CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHh--cCCeEEEEEECccchhhHHHHHHH
Confidence            45568888888888887775    244567899999999999999888877222  23334444444332     34445


Q ss_pred             HHHHHHHhCCCchh-HHHHHHHHHHHHHHhc-----CCeEEEEEeCCCCccc--ccccCcC-----CCCCCCCcEEEEEe
Q 035585           95 HGEIAEKLGLEFSE-EAESRRASRLYERLKK-----EKMILVILDNIWKYLD--LETVGIP-----FGDDHRGCKLLLTA  161 (183)
Q Consensus        95 ~~~i~~~l~~~~~~-~~~~~~~~~~~~~~~~-----~~~~llvlD~~~~~~~--~~~l~~~-----~~~~~~~~~iiits  161 (183)
                      .+++..++...... .+..+.+..++..+..     ..++++|+||+|--..  ...+++.     -....|=|.+-+||
T Consensus       100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt  179 (408)
T KOG2228|consen  100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT  179 (408)
T ss_pred             HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence            55554444322111 2223334444444432     4568999999874321  1111111     12345667888899


Q ss_pred             cChHHH
Q 035585          162 RDCNVL  167 (183)
Q Consensus       162 r~~~~~  167 (183)
                      |-+.+.
T Consensus       180 rld~lE  185 (408)
T KOG2228|consen  180 RLDILE  185 (408)
T ss_pred             cccHHH
Confidence            866543

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=98.07  E-value=2.1e-05  Score=59.44  Aligned_cols=123  Identities=20%  Similarity=0.298  Sum_probs=73.5

Q ss_pred             ccccchHHHH---HHHHHHhcc------CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHH
Q 035585           26 EAFKSRLSTL---KSIQDALTD------VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHG   96 (183)
Q Consensus        26 ~~~~gR~~~l---~~l~~~l~~------~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (183)
                      .+.+|.++..   .-|+++|++      =.++.|+.+||+|+|||.+|++++++.+..  +   +.+.+      .    
T Consensus       121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp--~---l~vka------t----  185 (368)
T COG1223         121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP--L---LLVKA------T----  185 (368)
T ss_pred             hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc--e---EEech------H----
Confidence            3445554443   335566653      256789999999999999999999986653  1   11111      1    


Q ss_pred             HHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc--------------ccccccCcCCC--CCCCCcEEEEE
Q 035585           97 EIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY--------------LDLETVGIPFG--DDHRGCKLLLT  160 (183)
Q Consensus        97 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~--------------~~~~~l~~~~~--~~~~~~~iiit  160 (183)
                      .+   ++..+.  .....+.+++....+--+.++.||++|-.              +.++.|+..++  ....|...|-.
T Consensus       186 ~l---iGehVG--dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaa  260 (368)
T COG1223         186 EL---IGEHVG--DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAA  260 (368)
T ss_pred             HH---HHHHhh--hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEee
Confidence            11   111111  23456677888887788999999998733              11344444443  23446555555


Q ss_pred             ecChHHHh
Q 035585          161 ARDCNVLL  168 (183)
Q Consensus       161 sr~~~~~~  168 (183)
                      |...+++.
T Consensus       261 TN~p~~LD  268 (368)
T COG1223         261 TNRPELLD  268 (368)
T ss_pred             cCChhhcC
Confidence            66555555

>PRK13409 putative ATPase RIL; Provisional

Probab=98.07  E-value=2.1e-05  Score=66.84  Aligned_cols=27  Identities=37%  Similarity=0.553  Sum_probs=23.2

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +..+++|+|++|+|||||++.+...+.
T Consensus        98 ~Gev~gLvG~NGaGKSTLlkiL~G~l~  124 (590)
T PRK13409         98 EGKVTGILGPNGIGKTTAVKILSGELI  124 (590)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence            446899999999999999999987554

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=98.07  E-value=1.7e-05  Score=63.57  Aligned_cols=88  Identities=23%  Similarity=0.326  Sum_probs=54.0

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhH--HHHHHHHHHHHHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEE--AESRRASRLYERLK  123 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~~~  123 (183)
                      +..+++|.|++|+|||||+.+++......  ...++|+......  ..+ ..-+++++......  ........+.+.+.
T Consensus        81 ~GslvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~EEs~--~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~  155 (372)
T cd01121          81 PGSVILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEESP--EQI-KLRADRLGISTENLYLLAETNLEDILASIE  155 (372)
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCcCH--HHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence            34689999999999999999999887654  3457787665332  222 22233444322110  01112344555555


Q ss_pred             cCCeEEEEEeCCCCc
Q 035585          124 KEKMILVILDNIWKY  138 (183)
Q Consensus       124 ~~~~~llvlD~~~~~  138 (183)
                      ..+.-+||||.++.+
T Consensus       156 ~~~~~lVVIDSIq~l  170 (372)
T cd01121         156 ELKPDLVIIDSIQTV  170 (372)
T ss_pred             hcCCcEEEEcchHHh
Confidence            567889999998644

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=98.07  E-value=1.1e-05  Score=59.73  Aligned_cols=26  Identities=31%  Similarity=0.318  Sum_probs=22.9

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +...++|.|++|+|||||++.+...+
T Consensus        27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        27 KGEFLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45789999999999999999998654

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=98.07  E-value=3.2e-05  Score=67.47  Aligned_cols=93  Identities=18%  Similarity=0.263  Sum_probs=55.5

Q ss_pred             ccccchHHHHHHHHHHhc-------------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHH
Q 035585           26 EAFKSRLSTLKSIQDALT-------------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIK   92 (183)
Q Consensus        26 ~~~~gR~~~l~~l~~~l~-------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (183)
                      ..+.|.+...+.|.+.+.             -..+..++++||+|+|||++|+.++......  |   +.+..+      
T Consensus       453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~--f---i~v~~~------  521 (733)
T TIGR01243       453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGAN--F---IAVRGP------  521 (733)
T ss_pred             hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC--E---EEEehH------
Confidence            334565555555555432             1244568999999999999999999876532  1   222211      


Q ss_pred             HHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585           93 KIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY  138 (183)
Q Consensus        93 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~  138 (183)
                          .+....    .+. ....+..++.......+.+|+|||++..
T Consensus       522 ----~l~~~~----vGe-se~~i~~~f~~A~~~~p~iifiDEid~l  558 (733)
T TIGR01243       522 ----EILSKW----VGE-SEKAIREIFRKARQAAPAIIFFDEIDAI  558 (733)
T ss_pred             ----HHhhcc----cCc-HHHHHHHHHHHHHhcCCEEEEEEChhhh
Confidence                111111    111 1234456666666678899999999754

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=98.07  E-value=2.7e-05  Score=58.89  Aligned_cols=27  Identities=30%  Similarity=0.346  Sum_probs=23.2

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +..+++|.|++|+|||||++.++..+.
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   52 (242)
T cd03295          26 KGEFLVLIGPSGSGKTTTMKMINRLIE   52 (242)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            457899999999999999999986543

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=98.07  E-value=9.8e-06  Score=63.45  Aligned_cols=26  Identities=23%  Similarity=0.442  Sum_probs=22.8

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +...++|.|++|+|||||++.+...+
T Consensus        32 ~Ge~v~iiG~nGsGKSTLl~~L~Gl~   57 (305)
T PRK13651         32 QGEFIAIIGQTGSGKTTFIEHLNALL   57 (305)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            45789999999999999999998654

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=98.07  E-value=2.6e-05  Score=59.13  Aligned_cols=26  Identities=27%  Similarity=0.409  Sum_probs=23.0

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +...++|.|++|+|||||++.+....
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (248)
T PRK09580         26 PGEVHAIMGPNGSGKSTLSATLAGRE   51 (248)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCc
Confidence            45789999999999999999998863

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=98.07  E-value=6.1e-06  Score=61.42  Aligned_cols=23  Identities=26%  Similarity=0.319  Sum_probs=20.6

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFAR   69 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~   69 (183)
                      .++++|+|++|+||||+++.+..
T Consensus        30 ~~~~~l~Gpn~sGKstllr~i~~   52 (216)
T cd03284          30 RQILLITGPNMAGKSTYLRQVAL   52 (216)
T ss_pred             ceEEEEECCCCCChHHHHHHHHH
Confidence            37899999999999999999864

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=98.07  E-value=8.7e-06  Score=68.66  Aligned_cols=100  Identities=19%  Similarity=0.269  Sum_probs=55.6

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCe
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKM  127 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  127 (183)
                      ..++|+|++|+|||.|+..+.+..........++|+++.      ++...+...+...        ....+.+.+.  +.
T Consensus       315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitae------ef~~el~~al~~~--------~~~~f~~~y~--~~  378 (617)
T PRK14086        315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSE------EFTNEFINSIRDG--------KGDSFRRRYR--EM  378 (617)
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH------HHHHHHHHHHHhc--------cHHHHHHHhh--cC
Confidence            458999999999999999999987653222345665542      2333333322111        1122333332  35


Q ss_pred             EEEEEeCCCCccc----ccccCcCCCCC-CCCcEEEEEecC
Q 035585          128 ILVILDNIWKYLD----LETVGIPFGDD-HRGCKLLLTARD  163 (183)
Q Consensus       128 ~llvlD~~~~~~~----~~~l~~~~~~~-~~~~~iiitsr~  163 (183)
                      -+|+|||++....    .+.+...++.. ..+..||+||..
T Consensus       379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~  419 (617)
T PRK14086        379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDR  419 (617)
T ss_pred             CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCC
Confidence            6899999985522    12222333221 224557777764

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.07  E-value=1.9e-05  Score=59.98  Aligned_cols=27  Identities=33%  Similarity=0.564  Sum_probs=23.6

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|.|++|+|||||++.+.....
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~   54 (250)
T PRK14247         28 DNTITALMGPSGSGKSTLLRVFNRLIE   54 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            457899999999999999999987654

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=98.07  E-value=2.3e-05  Score=58.92  Aligned_cols=27  Identities=26%  Similarity=0.357  Sum_probs=23.6

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|.|++|+|||||++.+.....
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~~   52 (236)
T cd03253          26 AGKKVAIVGPSGSGKSTILRLLFRFYD   52 (236)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            457899999999999999999987653

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.07  E-value=4.8e-05  Score=57.07  Aligned_cols=30  Identities=30%  Similarity=0.434  Sum_probs=26.6

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      .++.+++|.|++|+|||||++.+...+...
T Consensus        31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~   60 (229)
T PRK09270         31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD   60 (229)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence            566799999999999999999999888764

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=98.07  E-value=2.2e-05  Score=59.28  Aligned_cols=26  Identities=23%  Similarity=0.354  Sum_probs=22.8

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +...++|.|++|+|||||++.+...+
T Consensus        27 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   52 (242)
T TIGR03411        27 PGELRVIIGPNGAGKTTMMDVITGKT   52 (242)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            45789999999999999999998654

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK07261 topology modulation protein; Provisional

Probab=98.07  E-value=1.5e-05  Score=57.17  Aligned_cols=25  Identities=24%  Similarity=0.518  Sum_probs=21.6

Q ss_pred             EEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           49 IVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      -++|+|++|+|||||++.+...+..
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~~~   26 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHYNC   26 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCC
Confidence            4789999999999999999877643

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=98.07  E-value=9.2e-06  Score=60.50  Aligned_cols=27  Identities=33%  Similarity=0.474  Sum_probs=23.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|.|++|+|||||++.++..+.
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~   51 (220)
T cd03265          25 RGEIFGLLGPNGAGKTTTIKMLTTLLK   51 (220)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            457899999999999999999987543

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=98.07  E-value=2.3e-05  Score=58.53  Aligned_cols=27  Identities=30%  Similarity=0.518  Sum_probs=23.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|.|++|+|||||++.+.....
T Consensus         5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~   31 (223)
T TIGR03771         5 KGELLGLLGPNGAGKTTLLRAILGLIP   31 (223)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            347899999999999999999987553

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=98.06  E-value=2.7e-05  Score=58.68  Aligned_cols=28  Identities=29%  Similarity=0.342  Sum_probs=24.1

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .+..+++|.|++|+|||||++.+.....
T Consensus        27 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~   54 (238)
T cd03249          27 PPGKTVALVGSSGCGKSTVVSLLERFYD   54 (238)
T ss_pred             cCCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence            3457999999999999999999987653

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.06  E-value=2.4e-05  Score=60.33  Aligned_cols=27  Identities=22%  Similarity=0.267  Sum_probs=23.5

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|.|++|+|||||++.+...+.
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   56 (274)
T PRK13647         30 EGSKTALLGPNGAGKSTLLLHLNGIYL   56 (274)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            457999999999999999999986553

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=98.06  E-value=3.8e-05  Score=62.26  Aligned_cols=49  Identities=12%  Similarity=0.078  Sum_probs=32.6

Q ss_pred             cCCeEEEEEeCCCCccccc------ccCcCCCCCCCCcEEEEEecChHHHhhcCCCC
Q 035585          124 KEKMILVILDNIWKYLDLE------TVGIPFGDDHRGCKLLLTARDCNVLLNMSLCR  174 (183)
Q Consensus       124 ~~~~~llvlD~~~~~~~~~------~l~~~~~~~~~~~~iiitsr~~~~~~~~~~~~  174 (183)
                      .+++-+|++||.....+..      .++..+.  ..+..||++||+.+.+..+....
T Consensus       155 ~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~--~~g~TIIivsHdl~~~~~~adri  209 (402)
T PRK09536        155 AQATPVLLLDEPTASLDINHQVRTLELVRRLV--DDGKTAVAAIHDLDLAARYCDEL  209 (402)
T ss_pred             HcCCCEEEEECCcccCCHHHHHHHHHHHHHHH--hcCCEEEEEECCHHHHHHhCCEE
Confidence            3788999999987654322      2222222  23667999999999987655543

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=98.06  E-value=8e-06  Score=64.97  Aligned_cols=27  Identities=33%  Similarity=0.496  Sum_probs=23.2

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +..+++|.|++|+|||||++.+...+.
T Consensus        30 ~Gei~~iiG~nGsGKSTLlk~L~Gl~~   56 (343)
T PRK11153         30 AGEIFGVIGASGAGKSTLIRCINLLER   56 (343)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            457899999999999999999986553

>PRK09354 recA recombinase A; Provisional

Probab=98.06  E-value=3.3e-05  Score=61.20  Aligned_cols=89  Identities=17%  Similarity=0.205  Sum_probs=54.2

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHH---HHHhCCCchhHHHHHHHHHHHHHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEI---AEKLGLEFSEEAESRRASRLYERL  122 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~~l~~~~~~~~~~~~~~~~~~~~  122 (183)
                      +.+++.|+|++|+|||||+.+++......  -..++|++.....+.. .+..+   ++.+....+. ........+...+
T Consensus        59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~--G~~~~yId~E~s~~~~-~a~~lGvdld~lli~qp~-~~Eq~l~i~~~li  134 (349)
T PRK09354         59 RGRIVEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-YAKKLGVDIDNLLVSQPD-TGEQALEIADTLV  134 (349)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchHHH-HHHHcCCCHHHeEEecCC-CHHHHHHHHHHHh
Confidence            45689999999999999999988776543  4568888887655432 22222   1222221221 1222233333344


Q ss_pred             hcCCeEEEEEeCCCCc
Q 035585          123 KKEKMILVILDNIWKY  138 (183)
Q Consensus       123 ~~~~~~llvlD~~~~~  138 (183)
                      ++...-+||+|.+..+
T Consensus       135 ~s~~~~lIVIDSvaaL  150 (349)
T PRK09354        135 RSGAVDLIVVDSVAAL  150 (349)
T ss_pred             hcCCCCEEEEeChhhh
Confidence            5567889999987643

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=98.06  E-value=1.8e-05  Score=67.29  Aligned_cols=28  Identities=29%  Similarity=0.371  Sum_probs=23.9

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .+...++|+|++|+|||||++.+...+.
T Consensus       359 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~  386 (588)
T PRK13657        359 KPGQTVAIVGPTGAGKSTLINLLQRVFD  386 (588)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence            3457899999999999999999986654

>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.06  E-value=9e-06  Score=64.47  Aligned_cols=72  Identities=22%  Similarity=0.221  Sum_probs=46.3

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCC
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEK  126 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~  126 (183)
                      =+-|+++||+|+|||.||++++.+-..       -|+|+++..-..            .+.+ ..+..++.+++..+..-
T Consensus       245 WkgvLm~GPPGTGKTlLAKAvATEc~t-------TFFNVSsstltS------------KwRG-eSEKlvRlLFemARfyA  304 (491)
T KOG0738|consen  245 WKGVLMVGPPGTGKTLLAKAVATECGT-------TFFNVSSSTLTS------------KWRG-ESEKLVRLLFEMARFYA  304 (491)
T ss_pred             cceeeeeCCCCCcHHHHHHHHHHhhcC-------eEEEechhhhhh------------hhcc-chHHHHHHHHHHHHHhC
Confidence            346999999999999999999986443       355665532111            1111 12334455666666567


Q ss_pred             eEEEEEeCCCCc
Q 035585          127 MILVILDNIWKY  138 (183)
Q Consensus       127 ~~llvlD~~~~~  138 (183)
                      +..|+|||+|.+
T Consensus       305 PStIFiDEIDsl  316 (491)
T KOG0738|consen  305 PSTIFIDEIDSL  316 (491)
T ss_pred             CceeehhhHHHH
Confidence            888888888755

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.06  E-value=3.4e-05  Score=59.89  Aligned_cols=25  Identities=24%  Similarity=0.515  Sum_probs=22.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      +..+++|+|++|+|||||++.+...
T Consensus        64 ~Ge~~~l~G~nGsGKSTLl~~L~Gl   88 (286)
T PRK14275         64 SKYVTAIIGPSGCGKSTFLRAINRM   88 (286)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            4478999999999999999999874

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.06  E-value=2.5e-05  Score=65.57  Aligned_cols=74  Identities=23%  Similarity=0.354  Sum_probs=50.4

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhc
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKK  124 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~  124 (183)
                      .+++-|+++||||+|||++|+.+++.-...       |+.+..    .+++....   +      ..+..+..++.+.++
T Consensus       466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~n-------Flsvkg----pEL~sk~v---G------eSEr~ir~iF~kAR~  525 (693)
T KOG0730|consen  466 SPPKGVLLYGPPGCGKTLLAKALANEAGMN-------FLSVKG----PELFSKYV---G------ESERAIREVFRKARQ  525 (693)
T ss_pred             CCCceEEEECCCCcchHHHHHHHhhhhcCC-------eeeccC----HHHHHHhc---C------chHHHHHHHHHHHhh
Confidence            577889999999999999999999876544       222222    12222221   1      133455677777777


Q ss_pred             CCeEEEEEeCCCCc
Q 035585          125 EKMILVILDNIWKY  138 (183)
Q Consensus       125 ~~~~llvlD~~~~~  138 (183)
                      -.+-++.|||+|..
T Consensus       526 ~aP~IiFfDEiDsi  539 (693)
T KOG0730|consen  526 VAPCIIFFDEIDAL  539 (693)
T ss_pred             cCCeEEehhhHHhH
Confidence            77899999999854

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.06  E-value=1.4e-05  Score=61.37  Aligned_cols=28  Identities=29%  Similarity=0.521  Sum_probs=24.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      +...++|.|++|+|||||++.++..+..
T Consensus        49 ~Ge~~~liG~NGsGKSTLlk~L~Gl~~p   76 (264)
T PRK13546         49 EGDVIGLVGINGSGKSTLSNIIGGSLSP   76 (264)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence            4568999999999999999999987653

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.06  E-value=8.6e-06  Score=59.57  Aligned_cols=27  Identities=26%  Similarity=0.370  Sum_probs=23.6

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|.|++|+|||||++.++....
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~   51 (195)
T PRK13541         25 PSAITYIKGANGCGKSSLLRMIAGIMQ   51 (195)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            457899999999999999999987654

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.06  E-value=2.2e-05  Score=60.23  Aligned_cols=26  Identities=23%  Similarity=0.487  Sum_probs=22.7

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +...++|.|++|+|||||++.+....
T Consensus        46 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   71 (268)
T PRK14248         46 KHAVTALIGPSGCGKSTFLRSINRMN   71 (268)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            45789999999999999999998743

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=98.06  E-value=8.9e-06  Score=69.05  Aligned_cols=28  Identities=25%  Similarity=0.315  Sum_probs=24.0

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      +...++|+|++|+|||||++.+...+..
T Consensus       368 ~G~~~aIvG~sGsGKSTLl~ll~gl~~p  395 (582)
T PRK11176        368 AGKTVALVGRSGSGKSTIANLLTRFYDI  395 (582)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence            4578999999999999999999876543

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=98.06  E-value=1.3e-05  Score=69.46  Aligned_cols=28  Identities=29%  Similarity=0.243  Sum_probs=23.8

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .+...++|+|++|+|||||++.+...+.
T Consensus       489 ~~G~~iaIvG~sGsGKSTLlklL~gl~~  516 (694)
T TIGR03375       489 RPGEKVAIIGRIGSGKSTLLKLLLGLYQ  516 (694)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3457899999999999999999986654

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK05707 DNA polymerase III subunit delta'; Validated

Probab=98.05  E-value=4.4e-05  Score=60.32  Aligned_cols=114  Identities=14%  Similarity=0.085  Sum_probs=61.0

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhccc--c------eEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFD--Q------VVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASR  117 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~  117 (183)
                      -++.++++|+.|+|||++|+.++..+-......  .      +.++...+.++...+.       ..........+.++.
T Consensus        21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~-------~~~~~~~i~id~iR~   93 (328)
T PRK05707         21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLE-------PEEADKTIKVDQVRE   93 (328)
T ss_pred             cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEe-------ccCCCCCCCHHHHHH
Confidence            356789999999999999999998775321100  0      0000000001100000       000000001122233


Q ss_pred             HHHHHh----cCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecChHH
Q 035585          118 LYERLK----KEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDCNV  166 (183)
Q Consensus       118 ~~~~~~----~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~~~  166 (183)
                      +.+.+.    ..+..++|||+++.+.  ..+.++..+.....++.+|++|++.+.
T Consensus        94 l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~  148 (328)
T PRK05707         94 LVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSR  148 (328)
T ss_pred             HHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhh
Confidence            333322    2556677889999774  566676766666677888888887653

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.05  E-value=1.6e-05  Score=60.03  Aligned_cols=27  Identities=33%  Similarity=0.443  Sum_probs=23.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|.|++|+|||||++.++....
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   54 (241)
T PRK14250         28 GGAIYTIVGPSGAGKSTLIKLINRLID   54 (241)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            457899999999999999999987553

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=98.05  E-value=2.2e-05  Score=64.71  Aligned_cols=76  Identities=20%  Similarity=0.318  Sum_probs=46.7

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCC
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEK  126 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~  126 (183)
                      ...+.|+|++|+|||+|++.+.+.+........++|+++..      +...+...+...        ....+...+.  .
T Consensus       148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~------~~~~~~~~~~~~--------~~~~~~~~~~--~  211 (450)
T PRK00149        148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEK------FTNDFVNALRNN--------TMEEFKEKYR--S  211 (450)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHH------HHHHHHHHHHcC--------cHHHHHHHHh--c
Confidence            35689999999999999999999987652223456655432      223333332211        1123333333  4


Q ss_pred             eEEEEEeCCCCc
Q 035585          127 MILVILDNIWKY  138 (183)
Q Consensus       127 ~~llvlD~~~~~  138 (183)
                      .-+|+|||++..
T Consensus       212 ~dlLiiDDi~~l  223 (450)
T PRK00149        212 VDVLLIDDIQFL  223 (450)
T ss_pred             CCEEEEehhhhh
Confidence            558999999854

>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C

Probab=98.05  E-value=2.3e-05  Score=57.01  Aligned_cols=43  Identities=21%  Similarity=0.315  Sum_probs=30.9

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHhhhh-c-------ccceEEEEecCCc
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQASEEK-L-------FDQVVFSEVSQTP   89 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~-~-------~~~~~~~~~~~~~   89 (183)
                      ..++.|.|++|+|||+++..++..+.... +       -..++|++.....
T Consensus        32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~   82 (193)
T PF13481_consen   32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE   82 (193)
T ss_dssp             TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence            46899999999999999999998876521 1       2358888877663

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=98.05  E-value=2.6e-05  Score=59.91  Aligned_cols=27  Identities=26%  Similarity=0.476  Sum_probs=23.7

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|.|++|+|||||++.++..+.
T Consensus        45 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~   71 (267)
T PRK14237         45 KNKITALIGPSGSGKSTYLRSLNRMND   71 (267)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhccC
Confidence            457899999999999999999987653

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=98.05  E-value=8.1e-06  Score=64.86  Aligned_cols=50  Identities=16%  Similarity=0.242  Sum_probs=32.4

Q ss_pred             CCeEEEEEeCCCCccccc---ccCcCCCC--CCCCcEEEEEecChHHHhhcCCCC
Q 035585          125 EKMILVILDNIWKYLDLE---TVGIPFGD--DHRGCKLLLTARDCNVLLNMSLCR  174 (183)
Q Consensus       125 ~~~~llvlD~~~~~~~~~---~l~~~~~~--~~~~~~iiitsr~~~~~~~~~~~~  174 (183)
                      .++-+|++||+....+..   .+...+..  ...|..||++||+.+++..+....
T Consensus       157 ~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v  211 (343)
T TIGR02314       157 SNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCV  211 (343)
T ss_pred             hCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence            778899999987654321   12222222  123678999999999987765544

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=98.05  E-value=4.4e-05  Score=57.55  Aligned_cols=27  Identities=37%  Similarity=0.464  Sum_probs=23.4

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|.|++|+|||||++.++..+.
T Consensus        46 ~Ge~~~i~G~NGsGKSTLl~~i~Gl~~   72 (236)
T cd03267          46 KGEIVGFIGPNGAGKTTTLKILSGLLQ   72 (236)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence            457899999999999999999987653

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>cd01394 radB RadB

Probab=98.05  E-value=5.3e-05  Score=56.27  Aligned_cols=41  Identities=22%  Similarity=0.372  Sum_probs=32.0

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT   88 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~   88 (183)
                      ...++.|+|++|+|||+|+.+++......  -..++|++....
T Consensus        18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~--g~~v~yi~~e~~   58 (218)
T cd01394          18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYIDTEGL   58 (218)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCCC
Confidence            45789999999999999999998877543  345778766543

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=98.05  E-value=1.4e-05  Score=60.03  Aligned_cols=27  Identities=30%  Similarity=0.379  Sum_probs=23.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|+|++|+|||||++.+.....
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   50 (232)
T PRK10771         24 RGERVAILGPSGAGKSTLLNLIAGFLT   50 (232)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            457899999999999999999986543

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=98.05  E-value=5.4e-05  Score=56.99  Aligned_cols=27  Identities=37%  Similarity=0.484  Sum_probs=23.4

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      .+...++|.|++|+|||||++.+...+
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (237)
T cd03252          26 KPGEVVGIVGRSGSGKSTLTKLIQRFY   52 (237)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            345789999999999999999998655

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins

Probab=98.05  E-value=8.9e-06  Score=65.22  Aligned_cols=99  Identities=23%  Similarity=0.294  Sum_probs=58.9

Q ss_pred             HHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHH--HHHHHHHhCCCchhHH
Q 035585           33 STLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKI--HGEIAEKLGLEFSEEA  110 (183)
Q Consensus        33 ~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~l~~~~~~~~  110 (183)
                      ..++.+.+.+....+..+.|.|++|+|||+|.+.+...++..   ...+.+.++.+.+...+  -..+++.+..+.....
T Consensus         8 ~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~---~~~~~~~a~tg~AA~~i~~G~T~hs~f~i~~~~~~   84 (364)
T PF05970_consen    8 RVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSR---GKKVLVTAPTGIAAFNIPGGRTIHSFFGIPINNNE   84 (364)
T ss_pred             HHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccc---cceEEEecchHHHHHhccCCcchHHhcCccccccc
Confidence            344555555556677899999999999999999999887663   22344455554443333  3455555554433321


Q ss_pred             HHH----HHHHHHHHHhcCCeEEEEEeCCC
Q 035585          111 ESR----RASRLYERLKKEKMILVILDNIW  136 (183)
Q Consensus       111 ~~~----~~~~~~~~~~~~~~~llvlD~~~  136 (183)
                      ...    ....+...+  ..--+||+||+.
T Consensus        85 ~~~~~~~~~~~~~~~l--~~~~~lIiDEis  112 (364)
T PF05970_consen   85 KSQCKISKNSRLRERL--RKADVLIIDEIS  112 (364)
T ss_pred             cccccccccchhhhhh--hhheeeeccccc
Confidence            111    111122222  455699999985

The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.05  E-value=1.2e-05  Score=62.18  Aligned_cols=27  Identities=30%  Similarity=0.458  Sum_probs=23.4

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +..+++|+|++|+|||||++.+...+.
T Consensus        29 ~Ge~~~i~G~NGsGKSTLl~~l~Gl~~   55 (277)
T PRK13652         29 RNSRIAVIGPNGAGKSTLFRHFNGILK   55 (277)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            457899999999999999999986553

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.04  E-value=3.7e-05  Score=58.69  Aligned_cols=26  Identities=23%  Similarity=0.488  Sum_probs=22.8

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +...++|.|++|+|||||++.+....
T Consensus        37 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~   62 (258)
T PRK14268         37 KNSVTALIGPSGCGKSTFIRCLNRMN   62 (258)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            44689999999999999999998654

>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=98.04  E-value=3.1e-05  Score=57.76  Aligned_cols=49  Identities=20%  Similarity=0.295  Sum_probs=37.8

Q ss_pred             ccccchHHHHHHHHHH----hccCCccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           26 EAFKSRLSTLKSIQDA----LTDVNVNIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        26 ~~~~gR~~~l~~l~~~----l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      ..++|-+...+.|...    +...+...|++||-.|+|||+|++++.+.+..+
T Consensus        60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~  112 (287)
T COG2607          60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE  112 (287)
T ss_pred             HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc
Confidence            3456666666556543    335667789999999999999999999998876

>PRK05541 adenylylsulfate kinase; Provisional

Probab=98.04  E-value=4.9e-05  Score=54.57  Aligned_cols=37  Identities=24%  Similarity=0.461  Sum_probs=29.1

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEE
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFS   83 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~   83 (183)
                      .++.++.+.|++|+||||+++.+...+...  +..+.++
T Consensus         5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~--~~~~~~~   41 (176)
T PRK05541          5 PNGYVIWITGLAGSGKTTIAKALYERLKLK--YSNVIYL   41 (176)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEE
Confidence            345689999999999999999999988754  3344444

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=1.6e-05  Score=68.14  Aligned_cols=96  Identities=22%  Similarity=0.176  Sum_probs=62.7

Q ss_pred             CCcccccchHHHHHHHHHHhcc---------CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHH
Q 035585           23 KGYEAFKSRLSTLKSIQDALTD---------VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKK   93 (183)
Q Consensus        23 ~~~~~~~gR~~~l~~l~~~l~~---------~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (183)
                      .+..+...-.+|+..+.++|.+         .-++-++|+||+|+|||.||++++.+-..       -|+.++...-.  
T Consensus       311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgV-------PF~svSGSEFv--  381 (774)
T KOG0731|consen  311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFSVSGSEFV--  381 (774)
T ss_pred             ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCC-------ceeeechHHHH--
Confidence            4455555566777777777764         24466999999999999999999986443       34445443111  


Q ss_pred             HHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585           94 IHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY  138 (183)
Q Consensus        94 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~  138 (183)
                        ..    +...     ....++.++...+..-+.++.+|++|..
T Consensus       382 --E~----~~g~-----~asrvr~lf~~ar~~aP~iifideida~  415 (774)
T KOG0731|consen  382 --EM----FVGV-----GASRVRDLFPLARKNAPSIIFIDEIDAV  415 (774)
T ss_pred             --HH----hccc-----chHHHHHHHHHhhccCCeEEEecccccc
Confidence              11    1111     1233466777777788999999998743

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=98.04  E-value=1.9e-05  Score=65.94  Aligned_cols=51  Identities=18%  Similarity=0.196  Sum_probs=32.5

Q ss_pred             CCeEEEEEeCCCCccccccc---CcCCCC-CCCCcEEEEEecChHHHhhcCCCCc
Q 035585          125 EKMILVILDNIWKYLDLETV---GIPFGD-DHRGCKLLLTARDCNVLLNMSLCRS  175 (183)
Q Consensus       125 ~~~~llvlD~~~~~~~~~~l---~~~~~~-~~~~~~iiitsr~~~~~~~~~~~~~  175 (183)
                      .++-+|++||.....+....   ...+.. ...|..||++|||.+.+..+.....
T Consensus       413 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~  467 (501)
T PRK11288        413 EDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIV  467 (501)
T ss_pred             cCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEE
Confidence            67889999998766442222   111111 1236679999999998876655433

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.04  E-value=1.7e-05  Score=61.65  Aligned_cols=27  Identities=26%  Similarity=0.405  Sum_probs=23.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +..+++|.|++|+|||||++.+...+.
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   58 (290)
T PRK13634         32 SGSYVAIIGHTGSGKSTLLQHLNGLLQ   58 (290)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            447899999999999999999986543

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=98.04  E-value=1.4e-05  Score=63.50  Aligned_cols=27  Identities=26%  Similarity=0.425  Sum_probs=23.6

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ...+++|.|++|+|||||++.+...+.
T Consensus        66 ~Gei~gLlGpNGaGKSTLl~~L~Gl~~   92 (340)
T PRK13536         66 SGECFGLLGPNGAGKSTIARMILGMTS   92 (340)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence            457899999999999999999987654

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.04  E-value=3.7e-05  Score=55.07  Aligned_cols=37  Identities=22%  Similarity=0.365  Sum_probs=28.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585           49 IVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ   87 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~   87 (183)
                      ++.++|++|+||||++..++..+...  -..+.++++..
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~~--g~~v~~i~~D~   38 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKKK--GKKVLLVAADT   38 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHC--CCcEEEEEcCC
Confidence            57889999999999999999887764  23455666553

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=98.04  E-value=1.6e-05  Score=61.08  Aligned_cols=27  Identities=30%  Similarity=0.410  Sum_probs=23.6

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|+|++|+|||||++.+...+.
T Consensus        38 ~Ge~~~i~G~NGsGKSTLl~~l~Gl~~   64 (267)
T PRK15112         38 EGQTLAIIGENGSGKSTLAKMLAGMIE   64 (267)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence            457899999999999999999987654

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.03  E-value=3.1e-05  Score=59.11  Aligned_cols=26  Identities=23%  Similarity=0.455  Sum_probs=23.0

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +...++|.|++|+|||||++.+....
T Consensus        37 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   62 (259)
T PRK14274         37 ENEVTAIIGPSGCGKSTFIKTLNLMI   62 (259)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            45689999999999999999998755

>PLN03073 ABC transporter F family; Provisional

Probab=98.03  E-value=2.3e-05  Score=67.94  Aligned_cols=126  Identities=14%  Similarity=0.169  Sum_probs=66.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhh---ccc---ceEEEEecC--CcCH----------------HHHHHHHHHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEK---LFD---QVVFSEVSQ--TPDI----------------KKIHGEIAEK  101 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~---~~~---~~~~~~~~~--~~~~----------------~~~~~~i~~~  101 (183)
                      +...++|+|++|+|||||++.+...+....   .+.   .+.|+.-..  ....                ..-...++..
T Consensus       534 ~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~  613 (718)
T PLN03073        534 LDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGS  613 (718)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHHHHHHH
Confidence            345899999999999999999997664321   000   122211000  0000                0111223333


Q ss_pred             hCCCc-------hhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCccccc---ccCcCCCCCCCCcEEEEEecChHHHhhcC
Q 035585          102 LGLEF-------SEEAESRRASRLYERLKKEKMILVILDNIWKYLDLE---TVGIPFGDDHRGCKLLLTARDCNVLLNMS  171 (183)
Q Consensus       102 l~~~~-------~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~~~---~l~~~~~~~~~~~~iiitsr~~~~~~~~~  171 (183)
                      ++...       ...+..+.....+......++-+|++||..+..+..   .+...+... .+ .||++||+..++..+.
T Consensus       614 ~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~g-tvIivSHd~~~i~~~~  691 (718)
T PLN03073        614 FGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF-QG-GVLMVSHDEHLISGSV  691 (718)
T ss_pred             CCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-CC-EEEEEECCHHHHHHhC
Confidence            33321       001222222222333333789999999998665422   222222222 35 6999999999988765


Q ss_pred             CC
Q 035585          172 LC  173 (183)
Q Consensus       172 ~~  173 (183)
                      ..
T Consensus       692 dr  693 (718)
T PLN03073        692 DE  693 (718)
T ss_pred             CE
Confidence            54

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=98.03  E-value=1.6e-05  Score=60.22  Aligned_cols=27  Identities=26%  Similarity=0.522  Sum_probs=23.5

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +..+++|.|++|+|||||++.+...+.
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   52 (247)
T TIGR00972        26 KNQVTALIGPSGCGKSTLLRSLNRMND   52 (247)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            457899999999999999999986653

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=98.03  E-value=4.6e-05  Score=58.15  Aligned_cols=28  Identities=32%  Similarity=0.506  Sum_probs=24.1

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .+...++|+|++|+|||||++.+...++
T Consensus        24 ~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~   51 (255)
T cd03236          24 REGQVLGLVGPNGIGKSTALKILAGKLK   51 (255)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence            3457999999999999999999987664

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=98.03  E-value=2.7e-05  Score=65.45  Aligned_cols=126  Identities=13%  Similarity=0.259  Sum_probs=64.6

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhh---ccc---ceEEEEec------CCcCHHHH-------------HHHHHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEK---LFD---QVVFSEVS------QTPDIKKI-------------HGEIAE  100 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~---~~~---~~~~~~~~------~~~~~~~~-------------~~~i~~  100 (183)
                      +...++|.|++|+|||||++.++..+....   .+.   .+.|+.-.      ......+.             ...+++
T Consensus       344 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~  423 (530)
T PRK15064        344 AGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLG  423 (530)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHH
Confidence            446899999999999999999987654321   111   12222110      00111111             122233


Q ss_pred             HhCCCc-------hhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcccc---cccCcCCCCCCCCcEEEEEecChHHHhhc
Q 035585          101 KLGLEF-------SEEAESRRASRLYERLKKEKMILVILDNIWKYLDL---ETVGIPFGDDHRGCKLLLTARDCNVLLNM  170 (183)
Q Consensus       101 ~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~~---~~l~~~~~~~~~~~~iiitsr~~~~~~~~  170 (183)
                      .++...       ...+..+.....+......++-+|++||..+..+.   ..+...+... .+ .||++||+.+.+..+
T Consensus       424 ~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~-tvi~vsHd~~~~~~~  501 (530)
T PRK15064        424 RLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY-EG-TLIFVSHDREFVSSL  501 (530)
T ss_pred             HcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC-CC-EEEEEeCCHHHHHHh
Confidence            332210       00111122222222222378889999998765432   1222222222 34 699999999988766


Q ss_pred             CCC
Q 035585          171 SLC  173 (183)
Q Consensus       171 ~~~  173 (183)
                      ...
T Consensus       502 ~d~  504 (530)
T PRK15064        502 ATR  504 (530)
T ss_pred             CCE
Confidence            543

>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H

Probab=98.03  E-value=2.4e-06  Score=59.05  Aligned_cols=44  Identities=18%  Similarity=0.329  Sum_probs=29.6

Q ss_pred             chHHHHHHHHHHhc--cCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           30 SRLSTLKSIQDALT--DVNVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        30 gR~~~l~~l~~~l~--~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      |+-..+..+.+.+.  .....-|+|+|++|+||+++|+.++..-..
T Consensus         2 G~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~   47 (138)
T PF14532_consen    2 GKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGR   47 (138)
T ss_dssp             -SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTT
T ss_pred             CCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCc
Confidence            34445555555444  234467899999999999999998876543

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.03  E-value=1.9e-05  Score=59.37  Aligned_cols=28  Identities=29%  Similarity=0.275  Sum_probs=23.2

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      ....++|+|++|+|||||++.+.--+..
T Consensus        29 ~Ge~~~i~G~nGsGKSTL~~~l~GLl~p   56 (235)
T COG1122          29 KGERVLLIGPNGSGKSTLLKLLNGLLKP   56 (235)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCcCcC
Confidence            3468999999999999999998765543

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=98.03  E-value=1.2e-05  Score=61.31  Aligned_cols=27  Identities=19%  Similarity=0.388  Sum_probs=23.5

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|+|++|+|||||++.+.....
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~   56 (257)
T PRK10619         30 AGDVISIIGSSGSGKSTFLRCINFLEK   56 (257)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            457899999999999999999987653

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=98.03  E-value=2.8e-05  Score=67.61  Aligned_cols=28  Identities=29%  Similarity=0.246  Sum_probs=23.8

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .+...++|+|++|+|||||++.+...+.
T Consensus       503 ~~Ge~vaIvG~sGsGKSTLlklL~gl~~  530 (710)
T TIGR03796       503 QPGQRVALVGGSGSGKSTIAKLVAGLYQ  530 (710)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3457899999999999999999986654

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=98.03  E-value=2.2e-05  Score=60.36  Aligned_cols=27  Identities=30%  Similarity=0.486  Sum_probs=23.4

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +..+++|.|++|+|||||++.++..+.
T Consensus        49 ~Ge~~~l~G~nGsGKSTLl~~L~Gl~~   75 (269)
T cd03294          49 EGEIFVIMGLSGSGKSTLLRCINRLIE   75 (269)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            457899999999999999999987653

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=98.02  E-value=5e-05  Score=66.06  Aligned_cols=29  Identities=21%  Similarity=0.258  Sum_probs=24.6

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      .+...++|+|++|+|||||++.+...+..
T Consensus       505 ~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p  533 (711)
T TIGR00958       505 HPGEVVALVGPSGSGKSTVAALLQNLYQP  533 (711)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence            35578999999999999999999876643

>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.02  E-value=4.5e-05  Score=57.94  Aligned_cols=88  Identities=20%  Similarity=0.278  Sum_probs=58.4

Q ss_pred             cchHHHHHHHHHHhc-------------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHH
Q 035585           29 KSRLSTLKSIQDALT-------------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIH   95 (183)
Q Consensus        29 ~gR~~~l~~l~~~l~-------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (183)
                      =|=+++++.|.+..+             =+++.-++++||+|+|||.+|++++++-...       |+.+-.        
T Consensus       180 ggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdac-------firvig--------  244 (435)
T KOG0729|consen  180 GGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDAC-------FIRVIG--------  244 (435)
T ss_pred             cchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCce-------EEeehh--------
Confidence            345666777766543             2466779999999999999999999874432       333222        


Q ss_pred             HHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCC
Q 035585           96 GEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIW  136 (183)
Q Consensus        96 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~  136 (183)
                      +.+.....     .....+++++++..+..+..+++||+++
T Consensus       245 selvqkyv-----gegarmvrelf~martkkaciiffdeid  280 (435)
T KOG0729|consen  245 SELVQKYV-----GEGARMVRELFEMARTKKACIIFFDEID  280 (435)
T ss_pred             HHHHHHHh-----hhhHHHHHHHHHHhcccceEEEEeeccc
Confidence            12222111     1234567788888887888999999987

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.02  E-value=4.7e-05  Score=60.88  Aligned_cols=90  Identities=18%  Similarity=0.234  Sum_probs=56.4

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC-cCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHh-
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT-PDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLK-  123 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-  123 (183)
                      +.++++++|++|+||||++..++..+..+  ...+.++++... ....+.+...++.++.+.........+...+..+. 
T Consensus       205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~--g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~  282 (407)
T PRK12726        205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQ--NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY  282 (407)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence            45789999999999999999998876544  234667776544 33455666777766654332222222333344443 


Q ss_pred             cCCeEEEEEeCCCC
Q 035585          124 KEKMILVILDNIWK  137 (183)
Q Consensus       124 ~~~~~llvlD~~~~  137 (183)
                      .+..-+|++|-+..
T Consensus       283 ~~~~D~VLIDTAGr  296 (407)
T PRK12726        283 VNCVDHILIDTVGR  296 (407)
T ss_pred             cCCCCEEEEECCCC
Confidence            24457888887643

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=98.02  E-value=6e-05  Score=55.45  Aligned_cols=29  Identities=21%  Similarity=0.362  Sum_probs=24.7

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      .+...++|.|++|+|||||++.+......
T Consensus        29 ~~G~~~~i~G~nG~GKSTLl~~i~G~~~~   57 (204)
T cd03250          29 PKGELVAIVGPVGSGKSSLLSALLGELEK   57 (204)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCcCCC
Confidence            34578999999999999999999887654

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=98.02  E-value=8.8e-05  Score=59.43  Aligned_cols=89  Identities=16%  Similarity=0.196  Sum_probs=56.2

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC-cCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhc
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT-PDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKK  124 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~  124 (183)
                      +.+++.++||+|+||||-...++.++.-..--..+.++...+- ....+.+...++.++.+..-......+......+. 
T Consensus       202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~-  280 (407)
T COG1419         202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALR-  280 (407)
T ss_pred             cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhh-
Confidence            4789999999999999666666665552111334666666543 34556667777777777665444444555555553 


Q ss_pred             CCeEEEEEeCCC
Q 035585          125 EKMILVILDNIW  136 (183)
Q Consensus       125 ~~~~llvlD~~~  136 (183)
                       ..-+|++|=+.
T Consensus       281 -~~d~ILVDTaG  291 (407)
T COG1419         281 -DCDVILVDTAG  291 (407)
T ss_pred             -cCCEEEEeCCC
Confidence             33566677553

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=98.02  E-value=0.00011  Score=60.05  Aligned_cols=87  Identities=23%  Similarity=0.295  Sum_probs=53.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC-cCHHHHHHHHHHHhCCCchhH----HHHHHHHHHHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT-PDIKKIHGEIAEKLGLEFSEE----AESRRASRLYE  120 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~l~~~~~~~----~~~~~~~~~~~  120 (183)
                      ++.++.++|++|+||||++..++..+....  ..+..+.+... +...+.+..+++.++.+....    ...........
T Consensus        94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g--~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~  171 (437)
T PRK00771         94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKG--LKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE  171 (437)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHHcC--CeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence            467899999999999999999998887642  23555555432 234555666777765543221    11222233333


Q ss_pred             HHhcCCeEEEEEeCCC
Q 035585          121 RLKKEKMILVILDNIW  136 (183)
Q Consensus       121 ~~~~~~~~llvlD~~~  136 (183)
                      ... . .-+||+|.+-
T Consensus       172 ~~~-~-~DvVIIDTAG  185 (437)
T PRK00771        172 KFK-K-ADVIIVDTAG  185 (437)
T ss_pred             Hhh-c-CCEEEEECCC
Confidence            333 2 3678888874

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.02  E-value=1.9e-05  Score=61.38  Aligned_cols=27  Identities=22%  Similarity=0.293  Sum_probs=23.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +..+++|.|++|+|||||++.+...+.
T Consensus        36 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   62 (289)
T PRK13645         36 KNKVTCVIGTTGSGKSTMIQLTNGLII   62 (289)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            447899999999999999999986653

>PRK06696 uridine kinase; Validated

Probab=98.02  E-value=1.2e-05  Score=60.21  Aligned_cols=44  Identities=25%  Similarity=0.334  Sum_probs=35.9

Q ss_pred             chHHHHHHHHHHhc---cCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           30 SRLSTLKSIQDALT---DVNVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        30 gR~~~l~~l~~~l~---~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      .|.+.++.|.+.+.   ..++.+|+|.|++|+||||||+.+...+..
T Consensus         2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~   48 (223)
T PRK06696          2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK   48 (223)
T ss_pred             cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            36677777777664   456789999999999999999999998864

>PRK06871 DNA polymerase III subunit delta'; Validated

Probab=98.02  E-value=7.2e-05  Score=58.93  Aligned_cols=125  Identities=11%  Similarity=0.143  Sum_probs=70.5

Q ss_pred             HHHHHHHHHhccCC-ccEEEEEeCCCCcHHHHHHHHHhHHhhhhccc--c------eEEEEecCCcCHHHHHHHHHHHhC
Q 035585           33 STLKSIQDALTDVN-VNIVGVYGMGGIGKTTLVKEFARQASEEKLFD--Q------VVFSEVSQTPDIKKIHGEIAEKLG  103 (183)
Q Consensus        33 ~~l~~l~~~l~~~~-~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~i~~~l~  103 (183)
                      .....|.+.+.+++ ++.++++|+.|+||+++|+.++..+-......  .      +..+.....+++..+.       .
T Consensus         9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~-------p   81 (325)
T PRK06871          9 PTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILE-------P   81 (325)
T ss_pred             HHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEc-------c
Confidence            44556666666544 46788999999999999999998775421110  0      0000111111111000       0


Q ss_pred             CCchhHHHHHHHHHHHHHH----hcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecChH
Q 035585          104 LEFSEEAESRRASRLYERL----KKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDCN  165 (183)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~----~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~~  165 (183)
                      .... ....+.++.+.+.+    .+++..++|||+++.+.  ..+.++..+....+++.+|++|.+.+
T Consensus        82 ~~~~-~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~  148 (325)
T PRK06871         82 IDNK-DIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSA  148 (325)
T ss_pred             ccCC-CCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChH
Confidence            0000 00112223333322    23677899999999874  56677777777777888888887654

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=98.02  E-value=1.9e-05  Score=61.81  Aligned_cols=27  Identities=26%  Similarity=0.412  Sum_probs=23.4

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|.|++|+|||||++.+.....
T Consensus        29 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~~   55 (303)
T TIGR01288        29 RGECFGLLGPNGAGKSTIARMLLGMIS   55 (303)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            457899999999999999999987553

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.02  E-value=3.7e-05  Score=58.49  Aligned_cols=26  Identities=23%  Similarity=0.508  Sum_probs=23.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +...++|+|++|+|||||++.++..+
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   54 (252)
T PRK14256         29 ENSVTAIIGPSGCGKSTVLRSINRMH   54 (252)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            45789999999999999999998765

>PLN03073 ABC transporter F family; Provisional

Probab=98.02  E-value=1.4e-05  Score=69.23  Aligned_cols=49  Identities=16%  Similarity=0.030  Sum_probs=32.2

Q ss_pred             CCeEEEEEeCCCCccccccc---CcCCCCCCCCcEEEEEecChHHHhhcCCCCc
Q 035585          125 EKMILVILDNIWKYLDLETV---GIPFGDDHRGCKLLLTARDCNVLLNMSLCRS  175 (183)
Q Consensus       125 ~~~~llvlD~~~~~~~~~~l---~~~~~~~~~~~~iiitsr~~~~~~~~~~~~~  175 (183)
                      .++-+|+|||..+..+....   ...+...  +..+|++||+..++..+.+...
T Consensus       361 ~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~d~i~  412 (718)
T PLN03073        361 IEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVVTDIL  412 (718)
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEE
Confidence            67789999999876542222   2222221  4569999999999887655433

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=98.02  E-value=2.4e-05  Score=66.31  Aligned_cols=28  Identities=32%  Similarity=0.353  Sum_probs=23.9

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .+...++|+|++|+|||||++.+...+.
T Consensus       356 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~  383 (571)
T TIGR02203       356 EPGETVALVGRSGSGKSTLVNLIPRFYE  383 (571)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence            3557899999999999999999986654

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=98.02  E-value=2.9e-05  Score=59.06  Aligned_cols=27  Identities=22%  Similarity=0.346  Sum_probs=23.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|.|++|+|||||++.+...+.
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   51 (252)
T TIGR03005        25 AGEKVALIGPSGSGKSTILRILMTLEP   51 (252)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            457899999999999999999986553

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.02  E-value=2.4e-05  Score=57.95  Aligned_cols=56  Identities=20%  Similarity=0.176  Sum_probs=37.0

Q ss_pred             HHHHHHHhcCCeEEEEEeCCCCcccccccCcC---CC-CCCCCcEEEEEecChHHHhhcCC
Q 035585          116 SRLYERLKKEKMILVILDNIWKYLDLETVGIP---FG-DDHRGCKLLLTARDCNVLLNMSL  172 (183)
Q Consensus       116 ~~~~~~~~~~~~~llvlD~~~~~~~~~~l~~~---~~-~~~~~~~iiitsr~~~~~~~~~~  172 (183)
                      .++++.+. -++-+.||||.|+..+++.+...   +. -..+++.+++.||-..++.-+..
T Consensus       153 ~EilQ~~~-lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~p  212 (251)
T COG0396         153 NEILQLLL-LEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKP  212 (251)
T ss_pred             HHHHHHHh-cCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCC
Confidence            34444444 67889999999988766555211   11 12346678899999888887653

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=98.02  E-value=1.9e-05  Score=60.29  Aligned_cols=26  Identities=31%  Similarity=0.567  Sum_probs=23.0

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +...++|.|++|+|||||++.++..+
T Consensus        31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   56 (258)
T PRK11701         31 PGEVLGIVGESGSGKTTLLNALSARL   56 (258)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45789999999999999999998754

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.02  E-value=2.2e-05  Score=60.94  Aligned_cols=27  Identities=22%  Similarity=0.358  Sum_probs=23.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|.|++|+|||||++.++..+.
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~L~Gl~~   58 (286)
T PRK13646         32 QGKYYAIVGQTGSGKSTLIQNINALLK   58 (286)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            447899999999999999999986553

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.01  E-value=4.2e-05  Score=58.10  Aligned_cols=27  Identities=30%  Similarity=0.550  Sum_probs=23.6

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|.|++|+|||||++.+.....
T Consensus        29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~   55 (251)
T PRK14249         29 ERQITAIIGPSGCGKSTLLRALNRMND   55 (251)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            457899999999999999999987654

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=98.01  E-value=1.5e-05  Score=57.37  Aligned_cols=29  Identities=28%  Similarity=0.370  Sum_probs=24.5

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      ....+.|.|++|+|||||.+.++..++..
T Consensus        27 ~Ge~~~i~G~NG~GKTtLLRilaGLl~p~   55 (209)
T COG4133          27 AGEALQITGPNGAGKTTLLRILAGLLRPD   55 (209)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHcccCCC
Confidence            34678999999999999999998776653

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.01  E-value=2.6e-05  Score=58.17  Aligned_cols=29  Identities=24%  Similarity=0.330  Sum_probs=24.2

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      .+..+++|.|++|+|||||++.+...++.
T Consensus        32 ~~Gei~~iiGgSGsGKStlLr~I~Gll~P   60 (263)
T COG1127          32 PRGEILAILGGSGSGKSTLLRLILGLLRP   60 (263)
T ss_pred             cCCcEEEEECCCCcCHHHHHHHHhccCCC
Confidence            35578999999999999999999865543

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=98.01  E-value=3.9e-05  Score=56.95  Aligned_cols=27  Identities=26%  Similarity=0.378  Sum_probs=23.6

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|.|++|+|||||++.++....
T Consensus        12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~   38 (213)
T PRK15177         12 YHEHIGILAAPGSGKTTLTRLLCGLDA   38 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence            347899999999999999999987654

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=98.01  E-value=3.7e-05  Score=56.74  Aligned_cols=45  Identities=16%  Similarity=0.234  Sum_probs=29.3

Q ss_pred             CCeEEEEEeCCCCccc---cc-ccCcCCCCC-CC-CcEEEEEecChHHHhh
Q 035585          125 EKMILVILDNIWKYLD---LE-TVGIPFGDD-HR-GCKLLLTARDCNVLLN  169 (183)
Q Consensus       125 ~~~~llvlD~~~~~~~---~~-~l~~~~~~~-~~-~~~iiitsr~~~~~~~  169 (183)
                      .++-++++||+....+   .. .+...+... .. +..+|++||+.++...
T Consensus       138 ~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~  188 (204)
T cd03240         138 SNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA  188 (204)
T ss_pred             cCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh
Confidence            7889999999875543   22 333333222 22 5579999999887754

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.01  E-value=1.9e-05  Score=61.01  Aligned_cols=26  Identities=19%  Similarity=0.299  Sum_probs=22.8

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +..+++|.|++|+|||||++.++..+
T Consensus        32 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~   57 (280)
T PRK13649         32 DGSYTAFIGHTGSGKSTIMQLLNGLH   57 (280)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            44689999999999999999998654

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=98.01  E-value=2.8e-05  Score=58.42  Aligned_cols=28  Identities=29%  Similarity=0.379  Sum_probs=24.2

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      +...++|.|++|+|||||++.++.....
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~g~~~~   52 (232)
T cd03300          25 EGEFFTLLGPSGCGKTTLLRLIAGFETP   52 (232)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            4578999999999999999999877643

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=98.01  E-value=3.8e-05  Score=64.28  Aligned_cols=26  Identities=31%  Similarity=0.392  Sum_probs=22.9

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +..+++|+|++|+|||||++.+...+
T Consensus        36 ~Ge~~~liG~NGsGKSTLl~~l~Gl~   61 (510)
T PRK15439         36 AGEVHALLGGNGAGKSTLMKIIAGIV   61 (510)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44789999999999999999998655

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.01  E-value=2.5e-05  Score=61.76  Aligned_cols=27  Identities=19%  Similarity=0.433  Sum_probs=23.4

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|+|++|+|||||++.++....
T Consensus       107 ~Ge~v~IvG~~GsGKSTLl~~L~g~~~  133 (329)
T PRK14257        107 RNKVTAFIGPSGCGKSTFLRNLNQLND  133 (329)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccc
Confidence            346899999999999999999987653

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=98.01  E-value=3.7e-05  Score=60.85  Aligned_cols=27  Identities=26%  Similarity=0.414  Sum_probs=23.6

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +..+++|+|++|+|||||++.+.....
T Consensus        32 ~Ge~~~ivG~sGsGKSTLl~~i~Gl~~   58 (330)
T PRK15093         32 EGEIRGLVGESGSGKSLIAKAICGVTK   58 (330)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHccCC
Confidence            457899999999999999999987653

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=98.00  E-value=2e-05  Score=57.95  Aligned_cols=27  Identities=33%  Similarity=0.398  Sum_probs=23.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|.|++|+|||||++.+...+.
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   51 (201)
T cd03231          25 AGEALQVTGPNGSGKTTLLRILAGLSP   51 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            457899999999999999999986553

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=98.00  E-value=2.6e-05  Score=65.94  Aligned_cols=28  Identities=36%  Similarity=0.555  Sum_probs=24.1

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      +...++|+|++|+|||||++.++.....
T Consensus        30 ~Ge~~~liG~NGsGKSTLl~~i~G~~~p   57 (552)
T TIGR03719        30 PGAKIGVLGLNGAGKSTLLRIMAGVDKE   57 (552)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            4468999999999999999999977643

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.00  E-value=1.7e-05  Score=61.55  Aligned_cols=26  Identities=23%  Similarity=0.356  Sum_probs=22.9

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +...++|.|++|+|||||++.+...+
T Consensus        31 ~Ge~v~i~G~nGsGKSTLl~~l~Gl~   56 (288)
T PRK13643         31 KGSYTALIGHTGSGKSTLLQHLNGLL   56 (288)
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCC
Confidence            45789999999999999999998654

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.00  E-value=3.6e-05  Score=59.71  Aligned_cols=27  Identities=22%  Similarity=0.444  Sum_probs=23.4

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|.|++|+|||||++.+...+.
T Consensus        64 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~   90 (285)
T PRK14254         64 ENQVTAMIGPSGCGKSTFLRCINRMND   90 (285)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            457899999999999999999986643

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.00  E-value=1.7e-05  Score=60.95  Aligned_cols=27  Identities=26%  Similarity=0.418  Sum_probs=23.1

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|+|++|+|||||++.+...+.
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   52 (271)
T PRK13638         26 LSPVTGLVGANGCGKSTLFMNLSGLLR   52 (271)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence            447899999999999999999986543

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=98.00  E-value=3.4e-05  Score=58.76  Aligned_cols=28  Identities=14%  Similarity=0.137  Sum_probs=24.0

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .+...++|.|++|+|||||++.+.....
T Consensus        27 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   54 (254)
T PRK10418         27 QRGRVLALVGGSGSGKSLTCAAALGILP   54 (254)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3457899999999999999999987654

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=98.00  E-value=5e-05  Score=56.81  Aligned_cols=25  Identities=28%  Similarity=0.349  Sum_probs=21.2

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      .....|+|++|+|||||++.+...+
T Consensus        57 ge~W~I~G~NGsGKTTLL~ll~~~~   81 (257)
T COG1119          57 GEHWAIVGPNGAGKTTLLSLLTGEH   81 (257)
T ss_pred             CCcEEEECCCCCCHHHHHHHHhccc
Confidence            3568899999999999999997544

>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51

Probab=98.00  E-value=0.00019  Score=54.78  Aligned_cols=90  Identities=28%  Similarity=0.368  Sum_probs=54.7

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHhhh----hcccceEEEEecCCcCHHHHHHHHHHHhCCCchh-------------H
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQASEE----KLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSE-------------E  109 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-------------~  109 (183)
                      ..++=|+|++|+|||.|+.+++-...-.    ..-..++|++.........+. +|++.+......             .
T Consensus        38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~  116 (256)
T PF08423_consen   38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLE  116 (256)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHH
T ss_pred             CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHH
Confidence            3678899999999999999887543221    113358999988877665543 455555432111             0


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 035585          110 AESRRASRLYERLKKEKMILVILDNIWK  137 (183)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~llvlD~~~~  137 (183)
                      .-...+..+...+.+.+--|||+|.+-.
T Consensus       117 ~l~~~L~~l~~~l~~~~ikLIVIDSIaa  144 (256)
T PF08423_consen  117 ELLELLEQLPKLLSESKIKLIVIDSIAA  144 (256)
T ss_dssp             HHHHHHHHHHHHHHHSCEEEEEEETSSH
T ss_pred             HHHHHHHHHHhhccccceEEEEecchHH
Confidence            1111223333444457788999998753

It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.00  E-value=3.8e-05  Score=58.38  Aligned_cols=27  Identities=30%  Similarity=0.560  Sum_probs=23.5

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|.|++|+|||||++.+...+.
T Consensus        29 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~   55 (253)
T PRK14267         29 QNGVFALMGPSGCGKSTLLRTFNRLLE   55 (253)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            457899999999999999999987654

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=98.00  E-value=4.2e-05  Score=58.86  Aligned_cols=28  Identities=25%  Similarity=0.470  Sum_probs=24.2

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .+...++|+|++|+|||||++.+...+.
T Consensus        48 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~   75 (271)
T PRK14238         48 HENEVTAIIGPSGCGKSTYIKTLNRMVE   75 (271)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence            3457899999999999999999987654

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=98.00  E-value=0.00011  Score=56.25  Aligned_cols=40  Identities=23%  Similarity=0.460  Sum_probs=31.4

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ   87 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~   87 (183)
                      +..++.|+|++|+|||+|+.+++.....+  -..++|+....
T Consensus        35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis~Ee   74 (259)
T TIGR03878        35 AYSVINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVTVES   74 (259)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecC
Confidence            45689999999999999999987765443  34677877764

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.99  E-value=2.3e-05  Score=53.99  Aligned_cols=41  Identities=29%  Similarity=0.323  Sum_probs=31.0

Q ss_pred             EEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHH
Q 035585           50 VGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIH   95 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (183)
                      |.|+|++|+|||+|++.+++.+..     .+..++++...+..++.
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~~~-----~~~~i~~~~~~~~~dl~   42 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALLGR-----PVIRINCSSDTTEEDLI   42 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHHTC-----EEEEEE-TTTSTHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhhc-----ceEEEEeccccccccce
Confidence            789999999999999999998732     34556777776665544

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.99  E-value=4.3e-05  Score=57.98  Aligned_cols=27  Identities=26%  Similarity=0.471  Sum_probs=23.4

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +..+++|.|++|+|||||++.+.....
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   54 (249)
T PRK14253         28 ARQVTALIGPSGCGKSTLLRCLNRMND   54 (249)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence            457899999999999999999987654

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=97.99  E-value=6.3e-05  Score=54.88  Aligned_cols=31  Identities=32%  Similarity=0.448  Sum_probs=26.4

Q ss_pred             cCCccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           44 DVNVNIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        44 ~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      .....+++|.|++|.||||+.+.++..+...
T Consensus        25 ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~   55 (245)
T COG4555          25 AEEGEITGLLGENGAGKTTLLRMIATLLIPD   55 (245)
T ss_pred             eccceEEEEEcCCCCCchhHHHHHHHhccCC
Confidence            3456899999999999999999999877653

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=3.2e-05  Score=65.62  Aligned_cols=78  Identities=19%  Similarity=0.183  Sum_probs=50.7

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhc
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKK  124 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~  124 (183)
                      .+.+.+.|.|+.|+|||+|++.++..+.. +..-++-+++|+......  +..+             ......++.....
T Consensus       429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k-~~~~hv~~v~Cs~l~~~~--~e~i-------------Qk~l~~vfse~~~  492 (952)
T KOG0735|consen  429 FRHGNILLNGPKGSGKTNLVKALFDYYSK-DLIAHVEIVSCSTLDGSS--LEKI-------------QKFLNNVFSEALW  492 (952)
T ss_pred             cccccEEEeCCCCCCHhHHHHHHHHHhcc-ccceEEEEEechhccchh--HHHH-------------HHHHHHHHHHHHh
Confidence            35578999999999999999999999884 344456666666432211  1111             1122333333444


Q ss_pred             CCeEEEEEeCCCCc
Q 035585          125 EKMILVILDNIWKY  138 (183)
Q Consensus       125 ~~~~llvlD~~~~~  138 (183)
                      ..+-++||||+|-+
T Consensus       493 ~~PSiIvLDdld~l  506 (952)
T KOG0735|consen  493 YAPSIIVLDDLDCL  506 (952)
T ss_pred             hCCcEEEEcchhhh
Confidence            78999999998743

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=97.99  E-value=2.3e-05  Score=58.75  Aligned_cols=27  Identities=33%  Similarity=0.489  Sum_probs=23.4

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|+|++|+|||||++.+...+.
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~   51 (230)
T TIGR03410        25 KGEVTCVLGRNGVGKTTLLKTLMGLLP   51 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            457899999999999999999986553

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.98  E-value=4.9e-05  Score=57.71  Aligned_cols=26  Identities=35%  Similarity=0.563  Sum_probs=22.7

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +...++|.|++|+|||||++.+....
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~   53 (250)
T PRK14262         28 KNQITAIIGPSGCGKTTLLRSINRMN   53 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            45789999999999999999998644

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=97.98  E-value=3.7e-05  Score=64.62  Aligned_cols=28  Identities=25%  Similarity=0.274  Sum_probs=23.8

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .+...++|+|++|+|||||++.+...+.
T Consensus       346 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~  373 (529)
T TIGR02857       346 PPGERVALVGPSGAGKSTLLNLLLGFVD  373 (529)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3557899999999999999999986554

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.98  E-value=3.3e-05  Score=59.98  Aligned_cols=27  Identities=30%  Similarity=0.468  Sum_probs=23.2

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|.|++|+|||||++.++..+.
T Consensus        32 ~Ge~~~iiG~NGaGKSTLl~~l~Gl~~   58 (287)
T PRK13641         32 EGSFVALVGHTGSGKSTLMQHFNALLK   58 (287)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            447899999999999999999986543

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.98  E-value=1.9e-05  Score=61.10  Aligned_cols=27  Identities=22%  Similarity=0.304  Sum_probs=23.5

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +..+++|+|++|+|||||++.++..+.
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   58 (279)
T PRK13650         32 QGEWLSIIGHNGSGKSTTVRLIDGLLE   58 (279)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            457899999999999999999987653

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.98  E-value=3.4e-05  Score=58.75  Aligned_cols=27  Identities=26%  Similarity=0.507  Sum_probs=23.6

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|.|++|+|||||++.+...+.
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   58 (254)
T PRK14273         32 KNSITALIGPSGCGKSTFLRTLNRMND   58 (254)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccc
Confidence            457899999999999999999987654

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=97.98  E-value=3.8e-05  Score=58.31  Aligned_cols=26  Identities=23%  Similarity=0.507  Sum_probs=22.7

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +...++|.|++|+|||||++.+....
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   53 (250)
T PRK14240         28 ENQVTALIGPSGCGKSTFLRTLNRMN   53 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            45789999999999999999998643

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=97.97  E-value=2.6e-05  Score=57.97  Aligned_cols=48  Identities=13%  Similarity=0.194  Sum_probs=28.4

Q ss_pred             CCeEEEEEeCCCCccc---ccccCcCCCCCCCCcEEEEEecChHHHhhcCC
Q 035585          125 EKMILVILDNIWKYLD---LETVGIPFGDDHRGCKLLLTARDCNVLLNMSL  172 (183)
Q Consensus       125 ~~~~llvlD~~~~~~~---~~~l~~~~~~~~~~~~iiitsr~~~~~~~~~~  172 (183)
                      ...-+++|||++...+   ...+...+......+.+|+||++..+......
T Consensus       157 ~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~  207 (220)
T PF02463_consen  157 KPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADK  207 (220)
T ss_dssp             S--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4566899999985533   22333333344456899999999999886543

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.97  E-value=5.7e-05  Score=57.47  Aligned_cols=25  Identities=32%  Similarity=0.579  Sum_probs=22.1

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      +...++|.|++|+|||||++.+...
T Consensus        31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   55 (253)
T PRK14261         31 KNRVTALIGPSGCGKSTLLRCFNRM   55 (253)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcc
Confidence            4568999999999999999999854

>PRK08769 DNA polymerase III subunit delta'; Validated

Probab=97.97  E-value=9.2e-05  Score=58.22  Aligned_cols=132  Identities=14%  Similarity=0.131  Sum_probs=68.9

Q ss_pred             HHHHHHHHHhccCCc-cEEEEEeCCCCcHHHHHHHHHhHHhhhhcccc-----eEEEEecCCcCHHHHHHHHHHHhCCCc
Q 035585           33 STLKSIQDALTDVNV-NIVGVYGMGGIGKTTLVKEFARQASEEKLFDQ-----VVFSEVSQTPDIKKIHGEIAEKLGLEF  106 (183)
Q Consensus        33 ~~l~~l~~~l~~~~~-~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~l~~~~  106 (183)
                      ...+.|...+.+++. +.++++|+.|+||+++|..++..+-.......     +-++...+.+++..+.. .-+.-+...
T Consensus        11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~-~p~~~~~k~   89 (319)
T PRK08769         11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSF-IPNRTGDKL   89 (319)
T ss_pred             HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEec-CCCcccccc
Confidence            445666776665544 46999999999999999999887643311100     00000000000000000 000000000


Q ss_pred             hhHHHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecChH
Q 035585          107 SEEAESRRASRLYERLK----KEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDCN  165 (183)
Q Consensus       107 ~~~~~~~~~~~~~~~~~----~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~~  165 (183)
                      ......+.++.+.+.+.    .++..++|||+++.+.  ..+.++..+.....++.+|++|++.+
T Consensus        90 ~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~  154 (319)
T PRK08769         90 RTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPA  154 (319)
T ss_pred             cccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChh
Confidence            00011223333433332    2567899999999774  46666676666667888888887544

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=97.97  E-value=2.9e-05  Score=57.71  Aligned_cols=66  Identities=21%  Similarity=0.228  Sum_probs=40.1

Q ss_pred             HHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHh-----hhhcccceEEEEecCCcCHHHHHHHHHH
Q 035585           33 STLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQAS-----EEKLFDQVVFSEVSQTPDIKKIHGEIAE  100 (183)
Q Consensus        33 ~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~  100 (183)
                      .+.+.+..++.+.  .+.+|+||+|+|||+++..+...+-     ........+.+...++.+...+...+..
T Consensus         5 ~Q~~Ai~~~~~~~--~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~   75 (236)
T PF13086_consen    5 SQREAIQSALSSN--GITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK   75 (236)
T ss_dssp             HHHHHHHHHCTSS--E-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCC--CCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence            3445555555433  2789999999999988888877762     1112334555566666666666666655

>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional

Probab=97.97  E-value=2.1e-05  Score=68.13  Aligned_cols=63  Identities=13%  Similarity=0.192  Sum_probs=45.9

Q ss_pred             CcccccchHHHHHHHHHHhc--cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC
Q 035585           24 GYEAFKSRLSTLKSIQDALT--DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT   88 (183)
Q Consensus        24 ~~~~~~gR~~~l~~l~~~l~--~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~   88 (183)
                      ....++|+...+..+.+.+.  ......|+|+|++|+|||++|+.++..-...  ....+.++|...
T Consensus       374 ~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~--~~~~v~i~c~~~  438 (686)
T PRK15429        374 EFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRN--NRRMVKMNCAAM  438 (686)
T ss_pred             cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCC--CCCeEEEecccC
Confidence            34468899888888876655  3444689999999999999999998764322  334566777654

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=97.97  E-value=2.7e-05  Score=66.19  Aligned_cols=27  Identities=22%  Similarity=0.298  Sum_probs=23.8

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      .+...++|+|++|+|||||++.+...+
T Consensus       374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~  400 (588)
T PRK11174        374 PAGQRIALVGPSGAGKTSLLNALLGFL  400 (588)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            355789999999999999999998766

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.97  E-value=3.9e-05  Score=58.30  Aligned_cols=27  Identities=22%  Similarity=0.464  Sum_probs=23.5

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|+|++|+|||||++.+.....
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   55 (251)
T PRK14251         29 EKELTALIGPSGCGKSTFLRCLNRMND   55 (251)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhccc
Confidence            447899999999999999999987653

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=97.97  E-value=4.8e-05  Score=56.83  Aligned_cols=26  Identities=23%  Similarity=0.305  Sum_probs=23.1

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +...++|.|++|+|||||++.++...
T Consensus        39 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   64 (226)
T cd03248          39 PGEVTALVGPSGSGKSTVVALLENFY   64 (226)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            45789999999999999999998665

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.97  E-value=1.5e-05  Score=61.66  Aligned_cols=26  Identities=23%  Similarity=0.415  Sum_probs=23.0

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +...++|.|++|+|||||++.+...+
T Consensus        31 ~Ge~~~i~G~nGaGKSTLl~~i~Gl~   56 (283)
T PRK13636         31 KGEVTAILGGNGAGKSTLFQNLNGIL   56 (283)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45789999999999999999998654

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.97  E-value=4.1e-05  Score=58.20  Aligned_cols=25  Identities=28%  Similarity=0.517  Sum_probs=22.2

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      +...++|+|++|+|||||++.+...
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   54 (252)
T PRK14255         30 QNEITALIGPSGCGKSTYLRTLNRM   54 (252)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            4568999999999999999999764

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=97.97  E-value=4.2e-05  Score=58.17  Aligned_cols=26  Identities=23%  Similarity=0.468  Sum_probs=22.7

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +...++|.|++|+|||||++.+....
T Consensus        31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   56 (253)
T PRK14242         31 QNQVTALIGPSGCGKSTFLRCLNRMN   56 (253)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            45789999999999999999998653

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=97.97  E-value=4.9e-05  Score=57.08  Aligned_cols=27  Identities=33%  Similarity=0.391  Sum_probs=23.2

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +..+++|.|++|+|||||++.++....
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (234)
T cd03251          27 AGETVALVGPSGSGKSTLVNLIPRFYD   53 (234)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccc
Confidence            457899999999999999999986553

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=97.96  E-value=1.7e-05  Score=59.80  Aligned_cols=27  Identities=26%  Similarity=0.428  Sum_probs=23.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|.|++|+|||||++.+...+.
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~   52 (240)
T PRK09493         26 QGEVVVIIGPSGSGKSTLLRCINKLEE   52 (240)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            457899999999999999999986543

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=97.96  E-value=1.1e-05  Score=60.93  Aligned_cols=27  Identities=30%  Similarity=0.453  Sum_probs=23.4

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +..+++|.|++|+|||||++.+...+.
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~   51 (237)
T TIGR00968        25 TGSLVALLGPSGSGKSTLLRIIAGLEQ   51 (237)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            457899999999999999999987553

>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]

Probab=97.96  E-value=0.0001  Score=55.62  Aligned_cols=73  Identities=25%  Similarity=0.346  Sum_probs=51.4

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcC
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKE  125 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~  125 (183)
                      ++.-++++||+|.|||.||+.++..-       .+.|+.++...    +....+   +      ....++++++-..++.
T Consensus       180 QPKGvlLygppgtGktLlaraVahht-------~c~firvsgse----lvqk~i---g------egsrmvrelfvmareh  239 (404)
T KOG0728|consen  180 QPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGSE----LVQKYI---G------EGSRMVRELFVMAREH  239 (404)
T ss_pred             CCcceEEecCCCCchhHHHHHHHhhc-------ceEEEEechHH----HHHHHh---h------hhHHHHHHHHHHHHhc
Confidence            55679999999999999999988742       34466666532    222222   1      1345567777777778


Q ss_pred             CeEEEEEeCCCCc
Q 035585          126 KMILVILDNIWKY  138 (183)
Q Consensus       126 ~~~llvlD~~~~~  138 (183)
                      -+.+++.|++|+.
T Consensus       240 apsiifmdeidsi  252 (404)
T KOG0728|consen  240 APSIIFMDEIDSI  252 (404)
T ss_pred             CCceEeeeccccc
Confidence            8999999999865

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=97.96  E-value=4.5e-05  Score=65.75  Aligned_cols=27  Identities=22%  Similarity=0.302  Sum_probs=23.7

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|+|++|+|||||++.+...+.
T Consensus       477 ~Ge~~~IvG~nGsGKSTLl~lL~Gl~~  503 (659)
T TIGR00954       477 SGNHLLICGPNGCGKSSLFRILGELWP  503 (659)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            456899999999999999999988764

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.96  E-value=4.4e-05  Score=58.00  Aligned_cols=27  Identities=26%  Similarity=0.439  Sum_probs=23.5

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|.|++|+|||||++.+...+.
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~   55 (252)
T PRK14272         29 RGTVNALIGPSGCGKTTFLRAINRMHD   55 (252)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            457899999999999999999987653

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=97.95  E-value=4.4e-05  Score=63.55  Aligned_cols=28  Identities=36%  Similarity=0.523  Sum_probs=24.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      +...++|.|++|+|||||++.++.....
T Consensus        49 ~GEivgIiGpNGSGKSTLLkiLaGLl~P   76 (549)
T PRK13545         49 EGEIVGIIGLNGSGKSTLSNLIAGVTMP   76 (549)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCCC
Confidence            4578999999999999999999887643

>TIGR00708 cobA cob(I)alamin adenosyltransferase

Probab=97.95  E-value=0.00012  Score=52.46  Aligned_cols=114  Identities=24%  Similarity=0.228  Sum_probs=67.0

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC---cCHHHHHHHHHHHh-----CCCc-----hhHHH--
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT---PDIKKIHGEIAEKL-----GLEF-----SEEAE--  111 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~l-----~~~~-----~~~~~--  111 (183)
                      ...+-|++.+|.||||.|..++.+....  -..+.++++-..   ......+..+  .+     +...     .....  
T Consensus         5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~--g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~   80 (173)
T TIGR00708         5 RGIIIVHTGNGKGKTTAAFGMALRALGH--GKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTA   80 (173)
T ss_pred             ccEEEEECCCCCChHHHHHHHHHHHHHC--CCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHH
Confidence            4688999999999999999988877664  223545544433   2323333332  11     1110     11111  


Q ss_pred             --HHHHHHHHHHHhcCCeEEEEEeCCCCc-----ccccccCcCCCCCCCCcEEEEEecCh
Q 035585          112 --SRRASRLYERLKKEKMILVILDNIWKY-----LDLETVGIPFGDDHRGCKLLLTARDC  164 (183)
Q Consensus       112 --~~~~~~~~~~~~~~~~~llvlD~~~~~-----~~~~~l~~~~~~~~~~~~iiitsr~~  164 (183)
                        ........+.+..+.--+|||||+-..     .+.+.+...+....++..+|+|.|+.
T Consensus        81 ~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~  140 (173)
T TIGR00708        81 IAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC  140 (173)
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence              112233344444467789999998633     23444555556667788999999965

Alternate name: corrinoid adenosyltransferase.

