Citrus Sinensis ID: 035622

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------
Protein Sequence
MEWLGLNHMHVYMVCLYDKIPADKMGKPFGFMNLVTAHWILVVIDVAAKTGYFMDPQGNSPAEHIKELVPKQPGSYECGYYVMLYMRDIIVDPSLLLNNAEMDEVRYERMNYVRVLI
Secondary Structure (PSIPRED)
cccccccEEEEEEEEEEccccccccccccccccccccEEEEEEEEcccEEEEEcccccccccccccccccccccEEEEcEEEEEEEEEEEEcccccEEEEEHHHEHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccHccccccEEEEEEEEccccccccccccccHHccccHEEEEEHHHHHHHHHHcccccccccHcHHHHccccccccHHHHHHHHHHHHHHccHHHHHcEEEHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mewlglnhMHVYMVCLYdkipadkmgkpfgfMNLVTAHWILVVIDVAAktgyfmdpqgnspaehikelvpkqpgsyecgyYVMLYMRDIivdpslllnnaemDEVRYERMNYVRVLI
Flexible Loop (DISEMBL)
mewlglnhMHVYMVCLYDKIPADKMGKPFGFMNLVTAHWILVVIDVAAKTGYFMDPQGNSPAEHIKELVPKQPGSYECGYYVMLYMRDIIVDPSLLLNNAEMDEVRYERMNYVRVLI
Low Complexity Region (SEG)
MEWLGLNHMHVYMVCLYDKIPADKMGKPFGFMNLVTAHWILVVIDVAAKTGYFMDPQGNSPAEHIKELVPKQPGSYECGYYVMLYMRDIIVDPSLLLNNAEMDEVRYERMNYVRVLI
Disordered region (IsUnstruct)
**WLGLNHMHVYMVCLYDKIPADKMGKPFGFMNLVTAHWILVVIDVAAKTGYFMD************LV*KQPGSYECGYYVMLYMRDIIVDPSLLLNNAEMDEVRYERMNYVRV**
Disordered Region (DISOPRED)
*EWLGLNHMHVYMVCLYDKIPADKMGKPFGFMNLVTAHWILVVIDVAAKTGYFMDPQGNSPAEHIKELVPKQPGSYECGYYVMLYMRDIIVDPSLLLNNAEMDEVRYERMNYVRVLI
Disordered Region (DISEMBL)
MEWLGLNHMHVYMVCLYDKIPADKMGKPFGFMNLVTAHWILVVIDVAAKTGYFMDPQGNSPAEHIKELVPKQPGSYECGYYVMLYMRDIIVDPSLLLNNAEMDEVRYERMNYVRVLI
Disordered Region (DISPRO)
*EWLGLNHMHVYMVCLYDKIPADKMGKPFGFMNLVTAHWILVVIDVAAKTGYFMDPQGNSPAEHIKELVPKQPGSYECGYYVMLYMRDIIVDPSLLLNNAEMDEVRYERMNYVRVLI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEWLGLNHMHVYMVCLYDKIPADKMGKPFGFMNLVTAHWILVVIDVAAKTGYFMDPQGNSPAEHIKELVPKQPGSYECGYYVMLYMRDIIVDPSLLLNNAEMDEVRYERMNYVRVLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	117
147845228	648	hypothetical protein VITISV_022577 [Viti	0.564	0.101	0.515	2e-12
147839092	1394	hypothetical protein VITISV_036906 [Viti	0.504	0.042	0.411	2e-11
147862302	1783	hypothetical protein VITISV_003642 [Viti	0.504	0.033	0.411	2e-11
147781440	228	hypothetical protein VITISV_043954 [Viti	0.658	0.337	0.443	5e-11
147832946	1388	hypothetical protein VITISV_038839 [Viti	0.547	0.046	0.453	6e-11
147799953	1464	hypothetical protein VITISV_030496 [Viti	0.606	0.048	0.377	8e-11
359485905	688	PREDICTED: uncharacterized protein LOC10	0.504	0.085	0.411	6e-10
147844766	312	hypothetical protein VITISV_028949 [Viti	0.504	0.189	0.4	4e-09
147767597	736	hypothetical protein VITISV_027850 [Viti	0.641	0.101	0.323	5e-09
359474690	1431	PREDICTED: uncharacterized protein LOC10	0.504	0.041	0.4	6e-09

>gi|147845228|emb|CAN79466.1| hypothetical protein VITISV_022577 [Vitis vinifera]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 44/66 (66%)

Query: 38  HWILVVIDVAAKTGYFMDPQGNSPAEHIKELVPKQPGSYECGYYVMLYMRDIIVDPSLLL 97
           HW+LV +D    T +++DP  N P + +KE+V  Q GS EC YYVM YM+DIIVDPSLL 
Sbjct: 426 HWVLVALDTRTLTAHYLDPMQNQPCDDLKEIVNIQLGSVECDYYVMRYMKDIIVDPSLLS 485

Query: 98  NNAEMD 103
              E +
Sbjct: 486 TKHETE 491

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147839092|emb|CAN59766.1| hypothetical protein VITISV_036906 [Vitis vinifera]

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/85 (41%), Positives = 45/85 (52%), Gaps = 26/85 (30%)

Query: 38   HWILVVIDVAAKTGYFMDPQGNSPAEHIKELV--------------------------PK 71
            HW+LV +D+   T Y++DP    P + +KE+V                          P+
Sbjct: 1245 HWVLVALDMRTMTAYYLDPMQKQPCDDLKEIVNMALRIHPPEKQRSSKREPTWVKVVCPR 1304

Query: 72   QPGSYECGYYVMLYMRDIIVDPSLL 96
            Q GS ECGYYVM YM+DIIVDPSLL
Sbjct: 1305 QLGSVECGYYVMRYMKDIIVDPSLL 1329

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147862302|emb|CAN79325.1| hypothetical protein VITISV_003642 [Vitis vinifera]

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/85 (41%), Positives = 45/85 (52%), Gaps = 26/85 (30%)

Query: 38   HWILVVIDVAAKTGYFMDPQGNSPAEHIKELV--------------------------PK 71
            HW+LV +D+   T Y++DP    P + +KE+V                          P+
Sbjct: 1570 HWVLVALDMRTMTAYYLDPXQKQPCDDLKEIVNMALRIHPPEKQRSSKREPTWVKVVCPR 1629

Query: 72   QPGSYECGYYVMLYMRDIIVDPSLL 96
            Q GS ECGYYVM YM+DIIVDPSLL
Sbjct: 1630 QLGSVECGYYVMRYMKDIIVDPSLL 1654

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147781440|emb|CAN73843.1| hypothetical protein VITISV_043954 [Vitis vinifera]

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 48/79 (60%), Gaps = 2/79 (2%)

Query: 38  HWILVVIDVAAKTGYFMDPQGNSPAEHIKELVPKQPGSYECGYYVMLYMRDIIVDPSLLL 97
           HW+LV +D+   T Y++DP    P + +KE+V  Q G+ ECGY VM Y+ DIIVDPSLL 
Sbjct: 135 HWVLVALDMRTMTMYYLDPMQKQPCDDLKEIVSIQLGTVECGYCVMRYIEDIIVDPSLLS 194

Query: 98  NNAEMDEVRYE--RMNYVR 114
              +  +  Y    +N VR
Sbjct: 195 TKFKGKKKSYSEVELNEVR 213

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147832946|emb|CAN66122.1| hypothetical protein VITISV_038839 [Vitis vinifera]

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 41/64 (64%)

Query: 38   HWILVVIDVAAKTGYFMDPQGNSPAEHIKELVPKQPGSYECGYYVMLYMRDIIVDPSLLL 97
            HW+LV +++     Y++DP    P +  KE+V  QPGS ECGYYVM YM++II +P+ L 
Sbjct: 1285 HWVLVALEMKRMITYYLDPMAYQPCDDFKEIVNIQPGSVECGYYVMRYMKEIIANPNQLT 1344

Query: 98   NNAE 101
               E
Sbjct: 1345 TKIE 1348

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147799953|emb|CAN74975.1| hypothetical protein VITISV_030496 [Vitis vinifera]

 Score = 70.9 bits (172), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 53/106 (50%), Gaps = 35/106 (33%)

Query: 38   HWILVVIDVAAKTGYFMDPQGNSPAEHIKELV--------------------------PK 71
            HW+LV +D+   T Y++DP    P + +KE+V                          P+
Sbjct: 1346 HWVLVALDMRTMTAYYLDPMQKQPCDDLKEIVNMALRIHPPEKQRSSKREPTWVKVVCPR 1405

Query: 72   QPGSYECGYYVMLYMRDIIVDPSLL---------LNNAEMDEVRYE 108
            Q GS ECGYYVM YM+DIIVDPSLL          +  E++EVR E
Sbjct: 1406 QLGSVECGYYVMRYMKDIIVDPSLLSTKFKGKKSYSEVELNEVRXE 1451

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485905|ref|XP_003633352.1| PREDICTED: uncharacterized protein LOC100250086 [Vitis vinifera]

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 45/85 (52%), Gaps = 26/85 (30%)

Query: 38  HWILVVIDVAAKTGYFMDPQGNSPAEHIKELV--------------------------PK 71
           HW+LV +D+   T Y++DP    P + +KE+V                          P+
Sbjct: 577 HWVLVALDMRTMTVYYLDPMQKQPCDDLKEIVNMALRIHPPEKQRSSKRKPTWVKVVCPR 636

Query: 72  QPGSYECGYYVMLYMRDIIVDPSLL 96
           Q GS ECGYYVM YM+DIIVDPSLL
Sbjct: 637 QLGSVECGYYVMRYMKDIIVDPSLL 661

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147844766|emb|CAN81234.1| hypothetical protein VITISV_028949 [Vitis vinifera]

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 44/85 (51%), Gaps = 26/85 (30%)

Query: 38  HWILVVIDVAAKTGYFMDPQGNSPAEHIKELVP--------------------------K 71
           HW+LV +D+   T Y++DP    P + +KE+V                           +
Sbjct: 200 HWVLVALDMRTMTAYYLDPMQKQPCDDLKEIVNMALRIHPPEKQRSSKREPTWVKVVCLR 259

Query: 72  QPGSYECGYYVMLYMRDIIVDPSLL 96
           Q GS ECGYYVM YM+DIIVDPSLL
Sbjct: 260 QLGSVECGYYVMRYMKDIIVDPSLL 284

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147767597|emb|CAN71251.1| hypothetical protein VITISV_027850 [Vitis vinifera]

 Score = 65.1 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 27/102 (26%)

Query: 22  ADKMGKPFGFMNLV-TAHWILVVIDVAAKTGYFMDPQGNSPAEHIKELV----------- 69
           A    +P  F N V   HW+LV +++     Y++DP  + P + ++E+V           
Sbjct: 590 ATSRAQPIDFPNDVFVFHWVLVALEMKRMITYYLDPMASQPCDDLEEIVNMAIRINPPEK 649

Query: 70  ---------------PKQPGSYECGYYVMLYMRDIIVDPSLL 96
                          P+QPGS ECGYYVM YM++II +P+ L
Sbjct: 650 QKTSKREPTWVKVVCPRQPGSVECGYYVMRYMKEIIANPNQL 691

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474690|ref|XP_003631515.1| PREDICTED: uncharacterized protein LOC100853127 [Vitis vinifera]

 Score = 64.7 bits (156), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 44/85 (51%), Gaps = 26/85 (30%)

Query: 38   HWILVVIDVAAKTGYFMDPQGNSPAEHIKELVP--------------------------K 71
            HW+LV +D+   T Y++DP    P + +KE+V                           +
Sbjct: 1240 HWVLVALDMRTMTAYYLDPMQKQPCDDLKEIVNMALRIHPPEKQRSSKREPTWVKVVCLR 1299

Query: 72   QPGSYECGYYVMLYMRDIIVDPSLL 96
            Q GS ECGYYVM YM+DIIVDPSLL
Sbjct: 1300 QLGSVECGYYVMRYMKDIIVDPSLL 1324

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	117
UNIPROTKB|H7C2F8	98	SENP5 "Sentrin-specific protea	0.581	0.693	0.246	0.00093

UNIPROTKB|H7C2F8 SENP5 "Sentrin-specific protease 5" [Homo sapiens (taxid:9606)]

 Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
 Identities = 17/69 (24%), Positives = 34/69 (49%)

Query:    38 HWILVVIDVAAKTGYFMDPQGNSPAEHIKELVPKQPGSYECGYYVMLYMRDIIVDPSLLL 97
             HW L+ + ++ +   F D QG    +   E +P+Q    +CG +V+ Y + + ++     
Sbjct:    17 HWSLITVTLSNRIISFYDSQGIH-FKFCVECIPQQKNDSDCGVFVLQYCKCLALEQPFQF 75

Query:    98 NNAEMDEVR 106
             +  +M  VR
Sbjct:    76 SQEDMPRVR 84


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.142   0.450    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      117       117   0.00091  102 3  11 22  0.44    30
                                                     29  0.46    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  583 (62 KB)
  Total size of DFA:  142 KB (2087 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.23u 0.10s 12.33t   Elapsed:  00:00:01
  Total cpu time:  12.23u 0.10s 12.33t   Elapsed:  00:00:01
  Start:  Fri May 10 00:37:16 2013   End:  Fri May 10 00:37:17 2013

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

No confident hit detected by STRING

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	117
pfam02902	216	pfam02902, Peptidase_C48, Ulp1 protease family, C-	6e-05
COG5160	578	COG5160, ULP1, Protease, Ulp1 family [Posttranslat	7e-04

>gnl|CDD|217278 pfam02902, Peptidase_C48, Ulp1 protease family, C-terminal catalytic domain

 Score = 40.2 bits (94), Expect = 6e-05
 Identities = 21/120 (17%), Positives = 39/120 (32%), Gaps = 39/120 (32%)

Query: 32  MNLVTAHWILVVIDVAAKTGYFMDPQGNSPAEHIKEL----------------------- 68
           +N    HW+L++I++  KT   +D   +   E +K+                        
Sbjct: 90  INWDGKHWVLLIINLPKKTITILDSLISLHTEAVKKRIRPIDNMLPYLMSEALKKEQDDP 149

Query: 69  ------------VPKQPGSYECGYYVM----LYMRDIIVDPSLLLNNAEMDEVRYERMNY 112
                       VP+QP S +CG YV+    L    +  +      + +    +     Y
Sbjct: 150 DLTPFEIKRLTKVPQQPNSGDCGPYVLKFIELLAEGVPFEFLTADKDVDRFRKKLAVDIY 209

This domain contains the catalytic triad Cys-His-Asn. Length = 216

>gnl|CDD|227489 COG5160, ULP1, Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