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.95  E-value=3.8e-05  Score=59.26  Aligned_cols=27  Identities=26%  Similarity=0.460  Sum_probs=23.6

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|.|++|+|||||++.+.....
T Consensus        46 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~   72 (276)
T PRK14271         46 ARAVTSLMGPTGSGKTTFLRTLNRMND   72 (276)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            457899999999999999999987654

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=97.95  E-value=8.8e-05  Score=57.55  Aligned_cols=28  Identities=21%  Similarity=0.233  Sum_probs=24.2

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ..+.+++|.|++|+||||+++.+...+.
T Consensus        60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~   87 (290)
T TIGR00554        60 KIPYIISIAGSVAVGKSTTARILQALLS   87 (290)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4567899999999999999998877665

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=97.95  E-value=1.5e-05  Score=66.07  Aligned_cols=50  Identities=24%  Similarity=0.206  Sum_probs=32.7

Q ss_pred             cCCeEEEEEeCCCCcccc---cccCcCCCC--CCCCcEEEEEecChHHHhhcCCC
Q 035585          124 KEKMILVILDNIWKYLDL---ETVGIPFGD--DHRGCKLLLTARDCNVLLNMSLC  173 (183)
Q Consensus       124 ~~~~~llvlD~~~~~~~~---~~l~~~~~~--~~~~~~iiitsr~~~~~~~~~~~  173 (183)
                      ..++.+||.||.-+..+.   ......+.+  ..-|...++.|||-.+...+...
T Consensus       445 a~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~dr  499 (539)
T COG1123         445 ALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADR  499 (539)
T ss_pred             hcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCce
Confidence            377889999998766441   111122211  22367899999999999876654

>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional

Probab=97.95  E-value=1.5e-05  Score=62.97  Aligned_cols=62  Identities=10%  Similarity=0.088  Sum_probs=43.7

Q ss_pred             cccccchHHHHHHHHHHhc--cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC
Q 035585           25 YEAFKSRLSTLKSIQDALT--DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT   88 (183)
Q Consensus        25 ~~~~~gR~~~l~~l~~~l~--~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~   88 (183)
                      ...++|+...+..+.+.+.  .....-|+|+|++|+||+++|+.++..-...  ....+.++|...
T Consensus         5 ~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~--~~pfv~v~c~~~   68 (326)
T PRK11608          5 KDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRW--QGPFISLNCAAL   68 (326)
T ss_pred             cCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCcc--CCCeEEEeCCCC
Confidence            3457888888888887665  3334678999999999999999988543221  234556677654

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=97.94  E-value=6.2e-05  Score=63.68  Aligned_cols=127  Identities=17%  Similarity=0.182  Sum_probs=66.2

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhh---ccc---ceEEEEecCCc-------CHHHH----------------HH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEK---LFD---QVVFSEVSQTP-------DIKKI----------------HG   96 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~---~~~---~~~~~~~~~~~-------~~~~~----------------~~   96 (183)
                      +...++|+|++|+|||||++.++.......   .+.   .+.|+  ++..       +..+.                ..
T Consensus       349 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v--~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~  426 (556)
T PRK11819        349 PGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYV--DQSRDALDPNKTVWEEISGGLDIIKVGNREIPSR  426 (556)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEE--eCchhhcCCCCCHHHHHHhhcccccccccHHHHH
Confidence            446899999999999999999987654321   111   12222  1110       11111                12


Q ss_pred             HHHHHhCCCch-------hHHHHHHHHHHHHHHhcCCeEEEEEeCCCCccc---ccccCcCCCCCCCCcEEEEEecChHH
Q 035585           97 EIAEKLGLEFS-------EEAESRRASRLYERLKKEKMILVILDNIWKYLD---LETVGIPFGDDHRGCKLLLTARDCNV  166 (183)
Q Consensus        97 ~i~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~---~~~l~~~~~~~~~~~~iiitsr~~~~  166 (183)
                      .+++.++....       .-+..+.....+......++-+|++||.....+   ...+...+... .+ .+|++||+...
T Consensus       427 ~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~-tvi~vtHd~~~  504 (556)
T PRK11819        427 AYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF-PG-CAVVISHDRWF  504 (556)
T ss_pred             HHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-CC-eEEEEECCHHH
Confidence            23333333210       011112222222222237889999999876543   22222222222 35 48999999998


Q ss_pred             HhhcCCCCcc
Q 035585          167 LLNMSLCRSE  176 (183)
Q Consensus       167 ~~~~~~~~~~  176 (183)
                      +..+......
T Consensus       505 ~~~~~d~i~~  514 (556)
T PRK11819        505 LDRIATHILA  514 (556)
T ss_pred             HHHhCCEEEE
Confidence            8876654433

>PRK07993 DNA polymerase III subunit delta'; Validated

Probab=97.94  E-value=2.2e-05  Score=62.18  Aligned_cols=129  Identities=10%  Similarity=0.107  Sum_probs=72.1

Q ss_pred             HHHHHHHHHhccC-CccEEEEEeCCCCcHHHHHHHHHhHHhhhhccc--c------eEEEEecCCcCHHHHHHHHHHHhC
Q 035585           33 STLKSIQDALTDV-NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFD--Q------VVFSEVSQTPDIKKIHGEIAEKLG  103 (183)
Q Consensus        33 ~~l~~l~~~l~~~-~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~i~~~l~  103 (183)
                      ...+.|.+.+.++ -++.++++|+.|+||+++|..++..+-......  .      +.++.....+++..+.       .
T Consensus         9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~-------p   81 (334)
T PRK07993          9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLT-------P   81 (334)
T ss_pred             HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEe-------c
Confidence            4566777776644 356788999999999999999988774321100  0      0000111111111000       0


Q ss_pred             CCchhHHHHHHHHHHHHHH----hcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecChH-HHh
Q 035585          104 LEFSEEAESRRASRLYERL----KKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDCN-VLL  168 (183)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~----~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~~-~~~  168 (183)
                      ......-..+.++.+.+.+    .+++..++|||+++.+.  ..+.++..+.....++.+|++|.+.+ ++.
T Consensus        82 ~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLp  153 (334)
T PRK07993         82 EKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLA  153 (334)
T ss_pred             ccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChH
Confidence            0000001112223333332    23678899999999774  56677777777777888888887655 443

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=97.94  E-value=4.3e-05  Score=60.40  Aligned_cols=27  Identities=22%  Similarity=0.331  Sum_probs=23.7

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +..+++|+|++|+|||||++.+...+.
T Consensus        32 ~Ge~~~lvG~sGsGKSTL~~~l~Gll~   58 (326)
T PRK11022         32 QGEVVGIVGESGSGKSVSSLAIMGLID   58 (326)
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence            457899999999999999999987664

>PRK06835 DNA replication protein DnaC; Validated

Probab=97.94  E-value=0.00013  Score=57.69  Aligned_cols=38  Identities=26%  Similarity=0.350  Sum_probs=30.1

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEe
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEV   85 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~   85 (183)
                      ....+.++|++|+|||.|+..+++.+..+  ...++|+.+
T Consensus       182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~--g~~V~y~t~  219 (329)
T PRK06835        182 NNENLLFYGNTGTGKTFLSNCIAKELLDR--GKSVIYRTA  219 (329)
T ss_pred             cCCcEEEECCCCCcHHHHHHHHHHHHHHC--CCeEEEEEH
Confidence            34789999999999999999999988765  234666544

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=97.94  E-value=2.1e-05  Score=62.17  Aligned_cols=26  Identities=27%  Similarity=0.374  Sum_probs=23.0

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +...++|+|++|+|||||++.+...+
T Consensus        40 ~Ge~~~IvG~sGsGKSTLl~~l~gl~   65 (327)
T PRK11308         40 RGKTLAVVGESGCGKSTLARLLTMIE   65 (327)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHcCC
Confidence            45789999999999999999998654

>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]

Probab=97.94  E-value=2.6e-05  Score=57.96  Aligned_cols=122  Identities=19%  Similarity=0.152  Sum_probs=67.3

Q ss_pred             HHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhh-ccc--ceEEEEecCCcC-----HHHHHHHHHHHhCCCchhH
Q 035585           38 IQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEK-LFD--QVVFSEVSQTPD-----IKKIHGEIAEKLGLEFSEE  109 (183)
Q Consensus        38 l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~-~~~--~~~~~~~~~~~~-----~~~~~~~i~~~l~~~~~~~  109 (183)
                      +...+....--..++.||||+|||||++-++..+.... .|.  .+..++-.+...     ...  ..+..+.....+-.
T Consensus       128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq--~~~g~R~dVld~cp  205 (308)
T COG3854         128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQ--HGRGRRMDVLDPCP  205 (308)
T ss_pred             HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCch--hhhhhhhhhcccch
Confidence            44444444445689999999999999999988776531 122  244443332110     000  01111111111111


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEEeCCCCcccccccCcCCCCCCCCcEEEEEecChHHHh
Q 035585          110 AESRRASRLYERLKKEKMILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVLL  168 (183)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~~~~l~~~~~~~~~~~~iiitsr~~~~~~  168 (183)
                      .    .+-+....+.-.+-++|+||+...++...++..   ...|.+++.|.|-..+..
T Consensus       206 k----~~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta---~~~GVkli~TaHG~~ied  257 (308)
T COG3854         206 K----AEGMMMAIRSMSPEVIIVDEIGTEEDALAILTA---LHAGVKLITTAHGNGIED  257 (308)
T ss_pred             H----HHHHHHHHHhcCCcEEEEeccccHHHHHHHHHH---HhcCcEEEEeeccccHHH
Confidence            1    122223333456789999999877654444333   345899999999887755

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=97.94  E-value=8.7e-05  Score=56.34  Aligned_cols=24  Identities=21%  Similarity=0.351  Sum_probs=21.0

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      ++.+|+|++|+|||+|+.++.--+
T Consensus        23 ~~~~i~G~NGsGKStll~ai~~~l   46 (247)
T cd03275          23 RFTCIIGPNGSGKSNLMDAISFVL   46 (247)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            588999999999999999987443

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=97.94  E-value=5.7e-05  Score=62.90  Aligned_cols=27  Identities=22%  Similarity=0.345  Sum_probs=23.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|+|++|+|||||++.+.....
T Consensus        28 ~Ge~~~liG~nGsGKSTLl~~l~G~~~   54 (490)
T PRK10938         28 AGDSWAFVGANGSGKSALARALAGELP   54 (490)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            457899999999999999999986543

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=97.94  E-value=4.5e-05  Score=60.89  Aligned_cols=27  Identities=26%  Similarity=0.544  Sum_probs=23.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|.|++|+|||||++.++....
T Consensus        23 ~Ge~~~l~G~nGsGKSTLl~~iaGl~~   49 (352)
T PRK11144         23 AQGITAIFGRSGAGKTSLINAISGLTR   49 (352)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            446899999999999999999987553

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.94  E-value=7.3e-05  Score=57.12  Aligned_cols=27  Identities=26%  Similarity=0.529  Sum_probs=23.6

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|+|++|+|||||++.++..+.
T Consensus        32 ~Ge~~~l~G~nGsGKSTLlk~l~Gl~~   58 (259)
T PRK14260         32 RNKVTAIIGPSGCGKSTFIKTLNRISE   58 (259)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            457899999999999999999987654

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=97.93  E-value=3.4e-05  Score=66.11  Aligned_cols=27  Identities=19%  Similarity=0.283  Sum_probs=23.6

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +..+++|+|++|+|||||++.+...+.
T Consensus        41 ~Ge~~~lvG~nGsGKSTLl~~l~Gll~   67 (623)
T PRK10261         41 RGETLAIVGESGSGKSVTALALMRLLE   67 (623)
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence            457899999999999999999987653

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=97.93  E-value=2.5e-05  Score=62.77  Aligned_cols=27  Identities=30%  Similarity=0.375  Sum_probs=23.4

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ....++|.|++|+|||||++.++....
T Consensus        28 ~Ge~~~l~G~nGsGKSTLL~~iaGl~~   54 (369)
T PRK11000         28 EGEFVVFVGPSGCGKSTLLRMIAGLED   54 (369)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            447899999999999999999987653

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=97.93  E-value=2.6e-05  Score=64.64  Aligned_cols=48  Identities=17%  Similarity=0.086  Sum_probs=31.3

Q ss_pred             CCeEEEEEeCCCCccccccc---CcCCCCCCCCcEEEEEecChHHHhhcCC
Q 035585          125 EKMILVILDNIWKYLDLETV---GIPFGDDHRGCKLLLTARDCNVLLNMSL  172 (183)
Q Consensus       125 ~~~~llvlD~~~~~~~~~~l---~~~~~~~~~~~~iiitsr~~~~~~~~~~  172 (183)
                      .++-++++||+....+.+.-   ...+....++..+++.||+...+.....
T Consensus       473 ~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~  523 (559)
T COG4988         473 SPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADR  523 (559)
T ss_pred             CCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCE
Confidence            67999999998755443322   2223334445678888888887775544

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=97.93  E-value=8.9e-05  Score=58.72  Aligned_cols=26  Identities=27%  Similarity=0.455  Sum_probs=22.9

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +..+++|+|++|+|||||++.+...+
T Consensus        46 ~Ge~~~lvG~sGsGKSTLlk~i~Gl~   71 (331)
T PRK15079         46 EGETLGVVGESGCGKSTFARAIIGLV   71 (331)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCC
Confidence            45789999999999999999998654

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.93  E-value=8.9e-05  Score=56.34  Aligned_cols=26  Identities=27%  Similarity=0.516  Sum_probs=22.7

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +...++|.|++|+|||||++.++...
T Consensus        30 ~Ge~~~I~G~nGsGKSTLl~~i~G~~   55 (251)
T PRK14244         30 KREVTAFIGPSGCGKSTFLRCFNRMN   55 (251)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            45689999999999999999998654

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.93  E-value=0.00015  Score=59.34  Aligned_cols=87  Identities=16%  Similarity=0.209  Sum_probs=48.6

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHh-hhhcccceEEEEecCCc-CHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhc
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQAS-EEKLFDQVVFSEVSQTP-DIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKK  124 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~  124 (183)
                      .++++++|++|+||||++..++..+. .. ....+.++++.... ...+.+....+.++.+.........+...+..+  
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~-~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~--  297 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAARYALLY-GKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL--  297 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhc-CCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh--
Confidence            46899999999999999999988776 22 12346666665431 122333333444444332211112222223333  


Q ss_pred             CCeEEEEEeCCC
Q 035585          125 EKMILVILDNIW  136 (183)
Q Consensus       125 ~~~~llvlD~~~  136 (183)
                      ...-+|++|...
T Consensus       298 ~~~DlVlIDt~G  309 (424)
T PRK05703        298 RDCDVILIDTAG  309 (424)
T ss_pred             CCCCEEEEeCCC
Confidence            345778888653

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=97.93  E-value=1.8e-05  Score=66.16  Aligned_cols=50  Identities=18%  Similarity=0.272  Sum_probs=43.3

Q ss_pred             cccccchHHHHHHHHHHhc------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           25 YEAFKSRLSTLKSIQDALT------DVNVNIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        25 ~~~~~gR~~~l~~l~~~l~------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      ..+++|-++.++++.+.+.      +.+.++++++||+|+|||+|++.+...+...
T Consensus        75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~  130 (644)
T PRK15455         75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERV  130 (644)
T ss_pred             hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence            3468999999999999883      5667899999999999999999999987764

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=97.93  E-value=6.8e-05  Score=65.19  Aligned_cols=28  Identities=29%  Similarity=0.292  Sum_probs=23.7

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .+...++|+|++|+|||||++.+...+.
T Consensus       498 ~~G~~vaIvG~SGsGKSTLlklL~gl~~  525 (708)
T TIGR01193       498 KMNSKTTIVGMSGSGKSTLAKLLVGFFQ  525 (708)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            3457899999999999999999986554

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=97.93  E-value=5.1e-05  Score=64.45  Aligned_cols=28  Identities=29%  Similarity=0.368  Sum_probs=24.0

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .+...++|+|++|+|||||++.+...+.
T Consensus       364 ~~G~~~aivG~sGsGKSTL~~ll~g~~~  391 (574)
T PRK11160        364 KAGEKVALLGRTGCGKSTLLQLLTRAWD  391 (574)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3557899999999999999999987654

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=97.93  E-value=6.9e-05  Score=57.43  Aligned_cols=26  Identities=31%  Similarity=0.525  Sum_probs=22.7

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +...++|.|++|+|||||++.+....
T Consensus        35 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   60 (264)
T PRK14243         35 KNQITAFIGPSGCGKSTILRCFNRLN   60 (264)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhh
Confidence            45789999999999999999998643

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=97.93  E-value=1.2e-05  Score=64.34  Aligned_cols=27  Identities=26%  Similarity=0.389  Sum_probs=23.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|.|++|+|||||++.++....
T Consensus        29 ~Ge~~~llG~sGsGKSTLLr~iaGl~~   55 (356)
T PRK11650         29 DGEFIVLVGPSGCGKSTLLRMVAGLER   55 (356)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHCCCC
Confidence            446899999999999999999987554

>CHL00206 ycf2 Ycf2; Provisional

Probab=97.93  E-value=1.8e-05  Score=73.44  Aligned_cols=28  Identities=29%  Similarity=0.262  Sum_probs=24.5

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ..++-|+++||+|+|||.||++++.+..
T Consensus      1628 ~pPKGILLiGPPGTGKTlLAKALA~es~ 1655 (2281)
T CHL00206       1628 SPSRGILVIGSIGTGRSYLVKYLATNSY 1655 (2281)
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHhcC
Confidence            4567899999999999999999998754

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=97.93  E-value=3.7e-05  Score=65.40  Aligned_cols=28  Identities=32%  Similarity=0.392  Sum_probs=23.8

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .+...++|+|++|+|||||++.+...+.
T Consensus       359 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~  386 (585)
T TIGR01192       359 KAGQTVAIVGPTGAGKTTLINLLQRVYD  386 (585)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHccCCC
Confidence            3557899999999999999999976554

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=97.92  E-value=5.8e-05  Score=63.04  Aligned_cols=26  Identities=23%  Similarity=0.383  Sum_probs=22.9

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +...++|+|++|+|||||++.++..+
T Consensus        29 ~Ge~~~l~G~NGsGKSTLl~~l~G~~   54 (501)
T PRK10762         29 PGRVMALVGENGAGKSTMMKVLTGIY   54 (501)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence            45789999999999999999998655

>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]

Probab=97.92  E-value=9.6e-05  Score=56.05  Aligned_cols=99  Identities=17%  Similarity=0.262  Sum_probs=61.1

Q ss_pred             hhhcCCCcccccchHHHHHHHHHHhc-------------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEE
Q 035585           18 WLKSNKGYEAFKSRLSTLKSIQDALT-------------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSE   84 (183)
Q Consensus        18 ~~~~~~~~~~~~gR~~~l~~l~~~l~-------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~   84 (183)
                      ...|.....++=|-+++++.|.++..             -.++.-+++|||+|.|||.+|++.+.+-...  |-..    
T Consensus       163 DekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aT--FLKL----  236 (424)
T KOG0652|consen  163 DEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNAT--FLKL----  236 (424)
T ss_pred             ccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccch--HHHh----
Confidence            34466666777788889988888653             1345679999999999999999987664432  1100    


Q ss_pred             ecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCC
Q 035585           85 VSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIW  136 (183)
Q Consensus        85 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~  136 (183)
                       .. +.+   ....   ++      .....++..+...++..+.+++||+++
T Consensus       237 -Ag-PQL---VQMf---IG------dGAkLVRDAFaLAKEkaP~IIFIDElD  274 (424)
T KOG0652|consen  237 -AG-PQL---VQMF---IG------DGAKLVRDAFALAKEKAPTIIFIDELD  274 (424)
T ss_pred             -cc-hHH---Hhhh---hc------chHHHHHHHHHHhhccCCeEEEEechh
Confidence             00 000   0000   01      112233444445556889999999987

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=97.92  E-value=8.1e-05  Score=57.65  Aligned_cols=29  Identities=21%  Similarity=0.298  Sum_probs=24.5

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      .+...++|+|++|+|||||++.++..+..
T Consensus        61 ~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p   89 (282)
T cd03291          61 EKGEMLAITGSTGSGKTSLLMLILGELEP   89 (282)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            34468999999999999999999887643

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=97.92  E-value=4.2e-05  Score=61.25  Aligned_cols=28  Identities=29%  Similarity=0.452  Sum_probs=23.8

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      ...+++|.|++|+|||||++.++.....
T Consensus        30 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p   57 (362)
T TIGR03258        30 AGELLALIGKSGCGKTTLLRAIAGFVKA   57 (362)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            4468999999999999999999876543

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=97.92  E-value=4.4e-05  Score=66.80  Aligned_cols=48  Identities=21%  Similarity=0.271  Sum_probs=38.3

Q ss_pred             ccccchHHHHHHHHHHhc------cCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           26 EAFKSRLSTLKSIQDALT------DVNVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        26 ~~~~gR~~~l~~l~~~l~------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      ..++|.++..+.+.+++.      ..+.+.++++||+|+|||++++.++..+..
T Consensus       322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~  375 (784)
T PRK10787        322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGR  375 (784)
T ss_pred             hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence            457788888888887665      235578999999999999999999987653

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.92  E-value=6.4e-05  Score=57.50  Aligned_cols=27  Identities=26%  Similarity=0.491  Sum_probs=23.9

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|.|++|+|||||++.+.....
T Consensus        32 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~   58 (261)
T PRK14258         32 QSKVTAIIGPSGCGKSTFLKCLNRMNE   58 (261)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcccC
Confidence            457899999999999999999987654

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=97.91  E-value=7.2e-05  Score=61.48  Aligned_cols=99  Identities=13%  Similarity=0.218  Sum_probs=55.6

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCC
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEK  126 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~  126 (183)
                      ..-+.|+|++|+|||+|++.+.+.+...  ...++|++..      .+...+.+.+...        ....+...+  ..
T Consensus       141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~~~------~f~~~~~~~l~~~--------~~~~f~~~~--~~  202 (445)
T PRK12422        141 FNPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVRSE------LFTEHLVSAIRSG--------EMQRFRQFY--RN  202 (445)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEeeHH------HHHHHHHHHHhcc--------hHHHHHHHc--cc
Confidence            3568999999999999999999988654  3345665532      2333443333211        112222222  34


Q ss_pred             eEEEEEeCCCCccc----ccccCcCCCC-CCCCcEEEEEecC
Q 035585          127 MILVILDNIWKYLD----LETVGIPFGD-DHRGCKLLLTARD  163 (183)
Q Consensus       127 ~~llvlD~~~~~~~----~~~l~~~~~~-~~~~~~iiitsr~  163 (183)
                      .-+|+|||++....    .+.+...++. ...+..+|+||..
T Consensus       203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~  244 (445)
T PRK12422        203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTC  244 (445)
T ss_pred             CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCC
Confidence            56899999986532    1122222221 1134567777753

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=97.91  E-value=3e-05  Score=61.40  Aligned_cols=27  Identities=19%  Similarity=0.277  Sum_probs=23.7

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +..+++|+|++|+|||||++.+...+.
T Consensus        41 ~Ge~~~ivG~sGsGKSTL~~~l~Gl~~   67 (330)
T PRK09473         41 AGETLGIVGESGSGKSQTAFALMGLLA   67 (330)
T ss_pred             CCCEEEEECCCCchHHHHHHHHHcCCC
Confidence            457899999999999999999987664

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=97.91  E-value=0.00011  Score=56.00  Aligned_cols=26  Identities=35%  Similarity=0.486  Sum_probs=22.9

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +...++|.|++|+|||||++.++..+
T Consensus        46 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   71 (257)
T cd03288          46 PGQKVGICGRTGSGKSSLSLAFFRMV   71 (257)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHccc
Confidence            45789999999999999999998754

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=97.91  E-value=2.4e-05  Score=65.76  Aligned_cols=123  Identities=16%  Similarity=0.102  Sum_probs=68.5

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhh-----cccc-eEEE---------------EecCCc--CHHHHHHHHHHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEK-----LFDQ-VVFS---------------EVSQTP--DIKKIHGEIAEKL  102 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~-----~~~~-~~~~---------------~~~~~~--~~~~~~~~i~~~l  102 (183)
                      +...+.|.|++|+|||+|.+.++..+.-..     +.+. ++|+               +.+...  -..+...+++.+.
T Consensus       418 ~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~v  497 (604)
T COG4178         418 PGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKV  497 (604)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHc
Confidence            446799999999999999999987663210     0011 2332               011111  1122333333333


Q ss_pred             CCC---------chh---HHHHHHHHHHHHHHhcCCeEEEEEeCCCCccc---ccccCcCCCCCCCCcEEEEEecChHHH
Q 035585          103 GLE---------FSE---EAESRRASRLYERLKKEKMILVILDNIWKYLD---LETVGIPFGDDHRGCKLLLTARDCNVL  167 (183)
Q Consensus       103 ~~~---------~~~---~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~---~~~l~~~~~~~~~~~~iiitsr~~~~~  167 (183)
                      +.+         .+-   -+..+..+..+.++.-+++-.+||||+.+..+   -..+...+....+++.||-++|...+.
T Consensus       498 gL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~  577 (604)
T COG4178         498 GLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLW  577 (604)
T ss_pred             CcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhH
Confidence            221         111   12223333334444448999999999876543   222233344566888999999988876


Q ss_pred             h
Q 035585          168 L  168 (183)
Q Consensus       168 ~  168 (183)
                      .
T Consensus       578 ~  578 (604)
T COG4178         578 N  578 (604)
T ss_pred             H
Confidence            5

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=97.90  E-value=7.3e-05  Score=57.56  Aligned_cols=27  Identities=30%  Similarity=0.518  Sum_probs=23.4

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +..+++|+|++|+|||||++.+...+.
T Consensus        50 ~Ge~~~I~G~nGsGKSTLl~~laGl~~   76 (272)
T PRK14236         50 KNRVTAFIGPSGCGKSTLLRCFNRMND   76 (272)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            457899999999999999999986643

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=97.90  E-value=5.3e-05  Score=64.28  Aligned_cols=29  Identities=28%  Similarity=0.305  Sum_probs=24.6

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      .+...++|+|++|+|||||++.+...+..
T Consensus       364 ~~Ge~i~IvG~sGsGKSTLlklL~gl~~p  392 (576)
T TIGR02204       364 RPGETVALVGPSGAGKSTLFQLLLRFYDP  392 (576)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence            35578999999999999999999876643

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=97.90  E-value=0.00019  Score=54.20  Aligned_cols=40  Identities=18%  Similarity=0.293  Sum_probs=30.8

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ   87 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~   87 (183)
                      +..+++|.|++|+|||+|+.++......+  -..++|+....
T Consensus        20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~--ge~~lyvs~ee   59 (237)
T TIGR03877        20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGIYVALEE   59 (237)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEEeeC
Confidence            45789999999999999999987765432  44577777654

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1

Probab=97.90  E-value=0.00018  Score=56.53  Aligned_cols=92  Identities=24%  Similarity=0.302  Sum_probs=54.8

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhh----hcccceEEEEecCCcCHHHHHHHHHHHhCCCchh-------------
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEE----KLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSE-------------  108 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-------------  108 (183)
                      ...++.|+|++|+|||+|+.+++-.....    ..-..++|++.........+ .++++.++.....             
T Consensus        95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi-~~~a~~~g~d~~~~l~~i~~~~~~~~  173 (313)
T TIGR02238        95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRI-RAIAERFGVDPDAVLDNILYARAYTS  173 (313)
T ss_pred             CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHH-HHHHHHcCCChHHhcCcEEEecCCCH
Confidence            44688899999999999998877433211    01235899988876555443 3445555433211             


Q ss_pred             HHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585          109 EAESRRASRLYERLKKEKMILVILDNIWKY  138 (183)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~llvlD~~~~~  138 (183)
                      ....+.+..+...+...+.-+||+|.+..+
T Consensus       174 e~~~~~l~~l~~~i~~~~~~LvVIDSisal  203 (313)
T TIGR02238       174 EHQMELLDYLAAKFSEEPFRLLIVDSIMAL  203 (313)
T ss_pred             HHHHHHHHHHHHHhhccCCCEEEEEcchHh
Confidence            111122233333444456779999987633

This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=97.89  E-value=7.8e-05  Score=62.57  Aligned_cols=26  Identities=42%  Similarity=0.532  Sum_probs=22.7

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +..+++|.|++|+|||||++.+....
T Consensus       309 ~Ge~~~l~G~NGsGKSTLl~~l~Gl~  334 (520)
T TIGR03269       309 EGEIFGIVGTSGAGKTTLSKIIAGVL  334 (520)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44689999999999999999998654

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.89  E-value=4.5e-05  Score=64.80  Aligned_cols=100  Identities=19%  Similarity=0.287  Sum_probs=63.3

Q ss_pred             EEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeE
Q 035585           49 IVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMI  128 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (183)
                      -++++|++|+|||.||.+++....-+       |+++...    +++.+.+   +      ..++.++.++++.+.-++.
T Consensus       703 giLLyGppGcGKT~la~a~a~~~~~~-------fisvKGP----ElL~KyI---G------aSEq~vR~lF~rA~~a~PC  762 (952)
T KOG0735|consen  703 GILLYGPPGCGKTLLASAIASNSNLR-------FISVKGP----ELLSKYI---G------ASEQNVRDLFERAQSAKPC  762 (952)
T ss_pred             ceEEECCCCCcHHHHHHHHHhhCCee-------EEEecCH----HHHHHHh---c------ccHHHHHHHHHHhhccCCe
Confidence            48999999999999999988764432       4444432    2222221   1      1345567788888878999


Q ss_pred             EEEEeCCCCcc-------------cccccCcCCC--CCCCCcEEEEEecChHHHh
Q 035585          129 LVILDNIWKYL-------------DLETVGIPFG--DDHRGCKLLLTARDCNVLL  168 (183)
Q Consensus       129 llvlD~~~~~~-------------~~~~l~~~~~--~~~~~~~iiitsr~~~~~~  168 (183)
                      +|.|||+|+.-             -++.++..++  ..-.|..|+..|...+++.
T Consensus       763 iLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliD  817 (952)
T KOG0735|consen  763 ILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLID  817 (952)
T ss_pred             EEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccC
Confidence            99999998551             1334433332  2244666666665555554

>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional

Probab=97.89  E-value=2.1e-05  Score=65.75  Aligned_cols=64  Identities=11%  Similarity=0.217  Sum_probs=48.7

Q ss_pred             CcccccchHHHHHHHHHHhc--cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCc
Q 035585           24 GYEAFKSRLSTLKSIQDALT--DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTP   89 (183)
Q Consensus        24 ~~~~~~gR~~~l~~l~~~l~--~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (183)
                      ....++|+...+..+.+.+.  ......|+|+|++|+||+++|+.++..-...  ....+.++|..-+
T Consensus       185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~--~~p~v~v~c~~~~  250 (509)
T PRK05022        185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRA--DKPLVYLNCAALP  250 (509)
T ss_pred             cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcC--CCCeEEEEcccCC
Confidence            45678999999988888776  3445689999999999999999998864432  3345677776554

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.89  E-value=3.5e-05  Score=59.44  Aligned_cols=26  Identities=31%  Similarity=0.460  Sum_probs=22.9

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +..+++|+|++|+|||||++.+...+
T Consensus        27 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~   52 (275)
T PRK13639         27 KGEMVALLGPNGAGKSTLFLHFNGIL   52 (275)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45789999999999999999998654

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=97.89  E-value=3.5e-05  Score=65.03  Aligned_cols=28  Identities=21%  Similarity=0.201  Sum_probs=23.7

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .+...++|+|++|+|||||++.+...+.
T Consensus       347 ~~G~~~aivG~sGsGKSTL~~ll~g~~~  374 (547)
T PRK10522        347 KRGELLFLIGGNGSGKSTLAMLLTGLYQ  374 (547)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3457899999999999999999986553

>PRK11823 DNA repair protein RadA; Provisional

Probab=97.89  E-value=3.8e-05  Score=63.19  Aligned_cols=88  Identities=25%  Similarity=0.317  Sum_probs=53.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchh--HHHHHHHHHHHHHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSE--EAESRRASRLYERLK  123 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~~~  123 (183)
                      +..++.|.|++|+|||||+.+++......  -..++|+......  ..+.. -++.++.....  .........+.+.+.
T Consensus        79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ees~--~qi~~-ra~rlg~~~~~l~~~~e~~l~~i~~~i~  153 (446)
T PRK11823         79 PGSVVLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSGEESA--SQIKL-RAERLGLPSDNLYLLAETNLEAILATIE  153 (446)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccccH--HHHHH-HHHHcCCChhcEEEeCCCCHHHHHHHHH
Confidence            34689999999999999999999877643  3357787765432  22222 23444432111  000112344555555


Q ss_pred             cCCeEEEEEeCCCCc
Q 035585          124 KEKMILVILDNIWKY  138 (183)
Q Consensus       124 ~~~~~llvlD~~~~~  138 (183)
                      +.+.-+||+|.++.+
T Consensus       154 ~~~~~lVVIDSIq~l  168 (446)
T PRK11823        154 EEKPDLVVIDSIQTM  168 (446)
T ss_pred             hhCCCEEEEechhhh
Confidence            567889999998644

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=97.89  E-value=7.7e-05  Score=62.34  Aligned_cols=26  Identities=35%  Similarity=0.514  Sum_probs=22.5

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +..+++|+|++|+|||||++.+....
T Consensus       277 ~Ge~~~liG~NGsGKSTLl~~l~G~~  302 (501)
T PRK10762        277 KGEILGVSGLMGAGRTELMKVLYGAL  302 (501)
T ss_pred             CCcEEEEecCCCCCHHHHHHHHhCCC
Confidence            34689999999999999999998654

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=97.88  E-value=6.6e-05  Score=56.52  Aligned_cols=27  Identities=22%  Similarity=0.293  Sum_probs=23.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|.|++|+|||||++.+.....
T Consensus        24 ~Ge~~~i~G~nG~GKStLl~~l~G~~~   50 (235)
T cd03299          24 RGDYFVILGPTGSGKSVLLETIAGFIK   50 (235)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence            457899999999999999999987543

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.88  E-value=0.00013  Score=59.40  Aligned_cols=27  Identities=30%  Similarity=0.436  Sum_probs=23.1

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ....++++|++|+||||++..++....
T Consensus       190 ~g~vi~lvGpnG~GKTTtlakLA~~~~  216 (420)
T PRK14721        190 QGGVYALIGPTGVGKTTTTAKLAARAV  216 (420)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            456899999999999999999887643

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=97.88  E-value=6.5e-05  Score=60.04  Aligned_cols=27  Identities=30%  Similarity=0.546  Sum_probs=23.2

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ...+++|.|++|+|||||++.++....
T Consensus        22 ~Gei~~l~G~nGsGKSTLl~~iaGl~~   48 (354)
T TIGR02142        22 GQGVTAIFGRSGSGKTTLIRLIAGLTR   48 (354)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            346899999999999999999987653

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.88  E-value=3.7e-05  Score=59.44  Aligned_cols=27  Identities=30%  Similarity=0.337  Sum_probs=23.4

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +..+++|.|++|+|||||++.++..+.
T Consensus        32 ~Ge~~~i~G~nGaGKSTLl~~i~G~~~   58 (279)
T PRK13635         32 EGEWVAIVGHNGSGKSTLAKLLNGLLL   58 (279)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            456899999999999999999986654

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.88  E-value=6.2e-05  Score=57.18  Aligned_cols=26  Identities=27%  Similarity=0.483  Sum_probs=23.1

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +..+++|.|++|+|||||++.+....
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   54 (251)
T PRK14270         29 ENKITALIGPSGCGKSTFLRCLNRMN   54 (251)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            45789999999999999999999754

>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF

Probab=97.88  E-value=2.4e-05  Score=61.89  Aligned_cols=58  Identities=10%  Similarity=0.061  Sum_probs=37.6

Q ss_pred             cchHHHHHHHHHHhc--cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC
Q 035585           29 KSRLSTLKSIQDALT--DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT   88 (183)
Q Consensus        29 ~gR~~~l~~l~~~l~--~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~   88 (183)
                      +|+...+..+.+.+.  .....-|+|+|++|+||+++|+.++..-...  ....+.++|...
T Consensus         2 iG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~--~~pfv~vnc~~~   61 (329)
T TIGR02974         2 IGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRW--QGPLVKLNCAAL   61 (329)
T ss_pred             CcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCcc--CCCeEEEeCCCC
Confidence            455555555555444  2334668999999999999999988654322  233455666643

Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=97.88  E-value=3.6e-05  Score=64.18  Aligned_cols=73  Identities=23%  Similarity=0.336  Sum_probs=47.2

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcC
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKE  125 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~  125 (183)
                      .+..++++||+|+|||+||++++......       |+.+... .+   ....        .. .....+..++...+..
T Consensus       275 ~~~giLl~GpPGtGKT~lAkava~~~~~~-------fi~v~~~-~l---~sk~--------vG-esek~ir~~F~~A~~~  334 (494)
T COG0464         275 PPKGVLLYGPPGTGKTLLAKAVALESRSR-------FISVKGS-EL---LSKW--------VG-ESEKNIRELFEKARKL  334 (494)
T ss_pred             CCCeeEEECCCCCCHHHHHHHHHhhCCCe-------EEEeeCH-HH---hccc--------cc-hHHHHHHHHHHHHHcC
Confidence            44579999999999999999999965543       2222221 11   1111        01 1233456666666668


Q ss_pred             CeEEEEEeCCCCc
Q 035585          126 KMILVILDNIWKY  138 (183)
Q Consensus       126 ~~~llvlD~~~~~  138 (183)
                      .+.+|+|||+|..
T Consensus       335 ~p~iiFiDEiDs~  347 (494)
T COG0464         335 APSIIFIDEIDSL  347 (494)
T ss_pred             CCcEEEEEchhhh
Confidence            8999999999855

>PRK04328 hypothetical protein; Provisional

Probab=97.87  E-value=0.00016  Score=54.97  Aligned_cols=41  Identities=20%  Similarity=0.286  Sum_probs=31.4

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT   88 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~   88 (183)
                      +..+++|.|++|+|||+|+.+++...-.+  -..++|+.....
T Consensus        22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~--ge~~lyis~ee~   62 (249)
T PRK04328         22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGVYVALEEH   62 (249)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEeeCC
Confidence            45789999999999999999987764332  345778777554

>PRK08118 topology modulation protein; Reviewed

Probab=97.87  E-value=3.1e-05  Score=55.34  Aligned_cols=35  Identities=23%  Similarity=0.467  Sum_probs=26.8

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHhhh-hcccceEE
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQASEE-KLFDQVVF   82 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~-~~~~~~~~   82 (183)
                      .-|.|+|++|+||||||+.+++.+... ..++.++|
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~   37 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW   37 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence            358899999999999999999987654 12444554

>cd00046 DEXDc DEAD-like helicases superfamily

Probab=97.87  E-value=3.4e-05  Score=52.21  Aligned_cols=35  Identities=20%  Similarity=-0.067  Sum_probs=25.3

Q ss_pred             EEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEE
Q 035585           49 IVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFS   83 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~   83 (183)
                      .+.|.|++|+|||+++..+............++++
T Consensus         2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~   36 (144)
T cd00046           2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVL   36 (144)
T ss_pred             CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEE
Confidence            46899999999999988888776653223345554

A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=97.87  E-value=0.00012  Score=61.24  Aligned_cols=26  Identities=31%  Similarity=0.410  Sum_probs=22.8

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      ...+++|+|++|+|||||++.++...
T Consensus        30 ~Ge~~~liG~nGsGKSTLl~~i~Gl~   55 (510)
T PRK09700         30 PGEIHALLGENGAGKSTLMKVLSGIH   55 (510)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcCCc
Confidence            45789999999999999999998654

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.87  E-value=3.3e-05  Score=59.64  Aligned_cols=27  Identities=22%  Similarity=0.275  Sum_probs=23.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|+|++|+|||||++.+.....
T Consensus        32 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~   58 (277)
T PRK13642         32 KGEWVSIIGQNGSGKSTTARLIDGLFE   58 (277)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            457899999999999999999986553

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.87  E-value=3.4e-05  Score=59.89  Aligned_cols=26  Identities=31%  Similarity=0.534  Sum_probs=23.0

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +...++|.|++|+|||||++.+...+
T Consensus        32 ~Ge~~~i~G~nGaGKSTLl~~l~Gl~   57 (287)
T PRK13637         32 DGEFVGLIGHTGSGKSTLIQHLNGLL   57 (287)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            45789999999999999999998654

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.87  E-value=9.1e-05  Score=62.95  Aligned_cols=27  Identities=26%  Similarity=0.329  Sum_probs=22.8

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      .+..+++++||+|.||||++..+.+.+
T Consensus       492 ~pGe~vALVGPSGsGKSTiasLL~rfY  518 (716)
T KOG0058|consen  492 RPGEVVALVGPSGSGKSTIASLLLRFY  518 (716)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence            345689999999999999999987644

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.86  E-value=0.00012  Score=55.53  Aligned_cols=26  Identities=23%  Similarity=0.525  Sum_probs=22.7

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +...++|.|++|+|||||++.++...
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (250)
T PRK14266         28 KNSVTALIGPSGCGKSTFIRTLNRMN   53 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhh
Confidence            45789999999999999999998643

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=97.86  E-value=6.2e-05  Score=63.15  Aligned_cols=26  Identities=23%  Similarity=0.500  Sum_probs=23.2

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +...++|+|++|+|||||++.++...
T Consensus        25 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~   50 (520)
T TIGR03269        25 EGEVLGILGRSGAGKSVLMHVLRGMD   50 (520)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhcc
Confidence            45789999999999999999998864

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=97.86  E-value=0.00011  Score=54.94  Aligned_cols=25  Identities=28%  Similarity=0.461  Sum_probs=22.3

Q ss_pred             EEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           49 IVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      +++|.|++|+|||||++.+...+..
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~   25 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSR   25 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence            4789999999999999999988764

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=97.86  E-value=9.5e-05  Score=62.53  Aligned_cols=128  Identities=17%  Similarity=0.189  Sum_probs=65.8

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhh---ccc---ceEEEEecC-----CcCHHHH----------------HHHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEK---LFD---QVVFSEVSQ-----TPDIKKI----------------HGEI   98 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~---~~~---~~~~~~~~~-----~~~~~~~----------------~~~i   98 (183)
                      +...++|.|++|+|||||++.+........   .+.   .+.|+.-..     ..+..+.                ...+
T Consensus       347 ~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~  426 (552)
T TIGR03719       347 PGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAY  426 (552)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHH
Confidence            446899999999999999999987654220   111   122221110     0011111                1223


Q ss_pred             HHHhCCCch-------hHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcccc---cccCcCCCCCCCCcEEEEEecChHHHh
Q 035585           99 AEKLGLEFS-------EEAESRRASRLYERLKKEKMILVILDNIWKYLDL---ETVGIPFGDDHRGCKLLLTARDCNVLL  168 (183)
Q Consensus        99 ~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~~---~~l~~~~~~~~~~~~iiitsr~~~~~~  168 (183)
                      ++.++....       ..+..+.....+......++-++++||..+..+.   ..+...+... .+ .||++||+...+.
T Consensus       427 l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~-~viivsHd~~~~~  504 (552)
T TIGR03719       427 VGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF-AG-CAVVISHDRWFLD  504 (552)
T ss_pred             HHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC-CC-eEEEEeCCHHHHH
Confidence            344333210       0111122222222223378899999998766432   1222222222 24 4999999999888


Q ss_pred             hcCCCCc
Q 035585          169 NMSLCRS  175 (183)
Q Consensus       169 ~~~~~~~  175 (183)
                      .+.....
T Consensus       505 ~~~d~i~  511 (552)
T TIGR03719       505 RIATHIL  511 (552)
T ss_pred             HhCCEEE
Confidence            7665443

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.86  E-value=8.9e-05  Score=56.75  Aligned_cols=27  Identities=30%  Similarity=0.532  Sum_probs=23.2

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      .+...++|.|++|+|||||++.+...+
T Consensus        32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   58 (261)
T PRK14263         32 RKNEITGFIGPSGCGKSTVLRSLNRMN   58 (261)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHccc
Confidence            345789999999999999999997654

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=97.85  E-value=6.8e-05  Score=54.09  Aligned_cols=24  Identities=29%  Similarity=0.303  Sum_probs=21.2

Q ss_pred             EEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           49 IVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +++|+|++|+||||+++.++.++.
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~~   24 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENFG   24 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcC
Confidence            478999999999999999988753

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=97.85  E-value=7.2e-05  Score=64.92  Aligned_cols=28  Identities=32%  Similarity=0.471  Sum_probs=23.9

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .+...++|+|++|+|||||++.+...+.
T Consensus       481 ~~G~~vaivG~sGsGKSTL~~ll~g~~~  508 (694)
T TIGR01846       481 KPGEFIGIVGPSGSGKSTLTKLLQRLYT  508 (694)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3457899999999999999999987654

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=97.85  E-value=2.3e-05  Score=62.32  Aligned_cols=113  Identities=9%  Similarity=0.092  Sum_probs=59.2

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHH-HHHHHHHHhCCCchhHHHHHHHHHHHHHHhc
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKK-IHGEIAEKLGLEFSEEAESRRASRLYERLKK  124 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~  124 (183)
                      +..+++|+|++|+||||+++.+...+...  ....++ .+........ -...+..+......    .............
T Consensus       121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~--~~~~i~-tiEdp~E~~~~~~~~~i~q~evg~~----~~~~~~~l~~~lr  193 (343)
T TIGR01420       121 PRGLILVTGPTGSGKSTTLASMIDYINKN--AAGHII-TIEDPIEYVHRNKRSLINQREVGLD----TLSFANALRAALR  193 (343)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHhhCcC--CCCEEE-EEcCChhhhccCccceEEccccCCC----CcCHHHHHHHhhc
Confidence            45799999999999999999988766532  222222 1222111100 00000000001100    0112333333333


Q ss_pred             CCeEEEEEeCCCCcccccccCcCCCCCCCCcEEEEEecChHHHh
Q 035585          125 EKMILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVLL  168 (183)
Q Consensus       125 ~~~~llvlD~~~~~~~~~~l~~~~~~~~~~~~iiitsr~~~~~~  168 (183)
                      ..+-+|++||+.+.........   ....|..++.|.|..+...
T Consensus       194 ~~pd~i~vgEird~~~~~~~l~---aa~tGh~v~~T~Ha~~~~~  234 (343)
T TIGR01420       194 EDPDVILIGEMRDLETVELALT---AAETGHLVFGTLHTNSAAQ  234 (343)
T ss_pred             cCCCEEEEeCCCCHHHHHHHHH---HHHcCCcEEEEEcCCCHHH
Confidence            8899999999986654433222   2233556888888766554

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.85  E-value=2.8e-05  Score=64.88  Aligned_cols=61  Identities=21%  Similarity=0.177  Sum_probs=46.2

Q ss_pred             cchhhhhhcCCCcccccchHHHHHHHHHHhc-----cCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           13 IAEEVWLKSNKGYEAFKSRLSTLKSIQDALT-----DVNVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        13 ~~~~~~~~~~~~~~~~~gR~~~l~~l~~~l~-----~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      ..++.....|.....+.-..+-++++.+|+.     ..+.++++|+||+|+||||.++.+++.+..
T Consensus         6 ~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~   71 (519)
T PF03215_consen    6 SEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGF   71 (519)
T ss_pred             cCccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3445555666666677767777778888876     234578999999999999999999988753

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=97.84  E-value=2e-05  Score=63.33  Aligned_cols=27  Identities=30%  Similarity=0.428  Sum_probs=23.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ...+++|.|++|+|||||++.++....
T Consensus        39 ~Ge~~~LlGpsGsGKSTLLr~IaGl~~   65 (375)
T PRK09452         39 NGEFLTLLGPSGCGKTTVLRLIAGFET   65 (375)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            447899999999999999999986554

>TIGR01069 mutS2 MutS2 family protein

Probab=97.84  E-value=2.6e-05  Score=68.05  Aligned_cols=25  Identities=20%  Similarity=0.264  Sum_probs=22.2

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      ..+.++|+||+|.||||+++.+...
T Consensus       321 ~~~~liItGpNg~GKSTlLK~i~~~  345 (771)
T TIGR01069       321 EKRVLAITGPNTGGKTVTLKTLGLL  345 (771)
T ss_pred             CceEEEEECCCCCCchHHHHHHHHH
Confidence            3478999999999999999999766

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=97.84  E-value=9.1e-05  Score=57.18  Aligned_cols=27  Identities=37%  Similarity=0.529  Sum_probs=23.6

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|+|++|+|||||++.++..+.
T Consensus        29 ~Ge~~~IvG~nGsGKSTLl~~L~gl~~   55 (275)
T cd03289          29 PGQRVGLLGRTGSGKSTLLSAFLRLLN   55 (275)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhhcC
Confidence            457899999999999999999987654

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=97.84  E-value=8.1e-05  Score=63.16  Aligned_cols=28  Identities=29%  Similarity=0.453  Sum_probs=23.8

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .+...++|+|++|+|||||++.+...+.
T Consensus       339 ~~G~~~~ivG~sGsGKSTLl~ll~g~~~  366 (569)
T PRK10789        339 KPGQMLGICGPTGSGKSTLLSLIQRHFD  366 (569)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            3557899999999999999999986554

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=97.84  E-value=6e-05  Score=61.06  Aligned_cols=51  Identities=22%  Similarity=0.096  Sum_probs=37.3

Q ss_pred             CeEEEEEeCCCCcccccccCcCCCC-CCCCcEEEEEecChHHHhhcCCCCcc
Q 035585          126 KMILVILDNIWKYLDLETVGIPFGD-DHRGCKLLLTARDCNVLLNMSLCRSE  176 (183)
Q Consensus       126 ~~~llvlD~~~~~~~~~~l~~~~~~-~~~~~~iiitsr~~~~~~~~~~~~~~  176 (183)
                      .+.||.||+..++.+++...+.-+- ....-.++|+|||..++..+++..++
T Consensus       430 EPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~VCtdIIH  481 (807)
T KOG0066|consen  430 EPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDSVCTDIIH  481 (807)
T ss_pred             CceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHHHHHHHhh
Confidence            5679999999988887766443221 12244699999999999988876554

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.84  E-value=8e-05  Score=53.74  Aligned_cols=24  Identities=33%  Similarity=0.527  Sum_probs=21.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           49 IVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .+.|.|++|+||||+|+.+.+++.
T Consensus         2 riiilG~pGaGK~T~A~~La~~~~   25 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKLG   25 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            378999999999999999999854

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=97.84  E-value=2.9e-05  Score=66.07  Aligned_cols=29  Identities=24%  Similarity=0.247  Sum_probs=24.5

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      .+...++|+|++|+|||||++.+...+..
T Consensus       365 ~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p  393 (592)
T PRK10790        365 PSRGFVALVGHTGSGKSTLASLLMGYYPL  393 (592)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence            35578999999999999999999876643

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.84  E-value=0.0001  Score=56.55  Aligned_cols=26  Identities=27%  Similarity=0.534  Sum_probs=22.9

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +...++|+|++|+|||||++.+....
T Consensus        41 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   66 (265)
T PRK14252         41 EKQVTALIGPSGCGKSTFLRCFNRMH   66 (265)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccc
Confidence            45789999999999999999998654

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=97.84  E-value=1.9e-05  Score=63.05  Aligned_cols=27  Identities=33%  Similarity=0.459  Sum_probs=23.4

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|.|++|+|||||++.++....
T Consensus        27 ~Ge~~~llGpsGsGKSTLLr~IaGl~~   53 (353)
T PRK10851         27 SGQMVALLGPSGSGKTTLLRIIAGLEH   53 (353)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            457899999999999999999987553

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=97.84  E-value=1.7e-05  Score=63.33  Aligned_cols=27  Identities=30%  Similarity=0.407  Sum_probs=23.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ....++|.|++|+|||||++.++....
T Consensus        31 ~Ge~~~llGpsGsGKSTLLr~IaGl~~   57 (351)
T PRK11432         31 QGTMVTLLGPSGCGKTTVLRLVAGLEK   57 (351)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHCCCC
Confidence            447899999999999999999986554

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=97.84  E-value=5.2e-05  Score=63.46  Aligned_cols=26  Identities=27%  Similarity=0.431  Sum_probs=22.8

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +..+++|.|++|+|||||++.++...
T Consensus       288 ~Ge~~~l~G~NGsGKSTLl~~i~Gl~  313 (510)
T PRK15439        288 AGEILGLAGVVGAGRTELAETLYGLR  313 (510)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcCCC
Confidence            45689999999999999999998654

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=97.83  E-value=7.2e-05  Score=63.13  Aligned_cols=28  Identities=21%  Similarity=0.262  Sum_probs=24.1

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .+...++|+|++|+|||||++.+...+.
T Consensus       342 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~  369 (544)
T TIGR01842       342 QAGEALAIIGPSGSGKSTLARLIVGIWP  369 (544)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3557899999999999999999987654

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=97.83  E-value=0.00012  Score=61.33  Aligned_cols=26  Identities=27%  Similarity=0.400  Sum_probs=22.7

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +..+++|+|++|+|||||++.++...
T Consensus       288 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~  313 (510)
T PRK09700        288 RGEILGFAGLVGSGRTELMNCLFGVD  313 (510)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            45789999999999999999998654

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=97.83  E-value=0.00018  Score=55.84  Aligned_cols=48  Identities=21%  Similarity=0.221  Sum_probs=32.8

Q ss_pred             cCCeEEEEEeCCCCccc------ccccCcCCCCCCCCcEEEEEecChHHHhhcCC
Q 035585          124 KEKMILVILDNIWKYLD------LETVGIPFGDDHRGCKLLLTARDCNVLLNMSL  172 (183)
Q Consensus       124 ~~~~~llvlD~~~~~~~------~~~l~~~~~~~~~~~~iiitsr~~~~~~~~~~  172 (183)
                      ...+-|||-||.....+      +-.++..+.. ..|+.+|+.|||-.++..+..
T Consensus       169 a~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~-e~~~aiilITHDl~vva~~aD  222 (316)
T COG0444         169 ALNPKLLIADEPTTALDVTVQAQILDLLKELQR-EKGTALILITHDLGVVAEIAD  222 (316)
T ss_pred             hCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhcc
Confidence            37788999999876543      1122222222 458889999999999886655

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=97.83  E-value=0.00024  Score=56.13  Aligned_cols=38  Identities=24%  Similarity=0.238  Sum_probs=27.8

Q ss_pred             HHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           34 TLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        34 ~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ....+.... +.-++.++++|+.|+|||++|+.++..+-
T Consensus         9 ~w~~l~~~~-~r~~hA~Lf~G~~G~GK~~la~~~a~~ll   46 (325)
T PRK08699          9 QWRQIAEHW-ERRPNAWLFAGKKGIGKTAFARFAAQALL   46 (325)
T ss_pred             HHHHHHHhc-CCcceEEEeECCCCCCHHHHHHHHHHHHc
Confidence            344444442 23346789999999999999999988764

>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]

Probab=97.83  E-value=6.2e-05  Score=58.21  Aligned_cols=72  Identities=19%  Similarity=0.271  Sum_probs=48.0

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcC
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKE  125 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~  125 (183)
                      .+..++|||++|.|||.+++.++..+...  |     +-++.        ..+.+...     ......++..+.+.+..
T Consensus       165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~n--f-----l~v~s--------s~lv~kyi-----GEsaRlIRemf~yA~~~  224 (388)
T KOG0651|consen  165 PPKGLLLYGPPGTGKTLLARAVAATMGVN--F-----LKVVS--------SALVDKYI-----GESARLIRDMFRYAREV  224 (388)
T ss_pred             CCceeEEeCCCCCchhHHHHHHHHhcCCc--e-----EEeeH--------hhhhhhhc-----ccHHHHHHHHHHHHhhh
Confidence            45679999999999999999999988765  2     11111        11211111     12344556677777767


Q ss_pred             CeEEEEEeCCCC
Q 035585          126 KMILVILDNIWK  137 (183)
Q Consensus       126 ~~~llvlD~~~~  137 (183)
                      .+.+|.+||+|-
T Consensus       225 ~pciifmdeiDA  236 (388)
T KOG0651|consen  225 IPCIIFMDEIDA  236 (388)
T ss_pred             CceEEeehhhhh
Confidence            789999999873

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=97.83  E-value=4.3e-05  Score=61.61  Aligned_cols=29  Identities=31%  Similarity=0.466  Sum_probs=26.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      ....+.|||+.|+|||.|+.++.+.....
T Consensus       112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~  140 (408)
T COG0593         112 AYNPLFIYGGVGLGKTHLLQAIGNEALAN  140 (408)
T ss_pred             cCCcEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            46789999999999999999999988775

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.83  E-value=0.00013  Score=55.78  Aligned_cols=27  Identities=41%  Similarity=0.625  Sum_probs=23.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|.|++|+|||||++.+.....
T Consensus        35 ~Ge~~~i~G~nGsGKSTLl~~iaG~~~   61 (257)
T PRK14246         35 NNSIFGIMGPSGSGKSTLLKVLNRLIE   61 (257)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            457899999999999999999986543

>PRK10867 signal recognition particle protein; Provisional

Probab=97.83  E-value=0.0002  Score=58.56  Aligned_cols=57  Identities=19%  Similarity=0.317  Sum_probs=36.5

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC-cCHHHHHHHHHHHhC
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT-PDIKKIHGEIAEKLG  103 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~l~  103 (183)
                      ++.++.++|++|+||||++..++..+... ....+..+++... +...+.+...++..+
T Consensus        99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~-~G~kV~lV~~D~~R~aa~eQL~~~a~~~g  156 (433)
T PRK10867         99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK-KKKKVLLVAADVYRPAAIEQLKTLGEQIG  156 (433)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHHHHh-cCCcEEEEEccccchHHHHHHHHHHhhcC
Confidence            36789999999999999999998877654 1223555555433 222333444455544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	183
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-27
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	2e-18
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	2e-14
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	3e-12
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	1e-04
2pff_A	1688	Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl	2e-04
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score =  105 bits (262), Expect = 8e-27
 Identities = 28/153 (18%), Positives = 59/153 (38%), Gaps = 23/153 (15%)

Query: 30  SRLSTLKSIQDALTDVNVN-IVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVF----SE 84
           SRL     ++ AL ++     V + G+ G GKT +  +       +   D  +F      
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191

Query: 85  VSQTPDIKKIHGEIAEKLGLEFSEEAES-----RRASRLYERLK---KEKMI---LVILD 133
            +    + ++  ++  ++   ++  ++       R   +   L+   K K     L++L 
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251

Query: 134 NIWKYLDLETVGIPFGDDHRGCKLLLTARDCNV 166
           N+    + +     F  +   CK+LLT R   V
Sbjct: 252 NVQ---NAKAWN-AF--NL-SCKILLTTRFKQV 277

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score = 81.2 bits (200), Expect = 2e-18
 Identities = 24/154 (15%), Positives = 53/154 (34%), Gaps = 18/154 (11%)

Query: 30  SRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASE--EKLFDQVVFSEVSQ 87
             +  +    D + D++   + ++G  G GK+ +  +   ++ +     +D +V+ + S 
Sbjct: 135 YHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSG 194

Query: 88  TP---------DIKKIHGEIAEKLGLEFSEEAESRRASRLYER-LKKEKMILVILDNIWK 137
           T          DI  +     + L     E   S    R+    L      L + D++ +
Sbjct: 195 TAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQ 254

Query: 138 YLDLETVGIPFGDDHRGCKLLLTARDCNVLLNMS 171
              +              + L+T RD  +    S
Sbjct: 255 EETIRWA------QELRLRCLVTTRDVEISNAAS 282

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 69.9 bits (171), Expect = 2e-14
 Identities = 38/148 (25%), Positives = 58/148 (39%), Gaps = 19/148 (12%)

Query: 28  FKSRLSTLKSIQDALTDVNV--NIVGVYGMGGIGKTTLVKEFARQASE-EKLF-DQVVFS 83
           F +R   + +IQ  L  +N     V +YGM G GK+ L  E  R  S  E  F   V + 
Sbjct: 126 FVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWV 185

Query: 84  EVSQT--PDIKKIHGEIAEKLGLEFS------EEAESRRASRLYERLKKEKMILVILDNI 135
            + +     +      +  +L  E S         E  +       L+K    L+ILD++
Sbjct: 186 SIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDV 245

Query: 136 WKYLDLETVGIPFGDDHRGCKLLLTARD 163
           W    L+            C++LLT RD
Sbjct: 246 WDPWVLKAFD-------NQCQILLTTRD 266

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score = 63.3 bits (154), Expect = 3e-12
 Identities = 30/138 (21%), Positives = 49/138 (35%), Gaps = 21/138 (15%)

Query: 46  NVNIVGVYGMGGIGKTTLVKEFARQASEEKLF--DQVVFSEVSQTPDIKKIHG--EIAEK 101
               V ++GM G GK+ L  E  R  S  +      V +  V +      +     +  +
Sbjct: 146 EPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTR 205

Query: 102 LGLEFSEEAESRR-----ASRLYERLK-KEKMILVILDNIW--KYLDLETVGIPFGDDHR 153
           L  + S              RL   +  K    L+ILD++W    L              
Sbjct: 206 LDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLK---------AFDS 256

Query: 154 GCKLLLTARDCNVLLNMS 171
            C++LLT RD +V  ++ 
Sbjct: 257 QCQILLTTRDKSVTDSVM 274

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Length = 389

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 4/92 (4%)

Query: 52  VYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAE 111
           + G  G GKT  +++      ++    + V+       +   I GEIA  L + F     
Sbjct: 49  LLGRPGTGKTVTLRKLWELYKDKTTA-RFVYINGFIYRNFTAIIGEIARSLNIPFPRRGL 107

Query: 112 SRRA--SRLYERLKK-EKMILVILDNIWKYLD 140
           SR    + L E L++ +  + ++LD+ +    
Sbjct: 108 SRDEFLALLVEHLRERDLYMFLVLDDAFNLAP 139

>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 11/59 (18%)

Query: 1    ARRFDDRIFYRTIAEEVWLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIG 59
              + D    +  ++           EAF +  S +    +    V+V+ VG     G+G
Sbjct: 1006 ISQVDPITLFVLVS---------VVEAFIA--SGITDPYEMYKYVHVSEVGNCSGSGMG 1053

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} Length = 318

 Score = 39.5 bits (91), Expect = 3e-04
 Identities = 16/108 (14%), Positives = 35/108 (32%), Gaps = 8/108 (7%)

Query: 36  KSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQ---ASEEKLFDQVVFSEVS--QTPD 90
             I D+L      +  +       K  LV +   +   +S  K      +  +   +   
Sbjct: 34  LPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93

Query: 91  IKKIHGEIAEKLGLEFSEEAESRRASRLYER---LKKEKMILVILDNI 135
           +  ++ +I   +  E      S  A   Y       K++  L+++ N 
Sbjct: 94  MDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNP 141

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	183
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.84
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.77
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	99.77
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	99.76
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	99.51
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	99.5
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	99.5
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	99.48
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	99.47
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	99.47
2fna_A	357	Conserved hypothetical protein; structural genomic	99.44
2chg_A	226	Replication factor C small subunit; DNA-binding pr	99.44
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	99.39
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	99.34
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	99.31
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	99.28
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	99.21
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	99.18
2chq_A	319	Replication factor C small subunit; DNA-binding pr	99.17
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	99.02
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	99.02
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	99.01
3pvs_A	447	Replication-associated recombination protein A; ma	98.99
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	98.98
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	98.96
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	98.96
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	98.94
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	98.94
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	98.91
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	98.91
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	98.9
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.89
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	98.86
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	98.86
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	98.82
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	98.79
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	98.78
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	98.77
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	98.77
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	98.76
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	98.75
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	98.75
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	98.74
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	98.74
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	98.7
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	98.69
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	98.69
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	98.69
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	98.67
3co5_A	143	Putative two-component system transcriptional RES	98.66
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	98.66
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	98.65
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	98.65
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	98.64
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	98.62
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	98.61
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	98.59
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	98.57
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	98.56
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	98.56
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	98.56
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	98.54
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	98.53
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	98.5
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	98.5
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	98.5
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	98.48
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	98.47
3bos_A	242	Putative DNA replication factor; P-loop containing	98.44
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	98.43
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	98.42
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	98.42
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	98.4
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	98.38
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	98.36
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.35
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.34
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	98.33
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	98.33
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	98.31
2cvh_A	220	DNA repair and recombination protein RADB; filamen	98.31
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	98.3
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	98.28
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.28
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	98.28
2qgz_A	308	Helicase loader, putative primosome component; str	98.27
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	98.26
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	98.25
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	98.24
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	98.24
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	98.23
4a74_A	231	DNA repair and recombination protein RADA; hydrola	98.22
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	98.22
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.22
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	98.22
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	98.2
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	98.2
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.2
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	98.19
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	98.16
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	98.15
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	98.15
3io5_A	333	Recombination and repair protein; storage dimer, i	98.15
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	98.15
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	98.14
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	98.14
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	98.13
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	98.12
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.12
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	98.11
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	98.11
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	98.1
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	98.09
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	98.09
2z43_A	324	DNA repair and recombination protein RADA; archaea	98.05
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	98.05
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.03
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	98.03
1xp8_A	366	RECA protein, recombinase A; recombination, radior	98.02
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	98.02
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.01
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	98.0
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.0
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	97.99
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.98
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.96
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	97.96
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.96
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.95
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	97.94
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	97.93
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.92
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	97.92
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	97.91
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	97.9
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	97.89
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.87
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.85
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	97.83
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.82
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.8
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	97.79
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.78
2r44_A	331	Uncharacterized protein; putative ATPase, structur	97.77
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	97.76
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	97.75
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.74
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	97.73
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.71
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.7
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.7
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.7
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.7
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.7
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.69
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	97.69
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.69
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	97.68
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.68
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.68
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	97.68
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	97.67
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.67
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.67
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	97.66
2r6a_A	454	DNAB helicase, replicative helicase; replication,	97.65
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.65
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.64
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	97.64
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.64
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	97.64
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.63
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.62
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	97.62
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	97.61
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.6
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.59
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.59
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.59
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.59
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	97.58
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.58
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.58
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	97.58
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	97.57
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.57
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	97.56
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.56
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.55
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.55
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	97.55
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.55
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.55
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	97.55
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.54
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.54
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	97.54
2fz4_A	237	DNA repair protein RAD25; RECA-like domain, DNA da	97.54
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	97.54
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.54
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	97.54
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.53
1tue_A	212	Replication protein E1; helicase, replication, E1E	97.53
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.52
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.52
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.51
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	97.51
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.51
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.51
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.5
3fwy_A	314	Light-independent protochlorophyllide reductase I	97.5
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	97.5
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.5
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	97.5
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.49
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	97.49
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.49
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.49
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.48
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	97.48
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.48
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.48
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	97.48
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.48
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.47
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.47
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.47
2hf9_A	226	Probable hydrogenase nickel incorporation protein	97.47
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.47
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.46
3ice_A	422	Transcription termination factor RHO; transcriptio	97.46
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	97.46
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.45
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	97.45
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.44
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.43
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.43
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.43
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.43
1via_A	175	Shikimate kinase; structural genomics, transferase	97.43
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.42
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.42
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.41
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.41
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.4
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.4
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.4
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.4
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.4
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	97.4
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.39
2xxa_A	433	Signal recognition particle protein; protein trans	97.39
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.39
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.38
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	97.38
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.38
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.38
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	97.38
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	97.38
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.37
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.36
2og2_A	359	Putative signal recognition particle receptor; nuc	97.36
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.36
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.36
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.36
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.36
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	97.36
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.36
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.36
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.36
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.34
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.34
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.34
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.33
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.33
1g6h_A	257	High-affinity branched-chain amino acid transport	97.33
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.33
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.32
3iqw_A	334	Tail-anchored protein targeting factor GET3; ATPas	97.32
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.31
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.31
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.31
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.3
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.3
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.29
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.29
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	97.29
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	97.29
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.28
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.28
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	97.28
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.28
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.27
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	97.27
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.27
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.26
3end_A	307	Light-independent protochlorophyllide reductase ir	97.26
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.26
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	97.26
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.25
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	97.25
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	97.23
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.23
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	97.23
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.23
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.22
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	97.22
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	97.22
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	97.2
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.17
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	97.17
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	97.17
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.17
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	97.16
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	97.16
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	97.15
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	97.14
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.14
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.14
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	97.14
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	97.13
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	97.13
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	97.12
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	97.12
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.12
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	97.11
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.11
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.11
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.11
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	97.1
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	97.1
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	97.08
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	97.08
1fx0_B	498	ATP synthase beta chain; latent ATPase, thermal st	97.07
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	97.07
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	97.06
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	97.04
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	97.03
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.03
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.02
2ck3_D	482	ATP synthase subunit beta\, mitochondrial; hydrola	97.02
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	97.02
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	97.01
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.01
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	97.0
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.99
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.99
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.99
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.99
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.98
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.98
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.98
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.97
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	96.97
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.97
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.94
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.92
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.91
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.91
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	96.89
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.89
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.89
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	96.89
2gk6_A	624	Regulator of nonsense transcripts 1; UPF1, helicas	96.88
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	96.87
3io3_A	348	DEHA2D07832P; chaperone, membrane traffic, ATPase;	96.87
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	96.86
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	96.86
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.85
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	96.84
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.83
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	96.83
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	96.82
2wji_A	165	Ferrous iron transport protein B homolog; membrane	96.8
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.79
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.78
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.76
1jr3_D	343	DNA polymerase III, delta subunit; processivity, p	96.75
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.74
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	96.72
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	96.71
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.71
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.7
2afh_E	289	Nitrogenase iron protein 1; nitrogen fixation, iro	96.69
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	96.68
3l0o_A	427	Transcription termination factor RHO; helicase, RH	96.68
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.67
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.67
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	96.66
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.65
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.63
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	96.63
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	96.63
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	96.62
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	96.61
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.61
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	96.6
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.6
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.6
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.59
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.58
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.58
2wjy_A	800	Regulator of nonsense transcripts 1; nonsense medi	96.58
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	96.58
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.57
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	96.57
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	96.56
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.56
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.55
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.55
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	96.54
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	96.53
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.53
2c61_A	469	A-type ATP synthase non-catalytic subunit B; hydro	96.52
2xzl_A	802	ATP-dependent helicase NAM7; hydrolase-RNA complex	96.52
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.51
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.51
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.51
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.5
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.5
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	96.5
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	96.5
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.5
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	96.5
3zq6_A	324	Putative arsenical pump-driving ATPase; tail-ancho	96.49
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	96.49
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	96.49
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.49
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	96.48
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	96.48
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.47
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	96.46
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	96.45
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	96.45
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.45
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.45
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	96.44
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	96.44
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	96.44
2woj_A	354	ATPase GET3; tail-anchored, membrane protein, targ	96.43
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.43
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	96.41
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	96.4
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.4
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.4
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	96.39
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	96.39
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.38
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	96.38
3vr4_D	465	V-type sodium ATPase subunit D; V-ATPase, rotary m	96.38
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	96.37
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	96.36
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	96.35
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	96.35
3gqb_B	464	V-type ATP synthase beta chain; A3B3, V-ATPase, AT	96.35
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	96.35
2r9v_A	515	ATP synthase subunit alpha; TM1612, structural gen	96.35
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.34
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	96.34
2woo_A	329	ATPase GET3; tail-anchored, membrane protein, targ	96.33
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	96.33
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	96.32
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	96.31
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	96.31
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	96.31
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	96.31
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	96.3
3fkq_A	373	NTRC-like two-domain protein; RER070207001320, str	96.3
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	96.29
1e69_A	322	Chromosome segregation SMC protein; structural mai	96.29
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	96.29
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	96.29
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	96.29
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	96.28
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	96.27
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	96.26
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	96.26
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	96.26
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	96.26
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	96.26
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	96.26
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	96.25
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	96.24
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	96.24
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	96.24
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	96.24
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	96.23
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	96.22
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	96.22
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	96.22
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	96.21
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	96.21
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	96.21
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	96.2
3ug7_A	349	Arsenical pump-driving ATPase; tail-anchored, memb	96.2
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	96.2
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	96.2
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	96.19
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.19
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	96.18

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=99.84  E-value=1.6e-20  Score=155.89  Aligned_cols=136  Identities=15%  Similarity=0.159  Sum_probs=102.9

Q ss_pred             cchHHHHHHHHHHhccC---CccEEEEEeCCCCcHHHHHHHHHh--HHhhhhcccceEEEEecCCc--CHHHHHHHHHHH
Q 035585           29 KSRLSTLKSIQDALTDV---NVNIVGVYGMGGIGKTTLVKEFAR--QASEEKLFDQVVFSEVSQTP--DIKKIHGEIAEK  101 (183)
Q Consensus        29 ~gR~~~l~~l~~~l~~~---~~~~v~i~G~~G~GKTtL~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~  101 (183)
                      +||+.+++.|.++|...   ..++++|+|++|+||||||+.+++  .......|+.++|++++...  +...+...++..
T Consensus       131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~  210 (549)
T 2a5y_B          131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM  210 (549)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence            49999999999998733   578999999999999999999997  23333468999999988875  678888999998


Q ss_pred             hCCCch--------hHHHHHHHHHHHHHHhcCC-eEEEEEeCCCCcccccccCcCCCCCCCCcEEEEEecChHHHhhcC
Q 035585          102 LGLEFS--------EEAESRRASRLYERLKKEK-MILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVLLNMS  171 (183)
Q Consensus       102 l~~~~~--------~~~~~~~~~~~~~~~~~~~-~~llvlD~~~~~~~~~~l~~~~~~~~~~~~iiitsr~~~~~~~~~  171 (183)
                      ++....        ..........+.+.+. ++ ++||||||+|+..++ .+.     ..+||+||||||+..+...++
T Consensus       211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~-~~kr~LlVLDdv~~~~~~-~~~-----~~~gs~ilvTTR~~~v~~~~~  282 (549)
T 2a5y_B          211 LKSEDDLLNFPSVEHVTSVVLKRMICNALI-DRPNTLFVFDDVVQEETI-RWA-----QELRLRCLVTTRDVEISNAAS  282 (549)
T ss_dssp             HTTTSCCTTCCCCTTCCHHHHHHHHHHHHT-TSTTEEEEEEEECCHHHH-HHH-----HHTTCEEEEEESBGGGGGGCC
T ss_pred             HhcCcccccccccccccHHHHHHHHHHHHc-CCCcEEEEEECCCCchhh-ccc-----ccCCCEEEEEcCCHHHHHHcC
Confidence            875421        1112223455556665 64 999999999987654 221     127999999999999887654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.77  E-value=1.9e-18  Score=154.03  Aligned_cols=141  Identities=25%  Similarity=0.315  Sum_probs=102.4

Q ss_pred             cCCCcccccchHHHHHHHHHHhc--cCCccEEEEEeCCCCcHHHHHHHHHhHHhh--hhcccceEEEEecCCc--CHHHH
Q 035585           21 SNKGYEAFKSRLSTLKSIQDALT--DVNVNIVGVYGMGGIGKTTLVKEFARQASE--EKLFDQVVFSEVSQTP--DIKKI   94 (183)
Q Consensus        21 ~~~~~~~~~gR~~~l~~l~~~l~--~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~   94 (183)
                      +|+++..|+||+++++.|.+.|.  +...++++|+|++|+||||||++++++...  ..++..++|++++...  .....
T Consensus       119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  198 (1249)
T 3sfz_A          119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMK  198 (1249)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHH
T ss_pred             CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHH
Confidence            56677889999999999999985  456789999999999999999999987643  2245678899998753  33444


Q ss_pred             HHHHHHHhCCCch-----hHHHHHHHHHHHHHHhc-CCeEEEEEeCCCCcccccccCcCCCCCCCCcEEEEEecChHHHh
Q 035585           95 HGEIAEKLGLEFS-----EEAESRRASRLYERLKK-EKMILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVLL  168 (183)
Q Consensus        95 ~~~i~~~l~~~~~-----~~~~~~~~~~~~~~~~~-~~~~llvlD~~~~~~~~~~l~~~~~~~~~~~~iiitsr~~~~~~  168 (183)
                      +..++..+.....     ..........+...+.. ++++||||||+|+..++..+       .+||+||+|||+..+..
T Consensus       199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~  271 (1249)
T 3sfz_A          199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTD  271 (1249)
T ss_dssp             HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTT
T ss_pred             HHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHH
Confidence            5666666644321     11223333444444431 34999999999987666543       56899999999998874

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=99.77  E-value=1e-18  Score=151.57  Aligned_cols=135  Identities=19%  Similarity=0.139  Sum_probs=98.7

Q ss_pred             cccchHHHHHHHHHHhcc-CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccc-eEEEEecCCcCHHHHHHHHHHHhCC
Q 035585           27 AFKSRLSTLKSIQDALTD-VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQ-VVFSEVSQTPDIKKIHGEIAEKLGL  104 (183)
Q Consensus        27 ~~~gR~~~l~~l~~~l~~-~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~l~~  104 (183)
                      ..+||+++++.|.++|.. ...++++|+|++|+||||||+.+++.......|.. ++|++++...+...+...++..+..
T Consensus       129 ~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~  208 (1221)
T 1vt4_I          129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ  208 (1221)
T ss_dssp             SCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhh
Confidence            359999999999999874 45789999999999999999999976544344665 9999999887777777776654311


Q ss_pred             ---C---------chhHHHHHHHHHHHHHH--hcCCeEEEEEeCCCCcccccccCcCCCCCCCCcEEEEEecChHHHh
Q 035585          105 ---E---------FSEEAESRRASRLYERL--KKEKMILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVLL  168 (183)
Q Consensus       105 ---~---------~~~~~~~~~~~~~~~~~--~~~~~~llvlD~~~~~~~~~~l~~~~~~~~~~~~iiitsr~~~~~~  168 (183)
                         .         ............+...+  ..++++||||||+|+...|..+       .+||+||||||+..++.
T Consensus       209 i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f-------~pGSRILVTTRd~~Va~  279 (1221)
T 1vt4_I          209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-------NLSCKILLTTRFKQVTD  279 (1221)
T ss_dssp             HCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH-------HSSCCEEEECSCSHHHH
T ss_pred             cCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh-------CCCeEEEEeccChHHHH
Confidence               0         01111222233344433  1379999999999997777654       16899999999999875

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=99.76  E-value=5.5e-18  Score=141.52  Aligned_cols=142  Identities=25%  Similarity=0.326  Sum_probs=98.9

Q ss_pred             cCCCcccccchHHHHHHHHHHhc--cCCccEEEEEeCCCCcHHHHHHHHHhHHhh-hhcc-cceEEEEecCCcC--HHHH
Q 035585           21 SNKGYEAFKSRLSTLKSIQDALT--DVNVNIVGVYGMGGIGKTTLVKEFARQASE-EKLF-DQVVFSEVSQTPD--IKKI   94 (183)
Q Consensus        21 ~~~~~~~~~gR~~~l~~l~~~l~--~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~-~~~~-~~~~~~~~~~~~~--~~~~   94 (183)
                      .|+.+..|+||+++++.|.+.+.  ....++++|+|++|+||||||..+++.... ...| ..++|++++....  ....
T Consensus       119 ~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~  198 (591)
T 1z6t_A          119 VPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMK  198 (591)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHH
T ss_pred             CCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHH
Confidence            46677889999999999999987  345789999999999999999999987643 3346 4799999876522  1222


Q ss_pred             HHHHHHHhCCC-----chhHHHHHHHHHHHHHHhc-CCeEEEEEeCCCCcccccccCcCCCCCCCCcEEEEEecChHHHh
Q 035585           95 HGEIAEKLGLE-----FSEEAESRRASRLYERLKK-EKMILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVLL  168 (183)
Q Consensus        95 ~~~i~~~l~~~-----~~~~~~~~~~~~~~~~~~~-~~~~llvlD~~~~~~~~~~l~~~~~~~~~~~~iiitsr~~~~~~  168 (183)
                      +..++..+...     ............+...+.. .++++|||||+|+...+..+       .++++||+|||+..+..
T Consensus       199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~  271 (591)
T 1z6t_A          199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTD  271 (591)
T ss_dssp             HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGT
T ss_pred             HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHH
Confidence            23334444421     1112223334445555543 37899999999976554432       46899999999998766


Q ss_pred             h
Q 035585          169 N  169 (183)
Q Consensus       169 ~  169 (183)
                      .
T Consensus       272 ~  272 (591)
T 1z6t_A          272 S  272 (591)
T ss_dssp             T
T ss_pred             h
Confidence            4

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=99.51  E-value=2.6e-14  Score=111.48  Aligned_cols=142  Identities=13%  Similarity=0.138  Sum_probs=89.8

Q ss_pred             hhhcCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCc------CH
Q 035585           18 WLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTP------DI   91 (183)
Q Consensus        18 ~~~~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~------~~   91 (183)
                      .+.|+..+..|+||+++++.|.+++.+.  +.++|+|++|+|||+|++.+.+..       .++|+++....      +.
T Consensus         4 ~~~~~~~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~-------~~~~~~~~~~~~~~~~~~~   74 (350)
T 2qen_A            4 DLRPKTRREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER-------PGILIDCRELYAERGHITR   74 (350)
T ss_dssp             CCSCCCSGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS-------SEEEEEHHHHHHTTTCBCH
T ss_pred             CCCCCCChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc-------CcEEEEeecccccccCCCH
Confidence            4456677788999999999999988653  799999999999999999998764       16777765432      45


Q ss_pred             HHHHHHHHHHhCCC-----------------ch--hHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcccc--------ccc
Q 035585           92 KKIHGEIAEKLGLE-----------------FS--EEAESRRASRLYERLKKEKMILVILDNIWKYLDL--------ETV  144 (183)
Q Consensus        92 ~~~~~~i~~~l~~~-----------------~~--~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~~--------~~l  144 (183)
                      ..++..+.+.+...                 .+  ..........+.......++.+|||||++....+        ..+
T Consensus        75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~  154 (350)
T 2qen_A           75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL  154 (350)
T ss_dssp             HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence            55666666554320                 00  0111122222323232224899999999876431        111


Q ss_pred             CcCCCCCCCCcEEEEEecChHHHh
Q 035585          145 GIPFGDDHRGCKLLLTARDCNVLL  168 (183)
Q Consensus       145 ~~~~~~~~~~~~iiitsr~~~~~~  168 (183)
                      +..+.+..++..+++|++...++.
T Consensus       155 L~~~~~~~~~~~~il~g~~~~~l~  178 (350)
T 2qen_A          155 FAYAYDSLPNLKIILTGSEVGLLH  178 (350)
T ss_dssp             HHHHHHHCTTEEEEEEESSHHHHH
T ss_pred             HHHHHHhcCCeEEEEECCcHHHHH
Confidence            111111224778999988766433

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=99.50  E-value=9.2e-14  Score=110.83  Aligned_cols=144  Identities=22%  Similarity=0.234  Sum_probs=95.3

Q ss_pred             CcccccchHHHHHHHHHHh-c----c--CCccEEEE--EeCCCCcHHHHHHHHHhHHhhhh----cccceEEEEecCCcC
Q 035585           24 GYEAFKSRLSTLKSIQDAL-T----D--VNVNIVGV--YGMGGIGKTTLVKEFARQASEEK----LFDQVVFSEVSQTPD   90 (183)
Q Consensus        24 ~~~~~~gR~~~l~~l~~~l-~----~--~~~~~v~i--~G~~G~GKTtL~~~~~~~~~~~~----~~~~~~~~~~~~~~~   90 (183)
                      .+..|+||+++++.|.+.+ .    .  ...+.+.|  +|++|+|||+|++.+++......    ....++|+++.....
T Consensus        20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (412)
T 1w5s_A           20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPN   99 (412)
T ss_dssp             CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred             CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCC
Confidence            4468999999999999988 4    2  35678888  99999999999999998876531    012367888777777


Q ss_pred             HHHHHHHHHHHhCCCchh--HHHHHHHHHHHHHHh-cCCeEEEEEeCCCCccc--------ccccCcCCCC-C--C--CC
Q 035585           91 IKKIHGEIAEKLGLEFSE--EAESRRASRLYERLK-KEKMILVILDNIWKYLD--------LETVGIPFGD-D--H--RG  154 (183)
Q Consensus        91 ~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~~~-~~~~~llvlD~~~~~~~--------~~~l~~~~~~-~--~--~~  154 (183)
                      ...++..++..++...+.  .........+...+. .+++.+|||||+|....        +..+...+.. .  .  ..
T Consensus       100 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~  179 (412)
T 1w5s_A          100 LYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNR  179 (412)
T ss_dssp             HHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCB
T ss_pred             HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCce
Confidence            888899999888654331  112223334444442 36799999999987532        2212122211 1  2  34


Q ss_pred             cEEEEEecChHHH
Q 035585          155 CKLLLTARDCNVL  167 (183)
Q Consensus       155 ~~iiitsr~~~~~  167 (183)
                      ..+|+|+++..+.
T Consensus       180 v~lI~~~~~~~~~  192 (412)
T 1w5s_A          180 IGFLLVASDVRAL  192 (412)
T ss_dssp             EEEEEEEEETHHH
T ss_pred             EEEEEEeccccHH
Confidence            5588788766543

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.50  E-value=7.8e-14  Score=110.02  Aligned_cols=146  Identities=16%  Similarity=0.228  Sum_probs=95.3

Q ss_pred             CCcccccchHHHHHHHHHHhc----cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhc-ccceEEEEecCCcCHHHHHHH
Q 035585           23 KGYEAFKSRLSTLKSIQDALT----DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKL-FDQVVFSEVSQTPDIKKIHGE   97 (183)
Q Consensus        23 ~~~~~~~gR~~~l~~l~~~l~----~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   97 (183)
                      ..+..|+||+.+++.+.+++.    ....+.++|+|++|+|||+|++.++..+..... ...++|+++........++..
T Consensus        17 ~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   96 (386)
T 2qby_A           17 YIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLAD   96 (386)
T ss_dssp             CCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHH
T ss_pred             cCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHH
Confidence            445789999999999999886    345678999999999999999999988765411 224678887766666777777


Q ss_pred             HHHHhCCCchh--HHHHHHHHHHHHHHhc-CCeEEEEEeCCCCccc------ccccCcCCCC-CCCCcEEEEEecChHHH
Q 035585           98 IAEKLGLEFSE--EAESRRASRLYERLKK-EKMILVILDNIWKYLD------LETVGIPFGD-DHRGCKLLLTARDCNVL  167 (183)
Q Consensus        98 i~~~l~~~~~~--~~~~~~~~~~~~~~~~-~~~~llvlD~~~~~~~------~~~l~~~~~~-~~~~~~iiitsr~~~~~  167 (183)
                      ++..++...+.  .........+...+.. +++.+|+|||++....      +..+...+.. ...+..+|+++++..+.
T Consensus        97 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~  176 (386)
T 2qby_A           97 LLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFV  176 (386)
T ss_dssp             HTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGG
T ss_pred             HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChH
Confidence            77766543221  1122333444444443 4589999999986531      2122111211 23356788888877654