 Score = 37.2 bits (86), Expect = 7e-04
 Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 24/96 (25%)

Query: 35  VTAHWILVVIDVAAKT-------------------GYFMDPQ----GNSPAEHIKEL-VP 70
           ++ HW L +ID   K                     Y +D         P   +K   VP
Sbjct: 462 ISYHWFLAIIDNPKKNILYFDSLANTHDPVLEFLRSYLLDEYKIQHDKDPQIKMKHCKVP 521

Query: 71  KQPGSYECGYYVMLYMRDIIVDPSLLLNNAEMDEVR 106
           +Q    +CG +V +++R  + +P    +  +    R
Sbjct: 522 QQRNGSDCGVFVCMFIRYFLENPPEQFSKNDRPRAR 557

Length = 578

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	117
KOG0778	511	consensus Protease, Ulp1 family [Posttranslational	99.91
PLN03189	490	Protease specific for SMALL UBIQUITIN-RELATED MODI	99.88
PF02902	216	Peptidase_C48: Ulp1 protease family, C-terminal ca	99.85
COG5160	578	ULP1 Protease, Ulp1 family [Posttranslational modi	99.8
KOG3246	223	consensus Sentrin-specific cysteine protease (Ulp1	99.51
PF03290	423	Peptidase_C57: Vaccinia virus I7 processing peptid	96.5
PF00770	183	Peptidase_C5: Adenovirus endoprotease; InterPro: I	96.34
PRK14848	317	deubiquitinase SseL; Provisional	93.9
KOG0779	595	consensus Protease, Ulp1 family [Posttranslational	92.52
PRK11836	403	deubiquitinase; Provisional	92.28

>KOG0778 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=2.3e-24  Score=184.82  Aligned_cols=113  Identities=28%  Similarity=0.478  Sum_probs=99.1

Q ss_pred             CccchhHHHHHHHHhhhhccCC-CCCCceee----------------------------------ccCCCceeEEEEEec
Q 035622            2 EWLGLNHMHVYMVCLYDKIPAD-KMGKPFGF----------------------------------MNLVTAHWILVVIDV   46 (117)
Q Consensus         2 ~~ls~~~v~~yi~~l~~~~~~~-~~~~~y~F----------------------------------lnp~~~HW~L~vi~~   46 (117)
                      +||-=-||.||.-.|.|..... ++.+.|+|                                  |+. ++||+|+|||.
T Consensus       332 ~WLNDevINfYm~ll~ers~~~~~yp~~h~FnTFFy~kL~~~gy~~VkRWTk~v~if~~d~i~vPIH~-~vHW~l~vid~  410 (511)
T KOG0778|consen  332 NWLNDEVINFYMELLKERSKKDSKYPKVHAFNTFFYTKLVGRGYAGVKRWTKKVDIFDKDIIFVPIHL-GVHWCLAVIDL  410 (511)
T ss_pred             cchhHHHHHHHHHHHHhhccccCCCceEEEEechhhhhhhhcchHHHHhHhhccCccccceeEeeeec-CceEEEEEEEc
Confidence            7999999999999999999888 47777766                                  233 89999999999


Q ss_pred             CCceEEEEcCCCCCCccccc----------------------------ccccCCCCccccceeeehhhHHHhhCCCCcCC
Q 035622           47 AAKTGYFMDPQGNSPAEHIK----------------------------ELVPKQPGSYECGYYVMLYMRDIIVDPSLLLN   98 (117)
Q Consensus        47 ~~~~i~y~DSm~~~~~~~lk----------------------------~~ip~Q~ng~dCGyyVm~~m~~Ii~d~~~~fs   98 (117)
                      |++++.|||||++.|...+.                            +.+|||.||+|||+|||+|+++|.+|.+++||
T Consensus       411 r~k~i~y~DS~~~~~nr~~~aL~~Yl~~E~~~k~~~~~d~s~w~~~~~~~iP~Q~Ng~DCG~f~c~~~~~~s~~~p~~ft  490 (511)
T KOG0778|consen  411 REKTIEYYDSLGGGPNRICDALAKYLQDESRDKSKKDFDVSGWTIEFVQNIPQQRNGSDCGMFVCKYADYISRDVPLTFT  490 (511)
T ss_pred             ccceEEEeeccCCCCcchHHHHHHHHHHHHhhhhcCCCCccchhhhhhhccccccCCCccceEEeeechhhccCCCcccC
Confidence            99999999999977643221                            35799999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHhh
Q 035622           99 NAEMDEVRYERMNYVRV  115 (117)
Q Consensus        99 ~~~l~~vR~~wa~~~l~  115 (117)
                      |++|+++|++.|.-++.
T Consensus       491 q~dmp~fR~~m~~eI~~  507 (511)
T KOG0778|consen  491 QQDMPYFRKKMAKEILH  507 (511)
T ss_pred             hhhhHHHHHHHHHHHHh
Confidence            99999999999988765

>PLN03189 Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional

Probab=99.88  E-value=8.5e-23  Score=174.35  Aligned_cols=113  Identities=19%  Similarity=0.365  Sum_probs=92.8

Q ss_pred             CccchhHHHHHHHHhhhhc---------------------cCC-----------------------CCCCceeeccCCCc
Q 035622            2 EWLGLNHMHVYMVCLYDKI---------------------PAD-----------------------KMGKPFGFMNLVTA   37 (117)
Q Consensus         2 ~~ls~~~v~~yi~~l~~~~---------------------~~~-----------------------~~~~~y~Flnp~~~   37 (117)
                      +||.-.||.+|+-+|.+..                     ...                       ....+|.+||- +.
T Consensus       302 ~WLNDeVINfYm~LL~er~~~~p~~~~k~h~FNTFFytkL~~~~~~ygY~~VrRWTk~kKigv~Lfs~D~IFIPIh~-n~  380 (490)
T PLN03189        302 AWLNDEVINLYLELLKEREAREPKKFLKCHFFNTFFYKKLVSGKSGYDYKAVRRWTTQKKLGYHLIDCDKIFVPIHQ-EI  380 (490)
T ss_pred             CccCHHHHHHHHHHHHHhhhcCcccccceEEEehHHHHHHhhcCCcCChHHHHHHhhhcccccccccCceEEeeeec-CC
Confidence            6999999999999997642                     211                       01225666675 68


Q ss_pred             eeEEEEEecCCceEEEEcCCCCCCcccc----------------------------cccccCCCCccccceeeehhhHHH
Q 035622           38 HWILVVIDVAAKTGYFMDPQGNSPAEHI----------------------------KELVPKQPGSYECGYYVMLYMRDI   89 (117)
Q Consensus        38 HW~L~vi~~~~~~i~y~DSm~~~~~~~l----------------------------k~~ip~Q~ng~dCGyyVm~~m~~I   89 (117)
                      ||+|+|||++++++.|||||+......+                            ...+|+|.||+|||+|||+||+++
T Consensus       381 HWsLaVId~k~k~I~yyDSLgg~~~~vL~~L~rYL~~E~kdK~g~d~D~s~W~~~~~~~vPQQ~NG~DCGVFVL~yAE~~  460 (490)
T PLN03189        381 HWTLAVINKKDQKFQYLDSLKGRDPKILDALAKYYVDEVKDKSEKDIDVSSWEQEFVEDLPEQKNGYDCGMFMIKYIDFY  460 (490)
T ss_pred             eeEEEEEEcCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhhcCCCcchhcceeccCCCCCCCCCCCCHHHHHHHHHHHH
Confidence            9999999999999999999987764211                            134799999999999999999999


Q ss_pred             hhCCCCcCChhhHHHHHHHHHHHHhh
Q 035622           90 IVDPSLLLNNAEMDEVRYERMNYVRV  115 (117)
Q Consensus        90 i~d~~~~fs~~~l~~vR~~wa~~~l~  115 (117)
                      .++.++.|||++|+.+|++.+.=++.
T Consensus       461 SrG~~LtFSQeDMp~fRrRma~EIl~  486 (490)
T PLN03189        461 SRGLGLCFGQEHMPYFRLRTAKEILR  486 (490)
T ss_pred             cCCCCCCcChhhhHHHHHHHHHHHHH
Confidence            99999999999999999999986664

>PF02902 Peptidase_C48: Ulp1 protease family, C-terminal catalytic domain This family belongs to family C48 of the peptidase classification

Probab=99.85  E-value=2.4e-21  Score=144.09  Aligned_cols=88  Identities=31%  Similarity=0.564  Sum_probs=69.9

Q ss_pred             ceeeccCCCceeEEEEEecCCceEEEEcCCCCCCc-----cc-------c---------------------cccccCCCC
Q 035622           28 PFGFMNLVTAHWILVVIDVAAKTGYFMDPQGNSPA-----EH-------I---------------------KELVPKQPG   74 (117)
Q Consensus        28 ~y~Flnp~~~HW~L~vi~~~~~~i~y~DSm~~~~~-----~~-------l---------------------k~~ip~Q~n   74 (117)
                      +|.++|-++.||+|++||++.+++++|||+++...     ..       +                     ...+|+|+|
T Consensus        86 i~iPin~~~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~pqQ~n  165 (216)
T PF02902_consen   86 IFIPININNNHWVLLVIDLPKKRIYVYDSLGSSNNDKRYKRVIENIIPFLKREYKKKEGRDPDKSPFKIVRPPNVPQQPN  165 (216)
T ss_dssp             EEEEEEETTTEEEEEEEETTTTEEEEE-TTSTSSH-HHHHHHHHHHHHHHHHHHHHHHSSCT-TTTCEEEEECTS-SSSS
T ss_pred             EEEEEechhhccceeEEcccccEEEEEeccccccccccchhhhhhhhhhhhhccccccccccccceeeecccccccCCCC
Confidence            35556666899999999999999999999998887     10       0                     024699999


Q ss_pred             ccccceeeehhhHHHhhCCCCc----CChhhHHHHHHHHHHHHhh
Q 035622           75 SYECGYYVMLYMRDIIVDPSLL----LNNAEMDEVRYERMNYVRV  115 (117)
Q Consensus        75 g~dCGyyVm~~m~~Ii~d~~~~----fs~~~l~~vR~~wa~~~l~  115 (117)
                      |+|||+|||+||++++.+++..    +++++++.+|+++|.-+-+
T Consensus       166 ~~dCGv~vl~~~~~~~~~~~~~~~~~l~~~~i~~~r~~~a~~~~e  210 (216)
T PF02902_consen  166 GYDCGVYVLKFMECLLEGPSFDFSQELTEEDIKNFRKKLAVDLYE  210 (216)
T ss_dssp             SSCHHHHHHHHHHHHHCTHHSTGCCSBTGHHHHHHHHHHHH----
T ss_pred             CCCcHHHHHHHHHHHHhCCCCcccccCCHHHHHHHHHHHHhhccc
Confidence            9999999999999999977666    7899999999999976543

; InterPro: IPR003653 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins contain cysteine peptidases belonging to MEROPS peptidase family C48 (Ulp1 endopeptidase family, clan CE). The protein fold of the peptidase domain for members of this family resembles that of adenain, the type example for clan CE. This group of sequences also contains a number of hypothetical proteins, which have not yet been characterised, and non-peptidase homologues. These are proteins that have either been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of the peptidases in the family. The Ulp1 endopeptidase family contain the deubiquitinating enzymes (DUB) that can de-conjugate ubiquitin or ubiquitin-like proteins from ubiquitin-conjugated proteins. They can be classified in 3 families according to sequence homology [, ]: Ubiquitin carboxyl-terminal hydrolase (UCH) (see PDOC00127 from PROSITEDOC), Ubiquitin-specific processing protease (UBP) (see PDOC00750 from PROSITEDOC), and ubiquitin-like protease (ULP) specific for de-conjugating ubiquitin-like proteins. In contrast to the UBP pathway, which is very redundant (16 UBP enzymes in yeast), there are few ubiquitin-like proteases (only one in yeast, Ulp1). Ulp1 catalyses two critical functions in the SUMO/Smt3 pathway via its cysteine protease activity. Ulp1 processes the Smt3 C-terminal sequence (-GGATY) to its mature form (-GG), and it de-conjugates Smt3 from the lysine epsilon-amino group of the target protein []. Crystal structure of yeast Ulp1 bound to Smt3 [] revealed that the catalytic and interaction interface is situated in a shallow and narrow cleft where conserved residues recognise the Gly-Gly motif at the C-terminal extremity of Smt3 protein. Ulp1 adopts a novel architecture despite some structural similarity with other cysteine protease. The secondary structure is composed of seven alpha helices and seven beta strands. The catalytic domain includes the central alpha helix, beta-strands 4 to 6, and the catalytic triad (Cys-His-Asp). This profile is directed against the C-terminal part of ULP proteins that displays full proteolytic activity [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1EUV_A 2HL8_A 2HKP_A 2HL9_A 1XT9_A 2BKQ_C 2BKR_A 2IO1_E 1TH0_B 1TGZ_A ....

>COG5160 ULP1 Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=1.1e-19  Score=156.32  Aligned_cols=113  Identities=22%  Similarity=0.427  Sum_probs=93.2

Q ss_pred             CccchhHHHHHHHHhhhhccCC-CCCC----------------------------------ceeeccCCCceeEEEEEec
Q 035622            2 EWLGLNHMHVYMVCLYDKIPAD-KMGK----------------------------------PFGFMNLVTAHWILVVIDV   46 (117)
Q Consensus         2 ~~ls~~~v~~yi~~l~~~~~~~-~~~~----------------------------------~y~Flnp~~~HW~L~vi~~   46 (117)
                      +||--.+|-||.-++-+....+ ....                                  +|.++|. ..||+|++||.
T Consensus       395 ~wLNDtIIdFy~k~ls~~sk~~s~~~~vh~FnTFFYT~LsrrGy~gVrrW~kk~dif~~k~I~iPIni-~~HW~l~II~~  473 (578)
T COG5160         395 DWLNDTIIDFYMKLLSKISKNTSKREQVHLFNTFFYTKLSRRGYSGVRRWTKKTDIFSKKYIFIPINI-SYHWFLAIIDN  473 (578)
T ss_pred             cchhhHHHHHHHHHHHHhccCcccccceEEeehhhHHHHHHHHhHHHHHHHhccCccccceEEEEecc-cceEEEEEeec
Confidence            5888889999888885544444 2333                                  3444555 89999999999