Q ss_pred             h
Q 035585          168 L  168 (183)
Q Consensus       168 ~  168 (183)
                      .
T Consensus       177 ~  177 (386)
T 2qby_A          177 D  177 (386)
T ss_dssp             G
T ss_pred             h
Confidence            3

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.48  E-value=1.6e-13  Score=108.58  Aligned_cols=138  Identities=14%  Similarity=0.156  Sum_probs=91.6

Q ss_pred             ccccchHHHHHHHHHHhc----cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhc------ccceEEEEecCCc-CHHHH
Q 035585           26 EAFKSRLSTLKSIQDALT----DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKL------FDQVVFSEVSQTP-DIKKI   94 (183)
Q Consensus        26 ~~~~gR~~~l~~l~~~l~----~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~~~~   94 (183)
                      ..|+||+++++.+.+++.    ....+.++|+|++|+|||++++.+++.+.....      ...++|+++.... +...+
T Consensus        20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~   99 (384)
T 2qby_B           20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV   99 (384)
T ss_dssp             SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred             CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence            679999999999987765    345678999999999999999999988755311      3346788877666 77777


Q ss_pred             HHHHHHHh-CCCch--hHHHHHHHHHHHHHHhcCCeEEEEEeCCCCccc---ccc-cCcCCCCCCCCcEEEEEecChH
Q 035585           95 HGEIAEKL-GLEFS--EEAESRRASRLYERLKKEKMILVILDNIWKYLD---LET-VGIPFGDDHRGCKLLLTARDCN  165 (183)
Q Consensus        95 ~~~i~~~l-~~~~~--~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~---~~~-l~~~~~~~~~~~~iiitsr~~~  165 (183)
                      +..++..+ +...+  ..........+...+...+. +|+|||++.+..   .+. + ..+.....+..+|+||++..
T Consensus       100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~~~~~~l-~~l~~~~~~~~iI~~t~~~~  175 (384)
T 2qby_B          100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRRGGDIVL-YQLLRSDANISVIMISNDIN  175 (384)
T ss_dssp             HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHSTTSHHHH-HHHHTSSSCEEEEEECSSTT
T ss_pred             HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCCCCceeH-HHHhcCCcceEEEEEECCCc
Confidence            78888776 22111  11122334455555553444 999999987632   222 2 11111116778888888753

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=99.47  E-value=2.3e-13  Score=107.40  Aligned_cols=142  Identities=15%  Similarity=0.192  Sum_probs=95.8

Q ss_pred             CCcccccchHHHHHHHHHHhc----cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhh----cccceEEEEecCCcCHHHH
Q 035585           23 KGYEAFKSRLSTLKSIQDALT----DVNVNIVGVYGMGGIGKTTLVKEFARQASEEK----LFDQVVFSEVSQTPDIKKI   94 (183)
Q Consensus        23 ~~~~~~~gR~~~l~~l~~~l~----~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~   94 (183)
                      ..+..|+||+++++.+..++.    ....+.++|+|++|+|||++++.+++......    ....++|+++....+...+
T Consensus        16 ~~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   95 (387)
T 2v1u_A           16 YVPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRV   95 (387)
T ss_dssp             CCCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHH
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHH
Confidence            344789999999999999885    34567899999999999999999998875431    1234678888888888888


Q ss_pred             HHHHHHHhCCCchh--HHHHHHHHHHHHHHh-cCCeEEEEEeCCCCccc----ccccCcCC---CCC--CCCcEEEEEec
Q 035585           95 HGEIAEKLGLEFSE--EAESRRASRLYERLK-KEKMILVILDNIWKYLD----LETVGIPF---GDD--HRGCKLLLTAR  162 (183)
Q Consensus        95 ~~~i~~~l~~~~~~--~~~~~~~~~~~~~~~-~~~~~llvlD~~~~~~~----~~~l~~~~---~~~--~~~~~iiitsr  162 (183)
                      +..++..++...+.  .........+...+. .+++.+|+|||++....    .+.+...+   ...  ..+..+|.+++
T Consensus        96 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~  175 (387)
T 2v1u_A           96 ASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITN  175 (387)
T ss_dssp             HHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECS
T ss_pred             HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEEC
Confidence            89999888654332  112233444555553 25689999999997642    12221111   111  34556778877


Q ss_pred             Ch
Q 035585          163 DC  164 (183)
Q Consensus       163 ~~  164 (183)
                      +.
T Consensus       176 ~~  177 (387)
T 2v1u_A          176 SL  177 (387)
T ss_dssp             CS
T ss_pred             CC
Confidence            65

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=99.47  E-value=5.8e-13  Score=105.36  Aligned_cols=144  Identities=18%  Similarity=0.214  Sum_probs=97.3

Q ss_pred             CcccccchHHHHHHHHHHhcc----CCcc--EEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHH
Q 035585           24 GYEAFKSRLSTLKSIQDALTD----VNVN--IVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGE   97 (183)
Q Consensus        24 ~~~~~~gR~~~l~~l~~~l~~----~~~~--~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (183)
                      .+..++||+.+++.+..++..    ....  .++|+|++|+|||+|++.++....... ...++++++....+...++..
T Consensus        15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~   93 (389)
T 1fnn_A           15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGFIYRNFTAIIGE   93 (389)
T ss_dssp             CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETTTCCSHHHHHHH
T ss_pred             CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCccCCCHHHHHHH
Confidence            346799999999999988863    3334  899999999999999999998876531 124678888777777888888


Q ss_pred             HHHHhCCCchh--HHHHHHHHHHHHHHh-cCCeEEEEEeCCCCcc--cccccCcCCCCCC----CCcEEEEEecChHHHh
Q 035585           98 IAEKLGLEFSE--EAESRRASRLYERLK-KEKMILVILDNIWKYL--DLETVGIPFGDDH----RGCKLLLTARDCNVLL  168 (183)
Q Consensus        98 i~~~l~~~~~~--~~~~~~~~~~~~~~~-~~~~~llvlD~~~~~~--~~~~l~~~~~~~~----~~~~iiitsr~~~~~~  168 (183)
                      ++..++...+.  .........+...+. .+++.+|+|||++...  .+..+...+....    .+..+|+++++..+..
T Consensus        94 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~  173 (389)
T 1fnn_A           94 IARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN  173 (389)
T ss_dssp             HHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred             HHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence            88887653321  122233333443333 3568999999998763  2333323332211    3667888888776544

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=99.44  E-value=3e-13  Score=105.58  Aligned_cols=142  Identities=13%  Similarity=0.211  Sum_probs=86.7

Q ss_pred             hhhcCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC-----cCHH
Q 035585           18 WLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT-----PDIK   92 (183)
Q Consensus        18 ~~~~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~   92 (183)
                      .+.|+..+..|+||+++++.|.+ +..   ++++|+|++|+|||+|++.+.+....     ..+|+++...     .+..
T Consensus         5 ~~~~~~~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~   75 (357)
T 2fna_A            5 DTSPKDNRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNL-----PYIYLDLRKFEERNYISYK   75 (357)
T ss_dssp             CSSCCCSGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTC-----CEEEEEGGGGTTCSCCCHH
T ss_pred             CCCCCCCHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCC-----CEEEEEchhhccccCCCHH
Confidence            34566677889999999999999 755   69999999999999999999887542     2577777642     2334


Q ss_pred             HHHHHHHHHhCC------------------Cchh-----H---HHHHHHHHHHHHHhcC--CeEEEEEeCCCCccc----
Q 035585           93 KIHGEIAEKLGL------------------EFSE-----E---AESRRASRLYERLKKE--KMILVILDNIWKYLD----  140 (183)
Q Consensus        93 ~~~~~i~~~l~~------------------~~~~-----~---~~~~~~~~~~~~~~~~--~~~llvlD~~~~~~~----  140 (183)
                      .++..+.+.+..                  ..+.     .   ........+...+...  ++.+|||||++....    
T Consensus        76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~  155 (357)
T 2fna_A           76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGV  155 (357)
T ss_dssp             HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTC
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCch
Confidence            444444333210                  0000     0   0011123344444321  489999999987542    


Q ss_pred             -ccccCcCCCCCCCCcEEEEEecChHHHh
Q 035585          141 -LETVGIPFGDDHRGCKLLLTARDCNVLL  168 (183)
Q Consensus       141 -~~~l~~~~~~~~~~~~iiitsr~~~~~~  168 (183)
                       +..++..+.+...+..+|+|++......
T Consensus       156 ~~~~~l~~~~~~~~~~~~i~~g~~~~~l~  184 (357)
T 2fna_A          156 NLLPALAYAYDNLKRIKFIMSGSEMGLLY  184 (357)
T ss_dssp             CCHHHHHHHHHHCTTEEEEEEESSHHHHH
T ss_pred             hHHHHHHHHHHcCCCeEEEEEcCchHHHH
Confidence             1111122222224678999999876543

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=99.44  E-value=1.1e-12  Score=95.63  Aligned_cols=133  Identities=14%  Similarity=0.160  Sum_probs=85.2

Q ss_pred             hhhhhcCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHH
Q 035585           16 EVWLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIH   95 (183)
Q Consensus        16 ~~~~~~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (183)
                      +....+|.....++||++.++.+..++...+.+.++|+|++|+|||++++.+++.+.........+.+++........+.
T Consensus         7 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (226)
T 2chg_A            7 WVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVR   86 (226)
T ss_dssp             HHHHTSCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHH
T ss_pred             HHHhcCCCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHH
Confidence            33445667778899999999999999986666669999999999999999999887554222334445544433322211


Q ss_pred             HHHHHHhCCCchhHHHHHHHHHHHHH--HhcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecChH
Q 035585           96 GEIAEKLGLEFSEEAESRRASRLYER--LKKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDCN  165 (183)
Q Consensus        96 ~~i~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~~  165 (183)
                      ..+.                 .....  ....++.+|+|||++...  ....+...+.....++.+|+|++...
T Consensus        87 ~~~~-----------------~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~  143 (226)
T 2chg_A           87 HKIK-----------------EFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVS  143 (226)
T ss_dssp             HHHH-----------------HHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred             HHHH-----------------HHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence            1111                 11100  112578999999998763  23334333434455677888887653

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=99.39  E-value=1.4e-12  Score=101.04  Aligned_cols=113  Identities=11%  Similarity=0.089  Sum_probs=81.2

Q ss_pred             ccchHHHHHHHHHHhc----cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhc-----ccceEEEEecCCcCHHHHHHHH
Q 035585           28 FKSRLSTLKSIQDALT----DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKL-----FDQVVFSEVSQTPDIKKIHGEI   98 (183)
Q Consensus        28 ~~gR~~~l~~l~~~l~----~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i   98 (183)
                      +.+|++|++.+...+.    ...++.+.|+|++|+|||++++.++..+.....     .-.++++++....+...++..|
T Consensus        22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I  101 (318)
T 3te6_A           22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI  101 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence            6799999999998776    567789999999999999999999999865311     1136788888888888888999


Q ss_pred             HHHhCCCchh-HHHHHHHHHHHHHH--hcCCeEEEEEeCCCCccc
Q 035585           99 AEKLGLEFSE-EAESRRASRLYERL--KKEKMILVILDNIWKYLD  140 (183)
Q Consensus        99 ~~~l~~~~~~-~~~~~~~~~~~~~~--~~~~~~llvlD~~~~~~~  140 (183)
                      ++++...... ......+..++..+  ...++.+++|||+|.+.+
T Consensus       102 ~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~  146 (318)
T 3te6_A          102 WFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLS  146 (318)
T ss_dssp             HHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCC
T ss_pred             HHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhc
Confidence            9988543211 11223344444443  236789999999998753

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=99.34  E-value=8e-12  Score=92.02  Aligned_cols=143  Identities=12%  Similarity=0.160  Sum_probs=81.3

Q ss_pred             hhhhhcCCCcccccchHHHHHHHHHHhccC-CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHH
Q 035585           16 EVWLKSNKGYEAFKSRLSTLKSIQDALTDV-NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKI   94 (183)
Q Consensus        16 ~~~~~~~~~~~~~~gR~~~l~~l~~~l~~~-~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (183)
                      ......|.....++||+.+++.+..++... ..+.++|+|++|+|||++++.+++.+.........   .+..   ... 
T Consensus        13 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~---~~~~---~~~-   85 (250)
T 1njg_A           13 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT---PCGV---CDN-   85 (250)
T ss_dssp             HHHHTCCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSS---CCSC---SHH-
T ss_pred             HhhccCCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC---CCcc---cHH-
Confidence            344455666778999999999999988743 34689999999999999999999877543111000   0000   000 


Q ss_pred             HHHHHHHhC-----CCchhHHHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecC
Q 035585           95 HGEIAEKLG-----LEFSEEAESRRASRLYERLK----KEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARD  163 (183)
Q Consensus        95 ~~~i~~~l~-----~~~~~~~~~~~~~~~~~~~~----~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~  163 (183)
                      ...+.....     ..............+...+.    ..++.+|||||++...  .+..+...+.....++.+|+++++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~  165 (250)
T 1njg_A           86 CREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD  165 (250)
T ss_dssp             HHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESC
T ss_pred             HHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCC
Confidence            001100000     00000011112222333221    2467999999998753  344444444444567788888876


Q ss_pred             hH
Q 035585          164 CN  165 (183)
Q Consensus       164 ~~  165 (183)
                      ..
T Consensus       166 ~~  167 (250)
T 1njg_A          166 PQ  167 (250)
T ss_dssp             GG
T ss_pred             hH
Confidence            54

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=99.31  E-value=2.3e-11  Score=86.53  Aligned_cols=106  Identities=15%  Similarity=0.210  Sum_probs=68.7

Q ss_pred             hcCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhc-----ccceEEEEecCCcCHHHH
Q 035585           20 KSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKL-----FDQVVFSEVSQTPDIKKI   94 (183)
Q Consensus        20 ~~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~   94 (183)
                      ..+.....++||+++++.+.+.+.....+.++|+|++|+|||++++.+++.+.....     ...++++++..       
T Consensus        16 ~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------   88 (195)
T 1jbk_A           16 AEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA-------   88 (195)
T ss_dssp             HHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH-------
T ss_pred             HhhccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH-------
Confidence            345667789999999999999988766788999999999999999999988754211     11234443321       


Q ss_pred             HHHHHHHhCCCchhHHHHHHHHHHHHHH-hcCCeEEEEEeCCCCc
Q 035585           95 HGEIAEKLGLEFSEEAESRRASRLYERL-KKEKMILVILDNIWKY  138 (183)
Q Consensus        95 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~llvlD~~~~~  138 (183)
                         +.   ...............+...+ ...++.+|+|||++.+
T Consensus        89 ---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l  127 (195)
T 1jbk_A           89 ---LV---AGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTM  127 (195)
T ss_dssp             ---HH---TTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGG
T ss_pred             ---Hh---ccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHH
Confidence               00   00000111122233333333 3366889999999876

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.28  E-value=8e-12  Score=96.41  Aligned_cols=133  Identities=20%  Similarity=0.150  Sum_probs=84.3

Q ss_pred             hhhhhcCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHH
Q 035585           16 EVWLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIH   95 (183)
Q Consensus        16 ~~~~~~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (183)
                      ......|.....++||+..++.+.+++.+.+.+.++++|++|+|||++++.+++.+........+++++.+....... .
T Consensus        11 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-i   89 (323)
T 1sxj_B           11 WVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDV-V   89 (323)
T ss_dssp             HHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHH-H
T ss_pred             HHHhcCCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHH-H
Confidence            344455666788999999999999998866655699999999999999999998875432222344555443322211 1


Q ss_pred             HHHHHHhCCCchhHHHHHHHHHHHH---HHhcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecChH
Q 035585           96 GEIAEKLGLEFSEEAESRRASRLYE---RLKKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDCN  165 (183)
Q Consensus        96 ~~i~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~~  165 (183)
                      +.+++.                +..   .+..+++.+|||||++.+.  ..+.+...+.....++.+|+++.+..
T Consensus        90 ~~~~~~----------------~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~  148 (323)
T 1sxj_B           90 RNQIKH----------------FAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSN  148 (323)
T ss_dssp             HTHHHH----------------HHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGG
T ss_pred             HHHHHH----------------HHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChh
Confidence            111111                110   0102458999999998763  34444444444456778888887643

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=99.21  E-value=2.7e-11  Score=93.61  Aligned_cols=133  Identities=14%  Similarity=0.121  Sum_probs=83.1

Q ss_pred             hhhhhcCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHH
Q 035585           16 EVWLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIH   95 (183)
Q Consensus        16 ~~~~~~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (183)
                      +.....|.....++|++..++.+.+++.+.+.+.++++|++|+|||++++.+++.+........++.++++.......+ 
T Consensus        15 ~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-   93 (327)
T 1iqp_A           15 WVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVI-   93 (327)
T ss_dssp             HHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTT-
T ss_pred             hhhccCCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHH-
Confidence            4444566777889999999999999988666666999999999999999999988754321122344443321111000 


Q ss_pred             HHHHHHhCCCchhHHHHHHHHHHHHH--HhcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecChH
Q 035585           96 GEIAEKLGLEFSEEAESRRASRLYER--LKKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDCN  165 (183)
Q Consensus        96 ~~i~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~~  165 (183)
                      ..                ........  +...++.+|++||++.+.  ..+.+...+.....++++|+++....
T Consensus        94 ~~----------------~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~  151 (327)
T 1iqp_A           94 RE----------------KVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSS  151 (327)
T ss_dssp             HH----------------HHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred             HH----------------HHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCcc
Confidence            00                00111110  112568899999998763  34444444444455778888886643

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=99.18  E-value=1.5e-10  Score=82.09  Aligned_cols=54  Identities=19%  Similarity=0.225  Sum_probs=46.7

Q ss_pred             hcCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           20 KSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        20 ~~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      ..+.....++||+.++..+.+.+.+...+.++|+|++|+|||++++.+++.+..
T Consensus        16 ~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~   69 (187)
T 2p65_A           16 ARAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ   69 (187)
T ss_dssp             HHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred             HhccccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence            345566789999999999999988766788999999999999999999988754

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=99.17  E-value=8e-11  Score=90.61  Aligned_cols=131  Identities=12%  Similarity=0.163  Sum_probs=82.9

Q ss_pred             hhhcCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHH
Q 035585           18 WLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGE   97 (183)
Q Consensus        18 ~~~~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (183)
                      ....|.....++|++..++.+.+++.+.+.+.++++|++|+|||++++.+++.+.........+.++++.......+.  
T Consensus         9 ~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--   86 (319)
T 2chq_A            9 EKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVR--   86 (319)
T ss_dssp             TTTSCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSS--
T ss_pred             HhcCCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHH--
Confidence            334566667899999999999999886665569999999999999999999887433111224455554422111000  


Q ss_pred             HHHHhCCCchhHHHHHHHHHHHHH--HhcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecChH
Q 035585           98 IAEKLGLEFSEEAESRRASRLYER--LKKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDCN  165 (183)
Q Consensus        98 i~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~~  165 (183)
                                     .........  +...++.+++|||++.+.  ..+.+...+.....++.+|+++....
T Consensus        87 ---------------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~  143 (319)
T 2chq_A           87 ---------------HKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVS  143 (319)
T ss_dssp             ---------------HHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGG
T ss_pred             ---------------HHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence                           000111101  112568899999998763  34555555555556778888876544

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=99.02  E-value=6.8e-10  Score=84.42  Aligned_cols=98  Identities=18%  Similarity=0.236  Sum_probs=63.8

Q ss_pred             cCCCcccccchHHHHHHHHHHhcc-------------CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585           21 SNKGYEAFKSRLSTLKSIQDALTD-------------VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ   87 (183)
Q Consensus        21 ~~~~~~~~~gR~~~l~~l~~~l~~-------------~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~   87 (183)
                      |......++|.+..++.|.+.+..             .....++|+|++|+|||+|++.++..+...     .+.+++..
T Consensus        12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~-----~~~v~~~~   86 (285)
T 3h4m_A           12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNAT-----FIRVVGSE   86 (285)
T ss_dssp             CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCE-----EEEEEGGG
T ss_pred             CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehHH
Confidence            344566789999999999887642             456789999999999999999998875432     23333322


Q ss_pred             CcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585           88 TPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY  138 (183)
Q Consensus        88 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~  138 (183)
                      ...              .... ........++.......+.+|+|||++.+
T Consensus        87 ~~~--------------~~~~-~~~~~~~~~~~~~~~~~~~vl~iDEid~l  122 (285)
T 3h4m_A           87 LVK--------------KFIG-EGASLVKDIFKLAKEKAPSIIFIDEIDAI  122 (285)
T ss_dssp             GCC--------------CSTT-HHHHHHHHHHHHHHHTCSEEEEEETTHHH
T ss_pred             HHH--------------hccc-hHHHHHHHHHHHHHHcCCeEEEEECHHHh
Confidence            111              0111 11223344444454467789999999764

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=99.02  E-value=9.7e-10  Score=86.42  Aligned_cols=56  Identities=14%  Similarity=0.171  Sum_probs=45.7

Q ss_pred             hhhcCCCcccccchHHHHHHHHHHhccCC-ccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           18 WLKSNKGYEAFKSRLSTLKSIQDALTDVN-VNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        18 ~~~~~~~~~~~~gR~~~l~~l~~~l~~~~-~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      ....|.....++||+..++.+.+.+...+ .+.++|+|++|+|||++++.++..+..
T Consensus         8 ~k~rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~   64 (373)
T 1jr3_A            8 RKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC   64 (373)
T ss_dssp             HHTCCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred             HhhCCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            34455566779999999999999887443 467899999999999999999887754

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.01  E-value=3.5e-10  Score=88.35  Aligned_cols=144  Identities=13%  Similarity=0.111  Sum_probs=81.1

Q ss_pred             hhhhhcCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhh-cccceEEEEecCCcCHHHH
Q 035585           16 EVWLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEK-LFDQVVFSEVSQTPDIKKI   94 (183)
Q Consensus        16 ~~~~~~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   94 (183)
                      +.....|.....++|++..++.+..++.....+.++|+|++|+|||++++.++..+.... ....+..++++.......+
T Consensus        27 ~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~  106 (353)
T 1sxj_D           27 WVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV  106 (353)
T ss_dssp             HHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH
T ss_pred             HHHhcCCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH
Confidence            344456677788999999999999998866555599999999999999999999875321 1122444444433232221


Q ss_pred             HHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecCh
Q 035585           95 HGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDC  164 (183)
Q Consensus        95 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~  164 (183)
                       ......+.........    ..........+..+|+|||++.+.  ....+...+......+++|+++...
T Consensus       107 -~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~  173 (353)
T 1sxj_D          107 -REKVKNFARLTVSKPS----KHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYV  173 (353)
T ss_dssp             -TTHHHHHHHSCCCCCC----TTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred             -HHHHHHHhhhcccccc----hhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCch
Confidence             1111111000000000    000011112456799999998763  2333433333334456677776543

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=98.99  E-value=4.2e-09  Score=85.28  Aligned_cols=66  Identities=21%  Similarity=0.224  Sum_probs=48.6

Q ss_pred             ccccccchhhhhhcCCCcccccchHHHH---HHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585            8 IFYRTIAEEVWLKSNKGYEAFKSRLSTL---KSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~gR~~~l---~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      ++.....+......|.....++|.+..+   ..|...+...+.+.++|+|++|+||||+|+.+++....
T Consensus         8 ~~~~~~~pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~   76 (447)
T 3pvs_A            8 FSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANA   76 (447)
T ss_dssp             ------CCHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             hcccccCChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCC
Confidence            3333333344445567778899999998   78888887777789999999999999999999987643

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=98.98  E-value=2.4e-10  Score=78.68  Aligned_cols=110  Identities=12%  Similarity=0.069  Sum_probs=63.9

Q ss_pred             cccchHHHHHHHHHHhc--cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCC
Q 035585           27 AFKSRLSTLKSIQDALT--DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGL  104 (183)
Q Consensus        27 ~~~gR~~~l~~l~~~l~--~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~  104 (183)
                      .++|+...+..+.+.+.  ......++|+|++|+|||++|+.+++.....  ....+ +++.......            
T Consensus         2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~--~~~~v-~~~~~~~~~~------------   66 (145)
T 3n70_A            2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNA--QGEFV-YRELTPDNAP------------   66 (145)
T ss_dssp             --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTT--TSCCE-EEECCTTTSS------------
T ss_pred             CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCcc--CCCEE-EECCCCCcch------------
Confidence            57888888888888765  3344678999999999999999998765432  11233 6665432220            


Q ss_pred             CchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecC
Q 035585          105 EFSEEAESRRASRLYERLKKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARD  163 (183)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~  163 (183)
                           .    ........   ..-+|+|||++.+.  ....+...+.......++|.||..
T Consensus        67 -----~----~~~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~  115 (145)
T 3n70_A           67 -----Q----LNDFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT  115 (145)
T ss_dssp             -----C----HHHHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred             -----h----hhcHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence                 0    01111111   23478999998763  222333333333334566666653

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=98.96  E-value=1.2e-08  Score=77.21  Aligned_cols=125  Identities=18%  Similarity=0.191  Sum_probs=69.9

Q ss_pred             ccccchHHHHHHHHH-------Hhc---cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHH
Q 035585           26 EAFKSRLSTLKSIQD-------ALT---DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIH   95 (183)
Q Consensus        26 ~~~~gR~~~l~~l~~-------~l~---~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (183)
                      .+++++...++.+..       .+.   ....+.++|+|++|+|||++|+.+++....     ..+.++++..       
T Consensus        33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~-----~~~~i~~~~~-------  100 (272)
T 1d2n_A           33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNF-----PFIKICSPDK-------  100 (272)
T ss_dssp             TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTC-----SEEEEECGGG-------
T ss_pred             cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCC-----CEEEEeCHHH-------
Confidence            456777666655555       222   455678999999999999999999987432     2233343321       


Q ss_pred             HHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcc------------cccccCcCCCC---CCCCcEEEEE
Q 035585           96 GEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKYL------------DLETVGIPFGD---DHRGCKLLLT  160 (183)
Q Consensus        96 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~------------~~~~l~~~~~~---~~~~~~iiit  160 (183)
                            +.. ............++......+..+|+|||++.+.            .+..+...+..   ......+|.|
T Consensus       101 ------~~g-~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~t  173 (272)
T 1d2n_A          101 ------MIG-FSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGT  173 (272)
T ss_dssp             ------CTT-CCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEE
T ss_pred             ------hcC-CchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEe
Confidence                  111 1111111223344444444678999999987541            01222222221   2334557778


Q ss_pred             ecChHHHhh
Q 035585          161 ARDCNVLLN  169 (183)
Q Consensus       161 sr~~~~~~~  169 (183)
                      |...+.+..
T Consensus       174 tn~~~~l~~  182 (272)
T 1d2n_A          174 TSRKDVLQE  182 (272)
T ss_dssp             ESCHHHHHH
T ss_pred             cCChhhcch
Confidence            877766554

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=98.96  E-value=1.1e-09  Score=84.84  Aligned_cols=129  Identities=11%  Similarity=0.083  Sum_probs=80.3

Q ss_pred             chhhhhhcCCCcccccchHHHHHHHHHHhccCC-ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHH
Q 035585           14 AEEVWLKSNKGYEAFKSRLSTLKSIQDALTDVN-VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIK   92 (183)
Q Consensus        14 ~~~~~~~~~~~~~~~~gR~~~l~~l~~~l~~~~-~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (183)
                      .++.....|.....++|++..+..+.+++...+ ++.++++|++|+|||++++.+++.+..     .+++++++... . 
T Consensus        14 ~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~-----~~~~i~~~~~~-~-   86 (324)
T 3u61_B           14 HILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNA-----DMMFVNGSDCK-I-   86 (324)
T ss_dssp             SSHHHHSCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTE-----EEEEEETTTCC-H-
T ss_pred             chHHHhhCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCC-----CEEEEcccccC-H-
Confidence            345555567778889999999999999988544 356777888999999999999887632     24555544321 1 


Q ss_pred             HHHHHHHHHhCCCchhHHHHHHHHHHHHHH-hcCCeEEEEEeCCCCcc---cccccCcCCCCCCCCcEEEEEecChH
Q 035585           93 KIHGEIAEKLGLEFSEEAESRRASRLYERL-KKEKMILVILDNIWKYL---DLETVGIPFGDDHRGCKLLLTARDCN  165 (183)
Q Consensus        93 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~llvlD~~~~~~---~~~~l~~~~~~~~~~~~iiitsr~~~  165 (183)
                      .....++.                ...... ..++..+|+|||++.+.   ..+.+...+......+.+|+|+....
T Consensus        87 ~~i~~~~~----------------~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~  147 (324)
T 3u61_B           87 DFVRGPLT----------------NFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID  147 (324)
T ss_dssp             HHHHTHHH----------------HHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred             HHHHHHHH----------------HHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence            11111111                111111 01478999999999775   23333333333334567888877644

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.94  E-value=1.5e-09  Score=84.95  Aligned_cols=53  Identities=15%  Similarity=0.149  Sum_probs=43.7

Q ss_pred             hhcCCCcccccchHHHHHHHHHHh-ccCCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           19 LKSNKGYEAFKSRLSTLKSIQDAL-TDVNVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        19 ~~~~~~~~~~~gR~~~l~~l~~~l-~~~~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      ...|.....++|++..++.+.+++ ...+.+.++|+|++|+||||+++.++..+
T Consensus         7 kyrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l   60 (354)
T 1sxj_E            7 KYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI   60 (354)
T ss_dssp             TTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred             ccCCCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            345566678999999999999988 65544449999999999999999999865

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=98.94  E-value=7.5e-09  Score=77.50  Aligned_cols=95  Identities=15%  Similarity=0.172  Sum_probs=56.8

Q ss_pred             CcccccchHHHHHHHHHHhc---c---------CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCH
Q 035585           24 GYEAFKSRLSTLKSIQDALT---D---------VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDI   91 (183)
Q Consensus        24 ~~~~~~gR~~~l~~l~~~l~---~---------~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (183)
                      ....++|.+.....+.+.+.   .         ...+.++|+|++|+|||++|+.++.....     ..+++++..-...
T Consensus         4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~-----~~~~~~~~~~~~~   78 (262)
T 2qz4_A            4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQV-----PFLAMAGAEFVEV   78 (262)
T ss_dssp             CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTC-----CEEEEETTTTSSS
T ss_pred             CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEechHHHHhh
Confidence            44567788777777766542   1         34467899999999999999999987542     2344444432110


Q ss_pred             HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585           92 KKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY  138 (183)
Q Consensus        92 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~  138 (183)
                                    ... ........++.......+.+|+|||++.+
T Consensus        79 --------------~~~-~~~~~~~~~~~~a~~~~~~vl~iDeid~l  110 (262)
T 2qz4_A           79 --------------IGG-LGAARVRSLFKEARARAPCIVYIDEIDAV  110 (262)
T ss_dssp             --------------STT-HHHHHHHHHHHHHHHTCSEEEEEECC---
T ss_pred             --------------ccC-hhHHHHHHHHHHHHhcCCeEEEEeCcchh
Confidence                          001 11122334444444466889999999875

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.91  E-value=2.8e-09  Score=83.18  Aligned_cols=133  Identities=13%  Similarity=0.117  Sum_probs=79.1

Q ss_pred             hhhhhhcCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHH
Q 035585           15 EEVWLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKI   94 (183)
Q Consensus        15 ~~~~~~~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (183)
                      ++.....|.....++|.+..++.|...+...+.+.++++|++|+||||+++.++..+........+..++.+.......+
T Consensus        14 ~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~i   93 (340)
T 1sxj_C           14 PWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVV   93 (340)
T ss_dssp             CHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHH
T ss_pred             chHHHhCCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHH
Confidence            34445567777888999999999999888665555999999999999999999998754321112333343332222111


Q ss_pred             HHHHHHHhCCCchhHHHHHHHHHHHHHH--hcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecCh
Q 035585           95 HGEIAEKLGLEFSEEAESRRASRLYERL--KKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDC  164 (183)
Q Consensus        95 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~  164 (183)
                      . ...                ..+.+..  ...+..++|+||++.+.  ..+.+...+......+.+|+++...
T Consensus        94 r-~~i----------------~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~  150 (340)
T 1sxj_C           94 R-NQI----------------KDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYA  150 (340)
T ss_dssp             H-THH----------------HHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred             H-HHH----------------HHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCc
Confidence            1 111                0111000  01347899999998653  2333333333334456677776543

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=98.91  E-value=6.2e-09  Score=80.73  Aligned_cols=99  Identities=18%  Similarity=0.288  Sum_probs=64.4

Q ss_pred             hcCCCcccccchHHHHHHHHHHhc------------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585           20 KSNKGYEAFKSRLSTLKSIQDALT------------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ   87 (183)
Q Consensus        20 ~~~~~~~~~~gR~~~l~~l~~~l~------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~   87 (183)
                      .|......++|.+...+.|.+++.            ....+.++|+|++|+|||+||+.+++.....     .+.++++.
T Consensus        12 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~-----~~~v~~~~   86 (322)
T 3eie_A           12 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST-----FFSVSSSD   86 (322)
T ss_dssp             CCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCE-----EEEEEHHH
T ss_pred             CCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCC-----EEEEchHH
Confidence            344556678999999999988762            2234679999999999999999998875432     23333321


Q ss_pred             CcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585           88 TPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY  138 (183)
Q Consensus        88 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~  138 (183)
                                +...    ... ........++......++.+|+|||++.+
T Consensus        87 ----------l~~~----~~g-~~~~~~~~~f~~a~~~~~~vl~iDEid~l  122 (322)
T 3eie_A           87 ----------LVSK----WMG-ESEKLVKQLFAMARENKPSIIFIDQVDAL  122 (322)
T ss_dssp             ----------HHTT----TGG-GHHHHHHHHHHHHHHTSSEEEEEECGGGG
T ss_pred             ----------Hhhc----ccc-hHHHHHHHHHHHHHhcCCeEEEechhhhh
Confidence                      1110    111 12233445555555577889999999865

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=98.90  E-value=4.7e-09  Score=80.59  Aligned_cols=48  Identities=17%  Similarity=0.154  Sum_probs=38.3

Q ss_pred             cccchHHHHHHHHHHhc---------------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           27 AFKSRLSTLKSIQDALT---------------DVNVNIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        27 ~~~gR~~~l~~l~~~l~---------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      .++|.+...+.+.+.+.               ......++|+|++|+|||++|+.+++.+...
T Consensus        32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~   94 (309)
T 3syl_A           32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRL   94 (309)
T ss_dssp             HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred             HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            57888888888876543               2344579999999999999999999888654

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.89  E-value=2.5e-09  Score=76.01  Aligned_cols=117  Identities=15%  Similarity=0.114  Sum_probs=63.0

Q ss_pred             hHHHHHHHHHHhcc---CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCch
Q 035585           31 RLSTLKSIQDALTD---VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFS  107 (183)
Q Consensus        31 R~~~l~~l~~~l~~---~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~  107 (183)
                      ++..++.+.++..+   .+...++|+|++|+|||||++.++..+.... ...++|++.      .++...+...+.....
T Consensus        19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~-g~~~~~~~~------~~~~~~~~~~~~~~~~   91 (180)
T 3ec2_A           19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKK-GIRGYFFDT------KDLIFRLKHLMDEGKD   91 (180)
T ss_dssp             HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHS-CCCCCEEEH------HHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHc-CCeEEEEEH------HHHHHHHHHHhcCchH
Confidence            45555556555542   3457899999999999999999999886431 112344332      2333333222211100


Q ss_pred             hHHHHHHHHHHHHHHhcCCeEEEEEeCCCC--cccc--cccCcCCCC-CCCCcEEEEEecCh
Q 035585          108 EEAESRRASRLYERLKKEKMILVILDNIWK--YLDL--ETVGIPFGD-DHRGCKLLLTARDC  164 (183)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~llvlD~~~~--~~~~--~~l~~~~~~-~~~~~~iiitsr~~  164 (183)
                              ..+...+  .+.-+|||||++.  .+.+  ..+...+.. ...+..+|+||+..
T Consensus        92 --------~~~~~~~--~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~  143 (180)
T 3ec2_A           92 --------TKFLKTV--LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS  143 (180)
T ss_dssp             --------SHHHHHH--HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred             --------HHHHHHh--cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence                    0222223  2567999999973  2221  112121211 12456788888743

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=98.86  E-value=9.8e-09  Score=81.63  Aligned_cols=98  Identities=12%  Similarity=0.203  Sum_probs=62.4

Q ss_pred             cCCCcccccchHHHHHHHHHHhc------------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC
Q 035585           21 SNKGYEAFKSRLSTLKSIQDALT------------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT   88 (183)
Q Consensus        21 ~~~~~~~~~gR~~~l~~l~~~l~------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~   88 (183)
                      ++.....++|++..++.|.+++.            ....+.++|+|++|+|||+||+.++.....     ..+.+++...
T Consensus       110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~-----~~~~v~~~~l  184 (389)
T 3vfd_A          110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA-----TFFNISAASL  184 (389)
T ss_dssp             CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEECSCCC
T ss_pred             CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC-----cEEEeeHHHh
Confidence            44556788999999999998773            223578999999999999999999876432     2334444332


Q ss_pred             cCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585           89 PDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY  138 (183)
Q Consensus        89 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~  138 (183)
                      ....         .+      ........++.......+.+|+|||++.+
T Consensus       185 ~~~~---------~g------~~~~~~~~~~~~a~~~~~~il~iDEid~l  219 (389)
T 3vfd_A          185 TSKY---------VG------EGEKLVRALFAVARELQPSIIFIDQVDSL  219 (389)
T ss_dssp             ----------------------CHHHHHHHHHHHHHSSSEEEEEETGGGG
T ss_pred             hccc---------cc------hHHHHHHHHHHHHHhcCCeEEEEECchhh
Confidence            1110         00      00122334444444466789999999865

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=98.86  E-value=1.5e-08  Score=79.69  Aligned_cols=98  Identities=14%  Similarity=0.170  Sum_probs=63.5

Q ss_pred             cCCCcccccchHHHHHHHHHHhc------------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC
Q 035585           21 SNKGYEAFKSRLSTLKSIQDALT------------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT   88 (183)
Q Consensus        21 ~~~~~~~~~gR~~~l~~l~~~l~------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~   88 (183)
                      ++.....++|.+..++.|.+.+.            ......++|+|++|+|||+||+.++.....     ..++++++..
T Consensus        79 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~-----~~~~i~~~~l  153 (357)
T 3d8b_A           79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGA-----TFFSISASSL  153 (357)
T ss_dssp             CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTC-----EEEEEEGGGG
T ss_pred             CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCC-----eEEEEehHHh
Confidence            44455678999999999988763            234678999999999999999999886532     2344554422


Q ss_pred             cCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585           89 PDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY  138 (183)
Q Consensus        89 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~  138 (183)
                      ..              .... ........++......++.+|+|||++.+
T Consensus       154 ~~--------------~~~g-~~~~~~~~~~~~a~~~~~~vl~iDEid~l  188 (357)
T 3d8b_A          154 TS--------------KWVG-EGEKMVRALFAVARCQQPAVIFIDEIDSL  188 (357)
T ss_dssp             CC--------------SSTT-HHHHHHHHHHHHHHHTCSEEEEEETHHHH
T ss_pred             hc--------------cccc-hHHHHHHHHHHHHHhcCCeEEEEeCchhh
Confidence            11              0111 11222334444444467889999999754

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=98.82  E-value=1.4e-08  Score=88.25  Aligned_cols=105  Identities=12%  Similarity=0.209  Sum_probs=64.3

Q ss_pred             CCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhc-----ccceEEEEecCCcCHHHHHH
Q 035585           22 NKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKL-----FDQVVFSEVSQTPDIKKIHG   96 (183)
Q Consensus        22 ~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~   96 (183)
                      +.....++||+.++..+...+.+...+.++|+|++|+|||++++.++..+.....     ...+++++++.-..-     
T Consensus       166 ~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g-----  240 (854)
T 1qvr_A          166 EGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAG-----  240 (854)
T ss_dssp             TTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------
T ss_pred             cCCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhcc-----
Confidence            4455678999999999999998766678899999999999999999998754211     112444443221100     


Q ss_pred             HHHHHhCCCchhHHHHHHHHHHHHHHhc-CCeEEEEEeCCCCcc
Q 035585           97 EIAEKLGLEFSEEAESRRASRLYERLKK-EKMILVILDNIWKYL  139 (183)
Q Consensus        97 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~llvlD~~~~~~  139 (183)
                             ..... .....+..++..+.. .++.+|+|||++.+.
T Consensus       241 -------~~~~g-~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~  276 (854)
T 1qvr_A          241 -------AKYRG-EFEERLKAVIQEVVQSQGEVILFIDELHTVV  276 (854)
T ss_dssp             -------------CHHHHHHHHHHHHHTTCSSEEEEECCC----
T ss_pred             -------Cccch-HHHHHHHHHHHHHHhcCCCeEEEEecHHHHh
Confidence                   00000 112233444444543 468999999998763

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=98.79  E-value=4.5e-08  Score=75.96  Aligned_cols=98  Identities=16%  Similarity=0.231  Sum_probs=60.8

Q ss_pred             CCCcccccchHHHHHHHHHHhc------------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCc
Q 035585           22 NKGYEAFKSRLSTLKSIQDALT------------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTP   89 (183)
Q Consensus        22 ~~~~~~~~gR~~~l~~l~~~l~------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (183)
                      .....++.|.+...+.|.+.+.            ..+.+.++|+|++|+|||+||+.+++.....    ..+.++++.-.
T Consensus         8 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~----~~~~i~~~~l~   83 (322)
T 1xwi_A            8 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS----TFFSISSSDLV   83 (322)
T ss_dssp             CCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSC----EEEEEECCSSC
T ss_pred             CCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCC----cEEEEEhHHHH
Confidence            3445567788888777776552            1234789999999999999999999876221    23344443221


Q ss_pred             CHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585           90 DIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY  138 (183)
Q Consensus        90 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~  138 (183)
                      ..              .... .......++......++.+|+|||++.+
T Consensus        84 ~~--------------~~g~-~~~~~~~lf~~a~~~~~~vl~iDEid~l  117 (322)
T 1xwi_A           84 SK--------------WLGE-SEKLVKNLFQLARENKPSIIFIDEIDSL  117 (322)
T ss_dssp             CS--------------SCCS-CHHHHHHHHHHHHHTSSEEEEEETTTGG
T ss_pred             hh--------------hhhH-HHHHHHHHHHHHHhcCCcEEEeecHHHh
Confidence            10              0000 1122334444444567889999999866

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=98.78  E-value=1.5e-08  Score=81.95  Aligned_cols=125  Identities=13%  Similarity=0.256  Sum_probs=68.6

Q ss_pred             Cccccc-chHH--HHHHHHHHhccCC-ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHH
Q 035585           24 GYEAFK-SRLS--TLKSIQDALTDVN-VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIA   99 (183)
Q Consensus        24 ~~~~~~-gR~~--~l~~l~~~l~~~~-~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   99 (183)
                      ....|+ |...  ....+.....+.. ...++|+|++|+|||||++.+++..........++++++..      +...+.
T Consensus       103 tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~------~~~~~~  176 (440)
T 2z4s_A          103 TFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK------FLNDLV  176 (440)
T ss_dssp             SGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH------HHHHHH
T ss_pred             ChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH------HHHHHH
Confidence            344566 4332  3334444443332 67899999999999999999999886542223356655433      222333


Q ss_pred             HHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCccc----ccccCcCCCC-CCCCcEEEEEecC
Q 035585          100 EKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKYLD----LETVGIPFGD-DHRGCKLLLTARD  163 (183)
Q Consensus       100 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~----~~~l~~~~~~-~~~~~~iiitsr~  163 (183)
                      ..+....        ...+...+. .+.-+|+|||++....    .+.+...+.. ...+..+|+||+.
T Consensus       177 ~~~~~~~--------~~~~~~~~~-~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~  236 (440)
T 2z4s_A          177 DSMKEGK--------LNEFREKYR-KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR  236 (440)
T ss_dssp             HHHHTTC--------HHHHHHHHT-TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             HHHHccc--------HHHHHHHhc-CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence            3222110        112222221 2678999999986532    2222222211 2346678888875

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=98.77  E-value=5.1e-08  Score=74.46  Aligned_cols=98  Identities=11%  Similarity=0.193  Sum_probs=63.4

Q ss_pred             cCCCcccccchHHHHHHHHHHhcc------------CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC
Q 035585           21 SNKGYEAFKSRLSTLKSIQDALTD------------VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT   88 (183)
Q Consensus        21 ~~~~~~~~~gR~~~l~~l~~~l~~------------~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~   88 (183)
                      ++.....++|.+..++.+.+.+..            ...+.++|+|++|+|||++|+.++.....     ..+.++++..
T Consensus        16 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~-----~~~~i~~~~l   90 (297)
T 3b9p_A           16 AKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSA-----TFLNISAASL   90 (297)
T ss_dssp             SCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTC-----EEEEEESTTT
T ss_pred             CCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCC-----CeEEeeHHHH
Confidence            445567789999999999887631            24578999999999999999999887532     2334444322


Q ss_pred             cCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585           89 PDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY  138 (183)
Q Consensus        89 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~  138 (183)
                      ..              .... ........++......++.+|+|||++.+
T Consensus        91 ~~--------------~~~~-~~~~~~~~~~~~~~~~~~~vl~iDEid~l  125 (297)
T 3b9p_A           91 TS--------------KYVG-DGEKLVRALFAVARHMQPSIIFIDEVDSL  125 (297)
T ss_dssp             SS--------------SSCS-CHHHHHHHHHHHHHHTCSEEEEEETGGGT
T ss_pred             hh--------------cccc-hHHHHHHHHHHHHHHcCCcEEEeccHHHh
Confidence            11              0000 01222333444444467889999999865

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.77  E-value=1.1e-08  Score=84.37  Aligned_cols=71  Identities=15%  Similarity=0.140  Sum_probs=53.9

Q ss_pred             hhhhhhcCCCcccccchHHHHHHHHHHhcc-----------------CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcc
Q 035585           15 EEVWLKSNKGYEAFKSRLSTLKSIQDALTD-----------------VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLF   77 (183)
Q Consensus        15 ~~~~~~~~~~~~~~~gR~~~l~~l~~~l~~-----------------~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~   77 (183)
                      .+.....|.....++|++..++.+.+++..                 ...+.++|+|++|+|||++|+.+++.+..    
T Consensus        28 lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~----  103 (516)
T 1sxj_A           28 LWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY----  103 (516)
T ss_dssp             CHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC----
T ss_pred             CcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCC----
Confidence            345556677788899999999999998863                 13578999999999999999999987621    


Q ss_pred             cceEEEEecCCcC
Q 035585           78 DQVVFSEVSQTPD   90 (183)
Q Consensus        78 ~~~~~~~~~~~~~   90 (183)
                       .++.++++....
T Consensus       104 -~~i~in~s~~~~  115 (516)
T 1sxj_A          104 -DILEQNASDVRS  115 (516)
T ss_dssp             -EEEEECTTSCCC
T ss_pred             -CEEEEeCCCcch
Confidence             244555555443

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=98.76  E-value=3.3e-08  Score=76.87  Aligned_cols=54  Identities=19%  Similarity=0.265  Sum_probs=44.1

Q ss_pred             hhcCCCcccccchHHHHHHHHHHhc-----cCCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           19 LKSNKGYEAFKSRLSTLKSIQDALT-----DVNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        19 ~~~~~~~~~~~gR~~~l~~l~~~l~-----~~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ...|.....++|++..+..+..++.     ......++|+|++|+|||++|+.+++...
T Consensus        22 ~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~   80 (338)
T 3pfi_A           22 SLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMS   80 (338)
T ss_dssp             -CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ccCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence            3456677889999999999988876     24456799999999999999999977653

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=98.75  E-value=2.5e-08  Score=78.44  Aligned_cols=99  Identities=18%  Similarity=0.265  Sum_probs=61.7

Q ss_pred             hcCCCcccccchHHHHHHHHHHhc------------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585           20 KSNKGYEAFKSRLSTLKSIQDALT------------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ   87 (183)
Q Consensus        20 ~~~~~~~~~~gR~~~l~~l~~~l~------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~   87 (183)
                      .|+.....++|.+...+.|.+.+.            ....+.++|+|++|+|||+||+.+++.....     .+.++++ 
T Consensus        45 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~-----~~~v~~~-  118 (355)
T 2qp9_X           45 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST-----FFSVSSS-  118 (355)
T ss_dssp             --CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE-----EEEEEHH-
T ss_pred             CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC-----EEEeeHH-
Confidence            345556678899999888887762            1234569999999999999999999886432     2333332 


Q ss_pred             CcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585           88 TPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY  138 (183)
Q Consensus        88 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~  138 (183)
                           .    +...+.    . ........++.......+.+|+|||++.+
T Consensus       119 -----~----l~~~~~----g-~~~~~~~~~f~~a~~~~~~vl~iDEid~l  155 (355)
T 2qp9_X          119 -----D----LVSKWM----G-ESEKLVKQLFAMARENKPSIIFIDQVDAL  155 (355)
T ss_dssp             -----H----HHSCC--------CHHHHHHHHHHHHHTSSEEEEEECGGGG
T ss_pred             -----H----Hhhhhc----c-hHHHHHHHHHHHHHHcCCeEEEEechHhh
Confidence                 1    111110    1 01122344444444467899999999865

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=98.75  E-value=4.3e-08  Score=79.80  Aligned_cols=50  Identities=20%  Similarity=0.317  Sum_probs=44.0

Q ss_pred             CcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           24 GYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        24 ~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      ....++||+.++..+...+.+.....++|+|++|+|||++++.++..+..
T Consensus       178 ~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~  227 (468)
T 3pxg_A          178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIIN  227 (468)
T ss_dssp             CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred             CCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence            34569999999999999998766778899999999999999999998754

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=98.74  E-value=8.2e-08  Score=77.68  Aligned_cols=99  Identities=16%  Similarity=0.229  Sum_probs=60.3

Q ss_pred             cCCCcccccchHHHHHHHHHHhc------------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC
Q 035585           21 SNKGYEAFKSRLSTLKSIQDALT------------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT   88 (183)
Q Consensus        21 ~~~~~~~~~gR~~~l~~l~~~l~------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~   88 (183)
                      |+.....+.|.+...+.|.+.+.            ....+.++|+|++|+|||+||+.++......    ..+.++++..
T Consensus       129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~----~~~~v~~~~l  204 (444)
T 2zan_A          129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS----TFFSISSSDL  204 (444)
T ss_dssp             CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSS----EEEEECCC--
T ss_pred             CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCC----CEEEEeHHHH
Confidence            44555678899998888887652            2345789999999999999999999876211    1223333211


Q ss_pred             cCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585           89 PDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY  138 (183)
Q Consensus        89 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~  138 (183)
                            .....   +..      ...+..++.......+.+|+|||++.+
T Consensus       205 ------~~~~~---g~~------~~~~~~~f~~a~~~~~~vl~iDEid~l  239 (444)
T 2zan_A          205 ------VSKWL---GES------EKLVKNLFQLARENKPSIIFIDEIDSL  239 (444)
T ss_dssp             ----------------C------CCTHHHHHHHHHHSCSEEEEESCTTTT
T ss_pred             ------Hhhhc---chH------HHHHHHHHHHHHHcCCeEEEEechHhh
Confidence                  11111   100      011233444444467889999999866

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=98.74  E-value=2.7e-08  Score=76.77  Aligned_cols=52  Identities=19%  Similarity=0.283  Sum_probs=42.4

Q ss_pred             cCCCcccccchHHHHHHHHHHhc-----cCCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           21 SNKGYEAFKSRLSTLKSIQDALT-----DVNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        21 ~~~~~~~~~gR~~~l~~l~~~l~-----~~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .|.....|+|+...+..+..++.     ......++|+|++|+|||++|+.+++...
T Consensus         7 ~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~   63 (324)
T 1hqc_A            7 RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG   63 (324)
T ss_dssp             CCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHT
T ss_pred             CcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhC
Confidence            34556789999999998888775     23457899999999999999999988764

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=98.70  E-value=1.6e-07  Score=80.70  Aligned_cols=103  Identities=17%  Similarity=0.276  Sum_probs=66.3

Q ss_pred             CCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhc----ccc-eEEEEecCCcCHHHHHHH
Q 035585           23 KGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKL----FDQ-VVFSEVSQTPDIKKIHGE   97 (183)
Q Consensus        23 ~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~   97 (183)
                      .....++||+.++..+.+.+.......++|+|++|+|||++++.++..+.....    ... ++.+++.....       
T Consensus       183 ~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~-------  255 (758)
T 1r6b_X          183 GGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLA-------  255 (758)
T ss_dssp             TCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---C-------
T ss_pred             CCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhc-------
Confidence            345578999999999999998777788999999999999999999988754321    112 22222111100       


Q ss_pred             HHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585           98 IAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY  138 (183)
Q Consensus        98 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~  138 (183)
                           +..... ........++..+...++.+|+|||++.+
T Consensus       256 -----~~~~~g-~~e~~l~~~~~~~~~~~~~iL~IDEi~~l  290 (758)
T 1r6b_X          256 -----GTKYRG-DFEKRFKALLKQLEQDTNSILFIDEIHTI  290 (758)
T ss_dssp             -----CCCCSS-CHHHHHHHHHHHHSSSSCEEEEETTTTTT
T ss_pred             -----cccccc-hHHHHHHHHHHHHHhcCCeEEEEechHHH
Confidence                 000111 12223344555555456799999999866

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=98.69  E-value=1.1e-08  Score=78.59  Aligned_cols=106  Identities=15%  Similarity=0.250  Sum_probs=62.3

Q ss_pred             ccccchHHHHHHHHHHhccC---------CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHH
Q 035585           26 EAFKSRLSTLKSIQDALTDV---------NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHG   96 (183)
Q Consensus        26 ~~~~gR~~~l~~l~~~l~~~---------~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (183)
                      ..++|....++.+...+...         +...++++|++|+|||++|+.++......  ....++++++....... ..
T Consensus        17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~--~~~~~~~~~~~~~~~~~-~~   93 (311)
T 4fcw_A           17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTEYMEKHA-VS   93 (311)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC--GGGEEEEEGGGCCSTTH-HH
T ss_pred             hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC--CcceEEeeccccccccc-HH
Confidence            45789999988888877521         23579999999999999999999987543  22356666654432211 11


Q ss_pred             HHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585           97 EIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY  138 (183)
Q Consensus        97 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~  138 (183)
                      .+   ++..... ........+...+.....-+|+|||++.+
T Consensus        94 ~l---~g~~~~~-~~~~~~~~~~~~~~~~~~~vl~lDEi~~l  131 (311)
T 4fcw_A           94 RL---IGAPPGY-VGYEEGGQLTEAVRRRPYSVILFDAIEKA  131 (311)
T ss_dssp             HH---HCCCTTS-TTTTTCCHHHHHHHHCSSEEEEEETGGGS
T ss_pred             Hh---cCCCCcc-ccccccchHHHHHHhCCCeEEEEeChhhc
Confidence            22   1111000 00000012222333345579999999866

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=98.69  E-value=1.1e-07  Score=74.74  Aligned_cols=49  Identities=16%  Similarity=0.247  Sum_probs=38.4

Q ss_pred             cccccchHHHHHHHH---HHhccCC--ccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           25 YEAFKSRLSTLKSIQ---DALTDVN--VNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        25 ~~~~~gR~~~l~~l~---~~l~~~~--~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      ...|+|++.....+.   ..+....  .+.++|+|++|+|||++|+.+++.+..
T Consensus        43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~   96 (368)
T 3uk6_A           43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP   96 (368)
T ss_dssp             ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred             hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            668999999877644   4444333  358999999999999999999998764

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.69  E-value=1e-07  Score=75.76  Aligned_cols=96  Identities=18%  Similarity=0.251  Sum_probs=62.5

Q ss_pred             CCcccccchHHHHHHHHHHhc-------------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCc
Q 035585           23 KGYEAFKSRLSTLKSIQDALT-------------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTP   89 (183)
Q Consensus        23 ~~~~~~~gR~~~l~~l~~~l~-------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (183)
                      -...++-|-++..+.|.+...             -..++-++++||||+|||+||+++++.....     .+.++.+.-.
T Consensus       145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~-----f~~v~~s~l~  219 (405)
T 4b4t_J          145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK-----FIRVSGAELV  219 (405)
T ss_dssp             CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE-----EEEEEGGGGS
T ss_pred             CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC-----ceEEEhHHhh
Confidence            334555677777777766542             2345789999999999999999999986543     2333333211


Q ss_pred             CHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585           90 DIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY  138 (183)
Q Consensus        90 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~  138 (183)
                                    ....+ .....+..++...+...+.+|+|||+|..
T Consensus       220 --------------sk~vG-ese~~vr~lF~~Ar~~aP~IIFiDEiDai  253 (405)
T 4b4t_J          220 --------------QKYIG-EGSRMVRELFVMAREHAPSIIFMDEIDSI  253 (405)
T ss_dssp             --------------CSSTT-HHHHHHHHHHHHHHHTCSEEEEEESSSCC
T ss_pred             --------------ccccc-hHHHHHHHHHHHHHHhCCceEeeecchhh
Confidence                          11111 12334566666666688999999999855

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=98.67  E-value=1.2e-07  Score=73.97  Aligned_cols=118  Identities=8%  Similarity=0.041  Sum_probs=69.8

Q ss_pred             chHHHHHHHHHHhccCC-ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcc-------------------cceEEEEecCCc
Q 035585           30 SRLSTLKSIQDALTDVN-VNIVGVYGMGGIGKTTLVKEFARQASEEKLF-------------------DQVVFSEVSQTP   89 (183)
Q Consensus        30 gR~~~l~~l~~~l~~~~-~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~   89 (183)
                      -.++..+.+.+.+.+++ ++.++++|++|+|||++++.++..+......                   ..+.+++.... 
T Consensus         6 w~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-   84 (334)
T 1a5t_A            6 WLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG-   84 (334)
T ss_dssp             GGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT-
T ss_pred             chHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc-
Confidence            34566777887776554 4679999999999999999999887543110                   01122221100 


Q ss_pred             CHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecC
Q 035585           90 DIKKIHGEIAEKLGLEFSEEAESRRASRLYERLK----KEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARD  163 (183)
Q Consensus        90 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~  163 (183)
                                       ......+.++.+.+.+.    .+++.++||||+|.+.  ..+.++..+.....++.+|++|.+
T Consensus        85 -----------------~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~  147 (334)
T 1a5t_A           85 -----------------KNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATRE  147 (334)
T ss_dssp             -----------------CSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESC
T ss_pred             -----------------CCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCC
Confidence                             00001111223333332    2567899999999774  344555555555567788888776


Q ss_pred             hH
Q 035585          164 CN  165 (183)
Q Consensus       164 ~~  165 (183)
                      .+
T Consensus       148 ~~  149 (334)
T 1a5t_A          148 PE  149 (334)
T ss_dssp             GG
T ss_pred             hH
Confidence            53

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=98.66  E-value=1.4e-09  Score=74.69  Aligned_cols=47  Identities=11%  Similarity=0.111  Sum_probs=34.3

Q ss_pred             ccccchHHHHHHHHHHhc--cCCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           26 EAFKSRLSTLKSIQDALT--DVNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        26 ~~~~gR~~~l~~l~~~l~--~~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ..++|+...+..+.+.+.  ......+.|+|++|+|||++|+.++....
T Consensus         4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~   52 (143)
T 3co5_A            4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT   52 (143)
T ss_dssp             ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred             cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence            357788888888887765  23445689999999999999999887643

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=98.66  E-value=9.3e-08  Score=73.68  Aligned_cols=117  Identities=9%  Similarity=0.012  Sum_probs=70.4

Q ss_pred             hHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhh-hcccceEEEEecC-CcCHHHHHHHHHHHhCCCchh
Q 035585           31 RLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEE-KLFDQVVFSEVSQ-TPDIKKIHGEIAEKLGLEFSE  108 (183)
Q Consensus        31 R~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~i~~~l~~~~~~  108 (183)
                      -+..++.|.+.+.+.+.+.++++||+|+|||++++.+++..... .....+.+++.+. ...... .+.+.+.+...   
T Consensus         2 ~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~~~~~~---   77 (305)
T 2gno_A            2 AKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDFLNYS---   77 (305)
T ss_dssp             --CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHHHTSC---
T ss_pred             hHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHHHHhhc---
Confidence            34566777887776667899999999999999999998753211 0012344444432 222221 12222222110   


Q ss_pred             HHHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecCh
Q 035585          109 EAESRRASRLYERLKKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDC  164 (183)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~  164 (183)
                                   -...++.++||||++.+.  ..+.++..+....+.+.+|++|.+.
T Consensus        78 -------------p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~  122 (305)
T 2gno_A           78 -------------PELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRW  122 (305)
T ss_dssp             -------------CSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCG
T ss_pred             -------------cccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECCh
Confidence                         012467899999999774  4555666665666678888887654

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.65  E-value=1.8e-07  Score=75.26  Aligned_cols=95  Identities=18%  Similarity=0.308  Sum_probs=61.1

Q ss_pred             CcccccchHHHHHHHHHHhc-------------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcC
Q 035585           24 GYEAFKSRLSTLKSIQDALT-------------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPD   90 (183)
Q Consensus        24 ~~~~~~gR~~~l~~l~~~l~-------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (183)
                      ...++.|-++..+.|.+.+.             -..++-++++||||+|||+||+++++.....     .+.++.+.-.+
T Consensus       179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~-----~~~v~~s~l~s  253 (437)
T 4b4t_L          179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN-----FIFSPASGIVD  253 (437)
T ss_dssp             CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGTCC
T ss_pred             ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehhhhcc
Confidence            34455666666666665432             2356789999999999999999999986543     23334332211


Q ss_pred             HHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585           91 IKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY  138 (183)
Q Consensus        91 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~  138 (183)
                                    ...+ .....+..++.......+.+|+|||+|..
T Consensus       254 --------------k~~G-ese~~ir~~F~~A~~~~P~IifiDEiDai  286 (437)
T 4b4t_L          254 --------------KYIG-ESARIIREMFAYAKEHEPCIIFMDEVDAI  286 (437)
T ss_dssp             --------------SSSS-HHHHHHHHHHHHHHHSCSEEEEEECCCSS
T ss_pred             --------------ccch-HHHHHHHHHHHHHHhcCCceeeeeccccc
Confidence                          1111 12234455666666688999999999854

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=98.65  E-value=2.6e-07  Score=70.94  Aligned_cols=98  Identities=14%  Similarity=0.205  Sum_probs=60.4

Q ss_pred             cCCCcccccchHHHHHHHHHHhcc-------------CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585           21 SNKGYEAFKSRLSTLKSIQDALTD-------------VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ   87 (183)
Q Consensus        21 ~~~~~~~~~gR~~~l~~l~~~l~~-------------~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~   87 (183)
                      |.....++.|.+...+.|.+++..             .....++|+|++|+|||+||+.++......     .+.+++  
T Consensus        10 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~-----~i~v~~--   82 (301)
T 3cf0_A           10 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-----FISIKG--   82 (301)
T ss_dssp             CCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCE-----EEEECH--
T ss_pred             CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCC-----EEEEEh--
Confidence            334445678888888777776531             345689999999999999999999876421     222222  


Q ss_pred             CcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585           88 TPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY  138 (183)
Q Consensus        88 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~  138 (183)
                          ..+.....   +..      ......++.......+.+|+|||++.+
T Consensus        83 ----~~l~~~~~---g~~------~~~~~~~f~~a~~~~p~il~iDEid~l  120 (301)
T 3cf0_A           83 ----PELLTMWF---GES------EANVREIFDKARQAAPCVLFFDELDSI  120 (301)
T ss_dssp             ----HHHHHHHH---TTC------TTHHHHHHHHHHHTCSEEEEECSTTHH
T ss_pred             ----HHHHhhhc---Cch------HHHHHHHHHHHHhcCCeEEEEEChHHH
Confidence                12222221   111      112234444444467899999999854

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=98.64  E-value=1.7e-07  Score=67.58  Aligned_cols=53  Identities=15%  Similarity=0.210  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHhccC----CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEec
Q 035585           32 LSTLKSIQDALTDV----NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVS   86 (183)
Q Consensus        32 ~~~l~~l~~~l~~~----~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~   86 (183)
                      ...++.+..++.+.    ....+.|+|++|+|||+|++.+++.....  ...++|++++
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~--~~~~~~~~~~   91 (202)
T 2w58_A           35 IKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR--NVSSLIVYVP   91 (202)
T ss_dssp             HHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEEHH
T ss_pred             HHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEhH
Confidence            34555555655432    22789999999999999999999888654  3345665543

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=98.62  E-value=1.7e-07  Score=80.52  Aligned_cols=51  Identities=20%  Similarity=0.314  Sum_probs=44.5

Q ss_pred             CCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           23 KGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        23 ~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      .....++||+.++..+...+.......++|+|++|+|||++|+.++..+..
T Consensus       177 ~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~  227 (758)
T 3pxi_A          177 DSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIIN  227 (758)
T ss_dssp             SCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred             CCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhc
Confidence            344579999999999999998766778999999999999999999998743

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.61  E-value=1.3e-07  Score=75.98  Aligned_cols=98  Identities=15%  Similarity=0.182  Sum_probs=63.2

Q ss_pred             cCCCcccccchHHHHHHHHHHhc-------------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585           21 SNKGYEAFKSRLSTLKSIQDALT-------------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ   87 (183)
Q Consensus        21 ~~~~~~~~~gR~~~l~~l~~~l~-------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~   87 (183)
                      |.....++.|-++..+.|.+.+.             -..++-++++||||+|||+||++++......     .+.++.+.
T Consensus       176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~-----f~~v~~s~  250 (434)
T 4b4t_M          176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT-----FLKLAAPQ  250 (434)
T ss_dssp             CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGG
T ss_pred             CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC-----EEEEehhh
Confidence            44455667788887777776532             2356789999999999999999999986543     22333322


Q ss_pred             CcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585           88 TPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY  138 (183)
Q Consensus        88 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~  138 (183)
                      -              .....+. ....+..++...+...+.+|+|||+|..
T Consensus       251 l--------------~~~~vGe-se~~ir~lF~~A~~~aP~IifiDEiDal  286 (434)
T 4b4t_M          251 L--------------VQMYIGE-GAKLVRDAFALAKEKAPTIIFIDELDAI  286 (434)
T ss_dssp             G--------------CSSCSSH-HHHHHHHHHHHHHHHCSEEEEEECTHHH
T ss_pred             h--------------hhcccch-HHHHHHHHHHHHHhcCCeEEeecchhhh
Confidence            1              1111111 2234455555555578999999999743

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=98.59  E-value=1.7e-08  Score=75.99  Aligned_cols=61  Identities=10%  Similarity=0.101  Sum_probs=41.5

Q ss_pred             ccccchHHHHHHHHHHhc--cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC
Q 035585           26 EAFKSRLSTLKSIQDALT--DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT   88 (183)
Q Consensus        26 ~~~~gR~~~l~~l~~~l~--~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~   88 (183)
                      ..++|+...+..+.+.+.  ......++|+|++|+|||++|+.+++.....  ....++++++..
T Consensus         6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~--~~~~~~v~~~~~   68 (265)
T 2bjv_A            6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRW--QGPFISLNCAAL   68 (265)
T ss_dssp             ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT--TSCEEEEEGGGS
T ss_pred             ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc--CCCeEEEecCCC
Confidence            457788888887776554  2334678999999999999999999876532  223556666654

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.57  E-value=2.8e-07  Score=73.98  Aligned_cols=94  Identities=18%  Similarity=0.213  Sum_probs=60.9

Q ss_pred             CcccccchHHHHHHHHHHhc-------------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcC
Q 035585           24 GYEAFKSRLSTLKSIQDALT-------------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPD   90 (183)
Q Consensus        24 ~~~~~~gR~~~l~~l~~~l~-------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (183)
                      ...++.|-+...+.|.+.+.             -..++-++++||+|+|||+||+++++.....     .+.++.+.-.+
T Consensus       170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~-----~~~v~~~~l~~  244 (428)
T 4b4t_K          170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA-----FIRVNGSEFVH  244 (428)
T ss_dssp             CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE-----EEEEEGGGTCC
T ss_pred             CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eEEEecchhhc
Confidence            34456677777777766442             2356779999999999999999999986543     23333332111


Q ss_pred             HHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 035585           91 IKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWK  137 (183)
Q Consensus        91 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~  137 (183)
                                    ...+ .....+..++...+...+.+|+|||+|.
T Consensus       245 --------------~~~G-e~e~~ir~lF~~A~~~aP~IifiDEiD~  276 (428)
T 4b4t_K          245 --------------KYLG-EGPRMVRDVFRLARENAPSIIFIDEVDS  276 (428)
T ss_dssp             --------------SSCS-HHHHHHHHHHHHHHHTCSEEEEEECTHH
T ss_pred             --------------cccc-hhHHHHHHHHHHHHHcCCCeeechhhhh
Confidence                          1111 1223445666666668899999999973

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=98.56  E-value=2e-07  Score=68.23  Aligned_cols=40  Identities=18%  Similarity=0.299  Sum_probs=30.6

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ   87 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~   87 (183)
                      +..+++|+|++|+|||||++.++......  -..++|+....
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~~~~   61 (235)
T 2w0m_A           22 QGFFIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVTTEE   61 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEESSS
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEEccc
Confidence            34689999999999999999999776543  33566766544

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=98.56  E-value=2.3e-07  Score=75.54  Aligned_cols=95  Identities=18%  Similarity=0.242  Sum_probs=58.0

Q ss_pred             CcccccchHHHHHHHHHHhc---c---------CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCH
Q 035585           24 GYEAFKSRLSTLKSIQDALT---D---------VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDI   91 (183)
Q Consensus        24 ~~~~~~gR~~~l~~l~~~l~---~---------~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (183)
                      ...++.|.++.++.+.+...   +         ..++-++|+|++|+|||+|++.++.....     ..++++++.....
T Consensus        14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~-----~f~~is~~~~~~~   88 (476)
T 2ce7_A           14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANV-----PFFHISGSDFVEL   88 (476)
T ss_dssp             CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTC-----CEEEEEGGGTTTC
T ss_pred             CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCC-----CeeeCCHHHHHHH
Confidence            34567787777666665432   1         12356899999999999999999986542     2334444332111


Q ss_pred             HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585           92 KKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY  138 (183)
Q Consensus        92 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~  138 (183)
                                    .... .......++.......+.+|+|||++.+
T Consensus        89 --------------~~g~-~~~~~r~lf~~A~~~~p~ILfIDEid~l  120 (476)
T 2ce7_A           89 --------------FVGV-GAARVRDLFAQAKAHAPCIVFIDEIDAV  120 (476)
T ss_dssp             --------------CTTH-HHHHHHHHHHHHHHTCSEEEEEETGGGT
T ss_pred             --------------Hhcc-cHHHHHHHHHHHHhcCCCEEEEechhhh
Confidence                          0011 1122344555555577899999999764

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.56  E-value=3e-07  Score=73.51  Aligned_cols=98  Identities=20%  Similarity=0.231  Sum_probs=62.2

Q ss_pred             cCCCcccccchHHHHHHHHHHhc-------------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585           21 SNKGYEAFKSRLSTLKSIQDALT-------------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ   87 (183)
Q Consensus        21 ~~~~~~~~~gR~~~l~~l~~~l~-------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~   87 (183)
                      |.-...++-|-++..+.|.+.+.             -..++-++++||+|+|||+||++++......     .+.++.+.
T Consensus       177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~-----fi~v~~s~  251 (437)
T 4b4t_I          177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT-----FLRIVGSE  251 (437)
T ss_dssp             CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE-----EEEEESGG
T ss_pred             CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC-----EEEEEHHH
Confidence            33444455667777766665432             2356789999999999999999999986643     22333222


Q ss_pred             CcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585           88 TPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY  138 (183)
Q Consensus        88 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~  138 (183)
                      -              .....+ .....+..++...+...+.+|+|||+|..
T Consensus       252 l--------------~sk~vG-esek~ir~lF~~Ar~~aP~IIfiDEiDai  287 (437)
T 4b4t_I          252 L--------------IQKYLG-DGPRLCRQIFKVAGENAPSIVFIDEIDAI  287 (437)
T ss_dssp             G--------------CCSSSS-HHHHHHHHHHHHHHHTCSEEEEEEEESSS
T ss_pred             h--------------hhccCc-hHHHHHHHHHHHHHhcCCcEEEEehhhhh
Confidence            1              111111 12334556666666688999999999854

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.54  E-value=4.2e-07  Score=73.35  Aligned_cols=95  Identities=16%  Similarity=0.220  Sum_probs=61.8

Q ss_pred             CcccccchHHHHHHHHHHhc-------------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcC
Q 035585           24 GYEAFKSRLSTLKSIQDALT-------------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPD   90 (183)
Q Consensus        24 ~~~~~~gR~~~l~~l~~~l~-------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (183)
                      ...++.|-++..+.|.+.+.             -..++-++++||+|+|||+||++++++....     .+.++.+.-  
T Consensus       207 t~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~-----fi~vs~s~L--  279 (467)
T 4b4t_H          207 TYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT-----FIRVIGSEL--  279 (467)
T ss_dssp             CCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGG--
T ss_pred             CHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC-----eEEEEhHHh--
Confidence            33456677777777766432             2467889999999999999999999986543     223333221  


Q ss_pred             HHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585           91 IKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY  138 (183)
Q Consensus        91 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~  138 (183)
                                  .....+ .....+..++...+...+.+|+|||++..
T Consensus       280 ------------~sk~vG-esek~ir~lF~~Ar~~aP~IIfiDEiDai  314 (467)
T 4b4t_H          280 ------------VQKYVG-EGARMVRELFEMARTKKACIIFFDEIDAV  314 (467)
T ss_dssp             ------------CCCSSS-HHHHHHHHHHHHHHHTCSEEEEEECCTTT
T ss_pred             ------------hcccCC-HHHHHHHHHHHHHHhcCCceEeecccccc
Confidence                        111111 12234456666666688999999999855

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=98.53  E-value=4.1e-07  Score=70.32  Aligned_cols=121  Identities=18%  Similarity=0.230  Sum_probs=64.6

Q ss_pred             Cccccc-c--hHHHHHHHHHHhccC--CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHH
Q 035585           24 GYEAFK-S--RLSTLKSIQDALTDV--NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEI   98 (183)
Q Consensus        24 ~~~~~~-g--R~~~l~~l~~~l~~~--~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   98 (183)
                      ....|+ |  .......+..+....  ....++|+|++|+|||+|++.+++.....  ...++++++..      +...+
T Consensus         9 ~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~~~~------~~~~~   80 (324)
T 1l8q_A            9 TLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSADD------FAQAM   80 (324)
T ss_dssp             CSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEEHHH------HHHHH
T ss_pred             CcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEHHH------HHHHH
Confidence            344554 3  233344455554433  35689999999999999999999987654  22355655432      22222


Q ss_pred             HHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCccc----ccccCcCCCC-CCCCcEEEEEec
Q 035585           99 AEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKYLD----LETVGIPFGD-DHRGCKLLLTAR  162 (183)
Q Consensus        99 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~----~~~l~~~~~~-~~~~~~iiitsr  162 (183)
                      ...+...        ....+....  .+..+|+|||++....    ...+...+.. ...+..+|+++.
T Consensus        81 ~~~~~~~--------~~~~~~~~~--~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~  139 (324)
T 1l8q_A           81 VEHLKKG--------TINEFRNMY--KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASD  139 (324)
T ss_dssp             HHHHHHT--------CHHHHHHHH--HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred             HHHHHcC--------cHHHHHHHh--cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            2221110        011222223  2367999999986532    1222222211 123456777775

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=98.50  E-value=3.3e-08  Score=76.11  Aligned_cols=60  Identities=10%  Similarity=0.135  Sum_probs=43.9

Q ss_pred             cccchHHHHHHHHHHhc--cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC
Q 035585           27 AFKSRLSTLKSIQDALT--DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT   88 (183)
Q Consensus        27 ~~~gR~~~l~~l~~~l~--~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~   88 (183)
                      .++|+...+..+.+.+.  ......++|+|++|+|||++|+.+++.....  ....+.+++...
T Consensus         3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~--~~~~v~v~~~~~   64 (304)
T 1ojl_A            3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARS--DRPLVTLNCAAL   64 (304)
T ss_dssp             CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCS--SSCCCEEECSSC
T ss_pred             CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCccc--CCCeEEEeCCCC
Confidence            47888888888887765  2445678999999999999999998865432  223456666654

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=98.50  E-value=1.8e-08  Score=75.92  Aligned_cols=51  Identities=20%  Similarity=0.182  Sum_probs=36.9

Q ss_pred             CCcccccchHHHHHHHHHHhc------------cCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           23 KGYEAFKSRLSTLKSIQDALT------------DVNVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        23 ~~~~~~~gR~~~l~~l~~~l~------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      .....++|.+...+.+.+.+.            ......++|+|++|+|||+||+.++.....
T Consensus         8 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~   70 (268)
T 2r62_A            8 VRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHV   70 (268)
T ss_dssp             CCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTC
T ss_pred             CCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence            344567787777777666543            122345889999999999999999987643

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=98.48  E-value=2.1e-07  Score=71.15  Aligned_cols=46  Identities=22%  Similarity=0.353  Sum_probs=37.9

Q ss_pred             cccchHHHHHHHHHHhcc--------------CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           27 AFKSRLSTLKSIQDALTD--------------VNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        27 ~~~gR~~~l~~l~~~l~~--------------~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .++|++.....+...+..              .....++++|++|+|||++|+.+++.+.
T Consensus        16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~   75 (310)
T 1ofh_A           16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN   75 (310)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            578999998888876643              2456799999999999999999998763

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=98.47  E-value=2.4e-07  Score=70.91  Aligned_cols=28  Identities=25%  Similarity=0.325  Sum_probs=24.4

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ..+..++|+||+|+|||+||+.+++.+.
T Consensus        34 ~~p~~lLl~GppGtGKT~la~aiA~~l~   61 (293)
T 3t15_A           34 KVPLILGIWGGKGQGKSFQCELVFRKMG   61 (293)
T ss_dssp             CCCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3456899999999999999999999874

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=98.44  E-value=7.3e-07  Score=65.42  Aligned_cols=63  Identities=13%  Similarity=0.213  Sum_probs=45.8

Q ss_pred             CCcccccch---HHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585           23 KGYEAFKSR---LSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ   87 (183)
Q Consensus        23 ~~~~~~~gR---~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~   87 (183)
                      .....|+++   +..+..+..+......+.++|+|++|+|||++++.++......  ...+.|+++..
T Consensus        25 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~   90 (242)
T 3bos_A           25 ETFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGI   90 (242)
T ss_dssp             CSTTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGG
T ss_pred             CChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHH
Confidence            445567763   3666777776665567899999999999999999999988764  33466666643

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=98.43  E-value=4.1e-07  Score=68.04  Aligned_cols=51  Identities=20%  Similarity=0.201  Sum_probs=37.1

Q ss_pred             CCCcccccchHHHHHHHHHHhc---c---------CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           22 NKGYEAFKSRLSTLKSIQDALT---D---------VNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        22 ~~~~~~~~gR~~~l~~l~~~l~---~---------~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +.....++|.+...+.+.+...   .         ..+..++|+|++|+|||++++.++....
T Consensus         8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~   70 (257)
T 1lv7_A            8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK   70 (257)
T ss_dssp             CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence            4445667888777776665432   1         1245689999999999999999998754

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=98.42  E-value=1.3e-06  Score=72.37  Aligned_cols=46  Identities=24%  Similarity=0.322  Sum_probs=32.8

Q ss_pred             ccchHHHHHHHHHHhc------cCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           28 FKSRLSTLKSIQDALT------DVNVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        28 ~~gR~~~l~~l~~~l~------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      ++|-+.....+.+.+.      ..+...++|+||+|+|||||++.++..+..
T Consensus        83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~  134 (543)
T 3m6a_A           83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGR  134 (543)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred             hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            4555555555544322      335678999999999999999999988743

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=98.42  E-value=4.7e-07  Score=73.43  Aligned_cols=96  Identities=11%  Similarity=0.036  Sum_probs=59.5

Q ss_pred             CcccccchHHHHHHHHHHhc---c--CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHH
Q 035585           24 GYEAFKSRLSTLKSIQDALT---D--VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEI   98 (183)
Q Consensus        24 ~~~~~~gR~~~l~~l~~~l~---~--~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   98 (183)
                      ....++|.+...+.+..++.   .  .+++.++++||+|+|||++|+.++..+...   ...+.++++....        
T Consensus        35 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~---~~~~~~~~~~~~~--------  103 (456)
T 2c9o_A           35 AASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSK---VPFCPMVGSEVYS--------  103 (456)
T ss_dssp             EETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTT---SCEEEEEGGGGCC--------
T ss_pred             chhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCC---ceEEEEeHHHHHH--------
Confidence            34678999988776655443   2  234689999999999999999999987542   1223334332211        


Q ss_pred             HHHhCCCchhHHHHHHHHHHHHHH---hcCCeEEEEEeCCCCc
Q 035585           99 AEKLGLEFSEEAESRRASRLYERL---KKEKMILVILDNIWKY  138 (183)
Q Consensus        99 ~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~llvlD~~~~~  138 (183)
                            ......  +.+...+...   ....+.+|+|||++..
T Consensus       104 ------~~~~~~--~~~~~~f~~a~~~~~~~~~il~iDEid~l  138 (456)
T 2c9o_A          104 ------TEIKKT--EVLMENFRRAIGLRIKETKEVYEGEVTEL  138 (456)
T ss_dssp             ------SSSCHH--HHHHHHHHHTEEEEEEEEEEEEEEEEEEE
T ss_pred             ------Hhhhhh--HHHHHHHHHHHhhhhcCCcEEEEechhhc
Confidence                  111111  1133444443   3467889999999755

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=98.40  E-value=2.4e-06  Score=69.84  Aligned_cols=96  Identities=18%  Similarity=0.285  Sum_probs=61.5

Q ss_pred             CCcccccchHHHHHHHHHHhc-------------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCc
Q 035585           23 KGYEAFKSRLSTLKSIQDALT-------------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTP   89 (183)
Q Consensus        23 ~~~~~~~gR~~~l~~l~~~l~-------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (183)
                      .....+.|....++.|.+++.             ......++|+|++|+|||++|+.+++....     ..++++++.  
T Consensus       201 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~-----~fv~vn~~~--  273 (489)
T 3hu3_A          201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-----FFFLINGPE--  273 (489)
T ss_dssp             CCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS-----EEEEEEHHH--
T ss_pred             CCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC-----CEEEEEchH--
Confidence            345568999999999988764             244567999999999999999999876522     234444321  


Q ss_pred             CHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585           90 DIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY  138 (183)
Q Consensus        90 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~  138 (183)
                              +...+.    . ........++.......+.+|+|||++.+
T Consensus       274 --------l~~~~~----g-~~~~~~~~~f~~A~~~~p~iLfLDEId~l  309 (489)
T 3hu3_A          274 --------IMSKLA----G-ESESNLRKAFEEAEKNAPAIIFIDELDAI  309 (489)
T ss_dssp             --------HHTSCT----T-HHHHHHHHHHHHHHHTCSEEEEEESHHHH
T ss_pred             --------hhhhhc----c-hhHHHHHHHHHHHHhcCCcEEEecchhhh
Confidence                    111111    1 11122334444444477889999999633