Q ss_pred             CCceEEEEcCCCCCCcccc------------------------cccccCCCCccccceeeehhhHHHhhCCCCcCChhhH
Q 035622           47 AAKTGYFMDPQGNSPAEHI------------------------KELVPKQPGSYECGYYVMLYMRDIIVDPSLLLNNAEM  102 (117)
Q Consensus        47 ~~~~i~y~DSm~~~~~~~l------------------------k~~ip~Q~ng~dCGyyVm~~m~~Ii~d~~~~fs~~~l  102 (117)
                      +++.+.|+|||++.+...+                        +..||||+||+|||+|||++.++..++++..|++.++
T Consensus       474 ~~~~i~~~DSLan~~~~v~~~L~~Y~ldE~k~~~~k~~~~~~~~~~vPqQ~Ng~DCGV~vc~~~~~~~~~~p~~f~~nd~  553 (578)
T COG5160         474 PKKNILYFDSLANTHDPVLEFLRSYLLDEYKIQHDKDPQIKMKHCKVPQQRNGSDCGVFVCMFIRYFLENPPEQFSKNDR  553 (578)
T ss_pred             CcceeEEecccccCcHHHHHHHHHHHHHHHhcccCCchhhhhhcCCCCCCCCCCccceEEEEeeeecccCChhhcCccch
Confidence            9999999999999985421                        1358999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 035622          103 DEVRYERMNYVRV  115 (117)
Q Consensus       103 ~~vR~~wa~~~l~  115 (117)
                      ++.|+..|+-+..
T Consensus       554 ~r~Rk~m~h~i~~  566 (578)
T COG5160         554 PRARKNMAHTIKD  566 (578)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999987653

>KOG3246 consensus Sentrin-specific cysteine protease (Ulp1 family) [General function prediction only]

Probab=99.51  E-value=3.3e-14  Score=111.57  Aligned_cols=81  Identities=23%  Similarity=0.340  Sum_probs=64.9

Q ss_pred             CceeEEEEEecCCceEEEEcCCCCCCccccc-------------------ccccCCCCccccceeeehhhHHHhh----C
Q 035622           36 TAHWILVVIDVAAKTGYFMDPQGNSPAEHIK-------------------ELVPKQPGSYECGYYVMLYMRDIIV----D   92 (117)
Q Consensus        36 ~~HW~L~vi~~~~~~i~y~DSm~~~~~~~lk-------------------~~ip~Q~ng~dCGyyVm~~m~~Ii~----d   92 (117)
                      |.||+|+|+..++++-+||||+++.+..+.+                   ..|+||.||||||.+||-+.+.+..    +
T Consensus       107 GsHWSLLV~sr~~~~f~hyDS~~n~nt~~a~~l~~kl~~ll~~~~~~~~~~~~~qQqNgyDCG~hV~~~t~~l~~~~~~~  186 (223)
T KOG3246|consen  107 GSHWSLLVFSRPDGKFYHYDSLSNGNTKDAKSLMKKLRALLKKKFAKRVECKCLQQQNGYDCGLHVCCNTRVLAERLLRC  186 (223)
T ss_pred             CcceEEEEEEeeCCcEEEeecccCCCcHHHHHHHHHHHHHHhhhhhhcccccChhhhcCCchhHHHHHHHHHHHHHHhcc
Confidence            6899999999999999999999988865432                   4578999999999999998777766    5


Q ss_pred             CCCc----CChhhHHHHHHHHHHHHhhh
Q 035622           93 PSLL----LNNAEMDEVRYERMNYVRVL  116 (117)
Q Consensus        93 ~~~~----fs~~~l~~vR~~wa~~~l~l  116 (117)
                      |-.+    .+.+-++++|+.|..++..|
T Consensus       187 ~~~~~~~~~~~~~i~~lr~~l~~LI~sl  214 (223)
T KOG3246|consen  187 PYATSSQLLVVDLIKALREELLDLIQSL  214 (223)
T ss_pred             ccccccchhhHHHHHHHHHHHHHHHHHh
Confidence            5444    34467778888888777654

>PF03290 Peptidase_C57: Vaccinia virus I7 processing peptidase; InterPro: IPR004970 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.50  E-value=0.0029  Score=53.98  Aligned_cols=64  Identities=30%  Similarity=0.541  Sum_probs=52.1

Q ss_pred             CCCceeEEEEEecCCceEEEEcCCCCCCcc--ccc------------------------------------c-------c
Q 035622           34 LVTAHWILVVIDVAAKTGYFMDPQGNSPAE--HIK------------------------------------E-------L   68 (117)
Q Consensus        34 p~~~HW~L~vi~~~~~~i~y~DSm~~~~~~--~lk------------------------------------~-------~   68 (117)
                      ....||.-+++|-+++.+++|||-|.-|.+  +-+                                    .       -
T Consensus       239 cY~~Hwkc~IfDk~~~~v~FydSgG~~P~efhhy~nfyFysfs~gfn~n~~~~s~l~n~n~dIDVLfrfF~d~f~~~~gc  318 (423)
T PF03290_consen  239 CYMSHWKCCIFDKEKKIVYFYDSGGNIPEEFHHYKNFYFYSFSDGFNRNNKSTSNLDNENCDIDVLFRFFEDSFGVKYGC  318 (423)
T ss_pred             eehhcceEEEEeccccEEEEEcCCCCCHHHcCcCCceEEEEccCccccCCCcccccccccCchHHHHHHHHhhcccceeE
Confidence            447899999999999999999999988854  100                                    0       0


Q ss_pred             cc---CCCCccccceeeehhhHHHhhCCCCcC
Q 035622           69 VP---KQPGSYECGYYVMLYMRDIIVDPSLLL   97 (117)
Q Consensus        69 ip---~Q~ng~dCGyyVm~~m~~Ii~d~~~~f   97 (117)
                      +|   -|.-++|||+|.+-||-.++..|+..|
T Consensus       319 iNvevnQl~eseCGMF~~iFm~~c~~~ppk~f  350 (423)
T PF03290_consen  319 INVEVNQLLESECGMFISIFMILCTLTPPKGF  350 (423)
T ss_pred             EEhhhhhhcccccchHHHHHHHHHHccCchhH
Confidence            12   499999999999999999999988766

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This is a group of cysteine peptidases which constitute MEROPS peptidase family C57 (clan CE). The type example is vaccinia virus I7 processing peptidase (vaccinia virus); protein I7 is expressed in the late phase of infection [].

>PF00770 Peptidase_C5: Adenovirus endoprotease; InterPro: IPR000855 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.34  E-value=0.0029  Score=48.80  Aligned_cols=56  Identities=25%  Similarity=0.537  Sum_probs=35.6

Q ss_pred             CceeEEEEEecCCceEEEEcCCCCCCcc------------------------ccccc---cc-CCCCccccceeeehhhH
Q 035622           36 TAHWILVVIDVAAKTGYFMDPQGNSPAE------------------------HIKEL---VP-KQPGSYECGYYVMLYMR   87 (117)
Q Consensus        36 ~~HW~L~vi~~~~~~i~y~DSm~~~~~~------------------------~lk~~---ip-~Q~ng~dCGyyVm~~m~   87 (117)
                      ++||.-.+-||+.++.|.|||+|-...+                        +++-+   -- |=++|--||.|.|-|.-
T Consensus        33 GvHWlA~Aw~P~s~t~YmFDPfGfsd~~L~qiY~FeYe~llrRSAL~~~~dRCv~LvkstqtVQ~p~SaaCGLFC~lFL~  112 (183)
T PF00770_consen   33 GVHWLAFAWDPRSRTFYMFDPFGFSDQKLKQIYQFEYEGLLRRSALSSTPDRCVTLVKSTQTVQCPCSAACGLFCCLFLH  112 (183)
T ss_dssp             -S-EEEEEEETTTTEEEEE-TT---HHHHHHHH----HHHHHHHHHHH-TTSEEEEEEE-EE-S-TT---HHHHHHHHHH
T ss_pred             ceeEEEEEecCCcceEEEeCCCCCCHHHHHHHHhhhHHHHHHHHhhcCCCCceEEEEeccceeeccCchhHHHHHHHHHH
Confidence            8999999999999999999999854322                        22111   01 34689999999999998