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=98.38  E-value=2.3e-07  Score=80.69  Aligned_cols=61  Identities=16%  Similarity=0.285  Sum_probs=43.8

Q ss_pred             ccccchHHHHHHHHHHhccC---------CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC
Q 035585           26 EAFKSRLSTLKSIQDALTDV---------NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT   88 (183)
Q Consensus        26 ~~~~gR~~~l~~l~~~l~~~---------~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~   88 (183)
                      ..++|....+..+...+...         +...++++|++|+|||++|+.++......  ....+.++++.-
T Consensus       558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~--~~~~i~i~~~~~  627 (854)
T 1qvr_A          558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTEY  627 (854)
T ss_dssp             HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSS--GGGEEEECTTTC
T ss_pred             cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--CCcEEEEechhc
Confidence            35789998888887776521         12479999999999999999999987543  123455665543

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=98.36  E-value=3e-06  Score=62.56  Aligned_cols=28  Identities=25%  Similarity=0.354  Sum_probs=24.0

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      +..+++|+|++|+|||||++.+...+..
T Consensus        33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p   60 (229)
T 2pze_A           33 RGQLLAVAGSTGAGKTSLLMMIMGELEP   60 (229)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence            4468999999999999999999877653

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.35  E-value=1e-06  Score=62.06  Aligned_cols=22  Identities=32%  Similarity=0.579  Sum_probs=19.4

Q ss_pred             CccEEEEEeCCCCcHHHHHHHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEF   67 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~   67 (183)
                      +..+++|+|++|+|||||++.+
T Consensus         8 ~gei~~l~G~nGsGKSTl~~~~   29 (171)
T 4gp7_A            8 ELSLVVLIGSSGSGKSTFAKKH   29 (171)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHH
Confidence            4578999999999999999964

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.34  E-value=9.9e-07  Score=60.82  Aligned_cols=40  Identities=23%  Similarity=0.396  Sum_probs=30.7

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ   87 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~   87 (183)
                      +...++|+|++|+|||||++.++......  -..++|++...
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~--g~~~~~~~~~~   74 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA--GKNAAYIDAAS   74 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHHTT--TCCEEEEETTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEcHHH
Confidence            56789999999999999999999987653  12256665543

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=98.33  E-value=2.7e-07  Score=79.26  Aligned_cols=60  Identities=15%  Similarity=0.230  Sum_probs=43.5

Q ss_pred             ccccchHHHHHHHHHHhcc---------CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585           26 EAFKSRLSTLKSIQDALTD---------VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ   87 (183)
Q Consensus        26 ~~~~gR~~~l~~l~~~l~~---------~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~   87 (183)
                      ..++|....+..+...+..         .+...++++|++|+|||++|+.+++.+...  ....+.++++.
T Consensus       491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~--~~~~i~i~~s~  559 (758)
T 3pxi_A          491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD--EESMIRIDMSE  559 (758)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC--TTCEEEEEGGG
T ss_pred             CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--CcceEEEechh
Confidence            3578888888888777651         111269999999999999999999987432  23456667654

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=98.33  E-value=9.6e-06  Score=59.67  Aligned_cols=92  Identities=16%  Similarity=0.189  Sum_probs=53.9

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhh----cccceEEEEecCCcCHHHHHHHHHHHhCCCch-------------h
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEK----LFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFS-------------E  108 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~-------------~  108 (183)
                      +..++.|+|++|+|||||++.++.......    ....++|++.........+ ..++..++....             .
T Consensus        23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~  101 (243)
T 1n0w_A           23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFNT  101 (243)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCCH
Confidence            447899999999999999999988532211    1245788777664333222 233333432210             1


Q ss_pred             HHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585          109 EAESRRASRLYERLKKEKMILVILDNIWKY  138 (183)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~llvlD~~~~~  138 (183)
                      .........+...+...+.-+||||++...
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~~~  131 (243)
T 1n0w_A          102 DHQTQLLYQASAMMVESRYALLIVDSATAL  131 (243)
T ss_dssp             HHHHHHHHHHHHHHHHSCEEEEEEETSSGG
T ss_pred             HHHHHHHHHHHHHHhcCCceEEEEeCchHH
Confidence            111112233444444468899999998755

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=98.31  E-value=8e-07  Score=76.44  Aligned_cols=74  Identities=15%  Similarity=0.252  Sum_probs=49.0

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhc
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKK  124 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~  124 (183)
                      ..++-++++||+|+|||+||+.+++.....     .++++++.          +..    .... .....+..++.....
T Consensus       236 ~~p~GILL~GPPGTGKT~LAraiA~elg~~-----~~~v~~~~----------l~s----k~~g-ese~~lr~lF~~A~~  295 (806)
T 3cf2_A          236 KPPRGILLYGPPGTGKTLIARAVANETGAF-----FFLINGPE----------IMS----KLAG-ESESNLRKAFEEAEK  295 (806)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHTTTTCE-----EEEEEHHH----------HHS----SCTT-HHHHHHHHHHHHHTT
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHhCCe-----EEEEEhHH----------hhc----ccch-HHHHHHHHHHHHHHH
Confidence            356789999999999999999999876432     33433321          111    1111 223345566666666


Q ss_pred             CCeEEEEEeCCCCc
Q 035585          125 EKMILVILDNIWKY  138 (183)
Q Consensus       125 ~~~~llvlD~~~~~  138 (183)
                      ..+.+|+|||+|..
T Consensus       296 ~~PsIIfIDEiDal  309 (806)
T 3cf2_A          296 NAPAIIFIDELDAI  309 (806)
T ss_dssp             SCSEEEEEESGGGT
T ss_pred             cCCeEEEEehhccc
Confidence            88999999999855

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=98.31  E-value=1e-05  Score=58.57  Aligned_cols=41  Identities=22%  Similarity=0.120  Sum_probs=31.2

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDI   91 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (183)
                      +..+++|+|++|+|||||+..++.   .  ....++|+........
T Consensus        19 ~G~~~~i~G~~GsGKTtl~~~l~~---~--~~~~v~~i~~~~~~~~   59 (220)
T 2cvh_A           19 PGVLTQVYGPYASGKTTLALQTGL---L--SGKKVAYVDTEGGFSP   59 (220)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHH---H--HCSEEEEEESSCCCCH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH---H--cCCcEEEEECCCCCCH
Confidence            446899999999999999999988   2  1346788777653343

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=98.30  E-value=1.4e-06  Score=64.74  Aligned_cols=28  Identities=25%  Similarity=0.426  Sum_probs=24.0

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      +..+++|+|++|+|||||++.+...+..
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p   57 (237)
T 2cbz_A           30 EGALVAVVGQVGCGKSSLLSALLAEMDK   57 (237)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTCSEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            4468999999999999999999876643

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=98.28  E-value=2.5e-06  Score=64.29  Aligned_cols=25  Identities=32%  Similarity=0.381  Sum_probs=22.5

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      ...++|.|++|+|||||++.++...
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCC
Confidence            5689999999999999999998765

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.28  E-value=6.3e-06  Score=62.42  Aligned_cols=71  Identities=18%  Similarity=0.270  Sum_probs=42.2

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCe
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKM  127 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  127 (183)
                      +-++|+|++|+|||||++.++.....     ..++++...-...              ... .....+..+.+......+
T Consensus        45 ~GvlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~--------------~~~-~~~~~i~~vf~~a~~~~p  104 (274)
T 2x8a_A           45 AGVLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNM--------------YVG-ESERAVRQVFQRAKNSAP  104 (274)
T ss_dssp             SEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSS--------------TTH-HHHHHHHHHHHHHHHTCS
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhh--------------hhh-HHHHHHHHHHHHHHhcCC
Confidence            34999999999999999999886543     2334433221110              000 111223334444333567


Q ss_pred             EEEEEeCCCCc
Q 035585          128 ILVILDNIWKY  138 (183)
Q Consensus       128 ~llvlD~~~~~  138 (183)
                      .++++||++..
T Consensus       105 ~i~~~Deid~~  115 (274)
T 2x8a_A          105 CVIFFDEVDAL  115 (274)
T ss_dssp             EEEEEETCTTT
T ss_pred             CeEeeehhhhh
Confidence            89999999754

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=98.28  E-value=8.8e-06  Score=63.85  Aligned_cols=86  Identities=20%  Similarity=0.277  Sum_probs=53.7

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchh------HHHHHHHHHHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSE------EAESRRASRLY  119 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~~~  119 (183)
                      +..++.|+|++|+|||||+.+++......  -..++|++........     .+++++.....      .........+.
T Consensus        60 ~G~i~~I~GppGsGKSTLal~la~~~~~~--gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~  132 (356)
T 3hr8_A           60 RGRIVEIFGQESSGKTTLALHAIAEAQKM--GGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD  132 (356)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence            44789999999999999999999887653  3457888776554432     34444433211      11222223333


Q ss_pred             HHHhcCCeEEEEEeCCCCc
Q 035585          120 ERLKKEKMILVILDNIWKY  138 (183)
Q Consensus       120 ~~~~~~~~~llvlD~~~~~  138 (183)
                      ..+.....-++|+|.+...
T Consensus       133 ~l~~~~~~dlvVIDSi~~l  151 (356)
T 3hr8_A          133 ELVRSGVVDLIVVDSVAAL  151 (356)
T ss_dssp             HHHHTSCCSEEEEECTTTC
T ss_pred             HHhhhcCCCeEEehHhhhh
Confidence            3333456779999997654

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=98.27  E-value=2e-06  Score=66.22  Aligned_cols=54  Identities=22%  Similarity=0.304  Sum_probs=37.5

Q ss_pred             hHHHHHHHHHHhccC---CccEEEEEeCCCCcHHHHHHHHHhHHh-hhhcccceEEEEec
Q 035585           31 RLSTLKSIQDALTDV---NVNIVGVYGMGGIGKTTLVKEFARQAS-EEKLFDQVVFSEVS   86 (183)
Q Consensus        31 R~~~l~~l~~~l~~~---~~~~v~i~G~~G~GKTtL~~~~~~~~~-~~~~~~~~~~~~~~   86 (183)
                      +...+..+.+++.+.   ....+.|+|++|+|||+|+..+++... ..  ...+.+++++
T Consensus       133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~--g~~v~~~~~~  190 (308)
T 2qgz_A          133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKK--GVSTTLLHFP  190 (308)
T ss_dssp             HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHS--CCCEEEEEHH
T ss_pred             HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEHH
Confidence            444555555555531   257899999999999999999999887 54  2345565543

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=98.26  E-value=6.6e-07  Score=67.09  Aligned_cols=27  Identities=30%  Similarity=0.434  Sum_probs=23.4

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +..+++|.|++|+|||||++.+...+.
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   56 (253)
T 2nq2_C           30 KGDILAVLGQNGCGKSTLLDLLLGIHR   56 (253)
T ss_dssp             TTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            446899999999999999999987654

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.25  E-value=3.5e-06  Score=63.24  Aligned_cols=26  Identities=31%  Similarity=0.456  Sum_probs=22.7

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +..+++|.|++|+|||||++.+....
T Consensus        40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           40 EGEIFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            45689999999999999999997654

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=98.24  E-value=1.4e-06  Score=65.71  Aligned_cols=26  Identities=27%  Similarity=0.461  Sum_probs=22.5

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +..+++|+|++|+|||||++.+...+
T Consensus        36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           36 SGEMVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            45789999999999999999997544

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=98.24  E-value=2.7e-06  Score=64.18  Aligned_cols=26  Identities=31%  Similarity=0.279  Sum_probs=22.5

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +..+++|+|++|+|||||++.+....
T Consensus        32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           32 EGECLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            44689999999999999999997654

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=98.23  E-value=6.7e-07  Score=67.87  Aligned_cols=26  Identities=27%  Similarity=0.523  Sum_probs=22.4

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +..+++|+|++|+|||||++.+...+
T Consensus        33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           33 RGEVTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            44789999999999999999997544

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=98.22  E-value=2.6e-05  Score=56.81  Aligned_cols=92  Identities=23%  Similarity=0.269  Sum_probs=51.6

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhh----cccceEEEEecCCcCHHHHHHHHHHHhCCCch-------------h
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEK----LFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFS-------------E  108 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~-------------~  108 (183)
                      +..+++|+|++|+|||||++.++.......    ....++|++........ -...+.+.+.....             .
T Consensus        24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (231)
T 4a74_A           24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE-RIREIAQNRGLDPDEVLKHIYVARAFNS  102 (231)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHH-HHHHHHHHTTSCHHHHHHTEEEEECCSH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHH-HHHHHHHHcCCCHHHHhhcEEEEecCCh
Confidence            347899999999999999999987543311    12346776655432222 22333333332211             0


Q ss_pred             HHHHHHHHHHHHHHh-----cCCeEEEEEeCCCCc
Q 035585          109 EAESRRASRLYERLK-----KEKMILVILDNIWKY  138 (183)
Q Consensus       109 ~~~~~~~~~~~~~~~-----~~~~~llvlD~~~~~  138 (183)
                      .........+...+.     ..++-+|++|++...
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~  137 (231)
T 4a74_A          103 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH  137 (231)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHH
T ss_pred             HHHHHHHHHHHHHHHHhcccCCceeEEEECChHHH
Confidence            111111223333333     468899999998754

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=98.22  E-value=1.7e-07  Score=69.03  Aligned_cols=113  Identities=12%  Similarity=0.025  Sum_probs=62.4

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchh---HHHHHHHHHHHHH
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSE---EAESRRASRLYER  121 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~~  121 (183)
                      .+..+++++|+.|+||||++..++.++...  ...+++++...+..   ....+++.++...+.   .........+.+.
T Consensus        10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~--g~kVli~~~~~d~r---~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~   84 (223)
T 2b8t_A           10 KIGWIEFITGPMFAGKTAELIRRLHRLEYA--DVKYLVFKPKIDTR---SIRNIQSRTGTSLPSVEVESAPEILNYIMSN   84 (223)
T ss_dssp             -CCEEEEEECSTTSCHHHHHHHHHHHHHHT--TCCEEEEEECCCGG---GCSSCCCCCCCSSCCEEESSTHHHHHHHHST
T ss_pred             CCcEEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEEeccCch---HHHHHHHhcCCCccccccCCHHHHHHHHHHH
Confidence            445789999999999999999999888765  23455554443321   112334444432221   1111111222222


Q ss_pred             HhcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecChH
Q 035585          122 LKKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDCN  165 (183)
Q Consensus       122 ~~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~~  165 (183)
                      +...+.-+|++||++...  .++.+ ..+.+  .+..||++.++.+
T Consensus        85 ~~~~~~dvViIDEaQ~l~~~~ve~l-~~L~~--~gi~Vil~Gl~~d  127 (223)
T 2b8t_A           85 SFNDETKVIGIDEVQFFDDRICEVA-NILAE--NGFVVIISGLDKN  127 (223)
T ss_dssp             TSCTTCCEEEECSGGGSCTHHHHHH-HHHHH--TTCEEEEECCSBC
T ss_pred             hhCCCCCEEEEecCccCcHHHHHHH-HHHHh--CCCeEEEEecccc
Confidence            222346699999997542  22233 22222  2778999999543

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.22  E-value=7.3e-06  Score=61.05  Aligned_cols=51  Identities=18%  Similarity=0.242  Sum_probs=34.1

Q ss_pred             CCCcccccchHHHHHHHHHHhc---c---------CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           22 NKGYEAFKSRLSTLKSIQDALT---D---------VNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        22 ~~~~~~~~gR~~~l~~l~~~l~---~---------~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ......++|.+.....+.+...   .         .-.+-++|+|++|+|||||++.++....
T Consensus        12 ~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~   74 (254)
T 1ixz_A           12 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR   74 (254)
T ss_dssp             SCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            3344556776666555554322   1         1123489999999999999999998764

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=98.22  E-value=1.2e-06  Score=75.27  Aligned_cols=103  Identities=15%  Similarity=0.138  Sum_probs=58.7

Q ss_pred             ccccchHHHHHHHHHHhcc---------CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHH
Q 035585           26 EAFKSRLSTLKSIQDALTD---------VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHG   96 (183)
Q Consensus        26 ~~~~gR~~~l~~l~~~l~~---------~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (183)
                      ..++|.+..++.+...+..         .+...++++|++|+|||++|+.+++.+.     ...+.++++......    
T Consensus       458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~-----~~~~~i~~s~~~~~~----  528 (758)
T 1r6b_X          458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEYMERH----  528 (758)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGGGCSSSS----
T ss_pred             hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc-----CCEEEEechhhcchh----
Confidence            3577888888777776541         1224799999999999999999998873     224455655432210    


Q ss_pred             HHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585           97 EIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY  138 (183)
Q Consensus        97 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~  138 (183)
                      .+ ..+....+..........+...+.....-+|+|||++..
T Consensus       529 ~~-~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~  569 (758)
T 1r6b_X          529 TV-SRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA  569 (758)
T ss_dssp             CC-SSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGS
T ss_pred             hH-hhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCcccc
Confidence            00 011111111111111112233344456789999999865

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=98.20  E-value=7.1e-07  Score=70.20  Aligned_cols=51  Identities=18%  Similarity=0.249  Sum_probs=32.6

Q ss_pred             cCCeEEEEEeCCCCcccc---cccCcCCCC--CCCCcEEEEEecChHHHhhcCCCC
Q 035585          124 KEKMILVILDNIWKYLDL---ETVGIPFGD--DHRGCKLLLTARDCNVLLNMSLCR  174 (183)
Q Consensus       124 ~~~~~llvlD~~~~~~~~---~~l~~~~~~--~~~~~~iiitsr~~~~~~~~~~~~  174 (183)
                      ..++-+|++||.....+.   ..+...+..  ...|..||++||+.+++..+....
T Consensus       179 ~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv  234 (366)
T 3tui_C          179 ASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCV  234 (366)
T ss_dssp             TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEE
T ss_pred             hcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEE
Confidence            378889999998765431   111122211  123778999999999887655543

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=98.20  E-value=5.1e-06  Score=62.58  Aligned_cols=27  Identities=26%  Similarity=0.365  Sum_probs=23.0

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +..+++|+|++|+|||||++.+.....
T Consensus        49 ~Gei~~liG~NGsGKSTLlk~l~Gl~~   75 (263)
T 2olj_A           49 EGEVVVVIGPSGSGKSTFLRCLNLLED   75 (263)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence            456899999999999999999976543

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.20  E-value=4.1e-06  Score=63.34  Aligned_cols=52  Identities=17%  Similarity=0.240  Sum_probs=36.2

Q ss_pred             cCCCcccccchHHHHHHHHHHhc---c---------CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           21 SNKGYEAFKSRLSTLKSIQDALT---D---------VNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        21 ~~~~~~~~~gR~~~l~~l~~~l~---~---------~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      |......++|.+.....+.+...   .         .-.+-++|+|++|+|||||++.++....
T Consensus        35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~   98 (278)
T 1iy2_A           35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR   98 (278)
T ss_dssp             CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC
Confidence            44455667787776666655432   1         1123489999999999999999998764

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=98.19  E-value=2.1e-06  Score=63.17  Aligned_cols=26  Identities=27%  Similarity=0.385  Sum_probs=22.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +..+++|+|++|+|||||++.+....
T Consensus        29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           29 KGEFVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            44689999999999999999997544

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=98.16  E-value=1.7e-05  Score=62.20  Aligned_cols=86  Identities=16%  Similarity=0.257  Sum_probs=53.2

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchh------HHHHHHHHHHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSE------EAESRRASRLY  119 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~~~  119 (183)
                      +..++.|+|++|+|||||+.+++......  -..++|++........     .+..++.....      .........+.
T Consensus        60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~  132 (349)
T 2zr9_A           60 RGRVIEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD  132 (349)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence            45789999999999999999998776643  3458888877654432     23444432211      11122222222


Q ss_pred             HHHhcCCeEEEEEeCCCCc
Q 035585          120 ERLKKEKMILVILDNIWKY  138 (183)
Q Consensus       120 ~~~~~~~~~llvlD~~~~~  138 (183)
                      ......+.-+||+|++...
T Consensus       133 ~l~~~~~~~lIVIDsl~~l  151 (349)
T 2zr9_A          133 MLVRSGALDIIVIDSVAAL  151 (349)
T ss_dssp             HHHTTTCCSEEEEECGGGC
T ss_pred             HHHhcCCCCEEEEcChHhh
Confidence            2233456789999998654

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=98.15  E-value=3.4e-06  Score=66.26  Aligned_cols=46  Identities=22%  Similarity=0.218  Sum_probs=36.4

Q ss_pred             cccchHHHHHHHHHHhc---------------cCCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           27 AFKSRLSTLKSIQDALT---------------DVNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        27 ~~~gR~~~l~~l~~~l~---------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .++|.+...+.+...+.               ......++++|++|+|||++|+.++..+.
T Consensus        16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~   76 (363)
T 3hws_A           16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD   76 (363)
T ss_dssp             HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            36788888888877662               11446799999999999999999998763

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=98.15  E-value=6.3e-06  Score=62.98  Aligned_cols=28  Identities=25%  Similarity=0.354  Sum_probs=23.9

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      +..+++|+|++|+|||||++.+...+..
T Consensus        63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p   90 (290)
T 2bbs_A           63 RGQLLAVAGSTGAGKTSLLMMIMGELEP   90 (290)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHTTSSCE
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence            4468999999999999999999876643

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=98.15  E-value=2e-05  Score=60.76  Aligned_cols=86  Identities=7%  Similarity=0.082  Sum_probs=55.2

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchh------HHHHHHHHHHHHH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSE------EAESRRASRLYER  121 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~~~~~  121 (183)
                      .++.|+|++|+|||||+.+++........-..++|++........     .+++++.....      .........+.+.
T Consensus        29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~  103 (333)
T 3io5_A           29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQ  103 (333)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence            378999999999999999988776543113458898887665542     25566554322      1122220222233


Q ss_pred             ---HhcCCeEEEEEeCCCCc
Q 035585          122 ---LKKEKMILVILDNIWKY  138 (183)
Q Consensus       122 ---~~~~~~~llvlD~~~~~  138 (183)
                         +.+...-+||+|.+..+
T Consensus       104 l~~i~~~~~~lvVIDSI~aL  123 (333)
T 3io5_A          104 LDAIERGEKVVVFIDSLGNL  123 (333)
T ss_dssp             HHTCCTTCCEEEEEECSTTC
T ss_pred             HHHhhccCceEEEEeccccc
Confidence               34567899999998765

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=98.15  E-value=3.3e-06  Score=62.85  Aligned_cols=26  Identities=27%  Similarity=0.333  Sum_probs=22.6

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +..+++|+|++|+|||||++.+...+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           27 PNSIIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45689999999999999999997654

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=98.14  E-value=4.5e-07  Score=71.28  Aligned_cols=115  Identities=13%  Similarity=0.096  Sum_probs=60.4

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhc
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKK  124 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~  124 (183)
                      .+..+++|+|++|+||||+++.+...+.... -..++.+.-+........ ..+..+.......   ......+...++ 
T Consensus       121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~-~~~i~t~ed~~e~~~~~~-~~~v~q~~~~~~~---~~~~~~La~aL~-  194 (356)
T 3jvv_A          121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTK-YHHILTIEDPIEFVHESK-KCLVNQREVHRDT---LGFSEALRSALR-  194 (356)
T ss_dssp             CSSEEEEEECSTTSCHHHHHHHHHHHHHHHC-CCEEEEEESSCCSCCCCS-SSEEEEEEBTTTB---SCHHHHHHHHTT-
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhcccCCC-CcEEEEccCcHHhhhhcc-ccceeeeeecccc---CCHHHHHHHHhh-
Confidence            3446999999999999999999988776531 111222111110000000 0000000000000   001123334444 


Q ss_pred             CCeEEEEEeCCCCcccccccCcCCCCCCCCcEEEEEecChHHHh
Q 035585          125 EKMILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVLL  168 (183)
Q Consensus       125 ~~~~llvlD~~~~~~~~~~l~~~~~~~~~~~~iiitsr~~~~~~  168 (183)
                      ..+-+|++||+.+...+..+...   ...|..+++|+|+.+...
T Consensus       195 ~~PdvillDEp~d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~  235 (356)
T 3jvv_A          195 EDPDIILVGEMRDLETIRLALTA---AETGHLVFGTLHTTSAAK  235 (356)
T ss_dssp             SCCSEEEESCCCSHHHHHHHHHH---HHTTCEEEEEESCSSHHH
T ss_pred             hCcCEEecCCCCCHHHHHHHHHH---HhcCCEEEEEEccChHHH
Confidence            78899999999865444333222   223667999999988764

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=98.14  E-value=5e-06  Score=62.93  Aligned_cols=26  Identities=19%  Similarity=0.272  Sum_probs=22.6

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +..+++|+|++|+|||||++.+...+
T Consensus        44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           44 PGKVTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            44689999999999999999997654

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=98.13  E-value=6.2e-06  Score=67.53  Aligned_cols=52  Identities=17%  Similarity=0.240  Sum_probs=37.1

Q ss_pred             cCCCcccccchHHHHHHHHHHhc---c---------CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           21 SNKGYEAFKSRLSTLKSIQDALT---D---------VNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        21 ~~~~~~~~~gR~~~l~~l~~~l~---~---------~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +.....++.|.+.....+.+...   +         .-+.-++|+|++|+|||+|++.++....
T Consensus        26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~   89 (499)
T 2dhr_A           26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR   89 (499)
T ss_dssp             CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred             CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            34445667888877766665432   1         1123599999999999999999998754

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=98.12  E-value=3.4e-05  Score=61.45  Aligned_cols=92  Identities=15%  Similarity=0.229  Sum_probs=53.6

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhh----cccceEEEEecCCcCHHHHHHHHHHHhCCCchh-------------
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEK----LFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSE-------------  108 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-------------  108 (183)
                      ...++.|+|++|+|||||+..++.......    ....++|++......... ...+++.++.....             
T Consensus       177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~r-l~~~a~~~gl~~~~vleni~~~~~~~~  255 (400)
T 3lda_A          177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVR-LVSIAQRFGLDPDDALNNVAYARAYNA  255 (400)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHH-HHHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHH-HHHHHHHcCCChHhHhhcEEEeccCCh
Confidence            446899999999999999998764332211    123478887765433332 23355555432210             


Q ss_pred             HHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585          109 EAESRRASRLYERLKKEKMILVILDNIWKY  138 (183)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~llvlD~~~~~  138 (183)
                      .........+...+...+.-+||+|++...
T Consensus       256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t~~  285 (400)
T 3lda_A          256 DHQLRLLDAAAQMMSESRFSLIVVDSVMAL  285 (400)
T ss_dssp             HHHHHHHHHHHHHHHHSCEEEEEEETGGGG
T ss_pred             HHHHHHHHHHHHHHHhcCCceEEecchhhh
Confidence            111122333444444567899999997643

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.12  E-value=6.2e-06  Score=72.24  Aligned_cols=125  Identities=18%  Similarity=0.160  Sum_probs=66.8

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhH-Hhhhhc--ccceEEEEecCC-------cCH-----------HHHHHHHHHHhCC
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQ-ASEEKL--FDQVVFSEVSQT-------PDI-----------KKIHGEIAEKLGL  104 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~-~~~~~~--~~~~~~~~~~~~-------~~~-----------~~~~~~i~~~l~~  104 (183)
                      +...++|+|++|+|||||++.+..- ......  ...+.|  ..+.       .+.           ..-...+++.++.
T Consensus       460 ~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~--v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL  537 (986)
T 2iw3_A          460 RARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVY--VEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGF  537 (986)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEE--TTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEE--EcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCC
Confidence            4467999999999999999999831 100000  001222  2211       111           1223344555554


Q ss_pred             Cc-------hhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcccc---cccCcCCCCCCCCcEEEEEecChHHHhhcCCCC
Q 035585          105 EF-------SEEAESRRASRLYERLKKEKMILVILDNIWKYLDL---ETVGIPFGDDHRGCKLLLTARDCNVLLNMSLCR  174 (183)
Q Consensus       105 ~~-------~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~~---~~l~~~~~~~~~~~~iiitsr~~~~~~~~~~~~  174 (183)
                      ..       ...+..+.....+......++-+|++||..+..+.   ..+...+..  .|..+|++||+...+..+....
T Consensus       538 ~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adri  615 (986)
T 2iw3_A          538 TDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYI  615 (986)
T ss_dssp             CHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEE
T ss_pred             ChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEE
Confidence            21       11122222222222222378899999998766442   222222222  4678999999999888665543

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=98.11  E-value=5.7e-06  Score=65.24  Aligned_cols=25  Identities=24%  Similarity=0.355  Sum_probs=22.6

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      ...++++|++|+|||++|+.+++.+
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~l   96 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKHL   96 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHh
Confidence            4579999999999999999999876

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=98.10  E-value=6.2e-06  Score=63.69  Aligned_cols=70  Identities=16%  Similarity=0.212  Sum_probs=42.1

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEe--cCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhc
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEV--SQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKK  124 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~  124 (183)
                      .+.+.|+|++|+|||+|+.+++.. .    ...++|+..  ....+.          +.     .........+.+.+..
T Consensus       123 gsviLI~GpPGsGKTtLAlqlA~~-~----G~~VlyIs~~~eE~v~~----------~~-----~~le~~l~~i~~~l~~  182 (331)
T 2vhj_A          123 SGMVIVTGKGNSGKTPLVHALGEA-L----GGKDKYATVRFGEPLSG----------YN-----TDFNVFVDDIARAMLQ  182 (331)
T ss_dssp             SEEEEEECSCSSSHHHHHHHHHHH-H----HTTSCCEEEEBSCSSTT----------CB-----CCHHHHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHh-C----CCCEEEEEecchhhhhh----------hh-----cCHHHHHHHHHHHHhh
Confidence            356789999999999999999886 1    123456666  221000          00     1112223344445543


Q ss_pred             CCeEEEEEeCCCCc
Q 035585          125 EKMILVILDNIWKY  138 (183)
Q Consensus       125 ~~~~llvlD~~~~~  138 (183)
                      .+  +||||+++..
T Consensus       183 ~~--LLVIDsI~aL  194 (331)
T 2vhj_A          183 HR--VIVIDSLKNV  194 (331)
T ss_dssp             CS--EEEEECCTTT
T ss_pred             CC--EEEEeccccc
Confidence            33  9999999865

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=98.09  E-value=8.2e-06  Score=58.62  Aligned_cols=115  Identities=22%  Similarity=0.177  Sum_probs=67.8

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCc-CHHHHHHHHHHHhCC-----------Cchh-----
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTP-DIKKIHGEIAEKLGL-----------EFSE-----  108 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~l~~-----------~~~~-----  108 (183)
                      ....+.|++.+|.||||+|-.+.-+.-..  -..+.++++.... ..-+  ..++..+..           ..+.     
T Consensus        27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~--G~rV~~vQF~Kg~~~~gE--~~~l~~L~v~~~~~g~gf~~~~~~~~~~~  102 (196)
T 1g5t_A           27 ERGIIIVFTGNGKGKTTAAFGTAARAVGH--GKNVGVVQFIKGTWPNGE--RNLLEPHGVEFQVMATGFTWETQNREADT  102 (196)
T ss_dssp             CCCCEEEEESSSSCHHHHHHHHHHHHHHT--TCCEEEEESSCCSSCCHH--HHHHGGGTCEEEECCTTCCCCGGGHHHHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeCCCCCccH--HHHHHhCCcEEEEcccccccCCCCcHHHH
Confidence            45788999999999999999988777654  3356777665531 1111  223333310           0111     


Q ss_pred             HHHHHHHHHHHHHHhcCCeEEEEEeCCCCc-----ccccccCcCCCCCCCCcEEEEEecCh
Q 035585          109 EAESRRASRLYERLKKEKMILVILDNIWKY-----LDLETVGIPFGDDHRGCKLLLTARDC  164 (183)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~llvlD~~~~~-----~~~~~l~~~~~~~~~~~~iiitsr~~  164 (183)
                      .............+..++--+|||||+...     ...+.+...+........+|+|+|..
T Consensus       103 ~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a  163 (196)
T 1g5t_A          103 AACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC  163 (196)
T ss_dssp             HHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred             HHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence            111112233444444466779999998432     33444445555666677899999965

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=98.09  E-value=3.5e-06  Score=65.51  Aligned_cols=53  Identities=26%  Similarity=0.273  Sum_probs=42.1

Q ss_pred             hcCCCcccccchHHHHHHHHHHhcc-----CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           20 KSNKGYEAFKSRLSTLKSIQDALTD-----VNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        20 ~~~~~~~~~~gR~~~l~~l~~~l~~-----~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ..+.....++|++..++.+...+..     .....++|+|++|+|||||++.++..+.
T Consensus        19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~   76 (334)
T 1in4_A           19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ   76 (334)
T ss_dssp             TSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred             cCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            4456667788998888887776642     3447799999999999999999998864

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=98.05  E-value=6.5e-05  Score=58.11  Aligned_cols=92  Identities=20%  Similarity=0.315  Sum_probs=55.5

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhh-c---ccceEEEEecCCcCHHHHHHHHHHHhCCCchh-------------
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEK-L---FDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSE-------------  108 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-------------  108 (183)
                      ...++.|+|++|+|||+|+.+++....... .   ...++|++.........+. .++..++.....             
T Consensus       106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~  184 (324)
T 2z43_A          106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINT  184 (324)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred             CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCH
Confidence            446899999999999999999987643221 0   2358888877654333332 334444432210             


Q ss_pred             HHHHHHHHHHHHHHhc-CCeEEEEEeCCCCc
Q 035585          109 EAESRRASRLYERLKK-EKMILVILDNIWKY  138 (183)
Q Consensus       109 ~~~~~~~~~~~~~~~~-~~~~llvlD~~~~~  138 (183)
                      ......+..+...+.+ .+.-+||+|.+..+
T Consensus       185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l  215 (324)
T 2z43_A          185 DHQIAIVDDLQELVSKDPSIKLIVVDSVTSH  215 (324)
T ss_dssp             HHHHHHHHHHHHHHHHCTTEEEEEETTTTHH
T ss_pred             HHHHHHHHHHHHHHHhccCCCEEEEeCcHHH
Confidence            1111223344444444 67889999998754

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=98.05  E-value=6.7e-06  Score=64.51  Aligned_cols=27  Identities=33%  Similarity=0.521  Sum_probs=23.2

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +..+++|.|++|+|||||++.++....
T Consensus        40 ~Ge~~~llGpnGsGKSTLLr~iaGl~~   66 (355)
T 1z47_A           40 EGEMVGLLGPSGSGKTTILRLIAGLER   66 (355)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            447899999999999999999986543

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.03  E-value=2.4e-05  Score=65.52  Aligned_cols=26  Identities=35%  Similarity=0.581  Sum_probs=22.7

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +..+++|+|++|+|||||++.+...+
T Consensus       102 ~Gei~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          102 PGQVLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCC
Confidence            45799999999999999999998644

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=98.03  E-value=5.6e-06  Score=64.80  Aligned_cols=27  Identities=22%  Similarity=0.222  Sum_probs=23.2

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +..+++|.|++|+|||||++.++....
T Consensus        25 ~Ge~~~llGpnGsGKSTLLr~iaGl~~   51 (348)
T 3d31_A           25 SGEYFVILGPTGAGKTLFLELIAGFHV   51 (348)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred             CCCEEEEECCCCccHHHHHHHHHcCCC
Confidence            447899999999999999999986543

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=98.02  E-value=5.1e-05  Score=59.80  Aligned_cols=86  Identities=21%  Similarity=0.257  Sum_probs=53.2

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchh------HHHHHHHHHHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSE------EAESRRASRLY  119 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~~~  119 (183)
                      +..++.|+|++|+|||+|+.+++......  -..++|++........     .+..++.....      .........+.
T Consensus        73 ~G~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~  145 (366)
T 1xp8_A           73 RGRITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME  145 (366)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence            44689999999999999999998876543  3468898887654432     23344432110      11122222222


Q ss_pred             HHHhcCCeEEEEEeCCCCc
Q 035585          120 ERLKKEKMILVILDNIWKY  138 (183)
Q Consensus       120 ~~~~~~~~~llvlD~~~~~  138 (183)
                      ........-+||||.+..+
T Consensus       146 ~l~~~~~~~lVVIDsl~~l  164 (366)
T 1xp8_A          146 LLVRSGAIDVVVVDSVAAL  164 (366)
T ss_dssp             HHHTTTCCSEEEEECTTTC
T ss_pred             HHHhcCCCCEEEEeChHHh
Confidence            2233356779999998754

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=98.02  E-value=7e-05  Score=58.46  Aligned_cols=92  Identities=17%  Similarity=0.287  Sum_probs=54.7

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhh----cccceEEEEecCCcCHHHHHHHHHHHhCCCch-------------h
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEK----LFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFS-------------E  108 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~-------------~  108 (183)
                      ...++.|+|++|+|||+|+.+++.......    ....++|++.........+. .++..++....             .
T Consensus       121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~~~~~l~~l~~~~~~~~  199 (343)
T 1v5w_A          121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVDHDAVLDNVLYARAYTS  199 (343)
T ss_dssp             SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCST
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCCHHHHHhceeEeecCCH
Confidence            446899999999999999999987642211    12358888887754443332 33344433211             0


Q ss_pred             HHHHHHHHHHHHHHhc--CCeEEEEEeCCCCc
Q 035585          109 EAESRRASRLYERLKK--EKMILVILDNIWKY  138 (183)
Q Consensus       109 ~~~~~~~~~~~~~~~~--~~~~llvlD~~~~~  138 (183)
                      .........+...+..  .+.-+||+|.+..+
T Consensus       200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l  231 (343)
T 1v5w_A          200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIMAL  231 (343)
T ss_dssp             THHHHHHHHHHHHHHHSCSSEEEEEEETSGGG
T ss_pred             HHHHHHHHHHHHHHHhcCCCccEEEEechHHH
Confidence            1111222233344444  67889999998754

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.01  E-value=6.4e-05  Score=53.90  Aligned_cols=27  Identities=33%  Similarity=0.421  Sum_probs=23.6

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      .+..+++|+|++|+||||+++.+...+
T Consensus        27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~   53 (200)
T 4eun_A           27 EPTRHVVVMGVSGSGKTTIAHGVADET   53 (200)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            456799999999999999999998875

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=98.00  E-value=7.1e-05  Score=58.57  Aligned_cols=92  Identities=22%  Similarity=0.244  Sum_probs=51.9

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcc----cceEEEEecCCcCHHHHHHHHHHHhCCCch-------------h
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLF----DQVVFSEVSQTPDIKKIHGEIAEKLGLEFS-------------E  108 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~-------------~  108 (183)
                      ...++.|+|++|+|||||+..++.........    ..++|++........ -...+++.+.....             .
T Consensus       130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~-~i~~i~q~~~~~~~~v~~ni~~~~~~~~  208 (349)
T 1pzn_A          130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE-RIREIAQNRGLDPDEVLKHIYVARAFNS  208 (349)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHH-HHHHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHH-HHHHHHHHcCCCHHHHhhCEEEEecCCh
Confidence            45789999999999999999998876321011    235787765543222 22233333322110             1


Q ss_pred             HHHHHHHHHHHHHHhc-----CCeEEEEEeCCCCc
Q 035585          109 EAESRRASRLYERLKK-----EKMILVILDNIWKY  138 (183)
Q Consensus       109 ~~~~~~~~~~~~~~~~-----~~~~llvlD~~~~~  138 (183)
                      ......+..+...+..     .++-+||+|++...
T Consensus       209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~  243 (349)
T 1pzn_A          209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH  243 (349)
T ss_dssp             HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred             HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHh
Confidence            1111122223333333     57899999998765

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.00  E-value=8.9e-06  Score=67.25  Aligned_cols=26  Identities=46%  Similarity=0.723  Sum_probs=22.4

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +..+++|+|++|+|||||++.+...+
T Consensus        24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           24 NNTILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            44689999999999999999997644

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=97.99  E-value=9.5e-06  Score=63.83  Aligned_cols=27  Identities=26%  Similarity=0.370  Sum_probs=23.2

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ...+++|.|++|+|||||++.++....
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~   54 (362)
T 2it1_A           28 DGEFMALLGPSGSGKSTLLYTIAGIYK   54 (362)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCEEEEECCCCchHHHHHHHHhcCCC
Confidence            457899999999999999999986543

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.98  E-value=2.4e-05  Score=56.26  Aligned_cols=44  Identities=18%  Similarity=0.318  Sum_probs=34.8

Q ss_pred             chHHHHHHHHHHhcc---CCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           30 SRLSTLKSIQDALTD---VNVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        30 gR~~~l~~l~~~l~~---~~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      .|.+.++.|.+.+..   .+..+++|.|++|+||||+++.+...+..
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~   48 (201)
T 1rz3_A            2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE   48 (201)
T ss_dssp             CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            366677777776652   35578999999999999999999987754

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.96  E-value=6.3e-05  Score=59.05  Aligned_cols=86  Identities=23%  Similarity=0.343  Sum_probs=52.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchh-----HHHHHHHHHHHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSE-----EAESRRASRLYE  120 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~~  120 (183)
                      +..++.|+|++|+|||||+.+++......  -..++|++.....+..     .+..++.....     ....+....+..
T Consensus        62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~--g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~  134 (356)
T 1u94_A           62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD  134 (356)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHH
Confidence            45789999999999999999998877653  3468888886654432     13344432111     001111222222


Q ss_pred             HH-hcCCeEEEEEeCCCCc
Q 035585          121 RL-KKEKMILVILDNIWKY  138 (183)
Q Consensus       121 ~~-~~~~~~llvlD~~~~~  138 (183)
                      .+ ...+.-+||||.+..+
T Consensus       135 ~l~~~~~~~lVVIDsl~~l  153 (356)
T 1u94_A          135 ALARSGAVDVIVVDSVAAL  153 (356)
T ss_dssp             HHHHHTCCSEEEEECGGGC
T ss_pred             HHHhccCCCEEEEcCHHHh
Confidence            22 3356779999997644

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=97.96  E-value=1.4e-05  Score=66.98  Aligned_cols=126  Identities=21%  Similarity=0.257  Sum_probs=68.2

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhh---cc-cceEEEEecCC------cCHHHHH--------------HHHHHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEK---LF-DQVVFSEVSQT------PDIKKIH--------------GEIAEK  101 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~---~~-~~~~~~~~~~~------~~~~~~~--------------~~i~~~  101 (183)
                      +..+++|.|++|+|||||++.+...+....   .+ ..+.|+  ++.      .+..+..              ..+++.
T Consensus       381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v--~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~  458 (607)
T 3bk7_A          381 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYK--PQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKP  458 (607)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEE--CSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEE--ecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHH
Confidence            456899999999999999999998665321   01 123332  221      1222221              122233


Q ss_pred             hCCC------chhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcccccc---cCcCCCC--CCCCcEEEEEecChHHHhhc
Q 035585          102 LGLE------FSEEAESRRASRLYERLKKEKMILVILDNIWKYLDLET---VGIPFGD--DHRGCKLLLTARDCNVLLNM  170 (183)
Q Consensus       102 l~~~------~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~~~~---l~~~~~~--~~~~~~iiitsr~~~~~~~~  170 (183)
                      ++..      ....+..+.....+......++-+|++||.....+...   +...+..  ...|..+|++|||...+..+
T Consensus       459 ~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~  538 (607)
T 3bk7_A          459 LGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYV  538 (607)
T ss_dssp             HTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             cCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence            3221      11112223222333333347888999999876644222   1122211  12366799999999988865


Q ss_pred             CCC
Q 035585          171 SLC  173 (183)
Q Consensus       171 ~~~  173 (183)
                      ...
T Consensus       539 adr  541 (607)
T 3bk7_A          539 SDR  541 (607)
T ss_dssp             CSE
T ss_pred             CCE
Confidence            554

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.96  E-value=6.8e-05  Score=55.10  Aligned_cols=40  Identities=20%  Similarity=0.297  Sum_probs=30.7

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ   87 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~   87 (183)
                      +..+++|+|++|+|||||+.+++......  -..++|+....
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e~   61 (247)
T 2dr3_A           22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALEE   61 (247)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESSS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccC
Confidence            34689999999999999999888776543  34577776554

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.95  E-value=5.4e-05  Score=58.20  Aligned_cols=89  Identities=19%  Similarity=0.182  Sum_probs=50.0

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCc-CHHHHHHHHHHHhCCCch----hHHHHHH-HHHHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTP-DIKKIHGEIAEKLGLEFS----EEAESRR-ASRLY  119 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~-~~~~~  119 (183)
                      ++.+++|+|++|+||||++..++..+...  -..+.++...... ...+.+...++..+....    ....... ...+.
T Consensus       103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~--g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~  180 (306)
T 1vma_A          103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE--GKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA  180 (306)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHHHHHhc--CCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence            45689999999999999999999888754  3346666554322 222222334444432211    1111111 12222


Q ss_pred             HHHhcCCeEEEEEeCCCC
Q 035585          120 ERLKKEKMILVILDNIWK  137 (183)
Q Consensus       120 ~~~~~~~~~llvlD~~~~  137 (183)
                      ..+. .+.-++++|.+-.
T Consensus       181 ~a~~-~~~dvvIiDtpg~  197 (306)
T 1vma_A          181 HALA-RNKDVVIIDTAGR  197 (306)
T ss_dssp             HHHH-TTCSEEEEEECCC
T ss_pred             HHHh-cCCCEEEEECCCc
Confidence            2233 5566889998753

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=97.94  E-value=1.5e-05  Score=68.62  Aligned_cols=92  Identities=16%  Similarity=0.226  Sum_probs=57.6

Q ss_pred             cccchHHHHHHHHHHhc-------------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHH
Q 035585           27 AFKSRLSTLKSIQDALT-------------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKK   93 (183)
Q Consensus        27 ~~~gR~~~l~~l~~~l~-------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (183)
                      ...|-++..+.|.+.+.             ...++-++++||+|+|||.+|+.++......       ++.+..      
T Consensus       478 diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~-------f~~v~~------  544 (806)
T 3cf2_A          478 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-------FISIKG------  544 (806)
T ss_dssp             TCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE-------EEECCH------
T ss_pred             HhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc-------eEEecc------
Confidence            34455555555555432             1234568999999999999999999986543       222221      


Q ss_pred             HHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585           94 IHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY  138 (183)
Q Consensus        94 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~  138 (183)
                        ..++......     ....+..++...+...+.+|+|||+|..
T Consensus       545 --~~l~s~~vGe-----se~~vr~lF~~Ar~~~P~IifiDEiDsl  582 (806)
T 3cf2_A          545 --PELLTMWFGE-----SEANVREIFDKARQAAPCVLFFDELDSI  582 (806)
T ss_dssp             --HHHHTTTCSS-----CHHHHHHHHHHHHTTCSEEEECSCGGGC
T ss_pred             --chhhccccch-----HHHHHHHHHHHHHHcCCceeechhhhHH
Confidence              1222221111     1234567777777778999999999854

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=97.93  E-value=4.5e-05  Score=63.65  Aligned_cols=28  Identities=29%  Similarity=0.397  Sum_probs=23.6

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .+...++|+|++|+|||||++.+...+.
T Consensus       367 ~~G~~~~ivG~sGsGKSTll~~l~g~~~  394 (582)
T 3b5x_A          367 PQGKTVALVGRSGSGKSTIANLFTRFYD  394 (582)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3457899999999999999999986553

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.92  E-value=1.4e-05  Score=57.75  Aligned_cols=41  Identities=24%  Similarity=0.354  Sum_probs=32.2

Q ss_pred             HHHHHHHHHhc--cCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           33 STLKSIQDALT--DVNVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        33 ~~l~~l~~~l~--~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      +.++.|.+.+.  ..+..+++|.|++|+|||||++.+...+..
T Consensus         6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~   48 (208)
T 3c8u_A            6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSA   48 (208)
T ss_dssp             HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            45556666554  245679999999999999999999988764

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=97.92  E-value=3e-06  Score=65.21  Aligned_cols=27  Identities=22%  Similarity=0.343  Sum_probs=23.0

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|+|++|+|||||++.+...+.
T Consensus        79 ~Ge~vaivG~sGsGKSTLl~ll~gl~~  105 (306)
T 3nh6_A           79 PGQTLALVGPSGAGKSTILRLLFRFYD  105 (306)
T ss_dssp             TTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCchHHHHHHHHHcCCC
Confidence            456899999999999999999976543

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=97.91  E-value=2.2e-05  Score=64.94  Aligned_cols=127  Identities=21%  Similarity=0.237  Sum_probs=68.5

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhh---cc-cceEEEEecCC------cCHHHHHHHH--------------HHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEK---LF-DQVVFSEVSQT------PDIKKIHGEI--------------AEK  101 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~---~~-~~~~~~~~~~~------~~~~~~~~~i--------------~~~  101 (183)
                      +..+++|+|++|+|||||++.++.......   .+ ..+.|+  ++.      .+..+.....              ++.
T Consensus       311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v--~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~  388 (538)
T 1yqt_A          311 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYK--PQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKP  388 (538)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEE--CSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEE--ecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHH
Confidence            457899999999999999999998765321   01 113332  221      1222222111              111


Q ss_pred             hCCC------chhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcccccc---cCcCCCCC--CCCcEEEEEecChHHHhhc
Q 035585          102 LGLE------FSEEAESRRASRLYERLKKEKMILVILDNIWKYLDLET---VGIPFGDD--HRGCKLLLTARDCNVLLNM  170 (183)
Q Consensus       102 l~~~------~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~~~~---l~~~~~~~--~~~~~iiitsr~~~~~~~~  170 (183)
                      ++..      ....+..+.....+......++-+|++||.....+...   +...+...  ..|..||++|||.+.+..+
T Consensus       389 ~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~  468 (538)
T 1yqt_A          389 LGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYV  468 (538)
T ss_dssp             TTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHH
T ss_pred             cCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence            1111      01112222223333333347889999999886654322   11222111  2366799999999988866


Q ss_pred             CCCC
Q 035585          171 SLCR  174 (183)
Q Consensus       171 ~~~~  174 (183)
                      ....
T Consensus       469 ~drv  472 (538)
T 1yqt_A          469 SDRL  472 (538)
T ss_dssp             CSEE
T ss_pred             CCEE
Confidence            5543

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=97.90  E-value=6.3e-06  Score=64.00  Aligned_cols=52  Identities=21%  Similarity=0.203  Sum_probs=39.0

Q ss_pred             cCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           21 SNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        21 ~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ++.....++|.+.....+...........++|+|++|+|||++|+.+++...
T Consensus        19 ~~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           19 PVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             CCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             CCCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence            3445567899988766655444333345699999999999999999998765

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=97.89  E-value=0.00011  Score=56.59  Aligned_cols=92  Identities=16%  Similarity=0.261  Sum_probs=54.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhh----------hcc----cceEEEEecCCcCHHHHHHHHHHHhCCCch----
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEE----------KLF----DQVVFSEVSQTPDIKKIHGEIAEKLGLEFS----  107 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~----------~~~----~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~----  107 (183)
                      ...++.|+|++|+|||+|+.+++......          ..-    ..++|++.........+. .++..++....    
T Consensus        97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~-~~~~~~g~~~~~~~~  175 (322)
T 2i1q_A           97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIM-QMAEHAGIDGQTVLD  175 (322)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHH-HHHHHHTCCHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHhc
Confidence            44689999999999999999998753211          011    458888877654333333 23344443221    


Q ss_pred             ---------hHHHHHHHHHHHHHHhc-CCeEEEEEeCCCCc
Q 035585          108 ---------EEAESRRASRLYERLKK-EKMILVILDNIWKY  138 (183)
Q Consensus       108 ---------~~~~~~~~~~~~~~~~~-~~~~llvlD~~~~~  138 (183)
                               ..........+...+.+ .+.-+||+|.+..+
T Consensus       176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l  216 (322)
T 2i1q_A          176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTST  216 (322)
T ss_dssp             TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHH
T ss_pred             CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHH
Confidence                     01111123334444554 56789999998644

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.87  E-value=0.00016  Score=58.28  Aligned_cols=39  Identities=28%  Similarity=0.242  Sum_probs=29.8

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEec
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVS   86 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~   86 (183)
                      ++.+++++|++|+||||++..++..+...  -..+..+.+.
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~--G~kVllv~~D  137 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKR--GYKVGVVCSD  137 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEECC
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHC--CCeEEEEeCC
Confidence            46799999999999999999999888764  2234444443

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.85  E-value=6.2e-05  Score=57.62  Aligned_cols=87  Identities=18%  Similarity=0.171  Sum_probs=48.0

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC-cCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhc
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT-PDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKK  124 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~  124 (183)
                      +..+++++|++|+||||++..++..+.... -..+.++..... ....+.+....+..+...........+...+..+  
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~-G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~--  180 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEK-HKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF--  180 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHHHTT-CCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG--
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh--
Confidence            457999999999999999999998887521 224666655432 2333334444433332221100011122222222  


Q ss_pred             CCeEEEEEeCC
Q 035585          125 EKMILVILDNI  135 (183)
Q Consensus       125 ~~~~llvlD~~  135 (183)
                      .+.-++|+|-.
T Consensus       181 ~~~dlvIiDT~  191 (296)
T 2px0_A          181 SEYDHVFVDTA  191 (296)
T ss_dssp             GGSSEEEEECC
T ss_pred             cCCCEEEEeCC
Confidence            44567888854

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=97.83  E-value=1.2e-05  Score=66.41  Aligned_cols=48  Identities=21%  Similarity=0.250  Sum_probs=32.1

Q ss_pred             cCCeEEEEEeCCCCccccc------ccCcCCCCCCCCcEEEEEecChHHHhhcCCC
Q 035585          124 KEKMILVILDNIWKYLDLE------TVGIPFGDDHRGCKLLLTARDCNVLLNMSLC  173 (183)
Q Consensus       124 ~~~~~llvlD~~~~~~~~~------~l~~~~~~~~~~~~iiitsr~~~~~~~~~~~  173 (183)
                      ..++-+|++||..+..+..      .++..+..  .|..||++||+..++..+...
T Consensus       174 ~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~--~g~tvi~vsHd~~~~~~~~dr  227 (538)
T 1yqt_A          174 LRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE--EGKSVLVVEHDLAVLDYLSDI  227 (538)
T ss_dssp             HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHCSE
T ss_pred             hcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCE
Confidence            3788999999987664422      12222222  367799999999988765443

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.82  E-value=5.5e-05  Score=62.33  Aligned_cols=40  Identities=25%  Similarity=0.183  Sum_probs=27.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHH-hHHhhhhcccceEEEEecC
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFA-RQASEEKLFDQVVFSEVSQ   87 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~-~~~~~~~~~~~~~~~~~~~   87 (183)
                      +..+++|.|++|+|||||++.++ .-+...  -.+.+|++...
T Consensus        38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~--~~g~i~v~g~~   78 (525)
T 1tf7_A           38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEF--DEPGVFVTFEE   78 (525)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHHH--CCCEEEEESSS
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHhC--CCCEEEEEEeC
Confidence            45799999999999999999953 222221  23466665443

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.80  E-value=0.00014  Score=55.62  Aligned_cols=88  Identities=19%  Similarity=0.226  Sum_probs=51.4

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCc-CHHHHHHHHHHHhCCCch----hHHHHHHHHHHHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTP-DIKKIHGEIAEKLGLEFS----EEAESRRASRLYE  120 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~~  120 (183)
                      +..+++++|++|+||||++..++..+...  -..+.++...... .....+..+.+..+....    ...+.......+.
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~--~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~  174 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE  174 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHT--TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHH
Confidence            45689999999999999999999888754  3346666655432 222223334444433221    1112222233344


Q ss_pred             HHhcCCeEEEEEeCC
Q 035585          121 RLKKEKMILVILDNI  135 (183)
Q Consensus       121 ~~~~~~~~llvlD~~  135 (183)
                      .+...+.-++|+|..
T Consensus       175 ~~~~~~~D~viiDtp  189 (295)
T 1ls1_A          175 KARLEARDLILVDTA  189 (295)
T ss_dssp             HHHHHTCCEEEEECC
T ss_pred             HHHhCCCCEEEEeCC
Confidence            443245568899987

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=97.79  E-value=2.6e-05  Score=64.50  Aligned_cols=127  Identities=17%  Similarity=0.269  Sum_probs=66.6

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhh---ccc--ceEEEEecCC------cCHHHHHHH---------------HH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEK---LFD--QVVFSEVSQT------PDIKKIHGE---------------IA   99 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~---~~~--~~~~~~~~~~------~~~~~~~~~---------------i~   99 (183)
                      +..+++|+|++|+|||||++.++.......   .+.  .+.++  ++.      ....+....               ++
T Consensus       293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~--~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l  370 (538)
T 3ozx_A          293 EGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYK--PQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVT  370 (538)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEE--CSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEee--chhcccccCCCHHHHHHHhhhhccchhHHHHHHHH
Confidence            446899999999999999999987665321   011  12221  211      122222111               11


Q ss_pred             HHhCCC------chhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcccccc---cCcCCCC--CCCCcEEEEEecChHHHh
Q 035585          100 EKLGLE------FSEEAESRRASRLYERLKKEKMILVILDNIWKYLDLET---VGIPFGD--DHRGCKLLLTARDCNVLL  168 (183)
Q Consensus       100 ~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~~~~---l~~~~~~--~~~~~~iiitsr~~~~~~  168 (183)
                      +.++..      ....+..+...-.+......++-+|++||.....+...   +...+..  ...|..||++|||.+.+.
T Consensus       371 ~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~  450 (538)
T 3ozx_A          371 KRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHD  450 (538)
T ss_dssp             TTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred             HHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence            111110      11112222222233333337889999999876644221   1111111  123667999999999888


Q ss_pred             hcCCCC
Q 035585          169 NMSLCR  174 (183)
Q Consensus       169 ~~~~~~  174 (183)
                      .+....
T Consensus       451 ~~aDri  456 (538)
T 3ozx_A          451 YIADRI  456 (538)
T ss_dssp             HHCSEE
T ss_pred             HhCCEE
Confidence            665543

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.78  E-value=0.00016  Score=56.07  Aligned_cols=39  Identities=23%  Similarity=0.248  Sum_probs=29.5

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEe
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEV   85 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~   85 (183)
                      .++.+++|+|++|+||||+++.++..+...  -..+.+...
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~--~g~V~l~g~  165 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH--GFSVVIAAS  165 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCEEEEEee
Confidence            346799999999999999999999887654  223444433

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=97.77  E-value=1.9e-05  Score=61.08  Aligned_cols=50  Identities=12%  Similarity=0.118  Sum_probs=40.8

Q ss_pred             cCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           21 SNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        21 ~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .+.....++|++..+..+...+...  ..++++|++|+|||+|++.+...+.
T Consensus        22 ~~~~~~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~~   71 (331)
T 2r44_A           22 IDEVGKVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTMD   71 (331)
T ss_dssp             HHHHTTTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred             HHHhccceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHhC
Confidence            3444567899999999888877653  5789999999999999999988764

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=97.76  E-value=1.8e-05  Score=69.19  Aligned_cols=23  Identities=17%  Similarity=0.132  Sum_probs=20.7

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFA   68 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~   68 (183)
                      ...+++|+||+|+||||+++.+.
T Consensus       661 ~g~i~~ItGpNGsGKSTlLr~ia  683 (934)
T 3thx_A          661 KQMFHIITGPNMGGKSTYIRQTG  683 (934)
T ss_dssp             TBCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            45799999999999999999983

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=97.75  E-value=0.00026  Score=54.55  Aligned_cols=51  Identities=20%  Similarity=0.267  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEec
Q 035585           32 LSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVS   86 (183)
Q Consensus        32 ~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~   86 (183)
                      -..++.+..-+  .+..++.|.|++|+|||+|+.+++.....+.  ..++|+...
T Consensus        55 ~~~LD~~lgGl--~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE  105 (315)
T 3bh0_A           55 FTELDRMTYGY--KRRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE  105 (315)
T ss_dssp             CHHHHHHHSSB--CTTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS
T ss_pred             hHHHHhhcCCC--CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC
Confidence            34555554212  3446899999999999999999987766542  467787765

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.74  E-value=0.00013  Score=58.64  Aligned_cols=39  Identities=23%  Similarity=0.146  Sum_probs=30.5

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEec
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVS   86 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~   86 (183)
                      ++.+++++|++|+||||++..++..+...  -..+..+.+.
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~--G~kVllv~~D  134 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR--GYKVGLVAAD  134 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHT--TCCEEEEEEC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEecC
Confidence            36789999999999999999999888764  2345555554

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=97.73  E-value=3.5e-05  Score=64.59  Aligned_cols=47  Identities=26%  Similarity=0.285  Sum_probs=31.5

Q ss_pred             cCCeEEEEEeCCCCccccc------ccCcCCCCCCCCcEEEEEecChHHHhhcCC
Q 035585          124 KEKMILVILDNIWKYLDLE------TVGIPFGDDHRGCKLLLTARDCNVLLNMSL  172 (183)
Q Consensus       124 ~~~~~llvlD~~~~~~~~~------~l~~~~~~~~~~~~iiitsr~~~~~~~~~~  172 (183)
                      ..++-+|++||.....+..      .++..+..  .|..||++|||..++..+..
T Consensus       244 ~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~--~g~tvIivsHdl~~~~~~ad  296 (607)
T 3bk7_A          244 LRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN--EGKAVLVVEHDLAVLDYLSD  296 (607)
T ss_dssp             HSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHCS
T ss_pred             hcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEecChHHHHhhCC
Confidence            3788999999987664422      22222222  36789999999998776543

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.71  E-value=0.00043  Score=52.91  Aligned_cols=40  Identities=20%  Similarity=0.141  Sum_probs=31.1

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT   88 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~   88 (183)
                      ..+++++|++|+||||++..++..+...  -..+.++.....
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~--g~~v~l~~~D~~  137 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK--GFKVGLVGADVY  137 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHT--TCCEEEEECCCS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEecCCC
Confidence            5689999999999999999999888754  334666666533

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.70  E-value=3e-05  Score=55.95  Aligned_cols=28  Identities=32%  Similarity=0.444  Sum_probs=24.1

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .+..+++|+|++|+|||||++.+...+.
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~   31 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALARTLG   31 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3457899999999999999999988765

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.70  E-value=2.6e-05  Score=54.18  Aligned_cols=25  Identities=12%  Similarity=0.179  Sum_probs=22.1

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .+++|.|++|+||||+++.+...+.
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l~   26 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKELK   26 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4789999999999999999987754

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.70  E-value=2.5e-05  Score=55.35  Aligned_cols=25  Identities=32%  Similarity=0.424  Sum_probs=22.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      +..+++|+|++|+||||+++.+...
T Consensus         8 ~g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            8 GGNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhc
Confidence            3468999999999999999999876

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.70  E-value=2.4e-05  Score=55.26  Aligned_cols=26  Identities=12%  Similarity=0.327  Sum_probs=23.0

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ..+++|+|++|+|||||++.+...+.
T Consensus         5 g~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            5 RKTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            46899999999999999999988754

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.70  E-value=2.9e-05  Score=55.67  Aligned_cols=26  Identities=27%  Similarity=0.461  Sum_probs=22.9

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +..+++|+|++|+|||||++.+...+
T Consensus         6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            6 KANLFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            34689999999999999999998764

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.69  E-value=6.4e-05  Score=53.17  Aligned_cols=31  Identities=29%  Similarity=0.308  Sum_probs=26.4

Q ss_pred             cCCccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           44 DVNVNIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        44 ~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      ..+..++.|.|++|+||||+++.+...+...
T Consensus        10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~   40 (186)
T 2yvu_A           10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKE   40 (186)
T ss_dssp             CSCCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence            3455789999999999999999999988754

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=97.69  E-value=0.0004  Score=56.27  Aligned_cols=101  Identities=19%  Similarity=0.290  Sum_probs=57.4

Q ss_pred             HHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCc-CHHHHHHHHHHHh---------
Q 035585           33 STLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTP-DIKKIHGEIAEKL---------  102 (183)
Q Consensus        33 ~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~l---------  102 (183)
                      +.++.+....   +.+.++|+|++|+|||||+..+....... ....+++.-+.... ...++...+...-         
T Consensus       140 r~ID~L~pi~---kGq~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~  215 (473)
T 1sky_E          140 KVVDLLAPYI---KGGKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVF  215 (473)
T ss_dssp             HHHHHHSCEE---TTCEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEE
T ss_pred             hHHHHHhhhc---cCCEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEE
Confidence            4454444332   33568999999999999999998877654 22334555555443 3444444443220         


Q ss_pred             --CCCchhHHH--HHHHHHHHHHHh--cCCeEEEEEeCCCC
Q 035585          103 --GLEFSEEAE--SRRASRLYERLK--KEKMILVILDNIWK  137 (183)
Q Consensus       103 --~~~~~~~~~--~~~~~~~~~~~~--~~~~~llvlD~~~~  137 (183)
                        ....+....  ......+.++++  +++.+||++|++..
T Consensus       216 ~~~~d~pg~r~~~~~~~ltiAEyFrd~~G~~VLl~~D~itR  256 (473)
T 1sky_E          216 GQMNEPPGARMRVALTGLTMAEYFRDEQGQDGLLFIDNIFR  256 (473)
T ss_dssp             ECTTSCHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred             EcCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence              111222111  111123445554  37899999999863

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.69  E-value=3.2e-05  Score=55.49  Aligned_cols=30  Identities=27%  Similarity=0.369  Sum_probs=26.2

Q ss_pred             cCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           44 DVNVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        44 ~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      ..+..+++|+|++|+||||+++.+...+..
T Consensus        22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~   51 (200)
T 3uie_A           22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQ   51 (200)
T ss_dssp             TSCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            355689999999999999999999988863

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=97.68  E-value=0.00013  Score=68.23  Aligned_cols=84  Identities=21%  Similarity=0.251  Sum_probs=54.2

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCC-------chhHHHHHHHHH
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLE-------FSEEAESRRASR  117 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~-------~~~~~~~~~~~~  117 (183)
                      .+.+.+.|+||+|+|||+||.++.......  -..+.|+.+........     ++.++.+       .+. ........
T Consensus      1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~--G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~-~~E~~l~~ 1496 (2050)
T 3cmu_A         1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPD-TGEQALEI 1496 (2050)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCS-SHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEEcccccCHHH-----HHHcCCCchhceeecCC-hHHHHHHH
Confidence            356799999999999999999998765543  34577877776654433     3333311       111 11223333


Q ss_pred             HHHHHhcCCeEEEEEeCCC
Q 035585          118 LYERLKKEKMILVILDNIW  136 (183)
Q Consensus       118 ~~~~~~~~~~~llvlD~~~  136 (183)
                      +....++.+.-+||||+++
T Consensus      1497 ~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A         1497 CDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp             HHHHHHHTCCSEEEESCGG
T ss_pred             HHHHHhcCCCCEEEEcChh
Confidence            4444455778899999985

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.68  E-value=0.0002  Score=55.44  Aligned_cols=28  Identities=25%  Similarity=0.332  Sum_probs=23.9

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      .+.+++|.|++|+|||||++.+...+..
T Consensus        91 ~p~iigI~GpsGSGKSTl~~~L~~ll~~  118 (321)
T 3tqc_A           91 VPYIIGIAGSVAVGKSTTSRVLKALLSR  118 (321)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            3458999999999999999999877653

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=97.68  E-value=3.7e-05  Score=64.42  Aligned_cols=125  Identities=16%  Similarity=0.159  Sum_probs=66.1

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHhhhhc--c--cceEEEEecCC------cCHHH--------------HHHHHHHHhC
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQASEEKL--F--DQVVFSEVSQT------PDIKK--------------IHGEIAEKLG  103 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~~~--~--~~~~~~~~~~~------~~~~~--------------~~~~i~~~l~  103 (183)
                      .+++|.|++|+|||||++.+........-  .  ..+.|+  ++.      ....+              ....+++.++
T Consensus       379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~--~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~  456 (608)
T 3j16_B          379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMK--PQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLR  456 (608)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEE--CSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHT
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEe--cccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcC
Confidence            56899999999999999999876643210  0  012222  111      01111              1122233332


Q ss_pred             CC------chhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCccccc---ccCcCCCC--CCCCcEEEEEecChHHHhhcCC
Q 035585          104 LE------FSEEAESRRASRLYERLKKEKMILVILDNIWKYLDLE---TVGIPFGD--DHRGCKLLLTARDCNVLLNMSL  172 (183)
Q Consensus       104 ~~------~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~~~---~l~~~~~~--~~~~~~iiitsr~~~~~~~~~~  172 (183)
                      ..      ....+..+...-.+......++-+|++||.....+..   .+...+..  ...|..||++|||.+.+..+..
T Consensus       457 l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aD  536 (608)
T 3j16_B          457 IDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLAD  536 (608)
T ss_dssp             STTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCS
T ss_pred             ChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence            11      1111222222233333334788999999987654422   11111111  1236679999999998876554


Q ss_pred             CC
Q 035585          173 CR  174 (183)
Q Consensus       173 ~~  174 (183)
                      ..
T Consensus       537 rv  538 (608)
T 3j16_B          537 KV  538 (608)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=97.67  E-value=6e-05  Score=55.10  Aligned_cols=28  Identities=21%  Similarity=0.324  Sum_probs=24.3

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ..+++|+|.|+||+||+|.++.++.++.
T Consensus        27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g   54 (217)
T 3umf_A           27 AKAKVIFVLGGPGSGKGTQCEKLVQKFH   54 (217)
T ss_dssp             TSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence            4567899999999999999999988753

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.67  E-value=2.7e-05  Score=54.55  Aligned_cols=26  Identities=15%  Similarity=0.262  Sum_probs=22.8

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ..++.|+|++|+||||+++.+...+.
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~   28 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            35799999999999999999988754

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.67  E-value=3.3e-05  Score=54.71  Aligned_cols=24  Identities=38%  Similarity=0.545  Sum_probs=21.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           49 IVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .++|+|++|+|||||++.++..+.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~   25 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999998775

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=97.66  E-value=3.7e-05  Score=64.18  Aligned_cols=27  Identities=26%  Similarity=0.339  Sum_probs=23.2

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|+|++|+|||||++.+...+.
T Consensus       368 ~G~~~~ivG~sGsGKSTLl~~l~g~~~  394 (582)
T 3b60_A          368 AGKTVALVGRSGSGKSTIASLITRFYD  394 (582)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhccC
Confidence            456899999999999999999976553

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=97.65  E-value=0.00045  Score=55.86  Aligned_cols=41  Identities=15%  Similarity=0.233  Sum_probs=31.5

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ   87 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~   87 (183)
                      +..++.|.|++|+|||||+..++...... ....++|+....
T Consensus       202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~  242 (454)
T 2r6a_A          202 RSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM  242 (454)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC
Confidence            44689999999999999999999887653 123577766554

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.65  E-value=3.7e-05  Score=55.14  Aligned_cols=27  Identities=41%  Similarity=0.460  Sum_probs=23.8

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|+|++|+||||+++.+...+.
T Consensus        24 ~~~~i~l~G~~GsGKsTl~~~La~~l~   50 (199)
T 3vaa_A           24 AMVRIFLTGYMGAGKTTLGKAFARKLN   50 (199)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            446899999999999999999998763

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.64  E-value=2.8e-05  Score=54.24  Aligned_cols=25  Identities=28%  Similarity=0.382  Sum_probs=22.2

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ..++|+|++|+||||+++.+...+.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~l~   29 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQLN   29 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC
Confidence            5799999999999999999988754

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=97.64  E-value=9.4e-05  Score=61.82  Aligned_cols=27  Identities=33%  Similarity=0.453  Sum_probs=22.9

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|+|++|+|||||++.+...+.
T Consensus       368 ~Ge~~~ivG~sGsGKSTll~~l~g~~~  394 (587)
T 3qf4_A          368 PGSLVAVLGETGSGKSTLMNLIPRLID  394 (587)
T ss_dssp             TTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence            457899999999999999999876543

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.64  E-value=3.1e-05  Score=56.03  Aligned_cols=27  Identities=19%  Similarity=0.309  Sum_probs=24.0

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +..+++|+||+|+|||||++.+...+.
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            457899999999999999999988764

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=97.64  E-value=0.0003  Score=51.69  Aligned_cols=23  Identities=39%  Similarity=0.538  Sum_probs=18.9

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      +.+++.|++|+||||++..+.-.
T Consensus        77 ~~~~i~g~TGsGKTt~~~~~~~~   99 (235)
T 3llm_A           77 SVVIIRGATGCGKTTQVPQFILD   99 (235)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEEeCCCCCcHHhHHHHHhc
Confidence            68999999999999877665543

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.63  E-value=6.1e-05  Score=66.11  Aligned_cols=51  Identities=14%  Similarity=0.191  Sum_probs=32.2

Q ss_pred             HHhcCCeEEEEEeCCCCcccccc---cCcCCCCCCCCcEEEEEecChHHHhhcCCC
Q 035585          121 RLKKEKMILVILDNIWKYLDLET---VGIPFGDDHRGCKLLLTARDCNVLLNMSLC  173 (183)
Q Consensus       121 ~~~~~~~~llvlD~~~~~~~~~~---l~~~~~~~~~~~~iiitsr~~~~~~~~~~~  173 (183)
                      .....++-+||+||..+..+...   +...+...  +..||++||+.+++..+...
T Consensus       914 rAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~Dr  967 (986)
T 2iw3_A          914 AGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEE  967 (986)
T ss_dssp             HHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCCE
T ss_pred             HHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCE
Confidence            33347899999999875543222   22222222  34699999999988766554

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.62  E-value=3.3e-05  Score=55.49  Aligned_cols=26  Identities=35%  Similarity=0.445  Sum_probs=22.4

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .+.++|+||+|+|||||++.+...+.
T Consensus         4 g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            4 PRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            46789999999999999999987654

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=97.62  E-value=4.4e-05  Score=62.56  Aligned_cols=45  Identities=16%  Similarity=0.127  Sum_probs=38.3

Q ss_pred             ccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           26 EAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        26 ~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ..++|++..++.+...+...  ..++|+|++|+|||+||+.++....
T Consensus        22 ~~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~   66 (500)
T 3nbx_X           22 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQ   66 (500)
T ss_dssp             TTCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred             hhhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHh
Confidence            56889999998888877543  5789999999999999999988764

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=97.61  E-value=0.0006  Score=54.96  Aligned_cols=41  Identities=15%  Similarity=0.024  Sum_probs=31.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ   87 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~   87 (183)
                      +..++.|.|++|+|||+|+..++...... .-..++|++...
T Consensus       199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE~  239 (444)
T 2q6t_A          199 PGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLEM  239 (444)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSS
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECCC
Confidence            34689999999999999999999877643 123577766653

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.60  E-value=5.3e-05  Score=52.98  Aligned_cols=26  Identities=31%  Similarity=0.489  Sum_probs=22.7

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      ...+++|+|++|+||||+++.+...+
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~~~   32 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAHQL   32 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence            34689999999999999999988765

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.59  E-value=4.9e-05  Score=56.32  Aligned_cols=27  Identities=22%  Similarity=0.287  Sum_probs=23.7

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ++..++|.|++|+||||+++.+...+.
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg   52 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFG   52 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            457899999999999999999997653

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.59  E-value=5.8e-05  Score=53.44  Aligned_cols=26  Identities=31%  Similarity=0.337  Sum_probs=22.8

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      .+.++.|.|++|+||||+++.+...+
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALATGL   29 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence            34689999999999999999998765

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.59  E-value=5.2e-05  Score=52.63  Aligned_cols=27  Identities=30%  Similarity=0.302  Sum_probs=24.2

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      .+..+++|.|++|+|||||++.+...+
T Consensus        31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           31 EKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            445789999999999999999999877

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.59  E-value=5e-05  Score=53.56  Aligned_cols=26  Identities=23%  Similarity=0.408  Sum_probs=22.9

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ...++|+|++|+||||+++.+...+.
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~   30 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTK   30 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            46789999999999999999988764

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=97.58  E-value=3e-05  Score=70.41  Aligned_cols=27  Identities=26%  Similarity=0.337  Sum_probs=22.9

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|+|++|+|||||++.+...+.
T Consensus      1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1130 (1321)
T 4f4c_A         1104 PGQTLALVGPSGCGKSTVVALLERFYD 1130 (1321)
T ss_dssp             TTCEEEEECSTTSSTTSHHHHHTTSSC
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCcc
Confidence            456799999999999999999976543

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.58  E-value=4.1e-05  Score=54.91  Aligned_cols=26  Identities=23%  Similarity=0.389  Sum_probs=23.0

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +.+++|+|++|+||||+++.+...+.
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~lg   43 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEACG   43 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            46899999999999999999988763

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.58  E-value=4.5e-05  Score=55.06  Aligned_cols=27  Identities=22%  Similarity=0.343  Sum_probs=23.7

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +..+++|.|++|+|||||++.+...+.
T Consensus        19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           19 VGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            457899999999999999999987763

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=97.58  E-value=0.00039  Score=54.11  Aligned_cols=56  Identities=14%  Similarity=0.153  Sum_probs=38.3

Q ss_pred             ccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585           28 FKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ   87 (183)
Q Consensus        28 ~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~   87 (183)
                      +-.--..++.+..-+  .+..++.|.|++|+|||+|+..++......  -..++|++..-
T Consensus        29 i~TG~~~LD~~~gGl--~~G~LiiIaG~pG~GKTt~al~ia~~~a~~--g~~Vl~fSlEm   84 (338)
T 4a1f_A           29 IPTGFVQLDNYTSGF--NKGSLVIIGARPSMGKTSLMMNMVLSALND--DRGVAVFSLEM   84 (338)
T ss_dssp             BCCSCHHHHHHHCSB--CTTCEEEEEECTTSCHHHHHHHHHHHHHHT--TCEEEEEESSS
T ss_pred             ccCCChHHHHHhcCC--CCCcEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCCC
Confidence            333345565554322  344689999999999999999998887653  34577766643

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=97.57  E-value=5.3e-05  Score=52.64  Aligned_cols=27  Identities=22%  Similarity=0.389  Sum_probs=23.1

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +.++++|.|++|+||||+++.+..++.
T Consensus         6 ~~~~i~l~G~~GsGKSTva~~La~~lg   32 (168)
T 1zuh_A            6 HMQHLVLIGFMGSGKSSLAQELGLALK   32 (168)
T ss_dssp             --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence            467899999999999999999988765

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=97.56  E-value=0.00017  Score=63.85  Aligned_cols=24  Identities=29%  Similarity=0.174  Sum_probs=21.1

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      ..+++|+||+|+||||+++.+ ...
T Consensus       789 g~i~~ItGpNgsGKSTlLr~i-Gl~  812 (1022)
T 2o8b_B          789 AYCVLVTGPNMGGKSTLMRQA-GLL  812 (1022)
T ss_dssp             CCEEEEECCTTSSHHHHHHHH-HHH
T ss_pred             CcEEEEECCCCCChHHHHHHH-HHH
Confidence            479999999999999999998 443

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.56  E-value=4.7e-05  Score=54.55  Aligned_cols=26  Identities=23%  Similarity=0.337  Sum_probs=23.1

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +..+++|+|++|+||||+++.+...+
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            34689999999999999999998876

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.55  E-value=6.4e-05  Score=53.12  Aligned_cols=27  Identities=26%  Similarity=0.421  Sum_probs=23.8

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      ..|+|.|++|+||||+++.+...+...
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~   28 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILDNQ   28 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            468999999999999999999987643

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.55  E-value=5.3e-05  Score=53.00  Aligned_cols=22  Identities=36%  Similarity=0.558  Sum_probs=20.3

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHh
Q 035585           48 NIVGVYGMGGIGKTTLVKEFAR   69 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~   69 (183)
                      .+++|.|++|+||||+++.+..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4789999999999999999887

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=97.55  E-value=3.9e-05  Score=67.05  Aligned_cols=24  Identities=21%  Similarity=0.257  Sum_probs=21.2

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFAR   69 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~   69 (183)
                      ...+++|+||+|+||||+++.+..
T Consensus       672 ~g~i~~ItGPNGaGKSTlLr~i~~  695 (918)
T 3thx_B          672 SERVMIITGPNMGGKSSYIKQVAL  695 (918)
T ss_dssp             SCCEEEEESCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCchHHHHHHHHH
Confidence            457899999999999999999864

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.55  E-value=0.00014  Score=55.45  Aligned_cols=30  Identities=17%  Similarity=0.066  Sum_probs=26.0

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      .++.+++|.|++|+|||||++.+...+...
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~   58 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK   58 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence            456789999999999999999999888653

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.55  E-value=0.0001  Score=56.13  Aligned_cols=27  Identities=22%  Similarity=0.206  Sum_probs=23.3

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      ..+.+++|.|++|+||||+++.+...+
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~~~   57 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFEET   57 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            345689999999999999999998765

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=97.55  E-value=0.00013  Score=61.94  Aligned_cols=41  Identities=20%  Similarity=0.173  Sum_probs=26.2

Q ss_pred             eEEEEEeCCCCcccc------cccCcCCCCCCCCcEEEEEecChHHHhh
Q 035585          127 MILVILDNIWKYLDL------ETVGIPFGDDHRGCKLLLTARDCNVLLN  169 (183)
Q Consensus       127 ~~llvlD~~~~~~~~------~~l~~~~~~~~~~~~iiitsr~~~~~~~  169 (183)
                      +-+|++||.....+.      ..+...+.  ..|..||++|||.+++..
T Consensus       223 ~~lLlLDEPtsgLD~~~~~~l~~~l~~l~--~~g~tvi~vtHd~~~~~~  269 (670)
T 3ux8_A          223 GVLYVLDEPSIGLHQRDNDRLIATLKSMR--DLGNTLIVVEHDEDTMLA  269 (670)
T ss_dssp             SCEEEEECTTTTCCGGGHHHHHHHHHHHH--HTTCEEEEECCCHHHHHH
T ss_pred             CCEEEEECCccCCCHHHHHHHHHHHHHHH--HcCCEEEEEeCCHHHHhh
Confidence            349999998755432      12222222  236789999999987664

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.54  E-value=4.4e-05  Score=54.94  Aligned_cols=27  Identities=30%  Similarity=0.455  Sum_probs=23.5

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +..+++|+|++|+||||+++.+...+.
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            346899999999999999999988764

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.54  E-value=5e-05  Score=52.65  Aligned_cols=20  Identities=30%  Similarity=0.561  Sum_probs=18.6

Q ss_pred             cEEEEEeCCCCcHHHHHHHH
Q 035585           48 NIVGVYGMGGIGKTTLVKEF   67 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~   67 (183)
                      .+++|.|++|+||||+++.+
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            47899999999999999998

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=97.54  E-value=0.00029  Score=57.03  Aligned_cols=41  Identities=22%  Similarity=0.310  Sum_probs=30.2

Q ss_pred             HHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           33 STLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        33 ~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      +.+..+...+.+.. +.++|.|++|+|||+++..+...+...
T Consensus        32 ~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~   72 (459)
T 3upu_A           32 NAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIST   72 (459)
T ss_dssp             HHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence            33444444444333 489999999999999999999888765

>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19

Probab=97.54  E-value=0.00034  Score=51.61  Aligned_cols=41  Identities=20%  Similarity=0.090  Sum_probs=29.5

Q ss_pred             ccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           28 FKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        28 ~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +.-|.-+.+.+..++..   ..++|+|++|+|||.++..+....
T Consensus        92 ~~l~~~Q~~ai~~~~~~---~~~ll~~~tG~GKT~~a~~~~~~~  132 (237)
T 2fz4_A           92 ISLRDYQEKALERWLVD---KRGCIVLPTGSGKTHVAMAAINEL  132 (237)
T ss_dssp             CCCCHHHHHHHHHHTTT---SEEEEEESSSTTHHHHHHHHHHHS
T ss_pred             CCcCHHHHHHHHHHHhC---CCEEEEeCCCCCHHHHHHHHHHHc
Confidence            34466666666666543   248899999999999998877654

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.54  E-value=6.5e-05  Score=53.04  Aligned_cols=26  Identities=27%  Similarity=0.339  Sum_probs=23.5

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      ..++|.|++|+||||+++.+...+..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~~l~~   29 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMDNLRK   29 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            57999999999999999999988764

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=97.54  E-value=0.00011  Score=63.45  Aligned_cols=26  Identities=19%  Similarity=0.139  Sum_probs=22.6

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      .+..+++|+||+|+||||+++.+...
T Consensus       605 ~~g~i~~ItGpNGsGKSTlLr~iagl  630 (800)
T 1wb9_A          605 PQRRMLIITGPNMGGKSTYMRQTALI  630 (800)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCChHHHHHHHHHH
Confidence            34579999999999999999998764

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.53  E-value=5.8e-05  Score=55.23  Aligned_cols=27  Identities=19%  Similarity=0.322  Sum_probs=23.9

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +..+++|+||+|+|||||++.+.....
T Consensus        15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           15 QGTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            457899999999999999999988765

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=97.53  E-value=0.00011  Score=53.14  Aligned_cols=41  Identities=17%  Similarity=0.198  Sum_probs=30.3

Q ss_pred             HHHHHHHHHhccC-CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           33 STLKSIQDALTDV-NVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        33 ~~l~~l~~~l~~~-~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      ..+..+..++.+. +...++++||+|+|||++|..+++.+..
T Consensus        43 ~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g   84 (212)
T 1tue_A           43 TFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQG   84 (212)
T ss_dssp             HHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4455566665532 2347999999999999999999887643

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.52  E-value=6.2e-05  Score=52.91  Aligned_cols=27  Identities=37%  Similarity=0.461  Sum_probs=23.1

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ....++|+|++|+||||+++.+...+.
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~~~~   36 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELASKSG   36 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence            346789999999999999999987753

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.52  E-value=0.00049  Score=56.14  Aligned_cols=29  Identities=31%  Similarity=0.520  Sum_probs=25.1

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      +..+++|+|++|+|||||++.+...+...
T Consensus       292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~  320 (503)
T 2yhs_A          292 APFVILMVGVNGVGKTTTIGKLARQFEQQ  320 (503)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCcccHHHHHHHHHHHhhhc
Confidence            45689999999999999999999887653

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.51  E-value=7.6e-05  Score=55.31  Aligned_cols=28  Identities=21%  Similarity=0.335  Sum_probs=24.1

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .+..+++|.|++|+|||||++.+...+.
T Consensus        23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG   50 (245)
T 2jeo_A           23 MRPFLIGVSGGTASGKSTVCEKIMELLG   50 (245)
T ss_dssp             CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3456899999999999999999988764

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=97.51  E-value=3.5e-05  Score=64.26  Aligned_cols=28  Identities=32%  Similarity=0.392  Sum_probs=23.2

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .+...++|+|++|+|||||++.+...+.
T Consensus       365 ~~G~~~~ivG~sGsGKSTll~~l~g~~~  392 (578)
T 4a82_A          365 EKGETVAFVGMSGGGKSTLINLIPRFYD  392 (578)
T ss_dssp             CTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence            3457899999999999999999876543

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.51  E-value=8.4e-05  Score=52.72  Aligned_cols=27  Identities=30%  Similarity=0.364  Sum_probs=23.5

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|.|++|+||||+++.+...+.
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~~l~   34 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQKYG   34 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            456899999999999999999988653

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.51  E-value=0.00013  Score=56.02  Aligned_cols=28  Identities=32%  Similarity=0.504  Sum_probs=24.8

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      +..+++|+|++|+||||+++.++..+..
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~  128 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN  128 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence            4579999999999999999999987764

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.50  E-value=0.00012  Score=51.36  Aligned_cols=29  Identities=34%  Similarity=0.462  Sum_probs=25.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      ..+++.|.|++|+|||||+..+...+..+
T Consensus         3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~   31 (169)
T 1xjc_A            3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE   31 (169)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence            45789999999999999999999988764

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=97.50  E-value=0.00019  Score=55.37  Aligned_cols=65  Identities=20%  Similarity=0.154  Sum_probs=33.6

Q ss_pred             cCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585           21 SNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ   87 (183)
Q Consensus        21 ~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~   87 (183)
                      +...|.+..|.-...-.+...+.-...++|+|+|.+|+||||.+..+...+...  -..+..+++..
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~i~~aKVIAIaGKGGVGKTTtavNLA~aLA~~--GkkVllID~Dp   86 (314)
T 3fwy_A           22 DLTIPTGADGEGSVQVHLDEADKITGAKVFAVYGKGGIGKSTTSSNLSAAFSIL--GKRVLQIGCDP   86 (314)
T ss_dssp             -------------------------CCEEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEESS
T ss_pred             cCCCCCCCCCCcccccccCcccCCCCceEEEEECCCccCHHHHHHHHHHHHHHC--CCeEEEEecCC
Confidence            334444444444444444433333456899999999999999999999988875  33577777764

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=97.50  E-value=0.0017  Score=53.23  Aligned_cols=29  Identities=28%  Similarity=0.384  Sum_probs=24.0

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      ++.+|+|+|.+|+||||++..++..+...
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~  128 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRK  128 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence            35689999999999999999999877653

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.50  E-value=5.6e-05  Score=55.16  Aligned_cols=26  Identities=31%  Similarity=0.533  Sum_probs=23.1

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +..+++|+|++|+|||||++.+...+
T Consensus        22 ~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           22 NIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            44689999999999999999998865

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=97.50  E-value=2.6e-05  Score=65.28  Aligned_cols=28  Identities=32%  Similarity=0.310  Sum_probs=23.5

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .+...++|+|++|+|||||++.+...+.
T Consensus       379 ~~G~~~~ivG~sGsGKSTll~~l~g~~~  406 (598)
T 3qf4_B          379 KPGQKVALVGPTGSGKTTIVNLLMRFYD  406 (598)
T ss_dssp             CTTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence            3457899999999999999999976543

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.49  E-value=7.8e-05  Score=52.76  Aligned_cols=26  Identities=27%  Similarity=0.232  Sum_probs=22.6

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +..|+|.|++|+||||+++.+...+.
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~~~   28 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEKYG   28 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            46799999999999999999887653

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=97.49  E-value=8.8e-05  Score=62.24  Aligned_cols=48  Identities=17%  Similarity=0.060  Sum_probs=32.4

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHhhhh-cccceEEEEecCCcCHHHH
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQASEEK-LFDQVVFSEVSQTPDIKKI   94 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   94 (183)
                      .+.++|+|++|+||||++..+...+.... .....+.+.+++......+
T Consensus       164 ~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L  212 (608)
T 1w36_D          164 RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARL  212 (608)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHH
Confidence            47899999999999999999887776421 1123455556665444333

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.49  E-value=6.9e-05  Score=53.11  Aligned_cols=22  Identities=32%  Similarity=0.508  Sum_probs=20.1

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHh
Q 035585           48 NIVGVYGMGGIGKTTLVKEFAR   69 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~   69 (183)
                      .+++|+|++|+||||+++.+..
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhc
Confidence            4789999999999999999975

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.49  E-value=0.00034  Score=49.39  Aligned_cols=25  Identities=28%  Similarity=0.462  Sum_probs=22.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           49 IVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      +++|.|++|+||||+++.+...+..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~~   26 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLKQ   26 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            5889999999999999999998754

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.48  E-value=7.1e-05  Score=53.86  Aligned_cols=28  Identities=14%  Similarity=0.341  Sum_probs=24.1

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .+.++++|+||+|+|||||++.+.....
T Consensus        17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           17 QGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            3557899999999999999999987654

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=97.48  E-value=0.0011  Score=48.64  Aligned_cols=57  Identities=18%  Similarity=0.105  Sum_probs=36.9

Q ss_pred             hccCCccEEEEEeCCCCcHHHHHHHHHhHHhh-hhcccceEE-EEecCCcCHHHHHHHHHH
Q 035585           42 LTDVNVNIVGVYGMGGIGKTTLVKEFARQASE-EKLFDQVVF-SEVSQTPDIKKIHGEIAE  100 (183)
Q Consensus        42 l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~i~~  100 (183)
                      ....+...|.+.|..|+||||+++.+...+.. .. + .+.. ..-+.+...-+..+.++.
T Consensus        16 ~~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g-~-~v~~~treP~~t~~g~~ir~~l~   74 (223)
T 3ld9_A           16 TQGPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYG-V-NNVVLTREPGGTLLNESVRNLLF   74 (223)
T ss_dssp             ---CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHC-G-GGEEEEESSCSSHHHHHHHHHHH
T ss_pred             ccCCCCeEEEEECCCCCCHHHHHHHHHHHHhhccC-c-eeeEeeeCCCCChHHHHHHHHHh
Confidence            33455678999999999999999999999876 42 2 2333 444444444444445544

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.48  E-value=7.7e-05  Score=55.71  Aligned_cols=25  Identities=24%  Similarity=0.348  Sum_probs=22.1

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .+++|+|++|+|||||++.++..+.
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~   26 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETG   26 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCC
Confidence            4789999999999999999987654

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.48  E-value=8.4e-05  Score=52.37  Aligned_cols=26  Identities=27%  Similarity=0.271  Sum_probs=22.5

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ...++|.|++|+||||+++.+...+.
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~~l~   29 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQELG   29 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35789999999999999999987653

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=97.48  E-value=0.00044  Score=63.84  Aligned_cols=87  Identities=21%  Similarity=0.260  Sum_probs=54.5

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchh------HHHHHHHHHHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSE------EAESRRASRLY  119 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~~~  119 (183)
                      +..++.|+|++|+|||||+.+++......  -..++|++........  .   ++.++.....      .........+.
T Consensus       731 ~G~lVlI~G~PG~GKTtLal~lA~~aa~~--g~~VlyiS~Ees~~ql--~---A~~lGvd~~~L~i~~~~~leei~~~l~  803 (1706)
T 3cmw_A          731 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI--Y---ARKLGVDIDNLLCSQPDTGEQALEICD  803 (1706)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHH--H---HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred             CCceEEEECCCCCCcHHHHHHHHHHHHHc--CCCeEEEeccchHHHH--H---HHHcCCChhheEEecCCcHHHHHHHHH
Confidence            44689999999999999999999887653  3357887776654432  1   4444432111      11222223333


Q ss_pred             HHHhcCCeEEEEEeCCCCcc
Q 035585          120 ERLKKEKMILVILDNIWKYL  139 (183)
Q Consensus       120 ~~~~~~~~~llvlD~~~~~~  139 (183)
                      ....+.+.-+||+|.++.+.
T Consensus       804 ~lv~~~~~~lVVIDsLq~l~  823 (1706)
T 3cmw_A          804 ALARSGAVDVIVVDSVAALT  823 (1706)
T ss_dssp             HHHHHTCCSEEEESCSTTCC
T ss_pred             HHHHccCCCEEEEechhhhc
Confidence            33334677899999987553

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.48  E-value=0.00021  Score=52.99  Aligned_cols=27  Identities=19%  Similarity=0.091  Sum_probs=23.5

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      .++..|+|.|++|+||||+++.+...+
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            355689999999999999999998765

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.47  E-value=9e-05  Score=57.13  Aligned_cols=29  Identities=24%  Similarity=0.287  Sum_probs=25.4

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      .+..+++|.|++|+|||||++.+...+..
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~  116 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQALLAR  116 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence            45578999999999999999999988765

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.47  E-value=8.3e-05  Score=54.12  Aligned_cols=24  Identities=33%  Similarity=0.505  Sum_probs=21.8

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      ..++|+|++|+||||+++.+...+
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~~   29 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEAL   29 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            579999999999999999998765

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.47  E-value=0.00014  Score=55.82  Aligned_cols=28  Identities=25%  Similarity=0.418  Sum_probs=24.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      +..+++|+|++|+||||+++.++..+..
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~  126 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN  126 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            3468999999999999999999887754

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=97.47  E-value=0.00018  Score=52.18  Aligned_cols=41  Identities=20%  Similarity=0.243  Sum_probs=30.7

Q ss_pred             HHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           33 STLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        33 ~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      +..+.+...+...+...++|+|.+|+|||||+..+......
T Consensus        24 ~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~   64 (226)
T 2hf9_A           24 RLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKD   64 (226)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence            34444555444456788999999999999999999887644

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.47  E-value=0.00085  Score=53.82  Aligned_cols=40  Identities=20%  Similarity=0.199  Sum_probs=30.7

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ   87 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~   87 (183)
                      ++.+++++|++|+||||++..++..+...  -..+..+.+..
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~--g~~Vllvd~D~  136 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAADT  136 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEECCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEeeccc
Confidence            35689999999999999999999888754  33455655543

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.46  E-value=0.00018  Score=54.02  Aligned_cols=112  Identities=16%  Similarity=0.145  Sum_probs=57.7

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccc-eEEEEecCCcCHHHHHHHHH--HHhCCCchhHHHHHHHHHHHHH
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQ-VVFSEVSQTPDIKKIHGEIA--EKLGLEFSEEAESRRASRLYER  121 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~--~~l~~~~~~~~~~~~~~~~~~~  121 (183)
                      .+..+++|+|++|+|||||++.+...+...  ..+ +.+...+-..-.... ..+.  ..++...     ......+...
T Consensus        23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl~~-----~~l~~~la~a   94 (261)
T 2eyu_A           23 RKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHK-KSIVNQREVGEDT-----KSFADALRAA   94 (261)
T ss_dssp             CSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCS-SSEEEEEEBTTTB-----SCHHHHHHHH
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcceeecCCc-ceeeeHHHhCCCH-----HHHHHHHHHH
Confidence            455799999999999999999998877543  122 222221100000000 0000  0011110     0112233344


Q ss_pred             HhcCCeEEEEEeCCCCcccccccCcCCCCCCCCcEEEEEecChHHHh
Q 035585          122 LKKEKMILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVLL  168 (183)
Q Consensus       122 ~~~~~~~llvlD~~~~~~~~~~l~~~~~~~~~~~~iiitsr~~~~~~  168 (183)
                      +. .++-+|++||+.+......+...   ...|..+++|+|+.+...
T Consensus        95 L~-~~p~illlDEp~D~~~~~~~l~~---~~~g~~vl~t~H~~~~~~  137 (261)
T 2eyu_A           95 LR-EDPDVIFVGEMRDLETVETALRA---AETGHLVFGTLHTNTAID  137 (261)
T ss_dssp             HH-HCCSEEEESCCCSHHHHHHHHHH---HHTTCEEEEEECCSSHHH
T ss_pred             Hh-hCCCEEEeCCCCCHHHHHHHHHH---HccCCEEEEEeCcchHHH
Confidence            44 46778999999744333222222   123667899999876543

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=97.46  E-value=0.00016  Score=57.22  Aligned_cols=94  Identities=14%  Similarity=0.127  Sum_probs=49.9

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCc-CHHHHHHHHHHHh----CCCchhHH--HHHHHHH
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTP-DIKKIHGEIAEKL----GLEFSEEA--ESRRASR  117 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~l----~~~~~~~~--~~~~~~~  117 (183)
                      .+.+.++|+|++|+|||||++.+......+..-..++|+-+.... ...++.+.+-..+    ....+...  .......
T Consensus       172 ~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~~~~~~~~vV~atadep~~~r~~~a~~alt  251 (422)
T 3ice_A          172 GRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIE  251 (422)
T ss_dssp             BTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHTTCSSEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             cCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHHHHHhCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence            455789999999999999999988876554212234555444332 2222222220000    00111110  1111122


Q ss_pred             HHHHHh-cCCeEEEEEeCCCCc
Q 035585          118 LYERLK-KEKMILVILDNIWKY  138 (183)
Q Consensus       118 ~~~~~~-~~~~~llvlD~~~~~  138 (183)
                      .-++++ +++.++|++|++...
T Consensus       252 ~AEyfrd~G~dVLil~DslTR~  273 (422)
T 3ice_A          252 KAKRLVEHKKDVIILLDSITRL  273 (422)
T ss_dssp             HHHHHHHTSCEEEEEEECHHHH
T ss_pred             HHHHHHhcCCCEEEEEeCchHH
Confidence            233443 478999999997643

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=97.46  E-value=7.5e-05  Score=62.60  Aligned_cols=54  Identities=19%  Similarity=0.147  Sum_probs=44.0

Q ss_pred             hhhcCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           18 WLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        18 ~~~~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      ...++.....++|.+..++.+...+...  ..++|+|++|+|||||++.++..+..
T Consensus        33 ~~~rp~~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~~   86 (604)
T 3k1j_A           33 IEVPEKLIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLPT   86 (604)
T ss_dssp             SCCCSSHHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred             ccccccccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCCc
Confidence            3445566677899999998888877544  68999999999999999999987754

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.45  E-value=8e-05  Score=55.06  Aligned_cols=26  Identities=23%  Similarity=0.379  Sum_probs=22.4

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +..+++|+|++|+|||||++.+...+
T Consensus        30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           30 EGEFVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            45789999999999999999997544

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=97.45  E-value=0.00014  Score=66.12  Aligned_cols=28  Identities=25%  Similarity=0.348  Sum_probs=23.8

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .+...++|+|++|+|||||++.+...+.
T Consensus       442 ~~G~~vaivG~sGsGKSTll~ll~~~~~  469 (1321)
T 4f4c_A          442 NAGQTVALVGSSGCGKSTIISLLLRYYD  469 (1321)
T ss_dssp             CTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred             cCCcEEEEEecCCCcHHHHHHHhccccc
Confidence            3457899999999999999999987654

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.44  E-value=0.0001  Score=52.40  Aligned_cols=26  Identities=23%  Similarity=0.330  Sum_probs=23.0

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +.+|+|.|++|+||||+++.+...+.
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~l~   37 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEKYG   37 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            36899999999999999999988764

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.43  E-value=0.00037  Score=53.49  Aligned_cols=28  Identities=21%  Similarity=0.239  Sum_probs=24.7

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .+..+++|.|++|+|||||++.+...+.
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4557999999999999999999988765

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.43  E-value=7.1e-05  Score=53.37  Aligned_cols=26  Identities=27%  Similarity=0.450  Sum_probs=22.2

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      +.|+|+||+|+|||||++.+..+...
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~~~~~   27 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFAEYPD   27 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhCCC
Confidence            45889999999999999999877543

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.43  E-value=7.7e-05  Score=52.46  Aligned_cols=27  Identities=30%  Similarity=0.409  Sum_probs=24.5

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      ..++|+|++|+|||||++.+...+...
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~   29 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRER   29 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence            578999999999999999999988764

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.43  E-value=0.00011  Score=52.74  Aligned_cols=28  Identities=14%  Similarity=0.208  Sum_probs=24.4

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      ...|+|.|++|+||||+++.+...+...
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~   31 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKDWIELK   31 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence            3579999999999999999999887653

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.43  E-value=9.5e-05  Score=51.75  Aligned_cols=25  Identities=28%  Similarity=0.462  Sum_probs=22.0

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ..++|.|++|+||||+++.+...+.
T Consensus         5 ~~i~i~G~~GsGKsTla~~La~~l~   29 (175)
T 1via_A            5 KNIVFIGFMGSGKSTLARALAKDLD   29 (175)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            3689999999999999999988764

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.42  E-value=8.5e-05  Score=52.34  Aligned_cols=25  Identities=24%  Similarity=0.396  Sum_probs=22.1

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ..|+|+|++|+||||+++.+...+.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg   27 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKALG   27 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcC
Confidence            4689999999999999999988764

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.42  E-value=9.5e-05  Score=54.86  Aligned_cols=27  Identities=19%  Similarity=0.250  Sum_probs=23.3

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .+ .+++|.|++|+|||||++.+.....
T Consensus        23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~   49 (240)
T 2onk_A           23 GR-DYCVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             CS-SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CC-EEEEEECCCCCCHHHHHHHHhCCCC
Confidence            35 8899999999999999999986553

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.41  E-value=0.00012  Score=51.83  Aligned_cols=25  Identities=24%  Similarity=0.303  Sum_probs=22.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      +...++|+|++|+||||+++.+...
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4568999999999999999999886

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.41  E-value=0.00011  Score=52.57  Aligned_cols=26  Identities=27%  Similarity=0.414  Sum_probs=22.8

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      ++..|+|.|++|+||||+++.+...+
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            45689999999999999999998764

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.40  E-value=0.00012  Score=53.19  Aligned_cols=27  Identities=19%  Similarity=0.171  Sum_probs=23.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|.|++|+||||+++.+...+.
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l~   29 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERFH   29 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            346799999999999999999988754

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.40  E-value=0.00013  Score=52.36  Aligned_cols=28  Identities=18%  Similarity=0.187  Sum_probs=24.7

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      ...|+|.|++|+||||+++.+...+...
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~   37 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN   37 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence            4689999999999999999999887654

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.40  E-value=0.00013  Score=51.57  Aligned_cols=26  Identities=35%  Similarity=0.359  Sum_probs=22.7

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +.+++|.|++|+||||+++.+...+.
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~l~   31 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRDFG   31 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            36899999999999999999988653

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.40  E-value=0.00019  Score=51.85  Aligned_cols=42  Identities=21%  Similarity=0.281  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           32 LSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        32 ~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      .+..+.+...+...+.+.++|+|.+|+|||||+..+......
T Consensus        15 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~   56 (221)
T 2wsm_A           15 KRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIGN   56 (221)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence            344444455444456789999999999999999999887643

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.40  E-value=0.0001  Score=52.71  Aligned_cols=25  Identities=32%  Similarity=0.385  Sum_probs=22.5

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ..++|+|++|+|||||++.++..+.
T Consensus         2 ~~i~i~G~nG~GKTTll~~l~g~~~   26 (189)
T 2i3b_A            2 RHVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHHhhcc
Confidence            3689999999999999999998875

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=97.40  E-value=0.00025  Score=53.88  Aligned_cols=40  Identities=23%  Similarity=0.282  Sum_probs=30.5

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhccc-ceEEEEec
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFD-QVVFSEVS   86 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~-~~~~~~~~   86 (183)
                      .+..+++|.|++|+|||||++.++......  .. .++|+...
T Consensus        33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e   73 (296)
T 1cr0_A           33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLE   73 (296)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESS
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCc
Confidence            344799999999999999999999887654  22 46665543

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.39  E-value=0.00012  Score=52.22  Aligned_cols=24  Identities=25%  Similarity=0.591  Sum_probs=21.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           49 IVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .++|.|++|+||||+++.+...+.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~   25 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLG   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcC
Confidence            588999999999999999988765

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.39  E-value=0.0012  Score=53.19  Aligned_cols=41  Identities=24%  Similarity=0.289  Sum_probs=31.2

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ   87 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~   87 (183)
                      +++++.++|.+|+||||++..++..+..+ .-..+..+++..
T Consensus        99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~-~G~kVllvd~D~  139 (433)
T 2xxa_A           99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK-HKKKVLVVSADV  139 (433)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHHHHT-SCCCEEEEECCC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHh-cCCeEEEEecCC
Confidence            45789999999999999999999888764 122356666654

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.39  E-value=0.00015  Score=52.13  Aligned_cols=28  Identities=14%  Similarity=0.251  Sum_probs=24.8

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      ..+|+|.|++|+||||+++.+...+...
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~   36 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVEALCAA   36 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            4689999999999999999999988654

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.38  E-value=0.00011  Score=52.93  Aligned_cols=26  Identities=35%  Similarity=0.588  Sum_probs=22.8

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      ...+++|+|++|+||||+++.+...+
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            34689999999999999999998764

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=97.38  E-value=0.00016  Score=58.29  Aligned_cols=47  Identities=21%  Similarity=0.346  Sum_probs=35.4

Q ss_pred             cccchHHHHHHHHHHhcc--------------CCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           27 AFKSRLSTLKSIQDALTD--------------VNVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        27 ~~~gR~~~l~~l~~~l~~--------------~~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      .++|.+.....+..++.+              ..++.++++|++|+|||++++.++..+..
T Consensus        16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~   76 (444)
T 1g41_A           16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA   76 (444)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            457777777776655521              24567999999999999999999987643

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=97.38  E-value=0.0029  Score=45.30  Aligned_cols=51  Identities=16%  Similarity=0.229  Sum_probs=36.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHH
Q 035585           49 IVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEK  101 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  101 (183)
                      .|++=|..|+||||.++.+.+.+...  ...+.+..-+......+..+.++..
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~~L~~~--g~~v~~treP~~t~~~~~ir~~l~~   52 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQYLEKR--GKKVILKREPGGTETGEKIRKILLE   52 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCCCCcHHHHHHHHhhc
Confidence            46778999999999999999999876  2345566666655555555555443

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.38  E-value=0.00015  Score=51.90  Aligned_cols=27  Identities=26%  Similarity=0.226  Sum_probs=23.1

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .+..|+|.|++|+||||+++.+...+.
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~~l~   45 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAEKLG   45 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            345799999999999999999988764

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=97.38  E-value=0.0013  Score=53.80  Aligned_cols=42  Identities=17%  Similarity=0.166  Sum_probs=31.6

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT   88 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~   88 (183)
                      +..++.|.|++|+|||+|+.+++...... .-..++|+.....
T Consensus       241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~s  282 (503)
T 1q57_A          241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEES  282 (503)
T ss_dssp             TTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSSC
T ss_pred             CCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccCC
Confidence            34689999999999999999999877653 1235777766543

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=97.38  E-value=0.0014  Score=52.92  Aligned_cols=40  Identities=23%  Similarity=0.238  Sum_probs=31.6

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ   87 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~   87 (183)
                      +..++.|.|++|+|||+|+.+++.....+  -..++|+...-
T Consensus       196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEm  235 (444)
T 3bgw_A          196 RRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM  235 (444)
T ss_dssp             SSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSS
T ss_pred             CCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCC
Confidence            44689999999999999999999887654  34577766554

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.37  E-value=0.00013  Score=54.41  Aligned_cols=26  Identities=35%  Similarity=0.446  Sum_probs=22.8

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      ...+++|.|++|+||||+++.+..++
T Consensus        26 ~g~~I~I~G~~GsGKSTl~k~La~~L   51 (252)
T 4e22_A           26 IAPVITVDGPSGAGKGTLCKALAESL   51 (252)
T ss_dssp             TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence            45689999999999999999998654

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.36  E-value=9.8e-05  Score=55.47  Aligned_cols=26  Identities=19%  Similarity=0.401  Sum_probs=22.6

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +..+++|+|++|+|||||++.+...+
T Consensus        31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           31 AGDVISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45689999999999999999997654

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=97.36  E-value=0.00022  Score=56.03  Aligned_cols=28  Identities=25%  Similarity=0.418  Sum_probs=24.4

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      +..+++|+|++|+||||+++.++..+..
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~  183 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN  183 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence            3468999999999999999999887754

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.36  E-value=0.00015  Score=54.32  Aligned_cols=27  Identities=30%  Similarity=0.569  Sum_probs=23.9

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      +.+|+|+|++|+||||+++.+...+..
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~~L~~   30 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAKILSK   30 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            468999999999999999999988654

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.36  E-value=0.00012  Score=50.93  Aligned_cols=25  Identities=32%  Similarity=0.404  Sum_probs=22.2

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ..++|.|++|+||||+++.+...+.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg   27 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALG   27 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhC
Confidence            4689999999999999999988764

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.36  E-value=0.00017  Score=53.72  Aligned_cols=28  Identities=21%  Similarity=0.196  Sum_probs=23.9

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ..+..++|+|++|+||||+++.+...+.
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~   57 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ   57 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            3456899999999999999999988754

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.36  E-value=7.3e-05  Score=54.80  Aligned_cols=26  Identities=27%  Similarity=0.298  Sum_probs=16.9

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHH-hHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFA-RQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~-~~~   71 (183)
                      +..+++|+|++|+|||||++.+. ..+
T Consensus        26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           26 VGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CCCEEEEECSCC----CHHHHHHC---
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            34689999999999999999998 654

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=97.36  E-value=0.00053  Score=57.86  Aligned_cols=62  Identities=24%  Similarity=0.253  Sum_probs=41.7

Q ss_pred             HHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHH
Q 035585           33 STLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIA   99 (183)
Q Consensus        33 ~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   99 (183)
                      .+.+.+...+.+  ..+.+|+||||+|||+.+..+...+-..   ...+.++..++.+...+...+.
T Consensus       193 ~Q~~AV~~al~~--~~~~lI~GPPGTGKT~ti~~~I~~l~~~---~~~ILv~a~TN~AvD~i~erL~  254 (646)
T 4b3f_X          193 SQKEAVLFALSQ--KELAIIHGPPGTGKTTTVVEIILQAVKQ---GLKVLCCAPSNIAVDNLVERLA  254 (646)
T ss_dssp             HHHHHHHHHHHC--SSEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC--CCceEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEcCchHHHHHHHHHHH
Confidence            444556666643  3588999999999997766666555433   2346677777777777766664

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.36  E-value=7.2e-05  Score=52.54  Aligned_cols=26  Identities=23%  Similarity=0.324  Sum_probs=18.7

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +.+++|.|++|+||||+++.+...+.
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~~l~   30 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHERLP   30 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHHHST
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            46899999999999999999987654

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.36  E-value=0.00014  Score=52.97  Aligned_cols=27  Identities=19%  Similarity=0.092  Sum_probs=23.5

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .+..|+|.|++|+||||+++.+...+.
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l~   30 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKYQ   30 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            346789999999999999999988764

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.36  E-value=0.00027  Score=55.27  Aligned_cols=42  Identities=24%  Similarity=0.287  Sum_probs=30.1

Q ss_pred             HHHHHHHHHh----ccCCccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           33 STLKSIQDAL----TDVNVNIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        33 ~~l~~l~~~l----~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      ...+.+.+.+    .......++|+|++|+||||+++.++..+...
T Consensus         6 ~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~   51 (359)
T 2ga8_A            6 KLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEK   51 (359)
T ss_dssp             HHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence            3444444443    24445679999999999999999998877543

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.34  E-value=0.00013  Score=53.31  Aligned_cols=26  Identities=19%  Similarity=0.236  Sum_probs=22.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      ++..++|.|++|+||||+++.+...+
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            34689999999999999999998765

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.34  E-value=0.00015  Score=51.63  Aligned_cols=26  Identities=27%  Similarity=0.328  Sum_probs=22.8

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      .++.+|+|+|++|+||||+++.+...
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHC
Confidence            34578999999999999999998875

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.34  E-value=0.00014  Score=52.12  Aligned_cols=22  Identities=32%  Similarity=0.537  Sum_probs=20.1

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHh
Q 035585           48 NIVGVYGMGGIGKTTLVKEFAR   69 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~   69 (183)
                      ..++|+|++|+||||+++.+..
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3689999999999999999987

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.33  E-value=0.00014  Score=54.82  Aligned_cols=25  Identities=28%  Similarity=0.425  Sum_probs=22.5

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      +..+++|+|++|+|||||++.++..
T Consensus        45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           45 PGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4468999999999999999999885

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.33  E-value=0.00015  Score=52.39  Aligned_cols=24  Identities=21%  Similarity=0.347  Sum_probs=20.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           49 IVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .|+|.|++|+||||+++.+...+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~   25 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKYE   25 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999987653

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.33  E-value=0.00011  Score=55.04  Aligned_cols=26  Identities=23%  Similarity=0.345  Sum_probs=22.4

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +..+++|+|++|+|||||++.+....
T Consensus        32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           32 KGDVTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44689999999999999999997544

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.33  E-value=0.00014  Score=54.26  Aligned_cols=25  Identities=32%  Similarity=0.418  Sum_probs=22.4

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      +..+++|+|++|+|||||++.+...
T Consensus        28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           28 KGEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4468999999999999999999885

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.32  E-value=0.00011  Score=54.39  Aligned_cols=26  Identities=35%  Similarity=0.431  Sum_probs=22.5

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +..+++|+|++|+|||||++.++..+
T Consensus        31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           31 RGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44689999999999999999997644

>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*

Probab=97.32  E-value=0.0015  Score=50.83  Aligned_cols=33  Identities=33%  Similarity=0.372  Sum_probs=26.5

Q ss_pred             hccCCccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           42 LTDVNVNIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        42 l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      +.+....++.+.|.+|+||||++..++..+...
T Consensus        11 l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~   43 (334)
T 3iqw_A           11 LDQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKV   43 (334)
T ss_dssp             HHCTTCCEEEEECSTTSSHHHHHHHHHHHHTTS
T ss_pred             hcCCCeEEEEEeCCCCccHHHHHHHHHHHHHhC
Confidence            334556788899999999999999998777643

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.31  E-value=0.00049  Score=55.10  Aligned_cols=37  Identities=19%  Similarity=0.202  Sum_probs=28.6

Q ss_pred             HHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           36 KSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        36 ~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      ..+.+.+ ..+..+++|+|++|+||||+++.+...+..
T Consensus       157 ~~L~~l~-~~~ggii~I~GpnGSGKTTlL~allg~l~~  193 (418)
T 1p9r_A          157 DNFRRLI-KRPHGIILVTGPTGSGKSTTLYAGLQELNS  193 (418)
T ss_dssp             HHHHHHH-TSSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred             HHHHHHH-HhcCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence            3444443 345679999999999999999999887754

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.31  E-value=0.0001  Score=53.79  Aligned_cols=27  Identities=41%  Similarity=0.545  Sum_probs=23.0

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +..+++|+|++|+|||||++.++....
T Consensus        34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~~   60 (214)
T 1sgw_A           34 KGNVVNFHGPNGIGKTTLLKTISTYLK   60 (214)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            346899999999999999999986553

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.31  E-value=0.00014  Score=52.23  Aligned_cols=22  Identities=45%  Similarity=0.590  Sum_probs=20.0

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHh
Q 035585           48 NIVGVYGMGGIGKTTLVKEFAR   69 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~   69 (183)
                      .+++|+|++|+||||+++.+..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999976

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.30  E-value=0.00019  Score=50.30  Aligned_cols=28  Identities=25%  Similarity=0.230  Sum_probs=24.2

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      +..+++|+|++|+||||+++.+...+..
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~   31 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEEYLVC   31 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            3468899999999999999999987754

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.30  E-value=0.00027  Score=51.05  Aligned_cols=28  Identities=25%  Similarity=0.267  Sum_probs=25.0

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ....+++|.|++|+||||+++.+...+.
T Consensus        23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~   50 (211)
T 1m7g_A           23 QRGLTIWLTGLSASGKSTLAVELEHQLV   50 (211)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4557899999999999999999998876

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.29  E-value=0.00034  Score=49.29  Aligned_cols=28  Identities=25%  Similarity=0.424  Sum_probs=24.7

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      .+.++|.|++|+|||||++.+...+...
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~   33 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALCAR   33 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence            5789999999999999999999887653

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.29  E-value=0.00011  Score=53.41  Aligned_cols=26  Identities=38%  Similarity=0.231  Sum_probs=23.0

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      ..+++|.|++|+|||||++.+... ..
T Consensus        22 Ge~~~liG~nGsGKSTLl~~l~Gl-~p   47 (208)
T 3b85_A           22 NTIVFGLGPAGSGKTYLAMAKAVQ-AL   47 (208)
T ss_dssp             CSEEEEECCTTSSTTHHHHHHHHH-HH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC-CC
Confidence            468999999999999999999887 53

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=97.29  E-value=0.00018  Score=52.27  Aligned_cols=27  Identities=19%  Similarity=0.188  Sum_probs=23.0

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|.|++|+||||+++.+...+.
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l~   30 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEYG   30 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            345789999999999999999988763

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=97.29  E-value=0.00084  Score=62.88  Aligned_cols=86  Identities=21%  Similarity=0.263  Sum_probs=54.6

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCch------hHHHHHHHHHHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFS------EEAESRRASRLY  119 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~~~  119 (183)
                      +..++.|+|++|+|||||+.+++......  -..++|++.........     ++.++....      ..........+.
T Consensus       382 ~G~lilI~G~pGsGKTtLaLqia~~~a~~--G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~  454 (2050)
T 3cmu_A          382 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD  454 (2050)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence            45799999999999999999999877653  34688888776655431     444543211      111222222222


Q ss_pred             HHHhcCCeEEEEEeCCCCc
Q 035585          120 ERLKKEKMILVILDNIWKY  138 (183)
Q Consensus       120 ~~~~~~~~~llvlD~~~~~  138 (183)
                      ........-+||+|.++.+
T Consensus       455 ~lv~~~~~~lIVIDSL~al  473 (2050)
T 3cmu_A          455 ALARSGAVDVIVVDSVAAL  473 (2050)
T ss_dssp             HHHHHTCCSEEEESCGGGC
T ss_pred             HHHHhcCCcEEEECCHHHh
Confidence            2233467789999998644

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.28  E-value=0.00019  Score=49.65  Aligned_cols=24  Identities=21%  Similarity=0.224  Sum_probs=21.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           49 IVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .|+|.|++|+||||+++.+...+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~   25 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLN   25 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            578999999999999999988764

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.28  E-value=0.00013  Score=54.27  Aligned_cols=26  Identities=35%  Similarity=0.541  Sum_probs=22.5

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +..+++|+|++|+|||||++.+...+
T Consensus        34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           34 QGEVIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            44689999999999999999997654

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=97.28  E-value=0.00019  Score=53.42  Aligned_cols=30  Identities=17%  Similarity=0.277  Sum_probs=24.3

Q ss_pred             cCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           44 DVNVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        44 ~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      ..++.+|+|.|++|+||||+++.+...+..
T Consensus        19 ~~~~~iI~I~G~~GSGKST~a~~L~~~lg~   48 (252)
T 1uj2_A           19 GGEPFLIGVSGGTASGKSSVCAKIVQLLGQ   48 (252)
T ss_dssp             --CCEEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            345568999999999999999999887653

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.28  E-value=0.00014  Score=54.50  Aligned_cols=26  Identities=27%  Similarity=0.316  Sum_probs=22.6

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +..+++|+|++|+|||||++.+...+
T Consensus        45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           45 SGTTCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccC
Confidence            45689999999999999999997654

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.27  E-value=0.00016  Score=52.24  Aligned_cols=23  Identities=22%  Similarity=0.286  Sum_probs=20.2

Q ss_pred             EEEEEeCCCCcHHHHHHHHHhHH
Q 035585           49 IVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      .|+|.|++|+||||+++.+...+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            37899999999999999998764

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=97.27  E-value=0.0016  Score=56.09  Aligned_cols=90  Identities=19%  Similarity=0.227  Sum_probs=46.4

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchh-------------------
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSE-------------------  108 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-------------------  108 (183)
                      ..++|+|++|+||||++..+.............+.+-.+.......+...+...++.....                   
T Consensus       110 ~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I~  189 (773)
T 2xau_A          110 QIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILK  189 (773)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTTCSEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceeccccccCCCCCEE
Confidence            5899999999999997777644332211112223333333323333444454444321100                   


Q ss_pred             -HHHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 035585          109 -EAESRRASRLYERLKKEKMILVILDNIWK  137 (183)
Q Consensus       109 -~~~~~~~~~~~~~~~~~~~~llvlD~~~~  137 (183)
                       .........+.......+.-+|||||++.
T Consensus       190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~  219 (773)
T 2xau_A          190 YMTDGMLLREAMEDHDLSRYSCIILDEAHE  219 (773)
T ss_dssp             EEEHHHHHHHHHHSTTCTTEEEEEECSGGG
T ss_pred             EECHHHHHHHHhhCccccCCCEEEecCccc
Confidence             01222222232222236788999999985

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.27  E-value=0.00014  Score=54.23  Aligned_cols=26  Identities=31%  Similarity=0.450  Sum_probs=22.5

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +..+++|+|++|+|||||++.+...+
T Consensus        25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           25 AGEILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            44689999999999999999987654

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.26  E-value=0.00017  Score=51.45  Aligned_cols=25  Identities=20%  Similarity=0.213  Sum_probs=22.5

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      ...|+|.|++|+||||+++.+...+
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            4579999999999999999998876

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.26  E-value=0.00022  Score=54.79  Aligned_cols=27  Identities=19%  Similarity=0.222  Sum_probs=23.9

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      .+...++|+|++|+|||||++.+...+
T Consensus       124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          124 PKKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            455799999999999999999998776

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=97.26  E-value=0.00029  Score=63.85  Aligned_cols=26  Identities=27%  Similarity=0.403  Sum_probs=22.7

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +...++|+|++|+|||||++.+...+
T Consensus      1058 ~Ge~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A         1058 KGQTLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp             SSSEEEEECSSSTTHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            45689999999999999999998654

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.25  E-value=0.00015  Score=55.02  Aligned_cols=26  Identities=31%  Similarity=0.434  Sum_probs=22.5

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +..+++|+|++|+|||||++.++..+
T Consensus        46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           46 KGDKWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            44689999999999999999997654

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=97.25  E-value=0.00019  Score=65.06  Aligned_cols=28  Identities=29%  Similarity=0.338  Sum_probs=23.4

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .+...++|+|++|+|||||++.+...+.
T Consensus       414 ~~G~~~~ivG~sGsGKSTl~~ll~g~~~  441 (1284)
T 3g5u_A          414 KSGQTVALVGNSGCGKSTTVQLMQRLYD  441 (1284)
T ss_dssp             CTTCEEEEECCSSSSHHHHHHHTTTSSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3457899999999999999999876553

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=97.23  E-value=0.00022  Score=53.75  Aligned_cols=24  Identities=33%  Similarity=0.526  Sum_probs=21.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           49 IVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .++|+|++|+|||||++.++....
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~   27 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQV   27 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            578999999999999999987653

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.23  E-value=0.00012  Score=52.71  Aligned_cols=25  Identities=28%  Similarity=0.563  Sum_probs=22.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           49 IVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      +++|.|++|+||||+++.+...+..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~   26 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRA   26 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            6889999999999999999988764

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=97.23  E-value=0.00022  Score=51.05  Aligned_cols=40  Identities=18%  Similarity=0.223  Sum_probs=21.0

Q ss_pred             hHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           31 RLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        31 R~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      ++...+.+.+...+.+.--|+|+|.+|+|||||+..+...
T Consensus        14 ~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           14 LVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             ----------------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence            4444455545444455567899999999999999888754

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.23  E-value=0.00023  Score=49.95  Aligned_cols=25  Identities=16%  Similarity=0.255  Sum_probs=21.7

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      ..+.+|+|++|+|||||+..+...+
T Consensus        26 ~g~~~i~G~NGsGKStll~ai~~~l   50 (182)
T 3kta_A           26 KGFTAIVGANGSGKSNIGDAILFVL   50 (182)
T ss_dssp             SSEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHH
Confidence            3588999999999999999987654

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.22  E-value=0.00078  Score=55.46  Aligned_cols=112  Identities=14%  Similarity=0.162  Sum_probs=60.8

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCC---------------ch-hH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLE---------------FS-EE  109 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~---------------~~-~~  109 (183)
                      +..+++|.|++|+|||||++.++......  -..++|+.....  ...+...+ ..++..               .+ ..
T Consensus       280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~--G~~vi~~~~ee~--~~~l~~~~-~~~g~~~~~~~~~g~~~~~~~~p~~L  354 (525)
T 1tf7_A          280 KDSIILATGATGTGKTLLVSRFVENACAN--KERAILFAYEES--RAQLLRNA-YSWGMDFEEMERQNLLKIVCAYPESA  354 (525)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHHHHTT--TCCEEEEESSSC--HHHHHHHH-HTTSCCHHHHHHTTSEEECCCCGGGS
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHhC--CCCEEEEEEeCC--HHHHHHHH-HHcCCCHHHHHhCCCEEEEEeccccC
Confidence            44689999999999999999999876643  223455544332  22222222 112111               00 11


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEEeCCCCccc----------ccccCcCCCCCCCCcEEEEEecCh
Q 035585          110 AESRRASRLYERLKKEKMILVILDNIWKYLD----------LETVGIPFGDDHRGCKLLLTARDC  164 (183)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~----------~~~l~~~~~~~~~~~~iiitsr~~  164 (183)
                      +.......+.......++-+||+|-...++.          +..+...+  ...|..+|+++++.
T Consensus       355 S~g~~q~~~~a~~l~~~p~llilDp~~~Ld~~~~~~~~~~~i~~ll~~l--~~~g~tvilvsh~~  417 (525)
T 1tf7_A          355 GLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYA--KQEEITGLFTNTSD  417 (525)
T ss_dssp             CHHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHH--HHTTCEEEEEEECS
T ss_pred             CHHHHHHHHHHHHHhhCCCEEEEcChHHHHhhCChHHHHHHHHHHHHHH--HhCCCEEEEEECcc
Confidence            2233344445555557888999993221111          11111111  23477899999986

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=97.22  E-value=0.00022  Score=55.91  Aligned_cols=27  Identities=33%  Similarity=0.406  Sum_probs=23.2

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +..+++|.||+|+|||||++.++....
T Consensus        29 ~Ge~~~llGpsGsGKSTLLr~iaGl~~   55 (359)
T 3fvq_A           29 PGEILFIIGASGCGKTTLLRCLAGFEQ   55 (359)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             CCCEEEEECCCCchHHHHHHHHhcCCC
Confidence            447899999999999999999986543

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=97.22  E-value=0.001  Score=48.29  Aligned_cols=53  Identities=19%  Similarity=0.159  Sum_probs=34.7

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAE  100 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  100 (183)
                      +..+|.+.|+.|+||||+++.+...+.... + .+....-+.....-+..+.++.
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~-~-~v~~~~~p~~~~~g~~i~~~l~   57 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAERLRERG-I-EVQLTREPGGTPLAERIRELLL   57 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHTTT-C-CEEEEESSCSSHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHHHcC-C-CcccccCCCCCHHHHHHHHHHh
Confidence            346889999999999999999999887652 2 2334444443333333444443

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=97.20  E-value=0.0023  Score=59.23  Aligned_cols=86  Identities=21%  Similarity=0.268  Sum_probs=57.8

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchh------HHHHHHHHHHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSE------EAESRRASRLY  119 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~~~  119 (183)
                      +.+++.|+|+.|+|||||+.++.......  -..++|+++....+...     ++.++.....      ...+..+..+.
T Consensus      1430 rg~~iei~g~~~sGkttl~~~~~a~~~~~--g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~ 1502 (1706)
T 3cmw_A         1430 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1502 (1706)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHH
Confidence            45789999999999999999998775543  45688888877655432     5555544222      12233344444


Q ss_pred             HHHhcCCeEEEEEeCCCCc
Q 035585          120 ERLKKEKMILVILDNIWKY  138 (183)
Q Consensus       120 ~~~~~~~~~llvlD~~~~~  138 (183)
                      ..++....-+||+|.+.-+
T Consensus      1503 ~~~~s~~~~~vvvDsv~al 1521 (1706)
T 3cmw_A         1503 ALARSGAVDVIVVDSVAAL 1521 (1706)
T ss_dssp             HHHHHTCCSEEEESCSTTC
T ss_pred             HHHHcCCCCEEEEccHHhC
Confidence            4556677889999987544

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.17  E-value=0.00029  Score=51.00  Aligned_cols=24  Identities=33%  Similarity=0.461  Sum_probs=20.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           49 IVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +++|.|+||+||+|.|+.++.++.
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~g   25 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEKG   25 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            467889999999999999988753

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=97.17  E-value=0.0012  Score=48.72  Aligned_cols=53  Identities=13%  Similarity=0.229  Sum_probs=35.5

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIA   99 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   99 (183)
                      +..+|.+.|++|+||||+++.+...+... .+..+....-+.....-+..+.++
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~-~~~~~~~~rep~~t~~g~~ir~~l   78 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQQN-GIDHITRTREPGGTLLAEKLRALV   78 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSCSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCeeeeecCCCCCHHHHHHHHHH
Confidence            34689999999999999999999988765 233244444444444444444443

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=97.17  E-value=0.00033  Score=51.42  Aligned_cols=27  Identities=22%  Similarity=0.197  Sum_probs=23.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ....++|.|++|+||||+++.+...+.
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l~   41 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNFC   41 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            345799999999999999999988764

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.17  E-value=0.0006  Score=52.70  Aligned_cols=40  Identities=28%  Similarity=0.341  Sum_probs=30.8

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ   87 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~   87 (183)
                      +..+++|+|++|+||||++..++..+...  -..+.++.+..
T Consensus       104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~--g~kVllid~D~  143 (320)
T 1zu4_A          104 RLNIFMLVGVNGTGKTTSLAKMANYYAEL--GYKVLIAAADT  143 (320)
T ss_dssp             SCEEEEEESSTTSSHHHHHHHHHHHHHHT--TCCEEEEECCC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCC
Confidence            35689999999999999999999888754  33466655543

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=97.16  E-value=0.0006  Score=50.01  Aligned_cols=41  Identities=29%  Similarity=0.361  Sum_probs=29.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ   87 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~   87 (183)
                      +..++.|.|++|+|||+|+.+++.+.... ....++|+....
T Consensus        29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~-~~~~v~~~s~E~   69 (251)
T 2zts_A           29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEE-YGEPGVFVTLEE   69 (251)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSS
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHHh-cCCCceeecccC
Confidence            34689999999999999999987654332 133466766553

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=97.16  E-value=0.0014  Score=47.56  Aligned_cols=53  Identities=15%  Similarity=0.204  Sum_probs=36.9

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHH
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAE  100 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  100 (183)
                      ..+|.+.|+.|+||||+++.+...+.... +..+.+..-+....+-+..+.++.
T Consensus         3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~-~~~v~~~rep~~t~~g~~ir~~l~   55 (213)
T 4tmk_A            3 SKYIVIEGLEGAGKTTARNVVVETLEQLG-IRDMVFTREPGGTQLAEKLRSLLL   55 (213)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESSCSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcC-CCcceeeeCCCCCHHHHHHHHHHh
Confidence            35789999999999999999999987752 223445444554445555555554

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=97.15  E-value=0.0029  Score=46.40  Aligned_cols=55  Identities=22%  Similarity=0.208  Sum_probs=31.9

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhc--ccceEEEEecCCcCHHHHHHHHHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKL--FDQVVFSEVSQTPDIKKIHGEIAE  100 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~  100 (183)
                      +...|.+.|++|+||||+++.+...+.....  ...+.....+.....-+..+.++.
T Consensus        24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~~t~~g~~ir~~l~   80 (227)
T 3v9p_A           24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREILL   80 (227)
T ss_dssp             CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSSSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCCCChHHHHHHHHHH
Confidence            3467899999999999999999998876410  112344444444333334444443

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=97.14  E-value=0.00071  Score=50.86  Aligned_cols=37  Identities=19%  Similarity=0.232  Sum_probs=27.9

Q ss_pred             HHHHHHHhccC-C-ccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           35 LKSIQDALTDV-N-VNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        35 l~~l~~~l~~~-~-~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      ...+.+++... + ...++++||+|+|||+++..+++..
T Consensus        90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~  128 (267)
T 1u0j_A           90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence            34455666543 2 4579999999999999999998853

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.14  E-value=0.00031  Score=51.21  Aligned_cols=23  Identities=22%  Similarity=0.241  Sum_probs=20.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHHhHH
Q 035585           49 IVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      .++|.|++|+||||+++.+...+
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999998875

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.14  E-value=0.00034  Score=50.57  Aligned_cols=23  Identities=17%  Similarity=0.082  Sum_probs=20.6

Q ss_pred             EEEEEeCCCCcHHHHHHHHHhHH
Q 035585           49 IVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      .++|.|++|+||||+++.+...+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            37899999999999999998865

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=97.14  E-value=0.00041  Score=55.43  Aligned_cols=25  Identities=28%  Similarity=0.387  Sum_probs=22.0

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      ...++|+|++|+|||||++.+....
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~   93 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIG   93 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCC
Confidence            4589999999999999999998743

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=97.13  E-value=0.00029  Score=55.69  Aligned_cols=27  Identities=30%  Similarity=0.388  Sum_probs=23.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +..+++|.|++|+|||||++.+.....
T Consensus        28 ~Ge~~~llGpsGsGKSTLLr~iaGl~~   54 (381)
T 3rlf_A           28 EGEFVVFVGPSGCGKSTLLRMIAGLET   54 (381)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence            457899999999999999999986553

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=97.13  E-value=0.0003  Score=55.23  Aligned_cols=27  Identities=30%  Similarity=0.337  Sum_probs=23.2

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ...+++|.|++|+|||||++.++....
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~   54 (359)
T 2yyz_A           28 DGEFVALLGPSGCGKTTTLLMLAGIYK   54 (359)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             CCCEEEEEcCCCchHHHHHHHHHCCCC
Confidence            457899999999999999999986543

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=97.12  E-value=0.00091  Score=64.29  Aligned_cols=72  Identities=19%  Similarity=0.196  Sum_probs=0.0

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCC--------chhHHHHHHHHHH
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLE--------FSEEAESRRASRL  118 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~--------~~~~~~~~~~~~~  118 (183)
                      .+-++++||+|+|||++|+.+.......    ....++++...+...+...+...+...        .|...        
T Consensus      1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~----~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~-------- 1334 (2695)
T 4akg_A         1267 KRGIILCGPPGSGKTMIMNNALRNSSLY----DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSD-------- 1334 (2695)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHHSCSSC----EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSS--------
T ss_pred             CCeEEEECCCCCCHHHHHHHHHhcCCCC----ceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCC--------


Q ss_pred             HHHHhcCCeEEEEEeCCC
Q 035585          119 YERLKKEKMILVILDNIW  136 (183)
Q Consensus       119 ~~~~~~~~~~llvlD~~~  136 (183)
                            +++.+|++||++
T Consensus      1335 ------gk~~VlFiDEin 1346 (2695)
T 4akg_A         1335 ------IKNLVLFCDEIN 1346 (2695)
T ss_dssp             ------SSCEEEEEETTT
T ss_pred             ------CceEEEEecccc

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=97.12  E-value=0.00036  Score=49.95  Aligned_cols=26  Identities=27%  Similarity=0.428  Sum_probs=22.5

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +..+++|+|+.|+||||+++.+...+
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~l   36 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNKY   36 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHhc
Confidence            44679999999999999999988763

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.12  E-value=0.00036  Score=51.51  Aligned_cols=26  Identities=31%  Similarity=0.487  Sum_probs=22.7

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +.+++|.|++|+||||+++.+...+.
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~~lg   34 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLARALG   34 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45899999999999999999987654

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=97.11  E-value=0.00036  Score=49.88  Aligned_cols=24  Identities=25%  Similarity=0.398  Sum_probs=21.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           49 IVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +++|.|++|+||||+++.+...+.
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg   27 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALG   27 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcC
Confidence            799999999999999999988654

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.11  E-value=0.0004  Score=52.38  Aligned_cols=28  Identities=25%  Similarity=0.343  Sum_probs=24.0

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      +..++.|+|++|+|||||+..++.....
T Consensus        29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~   56 (279)
T 1nlf_A           29 AGTVGALVSPGGAGKSMLALQLAAQIAG   56 (279)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence            4478999999999999999999876643

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.11  E-value=0.00079  Score=49.41  Aligned_cols=28  Identities=25%  Similarity=0.337  Sum_probs=24.7

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      ....++|.|++|+||||+++.+...+..
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~   52 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHRLVK   52 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence            4468999999999999999999998764

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.11  E-value=0.00039  Score=54.84  Aligned_cols=113  Identities=16%  Similarity=0.133  Sum_probs=57.9

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHH--HhCCCchhHHHHHHHHHHHHHH
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAE--KLGLEFSEEAESRRASRLYERL  122 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~l~~~~~~~~~~~~~~~~~~~~  122 (183)
                      .+..+++|+|++|+||||+++.+...+... .-..+.++.-+........ ..+..  .++...     ......+...+
T Consensus       134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~-~~g~I~~~e~~~e~~~~~~-~~~v~Q~~~g~~~-----~~~~~~l~~~L  206 (372)
T 2ewv_A          134 RKMGLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIEDPIEYVFKHK-KSIVNQREVGEDT-----KSFADALRAAL  206 (372)
T ss_dssp             SSSEEEEEECSSSSSHHHHHHHHHHHHHHH-SCCEEEEEESSCCSCCCCS-SSEEEEEEBTTTB-----SCSHHHHHHHT
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhcCcC-CCcEEEEecccHhhhhccC-ceEEEeeecCCCH-----HHHHHHHHHHh
Confidence            455789999999999999999999877653 0122323221110000000 00000  000000     00112333444


Q ss_pred             hcCCeEEEEEeCCCCcccccccCcCCCCCCCCcEEEEEecChHHHh
Q 035585          123 KKEKMILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVLL  168 (183)
Q Consensus       123 ~~~~~~llvlD~~~~~~~~~~l~~~~~~~~~~~~iiitsr~~~~~~  168 (183)
                      + ..+-+|++||+.+...+.......   ..|..++.|+|+.+...
T Consensus       207 ~-~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~~~~  248 (372)
T 2ewv_A          207 R-EDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTAID  248 (372)
T ss_dssp             T-SCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCSHHH
T ss_pred             h-hCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcchHHH
Confidence            4 567799999997554333322221   23556888888766443

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=97.10  E-value=0.001  Score=47.15  Aligned_cols=111  Identities=17%  Similarity=0.112  Sum_probs=52.8

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCC
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEK  126 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~  126 (183)
                      ..+++++|++|+||||++..++.++....  ..+.++....+...  ....+...++........ .....+...+. ++
T Consensus         3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g--~~v~~~~~~~d~r~--~~~~i~s~~g~~~~~~~~-~~~~~~~~~~~-~~   76 (184)
T 2orw_A            3 GKLTVITGPMYSGKTTELLSFVEIYKLGK--KKVAVFKPKIDSRY--HSTMIVSHSGNGVEAHVI-ERPEEMRKYIE-ED   76 (184)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHHHHTT--CEEEEEEEC-------CCCEECC----CEECEEE-SSGGGGGGGCC-TT
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeecccccc--CcccEEecCCCceeeEEE-CCHHHHHHHhc-CC
Confidence            35789999999999999988777765432  23444333221100  000000001110000000 00111222222 35


Q ss_pred             eEEEEEeCCCCc-ccccccCcCCCCCCCCcEEEEEecChH
Q 035585          127 MILVILDNIWKY-LDLETVGIPFGDDHRGCKLLLTARDCN  165 (183)
Q Consensus       127 ~~llvlD~~~~~-~~~~~l~~~~~~~~~~~~iiitsr~~~  165 (183)
                      .-+|+|||++.. .++...+..+.+.  +..+++|.++.+
T Consensus        77 ~dvviIDE~Q~~~~~~~~~l~~l~~~--~~~Vi~~Gl~~~  114 (184)
T 2orw_A           77 TRGVFIDEVQFFNPSLFEVVKDLLDR--GIDVFCAGLDLT  114 (184)
T ss_dssp             EEEEEECCGGGSCTTHHHHHHHHHHT--TCEEEEEEESBC
T ss_pred             CCEEEEECcccCCHHHHHHHHHHHHC--CCCEEEEeeccc
Confidence            679999999866 2322222222222  777898888543

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=97.10  E-value=0.00034  Score=52.21  Aligned_cols=26  Identities=38%  Similarity=0.355  Sum_probs=23.3

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ...++|+|++|+||||+++.+...+.
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~lg   73 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSLG   73 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence            46899999999999999999988764

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=97.08  E-value=0.00035  Score=55.13  Aligned_cols=27  Identities=26%  Similarity=0.350  Sum_probs=23.1

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ...+++|.|++|+|||||++.++....
T Consensus        36 ~Ge~~~llGpnGsGKSTLLr~iaGl~~   62 (372)
T 1v43_A           36 DGEFLVLLGPSGCGKTTTLRMIAGLEE   62 (372)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence            457899999999999999999986543

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=97.08  E-value=0.00075  Score=55.94  Aligned_cols=45  Identities=24%  Similarity=0.253  Sum_probs=32.3

Q ss_pred             cchHHHHHHHHHHh--ccCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           29 KSRLSTLKSIQDAL--TDVNVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        29 ~gR~~~l~~l~~~l--~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      +.|......+....  .-.+..+++|+|++|+|||||++.+...+..
T Consensus       349 f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~  395 (552)
T 3cr8_A          349 YSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLME  395 (552)
T ss_dssp             TSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred             ccccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhcc
Confidence            34444444555443  2234578999999999999999999998864

>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*

Probab=97.07  E-value=0.0038  Score=50.81  Aligned_cols=91  Identities=23%  Similarity=0.325  Sum_probs=56.4

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC-CcCHHHHHHHHHHHhCCC-----------------c
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ-TPDIKKIHGEIAEKLGLE-----------------F  106 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~l~~~-----------------~  106 (183)
                      .+.+-++|.|++|+|||+|+..+++..... +.+.++|+-+.. .....++...+...-...                 .
T Consensus       163 gkGqr~gIfgg~GvGKT~L~~~l~~~~a~~-~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~  241 (498)
T 1fx0_B          163 RRGGKIGLFGGAGVGKTVLIMELINNIAKA-HGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNE  241 (498)
T ss_dssp             CTTCCEEEEECSSSSHHHHHHHHHHHTTTT-CSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTS
T ss_pred             ccCCeEEeecCCCCCchHHHHHHHHHHHhh-CCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCC
Confidence            345678999999999999999999876543 234556665543 355667777776531111                 0


Q ss_pred             hh-H--HHHHHHHHHHHHHhc--CCeEEEEEeCCC
Q 035585          107 SE-E--AESRRASRLYERLKK--EKMILVILDNIW  136 (183)
Q Consensus       107 ~~-~--~~~~~~~~~~~~~~~--~~~~llvlD~~~  136 (183)
                      +. .  ........+-++++.  ++.+||++|++.
T Consensus       242 p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit  276 (498)
T 1fx0_B          242 PPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF  276 (498)
T ss_dssp             CHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence            10 0  111112334456653  789999999975

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=97.07  E-value=0.00035  Score=55.11  Aligned_cols=27  Identities=26%  Similarity=0.332  Sum_probs=23.1

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ...+++|.|++|+|||||++.++....
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~   54 (372)
T 1g29_1           28 DGEFMILLGPSGCGKTTTLRMIAGLEE   54 (372)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence            446899999999999999999986543

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=97.06  E-value=0.002  Score=50.32  Aligned_cols=31  Identities=29%  Similarity=0.509  Sum_probs=26.0

Q ss_pred             cCCccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           44 DVNVNIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        44 ~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      ..+...++|+|.+|+|||||+..+...+...
T Consensus        76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~  106 (355)
T 3p32_A           76 SGNAHRVGITGVPGVGKSTAIEALGMHLIER  106 (355)
T ss_dssp             CCCSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence            3456789999999999999999998877543

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=97.04  E-value=0.00022  Score=54.38  Aligned_cols=28  Identities=25%  Similarity=0.404  Sum_probs=21.2

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      +..+|+|.|++|+||||+++.+...+..
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~   31 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRR   31 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            4568999999999999999999887653

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=97.03  E-value=0.0004  Score=49.19  Aligned_cols=24  Identities=33%  Similarity=0.567  Sum_probs=21.2

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      -.++|+|++|+|||||++.+....
T Consensus        30 ~kv~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           30 FKVVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            468999999999999999998754

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.03  E-value=0.00047  Score=47.18  Aligned_cols=25  Identities=24%  Similarity=0.319  Sum_probs=21.7

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      .++.+|+|++|+|||+++.++..-+
T Consensus        23 ~g~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           23 EGINLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4688999999999999999987644

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.02  E-value=0.0005  Score=49.77  Aligned_cols=23  Identities=39%  Similarity=0.485  Sum_probs=20.5

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFAR   69 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~   69 (183)
                      +.+++|.|++|+||||+++.+..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999999865

>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...

Probab=97.02  E-value=0.0061  Score=49.40  Aligned_cols=91  Identities=20%  Similarity=0.314  Sum_probs=55.6

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC-cCHHHHHHHHHHHhCCC----------------ch
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT-PDIKKIHGEIAEKLGLE----------------FS  107 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~l~~~----------------~~  107 (183)
                      .+.+-++|.|++|+|||+|+..++...... +.+.++|.-+... ....++...+...-...                .+
T Consensus       151 gkGQr~~Ifgg~G~GKT~L~~~i~~~~~~~-~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~p  229 (482)
T 2ck3_D          151 AKGGKIGLFGGAGVGKTVLIMELINNVAKA-HGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEP  229 (482)
T ss_dssp             ETTCEEEEEECTTSSHHHHHHHHHHHTTTT-CSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSC
T ss_pred             ccCCeeeeecCCCCChHHHHHHHHHhhHhh-CCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCCC
Confidence            345788999999999999999998876443 2234556555443 45566767775542111                11


Q ss_pred             h-H--HHHHHHHHHHHHHh--cCCeEEEEEeCCC
Q 035585          108 E-E--AESRRASRLYERLK--KEKMILVILDNIW  136 (183)
Q Consensus       108 ~-~--~~~~~~~~~~~~~~--~~~~~llvlD~~~  136 (183)
                      . .  ........+-++++  +++.+||++|++.
T Consensus       230 ~~~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsit  263 (482)
T 2ck3_D          230 PGARARVALTGLTVAEYFRDQEGQDVLLFIDNIF  263 (482)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence            1 0  11111233445554  3799999999975

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=97.02  E-value=0.00039  Score=55.64  Aligned_cols=28  Identities=32%  Similarity=0.471  Sum_probs=24.0

Q ss_pred             cCCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           44 DVNVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        44 ~~~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      ...+.+++|+|++|+||||+++.++..+
T Consensus       255 ~~~~~lIil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             CSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence            3456889999999999999999988764

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=97.01  E-value=0.00046  Score=54.76  Aligned_cols=26  Identities=38%  Similarity=0.538  Sum_probs=22.6

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +..+++|.|++|+|||||++.+....
T Consensus        46 ~Ge~~~llGpsGsGKSTLLr~iaGl~   71 (390)
T 3gd7_A           46 PGQRVGLLGRTGSGKSTLLSAFLRLL   71 (390)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCCC
Confidence            45789999999999999999998643

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.01  E-value=0.0011  Score=51.46  Aligned_cols=29  Identities=24%  Similarity=0.421  Sum_probs=25.2

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      .+..+++|+|++|+|||||++.+...+..
T Consensus        53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~   81 (337)
T 2qm8_A           53 GRAIRVGITGVPGVGKSTTIDALGSLLTA   81 (337)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence            45679999999999999999999877654

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=97.00  E-value=0.00011  Score=53.53  Aligned_cols=112  Identities=15%  Similarity=0.197  Sum_probs=54.8

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhc
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKK  124 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~  124 (183)
                      .+..+.+++|+-|+||||.+...+.+....  ...++.+....+...  -...+.+.++......... ....++..+. 
T Consensus        26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~--g~kVli~k~~~d~R~--ge~~i~s~~g~~~~a~~~~-~~~~~~~~~~-   99 (214)
T 2j9r_A           26 QNGWIEVICGSMFSGKSEELIRRVRRTQFA--KQHAIVFKPCIDNRY--SEEDVVSHNGLKVKAVPVS-ASKDIFKHIT-   99 (214)
T ss_dssp             CSCEEEEEECSTTSCHHHHHHHHHHHHHHT--TCCEEEEECC-------------------CCEEECS-SGGGGGGGCC-
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEeccCCcc--hHHHHHhhcCCeeEEeecC-CHHHHHHHHh-
Confidence            344688899999999999999988888765  334445444333211  1123333333221110000 0012222221 


Q ss_pred             CCeEEEEEeCCCCc--ccccccCcCCCCCCCCcEEEEEecChH
Q 035585          125 EKMILVILDNIWKY--LDLETVGIPFGDDHRGCKLLLTARDCN  165 (183)
Q Consensus       125 ~~~~llvlD~~~~~--~~~~~l~~~~~~~~~~~~iiitsr~~~  165 (183)
                      +.--+|+|||++-.  +.++.+ ..+.+  .+..||++.++-+
T Consensus       100 ~~~dvViIDEaQF~~~~~V~~l-~~l~~--~~~~Vi~~Gl~~D  139 (214)
T 2j9r_A          100 EEMDVIAIDEVQFFDGDIVEVV-QVLAN--RGYRVIVAGLDQD  139 (214)
T ss_dssp             SSCCEEEECCGGGSCTTHHHHH-HHHHH--TTCEEEEEECSBC
T ss_pred             cCCCEEEEECcccCCHHHHHHH-HHHhh--CCCEEEEEecccc
Confidence            23459999999754  234333 22222  3778999999544

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.99  E-value=0.00056  Score=54.04  Aligned_cols=27  Identities=22%  Similarity=0.058  Sum_probs=23.4

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      .....++|+|++|+|||||++.+....
T Consensus       167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          167 PKKRYWLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            455799999999999999999998754

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.99  E-value=0.00045  Score=53.40  Aligned_cols=25  Identities=24%  Similarity=0.251  Sum_probs=22.3

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .+++|+|++|+|||||++.++..+.
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l~   30 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADALP   30 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcC
Confidence            4799999999999999999988754

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.99  E-value=0.00027  Score=55.42  Aligned_cols=27  Identities=33%  Similarity=0.459  Sum_probs=23.1

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ...+++|.|++|+|||||++.++....
T Consensus        30 ~Ge~~~llGpnGsGKSTLLr~iaGl~~   56 (353)
T 1oxx_K           30 NGERFGILGPSGAGKTTFMRIIAGLDV   56 (353)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            447899999999999999999986543

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.99  E-value=0.00048  Score=53.03  Aligned_cols=26  Identities=23%  Similarity=0.373  Sum_probs=22.9

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ..+++|.||+|+|||+|+..++..+.
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~~   28 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRLN   28 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence            46889999999999999999987664

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.98  E-value=0.00053  Score=51.93  Aligned_cols=23  Identities=22%  Similarity=0.648  Sum_probs=20.7

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFA   68 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~   68 (183)
                      ++.+|+|+|++|+||||+++.+.
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            35689999999999999999988

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.98  E-value=0.00048  Score=53.59  Aligned_cols=25  Identities=28%  Similarity=0.339  Sum_probs=22.6

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .+++|.|++|+|||||+..++..+.
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~   32 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN   32 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC
Confidence            4899999999999999999988764

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.98  E-value=0.00043  Score=53.80  Aligned_cols=26  Identities=23%  Similarity=0.391  Sum_probs=23.2

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ..+++|+||+|+|||+|+..++.++.
T Consensus        40 ~~lIvI~GPTgsGKTtLa~~LA~~l~   65 (339)
T 3a8t_A           40 EKLLVLMGATGTGKSRLSIDLAAHFP   65 (339)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHCC
Confidence            46899999999999999999998764

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.97  E-value=0.00066  Score=49.87  Aligned_cols=27  Identities=22%  Similarity=0.320  Sum_probs=23.2

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      .+...++|+|++|+||||+++.+...+
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~~l   40 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAKDF   40 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            345689999999999999999998755

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=96.97  E-value=0.00047  Score=49.06  Aligned_cols=24  Identities=33%  Similarity=0.567  Sum_probs=20.9

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      -.++|+|++|+|||||++.+....
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~~   29 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRNE   29 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECcCCCCHHHHHHHHhcCC
Confidence            458899999999999999998753

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.97  E-value=0.00056  Score=52.52  Aligned_cols=27  Identities=22%  Similarity=0.204  Sum_probs=23.4

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .+.+++|.||+|+|||+|+..++..+.
T Consensus         9 ~~~~i~i~GptgsGKt~la~~La~~~~   35 (316)
T 3foz_A            9 LPKAIFLMGPTASGKTALAIELRKILP   35 (316)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHhCC
Confidence            356889999999999999999987754

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.94  E-value=0.00057  Score=51.92  Aligned_cols=23  Identities=35%  Similarity=0.556  Sum_probs=20.7

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      .++.|.|++|+||||+++.+...
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~   25 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAK   25 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            57899999999999999998874

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.92  E-value=0.0004  Score=54.53  Aligned_cols=28  Identities=32%  Similarity=0.378  Sum_probs=24.2

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      +...++|+|++|+|||||++.+...+..
T Consensus       174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~  201 (361)
T 2gza_A          174 LERVIVVAGETGSGKTTLMKALMQEIPF  201 (361)
T ss_dssp             TTCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence            3468999999999999999999887654

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.91  E-value=0.0005  Score=53.03  Aligned_cols=26  Identities=27%  Similarity=0.455  Sum_probs=22.8

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +.++++|+|++|+|||||++.+....
T Consensus         3 ~i~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            3 PIAVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cccEEEEEecCCCCHHHHHHHHHhhc
Confidence            45789999999999999999998654

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=96.91  E-value=0.00098  Score=51.01  Aligned_cols=25  Identities=20%  Similarity=0.357  Sum_probs=21.7

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ..+++|.|++|+|||||++.+. ...
T Consensus       165 G~i~~l~G~sG~GKSTLln~l~-~~~  189 (302)
T 2yv5_A          165 GFICILAGPSGVGKSSILSRLT-GEE  189 (302)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence            3689999999999999999998 543

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=96.89  E-value=0.0027  Score=46.56  Aligned_cols=39  Identities=21%  Similarity=0.100  Sum_probs=29.8

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT   88 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~   88 (183)
                      -.+.+.|++|+||||++..+...+..+.  ..+.++.+...
T Consensus         7 l~I~~~~kgGvGKTt~a~~la~~l~~~G--~~V~v~d~D~q   45 (228)
T 2r8r_A            7 LKVFLGAAPGVGKTYAMLQAAHAQLRQG--VRVMAGVVETH   45 (228)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHHTT--CCEEEEECCCT
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHHCC--CCEEEEEeCCC
Confidence            3588899999999999999999887652  24556666554

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.89  E-value=0.00041  Score=50.83  Aligned_cols=26  Identities=31%  Similarity=0.323  Sum_probs=22.4

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      .+..+++|.|++|+||||+++.+...
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            34568999999999999999998765

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.89  E-value=0.00056  Score=53.67  Aligned_cols=27  Identities=26%  Similarity=0.368  Sum_probs=23.6

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      ...++|+|++|+|||||++.+...+..
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~~  196 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFNT  196 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            367999999999999999999887654

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=96.89  E-value=0.0013  Score=53.89  Aligned_cols=47  Identities=6%  Similarity=-0.046  Sum_probs=35.8

Q ss_pred             cccchHHHHHHHHHHhc--cCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           27 AFKSRLSTLKSIQDALT--DVNVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        27 ~~~gR~~~l~~l~~~l~--~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      ..+.|.+..+.+.+...  .....++.+.|.+|+||||+++.+..++..
T Consensus       373 ~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~  421 (511)
T 1g8f_A          373 EWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ  421 (511)
T ss_dssp             TTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             ccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence            34456666667777652  334568999999999999999999999874

>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A

Probab=96.88  E-value=0.0024  Score=53.69  Aligned_cols=63  Identities=14%  Similarity=0.168  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHH
Q 035585           32 LSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIA   99 (183)
Q Consensus        32 ~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   99 (183)
                      +.+.+.+...+.   .+..+|+|++|+|||+++..+...+...  ....+.+.+.++.+...+...+.
T Consensus       183 ~~Q~~av~~~l~---~~~~li~GppGTGKT~~~~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~  245 (624)
T 2gk6_A          183 HSQVYAVKTVLQ---RPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIH  245 (624)
T ss_dssp             HHHHHHHHHHHT---CSEEEEECCTTSCHHHHHHHHHHHHHTS--SSCCEEEEESSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc---CCCeEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCcHHHHHHHHHHHH
Confidence            334444444442   3578999999999999988887766532  23355666777666666665553

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=96.87  E-value=0.0099  Score=42.77  Aligned_cols=49  Identities=18%  Similarity=0.293  Sum_probs=32.7

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIA   99 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   99 (183)
                      ..|++-|..|+||||+++.+...+...  + .+++..-+.....-+..+.++
T Consensus         3 kFI~~EG~dGsGKsTq~~~L~~~L~~~--~-~v~~~~eP~~t~~g~~ir~~l   51 (205)
T 4hlc_A            3 AFITFEGPEGSGKTTVINEVYHRLVKD--Y-DVIMTREPGGVPTGEEIRKIV   51 (205)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHTTT--S-CEEEEESSTTCHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHCC--C-CEEEeeCCCCChHHHHHHHHH
Confidence            367888999999999999999988532  2 344444444444444444444

>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}

Probab=96.87  E-value=0.0022  Score=50.05  Aligned_cols=43  Identities=26%  Similarity=0.327  Sum_probs=31.4

Q ss_pred             hccCCccEEEEEeCCCCcHHHHHHHHHhHHh--hhhcccceEEEEec
Q 035585           42 LTDVNVNIVGVYGMGGIGKTTLVKEFARQAS--EEKLFDQVVFSEVS   86 (183)
Q Consensus        42 l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~--~~~~~~~~~~~~~~   86 (183)
                      +.....+++.+.|.+|+||||++..++..+.  ..  -..+..+++.
T Consensus        13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~--g~~vllid~D   57 (348)
T 3io3_A           13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQP--NEQFLLISTD   57 (348)
T ss_dssp             HTCTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCT--TSCEEEEECC
T ss_pred             hcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcC--CCeEEEEECC
Confidence            3355668999999999999999999988777  33  2234454444

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=96.86  E-value=0.00037  Score=58.29  Aligned_cols=48  Identities=15%  Similarity=0.110  Sum_probs=34.8

Q ss_pred             cccccchHHHHHHHHHHhccCCcc-----------EEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           25 YEAFKSRLSTLKSIQDALTDVNVN-----------IVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        25 ~~~~~gR~~~l~~l~~~l~~~~~~-----------~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ...++|.+.....+...+......           .++++|++|+|||+||+.++....
T Consensus       294 ~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~  352 (595)
T 3f9v_A          294 APSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAP  352 (595)
T ss_dssp             SSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCS
T ss_pred             cchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCC
Confidence            356788887666665544433211           699999999999999999987653

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=96.86  E-value=0.00037  Score=51.26  Aligned_cols=110  Identities=10%  Similarity=0.032  Sum_probs=56.7

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcC
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKE  125 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~  125 (183)
                      ...+.+++|+-|+||||.+...+.+....  ...++.+....+... .  ..+.+.++......... ....++...  .
T Consensus        18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~--g~kvli~kp~~D~Ry-g--~~i~sr~G~~~~a~~i~-~~~di~~~~--~   89 (234)
T 2orv_A           18 RGQIQVILGPMFSGKSTELMRRVRRFQIA--QYKCLVIKYAKDTRY-S--SSFCTHDRNTMEALPAC-LLRDVAQEA--L   89 (234)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHHTT--TCCEEEEEETTCCCC--------------CEEEEES-SGGGGHHHH--T
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHHHHC--CCeEEEEeecCCccc-h--HHHHhhcCCeeEEEecC-CHHHHHHHh--c
Confidence            34688899999999998888877777654  334555554433211 1  23333333221110000 001122222  3


Q ss_pred             CeEEEEEeCCCCcccccccCcCCCCCCCCcEEEEEecChH
Q 035585          126 KMILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCN  165 (183)
Q Consensus       126 ~~~llvlD~~~~~~~~~~l~~~~~~~~~~~~iiitsr~~~  165 (183)
                      .--+|+|||++-...+..+...+.+  .|..||++.++-+
T Consensus        90 ~~dvViIDEaQF~~~v~el~~~l~~--~gi~VI~~GL~~D  127 (234)
T 2orv_A           90 GVAVIGIDEGQFFPDIVEFCEAMAN--AGKTVIVAALDGT  127 (234)
T ss_dssp             TCSEEEESSGGGCTTHHHHHHHHHH--TTCEEEEECCSBC
T ss_pred             cCCEEEEEchhhhhhHHHHHHHHHh--CCCEEEEEecccc
Confidence            3459999998755444444333333  5778999999833

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.85  E-value=0.0011  Score=46.55  Aligned_cols=26  Identities=19%  Similarity=0.193  Sum_probs=22.0

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      .+...++|+|++|+|||||+..+...
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            34457999999999999999998764

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=96.84  E-value=0.002  Score=50.33  Aligned_cols=27  Identities=33%  Similarity=0.536  Sum_probs=23.8

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      ...++|+|++|+|||||+..+...+..
T Consensus        74 ~~~v~lvG~pgaGKSTLln~L~~~~~~  100 (349)
T 2www_A           74 AFRVGLSGPPGAGKSTFIEYFGKMLTE  100 (349)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence            578999999999999999999886644

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.83  E-value=0.00067  Score=55.00  Aligned_cols=29  Identities=24%  Similarity=0.230  Sum_probs=24.6

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      .....++|+|++|+|||||++.++.....
T Consensus       136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p  164 (460)
T 2npi_A          136 FEGPRVVIVGGSQTGKTSLSRTLCSYALK  164 (460)
T ss_dssp             SSCCCEEEEESTTSSHHHHHHHHHHTTHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCcccc
Confidence            35578999999999999999999887643

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=96.83  E-value=0.0009  Score=53.21  Aligned_cols=26  Identities=23%  Similarity=0.480  Sum_probs=23.0

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ..+++|.||+|+|||+|+..++..+.
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~~   27 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKFN   27 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHCC
Confidence            35789999999999999999988764

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=96.82  E-value=0.0023  Score=47.33  Aligned_cols=38  Identities=34%  Similarity=0.447  Sum_probs=28.5

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEec
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVS   86 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~   86 (183)
                      +..++.+.|.+|+||||++..++..+. .  -..+..++..
T Consensus        13 ~~~i~~~~GkgGvGKTTl~~~La~~l~-~--g~~v~vvd~D   50 (262)
T 1yrb_A           13 ASMIVVFVGTAGSGKTTLTGEFGRYLE-D--NYKVAYVNLD   50 (262)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHT-T--TSCEEEEECC
T ss_pred             ceEEEEEeCCCCCCHHHHHHHHHHHHH-C--CCeEEEEeCC
Confidence            456788999999999999999998877 4  2234455543

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=96.80  E-value=0.00092  Score=46.01  Aligned_cols=23  Identities=17%  Similarity=0.403  Sum_probs=20.4

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      ..++|+|++|+|||||+..+...
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999763

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.79  E-value=0.00096  Score=52.12  Aligned_cols=29  Identities=28%  Similarity=0.413  Sum_probs=25.0

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      .+...++|.|++|+|||||++.+......
T Consensus        69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~   97 (347)
T 2obl_A           69 GIGQRIGIFAGSGVGKSTLLGMICNGASA   97 (347)
T ss_dssp             ETTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            44579999999999999999999988654

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.78  E-value=0.00096  Score=49.11  Aligned_cols=26  Identities=23%  Similarity=0.326  Sum_probs=23.1

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +..++|.|..|+||||+++.+...+.
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            46789999999999999999998874

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.76  E-value=0.00085  Score=48.26  Aligned_cols=27  Identities=22%  Similarity=0.231  Sum_probs=23.2

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ....++|.|++|+|||+|+..+..+..
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La~~g~   59 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELVQRGH   59 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhCC
Confidence            346789999999999999999988754

>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*

Probab=96.75  E-value=0.0079  Score=46.50  Aligned_cols=98  Identities=11%  Similarity=-0.093  Sum_probs=58.9

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhc
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKK  124 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~  124 (183)
                      .-.+.++++|+.|.||++.+..+...+.... +.....+......+..+    +                ...+...-..
T Consensus        16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~----l----------------~~~~~~~plf   74 (343)
T 1jr3_D           16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQG-FEEHHTFSIDPNTDWNA----I----------------FSLCQAMSLF   74 (343)
T ss_dssp             CCCSEEEEEESCHHHHHHHHHHHHHHHHHHT-CCEEEEEECCTTCCHHH----H----------------HHHHHHHHHC
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHHHHHHhCC-CCeeEEEEecCCCCHHH----H----------------HHHhcCcCCc
Confidence            4568999999999999999999988776432 22211222222222211    1                1111111123