Q ss_pred             HHhh
Q 035622           88 DIIV   91 (117)
Q Consensus        88 ~Ii~   91 (117)
                      .+..
T Consensus       113 aF~~  116 (183)
T PF00770_consen  113 AFVH  116 (183)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8887

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine aminopeptidases belong to the peptidase family C5 (adenain family, clan CE). Several adenovirus proteins are synthesised as precursors, requiring processing by a protease before the virion is assembled [, ]. Until recently, the adenovirus endopeptidase was classified as a serine protease, having been reported to be inhibited by serine protease inhibitors [, ]. However, it has since been shown to be inhibited by cysteine protease inhibitors, and the catalytic residues are believed to be His-54 and Cys-104 [, ].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1NLN_A 1AVP_A.

>PRK14848 deubiquitinase SseL; Provisional

Probab=93.90  E-value=0.062  Score=44.12  Aligned_cols=78  Identities=14%  Similarity=0.241  Sum_probs=50.9

Q ss_pred             HhhhhccCCCCCCceeeccCCCceeEEEEEecCCc--eEEEEcCCCCCCcccccccc-------------------c-CC
Q 035622           15 CLYDKIPADKMGKPFGFMNLVTAHWILVVIDVAAK--TGYFMDPQGNSPAEHIKELV-------------------P-KQ   72 (117)
Q Consensus        15 ~l~~~~~~~~~~~~y~Flnp~~~HW~L~vi~~~~~--~i~y~DSm~~~~~~~lk~~i-------------------p-~Q   72 (117)
                      -|+|+....++...=+|+--.+.||+|+.+--=.+  +-+-|+|...-....+++++                   + ||
T Consensus       177 ~L~E~i~~s~~~~nevF~INtg~HWil~~~~Ki~~kiKC~iFNs~~~l~eNs~~~ii~~ak~ag~~~e~di~fIe~nLQq  256 (317)
T PRK14848        177 QLLEKIAQSGLSHNEVFLINTGDHWLLCLFYKLAEKIKCLIFNTYYDLNENTKQEIIEAAKIAGISENEDVNFIETNLQN  256 (317)
T ss_pred             HHHhhhhhcCCCcceEEEecCCCcEEEEEhHHhhhhceEEEeecHhhhhhhHHHHHHHHHHhhCcccCCceEEeehhhhh
Confidence            36788877777776667533599999988743222  33567776544433333222                   2 56


Q ss_pred             CCccccceeeehhhHHHhhC
Q 035622           73 PGSYECGYYVMLYMRDIIVD   92 (117)
Q Consensus        73 ~ng~dCGyyVm~~m~~Ii~d   92 (117)
                      --+.-||-|||.+++-+..+
T Consensus       257 nVpngCGlFv~~aIq~l~~~  276 (317)
T PRK14848        257 NVPNGCGLFCYHTIQLLSNA  276 (317)
T ss_pred             hCCCcchHHHHHHHHHHHhc
Confidence            66688999999999866554

>KOG0779 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

Probab=92.52  E-value=0.062  Score=47.85  Aligned_cols=47  Identities=28%  Similarity=0.430  Sum_probs=40.2

Q ss_pred             cCCCCccccceeeehhhHHHhhCCCCc-------------CChhhHHHHHHHHHHHHhhh
Q 035622           70 PKQPGSYECGYYVMLYMRDIIVDPSLL-------------LNNAEMDEVRYERMNYVRVL  116 (117)
Q Consensus        70 p~Q~ng~dCGyyVm~~m~~Ii~d~~~~-------------fs~~~l~~vR~~wa~~~l~l  116 (117)
                      |+|.|.+|||.|+-.|++..+.||...             |.+.++.++|.+-.+..+.|
T Consensus       528 p~q~n~~dcG~~~~~~v~~f~e~~~e~~~~~~~~~~~l~~~~~~~~~~~r~~~r~~~~~l  587 (595)
T KOG0779|consen  528 PQQNNDVDCGSFVLEFVERFIEDAPERFNIEDEGTINLEWFPPKEILKFRDEIRNLGRKL  587 (595)
T ss_pred             cCccCcccchhhHHHHHHHhhhChhhhcccccccccccccCCchHHhhhhhhhhcccccc
Confidence            689999999999999999999988764             66788899998887776654

>PRK11836 deubiquitinase; Provisional

Probab=92.28  E-value=0.29  Score=41.18  Aligned_cols=78  Identities=22%  Similarity=0.366  Sum_probs=48.2

Q ss_pred             HhhhhccCCCC--CCceee-ccCCCceeEEEEEecC--------CceEEEEcCCCCCCcc---ccccc------------
Q 035622           15 CLYDKIPADKM--GKPFGF-MNLVTAHWILVVIDVA--------AKTGYFMDPQGNSPAE---HIKEL------------   68 (117)
Q Consensus        15 ~l~~~~~~~~~--~~~y~F-lnp~~~HW~L~vi~~~--------~~~i~y~DSm~~~~~~---~lk~~------------   68 (117)
                      -|+|+....|+  .+.=.| +| .+.||+|+.+--=        +-+-+-|+|...-..+   .++++            
T Consensus       206 ~L~E~i~~~~~~~k~~elFpIN-tg~HWil~~l~Ki~~~~~~~ekiKC~IFNs~~~l~~d~~~t~q~ii~a~~~~~~~~~  284 (403)
T PRK11836        206 ALNENIKSDPSWPKEVQLFPIN-TGGHWILVSLQKIVNEKNNTQQIKCVIFNSLRALGHDKENSLKRVINSFNSELMGEM  284 (403)
T ss_pred             HHHHhhhcCCCCcccceEEEec-CCCcEEEEEeHHhhhcccccceeEEEEEecHhhhccchhhHHHHHHHhhhhhhhhhc
Confidence            36777777776  455555 46 5999999887321        1123566665433222   22211            


Q ss_pred             -------------c-----c-CCCCccccceeeehhhHHHhhCC
Q 035622           69 -------------V-----P-KQPGSYECGYYVMLYMRDIIVDP   93 (117)
Q Consensus        69 -------------i-----p-~Q~ng~dCGyyVm~~m~~Ii~d~   93 (117)
                                   |     + ||--+.-||-|||+-+.+.+...
T Consensus       285 ~~~~ik~~~~e~ei~fie~dLQq~vpngCGlFv~~a~Qe~i~q~  328 (403)
T PRK11836        285 SNNNIKVHLTEPEIIFLHADLQQYLSQSCGAFVCMAAQEVIEQR  328 (403)
T ss_pred             chhhhcccccCCceEEEechhhhcCCCccceehHHHHHHHHHHh
Confidence                         1     2 56667889999999999888743

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	117
1euv_A	221	X-Ray Structure Of The C-Terminal Ulp1 Protease Dom		8e-05

>pdb|1EUV|A Chain A, X-Ray Structure Of The C-Terminal Ulp1 Protease Domain In Complex With Smt3, The Yeast Ortholog Of Sumo Length = 221

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 26/92 (28%)
Query: 19  KIPADKMGKPFGFMNLVTAHWILVVIDVAAKTGYFMDPQGNSPA---------------E 63
           K   DK+ K F  +NL  +HW L +ID+  KT  ++D   N P                E
Sbjct: 95  KTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVME 154
Query: 64  HIKELV-----------PKQPGSYECGYYVML 84
             K  +           P+QP  Y+CG YV +
Sbjct: 155 ESKHTIGEDFDLIHLDCPQQPNGYDCGIYVCM 186

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	117
1euv_A	221	ULP1 protease; SUMO hydrolase, ubiquitin-like prot	2e-06
2xph_A	238	Sentrin-specific protease 1; hydrolase, cysteine p	6e-06
2bkr_A	212	Sentrin-specific protease 8; protein-binding-hydro	6e-06
2oix_A	186	Xanthomonas outer protein D; CLAN CE family 48 cys	3e-05
1th0_A	226	SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE	3e-04

>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A Length = 221

 Score = 43.6 bits (102), Expect = 2e-06
 Identities = 29/128 (22%), Positives = 45/128 (35%), Gaps = 26/128 (20%)

Query: 7   NHMHVYMVCLYDKIPADKMGKPFGFMNLVTAHWILVVIDVAAKTGYFMDPQGNSPAEHIK 66
            +  V       K   DK+ K F  +NL  +HW L +ID+  KT  ++D   N P     
Sbjct: 83  GYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAMSF 142

Query: 67  ELV--------------------------PKQPGSYECGYYVMLYMRDIIVDPSLLLNNA 100
            ++                          P+QP  Y+CG YV +       D  L  +  
Sbjct: 143 AILTDLQKYVMEESKHTIGEDFDLIHLDCPQQPNGYDCGIYVCMNTLYGSADAPLDFDYK 202

Query: 101 EMDEVRYE 108
           +   +R  
Sbjct: 203 DAIRMRRF 210

>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A Length = 238

 Score = 42.5 bits (99), Expect = 6e-06
 Identities = 19/102 (18%), Positives = 27/102 (26%), Gaps = 30/102 (29%)

Query: 37  AHWILVVIDVAAKTGYFMDPQGNSPAEHIKEL---------------------------- 68
            HW L V+D   K   + D  G    E  + L                            
Sbjct: 126 VHWCLAVVDFRKKNITYYDSMGGINNEACRILLQYLKQESIDKKRKEFDTNGWQLFSKKS 185

Query: 69  --VPKQPGSYECGYYVMLYMRDIIVDPSLLLNNAEMDEVRYE 108
             +P+Q    +CG +   Y   I  D  +      M   R  
Sbjct: 186 QEIPQQMNGSDCGMFACKYADCITKDRPINFTQQHMPYFRKR 227

>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A Length = 212

 Score = 42.4 bits (99), Expect = 6e-06
 Identities = 17/101 (16%), Positives = 31/101 (30%), Gaps = 21/101 (20%)

Query: 38  HWILVVIDVAAKTGYFMDPQGNSPAEHIKEL---------------------VPKQPGSY 76
           HW L+V      + +  D    S + H K++                      P Q  SY
Sbjct: 102 HWSLLVYLQDKNSFFHYDSHSRSNSVHAKQVAEKLEAFLGRKGDKLAFVEEKAPAQQNSY 161

Query: 77  ECGYYVMLYMRDIIVDPSLLLNNAEMDEVRYERMNYVRVLI 117
           +CG YV+     +  +       + +  +    +   R   
Sbjct: 162 DCGMYVICNTEALCQNFFRQQTESLLQLLTPAYITKKRGEW 202

>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A Length = 186

 Score = 40.4 bits (94), Expect = 3e-05
 Identities = 20/133 (15%), Positives = 41/133 (30%), Gaps = 27/133 (20%)

Query: 6   LNHMHVYMVCLYDKIPADKMGKPFGFM--NLVTAHWILVVIDV---AAKTGYFMD--PQG 58
           L+           ++ A     P  F+  N   AHW L+V+D     A   Y  D   Q 
Sbjct: 41  LSSADPDQQARAQRLLAGDDIPPIVFLPINQPNAHWSLLVVDRRNKDAVAAYHYDSMAQK 100

Query: 59  NSPAEHIKEL----------------VPKQPGSYECGYYVMLYMRDIIVDPSLLLNNAEM 102
           +    ++ ++                +  Q   Y  G +V+  +  +    +  + +   
Sbjct: 101 DPQQRYLADMAAYHLGLDYQQTHEMPIAIQSDGYSAGDHVLTGIEVL----AHRVLDGTF 156

Query: 103 DEVRYERMNYVRV 115
           D      +  +  
Sbjct: 157 DYAGGRDLTDIEP 169

>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A Length = 226

 Score = 37.5 bits (86), Expect = 3e-04
 Identities = 21/106 (19%), Positives = 34/106 (32%), Gaps = 31/106 (29%)

Query: 37  AHWILVVIDVAAKTGYFMDPQGNSPAEHIKEL---------------------------- 68
            HW LVVID+  K   ++D  G       + L                            
Sbjct: 114 VHWSLVVIDLRKKCLKYLDSMGQKGHRICEILLQYLQDESKTKRNSDLNLLEWTHHSMKP 173

Query: 69  --VPKQPGSYECGYYVMLYMRDIIVDPSLLLNNAEMDEVRYERMNY 112
             +P+Q    +CG +   Y   I  D  +     +M   R ++M +
Sbjct: 174 HEIPQQLNGSDCGMFTCKYADYISRDKPITFTQHQMPLFR-KKMVW 218

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	117
2xph_A	238	Sentrin-specific protease 1; hydrolase, cysteine p	99.91
1euv_A	221	ULP1 protease; SUMO hydrolase, ubiquitin-like prot	99.91
1th0_A	226	SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE	99.91
2bkr_A	212	Sentrin-specific protease 8; protein-binding-hydro	99.91
2oix_A	186	Xanthomonas outer protein D; CLAN CE family 48 cys	99.9
3eay_A	323	Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq	99.74
4ekf_A	204	Adenain; alpha and beta protein (A+B), hydrolase;	96.95

>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A

Probab=99.91  E-value=1.1e-24  Score=167.99  Aligned_cols=113  Identities=21%  Similarity=0.360  Sum_probs=93.3

Q ss_pred             CccchhHHHHHHHHhhhhccCCCCCC----------------------------------ceeeccCCCceeEEEEEecC
Q 035622            2 EWLGLNHMHVYMVCLYDKIPADKMGK----------------------------------PFGFMNLVTAHWILVVIDVA   47 (117)
Q Consensus         2 ~~ls~~~v~~yi~~l~~~~~~~~~~~----------------------------------~y~Flnp~~~HW~L~vi~~~   47 (117)
                      +||.-++|.+|+.+|.+.....+..+                                  +|.++|- +.||+|++||.+
T Consensus        58 ~wLND~iI~fy~~~L~~~~~~~~~~~~~~f~sff~~~l~~~~~~~v~~w~~~~~l~~~~~i~iPin~-~~HW~L~vi~~~  136 (238)
T 2xph_A           58 NWLNDEIINFYMNMLMERSKEKGLPSVHAFNTFFFTKLKTAGYQAVKRWTKKVDVFSVDILLVPIHL-GVHWCLAVVDFR  136 (238)
T ss_dssp             CCCCHHHHHHHHHHHHHHTTSTTSCCEEECCTTTTHHHHTTCHHHHTTTTTTCCGGGSSEEEEEEEE-TTEEEEEEEETT
T ss_pred             CccCHHHHHHHHHHHHHhhhhcCCCceeeeecHHHHHhhhcccHHHHHHhccCCcccCCEEEEcccC-CCceEEEEEEcc
Confidence            79999999999999988764433222                                  2334444 689999999999