Q ss_pred             CCeEEEEEeCCCC-c--ccccccCcCCCCCCCCcEEEEEecC
Q 035585          125 EKMILVILDNIWK-Y--LDLETVGIPFGDDHRGCKLLLTARD  163 (183)
Q Consensus       125 ~~~~llvlD~~~~-~--~~~~~l~~~~~~~~~~~~iiitsr~  163 (183)
                      .++.++|+|+++. +  ...+.+...+....+++.+|+++.+
T Consensus        75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~  116 (343)
T 1jr3_D           75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNK  116 (343)
T ss_dssp             CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESC
T ss_pred             cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCC
Confidence            6788999999987 4  3455565555555667877777643

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.74  E-value=0.00052  Score=53.27  Aligned_cols=109  Identities=19%  Similarity=0.090  Sum_probs=56.7

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCC
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEK  126 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~  126 (183)
                      ...++|+|++|+|||||++.+...+...   .+.+.++-........    ..+.+.. ..+ ........+...+. .+
T Consensus       171 g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~e~~~~~----~~~~i~~-~~g-gg~~~r~~la~aL~-~~  240 (330)
T 2pt7_A          171 GKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTEEIVFKH----HKNYTQL-FFG-GNITSADCLKSCLR-MR  240 (330)
T ss_dssp             TCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSCCCCCSS----CSSEEEE-ECB-TTBCHHHHHHHHTT-SC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCeecccccc----chhEEEE-EeC-CChhHHHHHHHHhh-hC
Confidence            3689999999999999999998876542   2334433221110000    0000000 000 00111223333344 67


Q ss_pred             eEEEEEeCCCCcccccccCcCCCCCCCCcEEEEEecChHHHh
Q 035585          127 MILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVLL  168 (183)
Q Consensus       127 ~~llvlD~~~~~~~~~~l~~~~~~~~~~~~iiitsr~~~~~~  168 (183)
                      +-+|++||+.....++.+ ..+..  .+..+++|+|+.+...
T Consensus       241 p~ilildE~~~~e~~~~l-~~~~~--g~~tvi~t~H~~~~~~  279 (330)
T 2pt7_A          241 PDRIILGELRSSEAYDFY-NVLCS--GHKGTLTTLHAGSSEE  279 (330)
T ss_dssp             CSEEEECCCCSTHHHHHH-HHHHT--TCCCEEEEEECSSHHH
T ss_pred             CCEEEEcCCChHHHHHHH-HHHhc--CCCEEEEEEcccHHHH
Confidence            889999999874333322 22221  1324788888877544

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=96.72  E-value=0.00085  Score=47.05  Aligned_cols=22  Identities=32%  Similarity=0.517  Sum_probs=19.6

Q ss_pred             EEEEEeCCCCcHHHHHHHHHhH
Q 035585           49 IVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      -++|+|++|+|||||+..+...
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~   25 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKT   25 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999998763

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=96.71  E-value=0.0011  Score=46.30  Aligned_cols=23  Identities=17%  Similarity=0.403  Sum_probs=20.7

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      ..++|+|++|+|||||+..+...
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            56899999999999999999864

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.71  E-value=0.001  Score=53.46  Aligned_cols=37  Identities=24%  Similarity=0.284  Sum_probs=28.4

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEe
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEV   85 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~   85 (183)
                      +.+++++|++|+||||++..++..+...  -..+.++++
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~~~--G~kVllv~~  135 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQKR--GLKPALIAA  135 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHHHH--HCCEEEECC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEec
Confidence            4589999999999999999999888754  223455444

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.70  E-value=0.0012  Score=44.71  Aligned_cols=23  Identities=22%  Similarity=0.452  Sum_probs=20.3

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      +.++|.|.+|+|||||+..+...
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46889999999999999998764

>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A

Probab=96.69  E-value=0.0032  Score=47.50  Aligned_cols=40  Identities=25%  Similarity=0.442  Sum_probs=31.4

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT   88 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~   88 (183)
                      .++++|.|.+|+||||++..++..+...  -..++.+++...
T Consensus         2 MkvIavs~KGGvGKTT~a~nLA~~La~~--G~rVlliD~D~q   41 (289)
T 2afh_E            2 MRQCAIYGKGGIGKSTTTQNLVAALAEM--GKKVMIVGCDPK   41 (289)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEEECSS
T ss_pred             ceEEEEeCCCcCcHHHHHHHHHHHHHHC--CCeEEEEecCCC
Confidence            3577788999999999999999988764  335777777644

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10

Probab=96.68  E-value=0.003  Score=46.99  Aligned_cols=39  Identities=23%  Similarity=0.405  Sum_probs=30.7

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT   88 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~   88 (183)
                      ++++|.|.+|+||||++..++..+...  -..++.+++...
T Consensus         2 ~vI~vs~KGGvGKTT~a~nLA~~la~~--G~~VlliD~D~q   40 (269)
T 1cp2_A            2 RQVAIYGKGGIGKSTTTQNLTSGLHAM--GKTIMVVGCDPK   40 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTT--TCCEEEEEECTT
T ss_pred             cEEEEecCCCCcHHHHHHHHHHHHHHC--CCcEEEEcCCCC
Confidence            467778999999999999999988764  335777777643

>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}

Probab=96.68  E-value=0.0007  Score=53.62  Aligned_cols=30  Identities=27%  Similarity=0.180  Sum_probs=25.2

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      .+.+-.+|.|++|+|||+|+..+++....+
T Consensus       173 grGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~  202 (427)
T 3l0o_A          173 GKGQRGMIVAPPKAGKTTILKEIANGIAEN  202 (427)
T ss_dssp             BTTCEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred             cCCceEEEecCCCCChhHHHHHHHHHHhhc
Confidence            455788999999999999999998877653

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.67  E-value=0.0013  Score=54.01  Aligned_cols=27  Identities=22%  Similarity=0.061  Sum_probs=23.1

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      ...++|+|++|+||||+++.+...+..
T Consensus       260 g~~i~I~GptGSGKTTlL~aL~~~i~~  286 (511)
T 2oap_1          260 KFSAIVVGETASGKTTTLNAIMMFIPP  286 (511)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCCC
Confidence            356999999999999999999876643

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.67  E-value=0.0018  Score=49.47  Aligned_cols=26  Identities=23%  Similarity=0.455  Sum_probs=22.2

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ..+++|.|++|+|||||++.+.....
T Consensus       169 geiv~l~G~sG~GKSTll~~l~g~~~  194 (301)
T 1u0l_A          169 GKISTMAGLSGVGKSSLLNAINPGLK  194 (301)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             CCeEEEECCCCCcHHHHHHHhccccc
Confidence            35899999999999999999876544

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=96.66  E-value=0.0016  Score=46.90  Aligned_cols=26  Identities=23%  Similarity=0.282  Sum_probs=22.0

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ..+.+|+|++|+||||++.++..-+.
T Consensus        23 ~~~~~I~G~NgsGKStil~ai~~~l~   48 (203)
T 3qks_A           23 EGINLIIGQNGSGKSSLLDAILVGLY   48 (203)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence            46889999999999999999875443

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.65  E-value=0.0013  Score=44.57  Aligned_cols=22  Identities=32%  Similarity=0.604  Sum_probs=19.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHHhH
Q 035585           49 IVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      .++++|.+|+|||||+..+...
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5889999999999999998764

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.63  E-value=0.0013  Score=44.87  Aligned_cols=24  Identities=21%  Similarity=0.520  Sum_probs=20.7

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      -.++|+|.+|+|||||+..+....
T Consensus         6 ~~i~v~G~~~~GKssl~~~l~~~~   29 (168)
T 1z2a_A            6 IKMVVVGNGAVGKSSMIQRYCKGI   29 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEEEECcCCCCHHHHHHHHHcCC
Confidence            458899999999999999988643

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=96.63  E-value=0.0087  Score=46.47  Aligned_cols=30  Identities=30%  Similarity=0.361  Sum_probs=25.5

Q ss_pred             cCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           44 DVNVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        44 ~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      ..+...++|+|++|+|||||+..+...+..
T Consensus        53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~   82 (341)
T 2p67_A           53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIR   82 (341)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            456678999999999999999999877654

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=96.63  E-value=0.0013  Score=45.75  Aligned_cols=23  Identities=26%  Similarity=0.348  Sum_probs=20.5

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      ..++|+|.+|+|||||+..+...
T Consensus         5 ~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            5 MKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46889999999999999999864

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=96.62  E-value=0.00076  Score=48.17  Aligned_cols=27  Identities=19%  Similarity=0.185  Sum_probs=22.1

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      .+...++|+|++|+|||||++.+....
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~   50 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTNQK   50 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            445679999999999999999887544

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=96.61  E-value=0.0056  Score=51.00  Aligned_cols=41  Identities=24%  Similarity=0.099  Sum_probs=29.9

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcC
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPD   90 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (183)
                      .++++|+|++|+||||++..+...+....   ..+.+.+++...
T Consensus       204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g---~~Vl~~ApT~~A  244 (574)
T 3e1s_A          204 HRLVVLTGGPGTGKSTTTKAVADLAESLG---LEVGLCAPTGKA  244 (574)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEEESSHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHhcC---CeEEEecCcHHH
Confidence            47899999999999999999998877642   223344454433

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.61  E-value=0.0016  Score=51.20  Aligned_cols=25  Identities=28%  Similarity=0.359  Sum_probs=21.2

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      .++++|+|++|+|||||...++..+
T Consensus        23 ~g~~~i~G~NGaGKTTll~ai~~al   47 (365)
T 3qf7_A           23 SGITVVEGPNGAGKSSLFEAISFAL   47 (365)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            3588899999999999999987543

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=96.60  E-value=0.0011  Score=50.75  Aligned_cols=22  Identities=32%  Similarity=0.513  Sum_probs=18.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHHhH
Q 035585           49 IVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      .++|+|++|+|||||++.++..
T Consensus        20 ~I~lvG~nG~GKSTLl~~L~g~   41 (301)
T 2qnr_A           20 TLMVVGESGLGKSTLINSLFLT   41 (301)
T ss_dssp             EEEEEEETTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4599999999999999998753

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.60  E-value=0.0013  Score=47.51  Aligned_cols=24  Identities=25%  Similarity=0.342  Sum_probs=21.3

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      .+++|+|++|+||||+++.+...+
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc
Confidence            478999999999999999987754

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.60  E-value=0.0014  Score=53.37  Aligned_cols=26  Identities=23%  Similarity=0.313  Sum_probs=23.3

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      .+++|+|++|+|||||++.+...+..
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl~~p   55 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTALIP   55 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred             ceEEEECCCCCcHHHHHHHHhcCCCC
Confidence            79999999999999999999876654

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.59  E-value=0.0013  Score=52.90  Aligned_cols=29  Identities=24%  Similarity=0.410  Sum_probs=24.9

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      .+...++|.|++|+|||||++.++.....
T Consensus       155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~  183 (438)
T 2dpy_A          155 GRGQRMGLFAGSGVGKSVLLGMMARYTRA  183 (438)
T ss_dssp             BTTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence            45579999999999999999999887643

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.58  E-value=0.0017  Score=44.79  Aligned_cols=25  Identities=28%  Similarity=0.376  Sum_probs=21.7

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      +...|+|+|.+|+|||||+..+...
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4567999999999999999998753

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.58  E-value=0.0018  Score=46.53  Aligned_cols=27  Identities=19%  Similarity=0.199  Sum_probs=22.8

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      .+...++|+|++|+|||||+..+....
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            345679999999999999999988654

>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A

Probab=96.58  E-value=0.0053  Score=53.09  Aligned_cols=62  Identities=15%  Similarity=0.181  Sum_probs=40.0

Q ss_pred             HHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHH
Q 035585           33 STLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIA   99 (183)
Q Consensus        33 ~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   99 (183)
                      .+...+...+.   .+.++|+|++|+|||+++..+...+...  ....+.+.++++.+...+...+.
T Consensus       360 ~Q~~Av~~~l~---~~~~lI~GppGTGKT~ti~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~  421 (800)
T 2wjy_A          360 SQVYAVKTVLQ---RPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIH  421 (800)
T ss_dssp             HHHHHHHHHHT---SSEEEEECCTTSCHHHHHHHHHHHHHTT--CSSCEEEEESSHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcc---CCeEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHH
Confidence            33444444442   3688999999999999988887776542  22345566666666665555543

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.58  E-value=0.0012  Score=52.95  Aligned_cols=21  Identities=29%  Similarity=0.482  Sum_probs=19.6

Q ss_pred             EEEEeCCCCcHHHHHHHHHhH
Q 035585           50 VGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      ++|+|++|+|||||++.++..
T Consensus        45 vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           45 ILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             EEEECSTTSSSHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhCc
Confidence            999999999999999999764

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.57  E-value=0.0034  Score=43.90  Aligned_cols=27  Identities=26%  Similarity=0.423  Sum_probs=22.5

Q ss_pred             cCCccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           44 DVNVNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        44 ~~~~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      +.+.-.++|+|.+|+|||||+..+...
T Consensus        13 ~~~~~~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           13 NHQEHKVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcC
Confidence            344567899999999999999998853

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=96.56  E-value=0.0015  Score=50.72  Aligned_cols=24  Identities=25%  Similarity=0.373  Sum_probs=20.8

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFAR   69 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~   69 (183)
                      ..++.+|+|++|+|||+++.+++.
T Consensus        22 ~~~~~~i~G~NGsGKS~lleAi~~   45 (339)
T 3qkt_A           22 KEGINLIIGQNGSGKSSLLDAILV   45 (339)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            347889999999999999998754

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.56  E-value=0.0016  Score=47.83  Aligned_cols=24  Identities=21%  Similarity=0.196  Sum_probs=21.3

Q ss_pred             EEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           49 IVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      -++|.|++|+||||+++.+...+.
T Consensus        10 ~~~~~G~pGsGKsT~a~~L~~~~g   33 (230)
T 3gmt_A           10 RLILLGAPGAGKGTQANFIKEKFG   33 (230)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             ceeeECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999988764

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.55  E-value=0.0016  Score=44.28  Aligned_cols=24  Identities=38%  Similarity=0.610  Sum_probs=20.3

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      -.++|+|.+|+|||||+..+....
T Consensus         4 ~~i~v~G~~~~GKSsli~~l~~~~   27 (167)
T 1kao_A            4 YKVVVLGSGGVGKSALTVQFVTGT   27 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCC
Confidence            358999999999999999987543

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.55  E-value=0.002  Score=45.30  Aligned_cols=26  Identities=12%  Similarity=0.376  Sum_probs=22.3

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      .+...++|+|.+|+|||||+..+...
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34567999999999999999999765

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=96.54  E-value=0.0033  Score=46.00  Aligned_cols=39  Identities=23%  Similarity=0.451  Sum_probs=30.7

Q ss_pred             EEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcC
Q 035585           50 VGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPD   90 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (183)
                      |+|.|.+|+||||++..++..+...  -..++.+++....+
T Consensus         3 I~vs~kGGvGKTt~a~~LA~~la~~--g~~VlliD~D~~~~   41 (254)
T 3kjh_A            3 LAVAGKGGVGKTTVAAGLIKIMASD--YDKIYAVDGDPDSC   41 (254)
T ss_dssp             EEEECSSSHHHHHHHHHHHHHHTTT--CSCEEEEEECTTSC
T ss_pred             EEEecCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCCcC
Confidence            4568999999999999999988865  34577777765543

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=96.53  E-value=0.0019  Score=53.18  Aligned_cols=28  Identities=21%  Similarity=0.317  Sum_probs=24.4

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      .+.+|+++|.+|+||||+++.+...+.-
T Consensus        34 ~~~lIvlvGlpGSGKSTia~~La~~L~~   61 (520)
T 2axn_A           34 SPTVIVMVGLPARGKTYISKKLTRYLNW   61 (520)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            4568999999999999999999987754

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.53  E-value=0.0016  Score=44.47  Aligned_cols=23  Identities=35%  Similarity=0.511  Sum_probs=20.2

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      --++|+|.+|+|||||+..+...
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            7 FKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            45889999999999999998854

>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*

Probab=96.52  E-value=0.0069  Score=49.01  Aligned_cols=91  Identities=21%  Similarity=0.210  Sum_probs=53.0

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcc--cceEEEEec-CCcCHHHHHHHHHHHhC-----------CCchhHH-
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLF--DQVVFSEVS-QTPDIKKIHGEIAEKLG-----------LEFSEEA-  110 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~i~~~l~-----------~~~~~~~-  110 (183)
                      +.+-++|.|.+|+|||+|+.+++........-  ..++|+-+. ......++...+...-.           ...+... 
T Consensus       151 rGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~  230 (469)
T 2c61_A          151 RGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERI  230 (469)
T ss_dssp             TTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHH
Confidence            34567788999999999999988776532111  234555444 33456666666654311           0111111 


Q ss_pred             -HHHHHHHHHHHHh--cCCeEEEEEeCCC
Q 035585          111 -ESRRASRLYERLK--KEKMILVILDNIW  136 (183)
Q Consensus       111 -~~~~~~~~~~~~~--~~~~~llvlD~~~  136 (183)
                       .......+-++++  +++.++|++|++.
T Consensus       231 ~~~~~a~tiAEyfrdd~G~dVLl~~Dslt  259 (469)
T 2c61_A          231 VTPRMALTAAEYLAYEHGMHVLVILTDIT  259 (469)
T ss_dssp             HHHHHHHHHHHHHHHHHCCEEEEEEECHH
T ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEEeCHH
Confidence             1111234445655  5899999999864

>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=96.52  E-value=0.0065  Score=52.59  Aligned_cols=64  Identities=13%  Similarity=0.179  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHH
Q 035585           32 LSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAE  100 (183)
Q Consensus        32 ~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  100 (183)
                      ..+.+.+...+.   .+.++|.|++|+|||+++..+...+...  ....+.+...++.+...+...+.+
T Consensus       363 ~~Q~~Av~~~l~---~~~~lI~GppGTGKT~~i~~~i~~l~~~--~~~~ILv~a~tn~A~d~l~~rL~~  426 (802)
T 2xzl_A          363 SSQSNAVSHVLQ---RPLSLIQGPPGTGKTVTSATIVYHLSKI--HKDRILVCAPSNVAVDHLAAKLRD  426 (802)
T ss_dssp             HHHHHHHHHHTT---CSEEEEECSTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc---CCCEEEECCCCCCHHHHHHHHHHHHHhC--CCCeEEEEcCcHHHHHHHHHHHHh
Confidence            334444444442   3578999999999998888877665432  123455666666666666666544

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.51  E-value=0.0017  Score=44.27  Aligned_cols=23  Identities=22%  Similarity=0.458  Sum_probs=20.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHHhHH
Q 035585           49 IVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      -++|+|.+|+|||||+..+....
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999987543

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.51  E-value=0.0018  Score=44.21  Aligned_cols=23  Identities=26%  Similarity=0.478  Sum_probs=20.0

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      --++|+|.+|+|||||+..+...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            45889999999999999998754

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.51  E-value=0.0022  Score=43.51  Aligned_cols=24  Identities=33%  Similarity=0.569  Sum_probs=20.7

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      -.++|+|.+|+|||||+..+....
T Consensus         5 ~~i~v~G~~~~GKssl~~~l~~~~   28 (168)
T 1u8z_A            5 HKVIMVGSGGVGKSALTLQFMYDE   28 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCc
Confidence            468999999999999999987643

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.50  E-value=0.0017  Score=44.29  Aligned_cols=24  Identities=25%  Similarity=0.472  Sum_probs=20.7

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      --++|+|.+|+|||||+..+....
T Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            7 LKVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            358899999999999999988654

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.50  E-value=0.0016  Score=44.48  Aligned_cols=23  Identities=43%  Similarity=0.842  Sum_probs=20.0

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      -.++|+|.+|+|||||+..+...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            4 YRVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            35889999999999999998863

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=96.50  E-value=0.0017  Score=50.83  Aligned_cols=26  Identities=23%  Similarity=0.353  Sum_probs=22.6

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ...++|+|++|+|||||++.+.....
T Consensus       215 G~~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          215 GRISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             CCEEEEECCCCccHHHHHHHHhcccc
Confidence            36899999999999999999987654

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=96.50  E-value=0.0018  Score=44.10  Aligned_cols=23  Identities=35%  Similarity=0.629  Sum_probs=20.0

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      --++|+|.+|+|||||+..+...
T Consensus         4 ~ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            4 YKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            35889999999999999998864

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.50  E-value=0.002  Score=44.21  Aligned_cols=25  Identities=36%  Similarity=0.488  Sum_probs=20.7

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      .--++|+|.+|+|||||+..+....
T Consensus         4 ~~ki~i~G~~~vGKSsl~~~l~~~~   28 (175)
T 2nzj_A            4 LYRVVLLGDPGVGKTSLASLFAGKQ   28 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCC-
T ss_pred             EEEEEEECCCCccHHHHHHHHhcCC
Confidence            3468999999999999999987643

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=96.50  E-value=0.0019  Score=43.92  Aligned_cols=22  Identities=23%  Similarity=0.385  Sum_probs=19.3

Q ss_pred             EEEEeCCCCcHHHHHHHHHhHH
Q 035585           50 VGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      ++|+|.+|+|||+|+..+....
T Consensus         3 i~~~G~~~~GKssl~~~l~~~~   24 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKLGE   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            7899999999999999987543

>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=96.49  E-value=0.0057  Score=47.16  Aligned_cols=38  Identities=24%  Similarity=0.267  Sum_probs=28.2

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ   87 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~   87 (183)
                      .++...|.+|+||||++..++..+...  -..+..+++..
T Consensus        15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~--G~rVLlvD~D~   52 (324)
T 3zq6_A           15 TFVFIGGKGGVGKTTISAATALWMARS--GKKTLVISTDP   52 (324)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEECCS
T ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHHC--CCcEEEEeCCC
Confidence            566777999999999999999888764  23455555543

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=96.49  E-value=0.0039  Score=51.89  Aligned_cols=29  Identities=10%  Similarity=0.119  Sum_probs=25.1

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      ....+|.|.|.+|+||||+++.+...+..
T Consensus       394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~  422 (573)
T 1m8p_A          394 TQGFTIFLTGYMNSGKDAIARALQVTLNQ  422 (573)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             ccceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence            34567999999999999999999988774

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=96.49  E-value=0.0018  Score=44.68  Aligned_cols=23  Identities=30%  Similarity=0.590  Sum_probs=20.2

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      --++|+|.+|+|||||+..+...
T Consensus         8 ~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            8 FKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            45899999999999999998754

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.49  E-value=0.0008  Score=50.22  Aligned_cols=28  Identities=18%  Similarity=0.300  Sum_probs=23.6

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .+...|+|.|..|+||||+++.+...+.
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~   49 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQLCE   49 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            3557899999999999999999888763

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.48  E-value=0.0024  Score=44.26  Aligned_cols=25  Identities=24%  Similarity=0.341  Sum_probs=21.3

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFAR   69 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~   69 (183)
                      .+...++|+|++|+|||||+..+..
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            4556799999999999999988863

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=96.48  E-value=0.0018  Score=44.72  Aligned_cols=26  Identities=31%  Similarity=0.563  Sum_probs=21.6

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +...++|+|.+|+|||||+..+....
T Consensus         7 ~~~~i~v~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A            7 NILKVIILGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence            34568999999999999999987643

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.47  E-value=0.0017  Score=44.25  Aligned_cols=21  Identities=33%  Similarity=0.559  Sum_probs=18.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHHh
Q 035585           49 IVGVYGMGGIGKTTLVKEFAR   69 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~   69 (183)
                      -++|+|.+|+|||||+..+..
T Consensus         4 ki~~vG~~~~GKSsli~~l~~   24 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGG   24 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            478999999999999998864

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=96.46  E-value=0.002  Score=45.03  Aligned_cols=23  Identities=35%  Similarity=0.443  Sum_probs=20.3

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      --++|+|.+|+|||||+..+...
T Consensus         8 ~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            8 CKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            45889999999999999998864

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=96.45  E-value=0.0026  Score=43.86  Aligned_cols=25  Identities=32%  Similarity=0.582  Sum_probs=21.4

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      +...++|+|.+|+|||||+..+...
T Consensus         8 ~~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            8 ETHKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            3456899999999999999998865

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=96.45  E-value=0.002  Score=44.47  Aligned_cols=24  Identities=38%  Similarity=0.488  Sum_probs=20.7

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      --++|+|.+|+|||+|+..+....
T Consensus         7 ~ki~v~G~~~~GKssl~~~l~~~~   30 (178)
T 2hxs_A            7 LKIVVLGDGASGKTSLTTCFAQET   30 (178)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHGGG
T ss_pred             EEEEEECcCCCCHHHHHHHHHhCc
Confidence            458899999999999999988543

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.45  E-value=0.0019  Score=44.18  Aligned_cols=21  Identities=38%  Similarity=0.578  Sum_probs=18.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHHh
Q 035585           49 IVGVYGMGGIGKTTLVKEFAR   69 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~   69 (183)
                      -++|+|.+|+|||||+..+..
T Consensus         4 ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            478999999999999999864

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.45  E-value=0.002  Score=43.93  Aligned_cols=23  Identities=26%  Similarity=0.450  Sum_probs=20.0

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      --++|+|.+|+|||||+..+...
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            7 FKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            35889999999999999998853

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=96.44  E-value=0.0054  Score=43.54  Aligned_cols=43  Identities=21%  Similarity=0.275  Sum_probs=32.1

Q ss_pred             cEEEEE-eCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHH
Q 035585           48 NIVGVY-GMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIK   92 (183)
Q Consensus        48 ~~v~i~-G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (183)
                      +++.|+ +.+|+||||++..++..+...  -..+..+++....+..
T Consensus         2 ~vi~v~s~kgG~GKTt~a~~la~~la~~--g~~vlliD~D~~~~~~   45 (206)
T 4dzz_A            2 KVISFLNPKGGSGKTTAVINIATALSRS--GYNIAVVDTDPQMSLT   45 (206)
T ss_dssp             EEEEECCSSTTSSHHHHHHHHHHHHHHT--TCCEEEEECCTTCHHH
T ss_pred             eEEEEEeCCCCccHHHHHHHHHHHHHHC--CCeEEEEECCCCCCHH
Confidence            466777 689999999999999988764  3457777876554433

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=96.44  E-value=0.002  Score=45.13  Aligned_cols=24  Identities=29%  Similarity=0.523  Sum_probs=20.7

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      -.|+++|.+|+|||||+..+....
T Consensus        22 ~ki~vvG~~~~GKSsli~~l~~~~   45 (190)
T 3con_A           22 YKLVVVGAGGVGKSALTIQLIQNH   45 (190)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            468899999999999999998653

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=96.44  E-value=0.0057  Score=50.65  Aligned_cols=46  Identities=15%  Similarity=0.140  Sum_probs=33.7

Q ss_pred             cchHHHHHHHHHHh--ccCCccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           29 KSRLSTLKSIQDAL--TDVNVNIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        29 ~gR~~~l~~l~~~l--~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      +.|.+....+.+..  ......++.++|.+|+||||+++.+...+...
T Consensus       352 ~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~~  399 (546)
T 2gks_A          352 FTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQAR  399 (546)
T ss_dssp             TSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             ccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhhc
Confidence            34555556666655  23345689999999999999999999887653

>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*

Probab=96.43  E-value=0.0086  Score=46.81  Aligned_cols=39  Identities=28%  Similarity=0.285  Sum_probs=28.4

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHh--hhhcccceEEEEe
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQAS--EEKLFDQVVFSEV   85 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~--~~~~~~~~~~~~~   85 (183)
                      ....++...|.+|+||||++..++..+.  ..  -..+..+++
T Consensus        16 ~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~--G~rVLLvD~   56 (354)
T 2woj_A           16 TTHKWIFVGGKGGVGKTTSSCSIAIQMALSQP--NKQFLLIST   56 (354)
T ss_dssp             SSCCEEEEEESTTSSHHHHHHHHHHHHHHHCT--TSCEEEEEC
T ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcC--CCeEEEEEC
Confidence            4456777789999999999999998887  43  223445444

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.43  E-value=0.0025  Score=44.56  Aligned_cols=25  Identities=20%  Similarity=0.377  Sum_probs=21.5

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      ...++|+|.+|+|||||+..+....
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           23 KGEVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             TCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCc
Confidence            3578999999999999999988653

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=96.41  E-value=0.0022  Score=45.20  Aligned_cols=25  Identities=24%  Similarity=0.344  Sum_probs=20.5

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      +...++|+|.+|+|||||+..+...
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC
Confidence            3457899999999999999998863

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=96.40  E-value=0.0019  Score=45.07  Aligned_cols=22  Identities=23%  Similarity=0.410  Sum_probs=19.6

Q ss_pred             EEEEEeCCCCcHHHHHHHHHhH
Q 035585           49 IVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      -++|+|.+|+|||||+..+...
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            4789999999999999998764

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.40  E-value=0.0023  Score=44.08  Aligned_cols=23  Identities=26%  Similarity=0.397  Sum_probs=20.0

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      --++|+|.+|+|||||+..+...
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            35889999999999999998753

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.40  E-value=0.0021  Score=45.06  Aligned_cols=23  Identities=30%  Similarity=0.414  Sum_probs=20.0

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      --++|+|.+|+|||||+..+...
T Consensus        21 ~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           21 LKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999887764

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=96.39  E-value=0.0022  Score=44.15  Aligned_cols=25  Identities=24%  Similarity=0.434  Sum_probs=21.3

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      .-.++|+|.+|+|||||+..+....
T Consensus        15 ~~~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           15 IFKYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCC
Confidence            3468999999999999999988644

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=96.39  E-value=0.0035  Score=44.47  Aligned_cols=25  Identities=24%  Similarity=0.343  Sum_probs=21.0

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFAR   69 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~   69 (183)
                      .+..-++|+|++|+|||||+..+..
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhc
Confidence            3445689999999999999999864

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.38  E-value=0.0023  Score=44.93  Aligned_cols=24  Identities=25%  Similarity=0.221  Sum_probs=21.3

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      ..-+++.|++|+||||++..+..+
T Consensus        16 G~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           16 KMGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc
Confidence            467899999999999999998874

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=96.38  E-value=0.0023  Score=44.71  Aligned_cols=23  Identities=22%  Similarity=0.378  Sum_probs=20.3

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      --|+|+|.+|+|||||+..+...
T Consensus        12 ~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           12 IKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999998864

>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*

Probab=96.38  E-value=0.01  Score=47.82  Aligned_cols=91  Identities=21%  Similarity=0.187  Sum_probs=51.9

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhh-hc-ccceEEEEec-CCcCHHHHHHHHHHHh-----------CCCchhHH-
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEE-KL-FDQVVFSEVS-QTPDIKKIHGEIAEKL-----------GLEFSEEA-  110 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~-~~-~~~~~~~~~~-~~~~~~~~~~~i~~~l-----------~~~~~~~~-  110 (183)
                      +.+-++|.|.+|+|||+|+.++++..... +. -..++|+-+. ......++...+...-           ....+... 
T Consensus       150 rGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~  229 (465)
T 3vr4_D          150 RGQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERI  229 (465)
T ss_dssp             TTCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHH
T ss_pred             cCCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHH
Confidence            33557888999999999999887765431 01 1134555444 3355566666664431           00111111 


Q ss_pred             -HHHHHHHHHHHHh--cCCeEEEEEeCCC
Q 035585          111 -ESRRASRLYERLK--KEKMILVILDNIW  136 (183)
Q Consensus       111 -~~~~~~~~~~~~~--~~~~~llvlD~~~  136 (183)
                       .......+-++++  +++.+||++|++.
T Consensus       230 ~a~~~a~tiAEyfrd~~G~~VLl~~DslT  258 (465)
T 3vr4_D          230 ATPRMALTAAEYLAYEKGMHVLVIMTDMT  258 (465)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence             1111234556666  3788999999975

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=96.37  E-value=0.0018  Score=49.47  Aligned_cols=25  Identities=24%  Similarity=0.488  Sum_probs=22.1

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      +...++|+|++|+|||||+..+...
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCC
Confidence            4468999999999999999999865

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=96.36  E-value=0.0024  Score=44.39  Aligned_cols=24  Identities=29%  Similarity=0.427  Sum_probs=20.7

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      --++|+|.+|+|||||+..+....
T Consensus        11 ~ki~v~G~~~~GKSsli~~l~~~~   34 (186)
T 2bme_A           11 FKFLVIGNAGTGKSCLLHQFIEKK   34 (186)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            468999999999999999987643

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=96.35  E-value=0.0022  Score=45.36  Aligned_cols=21  Identities=19%  Similarity=0.202  Sum_probs=19.1

Q ss_pred             EEEEeCCCCcHHHHHHHHHhH
Q 035585           50 VGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      ++|+|.+|+|||++|.++...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            689999999999999998865

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=96.35  E-value=0.0023  Score=44.94  Aligned_cols=24  Identities=38%  Similarity=0.595  Sum_probs=20.7

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      --|+|+|.+|+|||||+..+....
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~~   49 (193)
T 2oil_A           26 FKVVLIGESGVGKTNLLSRFTRNE   49 (193)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            468999999999999999987643

>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*

Probab=96.35  E-value=0.011  Score=47.72  Aligned_cols=91  Identities=21%  Similarity=0.232  Sum_probs=51.7

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhh--------hccc-ceEEEEecC-CcCHHHHHHHHHHHh-----------CC
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEE--------KLFD-QVVFSEVSQ-TPDIKKIHGEIAEKL-----------GL  104 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~--------~~~~-~~~~~~~~~-~~~~~~~~~~i~~~l-----------~~  104 (183)
                      +.+-++|.|.+|+|||+|+.++++.....        +.-+ .++|+-+.. .....++...+...-           ..
T Consensus       146 rGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d  225 (464)
T 3gqb_B          146 RGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKAD  225 (464)
T ss_dssp             TTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETT
T ss_pred             cCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCC
Confidence            34567888999999999999887765431        1111 355554543 345566666654321           00


Q ss_pred             CchhH--HHHHHHHHHHHHHh--cCCeEEEEEeCCC
Q 035585          105 EFSEE--AESRRASRLYERLK--KEKMILVILDNIW  136 (183)
Q Consensus       105 ~~~~~--~~~~~~~~~~~~~~--~~~~~llvlD~~~  136 (183)
                      ..+..  ........+-++++  +++.++|++|++.
T Consensus       226 ~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT  261 (464)
T 3gqb_B          226 DPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMT  261 (464)
T ss_dssp             SCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence            11111  11112234556666  3788999999975

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=96.35  E-value=0.0024  Score=50.06  Aligned_cols=23  Identities=35%  Similarity=0.624  Sum_probs=20.8

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFAR   69 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~   69 (183)
                      ..+.+|+|++|+||||++..++.
T Consensus        26 ~g~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           26 EGVTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCChhHHHHHHHH
Confidence            45899999999999999999975

>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}

Probab=96.35  E-value=0.013  Score=47.77  Aligned_cols=89  Identities=13%  Similarity=0.100  Sum_probs=50.1

Q ss_pred             CCccEEEEEeCCCCcHHHHH-HHHHhHHhhhhcccceEEEEecCC-cCHHHHHHHHHHHhC----------CCch-hHHH
Q 035585           45 VNVNIVGVYGMGGIGKTTLV-KEFARQASEEKLFDQVVFSEVSQT-PDIKKIHGEIAEKLG----------LEFS-EEAE  111 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~l~----------~~~~-~~~~  111 (183)
                      .+.+-++|.|++|+|||+|+ ..+++... .  -..++|+-+... ....++...+...-.          ...+ ....
T Consensus       173 grGQR~~I~g~~g~GKT~Lal~~I~~~~~-~--dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~  249 (515)
T 2r9v_A          173 GRGQRELIIGDRQTGKTAIAIDTIINQKG-Q--GVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQY  249 (515)
T ss_dssp             ETTCBEEEEEETTSSHHHHHHHHHHTTTT-T--TEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHH
T ss_pred             ccCCEEEEEcCCCCCccHHHHHHHHHhhc-C--CcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHH
Confidence            34467899999999999995 46666542 1  123456555544 455666666654210          0111 1111


Q ss_pred             --HHHHHHHHHHHh-cCCeEEEEEeCCC
Q 035585          112 --SRRASRLYERLK-KEKMILVILDNIW  136 (183)
Q Consensus       112 --~~~~~~~~~~~~-~~~~~llvlD~~~  136 (183)
                        ......+-++++ +++.+||++|++.
T Consensus       250 ~a~~~a~tiAEyfrd~G~dVLli~DslT  277 (515)
T 2r9v_A          250 IAPYAGCAMGEYFAYSGRDALVVYDDLS  277 (515)
T ss_dssp             HHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred             HHHHHHHHHHHHHHHcCCcEEEEeccHH
Confidence              111223344554 3789999999875

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.34  E-value=0.0032  Score=43.05  Aligned_cols=23  Identities=26%  Similarity=0.421  Sum_probs=20.2

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      ..++|+|.+|+|||||+..+...
T Consensus         8 ~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            8 MRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            56899999999999999998753

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=96.34  E-value=0.0026  Score=44.99  Aligned_cols=22  Identities=41%  Similarity=0.533  Sum_probs=19.5

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHh
Q 035585           48 NIVGVYGMGGIGKTTLVKEFAR   69 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~   69 (183)
                      --++|+|.+|+|||+|+..+..
T Consensus         7 ~kv~lvG~~~vGKSsL~~~~~~   28 (192)
T 2cjw_A            7 YRVVLIGEQGVGKSTLANIFAG   28 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            4589999999999999999874

>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}

Probab=96.33  E-value=0.0087  Score=46.24  Aligned_cols=40  Identities=30%  Similarity=0.334  Sum_probs=29.1

Q ss_pred             cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEe
Q 035585           44 DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEV   85 (183)
Q Consensus        44 ~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~   85 (183)
                      +....++...|.+|+||||++..++..+...  -..+..+++
T Consensus        16 ~~~~~i~v~sgkGGvGKTTva~~LA~~lA~~--G~rVllvD~   55 (329)
T 2woo_A           16 QTSLKWIFVGGKGGVGKTTTSCSLAIQMSKV--RSSVLLIST   55 (329)
T ss_dssp             CTTCCEEEEECSSSSSHHHHHHHHHHHHHTS--SSCEEEEEC
T ss_pred             CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHC--CCeEEEEEC
Confidence            3445677788999999999999999888754  223455443

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=96.33  E-value=0.0025  Score=44.36  Aligned_cols=24  Identities=25%  Similarity=0.433  Sum_probs=20.5

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      --++|+|.+|+|||||+..+....
T Consensus         5 ~ki~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            5 YKLVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCC
Confidence            358899999999999999998543

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=96.32  E-value=0.0025  Score=44.74  Aligned_cols=24  Identities=25%  Similarity=0.445  Sum_probs=20.6

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      --|+|+|.+|+|||+|+..+....
T Consensus        22 ~ki~vvG~~~vGKTsLi~~l~~~~   45 (187)
T 3c5c_A           22 VNLAILGRRGAGKSALTVKFLTKR   45 (187)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEEECCCCCcHHHHHHHHHhCC
Confidence            468999999999999999887643

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.31  E-value=0.0029  Score=44.48  Aligned_cols=24  Identities=21%  Similarity=0.367  Sum_probs=20.7

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      --|+|+|.+|+|||||+..+....
T Consensus        24 ~ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           24 FKLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eEEEEECCCCcCHHHHHHHHhcCC
Confidence            358999999999999999988654

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=96.31  E-value=0.0026  Score=44.10  Aligned_cols=24  Identities=33%  Similarity=0.594  Sum_probs=20.8

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      ...|+|+|.+|+|||||+..+...
T Consensus        18 ~~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           18 LHKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhC
Confidence            356899999999999999998854

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=96.31  E-value=0.0026  Score=44.15  Aligned_cols=24  Identities=33%  Similarity=0.562  Sum_probs=20.8

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      .--++|+|.+|+|||||+..+...
T Consensus        18 ~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           18 TYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            346899999999999999998864

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=96.31  E-value=0.0026  Score=43.96  Aligned_cols=23  Identities=30%  Similarity=0.482  Sum_probs=20.2

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      --++|+|.+|+|||||+..+...
T Consensus        13 ~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           13 AKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            45899999999999999998764

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=96.30  E-value=0.0041  Score=43.38  Aligned_cols=26  Identities=31%  Similarity=0.415  Sum_probs=21.8

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      ....-++|+|.+|+|||||+..+...
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcC
Confidence            34457899999999999999998764

>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}

Probab=96.30  E-value=0.0082  Score=47.17  Aligned_cols=57  Identities=16%  Similarity=0.248  Sum_probs=40.2

Q ss_pred             ccchHHHHHHHHHHhc------------cCCccEEEEEe-CCCCcHHHHHHHHHhHHhhhhcccceEEEEec
Q 035585           28 FKSRLSTLKSIQDALT------------DVNVNIVGVYG-MGGIGKTTLVKEFARQASEEKLFDQVVFSEVS   86 (183)
Q Consensus        28 ~~gR~~~l~~l~~~l~------------~~~~~~v~i~G-~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~   86 (183)
                      +..-+..+..+.+...            +.+.++++|+| .+|+||||++..++..+...  -..++.+++.
T Consensus       112 yq~~~~i~~ei~~~~~e~~~~~~~~~~~~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~--g~rVlliD~D  181 (373)
T 3fkq_A          112 YQRVDVIFKQILGVYSDMAANVATISGENDKSSVVIFTSPCGGVGTSTVAAACAIAHANM--GKKVFYLNIE  181 (373)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHTCCCCCCTTSCEEEEEECSSTTSSHHHHHHHHHHHHHHH--TCCEEEEECC
T ss_pred             cCCHHHHHHHHHHHHhhcccccccccccCCCceEEEEECCCCCChHHHHHHHHHHHHHhC--CCCEEEEECC
Confidence            3344555566655431            24567888885 99999999999999888765  3457788865

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=96.29  E-value=0.0027  Score=44.05  Aligned_cols=23  Identities=30%  Similarity=0.433  Sum_probs=19.9

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      --++|+|.+|+|||||+..+...
T Consensus         6 ~~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            6 IKCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            35889999999999999998754

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.29  E-value=0.0018  Score=49.84  Aligned_cols=23  Identities=17%  Similarity=0.430  Sum_probs=20.7

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFAR   69 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~   69 (183)
                      ..+.+|+|++|+|||+|+..+..
T Consensus        24 ~g~~~i~G~NGsGKS~ll~ai~~   46 (322)
T 1e69_A           24 DRVTAIVGPNGSGKSNIIDAIKW   46 (322)
T ss_dssp             SSEEEEECCTTTCSTHHHHHHHH
T ss_pred             CCcEEEECCCCCcHHHHHHHHHH
Confidence            35899999999999999999984

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=96.29  E-value=0.0026  Score=44.64  Aligned_cols=24  Identities=17%  Similarity=0.362  Sum_probs=20.9

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      .--|+|+|.+|+|||||+..+...
T Consensus         7 ~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            7 SYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            345899999999999999998865

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.29  E-value=0.0027  Score=43.82  Aligned_cols=24  Identities=38%  Similarity=0.461  Sum_probs=20.6

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      -.++|+|.+|+|||||+..+....
T Consensus        11 ~~i~v~G~~~~GKssli~~l~~~~   34 (180)
T 2g6b_A           11 FKVMLVGDSGVGKTCLLVRFKDGA   34 (180)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhCC
Confidence            458999999999999999987643

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=96.29  E-value=0.0032  Score=51.07  Aligned_cols=28  Identities=21%  Similarity=0.286  Sum_probs=24.2

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      ....|+++|.+|+||||+++.+...+..
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l~~   65 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYLNF   65 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            4468999999999999999999987764

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=96.28  E-value=0.0028  Score=44.58  Aligned_cols=24  Identities=29%  Similarity=0.495  Sum_probs=20.8

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      --|+|+|.+|+|||||+..+....
T Consensus        24 ~ki~vvG~~~~GKSsli~~l~~~~   47 (192)
T 2fg5_A           24 LKVCLLGDTGVGKSSIVCRFVQDH   47 (192)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHCC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            468999999999999999987643

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=96.27  E-value=0.0038  Score=45.42  Aligned_cols=27  Identities=19%  Similarity=0.262  Sum_probs=24.2

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      ...|.+.|+.|+||||+++.+...+..
T Consensus         5 g~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            5 GKLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            468899999999999999999998765

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=96.26  E-value=0.002  Score=44.58  Aligned_cols=23  Identities=30%  Similarity=0.482  Sum_probs=20.2

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      --++|+|.+|+|||+|+..+...
T Consensus         8 ~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            8 LRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEEECCGGGCHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            35889999999999999998764

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=96.26  E-value=0.003  Score=43.76  Aligned_cols=24  Identities=21%  Similarity=0.497  Sum_probs=20.6

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      ...++|+|.+|+|||||+..+...
T Consensus         6 ~~ki~~~G~~~~GKSsli~~l~~~   29 (181)
T 3t5g_A            6 SRKIAILGYRSVGKSSLTIQFVEG   29 (181)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcC
Confidence            356899999999999999998843

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=96.26  E-value=0.0025  Score=43.94  Aligned_cols=24  Identities=29%  Similarity=0.512  Sum_probs=20.5

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      ..-++|+|.+|+|||||+..+...
T Consensus         9 ~~~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B            9 LFKLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHCSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcC
Confidence            346899999999999999998754

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=96.26  E-value=0.0029  Score=43.78  Aligned_cols=24  Identities=25%  Similarity=0.369  Sum_probs=20.4

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      .--++|+|.+|+|||||+..+...
T Consensus         8 ~~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            8 FIKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            346889999999999999988754

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.26  E-value=0.0029  Score=45.14  Aligned_cols=25  Identities=32%  Similarity=0.551  Sum_probs=21.1

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      .--++|+|.+|+|||||+..+....
T Consensus        26 ~~ki~lvG~~~vGKSsLi~~l~~~~   50 (201)
T 2ew1_A           26 LFKIVLIGNAGVGKTCLVRRFTQGL   50 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCC
Confidence            3468999999999999999987643

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=96.26  E-value=0.0028  Score=44.41  Aligned_cols=24  Identities=33%  Similarity=0.260  Sum_probs=19.7

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      --++|+|.+|+|||||++.+....
T Consensus        15 ~ki~vvG~~~~GKssL~~~l~~~~   38 (198)
T 3t1o_A           15 FKIVYYGPGLSGKTTNLKWIYSKV   38 (198)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred             cEEEEECCCCCCHHHHHHHHHhhc
Confidence            358999999999999997766544

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=96.25  E-value=0.0029  Score=44.80  Aligned_cols=25  Identities=32%  Similarity=0.566  Sum_probs=21.1

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      +..-|+|+|.+|+|||||+..+...
T Consensus        13 ~~~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           13 ALHKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            3456899999999999999998754

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=96.24  E-value=0.0031  Score=47.21  Aligned_cols=25  Identities=24%  Similarity=0.412  Sum_probs=21.4

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      ...++|+|.+|+|||||+..+....
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~   27 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLR   27 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCC
Confidence            3578999999999999999987643

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=96.24  E-value=0.0031  Score=46.21  Aligned_cols=27  Identities=15%  Similarity=0.131  Sum_probs=22.1

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      .+...|+|+|.+|+|||||+..+....
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~~   53 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGRK   53 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCCC
Confidence            345679999999999999999988643

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=96.24  E-value=0.003  Score=44.26  Aligned_cols=24  Identities=21%  Similarity=0.355  Sum_probs=20.7

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      --++|+|.+|+|||||+..+....
T Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~   46 (189)
T 2gf9_A           23 FKLLLIGNSSVGKTSFLFRYADDS   46 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            468999999999999999987643

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.24  E-value=0.0029  Score=44.60  Aligned_cols=25  Identities=28%  Similarity=0.590  Sum_probs=21.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      +.--++|+|.+|+|||||+..+...
T Consensus        27 ~~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           27 AEVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            3456899999999999999998764

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=96.23  E-value=0.003  Score=44.80  Aligned_cols=25  Identities=28%  Similarity=0.546  Sum_probs=21.2

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      .-.|+|+|.+|+|||||+..+....
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A            8 LLKVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCC
Confidence            3468999999999999999987643

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.22  E-value=0.0021  Score=51.51  Aligned_cols=22  Identities=32%  Similarity=0.517  Sum_probs=19.7

Q ss_pred             EEEEeCCCCcHHHHHHHHHhHH
Q 035585           50 VGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      ++|+|++|+|||||++.++...
T Consensus        34 I~lvG~sGaGKSTLln~L~g~~   55 (418)
T 2qag_C           34 LMVVGESGLGKSTLINSLFLTD   55 (418)
T ss_dssp             EEEECCTTSSHHHHHHHHTTCC
T ss_pred             EEEECCCCCcHHHHHHHHhCCC
Confidence            6999999999999999998654

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=96.22  E-value=0.0032  Score=44.65  Aligned_cols=26  Identities=27%  Similarity=0.434  Sum_probs=21.8

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +..-++|+|.+|+|||||+..+....
T Consensus        23 ~~~ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           23 RYRKVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence            34568999999999999999988643

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=96.22  E-value=0.0032  Score=45.08  Aligned_cols=24  Identities=33%  Similarity=0.401  Sum_probs=21.0

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      .--++|+|.+|+|||||+..+...
T Consensus        28 ~~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           28 KCKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            356899999999999999998864

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=96.21  E-value=0.0031  Score=50.54  Aligned_cols=24  Identities=21%  Similarity=0.419  Sum_probs=21.4

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      ..+++|+|++|+|||||+..++..
T Consensus        26 ~~~~~i~G~nG~GKstll~ai~~~   49 (430)
T 1w1w_A           26 SNFTSIIGPNGSGKSNMMDAISFV   49 (430)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            578999999999999999998753

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.21  E-value=0.0033  Score=44.24  Aligned_cols=24  Identities=42%  Similarity=0.714  Sum_probs=20.8

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      .--|+|+|.+|+|||||+..+...
T Consensus         8 ~~ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A            8 DYRVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCcHHHHHHHHHcC
Confidence            356899999999999999998763

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=96.21  E-value=0.0032  Score=44.16  Aligned_cols=24  Identities=29%  Similarity=0.282  Sum_probs=20.6

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      --|+|+|.+|+|||||+..+....
T Consensus        23 ~ki~v~G~~~~GKSsli~~l~~~~   46 (188)
T 1zd9_A           23 MELTLVGLQYSGKTTFVNVIASGQ   46 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHHcCC
Confidence            458999999999999999988543

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=96.20  E-value=0.0022  Score=45.46  Aligned_cols=22  Identities=36%  Similarity=0.567  Sum_probs=19.4

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHH
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFA   68 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~   68 (183)
                      .--++|+|.+|+|||||+..+.
T Consensus        23 ~~ki~vvG~~~vGKSsLi~~l~   44 (195)
T 3cbq_A           23 IFKVMLVGESGVGKSTLAGTFG   44 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHTC
T ss_pred             EEEEEEECCCCCCHHHHHHHHH
Confidence            3468999999999999999985

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*

Probab=96.20  E-value=0.01  Score=46.25  Aligned_cols=40  Identities=25%  Similarity=0.252  Sum_probs=28.3

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEec
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVS   86 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~   86 (183)
                      ....++...|.+|+||||++..++..+...  -..++.+++.
T Consensus        24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~--G~rVLlvD~D   63 (349)
T 3ug7_A           24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEK--GLKVVIVSTD   63 (349)
T ss_dssp             CSCEEEEEECSSSTTHHHHHHHHHHHHHHS--SCCEEEEECC
T ss_pred             CCCEEEEEeCCCCccHHHHHHHHHHHHHHC--CCeEEEEeCC
Confidence            334566677999999999999998887654  2235555543

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=96.20  E-value=0.003  Score=44.77  Aligned_cols=24  Identities=21%  Similarity=0.391  Sum_probs=20.6

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      --|+|+|.+|+|||||+..+....
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~~   32 (203)
T 1zbd_A            9 FKILIIGNSSVGKTSFLFRYADDS   32 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Confidence            458999999999999999987643

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=96.20  E-value=0.0032  Score=44.09  Aligned_cols=24  Identities=29%  Similarity=0.372  Sum_probs=20.7

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      ..-|+|+|.+|+|||||+..+...
T Consensus        20 ~~ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           20 IFKIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcC
Confidence            356899999999999999998754

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=96.19  E-value=0.0032  Score=44.22  Aligned_cols=23  Identities=26%  Similarity=0.418  Sum_probs=20.0

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      --++|+|.+|+|||||+..+...
T Consensus        22 ~ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           22 FKYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            35889999999999999998754

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=96.19  E-value=0.004  Score=52.33  Aligned_cols=28  Identities=25%  Similarity=0.230  Sum_probs=24.8

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      +..+|.|+|.+|+||||+++.+...+..
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~   78 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYLVC   78 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            5578999999999999999999988754

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=96.18  E-value=0.0074  Score=45.48  Aligned_cols=25  Identities=20%  Similarity=0.466  Sum_probs=21.8

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      ....|+|+|.+|+|||||+..+...
T Consensus        25 ~~~~i~vvG~~~~GKSSLln~l~g~   49 (299)
T 2aka_B           25 DLPQIAVVGGQSAGKSSVLENFVGR   49 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHCC
Confidence            4467999999999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	183
d2a5yb3	277	c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor	2e-13
d2fnaa2	283	c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfo	0.003

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 64.5 bits (156), Expect = 2e-13
 Identities = 21/156 (13%), Positives = 51/156 (32%), Gaps = 21/156 (13%)

Query: 31  RLSTLKSIQDALT---DVNVNIVGVYGMGGIGKTTLVKEFARQASE--EKLFDQVVFSEV 85
           R   +  +   L    D++   + ++G  G GK+ +  +   ++ +     +D +V+ + 
Sbjct: 25  REYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKD 84

Query: 86  SQTPDIKKIHGEIAEKLGLEFSEEAES----------RRASRLYERLKKEKMILVILDNI 135
           S T             L L+  ++  +               +   L      L + D++
Sbjct: 85  SGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDV 144

Query: 136 WKYLDLETVGIPFGDDHRGCKLLLTARDCNVLLNMS 171
            +   +              + L+T RD  +    S
Sbjct: 145 VQEETIRW------AQELRLRCLVTTRDVEISNAAS 174

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Length = 283

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 35.1 bits (79), Expect = 0.003
 Identities = 10/62 (16%), Positives = 25/62 (40%)

Query: 40  DALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIA 99
           + L  +   I  V G+   GK++++K    + +   ++  +   E       K    E+ 
Sbjct: 22  EKLKGLRAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQ 81

Query: 100 EK 101
           ++
Sbjct: 82  KE 83

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	183
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	99.87
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	99.33
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	99.27
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	99.26
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	99.25
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	99.24
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	99.23
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	99.22
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	99.11
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	99.11
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	99.08
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	99.02
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	98.95
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	98.92
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	98.84
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	98.84
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	98.83
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	98.75
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	98.74
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	98.67
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	98.63
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	98.52
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	98.47
d2awna2	232	Maltose transport protein MalK, N-terminal domain	98.44
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	98.42
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	98.36
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	98.36
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	98.36
d1okkd2	207	GTPase domain of the signal recognition particle r	98.35
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.32
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	98.31
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	98.31
d1g2912	240	Maltose transport protein MalK, N-terminal domain	98.27
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	98.27
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	98.27
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.26
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	98.25
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.24
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	98.22
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	98.22
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	98.21
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.2
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	98.19
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	98.18
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	98.17
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.17
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	98.13
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	98.13
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	98.13
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	98.12
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	98.12
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	98.11
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	98.1
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	98.09
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	98.09
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	98.09
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	98.07
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	98.07
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	98.05
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	98.05
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	98.05
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	98.04
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.03
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	98.03
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.01
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	98.01
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	98.01
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	98.01
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.99
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.98
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.97
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.96
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.96
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.91
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.9
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.89
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	97.86
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.86
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	97.85
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.83
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.82
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	97.78
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.75
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.73
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.73
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.72
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.7
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.69
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.67
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	97.67
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.67
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	97.66
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.66
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.66
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.65
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	97.64
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.64
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.62
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	97.61
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	97.59
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.56
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.56
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	97.55
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	97.52
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	97.51
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.5
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.5
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.47
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.47
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.46
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.46
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	97.46
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.43
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.43
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	97.43
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	97.38
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	97.38
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	97.37
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	97.37
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.36
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	97.34
d1xpua3	289	Transcription termination factor Rho, ATPase domai	97.33
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	97.32
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	97.31
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	97.3
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	97.3
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.29
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.25
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.24
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	97.23
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	97.2
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.15
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.12
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.11
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	97.06
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	97.01
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	96.98
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.98
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	96.97
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.97
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.97
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	96.94
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.94
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.85
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	96.83
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	96.83
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	96.82
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.8
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.8
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.79
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.78
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.78
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	96.76
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	96.75
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.74
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	96.74
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	96.73
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	96.72
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	96.7
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.69
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.69
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	96.68
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.68
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	96.67
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	96.67
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.67
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.67
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	96.66
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	96.66
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	96.66
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.65
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	96.65
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	96.64
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.64
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.64
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	96.63
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	96.63
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	96.63
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	96.62
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	96.6
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	96.59
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	96.58
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	96.58
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	96.57
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	96.57
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	96.57
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	96.57
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.56
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	96.55
d1tuea_	205	Replication protein E1 helicase domain {Human papi	96.54
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	96.54
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	96.5
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	96.5
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	96.5
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	96.49
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	96.49
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.49
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	96.48
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.48
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	96.46
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.45
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.45
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	96.45
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	96.44
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	96.41
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.4
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	96.4
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	96.38
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	96.36
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	96.35
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	96.35
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.34
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	96.34
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	96.33
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	96.33
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	96.32
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.31
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	96.31
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.28
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	96.27
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	96.22
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	96.22
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	96.22
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	96.2
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	96.19
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	96.18
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	96.17
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	96.15
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.12
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.05
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	95.96
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.94
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	95.92
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	95.91
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	95.81
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	95.73
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	95.67
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	95.65
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	95.56
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	95.55
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	95.52
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	95.41
d1g5ta_	157	ATP:corrinoid adenosyltransferase CobA {Salmonella	95.37
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	95.31
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	95.29
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	95.28
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	95.26
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	95.23
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	94.5
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	94.48
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	94.01
d1hv8a1	208	Putative DEAD box RNA helicase {Archaeon Methanoco	94.0
d2j0sa1	222	Probable ATP-dependent RNA helicase DDX48 {Human (	93.75
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	93.67
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	93.6
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	93.6
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	93.58
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	93.41
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	93.38
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	93.34
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	93.14
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	93.1
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	92.98
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	92.92
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	92.86
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	92.79
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	92.67
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	92.62
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	92.28
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	92.23
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	91.7
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	90.01
d1t5la1	413	Nucleotide excision repair enzyme UvrB {Bacillus c	89.82
d1w36b1	485	Exodeoxyribonuclease V beta chain (RecB), N-termin	89.62
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	89.54
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	89.44
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	89.34
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	88.68
d1rifa_	282	DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]	88.62
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	88.59
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	88.42
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	88.31
d1bg2a_	323	Kinesin {Human (Homo sapiens) [TaxId: 9606]}	88.06
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	87.68
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	87.28
d1goja_	354	Kinesin {Neurospora crassa [TaxId: 5141]}	87.28
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	87.17
d1x88a1	345	Kinesin {Human (Homo sapiens), mitotic kinesin eg5	86.29
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	85.72
d1v8ka_	362	Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090	84.79
d2zfia1	349	Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090	84.6
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	84.14
d1f9va_	342	Kinesin motor Ncd (non-claret disjunctional) {Bake	83.92
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	83.56
d1c4oa1	408	Nucleotide excision repair enzyme UvrB {Thermus th	83.16
d1ry6a_	330	Kinesin {Malaria parasite (Plasmodium falciparum)	82.7
d1sdma_	364	Kinesin heavy chain-like protein {Potato (Solanum	82.66
d2g9na1	218	Initiation factor 4a {Human (Homo sapiens) [TaxId:	81.83
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	81.46
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	81.26
d1oywa2	206	RecQ helicase domain {Escherichia coli [TaxId: 562	81.05
d2ncda_	368	Kinesin motor Ncd (non-claret disjunctional) {Frui	80.15

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.87  E-value=7.3e-22  Score=149.15  Aligned_cols=146  Identities=13%  Similarity=0.078  Sum_probs=103.4

Q ss_pred             cCCCcccccchHHHHHHHHHHhc---cCCccEEEEEeCCCCcHHHHHHHHHhHHh--hhhcccceEEEEecCCcCHHHHH
Q 035585           21 SNKGYEAFKSRLSTLKSIQDALT---DVNVNIVGVYGMGGIGKTTLVKEFARQAS--EEKLFDQVVFSEVSQTPDIKKIH   95 (183)
Q Consensus        21 ~~~~~~~~~gR~~~l~~l~~~l~---~~~~~~v~i~G~~G~GKTtL~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~   95 (183)
                      ..|....++||+.+++.|.++|.   +....+++|+|++|+||||||++++++..  ...+|++++|++.+...+...+.
T Consensus        15 ~~p~~~~~~gR~~~~~~i~~~L~~~~~~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs~~~~~~~l~   94 (277)
T d2a5yb3          15 NVPKQMTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFD   94 (277)
T ss_dssp             TCBCCCCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHH
T ss_pred             CCCCCCceeCcHHHHHHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEEecCCCCHHHHH
Confidence            34456668899999999999885   44567999999999999999999998754  33468899999998876655554


Q ss_pred             HHH---HHHhCCCc----h---hHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcccccccCcCCCCCCCCcEEEEEecChH
Q 035585           96 GEI---AEKLGLEF----S---EEAESRRASRLYERLKKEKMILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCN  165 (183)
Q Consensus        96 ~~i---~~~l~~~~----~---~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~~~~~l~~~~~~~~~~~~iiitsr~~~  165 (183)
                      ..+   +..+....    +   ..........+.......+++++||||+|+..++..+.      ..+|+||+|||+..
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kr~LlVLDDv~~~~~~~~~~------~~~srilvTTR~~~  168 (277)
T d2a5yb3          95 LFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ------ELRLRCLVTTRDVE  168 (277)
T ss_dssp             HHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH------HTTCEEEEEESBGG
T ss_pred             HHHHHHHHHhcchhhcCCccchhhhhHHHHHHHHHHHhccCCeeEecchhhHHhhhhhhc------ccCceEEEEeehHH
Confidence            444   33332211    1   11122222333444445899999999999887776542      24789999999999


Q ss_pred             HHhhcCC
Q 035585          166 VLLNMSL  172 (183)
Q Consensus       166 ~~~~~~~  172 (183)
                      ++..+..
T Consensus       169 v~~~~~~  175 (277)
T d2a5yb3         169 ISNAASQ  175 (277)
T ss_dssp             GGGGCCS
T ss_pred             HHHhcCC
Confidence            9876543

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.33  E-value=1.5e-12  Score=94.28  Aligned_cols=137  Identities=20%  Similarity=0.142  Sum_probs=90.3

Q ss_pred             hhhhhhcCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHH
Q 035585           15 EEVWLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKI   94 (183)
Q Consensus        15 ~~~~~~~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (183)
                      ++.....|....+++|.+..++.|.+++.+...+.++++||+|+||||+|+.+++.+........+..++.+.......+
T Consensus         4 pw~eKyrP~~~~d~ig~~~~~~~L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la~~l~~~~~~~~~~~~n~~~~~~~~~i   83 (224)
T d1sxjb2           4 PWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV   83 (224)
T ss_dssp             CHHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH
T ss_pred             chHhHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCeEEEECCCCCCchhhHHHHHHHHhccccccccccccccccCCceeh
Confidence            35556678888999999999999999999877778999999999999999999998876533334556666555444332


Q ss_pred             HHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecChH
Q 035585           95 HGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDCN  165 (183)
Q Consensus        95 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~~  165 (183)
                      ...+......              .......+..++|+||++.+.  ....+...+......+.+++++.+..
T Consensus        84 ~~~~~~~~~~--------------~~~~~~~~~kviiiDe~d~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~  142 (224)
T d1sxjb2          84 RNQIKHFAQK--------------KLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSN  142 (224)
T ss_dssp             HTHHHHHHHB--------------CCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGG
T ss_pred             hhHHHHHHHh--------------hccCCCcceEEEEEecccccchhHHHHHhhhccccccceeeeeccCchh
Confidence            2222111000              000112456799999998774  23334344444555677777776554

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.27  E-value=4.4e-12  Score=91.83  Aligned_cols=136  Identities=13%  Similarity=0.141  Sum_probs=87.9

Q ss_pred             hhhhhhcCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHH
Q 035585           15 EEVWLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKI   94 (183)
Q Consensus        15 ~~~~~~~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (183)
                      |+....-|....+++|.++..+.|.+++.+...+.++++||+|+||||+++.+++.+....+...+...+.+........
T Consensus         3 pw~ekyrP~~~~divg~~~~~~~L~~~i~~~~~~~lLl~Gp~G~GKttl~~~la~~l~~~~~~~~~~e~~~~~~~~~~~~   82 (227)
T d1sxjc2           3 PWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVV   82 (227)
T ss_dssp             CHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHH
T ss_pred             chhhhhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCChhHHHHHHHHHhhcCCCcceeEEecccccCCeeee
Confidence            35555667788889999999999999998777777899999999999999999998765433333444444433332211


Q ss_pred             HHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecChH
Q 035585           95 HGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDCN  165 (183)
Q Consensus        95 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~~  165 (183)
                      .......               .........+..++|+||++.+.  ....+...+......+.+++++....
T Consensus        83 ~~~~~~~---------------~~~~~~~~~~~kiiiiDe~d~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~  140 (227)
T d1sxjc2          83 RNQIKDF---------------ASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAH  140 (227)
T ss_dssp             HTHHHHH---------------HHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred             ecchhhc---------------cccccccCCCeEEEEEeccccchhhHHHHHHHHhhhcccceeeccccCcHH
Confidence            1111000               00011122556799999998773  34444445555566778888877544

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.26  E-value=1.2e-10  Score=85.57  Aligned_cols=144  Identities=17%  Similarity=0.218  Sum_probs=92.6

Q ss_pred             CcccccchHHHHHHHHHHhc------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHH
Q 035585           24 GYEAFKSRLSTLKSIQDALT------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGE   97 (183)
Q Consensus        24 ~~~~~~gR~~~l~~l~~~l~------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (183)
                      .|..++||+.+++.+.+++.      ...++.++|+|++|+|||++++.+++.+... .....+++++.........+..
T Consensus        14 ~p~~l~~Re~ei~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~   92 (276)
T d1fnna2          14 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDK-TTARFVYINGFIYRNFTAIIGE   92 (276)
T ss_dssp             CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTS-CCCEEEEEETTTCCSHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhCCCCCCCceEEECCCCCCHHHHHHHHHHHHhcc-cCCcEEEecchhhhhhhhhhhh
Confidence            44568999999999999885      2355789999999999999999999998764 2223567777777777788888


Q ss_pred             HHHHhCCCchh--HHHHHHHHHHHHHH-hcCCeEEEEEeCCCCccc-----ccccCcCCC-CCCCCcEEEEEecChHHHh
Q 035585           98 IAEKLGLEFSE--EAESRRASRLYERL-KKEKMILVILDNIWKYLD-----LETVGIPFG-DDHRGCKLLLTARDCNVLL  168 (183)
Q Consensus        98 i~~~l~~~~~~--~~~~~~~~~~~~~~-~~~~~~llvlD~~~~~~~-----~~~l~~~~~-~~~~~~~iiitsr~~~~~~  168 (183)
                      +...+....+.  .........+.... ......++++|++++...     ...+..... .......+|.++.+.....
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  172 (276)
T d1fnna2          93 IARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN  172 (276)
T ss_dssp             HHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred             hHHhhhhhhhhhccchhHHHHHHHHHHhhcccccccchhHHHHhhhhhhhhHHHHHhccccccccceEEeecCCchhhhh
Confidence            88877554332  12222333344433 335778888898876532     111211111 1223345666666655544

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.25  E-value=6.9e-12  Score=91.07  Aligned_cols=135  Identities=13%  Similarity=0.105  Sum_probs=83.6

Q ss_pred             hhhhhcCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHH
Q 035585           16 EVWLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIH   95 (183)
Q Consensus        16 ~~~~~~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (183)
                      +....-|....+++|.+...+.|.+++.+.+.+.++|+||+|+||||+|+.+++.+.....-...+.++++.......+.
T Consensus        14 w~~ky~P~~~~diig~~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtla~~iak~l~~~~~~~~~~e~n~s~~~~~~~~~   93 (231)
T d1iqpa2          14 WVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIR   93 (231)
T ss_dssp             HHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTH
T ss_pred             HHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHHhcccCCCeeEEecCcccchhHHH
Confidence            45566677888999999999999999998888889999999999999999999987653222234445544321111100


Q ss_pred             HHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecChH
Q 035585           96 GEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDCN  165 (183)
Q Consensus        96 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~~  165 (183)
                      ..+..               ..........+..++++||++...  ....+...+......+.+|.++....
T Consensus        94 ~~~~~---------------~~~~~~~~~~~~~iilide~d~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~  150 (231)
T d1iqpa2          94 EKVKE---------------FARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSS  150 (231)
T ss_dssp             HHHHH---------------HHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred             HHHHH---------------HHhhhhccCCCceEEeehhhhhcchhHHHHHhhhcccCCcceEEEeccCChh
Confidence            00000               000011123577899999998663  23333333333344556666665443

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.24  E-value=2.1e-12  Score=95.51  Aligned_cols=51  Identities=16%  Similarity=0.229  Sum_probs=42.7

Q ss_pred             hhcCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           19 LKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        19 ~~~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      +.|...+..|+||+++++.|.+.    ..+.++|+|++|+|||+|+++++.....
T Consensus         5 ~~p~~~~~~f~GR~~el~~l~~~----~~~~i~i~G~~G~GKTsLl~~~~~~~~~   55 (283)
T d2fnaa2           5 TSPKDNRKDFFDREKEIEKLKGL----RAPITLVLGLRRTGKSSIIKIGINELNL   55 (283)
T ss_dssp             SSCCCSGGGSCCCHHHHHHHHHT----CSSEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred             CCCCCChhhCCChHHHHHHHHhc----cCCEEEEEcCCCCcHHHHHHHHHHHCCC
Confidence            34666789999999999999874    3478999999999999999998876543

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.23  E-value=4.1e-12  Score=92.35  Aligned_cols=142  Identities=13%  Similarity=0.115  Sum_probs=85.4

Q ss_pred             hhhhhcCCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhc-ccceEEEEecCCcCHHHH
Q 035585           16 EVWLKSNKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKL-FDQVVFSEVSQTPDIKKI   94 (183)
Q Consensus        16 ~~~~~~~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   94 (183)
                      +....-|.....++|++...+.|.+++.+...+.++++||+|+||||+++.+++++..... ......++.+........
T Consensus         2 w~~ky~P~~~~diig~~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~   81 (237)
T d1sxjd2           2 WVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV   81 (237)
T ss_dssp             HHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH
T ss_pred             cchhhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCChHHHHHHHHHHHcCCcccccchhheeccccccchHH
Confidence            3445567777889999999999999998777778999999999999999999998754322 223444555444444332


Q ss_pred             HHHHHHHh--CCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecCh
Q 035585           95 HGEIAEKL--GLEFSEEAESRRASRLYERLKKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDC  164 (183)
Q Consensus        95 ~~~i~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~  164 (183)
                      ...+-+..  ......       .............++|+||++.+.  ....+...+......+.+++++.+.
T Consensus        82 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~viiiDe~d~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~  148 (237)
T d1sxjd2          82 REKVKNFARLTVSKPS-------KHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYV  148 (237)
T ss_dssp             TTHHHHHHHSCCCCCC-------TTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred             HHHHHHHhhhhhhhhh-------HHHHhhccccCceEEEEecccccCHHHHHHHhhcccccccccccccccccc
Confidence            22221111  111000       011111222455689999998763  2333333333344566666665543

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.22  E-value=7.3e-11  Score=87.34  Aligned_cols=132  Identities=14%  Similarity=0.213  Sum_probs=85.8

Q ss_pred             cccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhc----ccceEE-EEecCCcCHHHHHHHHHHH
Q 035585           27 AFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKL----FDQVVF-SEVSQTPDIKKIHGEIAEK  101 (183)
Q Consensus        27 ~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~i~~~  101 (183)
                      ..+||+++++++...|.+.....++|+|++|+|||+++..++.++...+.    ....+| ++...-.+           
T Consensus        19 ~~igRd~Ei~~l~~iL~r~~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~~lia-----------   87 (268)
T d1r6bx2          19 PLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLA-----------   87 (268)
T ss_dssp             CCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---C-----------
T ss_pred             cccChHHHHHHHHHHHhcCccCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeeechHhc-----------
Confidence            47899999999999998777789999999999999999999988865421    122333 33222100           


Q ss_pred             hCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCcc----------cccccCcCCCCCCCCcEEEEEecChHHHhhcC
Q 035585          102 LGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKYL----------DLETVGIPFGDDHRGCKLLLTARDCNVLLNMS  171 (183)
Q Consensus       102 l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~~----------~~~~l~~~~~~~~~~~~iiitsr~~~~~~~~~  171 (183)
                       +... .....+.+..+...+...+..+|++||++.+.          ++..++.+... ....++|.+|..+++-..+.
T Consensus        88 -g~~~-~g~~e~r~~~i~~~~~~~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~-rg~i~vIgatT~eey~~~~e  164 (268)
T d1r6bx2          88 -GTKY-RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEFSNIFE  164 (268)
T ss_dssp             -CCCC-SSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEECHHHHHCCCC
T ss_pred             -cCcc-chhHHHHHHHHHHHhhccCCceEEecchHHHhcCCCCCCccccHHHHhhHHHh-CCCCeEEEeCCHHHHHHHHh
Confidence             0011 11223344556666666788999999998662          23333344333 23457888888888765444


Q ss_pred             C
Q 035585          172 L  172 (183)
Q Consensus       172 ~  172 (183)
                      .
T Consensus       165 ~  165 (268)
T d1r6bx2         165 K  165 (268)
T ss_dssp             C
T ss_pred             h
Confidence            3

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=2.8e-10  Score=82.96  Aligned_cols=125  Identities=12%  Similarity=0.222  Sum_probs=79.6

Q ss_pred             hcCCCcccccchHHHHHHHHHHhccCC-ccEEEEEeCCCCcHHHHHHHHHhHHhhhhccc-------------------c
Q 035585           20 KSNKGYEAFKSRLSTLKSIQDALTDVN-VNIVGVYGMGGIGKTTLVKEFARQASEEKLFD-------------------Q   79 (183)
Q Consensus        20 ~~~~~~~~~~gR~~~l~~l~~~l~~~~-~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~-------------------~   79 (183)
                      ..|....+++|.+...+.|.+++.+.+ ++.++++|++|+|||++|+.+++.+.......                   .
T Consensus         6 yrP~~~~dlig~~~~~~~L~~~i~~~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~   85 (239)
T d1njfa_           6 WRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVD   85 (239)
T ss_dssp             TCCSSGGGSCSCHHHHHHHHHHHHTTCCCSEEEEECSTTSSHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHHTCCTT
T ss_pred             hCCCCHHHccChHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCccccccCccccchHHHHHHcCCCCe
Confidence            445677789999999999999987554 45689999999999999999988775431110                   0


Q ss_pred             eEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--cccccCcCCCCCCC
Q 035585           80 VVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLK----KEKMILVILDNIWKYL--DLETVGIPFGDDHR  153 (183)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~  153 (183)
                      ++.++.......                     +.+..+.+.+.    .++..++||||+|.+.  ....|+..+.....
T Consensus        86 ~~~~~~~~~~~i---------------------~~ir~~~~~~~~~~~~~~~kviiIde~d~l~~~~q~~Llk~lE~~~~  144 (239)
T d1njfa_          86 LIEIDAASRTKV---------------------EDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPE  144 (239)
T ss_dssp             EEEEETTCSSSH---------------------HHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCT
T ss_pred             EEEecchhcCCH---------------------HHHHHHHHHHHhccccCCCEEEEEECcccCCHHHHHHHHHHHhcCCC
Confidence            122222111111                     11122222221    2456799999999873  34455555555566


Q ss_pred             CcEEEEEecChH
Q 035585          154 GCKLLLTARDCN  165 (183)
Q Consensus       154 ~~~iiitsr~~~  165 (183)
                      .+.+|++|.+..
T Consensus       145 ~~~~il~tn~~~  156 (239)
T d1njfa_         145 HVKFLLATTDPQ  156 (239)
T ss_dssp             TEEEEEEESCGG
T ss_pred             CeEEEEEcCCcc
Confidence            778888877654

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.11  E-value=6.4e-10  Score=81.48  Aligned_cols=93  Identities=17%  Similarity=0.223  Sum_probs=56.2

Q ss_pred             ccccchHHHHHHHHHHhc----------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHH
Q 035585           26 EAFKSRLSTLKSIQDALT----------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIH   95 (183)
Q Consensus        26 ~~~~gR~~~l~~l~~~l~----------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (183)
                      .++++..+.++.+.+...          ..+.+.++++||+|+|||++|+.+++.....     .+.++.+..       
T Consensus         9 ~~~i~~~~~i~~i~~~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~la~alA~~~~~~-----~~~i~~~~~-------   76 (246)
T d1d2na_           9 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFP-----FIKICSPDK-------   76 (246)
T ss_dssp             TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCS-----EEEEECGGG-------
T ss_pred             cCCcCcCHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECcCCCCHHHHHHHHhhccccc-----ccccccccc-------
Confidence            345665555554444322          2345679999999999999999999875432     233333321       


Q ss_pred             HHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 035585           96 GEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWK  137 (183)
Q Consensus        96 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~  137 (183)
                            + ...........+..++.......+.+|+|||+|.
T Consensus        77 ------~-~g~~~~~~~~~i~~if~~A~~~~p~il~iDEid~  111 (246)
T d1d2na_          77 ------M-IGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIER  111 (246)
T ss_dssp             ------C-TTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHH
T ss_pred             ------c-ccccccchhhhhhhhhhhhhhcccceeehhhhhh
Confidence                  0 1111122223345556666667889999999874

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.08  E-value=6.8e-10  Score=78.09  Aligned_cols=130  Identities=14%  Similarity=0.176  Sum_probs=81.2

Q ss_pred             cccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhh----cccceEE-EEecCCcCHHHHHHHHHHH
Q 035585           27 AFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEK----LFDQVVF-SEVSQTPDIKKIHGEIAEK  101 (183)
Q Consensus        27 ~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~i~~~  101 (183)
                      ..+||+++++++.+.|.+.....++|+|++|+|||+++..++.++...+    .....+| ++..          .++. 
T Consensus        23 ~~igRd~Ei~~l~~iL~r~~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~~----------~LiA-   91 (195)
T d1jbka_          23 PVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMG----------ALVA-   91 (195)
T ss_dssp             CCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHH----------HHHT-
T ss_pred             CCcCcHHHHHHHHHHHhccCCCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeHH----------HHhc-
Confidence            4789999999999999977778999999999999999999999886532    1223333 2221          1111 


Q ss_pred             hCCCchhHHHHHHHHHHHHHHh-cCCeEEEEEeCCCCccc---------ccccCcCCCCCCCCcEEEEEecChHHHhhc
Q 035585          102 LGLEFSEEAESRRASRLYERLK-KEKMILVILDNIWKYLD---------LETVGIPFGDDHRGCKLLLTARDCNVLLNM  170 (183)
Q Consensus       102 l~~~~~~~~~~~~~~~~~~~~~-~~~~~llvlD~~~~~~~---------~~~l~~~~~~~~~~~~iiitsr~~~~~~~~  170 (183)
                       +.... ....+.+..+++.+. ..+.++|+|||++....         ...++.+... ....++|.+|..+++-..+
T Consensus        92 -g~~~r-G~~E~rl~~il~e~~~~~~~iILfIDeih~l~~~g~~~g~~d~~~~Lkp~L~-rg~l~~IgatT~eey~~~~  167 (195)
T d1jbka_          92 -GAKYR-GEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-RGELHCVGATTLDEYRQYI  167 (195)
T ss_dssp             -TTCSH-HHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH-TTSCCEEEEECHHHHHHHT
T ss_pred             -cCCcc-HHHHHHHHHHHHHHhcCCCcEEEEcchHHHHhcCCCCCCcccHHHHHHHHHh-CCCceEEecCCHHHHHHHH
Confidence             11111 122334445555553 35689999999986632         2122222222 2345688888877765543

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.02  E-value=7.4e-10  Score=81.74  Aligned_cols=116  Identities=22%  Similarity=0.269  Sum_probs=76.2

Q ss_pred             CCcccccchHHHHHHHHHHhc----c-CCc----cEEEEEeCCCCcHHHHHHHHHhHHhhhh----cccceEEEEecCCc
Q 035585           23 KGYEAFKSRLSTLKSIQDALT----D-VNV----NIVGVYGMGGIGKTTLVKEFARQASEEK----LFDQVVFSEVSQTP   89 (183)
Q Consensus        23 ~~~~~~~gR~~~l~~l~~~l~----~-~~~----~~v~i~G~~G~GKTtL~~~~~~~~~~~~----~~~~~~~~~~~~~~   89 (183)
                      -.|..+.+|+.+++.|.+.+.    + ..+    .++.|+|++|+|||++++.+++.+....    ....+.++++....
T Consensus        13 ~~P~~~~~Re~e~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~   92 (287)
T d1w5sa2          13 YIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAP   92 (287)
T ss_dssp             CCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCC
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHHHcCCCCCCcceEEEeECCCCCCHHHHHHHHHHHHHhhcccccCCceeeeecccccc
Confidence            345688999999999988763    1 111    2456789999999999999999886531    12236677777777


Q ss_pred             CHHHHHHHHHHHhCCCchh--HHHHHHHHHHHHHHh-cCCeEEEEEeCCCCc
Q 035585           90 DIKKIHGEIAEKLGLEFSE--EAESRRASRLYERLK-KEKMILVILDNIWKY  138 (183)
Q Consensus        90 ~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~~~-~~~~~llvlD~~~~~  138 (183)
                      .....+......+......  .........+..... .....++++|+++..
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iide~d~l  144 (287)
T d1w5sa2          93 NLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSM  144 (287)
T ss_dssp             SHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHH
T ss_pred             chhhHHHHHhhhcccccccccchHHHHHHHHHHHHHhccCccccceeEEEEe
Confidence            7777777777766543222  222222333333332 367888999998754

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.95  E-value=2.2e-10  Score=83.68  Aligned_cols=52  Identities=15%  Similarity=0.175  Sum_probs=43.1

Q ss_pred             hcCCCcccccchHHHHHHHHHHhcc-CCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           20 KSNKGYEAFKSRLSTLKSIQDALTD-VNVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        20 ~~~~~~~~~~gR~~~l~~l~~~l~~-~~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      .-|.....++|+++..+.|.+++.+ ...+.++++||+|+||||+++.+++.+
T Consensus         5 y~P~~~~diig~~~~~~~L~~~~~~~~~~~~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2           5 YRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             TCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred             cCCCCHHHccCcHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence            3455667899999999999888763 345678899999999999999999876

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=98.92  E-value=2.7e-09  Score=82.85  Aligned_cols=127  Identities=13%  Similarity=0.154  Sum_probs=72.0

Q ss_pred             cccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhc----ccc-eEEEEecCCcCHHHHHHHHHHH
Q 035585           27 AFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKL----FDQ-VVFSEVSQTPDIKKIHGEIAEK  101 (183)
Q Consensus        27 ~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~i~~~  101 (183)
                      ..+||+.+++++...|.+.....++|+|++|+|||+++..++.++...+.    .+. ++.+++..--+-.         
T Consensus        23 ~~~gr~~ei~~~~~~L~r~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~---------   93 (387)
T d1qvra2          23 PVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGA---------   93 (387)
T ss_dssp             CCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC----------------
T ss_pred             CCcCcHHHHHHHHHHHhcCCCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHhhhhccc---------
Confidence            47899999999999998777778899999999999999998887765421    222 3333333211100         


Q ss_pred             hCCCchhHHHHHHHHHHHHHHhc-CCeEEEEEeCCCCcc---------cccccCcCCCCCCCCcEEEEEecChHHH
Q 035585          102 LGLEFSEEAESRRASRLYERLKK-EKMILVILDNIWKYL---------DLETVGIPFGDDHRGCKLLLTARDCNVL  167 (183)
Q Consensus       102 l~~~~~~~~~~~~~~~~~~~~~~-~~~~llvlD~~~~~~---------~~~~l~~~~~~~~~~~~iiitsr~~~~~  167 (183)
                         ...+ ...+.+..+...+.. .+.++|+|||++.+.         +...++.+.... ...++|-+|...+.-
T Consensus        94 ---~~~g-~~e~r~~~i~~~~~~~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~r-g~~~~I~~tT~~ey~  164 (387)
T d1qvra2          94 ---KYRG-EFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR-GELRLIGATTLDEYR  164 (387)
T ss_dssp             --------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT-TCCCEEEEECHHHHH
T ss_pred             ---Ccch-hHHHHHHHHHHHhccCCCceEEEeccHHHHhcCCCCCCcccHHHHHHHHHhC-CCcceeeecCHHHHH
Confidence               0001 122233445555543 457999999998662         222222332222 234577777766663

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.84  E-value=6.5e-09  Score=73.55  Aligned_cols=115  Identities=10%  Similarity=0.040  Sum_probs=74.6

Q ss_pred             HHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcc-cceEEEEecCCc-CHHHHHHHHHHHhCCCchhHHH
Q 035585           34 TLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLF-DQVVFSEVSQTP-DIKKIHGEIAEKLGLEFSEEAE  111 (183)
Q Consensus        34 ~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~i~~~l~~~~~~~~~  111 (183)
                      +++.+.++.+....+.+.++|++|+|||++|..+.+........ ..+.++...... ....+ +.+.+.+...      
T Consensus         2 ~~~~l~~~i~~~~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~~~~I~Id~I-R~i~~~~~~~------   74 (198)
T d2gnoa2           2 QLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDI-RTIKDFLNYS------   74 (198)
T ss_dssp             HHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHH-HHHHHHHTSC------
T ss_pred             HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCCcCCCCHHHH-HHHHHHHhhC------
Confidence            46677777777788999999999999999999999877543211 124554433221 22221 1222222111      


Q ss_pred             HHHHHHHHHHHhcCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecChH
Q 035585          112 SRRASRLYERLKKEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDCN  165 (183)
Q Consensus       112 ~~~~~~~~~~~~~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~~  165 (183)
                                -..++.-++|||+++.+.  ..+.++..+.....++.+|++|.+.+
T Consensus        75 ----------~~~~~~KviIId~ad~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~  120 (198)
T d2gnoa2          75 ----------PELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWH  120 (198)
T ss_dssp             ----------CSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGG
T ss_pred             ----------cccCCCEEEEEeCccccchhhhhHHHHHHhCCCCCceeeeccCChh
Confidence                      012566799999999774  56677677666677888888887765

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=98.84  E-value=1.7e-08  Score=71.80  Aligned_cols=129  Identities=7%  Similarity=0.025  Sum_probs=71.6

Q ss_pred             chHHHHHHHHHHhccCC-ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCC----
Q 035585           30 SRLSTLKSIQDALTDVN-VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGL----  104 (183)
Q Consensus        30 gR~~~l~~l~~~l~~~~-~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~----  104 (183)
                      .-+...+.|.+.+.+.+ ++.++++|++|+||||+|+.++..+-........   .+....+.    ..+......    
T Consensus         6 w~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~---~~~~~~~~----~~i~~~~~~~~~~   78 (207)
T d1a5ta2           6 WLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHK---SCGHCRGC----QLMQAGTHPDYYT   78 (207)
T ss_dssp             GGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTB---CCSCSHHH----HHHHHTCCTTEEE
T ss_pred             ccHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHHhcccccccccc---cccccchh----hhhhhccccccch
Confidence            34456777887777555 4569999999999999999999876422100000   00000000    011110000    


Q ss_pred             ----CchhHHHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--cccccCcCCCCCCCCcEEEEEecChH
Q 035585          105 ----EFSEEAESRRASRLYERLK----KEKMILVILDNIWKYL--DLETVGIPFGDDHRGCKLLLTARDCN  165 (183)
Q Consensus       105 ----~~~~~~~~~~~~~~~~~~~----~~~~~llvlD~~~~~~--~~~~l~~~~~~~~~~~~iiitsr~~~  165 (183)
                          ........+.++.+.+.+.    ..+..++||||+|.+.  ....++..+.....++.+|++|.+..
T Consensus        79 ~~~~~~~~~i~~~~ir~l~~~~~~~~~~~~~kviIide~d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~  149 (207)
T d1a5ta2          79 LAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPE  149 (207)
T ss_dssp             ECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred             hhhhhcccccccchhhHHhhhhhhccccCccceEEechhhhhhhhhhHHHHHHHHhhcccceeeeeecChh
Confidence                0000001112223333322    2567899999999774  45666666666677888888888765

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=98.83  E-value=1e-08  Score=74.17  Aligned_cols=52  Identities=27%  Similarity=0.295  Sum_probs=42.6

Q ss_pred             CCCcccccchHHHHHHHHHHhc-----cCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           22 NKGYEAFKSRLSTLKSIQDALT-----DVNVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        22 ~~~~~~~~gR~~~l~~l~~~l~-----~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      |.....++|.+...+.|..++.     ....+.++++||+|+|||++|+.+++.+..
T Consensus         5 P~~~~divGqe~~~~~l~~~i~~~~~~~~~~~~~L~~GPpGtGKT~lA~~la~~~~~   61 (238)
T d1in4a2           5 PKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT   61 (238)
T ss_dssp             CSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred             CCcHHHcCChHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHhccCC
Confidence            4456778999999998888875     334567899999999999999999987654

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=98.75  E-value=2.2e-08  Score=72.40  Aligned_cols=51  Identities=20%  Similarity=0.290  Sum_probs=40.9

Q ss_pred             CCCcccccchHHHHHHHHHHhc-----cCCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           22 NKGYEAFKSRLSTLKSIQDALT-----DVNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        22 ~~~~~~~~gR~~~l~~l~~~l~-----~~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      |.....++|-+...+.|..++.     +..++.++++||+|+||||+|+.+++.+.
T Consensus         5 P~~~ddivGq~~~~~~L~~~i~~~~~~~~~~~~~Ll~GPpG~GKTtla~~la~~~~   60 (239)
T d1ixsb2           5 PKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG   60 (239)
T ss_dssp             CCSGGGSCSCHHHHHHHHHHHHHHTTSSSCCCCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCCHHHhCCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            4456678999888888877765     24567899999999999999999988754

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=98.74  E-value=3.2e-08  Score=72.25  Aligned_cols=94  Identities=20%  Similarity=0.276  Sum_probs=57.9

Q ss_pred             CcccccchHHHHHHHHHHh---c---------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCH
Q 035585           24 GYEAFKSRLSTLKSIQDAL---T---------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDI   91 (183)
Q Consensus        24 ~~~~~~gR~~~l~~l~~~l---~---------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (183)
                      ...++.|-++..+.|.+.+   .         ...++.++++||+|+|||+||+.+++.+..     .++.++++     
T Consensus         7 ~~~di~G~~~~k~~l~~~i~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~~~~~-----~~~~i~~~-----   76 (247)
T d1ixza_           7 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-----PFITASGS-----   76 (247)
T ss_dssp             CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEHH-----
T ss_pred             cHHHHccHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHHHHHcCC-----CEEEEEhH-----
Confidence            3455667666665555432   1         123457999999999999999999987543     23444432     


Q ss_pred             HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 035585           92 KKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWK  137 (183)
Q Consensus        92 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~  137 (183)
                           .+.+.    ..+ .....+..++.......+.+|+|||+|.
T Consensus        77 -----~l~~~----~~g-~~~~~l~~~f~~a~~~~p~Ii~iDeid~  112 (247)
T d1ixza_          77 -----DFVEM----FVG-VGAARVRDLFETAKRHAPCIVFIDEIDA  112 (247)
T ss_dssp             -----HHHHS----CTT-HHHHHHHHHHHHHTTSSSEEEEEETHHH
T ss_pred             -----Hhhhc----ccc-HHHHHHHHHHHHHHHcCCEEEEEEChhh
Confidence                 12211    111 1223345666666667889999999874

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.67  E-value=1.6e-08  Score=73.68  Aligned_cols=67  Identities=16%  Similarity=0.205  Sum_probs=49.5

Q ss_pred             hcCCCcccccchHHHHHHHHHHhcc-----------------CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEE
Q 035585           20 KSNKGYEAFKSRLSTLKSIQDALTD-----------------VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVF   82 (183)
Q Consensus        20 ~~~~~~~~~~gR~~~l~~l~~~l~~-----------------~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~   82 (183)
                      .-|.....++|.+..++.|.+++..                 ...+.++++||+|+||||+|+.+++++...     +.+
T Consensus         8 y~P~~~~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~~~~-----~~~   82 (253)
T d1sxja2           8 YAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYD-----ILE   82 (253)
T ss_dssp             TCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCE-----EEE
T ss_pred             cCCCCHHHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHHHhh-----hhc
Confidence            4466678899999999999988742                 234689999999999999999999875432     345


Q ss_pred             EEecCCcCH
Q 035585           83 SEVSQTPDI   91 (183)
Q Consensus        83 ~~~~~~~~~   91 (183)
                      ++.+.....
T Consensus        83 ~~~~~~~~~   91 (253)
T d1sxja2          83 QNASDVRSK   91 (253)
T ss_dssp             ECTTSCCCH
T ss_pred             cccccchhh
Confidence            555444443

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=98.63  E-value=2.1e-08  Score=73.64  Aligned_cols=92  Identities=20%  Similarity=0.186  Sum_probs=56.8

Q ss_pred             ccccchHHHHHHHHHH---hc---------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHH
Q 035585           26 EAFKSRLSTLKSIQDA---LT---------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKK   93 (183)
Q Consensus        26 ~~~~gR~~~l~~l~~~---l~---------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (183)
                      .++.|-++..+.|.+.   +.         ...++.++++||+|+|||++|+.+++.+...     ++.++++.-.+.  
T Consensus        12 ~Di~Gl~~~k~~l~e~v~~~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~~~~-----~~~i~~~~l~~~--   84 (256)
T d1lv7a_          12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP-----FFTISGSDFVEM--   84 (256)
T ss_dssp             GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCC-----EEEECSCSSTTS--
T ss_pred             HHHhchHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHHHcCCC-----EEEEEhHHhhhc--
Confidence            4566666666666543   22         1235679999999999999999999876432     344444332110  


Q ss_pred             HHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 035585           94 IHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWK  137 (183)
Q Consensus        94 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~  137 (183)
                              .    .+. ....+..++.......+.+|+|||+|.
T Consensus        85 --------~----~g~-~~~~l~~~f~~A~~~~P~il~iDeiD~  115 (256)
T d1lv7a_          85 --------F----VGV-GASRVRDMFEQAKKAAPCIIFIDEIDA  115 (256)
T ss_dssp             --------C----CCC-CHHHHHHHHHHHHTTCSEEEEETTHHH
T ss_pred             --------c----hhH-HHHHHHHHHHHHHHcCCEEEEEEChhh
Confidence                    0    000 112345556666668889999999874

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.52  E-value=8e-08  Score=70.51  Aligned_cols=73  Identities=15%  Similarity=0.251  Sum_probs=45.7

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcC
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKE  125 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~  125 (183)
                      .++-++++||+|+|||++++.+++.....     +++++++.              +.....+. .......++......
T Consensus        37 ~~~giLL~GppGtGKT~l~~ala~~~~~~-----~~~i~~~~--------------l~~~~~g~-~~~~l~~~f~~A~~~   96 (258)
T d1e32a2          37 PPRGILLYGPPGTGKTLIARAVANETGAF-----FFLINGPE--------------IMSKLAGE-SESNLRKAFEEAEKN   96 (258)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHTTCE-----EEEECHHH--------------HTTSCTTH-HHHHHHHHHHHHHHT
T ss_pred             CCceeEEecCCCCCchHHHHHHHHHhCCe-----EEEEEchh--------------hccccccc-HHHHHHHHHHHHHhc
Confidence            45679999999999999999999875432     22322211              11111111 122334455555558


Q ss_pred             CeEEEEEeCCCCc
Q 035585          126 KMILVILDNIWKY  138 (183)
Q Consensus       126 ~~~llvlD~~~~~  138 (183)
                      ++.+|+|||++..
T Consensus        97 ~p~il~iDeid~l  109 (258)
T d1e32a2          97 APAIIFIDELDAI  109 (258)
T ss_dssp             CSEEEEESSGGGT
T ss_pred             CCeEEEehhhhhh
Confidence            8999999999865

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.47  E-value=1.7e-07  Score=68.91  Aligned_cols=73  Identities=16%  Similarity=0.251  Sum_probs=46.1

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcC
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKE  125 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~  125 (183)
                      ....++|+||+|+|||+|++.+++.+...     .+.+++          ..+..    .... .....+..++......
T Consensus        40 ~~~giLL~Gp~GtGKT~l~~ala~~~~~~-----~~~~~~----------~~l~~----~~~~-~~~~~l~~~f~~A~~~   99 (265)
T d1r7ra3          40 PSKGVLFYGPPGCGKTLLAKAIANECQAN-----FISIKG----------PELLT----MWFG-ESEANVREIFDKARQA   99 (265)
T ss_dssp             CCCEEEEBCCTTSSHHHHHHHHHHHTTCE-----EEEECH----------HHHHT----SCTT-THHHHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCcchhHHHHHHHHhCCc-----EEEEEH----------HHhhh----cccc-chHHHHHHHHHHHHhc
Confidence            34679999999999999999999987543     222221          11111    1111 1223344555555557


Q ss_pred             CeEEEEEeCCCCc
Q 035585          126 KMILVILDNIWKY  138 (183)
Q Consensus       126 ~~~llvlD~~~~~  138 (183)
                      .+.+|+|||++..
T Consensus       100 ~p~il~ideid~l  112 (265)
T d1r7ra3         100 APCVLFFDELDSI  112 (265)
T ss_dssp             CSEEEEESSGGGT
T ss_pred             CCcceeHHhhhhc
Confidence            8999999999854

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.44  E-value=7.7e-08  Score=69.30  Aligned_cols=51  Identities=14%  Similarity=0.144  Sum_probs=32.7

Q ss_pred             CCeEEEEEeCCCCcccc---cccCcCCCC--CCCCcEEEEEecChHHHhhcCCCCc
Q 035585          125 EKMILVILDNIWKYLDL---ETVGIPFGD--DHRGCKLLLTARDCNVLLNMSLCRS  175 (183)
Q Consensus       125 ~~~~llvlD~~~~~~~~---~~l~~~~~~--~~~~~~iiitsr~~~~~~~~~~~~~  175 (183)
                      .++-+|++||.-...+.   ..+...+..  ...|..+|++|||.+.+..+.....
T Consensus       147 ~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~  202 (232)
T d2awna2         147 AEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIV  202 (232)
T ss_dssp             TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEE
T ss_pred             cCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence            77889999998755431   111122211  2247789999999998887665443

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.42  E-value=1.9e-07  Score=66.52  Aligned_cols=99  Identities=18%  Similarity=0.227  Sum_probs=57.2

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCe
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKM  127 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  127 (183)
                      ..+.|+|++|+|||.|+.++++.....  ...++|++..      .+...+...+...        ....+.+.+  ...
T Consensus        37 n~l~l~G~~G~GKTHLl~A~~~~~~~~--~~~~~~~~~~------~~~~~~~~~~~~~--------~~~~~~~~~--~~~   98 (213)
T d1l8qa2          37 NPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSAD------DFAQAMVEHLKKG--------TINEFRNMY--KSV   98 (213)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEEHH------HHHHHHHHHHHHT--------CHHHHHHHH--HTC
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHhccC--ccceEEechH------HHHHHHHHHHHcc--------chhhHHHHH--hhc
Confidence            348899999999999999999998765  3355665433      2333333322111        112333333  356


Q ss_pred             EEEEEeCCCCcc---cccc-cCcCCCC-CCCCcEEEEEecCh
Q 035585          128 ILVILDNIWKYL---DLET-VGIPFGD-DHRGCKLLLTARDC  164 (183)
Q Consensus       128 ~llvlD~~~~~~---~~~~-l~~~~~~-~~~~~~iiitsr~~  164 (183)
                      -+|+|||++...   .++. +...+.. ...+..+|+||+..
T Consensus        99 dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~  140 (213)
T d1l8qa2          99 DLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH  140 (213)
T ss_dssp             SEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             cchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCc
Confidence            789999998552   2211 2222221 23466788888743

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.36  E-value=5.9e-07  Score=66.53  Aligned_cols=29  Identities=21%  Similarity=0.304  Sum_probs=24.7

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      .+...++|+|++|+|||||++.+...+..
T Consensus        60 ~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p   88 (281)
T d1r0wa_          60 EKGEMLAITGSTGSGKTSLLMLILGELEA   88 (281)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHTSSCC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhCCCcC
Confidence            34578999999999999999999876654

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=98.36  E-value=9.1e-08  Score=69.33  Aligned_cols=50  Identities=16%  Similarity=0.084  Sum_probs=33.4

Q ss_pred             cCCeEEEEEeCCCCccc------ccccCcCCCCCCCCcEEEEEecChHHHhhcCCCCc
Q 035585          124 KEKMILVILDNIWKYLD------LETVGIPFGDDHRGCKLLLTARDCNVLLNMSLCRS  175 (183)
Q Consensus       124 ~~~~~llvlD~~~~~~~------~~~l~~~~~~~~~~~~iiitsr~~~~~~~~~~~~~  175 (183)
                      ..++-+|++||+-...+      +..+...+.  ..|..||++||+.+.+..+.....
T Consensus       149 ~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~--~~g~tii~~tH~l~~~~~~~drv~  204 (238)
T d1vpla_         149 MVNPRLAILDEPTSGLDVLNAREVRKILKQAS--QEGLTILVSSHNMLEVEFLCDRIA  204 (238)
T ss_dssp             TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH--HTTCEEEEEECCHHHHTTTCSEEE
T ss_pred             hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHH--hcCCEEEEEeCCHHHHHHhCCEEE
Confidence            48889999999865533      112222222  237789999999999887766543

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=98.36  E-value=2.7e-07  Score=66.98  Aligned_cols=27  Identities=26%  Similarity=0.303  Sum_probs=23.0

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      .+...++|+|++|+|||||++.+...+
T Consensus        26 ~~Ge~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          26 QPNSIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            345789999999999999999997554

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.35  E-value=1.5e-06  Score=61.40  Aligned_cols=59  Identities=22%  Similarity=0.259  Sum_probs=42.4

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC-cCHHHHHHHHHHHhCCC
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT-PDIKKIHGEIAEKLGLE  105 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~l~~~  105 (183)
                      .++.++.++|++|+||||.+..++..+...  -..+..+.+... ..-.+.++..++.++.+
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~~--g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~   63 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNL--GKKVMFCAGDTFRAAGGTQLSEWGKRLSIP   63 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEECCCCSSTTHHHHHHHHHHHHTCC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHC--CCcEEEEEeccccccchhhHhhcccccCce
Confidence            456899999999999999888888777644  335677666643 45556666777766554

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.32  E-value=1.5e-06  Score=61.51  Aligned_cols=60  Identities=17%  Similarity=0.207  Sum_probs=41.1

Q ss_pred             cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC-cCHHHHHHHHHHHhCCC
Q 035585           44 DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT-PDIKKIHGEIAEKLGLE  105 (183)
Q Consensus        44 ~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~l~~~  105 (183)
                      ...+.++.++|++|+||||.+..++.++..+  -..+..+.+... ..-.+.++..++.++.+
T Consensus         6 ~~~p~vi~lvGptGvGKTTTiAKLA~~~~~~--g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~   66 (211)
T d2qy9a2           6 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQ--GKSVMLAAGDTFRAAAVEQLQVWGQRNNIP   66 (211)
T ss_dssp             SCTTEEEEEECCTTSCHHHHHHHHHHHHHTT--TCCEEEECCCTTCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHC--CCcEEEEecccccccchhhhhhhhhhcCCc
Confidence            4456889999999999998888888877644  234556555443 23455666666666554

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.31  E-value=5.2e-07  Score=64.78  Aligned_cols=24  Identities=25%  Similarity=0.437  Sum_probs=21.2

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFAR   69 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~   69 (183)
                      +..+++|.|++|+|||||++.+..
T Consensus        30 ~Ge~~~iiG~sGsGKSTLl~~i~g   53 (230)
T d1l2ta_          30 EGEFVSIMGPSGSGKSTMLNIIGC   53 (230)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCcchhhHhccC
Confidence            457899999999999999998864

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=98.31  E-value=1.8e-07  Score=67.88  Aligned_cols=27  Identities=33%  Similarity=0.498  Sum_probs=23.1

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|+|++|+|||||++.+...+.
T Consensus        28 ~Ge~vaIvG~sGsGKSTLl~ll~gl~~   54 (241)
T d2pmka1          28 QGEVIGIVGRSGSGKSTLTKLIQRFYI   54 (241)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            447899999999999999999976543

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=98.27  E-value=1.1e-06  Score=63.54  Aligned_cols=50  Identities=14%  Similarity=0.125  Sum_probs=32.4

Q ss_pred             CCeEEEEEeCCCCcccc---cccCcCCCC--CCCCcEEEEEecChHHHhhcCCCC
Q 035585          125 EKMILVILDNIWKYLDL---ETVGIPFGD--DHRGCKLLLTARDCNVLLNMSLCR  174 (183)
Q Consensus       125 ~~~~llvlD~~~~~~~~---~~l~~~~~~--~~~~~~iiitsr~~~~~~~~~~~~  174 (183)
                      .++-+|++||.....+.   ..+...+..  ...|..+|++|||.+.+..+....
T Consensus       156 ~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv  210 (240)
T d1g2912         156 RKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRI  210 (240)
T ss_dssp             TCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEE
T ss_pred             cCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEE
Confidence            78899999998755331   111122211  123778999999999888765543

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.27  E-value=1.8e-07  Score=68.29  Aligned_cols=27  Identities=26%  Similarity=0.339  Sum_probs=23.0

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++|+|++|+|||||++.+...+.
T Consensus        40 ~Ge~iaivG~sGsGKSTLl~ll~gl~~   66 (253)
T d3b60a1          40 AGKTVALVGRSGSGKSTIASLITRFYD   66 (253)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcccC
Confidence            457899999999999999999976543

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.27  E-value=2.8e-07  Score=67.28  Aligned_cols=27  Identities=33%  Similarity=0.400  Sum_probs=22.4

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      .+...++|+|++|+|||||++.+...+
T Consensus        42 ~~Ge~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          42 EKGETVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             CTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHhcC
Confidence            345789999999999999999986433

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.26  E-value=3.1e-06  Score=59.96  Aligned_cols=60  Identities=22%  Similarity=0.222  Sum_probs=42.8

Q ss_pred             cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC-cCHHHHHHHHHHHhCCC
Q 035585           44 DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT-PDIKKIHGEIAEKLGLE  105 (183)
Q Consensus        44 ~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~l~~~  105 (183)
                      ..++.+++++|++|+||||.+..++.++..+  ...+..+.+... ..-.+.++..++.++..
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~--~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~   68 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE--GKSVVLAAADTFRAAAIEQLKIWGERVGAT   68 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEECTTCHHHHHHHHHHHHHHTCE
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHC--CCceEEEeecccccchhHHHHHHhhhcCcc
Confidence            3566789999999999998888888877654  345777777654 34455666666666543

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.25  E-value=1.7e-07  Score=67.77  Aligned_cols=50  Identities=10%  Similarity=0.040  Sum_probs=32.2

Q ss_pred             CCeEEEEEeCCCCccc---ccccCcCCCC--CCCCcEEEEEecChHHHhhcCCCC
Q 035585          125 EKMILVILDNIWKYLD---LETVGIPFGD--DHRGCKLLLTARDCNVLLNMSLCR  174 (183)
Q Consensus       125 ~~~~llvlD~~~~~~~---~~~l~~~~~~--~~~~~~iiitsr~~~~~~~~~~~~  174 (183)
                      .++-+|++||.-...+   -..+...+..  ...|..+|++|||...+..++...
T Consensus       153 ~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri  207 (239)
T d1v43a3         153 VEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRI  207 (239)
T ss_dssp             TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEE
T ss_pred             cCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEE
Confidence            7888999999875533   1111111111  122778999999999988766543

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.24  E-value=3.5e-06  Score=59.59  Aligned_cols=59  Identities=15%  Similarity=0.171  Sum_probs=36.7

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC-cCHHHHHHHHHHHhCCC
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT-PDIKKIHGEIAEKLGLE  105 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~l~~~  105 (183)
                      ..+.++.++|++|+||||.+..++..+..+  -..+..+.+... ..-.+.++..++.++.+
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~~--g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~   69 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFYKKK--GFKVGLVGADVYRPAALEQLQQLGQQIGVP   69 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHHHHT--TCCEEEEECCCSSHHHHHHHHHHHHHHTCC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHC--CCceEEEEeeccccchhHHHHHhccccCcc
Confidence            457889999999999999888888877654  234666666543 23344555566666544

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=6.6e-07  Score=65.20  Aligned_cols=27  Identities=19%  Similarity=0.239  Sum_probs=23.0

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      .+...++|+|++|+|||||++.+...+
T Consensus        38 ~~Ge~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          38 RPGEVTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhccc
Confidence            345789999999999999999997544

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.22  E-value=9.9e-07  Score=60.04  Aligned_cols=38  Identities=11%  Similarity=0.042  Sum_probs=29.4

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEE
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFS   83 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~   83 (183)
                      .+..+|+|+|++|+||||+++.++.++... ++....+.
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L~~~-~~~~~~~~   41 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTLNQQ-GGRSVSLL   41 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHH-CSSCEEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhc-CCCchhhh
Confidence            345688999999999999999999998765 33334443

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=98.21  E-value=1.1e-06  Score=66.05  Aligned_cols=106  Identities=16%  Similarity=0.216  Sum_probs=57.8

Q ss_pred             ccccchHHHHHHHHHHhc-------c-CCc-cEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHH
Q 035585           26 EAFKSRLSTLKSIQDALT-------D-VNV-NIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHG   96 (183)
Q Consensus        26 ~~~~gR~~~l~~l~~~l~-------~-~~~-~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (183)
                      ..++|.+..++.+.+.+.       + .++ .+++++||+|+|||.+|+.++..+...  ....+.++++.-...... .
T Consensus        23 ~~v~GQ~~ai~~v~~~i~~~~~~l~~~~kp~~~~lf~Gp~G~GKt~lak~la~~l~~~--~~~~~~~~~~~~~~~~~~-~   99 (315)
T d1qvra3          23 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTEYMEKHAV-S   99 (315)
T ss_dssp             HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSS--GGGEEEECTTTCCSSGGG-G
T ss_pred             CeEeCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCcchHHHHHHHHHHHhcCC--CcceEEEeccccccchhh-h
Confidence            356788877777766543       1 222 367889999999999999999987432  123344455433221110 0


Q ss_pred             HHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585           97 EIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY  138 (183)
Q Consensus        97 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~  138 (183)
                      .    +....++-........+.+.+.....-+++|||++..
T Consensus       100 ~----L~g~~~gyvG~~~~~~l~~~~~~~p~~Vvl~DEieK~  137 (315)
T d1qvra3         100 R----LIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKA  137 (315)
T ss_dssp             G----C--------------CHHHHHHHCSSEEEEESSGGGS
T ss_pred             h----hcCCCCCCcCcccCChHHHHHHhCCCcEEEEehHhhc
Confidence            1    1111111000111123445555577889999999865

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.20  E-value=4.1e-06  Score=59.13  Aligned_cols=58  Identities=21%  Similarity=0.268  Sum_probs=40.1

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC-cCHHHHHHHHHHHhCCC
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT-PDIKKIHGEIAEKLGLE  105 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~l~~~  105 (183)
                      ...++.++|++|+||||.+..++..+..+  ...+..+.+... ....+.++...+.++.+
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~~~--g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~   67 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAADTQRPAAREQLRLLGEKVGVP   67 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHT--TCCEEEEECCSSCHHHHHHHHHHHHHHTCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHC--CCcEEEEecccccchHHHHHHHHHHhcCCc
Confidence            45788999999999999999888888754  234666666543 33445556666666543

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=98.19  E-value=1.5e-06  Score=62.77  Aligned_cols=49  Identities=16%  Similarity=0.141  Sum_probs=32.0

Q ss_pred             cCCeEEEEEeCCCCccc------ccccCcCCCCCCCCcEEEEEecChHHHhhcCCCC
Q 035585          124 KEKMILVILDNIWKYLD------LETVGIPFGDDHRGCKLLLTARDCNVLLNMSLCR  174 (183)
Q Consensus       124 ~~~~~llvlD~~~~~~~------~~~l~~~~~~~~~~~~iiitsr~~~~~~~~~~~~  174 (183)
                      ..++-+|++||.....+      +..+...+.  ..|..|+++||+...+..+....
T Consensus       155 ~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~--~~g~til~~tH~l~~~~~~~drv  209 (240)
T d1ji0a_         155 MSRPKLLMMDEPSLGLAPILVSEVFEVIQKIN--QEGTTILLVEQNALGALKVAHYG  209 (240)
T ss_dssp             TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHH--HTTCCEEEEESCHHHHHHHCSEE
T ss_pred             HhCCCEeeecCCCcCCCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHHhCCEE
Confidence            37888999999875533      112222222  23778999999988777665543

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=98.18  E-value=7.1e-07  Score=64.46  Aligned_cols=50  Identities=18%  Similarity=0.264  Sum_probs=31.6

Q ss_pred             CCeEEEEEeCCCCccc---ccccCcCCCC--CCCCcEEEEEecChHHHhhcCCCC
Q 035585          125 EKMILVILDNIWKYLD---LETVGIPFGD--DHRGCKLLLTARDCNVLLNMSLCR  174 (183)
Q Consensus       125 ~~~~llvlD~~~~~~~---~~~l~~~~~~--~~~~~~iiitsr~~~~~~~~~~~~  174 (183)
                      .++-+|++||.-...+   ...+...+..  ...|..+|++|||..++..+....
T Consensus       157 ~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri  211 (240)
T d3dhwc1         157 SNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCV  211 (240)
T ss_dssp             TCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEE
T ss_pred             cCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEE
Confidence            7888999999764432   1111111111  223778999999999988766543

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.17  E-value=1.9e-06  Score=64.81  Aligned_cols=106  Identities=14%  Similarity=0.128  Sum_probs=61.4

Q ss_pred             CCcccccchHHHHHHHHHHhc---------cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHH
Q 035585           23 KGYEAFKSRLSTLKSIQDALT---------DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKK   93 (183)
Q Consensus        23 ~~~~~~~gR~~~l~~l~~~l~---------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (183)
                      ......+|-+..++.+...+.         +.+..+++++||+|+|||.||+.++..+..     ..+-++++.-.....
T Consensus        19 ~L~~~viGQ~~a~~~v~~~v~~~~~~l~~~~~p~~~~lf~Gp~GvGKT~lak~la~~l~~-----~~i~~d~s~~~~~~~   93 (315)
T d1r6bx3          19 RLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI-----ELLRFDMSEYMERHT   93 (315)
T ss_dssp             HHTTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTC-----EEEEEEGGGCSSSSC
T ss_pred             HhCCeecChHHHHHHHHHHHHHHHccCCCCCCCceEEEEECCCcchhHHHHHHHHhhccC-----CeeEeccccccchhh
Confidence            344567888888888876553         223347889999999999999999987542     334455543221100


Q ss_pred             HHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 035585           94 IHGEIAEKLGLEFSEEAESRRASRLYERLKKEKMILVILDNIWKY  138 (183)
Q Consensus        94 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~llvlD~~~~~  138 (183)
                           ...+....++.........+...+.....-+++|||++..
T Consensus        94 -----~~~l~g~~~gy~g~~~~~~l~~~~~~~~~~vvl~DeieKa  133 (315)
T d1r6bx3          94 -----VSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA  133 (315)
T ss_dssp             -----CSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGS
T ss_pred             -----hhhhcccCCCccccccCChhhHHHHhCccchhhhcccccc
Confidence                 0112222222111111122333444577789999999865

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.17  E-value=8e-07  Score=60.11  Aligned_cols=27  Identities=26%  Similarity=0.401  Sum_probs=25.1

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      ++++|+|++|+|||||++.+...+..+
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~l~~~   29 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPALCAR   29 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHC
Confidence            689999999999999999999988775

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=1.1e-06  Score=59.98  Aligned_cols=27  Identities=30%  Similarity=0.362  Sum_probs=24.2

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      +.|+|+|++|+|||||++.++..+...
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~~~   28 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLKSS   28 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHHHT
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence            568999999999999999999988654

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.13  E-value=2.2e-06  Score=62.50  Aligned_cols=27  Identities=22%  Similarity=0.334  Sum_probs=23.0

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +..+++|.|++|+|||||++.+...++
T Consensus        29 ~Gei~~liG~nGaGKSTLl~~i~Gl~~   55 (254)
T d1g6ha_          29 KGDVTLIIGPNGSGKSTLINVITGFLK   55 (254)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHCCCc
Confidence            446899999999999999999976543

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=98.13  E-value=2.9e-06  Score=60.69  Aligned_cols=26  Identities=23%  Similarity=0.243  Sum_probs=22.8

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +..+++|.|++|+|||||++.+....
T Consensus        25 ~Ge~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          25 SGEYFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            45789999999999999999998654

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.12  E-value=5.1e-06  Score=60.58  Aligned_cols=48  Identities=10%  Similarity=0.137  Sum_probs=32.1

Q ss_pred             CCeEEEEEeCCCCccc------ccccCcCCCCCCCCcEEEEEecChHHHhhcCCCC
Q 035585          125 EKMILVILDNIWKYLD------LETVGIPFGDDHRGCKLLLTARDCNVLLNMSLCR  174 (183)
Q Consensus       125 ~~~~llvlD~~~~~~~------~~~l~~~~~~~~~~~~iiitsr~~~~~~~~~~~~  174 (183)
                      .++-+|++||.....+      +..+...+..  .|..++++|||...+..+....
T Consensus       166 ~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~--~g~til~vtHdl~~~~~~adri  219 (258)
T d1b0ua_         166 MEPDVLLFDEPTSALDPELVGEVLRIMQQLAE--EGKTMVVVTHEMGFARHVSSHV  219 (258)
T ss_dssp             TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH--TTCCEEEECSCHHHHHHHCSEE
T ss_pred             cCCCEEEeccccccCCHHHHHHHHHhhhhhcc--cCCceEEEeCCHHHHHHhCCEE
Confidence            7888999999875533      2122233322  3667999999999888766543

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.12  E-value=3.5e-06  Score=58.15  Aligned_cols=31  Identities=26%  Similarity=0.476  Sum_probs=26.3

Q ss_pred             cCCccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           44 DVNVNIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        44 ~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      ..++-+|+|.|++|+||||||+.+...+...
T Consensus        19 ~~~~~iIgI~G~~GSGKSTla~~L~~~l~~~   49 (198)
T d1rz3a_          19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ   49 (198)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhccc
Confidence            4455578899999999999999999888764

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=98.11  E-value=1.5e-05  Score=58.30  Aligned_cols=86  Identities=21%  Similarity=0.257  Sum_probs=57.4

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchh------HHHHHHHHHHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSE------EAESRRASRLY  119 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~~~  119 (183)
                      ..+++-|+|++|+|||+|+.+++......  -..++|++.....+..     +++.++.....      ...++.+..+-
T Consensus        56 ~g~itei~G~~~sGKT~l~l~~~~~aqk~--g~~v~yiDtE~~~~~~-----~a~~~Gvd~d~i~~~~~~~~E~~~~~~~  128 (268)
T d1xp8a1          56 RGRITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME  128 (268)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred             CceEEEEecCCccchHHHHHHHHHHHHhC--CCEEEEEECCccCCHH-----HHHHhCCCchhEEEEcCCCHHHHHHHHH
Confidence            45799999999999999999988876543  3458999988776653     45666654332      12222333333


Q ss_pred             HHHhcCCeEEEEEeCCCCc
Q 035585          120 ERLKKEKMILVILDNIWKY  138 (183)
Q Consensus       120 ~~~~~~~~~llvlD~~~~~  138 (183)
                      ....+....+||+|-+..+
T Consensus       129 ~l~~~~~~~liIiDSi~al  147 (268)
T d1xp8a1         129 LLVRSGAIDVVVVDSVAAL  147 (268)
T ss_dssp             HHHTTTCCSEEEEECTTTC
T ss_pred             HHHhcCCCcEEEEeccccc
Confidence            3334456779999988654

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=98.10  E-value=4.1e-06  Score=62.87  Aligned_cols=72  Identities=14%  Similarity=0.245  Sum_probs=42.6

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCC
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEK  126 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~  126 (183)
                      ..+++++||||+|||.||+.++........|   +.+..+.-.+              ...+.. ...+..++...+.  
T Consensus       123 ~g~~l~~G~pG~GKT~la~ala~~~~~~~~~---~~~~~~~~~~--------------~~~G~~-e~~~~~~f~~a~~--  182 (321)
T d1w44a_         123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKY---ATVRFGEPLS--------------GYNTDF-NVFVDDIARAMLQ--  182 (321)
T ss_dssp             SEEEEEECSSSSCHHHHHHHHHHHHHTTSCC---EEEEBSCSST--------------TCBCCH-HHHHHHHHHHHHH--
T ss_pred             CceEEEECCCCccHHHHHHHHHHHhcCCCCe---EEEEhhHhhh--------------cccchH-HHHHHHHHHHHhh--
Confidence            3456679999999999999999987643222   2233332211              111111 2233444444442  


Q ss_pred             eEEEEEeCCCCc
Q 035585          127 MILVILDNIWKY  138 (183)
Q Consensus       127 ~~llvlD~~~~~  138 (183)
                      +.+|+|||+|..
T Consensus       183 ~~ilf~DEid~~  194 (321)
T d1w44a_         183 HRVIVIDSLKNV  194 (321)
T ss_dssp             CSEEEEECCTTT
T ss_pred             ccEEEeehhhhh
Confidence            459999999865

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.09  E-value=1.2e-06  Score=59.32  Aligned_cols=29  Identities=28%  Similarity=0.439  Sum_probs=25.4

Q ss_pred             cCCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           44 DVNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        44 ~~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +...++++|.|++|+||||+++.+..++.
T Consensus         3 ~~~~~iivl~G~~GsGKsT~a~~La~~l~   31 (171)
T d1knqa_           3 NHDHHIYVLMGVSGSGKSAVASEVAHQLH   31 (171)
T ss_dssp             CTTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35678999999999999999999998764

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.09  E-value=2.5e-06  Score=61.50  Aligned_cols=26  Identities=35%  Similarity=0.489  Sum_probs=22.7

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +..+++|.|++|+|||||++.+....
T Consensus        30 ~Ge~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          30 NGERFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            45789999999999999999998644

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.09  E-value=2.9e-05  Score=56.79  Aligned_cols=86  Identities=17%  Similarity=0.256  Sum_probs=56.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchh------HHHHHHHHHHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSE------EAESRRASRLY  119 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~~~  119 (183)
                      ..+++.++|++|+|||+|+.+++......  -..++|++.....+...     +++++.....      ...++....+-
T Consensus        59 ~g~i~e~~G~~~~GKT~l~l~~~~~~q~~--g~~~vyIDtE~~~~~e~-----a~~~GvD~d~il~~~~~~~E~~~~~~~  131 (269)
T d1mo6a1          59 RGRVIEIYGPESSGKTTVALHAVANAQAA--GGVAAFIDAEHALDPDY-----AKKLGVDTDSLLVSQPDTGEQALEIAD  131 (269)
T ss_dssp             SSSEEEEECSSSSSHHHHHHHHHHHHHHT--TCEEEEEESSCCCCHHH-----HHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred             cceeEEEecCCCcHHHHHHHHHHHHHhcC--CCEEEEEECCccCCHHH-----HHHhCCCHHHeEEecCCCHHHHHHHHH
Confidence            45789999999999999998888765554  34589999888766432     4445544322      12222333222


Q ss_pred             HHHhcCCeEEEEEeCCCCc
Q 035585          120 ERLKKEKMILVILDNIWKY  138 (183)
Q Consensus       120 ~~~~~~~~~llvlD~~~~~  138 (183)
                      ....+...-+||+|.+..+
T Consensus       132 ~l~~~~~~~liIiDSi~al  150 (269)
T d1mo6a1         132 MLIRSGALDIVVIDSVAAL  150 (269)
T ss_dssp             HHHHTTCEEEEEEECSTTC
T ss_pred             HHHhcCCCCEEEEeccccc
Confidence            3334567889999988654

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.07  E-value=2e-06  Score=62.57  Aligned_cols=29  Identities=21%  Similarity=0.185  Sum_probs=24.9

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      ..+..++++||+|+|||+||+.++..+..
T Consensus        30 ~~P~~ilL~GpPGtGKT~la~~la~~~~~   58 (273)
T d1gvnb_          30 ESPTAFLLGGQPGSGKTSLRSAIFEETQG   58 (273)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence            45567999999999999999999987653

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=98.07  E-value=3.1e-06  Score=60.82  Aligned_cols=25  Identities=32%  Similarity=0.460  Sum_probs=22.0

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      +..+++|.|++|+|||||++.+...
T Consensus        24 ~Gei~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          24 AGEILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             TTCEEECBCCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Confidence            4578999999999999999998763

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=98.05  E-value=1.8e-05  Score=57.73  Aligned_cols=86  Identities=21%  Similarity=0.273  Sum_probs=55.1

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchh------HHHHHHHHHHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSE------EAESRRASRLY  119 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~~~  119 (183)
                      ..+++.|+|++|+|||+|+.+++......  -..++|++........     .+..++.....      ...++.+..+.
T Consensus        53 ~g~itei~G~~gsGKTtl~l~~~~~~q~~--g~~~vyidtE~~~~~~-----~a~~~Gvd~d~v~~~~~~~~E~~~~~i~  125 (263)
T d1u94a1          53 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD  125 (263)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHHHHcC--CCEEEEEccccccCHH-----HHHHhCCCHHHEEEecCCCHHHHHHHHH
Confidence            44799999999999999999998877654  3458898888766542     34555544222      11222222222


Q ss_pred             HHHhcCCeEEEEEeCCCCc
Q 035585          120 ERLKKEKMILVILDNIWKY  138 (183)
Q Consensus       120 ~~~~~~~~~llvlD~~~~~  138 (183)
                      ........-++|+|.+..+
T Consensus       126 ~l~~~~~~~liViDSi~al  144 (263)
T d1u94a1         126 ALARSGAVDVIVVDSVAAL  144 (263)
T ss_dssp             HHHHHTCCSEEEEECGGGC
T ss_pred             HHHhcCCCCEEEEECcccc
Confidence            2233456678999987543

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.05  E-value=2.4e-05  Score=54.20  Aligned_cols=27  Identities=26%  Similarity=0.363  Sum_probs=23.9

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +..++++|.|++|+||||+|+.++.++
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            456789999999999999999998865

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.05  E-value=1.5e-05  Score=55.56  Aligned_cols=28  Identities=21%  Similarity=0.275  Sum_probs=24.3

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      +.+|+++|.+|+||||+|++++..+...
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~   29 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFI   29 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            4578999999999999999999877654

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.04  E-value=1.7e-06  Score=60.19  Aligned_cols=28  Identities=32%  Similarity=0.332  Sum_probs=24.6

Q ss_pred             cCCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           44 DVNVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        44 ~~~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      ...+.+|+|.|++|+||||+++.+++++
T Consensus         3 ~~kp~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           3 KSKPNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4567899999999999999999998865

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.03  E-value=1.3e-06  Score=59.65  Aligned_cols=26  Identities=27%  Similarity=0.383  Sum_probs=23.2

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .+.|+|.|++|+||||||+.++..+.
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~~   32 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVFN   32 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            46799999999999999999998764

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.03  E-value=1.9e-05  Score=55.36  Aligned_cols=27  Identities=41%  Similarity=0.545  Sum_probs=23.5

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +..+++|+|++|+|||||++.++..++
T Consensus        26 ~Gei~~l~G~NGsGKSTLl~~i~gl~~   52 (200)
T d1sgwa_          26 KGNVVNFHGPNGIGKTTLLKTISTYLK   52 (200)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcccc
Confidence            457899999999999999999987654

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.01  E-value=1.9e-06  Score=58.78  Aligned_cols=25  Identities=36%  Similarity=0.573  Sum_probs=22.6

Q ss_pred             EEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           50 VGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      |+|+|++|+|||||++.++..+...
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~~~   27 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLGKR   27 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred             EEEECCCCcHHHHHHHHHHhcCCCC
Confidence            7899999999999999999888653

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=98.01  E-value=1.5e-06  Score=58.79  Aligned_cols=25  Identities=40%  Similarity=0.514  Sum_probs=22.1

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +.++|+|++|+||||+++.++.++.
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~l~   29 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASKSG   29 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHC
Confidence            5678999999999999999988764

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=98.01  E-value=1.4e-06  Score=58.28  Aligned_cols=25  Identities=28%  Similarity=0.382  Sum_probs=22.1

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +.|.|+|++|+||||+++.++.++.
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L~   27 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQLN   27 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC
Confidence            4678889999999999999998864

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=98.01  E-value=1.6e-06  Score=58.59  Aligned_cols=25  Identities=32%  Similarity=0.474  Sum_probs=22.2

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .+++|+|++|+||||+|+.+...+.
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~   27 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLD   27 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC
Confidence            5789999999999999999987654

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.99  E-value=2.1e-06  Score=57.04  Aligned_cols=23  Identities=35%  Similarity=0.556  Sum_probs=20.1

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      .+|.|+|++|+||||+|+.+...
T Consensus         3 klIii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            47889999999999999987654

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.98  E-value=3.3e-06  Score=57.18  Aligned_cols=28  Identities=36%  Similarity=0.450  Sum_probs=25.6

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHhhhh
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQASEEK   75 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~~   75 (183)
                      ++++|+|.+|+|||||+..+...+..+.
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~~g   29 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVREG   29 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHhCC
Confidence            5889999999999999999999998763

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.97  E-value=2.2e-06  Score=58.05  Aligned_cols=27  Identities=15%  Similarity=0.258  Sum_probs=24.0

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ..++|+|.|++|+||||+|+.+.+.+.
T Consensus         2 ~~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           2 TTRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            357899999999999999999998765

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.96  E-value=2.8e-05  Score=55.44  Aligned_cols=86  Identities=15%  Similarity=0.215  Sum_probs=52.6

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCC----------------chhH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLE----------------FSEE  109 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~----------------~~~~  109 (183)
                      +..++.|+|++|+|||+|+.+++......  ...+.|+.....  ...+.+.+ ..++..                ....
T Consensus        25 ~gsl~li~G~pGsGKT~l~~qia~~~~~~--~~~~~~is~e~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (242)
T d1tf7a2          25 KDSIILATGATGTGKTLLVSRFVENACAN--KERAILFAYEES--RAQLLRNA-YSWGMDFEEMERQNLLKIVCAYPESA   99 (242)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHHHHTT--TCCEEEEESSSC--HHHHHHHH-HTTSCCHHHHHHTTSEEECCCCGGGS
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHHh--ccccceeeccCC--HHHHHHHH-HHcCCChHHHhhcCceEEEEeecchh
Confidence            45789999999999999999999887654  445777766543  22222222 222111                0112


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEEeCCC
Q 035585          110 AESRRASRLYERLKKEKMILVILDNIW  136 (183)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~llvlD~~~  136 (183)
                      ........+...+...+.-++|+|.+.
T Consensus       100 ~~~~~~~~i~~~i~~~~~~~vviDs~~  126 (242)
T d1tf7a2         100 GLEDHLQIIKSEINDFKPARIAIDSLS  126 (242)
T ss_dssp             CHHHHHHHHHHHHHTTCCSEEEEECHH
T ss_pred             hHHHHHHHHHHHHHhcCCceeeeecch
Confidence            223334455555566777888999865

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.96  E-value=4.5e-06  Score=62.49  Aligned_cols=46  Identities=22%  Similarity=0.357  Sum_probs=34.1

Q ss_pred             cccchHHHHHHHHHHhc--------------cCCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           27 AFKSRLSTLKSIQDALT--------------DVNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        27 ~~~gR~~~l~~l~~~l~--------------~~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ..+|-++..+.+..+..              +.++..++++||+|+|||.||+.+++.+.
T Consensus        15 ~ViGQd~A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~~~~   74 (309)
T d1ofha_          15 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN   74 (309)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             cccChHHHHHHHHHHHHHHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhhccc
Confidence            45677777666654331              12557889999999999999999998754

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.91  E-value=2.3e-05  Score=55.21  Aligned_cols=33  Identities=24%  Similarity=0.319  Sum_probs=27.6

Q ss_pred             hccCCccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           42 LTDVNVNIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        42 l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      ..+.+..+|.++|.+|+||||+++.+..++...
T Consensus        19 ~~~~kg~vIwltGlsGsGKTTia~~L~~~l~~~   51 (208)
T d1m7ga_          19 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRD   51 (208)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred             HhCCCCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            335667899999999999999999999887543

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=3.7e-06  Score=58.01  Aligned_cols=28  Identities=25%  Similarity=0.232  Sum_probs=24.6

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      ..+|+|+|++|+||||+|+.+..++...
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~~l~~~   46 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEEYLVCH   46 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            4578899999999999999999988764

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.89  E-value=3.2e-06  Score=57.31  Aligned_cols=27  Identities=30%  Similarity=0.401  Sum_probs=23.2

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ..++|+|.|++|+||||+++.+..++.
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~lg   29 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLPG   29 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            457899999999999999999877643

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=97.86  E-value=1.6e-05  Score=58.15  Aligned_cols=52  Identities=21%  Similarity=0.349  Sum_probs=40.0

Q ss_pred             HHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585           34 TLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ   87 (183)
Q Consensus        34 ~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~   87 (183)
                      ++..+.+.+.+...+++.++|.||+||||++..++..+...  -..+..+++..
T Consensus         7 ~~~~~~~~~~~~~~~iii~sGKGGVGKTT~a~nLA~~lA~~--G~rVllvD~Dp   58 (279)
T d1ihua2           7 SLSALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLADM--GFDVHLTTSDP   58 (279)
T ss_dssp             CHHHHHHHHHTTSCEEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESCC
T ss_pred             cHHHHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHHHHC--CCcEEEEeCCC
Confidence            35566666667888999999999999999999998888765  23466666553

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.86  E-value=4.4e-06  Score=57.22  Aligned_cols=27  Identities=30%  Similarity=0.459  Sum_probs=23.0

Q ss_pred             cCCccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           44 DVNVNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        44 ~~~~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      ..++.+++++|++|+||||+++.++..
T Consensus        11 ~~~p~liil~G~pGsGKST~a~~l~~~   37 (172)
T d1yj5a2          11 SPNPEVVVAVGFPGAGKSTFIQEHLVS   37 (172)
T ss_dssp             CSSCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            456789999999999999999987654

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=97.85  E-value=1.1e-05  Score=61.51  Aligned_cols=131  Identities=12%  Similarity=0.060  Sum_probs=65.8

Q ss_pred             HHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhh-cccceEEEEecCCcCHHHHHHHHHHH---hCCC----
Q 035585           34 TLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEK-LFDQVVFSEVSQTPDIKKIHGEIAEK---LGLE----  105 (183)
Q Consensus        34 ~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~---l~~~----  105 (183)
                      +...+...+.   .++++|+|++|+||||++..+...+.... .....+.+..+++.....+...+...   +...    
T Consensus       153 Q~~A~~~al~---~~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~ApTgkAA~~L~e~~~~~~~~~~~~~~~~  229 (359)
T d1w36d1         153 QKVAAAVALT---RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQK  229 (359)
T ss_dssp             HHHHHHHHHT---BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCSCCC
T ss_pred             HHHHHHHHHc---CCeEEEEcCCCCCceehHHHHHHHHHHHHhccCCeEEEecCcHHHHHHHHHHHHHHHhhcCchhhhh
Confidence            3334444442   37999999999999999887766554321 12335677777766555544444222   1100    


Q ss_pred             --ch--hHH-----HHHHHHHHHHHHh--cCCeEEEEEeCCCCcccccccCcCCCCCCCCcEEEEEecChHHHh
Q 035585          106 --FS--EEA-----ESRRASRLYERLK--KEKMILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNVLL  168 (183)
Q Consensus       106 --~~--~~~-----~~~~~~~~~~~~~--~~~~~llvlD~~~~~~~~~~l~~~~~~~~~~~~iiitsr~~~~~~  168 (183)
                        .+  ...     ........+.+..  ...--++|+||+.-.+ ...+...+.....++++|++--..++..
T Consensus       230 ~~~~~~~~t~~~ll~~~~~~~~~~~~~~~~l~~d~lIIDEaSmv~-~~l~~~ll~~~~~~~~lILvGD~~QLpp  302 (359)
T d1w36d1         230 KRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMID-LPMMSRLIDALPDHARVIFLGDRDQLAS  302 (359)
T ss_dssp             CSCSCCCBTTTSCC-----------CTTSCCSCSEEEECSGGGCB-HHHHHHHHHTCCTTCEEEEEECTTSGGG
T ss_pred             hhhhhhhhHHHHHHhhhhcchHHHHhhhcccccceeeehhhhccC-HHHHHHHHHHhcCCCEEEEECChhhccC
Confidence              00  000     0000000011111  0133599999986442 1122222233345788998887766644

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.83  E-value=5.7e-06  Score=55.95  Aligned_cols=26  Identities=23%  Similarity=0.272  Sum_probs=22.5

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .-.|+|.|++|+||||+++.+..++.
T Consensus         5 ~~~I~i~G~~GsGKTT~~~~La~~l~   30 (174)
T d1y63a_           5 GINILITGTPGTGKTSMAEMIAAELD   30 (174)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence            34689999999999999999998754

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.82  E-value=6.5e-06  Score=56.11  Aligned_cols=27  Identities=30%  Similarity=0.370  Sum_probs=24.7

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      ++|+|.|++|+||||+++.+...+...
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~   28 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKE   28 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            589999999999999999999988765

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=97.78  E-value=6.7e-06  Score=61.97  Aligned_cols=50  Identities=22%  Similarity=0.205  Sum_probs=37.7

Q ss_pred             CCCcccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           22 NKGYEAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        22 ~~~~~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      .-+....+|.+.....|.-.......+.++|.|++|+|||+||+.+..-+
T Consensus         3 ~~~f~~I~Gq~~~kral~laa~~~~~h~vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_           3 VFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             CCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred             CCChhhccCcHHHHHHHHHHHhccCCCeEEEECCCCccHHHHHHHHHHhC
Confidence            34566789998777666544433344679999999999999999998654

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=9.2e-06  Score=56.23  Aligned_cols=25  Identities=28%  Similarity=0.236  Sum_probs=22.3

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +.+|+|.|++|+||||.|+.+++++
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            3578999999999999999999865

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.73  E-value=1e-05  Score=56.93  Aligned_cols=26  Identities=31%  Similarity=0.470  Sum_probs=23.5

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .++|+|.||+|+||||+++.+++++.
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~~~g   28 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAEALQ   28 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            46899999999999999999998874

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.73  E-value=3.6e-05  Score=57.80  Aligned_cols=42  Identities=19%  Similarity=0.239  Sum_probs=30.7

Q ss_pred             cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEe
Q 035585           44 DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEV   85 (183)
Q Consensus        44 ~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~   85 (183)
                      ..+...++|+|+||+|||||+..+...+........++-++.
T Consensus        48 ~~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDp   89 (323)
T d2qm8a1          48 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDP   89 (323)
T ss_dssp             CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECG
T ss_pred             cCCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeeccc
Confidence            456788999999999999999999987665433333444433

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.72  E-value=9e-06  Score=54.97  Aligned_cols=24  Identities=25%  Similarity=0.428  Sum_probs=20.6

Q ss_pred             EEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           50 VGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      +.++|++|+||||+++.++.++.-
T Consensus         4 IvliG~~G~GKSTig~~La~~l~~   27 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKALGV   27 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC
Confidence            556699999999999999988754

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.70  E-value=4.3e-05  Score=57.41  Aligned_cols=31  Identities=32%  Similarity=0.388  Sum_probs=27.3

Q ss_pred             cCCccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           44 DVNVNIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        44 ~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      ..+...|+|+|+||+|||||+..+...+...
T Consensus        51 ~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~   81 (327)
T d2p67a1          51 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE   81 (327)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred             cCCceEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence            4567889999999999999999999887765

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.69  E-value=1.3e-05  Score=55.37  Aligned_cols=25  Identities=20%  Similarity=0.094  Sum_probs=21.6

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      -.|+|.|++|+||||+++.+++++.
T Consensus         4 m~I~i~GppGsGKsT~a~~La~~~~   28 (189)
T d1zaka1           4 LKVMISGAPASGKGTQCELIKTKYQ   28 (189)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHC
Confidence            4577999999999999999988764

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.67  E-value=1.3e-05  Score=54.00  Aligned_cols=25  Identities=28%  Similarity=0.414  Sum_probs=21.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           49 IVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      .++|+|++|+||||+++.++.++.-
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l~~   26 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDLDL   26 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3778899999999999999998743

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.67  E-value=8.8e-05  Score=52.18  Aligned_cols=41  Identities=24%  Similarity=0.212  Sum_probs=28.8

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ   87 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~   87 (183)
                      +..++.|+|++|+|||+|+.+++...... ....+.|+....
T Consensus        25 ~G~~~~I~G~~G~GKT~la~~~~~~~~~~-~~~~~~~~s~e~   65 (242)
T d1tf7a1          25 IGRSTLVSGTSGTGKTLFSIQFLYNGIIE-FDEPGVFVTFEE   65 (242)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSS
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHHh-cCCCcccccccC
Confidence            45789999999999999998877654332 122456655543

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.67  E-value=1.2e-05  Score=54.61  Aligned_cols=25  Identities=32%  Similarity=0.356  Sum_probs=21.6

Q ss_pred             EEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           49 IVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      .+.|+|++|+||||+++.+++++.-
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~Lg~   28 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARALGY   28 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4668899999999999999988753

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.66  E-value=9.4e-05  Score=52.91  Aligned_cols=110  Identities=14%  Similarity=0.134  Sum_probs=55.9

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHh--hhhccc----------ceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHH
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQAS--EEKLFD----------QVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAES  112 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~--~~~~~~----------~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~  112 (183)
                      ...+++.|+|++..||||+++.+.-..-  .-..|.          ..++..+....++..-...+.          .+.
T Consensus        39 ~~~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~VpA~~a~~~~~d~I~~~~~~~d~~~~~~S~F~----------~E~  108 (234)
T d1wb9a2          39 PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFM----------VEM  108 (234)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEEEEEEC-----------CH----------HHH
T ss_pred             CCceEEEEeccCchhhHHHHHHHHHHHHHHHcCCeEecCceecccchhheeEEccCcccccchhHHH----------HHH
Confidence            3457899999999999999999865431  111111          123444443333221111111          111


Q ss_pred             HHHHHHHHHHhcCCeEEEEEeCCCCccc--------ccccCcCCCCCCCCcEEEEEecChHHHh
Q 035585          113 RRASRLYERLKKEKMILVILDNIWKYLD--------LETVGIPFGDDHRGCKLLLTARDCNVLL  168 (183)
Q Consensus       113 ~~~~~~~~~~~~~~~~llvlD~~~~~~~--------~~~l~~~~~~~~~~~~iiitsr~~~~~~  168 (183)
                      ..+..++..  ..++.|+++||+-....        +..+ ..+ ....++.+++|||...+..
T Consensus       109 ~~~~~il~~--~~~~sLvliDE~~~gT~~~eg~~l~~a~l-~~l-~~~~~~~~i~tTH~~~l~~  168 (234)
T d1wb9a2         109 TETANILHN--ATEYSLVLMDEIGRGTSTYDGLSLAWACA-ENL-ANKIKALTLFATHYFELTQ  168 (234)
T ss_dssp             HHHHHHHHH--CCTTEEEEEESCCCCSSSSHHHHHHHHHH-HHH-HHTTCCEEEEECSCGGGGG
T ss_pred             HHHHHHHHh--cccccEEeecccccCCChhhhhHHHHHhh-hhh-hccccceEEEecchHHHhh
Confidence            112222222  36788999999864421        1111 112 1224668999999877654

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.66  E-value=0.00017  Score=53.60  Aligned_cols=29  Identities=21%  Similarity=0.235  Sum_probs=25.0

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      ..+-+|+|.|++|+||||+++.+...+..
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~lL~~  106 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQALLSR  106 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTT
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHHHHhh
Confidence            34568999999999999999999988764

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.66  E-value=1.6e-05  Score=55.16  Aligned_cols=26  Identities=27%  Similarity=0.322  Sum_probs=22.9

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      .+.+|+|.|++|+||||+++.++.++
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            35789999999999999999998864

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.65  E-value=1.9e-05  Score=53.98  Aligned_cols=27  Identities=26%  Similarity=0.421  Sum_probs=24.4

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      .+++|.|++|+||||+++.+...+...
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~~   28 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDNQ   28 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            578899999999999999999988765

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.64  E-value=0.00025  Score=51.73  Aligned_cols=92  Identities=21%  Similarity=0.327  Sum_probs=56.5

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC-cCHHHHHHHHHHHhC-----------------CCch
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT-PDIKKIHGEIAEKLG-----------------LEFS  107 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~l~-----------------~~~~  107 (183)
                      +.+-++|.|.+|+|||+|+..++...... .-+.++|+-+... ....++...+.+.-.                 ...+
T Consensus        67 kGQr~~If~~~g~GKt~l~~~i~~~~~~~-~~~v~V~~~iGer~~ev~~~~~~~~~~~~~~~~~~~~~tvvv~~~s~~~~  145 (276)
T d2jdid3          67 KGGKIGLFGGAGVGKTVLIMELINNVAKA-HGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPP  145 (276)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHHTTT-CSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSCH
T ss_pred             CCCEEEeeCCCCCCHHHHHHHHHHHHHhh-CCCeEEEEEeccChHHHHHHHHHHHhcCccccccccceEEEEEECCCCCH
Confidence            44669999999999999999998775433 2334566655544 456667777765311                 0111


Q ss_pred             hHH--HHHHHHHHHHHHh-c-CCeEEEEEeCCCCc
Q 035585          108 EEA--ESRRASRLYERLK-K-EKMILVILDNIWKY  138 (183)
Q Consensus       108 ~~~--~~~~~~~~~~~~~-~-~~~~llvlD~~~~~  138 (183)
                      ...  .......+-++++ + ++.+||++|++...
T Consensus       146 ~~r~~~~~~a~~iAEyf~~~~G~~VLv~~Dsltr~  180 (276)
T d2jdid3         146 GARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRF  180 (276)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCeEEEEEcchhHH
Confidence            111  1111234456665 3 78999999998633

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.64  E-value=1.6e-05  Score=54.27  Aligned_cols=22  Identities=23%  Similarity=0.363  Sum_probs=20.2

Q ss_pred             EEEEeCCCCcHHHHHHHHHhHH
Q 035585           50 VGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      |+|.|++|+||||+++.++.++
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6799999999999999998876

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=2.1e-05  Score=55.28  Aligned_cols=28  Identities=18%  Similarity=0.335  Sum_probs=24.4

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      +-+|+|.|++|+||||+++.+...+...
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~l~~~   29 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQLLGQN   29 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence            4578999999999999999999887654

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=97.61  E-value=6.9e-05  Score=54.87  Aligned_cols=41  Identities=22%  Similarity=0.244  Sum_probs=31.8

Q ss_pred             cCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEec
Q 035585           44 DVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVS   86 (183)
Q Consensus        44 ~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~   86 (183)
                      ...++++.+.|.||+||||++..++..+..+  -..+..+++.
T Consensus         5 ~~~p~~i~~sGKGGVGKTTvaa~lA~~lA~~--G~rVLlvD~D   45 (296)
T d1ihua1           5 QNIPPYLFFTGKGGVGKTSISCATAIRLAEQ--GKRVLLVSTD   45 (296)
T ss_dssp             SSCCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred             CCCCeEEEEECCCcChHHHHHHHHHHHHHHC--CCCEEEEeCC
Confidence            3457889999999999999999999888765  2345555554

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.59  E-value=0.00023  Score=52.30  Aligned_cols=57  Identities=11%  Similarity=-0.003  Sum_probs=36.2

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcc-cceEEEEecCCcCHHHHHHHHHHH
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQASEEKLF-DQVVFSEVSQTPDIKKIHGEIAEK  101 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~  101 (183)
                      .++-+|+|.|+.|+|||||+..+...+...... ..+..+.+..-.-..+-...+.+.
T Consensus        25 ~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~DdfY~t~~~r~~L~~~   82 (286)
T d1odfa_          25 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQ   82 (286)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHH
T ss_pred             CCCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCCCCCHHHHHHHhhh
Confidence            344588999999999999999998887665322 235555554433323333444444

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.56  E-value=2.4e-05  Score=53.52  Aligned_cols=24  Identities=29%  Similarity=0.300  Sum_probs=21.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           49 IVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .++|.|++|+||||+++.++..+.
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~g   25 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKLG   25 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            367889999999999999998763

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.56  E-value=2.4e-05  Score=53.58  Aligned_cols=23  Identities=22%  Similarity=0.390  Sum_probs=20.6

Q ss_pred             EEEEeCCCCcHHHHHHHHHhHHh
Q 035585           50 VGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      |+|.|++|+||||+++.++.++.
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~g   25 (182)
T d1s3ga1           3 IVLMGLPGAGKGTQADRIVEKYG   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Confidence            67899999999999999998763

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.55  E-value=0.00042  Score=49.06  Aligned_cols=106  Identities=15%  Similarity=0.198  Sum_probs=54.7

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHH--hhhhccc----------ceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQA--SEEKLFD----------QVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRA  115 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~--~~~~~~~----------~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~  115 (183)
                      +++.|+||+..||||+++.+.-..  ..-..+.          ..++..+....+...-...+          ..+....
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~l~~ilAq~G~~vpA~~~~i~~~d~I~~~~~~~d~~~~~~StF----------~~el~~~  105 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTF----------MVEMEEV  105 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEEEECCC------CCSHH----------HHHHHHH
T ss_pred             cEEEEECCCccccchhhhhhHHHHHHHhccceeecCceEEeecceEEEEECCCccccCCccHH----------HHhHHHH
Confidence            578999999999999999986433  1111111          12333443332221100000          1111112


Q ss_pred             HHHHHHHhcCCeEEEEEeCCCCccc--------ccccCcCCCCCCCCcEEEEEecChHHHh
Q 035585          116 SRLYERLKKEKMILVILDNIWKYLD--------LETVGIPFGDDHRGCKLLLTARDCNVLL  168 (183)
Q Consensus       116 ~~~~~~~~~~~~~llvlD~~~~~~~--------~~~l~~~~~~~~~~~~iiitsr~~~~~~  168 (183)
                      ..++..  .+++.|+++||+-....        +.-+ ..+.  ..++.+++|||-.++..
T Consensus       106 ~~il~~--~~~~sLvliDE~~~gT~~~eg~ala~ail-e~L~--~~~~~~i~tTH~~eL~~  161 (224)
T d1ewqa2         106 ALILKE--ATENSLVLLDEVGRGTSSLDGVAIATAVA-EALH--ERRAYTLFATHYFELTA  161 (224)
T ss_dssp             HHHHHH--CCTTEEEEEESTTTTSCHHHHHHHHHHHH-HHHH--HHTCEEEEECCCHHHHT
T ss_pred             HHHhcc--CCCCcEEeecccccCcchhhhcchHHHHH-HHHh--hcCcceEEeeechhhhh
Confidence            223322  26789999999875421        1111 2221  13678999999888755

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=97.52  E-value=5.4e-05  Score=49.21  Aligned_cols=51  Identities=12%  Similarity=0.031  Sum_probs=30.9

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKL  102 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l  102 (183)
                      ..+...|+++.|+|||+++-.++.+      ....+.+-++......+....+.+.+
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~~~~------~~~~vli~~P~~~l~~q~~~~~~~~~   57 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAAYAA------QGYKVLVLNPSVAATLGFGAYMSKAH   57 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHHHHT------TTCCEEEEESCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHH------cCCcEEEEcChHHHHHHHHHHHHHHh
Confidence            4578899999999999887655432      22234444554444444444444444

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.51  E-value=0.00014  Score=51.47  Aligned_cols=90  Identities=16%  Similarity=0.257  Sum_probs=49.7

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhh----cccceEEEEecCCcCHHHHHHHHHHHhCCCchh-------------
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEK----LFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSE-------------  108 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-------------  108 (183)
                      +..++.|+|++|+|||+|+.+++.......    ....++|++........... .....++.....             
T Consensus        33 ~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  111 (251)
T d1szpa2          33 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGLDPDDALNNVAYARAYNA  111 (251)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSSCCCGGGGH-HHHHHTCCCHHHHGGGEEEEECCST
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhhhhhhhccCCceEEEEeecchHHHHHHH-HHHHhcCCchhhhhcceEEEeccch
Confidence            446999999999999999999876543211    12346777766554332222 222222221110             


Q ss_pred             HHHHHHHHHHHHHHhcCCeEEEEEeCCC
Q 035585          109 EAESRRASRLYERLKKEKMILVILDNIW  136 (183)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~llvlD~~~  136 (183)
                      ....................++++|.+.
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~ds~~  139 (251)
T d1szpa2         112 DHQLRLLDAAAQMMSESRFSLIVVDSVM  139 (251)
T ss_dssp             TTHHHHHHHTHHHHHHSCEEEEEEETGG
T ss_pred             hHHHHHHHHHHHHhhccccceeeehhhh
Confidence            1111222333444445778888899864

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.50  E-value=2.9e-05  Score=53.22  Aligned_cols=25  Identities=24%  Similarity=0.444  Sum_probs=22.2

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .+++|+||+|+|||||++.+..++.
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCC
Confidence            5789999999999999999887754

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.50  E-value=3.3e-05  Score=54.36  Aligned_cols=24  Identities=25%  Similarity=0.371  Sum_probs=21.3

Q ss_pred             EEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           49 IVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .|+|-||+|+||||+|+.++.++.
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~lg   28 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDFG   28 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            577889999999999999998764

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.47  E-value=4.5e-05  Score=52.47  Aligned_cols=22  Identities=27%  Similarity=0.347  Sum_probs=19.2

Q ss_pred             EEEEeCCCCcHHHHHHHHHhHH
Q 035585           50 VGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +.|.|++|+||||+++.++.++
T Consensus         6 iil~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           6 AVLLGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            4468999999999999998875

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.47  E-value=3.8e-05  Score=52.36  Aligned_cols=23  Identities=17%  Similarity=0.122  Sum_probs=20.1

Q ss_pred             EEEEeCCCCcHHHHHHHHHhHHh
Q 035585           50 VGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ++|.|++|+||||+++.++.++.
T Consensus         3 I~i~G~pGSGKsT~~~~La~~~~   25 (179)
T d1e4va1           3 IILLGAPVAGKGTQAQFIMEKYG   25 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            56889999999999999987753

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.46  E-value=3.4e-05  Score=53.42  Aligned_cols=24  Identities=38%  Similarity=0.541  Sum_probs=21.4

Q ss_pred             EEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           50 VGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      |+|+||+|+|||||++.++.....
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~~   26 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHSS   26 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCC
Confidence            679999999999999999887654

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.46  E-value=3.7e-05  Score=52.55  Aligned_cols=23  Identities=22%  Similarity=0.277  Sum_probs=19.5

Q ss_pred             EEEEeCCCCcHHHHHHHHHhHHh
Q 035585           50 VGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ++|.|++|+||||+++.++.++.
T Consensus         5 Ivl~G~pGSGKtT~a~~La~~~g   27 (180)
T d1akya1           5 MVLIGPPGAGKGTQAPNLQERFH   27 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            44679999999999999988753

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=97.46  E-value=9.3e-05  Score=53.67  Aligned_cols=38  Identities=24%  Similarity=0.414  Sum_probs=31.5

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ   87 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~   87 (183)
                      +.|+|+|.||+||||++..+...+...  -..+..+++..
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA~~--G~rVllID~D~   39 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLHAM--GKTIMVVGCDP   39 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTT--TCCEEEEEECT
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHHhC--CCcEEEEecCC
Confidence            678899999999999999999998865  33577777764

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.43  E-value=4.8e-05  Score=52.59  Aligned_cols=24  Identities=21%  Similarity=0.320  Sum_probs=20.6

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      --+.|.|++|+||||+++.++.++
T Consensus         7 mrIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           7 LRAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHB
T ss_pred             eeEEEECCCCCCHHHHHHHHHHHH
Confidence            356778999999999999999864

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.43  E-value=3.3e-05  Score=53.22  Aligned_cols=26  Identities=27%  Similarity=0.450  Sum_probs=22.3

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      +-|+|+||+|+|||||++.++.+...
T Consensus         2 rpIvl~GpsG~GK~tl~~~L~~~~~~   27 (186)
T d1gkya_           2 RPIVISGPSGTGKSTLLKKLFAEYPD   27 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhCCc
Confidence            34789999999999999999887654

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=0.00044  Score=48.32  Aligned_cols=28  Identities=14%  Similarity=0.251  Sum_probs=25.0

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      ..+|+|-|+.|+||||+++.+.+.+...
T Consensus         3 G~lI~ieG~dGsGKsT~~~~L~~~L~~~   30 (209)
T d1nn5a_           3 GALIVLEGVDRAGKSTQSRKLVEALCAA   30 (209)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence            3578888999999999999999998876

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.38  E-value=0.0011  Score=46.42  Aligned_cols=28  Identities=18%  Similarity=0.283  Sum_probs=24.1

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      +..++.|.|++|+|||+++.+++.....
T Consensus        33 ~G~l~~i~G~~G~GKT~~~l~~a~~~~~   60 (258)
T d2i1qa2          33 SQSVTEFAGVFGSGKTQIMHQSCVNLQN   60 (258)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHTTC
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            4478999999999999999999876643

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.38  E-value=0.00019  Score=51.05  Aligned_cols=47  Identities=26%  Similarity=0.281  Sum_probs=33.9

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhh----cccceEEEEecCCcCHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEK----LFDQVVFSEVSQTPDIK   92 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~   92 (183)
                      ...++.|+|++|+|||+|+.+++.......    ....++|+.........
T Consensus        35 ~G~~~li~G~pGsGKT~~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (254)
T d1pzna2          35 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE   85 (254)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHhhchHHhcCCCceEEEEeccchhHHH
Confidence            446899999999999999999987664321    12347777776665543

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=97.37  E-value=0.00084  Score=48.53  Aligned_cols=41  Identities=22%  Similarity=0.276  Sum_probs=30.2

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ   87 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~   87 (183)
                      +..+++|.|++|+|||+++.+++.++... .-..+.|+.+..
T Consensus        34 ~G~l~vi~G~~G~GKT~~~~~la~~~a~~-~g~~v~~~s~E~   74 (277)
T d1cr2a_          34 GGEVIMVTSGSGMGKSTFVRQQALQWGTA-MGKKVGLAMLEE   74 (277)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHHHHHHT-SCCCEEEEESSS
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHhhhhh-cccceeEeeecc
Confidence            34689999999999999999998776443 123466766553

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.37  E-value=5.7e-05  Score=55.61  Aligned_cols=29  Identities=28%  Similarity=0.431  Sum_probs=22.6

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      +.++|+|.|.+|+||||+++.+.+.+...
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~~i~~~~   31 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFDQIFRRE   31 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHhhc
Confidence            45799999999999999999998887764

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.36  E-value=6.1e-05  Score=52.80  Aligned_cols=26  Identities=19%  Similarity=0.326  Sum_probs=22.8

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ..+++|+||+|+|||||++.+.....
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~~~p   27 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLKTQP   27 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            36889999999999999999988754

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=0.0018  Score=44.29  Aligned_cols=28  Identities=21%  Similarity=0.260  Sum_probs=24.0

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      +..++.|.|++|+|||+|+.+++.+...
T Consensus        22 ~G~v~~i~G~~GsGKT~l~l~la~~~~~   49 (242)
T d1n0wa_          22 TGSITEMFGEFRTGKTQICHTLAVTCQL   49 (242)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHHTTS
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            4578999999999999999999876644

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=97.33  E-value=0.00041  Score=50.85  Aligned_cols=30  Identities=17%  Similarity=0.051  Sum_probs=25.8

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      .+.+-.+|.|++|+|||+|+..+.......
T Consensus        41 grGQr~~I~g~~g~GKT~l~~~i~~~~~~~   70 (289)
T d1xpua3          41 GRGQRGLIVAPPKAGKTMLLQNIAQSIAYN   70 (289)
T ss_dssp             BTTCEEEEEECSSSSHHHHHHHHHHHHHHH
T ss_pred             cCCCeeeEeCCCCCCHHHHHHHHHHHHhhc
Confidence            455788999999999999999999877664

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=97.32  E-value=0.00019  Score=54.62  Aligned_cols=29  Identities=21%  Similarity=0.050  Sum_probs=25.4

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      ...+.++++||+|+|||++|+.+++.+..
T Consensus       152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~~  180 (362)
T d1svma_         152 PKKRYWLFKGPIDSGKTTLAAALLELCGG  180 (362)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred             CCcCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence            45578999999999999999999987664

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.31  E-value=0.00023  Score=51.17  Aligned_cols=44  Identities=16%  Similarity=0.274  Sum_probs=32.7

Q ss_pred             ccchHHHHHHHHHHhc--cCCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           28 FKSRLSTLKSIQDALT--DVNVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        28 ~~gR~~~l~~l~~~l~--~~~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      |+|....+..+.+.+.  .....-|+|+|++|+|||++|+.++..-
T Consensus         2 ~v~~S~~~~~~~~~~~~~a~~~~pvlI~Ge~GtGK~~~A~~ih~~s   47 (247)
T d1ny5a2           2 YVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLS   47 (247)
T ss_dssp             CCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             eEecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence            6777777777776655  2233457899999999999999998643

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.30  E-value=0.0002  Score=52.46  Aligned_cols=40  Identities=25%  Similarity=0.442  Sum_probs=32.0

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT   88 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~   88 (183)
                      .+.|+|+|.||+||||++..++..+...  -..++.+++...
T Consensus         2 Mr~IaisgKGGVGKTT~a~NLA~~LA~~--G~rVLlID~DpQ   41 (289)
T d2afhe1           2 MRQCAIYGKGGIGKSTTTQNLVAALAEM--GKKVMIVGCDPK   41 (289)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEEECSS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHHHHC--CCCEEEEecCCC
Confidence            4678889999999999999999988765  335777787643

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.30  E-value=0.00038  Score=48.42  Aligned_cols=40  Identities=20%  Similarity=0.290  Sum_probs=29.1

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ   87 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~   87 (183)
                      ...|+|-|+.|+||||+++.+.+.+.... +..+.+..-+.
T Consensus         2 gkfIviEG~dGsGKsT~~~~L~~~L~~~g-~~~~~~~~ep~   41 (210)
T d4tmka_           2 SKYIVIEGLEGAGKTTARNVVVETLEQLG-IRDMVFTREPG   41 (210)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHhCC-CCeEEEecCCC
Confidence            35788999999999999999999887652 23344433333

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=7.5e-05  Score=51.11  Aligned_cols=26  Identities=12%  Similarity=0.387  Sum_probs=22.4

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      +.++|+||+|+|||||++.+..+...
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~~~   29 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKHPD   29 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhCCc
Confidence            56889999999999999998876554

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.25  E-value=8.2e-05  Score=53.30  Aligned_cols=25  Identities=20%  Similarity=0.309  Sum_probs=22.0

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ..++|.||+|+|||||++.+...++
T Consensus        25 e~~~liGpnGaGKSTll~~i~Gl~~   49 (240)
T d2onka1          25 DYCVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEEECCCCChHHHHHHHHHcCCC
Confidence            5888999999999999999986553

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.24  E-value=0.0001  Score=52.22  Aligned_cols=25  Identities=48%  Similarity=0.639  Sum_probs=21.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           49 IVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      +++|.|+.|+|||||+..+.+....
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~~   26 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLED   26 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTT
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhh
Confidence            5889999999999999999876643

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.0035  Score=44.06  Aligned_cols=45  Identities=20%  Similarity=0.227  Sum_probs=31.6

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhh----cccceEEEEecCCcC
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEK----LFDQVVFSEVSQTPD   90 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~----~~~~~~~~~~~~~~~   90 (183)
                      +..++.|+|++|+|||+++.+++.......    ....+.|+.......
T Consensus        36 ~G~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (258)
T d1v5wa_          36 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFR   84 (258)
T ss_dssp             SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHhhhhcccccceEEEechHHHHH
Confidence            446899999999999999999987653221    223466666655544

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=97.20  E-value=0.00023  Score=54.08  Aligned_cols=26  Identities=23%  Similarity=0.353  Sum_probs=22.7

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +...++++||+|+|||-||+.++...
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~~~   92 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAKHL   92 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCcceeeeCCCCccHHHHHHHHHhhc
Confidence            55679999999999999999998764

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.15  E-value=0.00014  Score=50.00  Aligned_cols=22  Identities=32%  Similarity=0.439  Sum_probs=18.9

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHH
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFA   68 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~   68 (183)
                      +=+|+|+|.+|+||||+|+.+.
T Consensus         3 p~IIgitG~~gSGKstva~~l~   24 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLR   24 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            3478899999999999998764

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.12  E-value=0.00015  Score=47.79  Aligned_cols=22  Identities=23%  Similarity=0.385  Sum_probs=19.1

Q ss_pred             EEEEeCCCCcHHHHHHHHHhHH
Q 035585           50 VGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      |+|+|++|+|||||+..+...-
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~~   24 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLGE   24 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            6799999999999999987543

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.11  E-value=9.6e-05  Score=50.91  Aligned_cols=29  Identities=28%  Similarity=0.297  Sum_probs=24.1

Q ss_pred             cCCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           44 DVNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        44 ~~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +.++-+|+|-|..|+||||+++.+.+.+.
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~~l~   34 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEKYKN   34 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            44556899999999999999999887654

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.06  E-value=0.00014  Score=56.76  Aligned_cols=26  Identities=27%  Similarity=0.457  Sum_probs=23.1

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      +..++++||+|+|||.||+.++..+.
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk~l~   74 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAKLAN   74 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             cccEEEECCCCCCHHHHHHHHHHHhC
Confidence            45899999999999999999998664

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.01  E-value=0.00048  Score=47.60  Aligned_cols=26  Identities=27%  Similarity=0.542  Sum_probs=23.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           49 IVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      +|+|-|..|+||||+++.+.+.+..+
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~~~   27 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFRAA   27 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence            47889999999999999999988765

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=96.98  E-value=0.00038  Score=44.61  Aligned_cols=21  Identities=19%  Similarity=-0.122  Sum_probs=16.4

Q ss_pred             ccEEEEEeCCCCcHHHHHHHH
Q 035585           47 VNIVGVYGMGGIGKTTLVKEF   67 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~   67 (183)
                      ...+.|++++|+|||..+...
T Consensus         7 ~~~~il~~~tGsGKT~~~~~~   27 (140)
T d1yksa1           7 GMTTVLDFHPGAGKTRRFLPQ   27 (140)
T ss_dssp             TCEEEECCCTTSSTTTTHHHH
T ss_pred             CCcEEEEcCCCCChhHHHHHH
Confidence            367789999999999666433

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.98  E-value=0.00036  Score=46.95  Aligned_cols=32  Identities=22%  Similarity=0.248  Sum_probs=23.3

Q ss_pred             HHHhc-cCCccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           39 QDALT-DVNVNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        39 ~~~l~-~~~~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      .+++. ..+..-++|+|.+|+|||||+.++...
T Consensus         4 ~~~~~~~~k~~kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_           4 LQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             HHHHTCTTCCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred             HHhccccCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34443 233355889999999999999998654

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.97  E-value=0.00028  Score=48.41  Aligned_cols=25  Identities=12%  Similarity=0.371  Sum_probs=21.7

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFAR   69 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~   69 (183)
                      .+.+.|+|+|.+|+|||||+..+..
T Consensus        21 ~~~~~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          21 GGLPEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHhcC
Confidence            3445799999999999999999985

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.97  E-value=0.00069  Score=45.21  Aligned_cols=30  Identities=27%  Similarity=0.299  Sum_probs=25.4

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      .+.-+|++.|+=|+||||+++.+++.+...
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~   60 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQGIGHQ   60 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhhcccc
Confidence            344589999999999999999999988654

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.97  E-value=0.00045  Score=46.33  Aligned_cols=34  Identities=24%  Similarity=0.366  Sum_probs=25.0

Q ss_pred             HHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           36 KSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        36 ~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      ..+..++.+.. .-|+|+|.+|+|||||+.++...
T Consensus         5 ~~~~~~~~~k~-~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1           5 TRIWRLFNHQE-HKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             HHHHHHHTTSC-EEEEEEESTTSSHHHHHHHHHTT
T ss_pred             HHHHHHhCCCe-EEEEEECCCCCCHHHHHHHHhcC
Confidence            34555554443 45778999999999999988754

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.94  E-value=0.0017  Score=45.35  Aligned_cols=29  Identities=17%  Similarity=0.258  Sum_probs=24.8

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      +...|+|-|+-|+||||+++.+...+..+
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~~   30 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQPN   30 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTTS
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHHhC
Confidence            45689999999999999999998887653

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.94  E-value=0.00026  Score=46.90  Aligned_cols=22  Identities=27%  Similarity=0.510  Sum_probs=19.4

Q ss_pred             EEEEeCCCCcHHHHHHHHHhHH
Q 035585           50 VGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      ++|+|.+|+|||||+..+....
T Consensus         8 I~ivG~~~vGKSSLi~~~~~~~   29 (169)
T d1upta_           8 ILILGLDGAGKTTILYRLQVGE   29 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999987643

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.85  E-value=0.00036  Score=48.19  Aligned_cols=24  Identities=21%  Similarity=0.242  Sum_probs=21.1

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      .+.|+|+|.+|+|||||+..+...
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            368899999999999999998754

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.83  E-value=0.0003  Score=49.71  Aligned_cols=26  Identities=27%  Similarity=0.455  Sum_probs=22.8

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +.++..|+|.-|+|||||++.+....
T Consensus         2 ~iPv~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           2 PIAVTLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             CCCEEEEeeCCCCCHHHHHHHHHhcC
Confidence            56889999999999999999988753

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.00039  Score=49.24  Aligned_cols=29  Identities=24%  Similarity=0.289  Sum_probs=24.9

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      ++..|+|-|.-|+||||+++.+...+...
T Consensus         1 ~pk~IviEG~~GsGKST~~~~L~~~l~~~   29 (241)
T d2ocpa1           1 GPRRLSIEGNIAVGKSTFVKLLTKTYPEW   29 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCTTS
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHhhc
Confidence            35789999999999999999999877543

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.82  E-value=0.0013  Score=46.04  Aligned_cols=38  Identities=24%  Similarity=0.342  Sum_probs=30.3

Q ss_pred             cEEEEE-eCCCCcHHHHHHHHHhHHhhhhcccceEEEEecC
Q 035585           48 NIVGVY-GMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQ   87 (183)
Q Consensus        48 ~~v~i~-G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~   87 (183)
                      ++|+|+ |.+|+||||++..++..+...  ...+.++++..
T Consensus         2 kvIav~s~KGGvGKTtia~nlA~~la~~--g~~VlliD~D~   40 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANLGVALAQL--GHDVTIVDADI   40 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHHHHT--TCCEEEEECCC
T ss_pred             EEEEEECCCCCChHHHHHHHHHHHHHhC--CCCEEEEeCCC
Confidence            566777 899999999999999988865  34577887753

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.80  E-value=0.00039  Score=46.38  Aligned_cols=21  Identities=24%  Similarity=0.684  Sum_probs=18.6

Q ss_pred             EEEEeCCCCcHHHHHHHHHhH
Q 035585           50 VGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      |+++|.+|+|||+|+.++...
T Consensus         5 v~liG~~~vGKSsLi~rl~~~   25 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCKG   25 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999988753

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.80  E-value=0.00044  Score=48.22  Aligned_cols=20  Identities=45%  Similarity=0.619  Sum_probs=17.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHH
Q 035585           49 IVGVYGMGGIGKTTLVKEFA   68 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~   68 (183)
                      +|+|+|..|+||||+++.+.
T Consensus         5 iIgitG~igSGKStv~~~l~   24 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFA   24 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHH
Confidence            78999999999999998653

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.79  E-value=0.00037  Score=48.49  Aligned_cols=20  Identities=50%  Similarity=0.677  Sum_probs=17.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHH
Q 035585           49 IVGVYGMGGIGKTTLVKEFA   68 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~   68 (183)
                      +|+|+|..|+||||+++.+.
T Consensus         4 iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999988663

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.78  E-value=0.00041  Score=45.54  Aligned_cols=22  Identities=27%  Similarity=0.403  Sum_probs=19.2

Q ss_pred             EEEEEeCCCCcHHHHHHHHHhH
Q 035585           49 IVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      -++|+|++|+|||||+..+...
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3689999999999999998764

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.76  E-value=0.00074  Score=47.71  Aligned_cols=33  Identities=21%  Similarity=0.502  Sum_probs=25.8

Q ss_pred             HHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           35 LKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        35 l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      ++.|.+++.   ....++.|.+|+|||||+..+...
T Consensus        86 ~~~L~~~l~---~kt~~~~G~SGVGKSTLiN~L~~~  118 (225)
T d1u0la2          86 IEELKEYLK---GKISTMAGLSGVGKSSLLNAINPG  118 (225)
T ss_dssp             HHHHHHHHS---SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred             HhhHHHHhc---CCeEEEECCCCCCHHHHHHhhcch
Confidence            566666663   257889999999999999988643

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.00044  Score=46.56  Aligned_cols=21  Identities=29%  Similarity=0.540  Sum_probs=18.6

Q ss_pred             EEEEeCCCCcHHHHHHHHHhH
Q 035585           50 VGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      ++|+|.+|+|||+|+.++...
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            678999999999999998754

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.74  E-value=0.00049  Score=47.65  Aligned_cols=23  Identities=26%  Similarity=0.242  Sum_probs=20.2

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      +.|+|+|++|+|||||+.++...
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999998763

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00045  Score=46.12  Aligned_cols=21  Identities=43%  Similarity=0.743  Sum_probs=18.9

Q ss_pred             EEEEeCCCCcHHHHHHHHHhH
Q 035585           50 VGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      |+|+|.+|+|||+|+.++...
T Consensus         6 i~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           6 VVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            788999999999999998764

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.00047  Score=46.05  Aligned_cols=21  Identities=29%  Similarity=0.556  Sum_probs=18.7

Q ss_pred             EEEEeCCCCcHHHHHHHHHhH
Q 035585           50 VGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      ++|+|.+|+|||+|+.++...
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            778899999999999998754

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.72  E-value=0.00046  Score=46.29  Aligned_cols=22  Identities=27%  Similarity=0.507  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHHhH
Q 035585           49 IVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      .|+|+|.+|+|||||+.++...
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~   23 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKK   23 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999998753

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.70  E-value=0.0005  Score=46.06  Aligned_cols=21  Identities=24%  Similarity=0.512  Sum_probs=18.8

Q ss_pred             EEEEeCCCCcHHHHHHHHHhH
Q 035585           50 VGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      ++++|.+|+|||||+..+...
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            789999999999999988754

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.69  E-value=0.00064  Score=50.75  Aligned_cols=106  Identities=22%  Similarity=0.207  Sum_probs=54.1

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcCCe
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGLEFSEEAESRRASRLYERLKKEKM  127 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  127 (183)
                      ..++|+|++|+||||+++.++......   ..++.+.-...-.+.. ...+. .+...    ........+...++ ..+
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i~~~---~rivtiEd~~El~l~~-~~~~~-~~~~~----~~~~~~~ll~~~lR-~~p  236 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTEEIVFKH-HKNYT-QLFFG----GNITSADCLKSCLR-MRP  236 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGSCTT---CCEEEEESSCCCCCSS-CSSEE-EEECB----TTBCHHHHHHHHTT-SCC
T ss_pred             CCEEEEeeccccchHHHHHHhhhcccc---cceeeccchhhhhccc-ccccc-eeccc----cchhHHHHHHHHhc-cCC
Confidence            468999999999999999998766432   1122221111000000 00000 00000    00011123333444 778


Q ss_pred             EEEEEeCCCCcccccccCcCCCCCCCCcEEEEEecChHH
Q 035585          128 ILVILDNIWKYLDLETVGIPFGDDHRGCKLLLTARDCNV  166 (183)
Q Consensus       128 ~llvlD~~~~~~~~~~l~~~~~~~~~~~~iiitsr~~~~  166 (183)
                      -.+++.|+.+.+.+..+ ..+...+.|  ++.|.|-.+.
T Consensus       237 d~iivgEiR~~ea~~~l-~a~~tGh~g--~~tT~Ha~s~  272 (323)
T d1g6oa_         237 DRIILGELRSSEAYDFY-NVLCSGHKG--TLTTLHAGSS  272 (323)
T ss_dssp             SEEEESCCCSTHHHHHH-HHHHTTCSC--EEEEECCSSH
T ss_pred             CcccCCccCchhHHHHH-HHHHhcCCc--EEEEECCCCH
Confidence            88999999877665443 444444455  4666665543

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.00048  Score=46.12  Aligned_cols=21  Identities=48%  Similarity=0.982  Sum_probs=18.5

Q ss_pred             EEEEeCCCCcHHHHHHHHHhH
Q 035585           50 VGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      |+|+|.+|+|||+|+.++...
T Consensus         5 i~viG~~~vGKTsLi~r~~~~   25 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVKG   25 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            678899999999999988753

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.68  E-value=0.00053  Score=48.59  Aligned_cols=24  Identities=17%  Similarity=0.169  Sum_probs=21.2

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      .+|+|+|..|+||||+|+.+.+++
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~   25 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNY   25 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            579999999999999999987653

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.68  E-value=0.00047  Score=45.86  Aligned_cols=21  Identities=33%  Similarity=0.624  Sum_probs=18.6

Q ss_pred             EEEEeCCCCcHHHHHHHHHhH
Q 035585           50 VGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      |+|+|++|+|||||+.++...
T Consensus         5 i~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           5 LLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEECCCCCCHHHHHHHHcCC
Confidence            789999999999999998653

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.67  E-value=0.00054  Score=45.54  Aligned_cols=21  Identities=33%  Similarity=0.458  Sum_probs=19.0

Q ss_pred             EEEEeCCCCcHHHHHHHHHhH
Q 035585           50 VGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      |+|+|.+|+|||+|+.++...
T Consensus         5 v~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998764

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.00057  Score=45.83  Aligned_cols=21  Identities=38%  Similarity=0.729  Sum_probs=18.9

Q ss_pred             EEEEeCCCCcHHHHHHHHHhH
Q 035585           50 VGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      ++|+|.+|+|||+|+..+...
T Consensus         8 i~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998864

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.00057  Score=45.58  Aligned_cols=21  Identities=33%  Similarity=0.665  Sum_probs=18.9

Q ss_pred             EEEEeCCCCcHHHHHHHHHhH
Q 035585           50 VGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      |+|+|.+|+|||+|+.++...
T Consensus         6 i~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            788999999999999998764

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.00057  Score=45.84  Aligned_cols=21  Identities=38%  Similarity=0.692  Sum_probs=18.9

Q ss_pred             EEEEeCCCCcHHHHHHHHHhH
Q 035585           50 VGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      |+|+|.+|+|||+|+.++...
T Consensus         8 i~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           8 LVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            788999999999999998764

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.66  E-value=0.00052  Score=46.15  Aligned_cols=25  Identities=24%  Similarity=0.488  Sum_probs=21.7

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      ....|+|.|.+|+|||||+.++...
T Consensus         4 ~~~~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           4 YCGFIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             cccEEEEECCCCCCHHHHHHHHhCC
Confidence            3467899999999999999999864

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.00056  Score=45.68  Aligned_cols=21  Identities=38%  Similarity=0.642  Sum_probs=18.6

Q ss_pred             EEEEeCCCCcHHHHHHHHHhH
Q 035585           50 VGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      ++|+|.+|+|||+|+.++...
T Consensus         6 ivlvG~~~vGKTsLi~r~~~~   26 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCEN   26 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            688999999999999998753

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.00058  Score=45.95  Aligned_cols=22  Identities=36%  Similarity=0.629  Sum_probs=19.2

Q ss_pred             EEEEEeCCCCcHHHHHHHHHhH
Q 035585           49 IVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      -|+|+|.+|+|||+|+..+...
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999988753

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.65  E-value=0.0016  Score=49.98  Aligned_cols=42  Identities=17%  Similarity=0.154  Sum_probs=32.2

Q ss_pred             hHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           31 RLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        31 R~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      ....++.+..++ ..+..+++|.|+.|+||||.+..+.+.+..
T Consensus       143 ~~~~~~~l~~l~-~~~~GliLvtGpTGSGKSTTl~~~l~~~~~  184 (401)
T d1p9ra_         143 TAHNHDNFRRLI-KRPHGIILVTGPTGSGKSTTLYAGLQELNS  184 (401)
T ss_dssp             CHHHHHHHHHHH-TSSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred             cHHHHHHHHHHH-hhhhceEEEEcCCCCCccHHHHHHhhhhcC
Confidence            345555665554 455689999999999999999999887743

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.00057  Score=45.75  Aligned_cols=22  Identities=32%  Similarity=0.759  Sum_probs=19.3

Q ss_pred             EEEEeCCCCcHHHHHHHHHhHH
Q 035585           50 VGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      ++|+|.+|+|||+|+..+....
T Consensus         5 i~lvG~~~vGKTsli~r~~~~~   26 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTKR   26 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            6789999999999999988643

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.00061  Score=45.26  Aligned_cols=21  Identities=29%  Similarity=0.517  Sum_probs=18.6

Q ss_pred             EEEEeCCCCcHHHHHHHHHhH
Q 035585           50 VGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      |+|+|.+|+|||+|+.++...
T Consensus         3 v~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678899999999999998753

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.00026  Score=50.01  Aligned_cols=27  Identities=19%  Similarity=0.341  Sum_probs=23.7

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      ...|+|-|+.|+||||+++.+...+..
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~~l~~   28 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQLCED   28 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            468999999999999999999887753

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.64  E-value=0.00058  Score=45.87  Aligned_cols=20  Identities=35%  Similarity=0.693  Sum_probs=18.3

Q ss_pred             EEEEeCCCCcHHHHHHHHHh
Q 035585           50 VGVYGMGGIGKTTLVKEFAR   69 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~   69 (183)
                      ++|+|.+|+|||||+.++..
T Consensus         5 i~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            78999999999999999875

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.00063  Score=45.38  Aligned_cols=23  Identities=22%  Similarity=0.533  Sum_probs=19.7

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      .-|+|.|.+|+|||+|+.++...
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            35788999999999999998753

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.63  E-value=0.00051  Score=46.39  Aligned_cols=24  Identities=25%  Similarity=0.459  Sum_probs=21.3

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      ...|+|+|.+|+|||||+..++..
T Consensus         5 ~~~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           5 SGFVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            457999999999999999998864

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.63  E-value=0.0006  Score=45.53  Aligned_cols=21  Identities=29%  Similarity=0.602  Sum_probs=18.7

Q ss_pred             EEEEeCCCCcHHHHHHHHHhH
Q 035585           50 VGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      |+|+|.+|+|||+|+.++...
T Consensus         7 i~lvG~~~vGKTsli~rl~~~   27 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVED   27 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            778899999999999998754

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.00061  Score=45.62  Aligned_cols=21  Identities=29%  Similarity=0.575  Sum_probs=18.8

Q ss_pred             EEEEeCCCCcHHHHHHHHHhH
Q 035585           50 VGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      |+++|.+|+|||+|+.++...
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            688999999999999998854

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.60  E-value=0.0066  Score=41.86  Aligned_cols=42  Identities=19%  Similarity=0.088  Sum_probs=28.2

Q ss_pred             cccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           27 AFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        27 ~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      .+.-|.=+.+.+..++.+   ...+|.++.|+|||.++..++.++
T Consensus        68 ~~~Lr~yQ~eav~~~~~~---~~~ll~~~tG~GKT~~a~~~~~~~  109 (206)
T d2fz4a1          68 EISLRDYQEKALERWLVD---KRGCIVLPTGSGKTHVAMAAINEL  109 (206)
T ss_dssp             CCCCCHHHHHHHHHHTTT---SEEEEEESSSTTHHHHHHHHHHHS
T ss_pred             CCCcCHHHHHHHHHHHhC---CCcEEEeCCCCCceehHHhHHHHh
Confidence            344566666666666533   234577999999999887776554

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.59  E-value=0.0007  Score=45.08  Aligned_cols=21  Identities=29%  Similarity=0.591  Sum_probs=18.7

Q ss_pred             EEEEeCCCCcHHHHHHHHHhH
Q 035585           50 VGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      ++++|.+|+|||+|+.++...
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999998754

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=96.58  E-value=0.00061  Score=45.00  Aligned_cols=22  Identities=27%  Similarity=0.397  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHHhH
Q 035585           49 IVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      -|+|+|.+|+|||||+.++...
T Consensus         3 kI~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3689999999999999998743

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.58  E-value=0.00053  Score=46.30  Aligned_cols=22  Identities=23%  Similarity=0.410  Sum_probs=19.6

Q ss_pred             EEEEEeCCCCcHHHHHHHHHhH
Q 035585           49 IVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      .|+|+|.+|+|||||+..+..+
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999998754

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.00071  Score=45.16  Aligned_cols=22  Identities=36%  Similarity=0.699  Sum_probs=19.2

Q ss_pred             EEEEeCCCCcHHHHHHHHHhHH
Q 035585           50 VGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      |+|+|.+|+|||+|+.++....
T Consensus         6 ivvvG~~~vGKTsli~r~~~~~   27 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQGI   27 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            7889999999999999987643

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.00073  Score=45.54  Aligned_cols=22  Identities=27%  Similarity=0.353  Sum_probs=18.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHHhH
Q 035585           49 IVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      -|+|+|.+|+|||+|+.++...
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3678899999999999988764

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.00058  Score=46.40  Aligned_cols=21  Identities=29%  Similarity=0.544  Sum_probs=18.4

Q ss_pred             EEEEeCCCCcHHHHHHHHHhH
Q 035585           50 VGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      |+|+|.+|+|||||+..+.+.
T Consensus         8 i~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            678999999999999988753

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=96.57  E-value=0.0039  Score=45.24  Aligned_cols=89  Identities=15%  Similarity=0.149  Sum_probs=48.5

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCC-cCHHHHHHHHHHHhC-----------CCchh--HHH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQT-PDIKKIHGEIAEKLG-----------LEFSE--EAE  111 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~l~-----------~~~~~--~~~  111 (183)
                      +.+-++|.|++|+|||+|+..........  ...++|.-+... ....++...+.+.-.           ...+.  ...
T Consensus        66 ~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~--~~v~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~tsd~p~~~r~~a  143 (276)
T d1fx0a3          66 RGQRELIIGDRQTGKTAVATDTILNQQGQ--NVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLA  143 (276)
T ss_dssp             TTCBCBEEESSSSSHHHHHHHHHHTCCTT--TCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHH
T ss_pred             CCceEeeccCCCCChHHHHHHHHhhhccc--CceeeeeeecchhHHHHHHHHhhccCCcceeeeecccccCccHHHHHHH
Confidence            34558889999999999998765443332  234555555443 334444444433210           00111  111


Q ss_pred             HHHHHHHHHHHh-cCCeEEEEEeCCC
Q 035585          112 SRRASRLYERLK-KEKMILVILDNIW  136 (183)
Q Consensus       112 ~~~~~~~~~~~~-~~~~~llvlD~~~  136 (183)
                      ......+-++++ +++.+||++|++.
T Consensus       144 ~~~a~tiAEyfrd~G~~Vlll~Dslt  169 (276)
T d1fx0a3         144 PYTGAALAEYFMYRERHTLIIYDDLS  169 (276)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEEECHH
T ss_pred             HHHHHHHHHHHHHcCCceeEEeeccH
Confidence            122233445554 4689999999875

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.56  E-value=0.00069  Score=45.96  Aligned_cols=21  Identities=33%  Similarity=0.708  Sum_probs=18.7

Q ss_pred             EEEEeCCCCcHHHHHHHHHhH
Q 035585           50 VGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      |+|+|.+|+|||||+..+.+.
T Consensus         5 v~vvG~~~vGKSSLi~~l~~~   25 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVNK   25 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999988753

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.00077  Score=45.24  Aligned_cols=21  Identities=33%  Similarity=0.577  Sum_probs=18.7

Q ss_pred             EEEEeCCCCcHHHHHHHHHhH
Q 035585           50 VGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      |+|+|.+|+|||+|+.++...
T Consensus         8 I~lvG~~~vGKTsll~~~~~~   28 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIEK   28 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998753

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=96.54  E-value=0.0015  Score=45.21  Aligned_cols=40  Identities=18%  Similarity=0.194  Sum_probs=31.4

Q ss_pred             HHHHHHHHHhc-cCCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           33 STLKSIQDALT-DVNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        33 ~~l~~l~~~l~-~~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ..+..+..++. ..+...++++||+++|||+++..+...+.
T Consensus        38 ~Fl~~l~~~l~~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~   78 (205)
T d1tuea_          38 TFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ   78 (205)
T ss_dssp             HHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCCCceEEEEECCCCccHHHHHHHHHHHhC
Confidence            45556666665 45567899999999999999999888764

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.54  E-value=0.00073  Score=45.49  Aligned_cols=21  Identities=38%  Similarity=0.730  Sum_probs=18.7

Q ss_pred             EEEEeCCCCcHHHHHHHHHhH
Q 035585           50 VGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      ++|+|.+|+|||||+.++...
T Consensus         7 i~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988653

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.00076  Score=45.11  Aligned_cols=22  Identities=32%  Similarity=0.543  Sum_probs=18.6

Q ss_pred             EEEEeCCCCcHHHHHHHHHhHH
Q 035585           50 VGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      ++|+|.+|+|||+|+..+....
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~~   25 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGVE   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC-
T ss_pred             EEEECCCCcCHHHHHHHHhCCc
Confidence            6789999999999999987543

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=96.50  E-value=0.0022  Score=47.09  Aligned_cols=38  Identities=16%  Similarity=0.158  Sum_probs=22.1

Q ss_pred             EEEEEeCCCCcHHHHHHH-HHhHHhhhhc-ccceEEEEec
Q 035585           49 IVGVYGMGGIGKTTLVKE-FARQASEEKL-FDQVVFSEVS   86 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~-~~~~~~~~~~-~~~~~~~~~~   86 (183)
                      .+.|.|++|+||||.+.. +++.+..... ...++++..+
T Consensus        26 ~~lV~g~aGSGKTt~l~~ri~~ll~~~~~~p~~il~lt~t   65 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFT   65 (318)
T ss_dssp             CEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESS
T ss_pred             CEEEEecCCccHHHHHHHHHHHHHHcCCCCHHHeEeEecc
Confidence            477889999999966544 4444433211 1235555443

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=96.50  E-value=0.002  Score=46.85  Aligned_cols=39  Identities=15%  Similarity=0.127  Sum_probs=22.4

Q ss_pred             cEEEEEeCCCCcHHHHH-HHHHhHHhhhhc-ccceEEEEec
Q 035585           48 NIVGVYGMGGIGKTTLV-KEFARQASEEKL-FDQVVFSEVS   86 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~-~~~~~~~~~~~~-~~~~~~~~~~   86 (183)
                      ..++|.|++|+||||.+ ..+.+.+..... ...+.++..+
T Consensus        15 ~~~lI~g~aGTGKTt~l~~rv~~ll~~~~~~~~~ILvlt~t   55 (306)
T d1uaaa1          15 GPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFT   55 (306)
T ss_dssp             SEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESS
T ss_pred             CCEEEEeeCCccHHHHHHHHHHHHHHhcCCChhHEEEEeCc
Confidence            34778899999999654 444444433211 1235554443

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.49  E-value=0.00084  Score=44.88  Aligned_cols=21  Identities=24%  Similarity=0.539  Sum_probs=18.6

Q ss_pred             EEEEeCCCCcHHHHHHHHHhH
Q 035585           50 VGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      ++|+|.+|+|||+|+.++...
T Consensus         6 i~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999998754

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.00083  Score=45.54  Aligned_cols=22  Identities=32%  Similarity=0.495  Sum_probs=19.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHHhH
Q 035585           49 IVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      -++|+|.+|+|||+|+.++...
T Consensus         7 KivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999998764

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.48  E-value=0.0028  Score=44.26  Aligned_cols=37  Identities=24%  Similarity=0.413  Sum_probs=30.3

Q ss_pred             cEEEEE-eCCCCcHHHHHHHHHhHHhhhhcccceEEEEec
Q 035585           48 NIVGVY-GMGGIGKTTLVKEFARQASEEKLFDQVVFSEVS   86 (183)
Q Consensus        48 ~~v~i~-G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~   86 (183)
                      ++|+|+ +.+|+||||++..++..+...  ...+..+++.
T Consensus         3 ~vIav~~~kGGvGKTtia~nLA~~la~~--g~~VlliD~D   40 (237)
T d1g3qa_           3 RIISIVSGKGGTGKTTVTANLSVALGDR--GRKVLAVDGD   40 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHHHhC--CCCEEEEeCC
Confidence            578888 689999999999999988865  3458888775

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.48  E-value=0.00079  Score=45.15  Aligned_cols=21  Identities=38%  Similarity=0.586  Sum_probs=18.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHHh
Q 035585           49 IVGVYGMGGIGKTTLVKEFAR   69 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~   69 (183)
                      -++++|.+|+|||||+.++..
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            488999999999999988855

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.46  E-value=0.00091  Score=45.84  Aligned_cols=22  Identities=27%  Similarity=0.564  Sum_probs=19.2

Q ss_pred             EEEEeCCCCcHHHHHHHHHhHH
Q 035585           50 VGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      ++|+|.+|+|||||+.++....
T Consensus         9 ivvvG~~~vGKTsli~~l~~~~   30 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSDDT   30 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEECCCCcCHHHHHHHHhhCC
Confidence            7889999999999999987543

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.45  E-value=0.0019  Score=46.42  Aligned_cols=25  Identities=32%  Similarity=0.526  Sum_probs=21.4

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      ..-.|+|+|.+|+|||||+..++.+
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCC
Confidence            4456889999999999999999864

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.45  E-value=0.00093  Score=44.41  Aligned_cols=21  Identities=33%  Similarity=0.403  Sum_probs=18.2

Q ss_pred             EEEEeCCCCcHHHHHHHHHhH
Q 035585           50 VGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      +++.|++|+|||+|+.++...
T Consensus         5 i~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            678899999999999988654

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.00092  Score=44.69  Aligned_cols=21  Identities=38%  Similarity=0.570  Sum_probs=18.7

Q ss_pred             EEEEeCCCCcHHHHHHHHHhH
Q 035585           50 VGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      ++|+|.+|+|||+|+.++...
T Consensus         9 i~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988653

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.00092  Score=44.88  Aligned_cols=21  Identities=33%  Similarity=0.729  Sum_probs=18.8

Q ss_pred             EEEEeCCCCcHHHHHHHHHhH
Q 035585           50 VGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      |+|+|.+|+|||+|+.++...
T Consensus         9 I~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999888753

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=96.41  E-value=0.001  Score=44.53  Aligned_cols=23  Identities=35%  Similarity=0.593  Sum_probs=19.6

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      .-++|+|.+|+|||+|+.++...
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~~   27 (168)
T d1u8za_           5 HKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            34789999999999999998753

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.40  E-value=0.0011  Score=44.95  Aligned_cols=21  Identities=38%  Similarity=0.547  Sum_probs=18.8

Q ss_pred             EEEEeCCCCcHHHHHHHHHhH
Q 035585           50 VGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      ++++|.+|+|||+|+..+.+.
T Consensus         5 ivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999988764

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.0011  Score=45.08  Aligned_cols=21  Identities=38%  Similarity=0.602  Sum_probs=18.8

Q ss_pred             EEEEeCCCCcHHHHHHHHHhH
Q 035585           50 VGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      ++|+|.+|+|||+|+.++...
T Consensus        12 i~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhhC
Confidence            789999999999999998754

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.36  E-value=0.00069  Score=45.92  Aligned_cols=21  Identities=33%  Similarity=0.569  Sum_probs=18.6

Q ss_pred             EEEEEeCCCCcHHHHHHHHHh
Q 035585           49 IVGVYGMGGIGKTTLVKEFAR   69 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~   69 (183)
                      -|+|+|.+++|||||+..+..
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEE
T ss_pred             eEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999988754

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.0012  Score=45.11  Aligned_cols=22  Identities=32%  Similarity=0.520  Sum_probs=18.9

Q ss_pred             EEEEeCCCCcHHHHHHHHHhHH
Q 035585           50 VGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      |+|+|.+|+|||+|+.++...-
T Consensus         6 vvllG~~~vGKTSli~r~~~~~   27 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTTNK   27 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            7789999999999999887543

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.0011  Score=44.54  Aligned_cols=21  Identities=43%  Similarity=0.594  Sum_probs=18.6

Q ss_pred             EEEEeCCCCcHHHHHHHHHhH
Q 035585           50 VGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      |+++|.+|+|||+|+..+...
T Consensus         6 v~lvG~~~vGKTsLi~~~~~~   26 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAGV   26 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999988753

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.34  E-value=0.0011  Score=44.93  Aligned_cols=24  Identities=25%  Similarity=0.275  Sum_probs=20.7

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      ..-+++.|++|+||||+|..+..+
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc
Confidence            356899999999999999887764

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=96.34  E-value=0.019  Score=40.45  Aligned_cols=44  Identities=18%  Similarity=0.134  Sum_probs=34.9

Q ss_pred             chHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           30 SRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        30 gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      .....++.+.+.+....+-..+|+|..|+|||-++.......-.
T Consensus        59 ~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~  102 (233)
T d2eyqa3          59 DQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD  102 (233)
T ss_dssp             HHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHHHHH
Confidence            46666777777777777788999999999999998887765543

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.33  E-value=0.0012  Score=44.49  Aligned_cols=21  Identities=29%  Similarity=0.650  Sum_probs=18.8

Q ss_pred             EEEEeCCCCcHHHHHHHHHhH
Q 035585           50 VGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      ++|+|.+|+|||+|+..+...
T Consensus        10 i~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988753

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=96.33  E-value=0.0015  Score=46.93  Aligned_cols=42  Identities=19%  Similarity=0.252  Sum_probs=29.9

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHhhhhc--------ccceEEEEecCC
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQASEEKL--------FDQVVFSEVSQT   88 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~--------~~~~~~~~~~~~   88 (183)
                      ..+..|+|++|+|||+|+.+++..+.....        -..++|+.....
T Consensus        29 g~~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~~E~~   78 (274)
T d1nlfa_          29 GTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP   78 (274)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHcCCCcccccccCCCceEEEeccch
Confidence            368889999999999999999877653211        124677666543

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.32  E-value=0.0085  Score=43.61  Aligned_cols=91  Identities=11%  Similarity=0.097  Sum_probs=50.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhHHhhhhcc------cceEEEEecCC-cCHHHHHHHHHHHhCC-----------Cch
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQASEEKLF------DQVVFSEVSQT-PDIKKIHGEIAEKLGL-----------EFS  107 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~------~~~~~~~~~~~-~~~~~~~~~i~~~l~~-----------~~~  107 (183)
                      +.+-++|.|++|+|||+|+..+..........      ..+++.-+... ....++...+...-..           ..+
T Consensus        67 ~GQr~~If~~~g~GKt~ll~~~~~~~~~~~~~~~~~~~~~~v~~~IGer~~E~~e~~~~~~~~~~~~~tvvv~~ts~~~~  146 (285)
T d2jdia3          67 RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAA  146 (285)
T ss_dssp             TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSSCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCH
T ss_pred             CCCEEEeecCCCCChHHHHHHHHHhHHhhccccccccceEEEEeeeCccHHHHHHHHHHhcccccccceEEEEECCCCCH
Confidence            44667889999999999998887665432111      12444444433 4455555555443211           111


Q ss_pred             hHHHH--HHHHHHHHHHh-cCCeEEEEEeCCC
Q 035585          108 EEAES--RRASRLYERLK-KEKMILVILDNIW  136 (183)
Q Consensus       108 ~~~~~--~~~~~~~~~~~-~~~~~llvlD~~~  136 (183)
                      .....  .....+-++++ +++.+||++|++.
T Consensus       147 ~~r~~~~~~a~tiAEyfrd~G~~VLll~Dslt  178 (285)
T d2jdia3         147 PLQYLAPYSGCSMGEYFRDNGKHALIIYDDLS  178 (285)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEEEEETHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCcEEEEEcChH
Confidence            11111  11123334443 4789999999875

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.31  E-value=0.0011  Score=44.93  Aligned_cols=24  Identities=25%  Similarity=0.254  Sum_probs=20.7

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      ..-+++.|++|+||||+|..+..+
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHTT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc
Confidence            356899999999999999888764

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.31  E-value=0.0012  Score=44.10  Aligned_cols=21  Identities=38%  Similarity=0.697  Sum_probs=18.6

Q ss_pred             EEEEeCCCCcHHHHHHHHHhH
Q 035585           50 VGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      ++++|.+|+|||+|+..+...
T Consensus         7 i~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678899999999999998764

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.28  E-value=0.0011  Score=45.16  Aligned_cols=18  Identities=33%  Similarity=0.639  Sum_probs=17.0

Q ss_pred             EEEEeCCCCcHHHHHHHH
Q 035585           50 VGVYGMGGIGKTTLVKEF   67 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~   67 (183)
                      ++|.|.+|+|||+|+.++
T Consensus         5 ivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            689999999999999998

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=96.27  E-value=0.00082  Score=45.18  Aligned_cols=25  Identities=16%  Similarity=0.169  Sum_probs=21.2

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFAR   69 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~   69 (183)
                      ++..-|+|+|.+++|||||+.++..
T Consensus        14 ~~~~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          14 DTGIEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhC
Confidence            4456799999999999999988754

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.22  E-value=0.0014  Score=44.35  Aligned_cols=22  Identities=27%  Similarity=0.469  Sum_probs=19.3

Q ss_pred             EEEEEeCCCCcHHHHHHHHHhH
Q 035585           49 IVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      -|+|+|.+|+|||||+.++...
T Consensus        10 kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            4789999999999999998753

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.22  E-value=0.00088  Score=45.19  Aligned_cols=21  Identities=33%  Similarity=0.578  Sum_probs=18.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHHh
Q 035585           49 IVGVYGMGGIGKTTLVKEFAR   69 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~   69 (183)
                      .|+|+|.+|+|||||+..+..
T Consensus         3 ~VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            389999999999999999864

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=96.22  E-value=0.0015  Score=43.97  Aligned_cols=24  Identities=29%  Similarity=0.303  Sum_probs=20.7

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      ..-+++.|++|+||||++..+..+
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc
Confidence            357899999999999999887765

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.20  E-value=0.00067  Score=45.51  Aligned_cols=21  Identities=43%  Similarity=0.583  Sum_probs=17.2

Q ss_pred             EEEEeCCCCcHHHHHHHHHhH
Q 035585           50 VGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      ++|+|.+|+|||+|+.++...
T Consensus         6 i~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC--
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678899999999999887654

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=96.19  E-value=0.00099  Score=45.03  Aligned_cols=26  Identities=23%  Similarity=0.335  Sum_probs=20.4

Q ss_pred             cCCccEEEEEeCCCCcHHHHHHHHHh
Q 035585           44 DVNVNIVGVYGMGGIGKTTLVKEFAR   69 (183)
Q Consensus        44 ~~~~~~v~i~G~~G~GKTtL~~~~~~   69 (183)
                      +.+.--++++|.+|+|||||+.++..
T Consensus        14 ~~k~~KI~lvG~~~vGKTsLi~~l~~   39 (182)
T d1moza_          14 SNKELRILILGLDGAGKTTILYRLQI   39 (182)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhc
Confidence            33334588999999999999998754

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.18  E-value=0.0016  Score=43.98  Aligned_cols=21  Identities=33%  Similarity=0.491  Sum_probs=18.2

Q ss_pred             EEEEeCCCCcHHHHHHHHHhH
Q 035585           50 VGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      +++.|.+|+|||+|+.++...
T Consensus         5 ivllG~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQMKII   25 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhhC
Confidence            688999999999999987643

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=96.17  E-value=0.0027  Score=46.11  Aligned_cols=50  Identities=18%  Similarity=0.191  Sum_probs=28.9

Q ss_pred             CccEEEEEeCCCCcHHH-HHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHh
Q 035585           46 NVNIVGVYGMGGIGKTT-LVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKL  102 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTt-L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l  102 (183)
                      +.+.++|.+++|+|||+ .+..+.......  -..++++ .+    ..++..++.+.+
T Consensus         8 ~~~~~lv~~~TGsGKT~~~l~~~~~~~~~~--~~~~lvi-~P----tr~La~q~~~~l   58 (305)
T d2bmfa2           8 KKRLTIMDLHPGAGKTKRYLPAIVREAIKR--GLRTLIL-AP----TRVVAAEMEEAL   58 (305)
T ss_dssp             TTCEEEECCCTTSSTTTTHHHHHHHHHHHH--TCCEEEE-ES----SHHHHHHHHHHT
T ss_pred             cCCcEEEEECCCCCHHHHHHHHHHHHHHhc--CCEEEEE-cc----HHHHHHHHHHHH
Confidence            34678999999999995 333444333222  1224443 22    445666676666

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.15  E-value=0.0016  Score=43.90  Aligned_cols=23  Identities=30%  Similarity=0.541  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHHhHH
Q 035585           49 IVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      -+++.|.+|+|||+|+.++....
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~~   29 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTGS   29 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            47899999999999999887643

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=96.12  E-value=0.0022  Score=42.86  Aligned_cols=23  Identities=22%  Similarity=0.346  Sum_probs=19.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHHhHH
Q 035585           49 IVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      -|+++|.+|+|||||+.++....
T Consensus        14 kIvlvG~~~vGKTSli~rl~~~~   36 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKLKLGQ   36 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHTTCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47789999999999999986543

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.05  E-value=0.0022  Score=43.52  Aligned_cols=22  Identities=27%  Similarity=0.439  Sum_probs=18.9

Q ss_pred             EEEEeCCCCcHHHHHHHHHhHH
Q 035585           50 VGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      ++|.|.+|+|||+|+.++....
T Consensus         5 iv~lG~~~vGKTsll~r~~~~~   26 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMRIIH   26 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6889999999999999986543

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.96  E-value=0.0011  Score=44.47  Aligned_cols=20  Identities=30%  Similarity=0.554  Sum_probs=8.2

Q ss_pred             EEEEeCCCCcHHHHHHHHHh
Q 035585           50 VGVYGMGGIGKTTLVKEFAR   69 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~   69 (183)
                      |+|+|.+|+|||||+..+..
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67889999999999988775

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.94  E-value=0.00054  Score=46.58  Aligned_cols=25  Identities=24%  Similarity=0.343  Sum_probs=20.9

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ++.+|+|++|+||||++.++..-+.
T Consensus        25 ~~tvi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          25 LVTTLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhc
Confidence            4567889999999999999986553

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.92  E-value=0.0017  Score=47.43  Aligned_cols=47  Identities=13%  Similarity=0.179  Sum_probs=31.0

Q ss_pred             CCeEEEEEeCCCCccc---ccccCcCCCCCCCCcEEEEEecChHHHhhcC
Q 035585          125 EKMILVILDNIWKYLD---LETVGIPFGDDHRGCKLLLTARDCNVLLNMS  171 (183)
Q Consensus       125 ~~~~llvlD~~~~~~~---~~~l~~~~~~~~~~~~iiitsr~~~~~~~~~  171 (183)
                      ....++++||++...+   ...+...+....+...+|+|||+..+++...
T Consensus       240 ~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d  289 (308)
T d1e69a_         240 KPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAAD  289 (308)
T ss_dssp             SCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCS
T ss_pred             ccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhcc
Confidence            4556889999986543   1222222222345679999999999988664

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.91  E-value=0.0023  Score=44.79  Aligned_cols=22  Identities=32%  Similarity=0.477  Sum_probs=18.8

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHh
Q 035585           48 NIVGVYGMGGIGKTTLVKEFAR   69 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~   69 (183)
                      .-|+|.|.+|+|||+|+.++..
T Consensus         7 ~KilllG~~~vGKTsll~~~~~   28 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRI   28 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            3578999999999999998753

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.81  E-value=0.00072  Score=44.58  Aligned_cols=22  Identities=23%  Similarity=0.466  Sum_probs=19.5

Q ss_pred             EEEEeCCCCcHHHHHHHHHhHH
Q 035585           50 VGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      |+|.|.+|+|||||+..+...-
T Consensus         3 I~liG~~n~GKSSLin~l~g~~   24 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNED   24 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999987653

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.73  E-value=0.0032  Score=47.71  Aligned_cols=46  Identities=9%  Similarity=0.155  Sum_probs=28.7

Q ss_pred             EEEEEeCCCCccc---ccccCcCCCC-CCCCcEEEEEecChHHHhhcCCC
Q 035585          128 ILVILDNIWKYLD---LETVGIPFGD-DHRGCKLLLTARDCNVLLNMSLC  173 (183)
Q Consensus       128 ~llvlD~~~~~~~---~~~l~~~~~~-~~~~~~iiitsr~~~~~~~~~~~  173 (183)
                      -+++|||++...+   ...+...+.. ...++.+|+|||++.++.....+
T Consensus       356 pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~  405 (427)
T d1w1wa_         356 PFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDAL  405 (427)
T ss_dssp             SEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEE
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHhcccE
Confidence            3788899986543   1122111211 23467899999999998876554

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=95.67  E-value=0.0056  Score=42.03  Aligned_cols=35  Identities=17%  Similarity=0.083  Sum_probs=27.4

Q ss_pred             cEEEEEeCC-CCcHHHHHHHHHhHHhhhhcccceEEEE
Q 035585           48 NIVGVYGMG-GIGKTTLVKEFARQASEEKLFDQVVFSE   84 (183)
Q Consensus        48 ~~v~i~G~~-G~GKTtL~~~~~~~~~~~~~~~~~~~~~   84 (183)
                      ..+.|+|-+ |+||||++..++..+..+.+  .+.++.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~--rVl~id   37 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGY--RTAGYK   37 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTC--CEEEEC
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCC--eEEEEC
Confidence            357899986 99999999999999988733  355543

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=95.65  E-value=0.01  Score=42.82  Aligned_cols=38  Identities=18%  Similarity=0.177  Sum_probs=28.8

Q ss_pred             HHHHHHHHhc--cCCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           34 TLKSIQDALT--DVNVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        34 ~l~~l~~~l~--~~~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      .+..+..+|.  ......+.++|++++|||+++..+...+
T Consensus        89 f~~~l~~~L~~~~~k~n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_          89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             HHHHHHHHHcCCCCccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            3344555563  3556789999999999999999988865

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.56  E-value=0.0063  Score=46.51  Aligned_cols=23  Identities=30%  Similarity=0.440  Sum_probs=20.3

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFAR   69 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~   69 (183)
                      +-.|+|+|.+|+|||||+..+..
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            45699999999999999999874

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.55  E-value=0.0042  Score=45.08  Aligned_cols=25  Identities=20%  Similarity=0.210  Sum_probs=22.1

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      +.|.|+|+|..|+|||||+.++...
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll~~   29 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERILYY   29 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             hceEEEEEeCCCCCHHHHHHHHHHh
Confidence            4578999999999999999999753

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.52  E-value=0.035  Score=37.44  Aligned_cols=22  Identities=23%  Similarity=0.170  Sum_probs=16.8

Q ss_pred             EEEEeCCCCcHHHHHHHHHhHH
Q 035585           50 VGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +.|++|.|+|||.++..+....
T Consensus        26 ~lv~~pTGsGKT~i~~~~~~~~   47 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMIAEYR   47 (200)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             eEEEeCCCCcHHHHHHHHHHHH
Confidence            5688999999998766655443

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.41  E-value=0.0062  Score=42.67  Aligned_cols=25  Identities=36%  Similarity=0.409  Sum_probs=21.3

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      +.++|+|.|.+++|||||+..+...
T Consensus         4 r~p~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           4 RSPIVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCccHHHHHHHHHhh
Confidence            3467999999999999999988654

>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: ATP:corrinoid adenosyltransferase CobA
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.37  E-value=0.047  Score=35.90  Aligned_cols=121  Identities=21%  Similarity=0.177  Sum_probs=66.4

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHhCC-----------Cchh-HHHHHHH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKLGL-----------EFSE-EAESRRA  115 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~-----------~~~~-~~~~~~~  115 (183)
                      ..+-|+=.+|=||||-|.-.+-+....  -..+.++++-........ ..++.....           .... .......
T Consensus         3 G~i~vytG~GKGKTTAAlG~alRA~G~--G~rV~ivQFlKg~~~~ge-~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a   79 (157)
T d1g5ta_           3 GIIIVFTGNGKGKTTAAFGTAARAVGH--GKNVGVVQFIKGTWPNGE-RNLLEPHGVEFQVMATGFTWETQNREADTAAC   79 (157)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHHHHHHT--TCCEEEEESSCCSSCCHH-HHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHhcC--CCEEEEEEEecCCcccch-hhhhcccCcEEEEecCCCcccCCChHHHHHHH
Confidence            356677778999999988876665543  335777777654321111 122222211           0111 1111122


Q ss_pred             HHH----HHHHhcCCeEEEEEeCCCCc-----ccccccCcCCCCCCCCcEEEEEecC--hHHHhhcC
Q 035585          116 SRL----YERLKKEKMILVILDNIWKY-----LDLETVGIPFGDDHRGCKLLLTARD--CNVLLNMS  171 (183)
Q Consensus       116 ~~~----~~~~~~~~~~llvlD~~~~~-----~~~~~l~~~~~~~~~~~~iiitsr~--~~~~~~~~  171 (183)
                      +..    ...+..+.--+|||||+-..     .+.+.+...+...+.+..+|+|-|+  .++++...
T Consensus        80 ~~~~~~a~~~~~~~~~dllILDEi~~Ai~~gli~~~~v~~ll~~rp~~~evVlTGr~~p~~L~e~AD  146 (157)
T d1g5ta_          80 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLAD  146 (157)
T ss_dssp             HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCS
T ss_pred             HHHHHHHHHHhhcCccCEEeHHHHHHHHHcCCCCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhcc
Confidence            222    23334466779999998533     3344444555566778899999995  44555443

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=95.31  E-value=0.0065  Score=43.87  Aligned_cols=22  Identities=36%  Similarity=0.514  Sum_probs=20.2

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHh
Q 035585           48 NIVGVYGMGGIGKTTLVKEFAR   69 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~   69 (183)
                      |.|+|.|..|.|||||+.++..
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~   24 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLY   24 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Confidence            6899999999999999999864

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=95.29  E-value=0.0062  Score=40.92  Aligned_cols=21  Identities=38%  Similarity=0.550  Sum_probs=19.3

Q ss_pred             EEEEEeCCCCcHHHHHHHHHh
Q 035585           49 IVGVYGMGGIGKTTLVKEFAR   69 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~   69 (183)
                      .|+|+|.+++|||||+.++..
T Consensus         7 nIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            589999999999999999874

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.28  E-value=0.059  Score=38.55  Aligned_cols=43  Identities=16%  Similarity=0.084  Sum_probs=31.4

Q ss_pred             hHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           31 RLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        31 R~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      .++.++.+.+.+.++.+-..+|+|..|+|||-++.......-.
T Consensus        88 Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~  130 (264)
T d1gm5a3          88 QKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYE  130 (264)
T ss_dssp             HHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHHHHHh
Confidence            4445566666666666667899999999999988877655443

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=95.26  E-value=0.0025  Score=45.07  Aligned_cols=24  Identities=21%  Similarity=0.440  Sum_probs=19.3

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      ...++.|.+|+|||||+..+....
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC--
T ss_pred             ceEEEECCCCccHHHHHHhhccHh
Confidence            566788999999999999987543

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=95.23  E-value=0.013  Score=44.57  Aligned_cols=26  Identities=31%  Similarity=0.397  Sum_probs=21.1

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .+.++|+|.+|+|||++++.+..+..
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li~~~~   75 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELAYTGL   75 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             cceEEEEeCCCCcHHHHHHHHHHHHH
Confidence            35689999999999999887765543

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=94.50  E-value=0.011  Score=43.92  Aligned_cols=26  Identities=35%  Similarity=0.349  Sum_probs=22.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           49 IVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      .|.|=|+-|+||||+++.+.+.+...
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l~~~   33 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAASGG   33 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGGGCS
T ss_pred             EEEEECCccCCHHHHHHHHHHHhccC
Confidence            46677999999999999999987653

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=94.48  E-value=0.012  Score=43.68  Aligned_cols=25  Identities=36%  Similarity=0.437  Sum_probs=21.6

Q ss_pred             EEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           50 VGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      |.|=|.-|+||||+++.+.+.+...
T Consensus         8 I~IEG~iGsGKSTl~~~L~~~l~~~   32 (331)
T d1osna_           8 IYLDGAYGIGKTTAAEEFLHHFAIT   32 (331)
T ss_dssp             EEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhhc
Confidence            6677999999999999999887653

>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative DEAD box RNA helicase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.00  E-value=0.1  Score=35.54  Aligned_cols=23  Identities=17%  Similarity=-0.018  Sum_probs=17.2

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      ..+.+..++|+|||..+......
T Consensus        43 ~d~iv~a~TGsGKT~~~~l~~~~   65 (208)
T d1hv8a1          43 YNIVAQARTGSGKTASFAIPLIE   65 (208)
T ss_dssp             SEEEEECCSSSSHHHHHHHHHHH
T ss_pred             CCeeeechhcccccceeeccccc
Confidence            36788999999999866554433

>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable ATP-dependent RNA helicase DDX48
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.75  E-value=0.24  Score=34.13  Aligned_cols=25  Identities=20%  Similarity=0.121  Sum_probs=17.4

Q ss_pred             cEEEEEeCCCCcHHH-HHHHHHhHHh
Q 035585           48 NIVGVYGMGGIGKTT-LVKEFARQAS   72 (183)
Q Consensus        48 ~~v~i~G~~G~GKTt-L~~~~~~~~~   72 (183)
                      +.+.+..++|+|||. .+--+.+.+.
T Consensus        55 ~dvi~~a~TGSGKTlayllPil~~l~   80 (222)
T d2j0sa1          55 RDVIAQSQSGTGKTATFSISVLQCLD   80 (222)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTCC
T ss_pred             CCeEEEcCcchhhhhhhccccccccc
Confidence            568899999999994 3333444443

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.67  E-value=0.026  Score=42.04  Aligned_cols=25  Identities=28%  Similarity=0.339  Sum_probs=22.1

Q ss_pred             CCccEEEEEeCCCCcHHHHHHHHHh
Q 035585           45 VNVNIVGVYGMGGIGKTTLVKEFAR   69 (183)
Q Consensus        45 ~~~~~v~i~G~~G~GKTtL~~~~~~   69 (183)
                      ...|.|+|.|..|.|||||+..+..
T Consensus        15 ~~IRNI~iiGhvd~GKTTL~d~Ll~   39 (341)
T d1n0ua2          15 TNVRNMSVIAHVDHGKSTLTDSLVQ   39 (341)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHH
T ss_pred             ccCcEEEEEeCCCCcHHHHHHHHHH
Confidence            4568899999999999999999864

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.60  E-value=0.031  Score=38.35  Aligned_cols=22  Identities=36%  Similarity=0.366  Sum_probs=19.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHHhH
Q 035585           49 IVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      .|+|.|-.+.|||||+.++...
T Consensus         5 ni~iiGhvd~GKSTL~~~Ll~~   26 (204)
T d2c78a3           5 NVGTIGHVDHGKTTLTAALTYV   26 (204)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHHH
Confidence            5899999999999999998643

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=93.60  E-value=0.022  Score=40.98  Aligned_cols=21  Identities=29%  Similarity=0.664  Sum_probs=18.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHHh
Q 035585           49 IVGVYGMGGIGKTTLVKEFAR   69 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~   69 (183)
                      -++|+|.|.+|||||...+..
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~   24 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTK   24 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHC
Confidence            479999999999999998874

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=93.58  E-value=0.023  Score=41.36  Aligned_cols=22  Identities=27%  Similarity=0.643  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHHhH
Q 035585           49 IVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      -++|+|.|.+|||||..++...
T Consensus        12 kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1          12 KTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            3899999999999999999854

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=93.41  E-value=0.013  Score=43.41  Aligned_cols=25  Identities=32%  Similarity=0.327  Sum_probs=18.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           49 IVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      .|.|=|+-|+||||+++.+.+.+..
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l~~   30 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALGSR   30 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC----
T ss_pred             EEEEECCcCCCHHHHHHHHHHHhCC
Confidence            3677799999999999998876543

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=93.38  E-value=0.042  Score=44.69  Aligned_cols=29  Identities=24%  Similarity=0.239  Sum_probs=24.0

Q ss_pred             ccCCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           43 TDVNVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        43 ~~~~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      ...+.+.|.|.|++|+|||.-++.+.+.+
T Consensus        82 ~~~~~QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          82 QSQENQCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             HHCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HcCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            34556889999999999999999887654

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.34  E-value=0.036  Score=40.00  Aligned_cols=28  Identities=21%  Similarity=0.374  Sum_probs=23.6

Q ss_pred             cCCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           44 DVNVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        44 ~~~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +.+..+|+|+|+.++|||+|+..++...
T Consensus        29 ~~~v~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          29 TQPMVVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHcCCC
Confidence            4456789999999999999999987644

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.14  E-value=0.085  Score=36.62  Aligned_cols=24  Identities=17%  Similarity=0.165  Sum_probs=17.8

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      +.+.|++|+|+|||+.+.......
T Consensus        59 ~~~~i~apTGsGKT~~~~~~~~~~   82 (237)
T d1gkub1          59 ESFAATAPTGVGKTSFGLAMSLFL   82 (237)
T ss_dssp             CCEECCCCBTSCSHHHHHHHHHHH
T ss_pred             CCEEEEecCCChHHHHHHHHHHHH
Confidence            467888999999997765544433

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.10  E-value=0.027  Score=41.23  Aligned_cols=20  Identities=30%  Similarity=0.521  Sum_probs=18.3

Q ss_pred             EEEEeCCCCcHHHHHHHHHh
Q 035585           50 VGVYGMGGIGKTTLVKEFAR   69 (183)
Q Consensus        50 v~i~G~~G~GKTtL~~~~~~   69 (183)
                      |+|+|.|.+|||||...+..
T Consensus         3 v~lvG~pn~GKStlfn~lt~   22 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATL   22 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC
T ss_pred             EeEECCCCCCHHHHHHHHHC
Confidence            78999999999999999854

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=92.98  E-value=0.053  Score=44.29  Aligned_cols=28  Identities=25%  Similarity=0.252  Sum_probs=24.0

Q ss_pred             cCCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           44 DVNVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        44 ~~~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      ..+.+.|.|.|++|+|||.-++.+.+.+
T Consensus       122 ~~~nQsIiisGeSGaGKTe~~k~il~yL  149 (712)
T d1d0xa2         122 DRQNQSLLITGESGAGKTENTKKVIQYL  149 (712)
T ss_dssp             HTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             hCCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence            4566899999999999999999987655

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=92.92  E-value=0.054  Score=44.22  Aligned_cols=29  Identities=24%  Similarity=0.229  Sum_probs=25.2

Q ss_pred             cCCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           44 DVNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        44 ~~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ..+.+.|.|.|++|+|||.-++.+.+.+.
T Consensus        88 ~~~~Q~IiisGeSGaGKTe~~k~il~yL~  116 (710)
T d1br2a2          88 DREDQSILCTGESGAGKTENTKKVIQYLA  116 (710)
T ss_dssp             HTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             hCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            45668999999999999999999988774

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=92.86  E-value=0.057  Score=44.67  Aligned_cols=32  Identities=28%  Similarity=0.289  Sum_probs=25.9

Q ss_pred             HhccCCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           41 ALTDVNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        41 ~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ++...+.+.|.|.|++|+|||.-++.+...+.
T Consensus       117 m~~~~~~QsIiisGeSGaGKTe~~K~il~yL~  148 (794)
T d2mysa2         117 MLTDRENQSILITGESGAGKTVNTKRVIQYFA  148 (794)
T ss_dssp             HHHHTCCEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             HHHcCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            33345668999999999999999998887764

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=92.79  E-value=0.073  Score=38.06  Aligned_cols=25  Identities=24%  Similarity=0.460  Sum_probs=21.2

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      .-.++|+|.|.+|||||+..+..+-
T Consensus       112 ~~~v~vvG~PNvGKSsliN~L~~~~  136 (273)
T d1puja_         112 AIRALIIGIPNVGKSTLINRLAKKN  136 (273)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             ceEEEEEecCccchhhhhhhhhccc
Confidence            3458999999999999999988644

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.67  E-value=0.046  Score=37.06  Aligned_cols=19  Identities=21%  Similarity=0.037  Sum_probs=15.5

Q ss_pred             cEEEEEeCCCCcHHHHHHH
Q 035585           48 NIVGVYGMGGIGKTTLVKE   66 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~   66 (183)
                      +.+.|.+|+|+|||+.+..
T Consensus        41 ~~~il~apTGsGKT~~a~l   59 (202)
T d2p6ra3          41 KNLLLAMPTAAGKTLLAEM   59 (202)
T ss_dssp             SCEEEECSSHHHHHHHHHH
T ss_pred             CCEEEEcCCCCchhHHHHH
Confidence            4578999999999987643

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.62  E-value=0.044  Score=34.36  Aligned_cols=27  Identities=4%  Similarity=-0.148  Sum_probs=23.2

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHhHHhh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFARQASE   73 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~~~~~   73 (183)
                      .-.+++.|..|+||+|+|..+...+.+
T Consensus         6 gf~i~~tg~~~~gk~~ia~al~~~l~q   32 (122)
T d1g8fa3           6 GFSIVLGNSLTVSREQLSIALLSTFLQ   32 (122)
T ss_dssp             CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             ceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            346889999999999999999887765

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=92.28  E-value=0.069  Score=44.11  Aligned_cols=29  Identities=24%  Similarity=0.201  Sum_probs=24.8

Q ss_pred             cCCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           44 DVNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        44 ~~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      ....+.|.|.|++|+|||.-++.+...+.
T Consensus       118 ~~~nQ~IiisGESGaGKTe~~K~il~yL~  146 (789)
T d1kk8a2         118 DRENQSCLITGESGAGKTENTKKVIMYLA  146 (789)
T ss_dssp             HTSEEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             hCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            45668999999999999999988887665

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=92.23  E-value=0.075  Score=43.49  Aligned_cols=28  Identities=32%  Similarity=0.230  Sum_probs=23.8

Q ss_pred             cCCccEEEEEeCCCCcHHHHHHHHHhHH
Q 035585           44 DVNVNIVGVYGMGGIGKTTLVKEFARQA   71 (183)
Q Consensus        44 ~~~~~~v~i~G~~G~GKTtL~~~~~~~~   71 (183)
                      ..+.+.|.|.|++|+|||.-++.+.+.+
T Consensus        91 ~~~~Q~IiisGeSGsGKTe~~k~il~~l  118 (730)
T d1w7ja2          91 DERNQSIIVSGESGAGKTVSAKYAMRYF  118 (730)
T ss_dssp             HTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             hCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4566889999999999999999987655

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.70  E-value=0.14  Score=36.74  Aligned_cols=25  Identities=20%  Similarity=0.466  Sum_probs=21.6

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      ..+.++|+|.-.+|||||+.++...
T Consensus        25 ~~P~ivvvG~~SsGKSsliNaLlg~   49 (299)
T d2akab1          25 DLPQIAVVGGQSAGKSSVLENFVGR   49 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHhCC
Confidence            4566899999999999999999863

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=90.01  E-value=0.24  Score=35.58  Aligned_cols=25  Identities=16%  Similarity=0.351  Sum_probs=21.5

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      ..+.++|+|.-++|||||+.++...
T Consensus        23 ~lP~ivVvG~~ssGKSSliNaLlG~   47 (306)
T d1jwyb_          23 DLPQIVVVGSQSSGKSSVLENIVGR   47 (306)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHhCC
Confidence            3467899999999999999999853

>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Bacillus caldotenax [TaxId: 1395]

Probab=89.82  E-value=2  Score=32.34  Aligned_cols=38  Identities=24%  Similarity=0.327  Sum_probs=28.7

Q ss_pred             HHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHh
Q 035585           34 TLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQAS   72 (183)
Q Consensus        34 ~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~   72 (183)
                      .++.|.+.+.+. .+...|.|.+|+|||.++..++.+..
T Consensus        19 aI~~l~~~l~~g-~~~q~l~GltGS~ka~~iA~l~~~~~   56 (413)
T d1t5la1          19 AIAKLVDGLRRG-VKHQTLLGATGTGKTFTISNVIAQVN   56 (413)
T ss_dssp             HHHHHHHHHHHT-CSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcC-CCcEEEeCCCCcHHHHHHHHHHHHhC
Confidence            366777776533 35667889999999999988887654

>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V beta chain (RecB), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.62  E-value=0.11  Score=39.46  Aligned_cols=25  Identities=24%  Similarity=0.217  Sum_probs=19.1

Q ss_pred             ccEEEEEeCCCCcHH-HHHHHHHhHH
Q 035585           47 VNIVGVYGMGGIGKT-TLVKEFARQA   71 (183)
Q Consensus        47 ~~~v~i~G~~G~GKT-tL~~~~~~~~   71 (183)
                      .+.++|.+..|+||| +|+..+.+.+
T Consensus        16 ~g~~lv~A~AGsGKT~~l~~r~~~ll   41 (485)
T d1w36b1          16 QGERLIEASAGTGKTFTIAALYLRLL   41 (485)
T ss_dssp             SSCEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCeEEEEcCchHHHHHHHHHHHHHH
Confidence            357889999999999 5556666655

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=89.54  E-value=0.09  Score=38.52  Aligned_cols=18  Identities=39%  Similarity=0.759  Sum_probs=15.5

Q ss_pred             cEEEEEeCCCCcHHHHHH
Q 035585           48 NIVGVYGMGGIGKTTLVK   65 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~   65 (183)
                      .+.++.|.+|+|||||..
T Consensus        15 ~valffGLSGTGKTTLs~   32 (318)
T d1j3ba1          15 DVAVFFGLSGTGKTTLST   32 (318)
T ss_dssp             CEEEEEECTTSCHHHHTC
T ss_pred             CEEEEEccCCCCcccccc
Confidence            567889999999999854

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=89.44  E-value=0.16  Score=34.41  Aligned_cols=21  Identities=38%  Similarity=0.463  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHHh
Q 035585           49 IVGVYGMGGIGKTTLVKEFAR   69 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~   69 (183)
                      .++|.|-.+.|||||+.++..
T Consensus         5 ni~iiGHvd~GKSTL~~~l~~   25 (196)
T d1d2ea3           5 NVGTIGHVDHGKTTLTAAITK   25 (196)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            489999999999999998865

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=89.34  E-value=0.17  Score=34.30  Aligned_cols=24  Identities=38%  Similarity=0.462  Sum_probs=20.3

Q ss_pred             Ccc-EEEEEeCCCCcHHHHHHHHHh
Q 035585           46 NVN-IVGVYGMGGIGKTTLVKEFAR   69 (183)
Q Consensus        46 ~~~-~v~i~G~~G~GKTtL~~~~~~   69 (183)
                      +++ .|+|.|--..|||||+..+..
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITG   30 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHS
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHh
Confidence            444 599999999999999999864

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.68  E-value=0.15  Score=34.21  Aligned_cols=20  Identities=20%  Similarity=0.255  Sum_probs=17.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHH
Q 035585           49 IVGVYGMGGIGKTTLVKEFA   68 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~   68 (183)
                      +++|+|..++|||..|..++
T Consensus         1 iiLVtGGarSGKS~~AE~l~   20 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALI   20 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHH
T ss_pred             CEEEECCCCccHHHHHHHHH
Confidence            47899999999999998875

>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: DNA helicase UvsW
domain: DNA helicase UvsW
species: Bacteriophage T4 [TaxId: 10665]

Probab=88.62  E-value=0.79  Score=32.57  Aligned_cols=46  Identities=11%  Similarity=0.053  Sum_probs=34.1

Q ss_pred             ccccchHHHHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhh
Q 035585           26 EAFKSRLSTLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEE   74 (183)
Q Consensus        26 ~~~~gR~~~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~   74 (183)
                      ..+.-|+=+.+.+..++.+.   ...|.-+.|+|||.++..++..+...
T Consensus       110 ~~~~~rdyQ~~av~~~l~~~---~~il~~pTGsGKT~i~~~i~~~~~~~  155 (282)
T d1rifa_         110 KRIEPHWYQKDAVFEGLVNR---RRILNLPTSAGRSLIQALLARYYLEN  155 (282)
T ss_dssp             EECCCCHHHHHHHHHHHHHS---EEEECCCTTSCHHHHHHHHHHHHHHH
T ss_pred             CccccchHHHHHHHHHHhcC---CceeEEEcccCccHHHHHHHHHhhhc
Confidence            35777888888888887643   34666799999998887777665443

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=88.59  E-value=0.14  Score=37.28  Aligned_cols=18  Identities=39%  Similarity=0.759  Sum_probs=15.3

Q ss_pred             cEEEEEeCCCCcHHHHHH
Q 035585           48 NIVGVYGMGGIGKTTLVK   65 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~   65 (183)
                      .+.++.|.+|+|||||..
T Consensus        15 ~~alfFGLSGTGKTTLs~   32 (313)
T d2olra1          15 DVAVFFGLSGTGKTTLST   32 (313)
T ss_dssp             CEEEEECSTTSSHHHHHC
T ss_pred             CEEEEEccCCCCccccee
Confidence            567788999999999863

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=88.42  E-value=0.17  Score=33.86  Aligned_cols=21  Identities=38%  Similarity=0.491  Sum_probs=18.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHHh
Q 035585           49 IVGVYGMGGIGKTTLVKEFAR   69 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~   69 (183)
                      .|+|.|-.+.|||||+.++..
T Consensus         7 nIaiiGhvd~GKSTL~~~L~g   27 (195)
T d1kk1a3           7 NIGMVGHVDHGKTTLTKALTG   27 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEEeccCCcHHHHHHHHHh
Confidence            478999999999999999964

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=88.31  E-value=0.2  Score=34.43  Aligned_cols=21  Identities=33%  Similarity=0.267  Sum_probs=18.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHHh
Q 035585           49 IVGVYGMGGIGKTTLVKEFAR   69 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~   69 (183)
                      .|+|.|--+.|||||+.++..
T Consensus         5 Ni~viGHVd~GKTTL~~~Ll~   25 (224)
T d1jnya3           5 NLIVIGHVDHGKSTLVGRLLM   25 (224)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEecCCCCHHHHHHHHHH
Confidence            589999999999999988753

>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.06  E-value=0.25  Score=36.02  Aligned_cols=27  Identities=22%  Similarity=0.249  Sum_probs=19.8

Q ss_pred             HHHHhccCCccEEEEEeCCCCcHHHHH
Q 035585           38 IQDALTDVNVNIVGVYGMGGIGKTTLV   64 (183)
Q Consensus        38 l~~~l~~~~~~~v~i~G~~G~GKTtL~   64 (183)
                      +.+.+.+.....++.+|..|+|||..+
T Consensus        67 lv~~~l~G~n~~i~aYGqtgSGKTyT~   93 (323)
T d1bg2a_          67 IVKDVLEGYNGTIFAYGQTSSGKTHTM   93 (323)
T ss_dssp             HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred             HHHHHHcCCCcceeeecccCCCCceec
Confidence            333333556678999999999999665

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=87.68  E-value=0.21  Score=34.55  Aligned_cols=22  Identities=23%  Similarity=0.135  Sum_probs=19.0

Q ss_pred             cEEEEEeCCCCcHHHHHHHHHh
Q 035585           48 NIVGVYGMGGIGKTTLVKEFAR   69 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~~   69 (183)
                      ..++++|-...|||||+.++..
T Consensus        10 ~~i~viGHVd~GKSTL~~~Ll~   31 (222)
T d1zunb3          10 LRFLTCGNVDDGKSTLIGRLLH   31 (222)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEcCCCCCHHHHHHHHHH
Confidence            3478899999999999999864

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=87.28  E-value=0.16  Score=37.20  Aligned_cols=18  Identities=39%  Similarity=0.748  Sum_probs=15.2

Q ss_pred             cEEEEEeCCCCcHHHHHH
Q 035585           48 NIVGVYGMGGIGKTTLVK   65 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~   65 (183)
                      .+.++.|.+|+|||||..
T Consensus        15 d~alfFGLSGTGKTTLs~   32 (323)
T d1ii2a1          15 DVTVFFGLSGTGKTTLSA   32 (323)
T ss_dssp             CEEEEECCTTSSHHHHHC
T ss_pred             CEEEEEccCCCCccccee
Confidence            466788999999999973

>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Neurospora crassa [TaxId: 5141]

Probab=87.28  E-value=0.31  Score=36.05  Aligned_cols=21  Identities=29%  Similarity=0.338  Sum_probs=16.7

Q ss_pred             cCCccEEEEEeCCCCcHHHHH
Q 035585           44 DVNVNIVGVYGMGGIGKTTLV   64 (183)
Q Consensus        44 ~~~~~~v~i~G~~G~GKTtL~   64 (183)
                      +.....+..+|..|+|||..+
T Consensus        77 ~G~n~ti~aYG~tgSGKT~Tm   97 (354)
T d1goja_          77 NGYNGTVFAYGQTGAGKSYTM   97 (354)
T ss_dssp             TTCCEEEEEECSTTSSHHHHH
T ss_pred             ccCceeEEecccCCCCcceee
Confidence            555567999999999999543

>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]

Probab=86.29  E-value=0.44  Score=35.00  Aligned_cols=27  Identities=30%  Similarity=0.282  Sum_probs=19.1

Q ss_pred             HHHHhccCCccEEEEEeCCCCcHHHHH
Q 035585           38 IQDALTDVNVNIVGVYGMGGIGKTTLV   64 (183)
Q Consensus        38 l~~~l~~~~~~~v~i~G~~G~GKTtL~   64 (183)
                      +.+.+.+.....+..+|..|+|||..+
T Consensus        72 lv~~~l~G~n~~i~aYGqtgSGKTyTm   98 (345)
T d1x88a1          72 ILDEVIMGYNCTIFAYGQTGTGKTFTM   98 (345)
T ss_dssp             HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred             hHHHHhccCCceEEeeeeccccceEEe
Confidence            333333555678999999999999543

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.72  E-value=0.34  Score=33.75  Aligned_cols=21  Identities=29%  Similarity=0.184  Sum_probs=19.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHHh
Q 035585           49 IVGVYGMGGIGKTTLVKEFAR   69 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~   69 (183)
                      .|++.|--+.|||||+.++..
T Consensus         8 Ni~iiGHvD~GKsTl~~~ll~   28 (239)
T d1f60a3           8 NVVVIGHVDSGKSTTTGHLIY   28 (239)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            689999999999999988864

>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif2c [TaxId: 10090]

Probab=84.79  E-value=0.41  Score=35.50  Aligned_cols=21  Identities=29%  Similarity=0.343  Sum_probs=17.0

Q ss_pred             cCCccEEEEEeCCCCcHHHHH
Q 035585           44 DVNVNIVGVYGMGGIGKTTLV   64 (183)
Q Consensus        44 ~~~~~~v~i~G~~G~GKTtL~   64 (183)
                      +.....++.||..|+|||..+
T Consensus       111 ~G~n~tifaYGqTGSGKTyTm  131 (362)
T d1v8ka_         111 EGGKATCFAYGQTGSGKTHTM  131 (362)
T ss_dssp             TTCEEEEEEEESTTSSHHHHH
T ss_pred             hccCceEEeeccCCCCCceee
Confidence            555678889999999999554

>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif1a [TaxId: 10090]

Probab=84.60  E-value=0.52  Score=34.65  Aligned_cols=27  Identities=19%  Similarity=0.198  Sum_probs=19.6

Q ss_pred             HHHHhccCCccEEEEEeCCCCcHHHHH
Q 035585           38 IQDALTDVNVNIVGVYGMGGIGKTTLV   64 (183)
Q Consensus        38 l~~~l~~~~~~~v~i~G~~G~GKTtL~   64 (183)
                      +...+.+.....++.||..|+|||..+
T Consensus        78 lv~~~l~G~n~ti~aYGqTgSGKT~Tm  104 (349)
T d2zfia1          78 MLQHAFEGYNVCIFAYGQTGAGKSYTM  104 (349)
T ss_dssp             HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred             HHHHHHhccCceeeeeccCCCCCceee
Confidence            333333555578999999999999665

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=84.14  E-value=0.16  Score=36.27  Aligned_cols=21  Identities=19%  Similarity=0.542  Sum_probs=18.4

Q ss_pred             cEEEEEeCCCCcHHHHHHHHH
Q 035585           48 NIVGVYGMGGIGKTTLVKEFA   68 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~~~~~   68 (183)
                      ++.+|+|++|+|||+++.++.
T Consensus        25 ~lnvlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          25 RVTAIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             SEEEEECCTTTCSTHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHH
Confidence            578899999999999988774

>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]

Probab=83.92  E-value=0.53  Score=34.48  Aligned_cols=27  Identities=26%  Similarity=0.247  Sum_probs=18.9

Q ss_pred             HHHHhccCCccEEEEEeCCCCcHHHHH
Q 035585           38 IQDALTDVNVNIVGVYGMGGIGKTTLV   64 (183)
Q Consensus        38 l~~~l~~~~~~~v~i~G~~G~GKTtL~   64 (183)
                      +.+.+.+.....+.-||..|+|||..+
T Consensus        74 ~v~~~l~G~n~~i~aYGqtgSGKT~T~  100 (342)
T d1f9va_          74 LVQSSLDGYNVCIFAYGQTGSGKTFTM  100 (342)
T ss_dssp             HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred             hhcchhcccccceeeeeccCCcccccc
Confidence            333333555567889999999999554

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=83.56  E-value=0.34  Score=33.87  Aligned_cols=21  Identities=24%  Similarity=0.139  Sum_probs=18.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHHh
Q 035585           49 IVGVYGMGGIGKTTLVKEFAR   69 (183)
Q Consensus        49 ~v~i~G~~G~GKTtL~~~~~~   69 (183)
                      .|+|.|--+.|||||+.++..
T Consensus        26 Ni~iiGHVD~GKSTL~~~Ll~   46 (245)
T d1r5ba3          26 NIVFIGHVDAGKSTLGGNILF   46 (245)
T ss_dssp             EEEEEECGGGTHHHHHHHHHH
T ss_pred             EEEEEeeCCCCHHHHHHHHHH
Confidence            599999999999999999854

>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Thermus thermophilus [TaxId: 274]

Probab=83.16  E-value=2.6  Score=31.59  Aligned_cols=62  Identities=18%  Similarity=0.272  Sum_probs=40.6

Q ss_pred             HHHHHHHHhccCCccEEEEEeCCCCcHHHHHHHHHhHHhhhhcccceEEEEecCCcCHHHHHHHHHHHh
Q 035585           34 TLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKEFARQASEEKLFDQVVFSEVSQTPDIKKIHGEIAEKL  102 (183)
Q Consensus        34 ~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l  102 (183)
                      .++.|.+.+.+ +.+...|.|.+|++||.++..++.....     .++.+ +.+......+...+..-+
T Consensus        16 aI~~l~~~L~~-g~~~~~L~GlsgS~ka~~~A~l~~~~~r-----p~LvV-t~~~~~A~~l~~dL~~~l   77 (408)
T d1c4oa1          16 AIAGLVEALRD-GERFVTLLGATGTGKTVTMAKVIEALGR-----PALVL-APNKILAAQLAAEFRELF   77 (408)
T ss_dssp             HHHHHHHHHHT-TCSEEEEEECTTSCHHHHHHHHHHHHTC-----CEEEE-ESSHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhc-CCCcEEEecCCCCHHHHHHHHHHHHhCC-----CEEEE-eCCHHHHHHHHHHHHHhc
Confidence            37788887764 3466799999999999998888876543     23333 344344445555554444

>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=82.70  E-value=0.45  Score=34.72  Aligned_cols=23  Identities=30%  Similarity=0.284  Sum_probs=17.5

Q ss_pred             hccCCccEEEEEeCCCCcHHHHH
Q 035585           42 LTDVNVNIVGVYGMGGIGKTTLV   64 (183)
Q Consensus        42 l~~~~~~~v~i~G~~G~GKTtL~   64 (183)
                      +.+.....+..||..|+|||..+
T Consensus        80 ~~~G~n~~i~aYGqTGSGKTyTm  102 (330)
T d1ry6a_          80 YENGCVCSCFAYGQTGSGKTYTM  102 (330)
T ss_dssp             HHHCCEEEEEEECCTTSSHHHHH
T ss_pred             HhcCCCeEEEeeeccccccceee
Confidence            33455567899999999999554

>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin heavy chain-like protein
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=82.66  E-value=0.41  Score=35.49  Aligned_cols=21  Identities=33%  Similarity=0.343  Sum_probs=17.0

Q ss_pred             cCCccEEEEEeCCCCcHHHHH
Q 035585           44 DVNVNIVGVYGMGGIGKTTLV   64 (183)
Q Consensus        44 ~~~~~~v~i~G~~G~GKTtL~   64 (183)
                      ++....++.||..|+|||..+
T Consensus        72 ~G~n~~i~aYGqTGSGKTyTm   92 (364)
T d1sdma_          72 DGYNVCIFAYGQTGSGKTFTI   92 (364)
T ss_dssp             TTCEEEEEEECSTTSSHHHHH
T ss_pred             cCCceeeeccccCCCCccccc
Confidence            555678889999999999653

>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.83  E-value=5.1  Score=26.84  Aligned_cols=24  Identities=25%  Similarity=0.155  Sum_probs=16.7

Q ss_pred             cEEEEEeCCCCcHHHHH-HHHHhHH
Q 035585           48 NIVGVYGMGGIGKTTLV-KEFARQA   71 (183)
Q Consensus        48 ~~v~i~G~~G~GKTtL~-~~~~~~~   71 (183)
                      +.+.+.+++|+|||... --+.+.+
T Consensus        50 ~dvl~~a~TGsGKTlayllp~l~~i   74 (218)
T d2g9na1          50 YDVIAQAQSGTGKTATFAISILQQI   74 (218)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CCEEEEcccchhhhhhhhhhhhhee
Confidence            46889999999999543 3334443

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.46  E-value=0.31  Score=36.20  Aligned_cols=23  Identities=22%  Similarity=0.459  Sum_probs=19.5

Q ss_pred             ccEEEEEeCCCCcHHHHHHHHHh
Q 035585           47 VNIVGVYGMGGIGKTTLVKEFAR   69 (183)
Q Consensus        47 ~~~v~i~G~~G~GKTtL~~~~~~   69 (183)
                      .++.+|+|++|+|||+++.++.-
T Consensus        25 ~~l~~i~G~NGsGKS~ileAi~~   47 (427)
T d1w1wa_          25 SNFTSIIGPNGSGKSNMMDAISF   47 (427)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35778999999999999999853

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=81.26  E-value=0.87  Score=26.78  Aligned_cols=25  Identities=20%  Similarity=0.466  Sum_probs=20.5

Q ss_pred             CccEEEEEeCCCCcHHHHHHHHHhH
Q 035585           46 NVNIVGVYGMGGIGKTTLVKEFARQ   70 (183)
Q Consensus        46 ~~~~v~i~G~~G~GKTtL~~~~~~~   70 (183)
                      +..-+-+.|.+|+|.+.||+.+..+
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~   31 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNE   31 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHH
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhC
Confidence            3456889999999999998887664

>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecQ helicase domain
species: Escherichia coli [TaxId: 562]

Probab=81.05  E-value=0.36  Score=32.34  Aligned_cols=30  Identities=20%  Similarity=0.035  Sum_probs=20.1

Q ss_pred             HHHHHHHHhccCCccEEEEEeCCCCcHHHHHHH
Q 035585           34 TLKSIQDALTDVNVNIVGVYGMGGIGKTTLVKE   66 (183)
Q Consensus        34 ~l~~l~~~l~~~~~~~v~i~G~~G~GKTtL~~~   66 (183)
                      +.+.+...+.+   ..+.+..|+|+|||..+..
T Consensus        30 Q~~ai~~~l~g---~~vlv~apTGsGKT~~~~~   59 (206)
T d1oywa2          30 QEEIIDTVLSG---RDCLVVMPTGGGKSLCYQI   59 (206)
T ss_dssp             HHHHHHHHHTT---CCEEEECSCHHHHHHHHHH
T ss_pred             HHHHHHHHHcC---CCEEEEcCCCCCCcchhhh
Confidence            44445554432   4678899999999977543

>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=80.15  E-value=0.62  Score=34.54  Aligned_cols=26  Identities=27%  Similarity=0.239  Sum_probs=18.6

Q ss_pred             HHHHhccCCccEEEEEeCCCCcHHHH
Q 035585           38 IQDALTDVNVNIVGVYGMGGIGKTTL   63 (183)
Q Consensus        38 l~~~l~~~~~~~v~i~G~~G~GKTtL   63 (183)
                      +...+.+.....+..+|..|+|||..
T Consensus       116 lv~~vl~G~n~ti~aYGqtGSGKT~T  141 (368)
T d2ncda_         116 LIQSALDGYNICIFAYGQTGSGKTYT  141 (368)
T ss_dssp             HHHHHHTTCEEEEEEECSTTSSHHHH
T ss_pred             HHHHHhcccceeEEeeccCCCccceE
Confidence            33333355567889999999999954