Q ss_pred             CceEEEEcCCCCCCcccc------------------------------cccccCCCCccccceeeehhhHHHhhCCCCcC
Q 035622           48 AKTGYFMDPQGNSPAEHI------------------------------KELVPKQPGSYECGYYVMLYMRDIIVDPSLLL   97 (117)
Q Consensus        48 ~~~i~y~DSm~~~~~~~l------------------------------k~~ip~Q~ng~dCGyyVm~~m~~Ii~d~~~~f   97 (117)
                      +++++|||||++.+.+.+                              ...+|+|.||+|||+|||+||+++..+.+..|
T Consensus       137 ~~~i~~~DSl~~~~~~~~~~l~~~L~~e~~~k~~~~~~~~~w~~~~~~~~~~PqQ~Ng~DCGvfvl~~~e~~~~~~~~~f  216 (238)
T 2xph_A          137 KKNITYYDSMGGINNEACRILLQYLKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDCGMFACKYADCITKDRPINF  216 (238)
T ss_dssp             TTEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHCSCCCCTTCEEEECCSSSSCCCSBGGGHHHHHHHHHHHHHTTCCCCC
T ss_pred             cceEEEeecccCCCHHHHHHHHHHHHHHHHHhcCCCcCcccceecccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCc
Confidence            999999999998753211                              13589999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHhh
Q 035622           98 NNAEMDEVRYERMNYVRV  115 (117)
Q Consensus        98 s~~~l~~vR~~wa~~~l~  115 (117)
                      ++++|+.+|++.+.-++.
T Consensus       217 ~q~dm~~~R~~m~~eil~  234 (238)
T 2xph_A          217 TQQHMPYFRKRMVWEILH  234 (238)
T ss_dssp             CGGGHHHHHHHHHHHHHH
T ss_pred             ChhhHHHHHHHHHHHHHh
Confidence            999999999999876653

>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A

Probab=99.91  E-value=1.1e-24  Score=166.43  Aligned_cols=114  Identities=27%  Similarity=0.441  Sum_probs=95.1

Q ss_pred             CccchhHHHHHHHHhhhhccC--------------C-----------------CCCCceeeccCCCceeEEEEEecCCce
Q 035622            2 EWLGLNHMHVYMVCLYDKIPA--------------D-----------------KMGKPFGFMNLVTAHWILVVIDVAAKT   50 (117)
Q Consensus         2 ~~ls~~~v~~yi~~l~~~~~~--------------~-----------------~~~~~y~Flnp~~~HW~L~vi~~~~~~   50 (117)
                      +||.-++|.+|+.+|.+...+              .                 ....+|.++|.++.||+|++||.++++
T Consensus        47 ~wLND~vI~fy~~~l~~~~~~~~~f~s~f~~~l~~~~~~~v~rw~~~~~~~~~~~~~i~iPin~~~~HW~l~vi~~~~~~  126 (221)
T 1euv_A           47 RWLNDTIIEFFMKYIEKSTPNTVAFNSFFYTNLSERGYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKT  126 (221)
T ss_dssp             CCCBHHHHHHHHHHHHHHSTTEEECCTHHHHHHHHHTGGGTTTTTGGGTSCGGGCSEEEEEEEETTTEEEEEEEETTTTE
T ss_pred             CCCCHHHHHHHHHHHHhcCCCeEEEEcHHHHHhhhhccHHHHHHHHhccCCcccCCEEEEEEEcCCCeEEEEEEEcCCCE
Confidence            799999999999988753211              0                 123366778887899999999999999


Q ss_pred             EEEEcCCCCCCcc-----------c---------------ccccccCCCCccccceeeehhhHHHhhCCCCcCChhhHHH
Q 035622           51 GYFMDPQGNSPAE-----------H---------------IKELVPKQPGSYECGYYVMLYMRDIIVDPSLLLNNAEMDE  104 (117)
Q Consensus        51 i~y~DSm~~~~~~-----------~---------------lk~~ip~Q~ng~dCGyyVm~~m~~Ii~d~~~~fs~~~l~~  104 (117)
                      ++|||||++.+..           .               ....+|+|.||+|||+|||+||+++.++.+..|+++++++
T Consensus       127 i~~~DSl~~~~~~~~~~i~~~l~~~l~~e~~~~~~~~~~~~~~~~PqQ~N~~DCGvfv~~~~~~~~~~~~l~f~~~d~~~  206 (221)
T 1euv_A          127 IGYVDSLSNGPNAMSFAILTDLQKYVMEESKHTIGEDFDLIHLDCPQQPNGYDCGIYVCMNTLYGSADAPLDFDYKDAIR  206 (221)
T ss_dssp             EEEECSSCCSCCHHHHHHHHHHHHHHHHHTTSSSCTTCEEEEECCCCCSSSSTHHHHHHHHHHHHHTTCCCCCCHHHHHH
T ss_pred             EEEEecCCCCCcchHHHHHHHHHHHHHHHHHHhcCCCceEeecCCCCCCCCcCHHHHHHHHHHHHhCCCCCCcCHHHHHH
Confidence            9999999865432           0               1135899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhh
Q 035622          105 VRYERMNYVRV  115 (117)
Q Consensus       105 vR~~wa~~~l~  115 (117)
                      +|++.+..+++
T Consensus       207 ~R~~i~~~Il~  217 (221)
T 1euv_A          207 MRRFIAHLILT  217 (221)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999998875

>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A

Probab=99.91  E-value=8.6e-25  Score=167.27  Aligned_cols=112  Identities=21%  Similarity=0.341  Sum_probs=91.7

Q ss_pred             CccchhHHHHHHHHhhhhccCCCCC----------------------------------CceeeccCCCceeEEEEEecC
Q 035622            2 EWLGLNHMHVYMVCLYDKIPADKMG----------------------------------KPFGFMNLVTAHWILVVIDVA   47 (117)
Q Consensus         2 ~~ls~~~v~~yi~~l~~~~~~~~~~----------------------------------~~y~Flnp~~~HW~L~vi~~~   47 (117)
                      +||.-++|.+|+.+|.++....+..                                  -+|.++|. +.||+|++||++
T Consensus        46 ~wLND~iI~fy~~~L~~~~~~~~~~~~~~f~s~f~~~l~~~~~~~v~~w~~~~~l~~~~~i~iPin~-~~HW~l~vi~~~  124 (226)
T 1th0_A           46 HWLNDEVINFYMNLLVERNKKQGYPALHVFSTFFYPKLKSGGYQAVKRWTKGVNLFEQEIILVPIHR-KVHWSLVVIDLR  124 (226)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHTCCCEEECCTTHHHHHHHHTGGGTGGGGTTCCGGGSSEEEEEEEE-TTEEEEEEEETT
T ss_pred             CccChHHHHHHHHHHHHhhhhccCCcEEEEeHHHHHHhhhcccHHHHHHhhcCCcccCCEEEEeEEe-CcEEEEEEEEcC
Confidence            7999999999999997654322111                                  14444554 789999999999


Q ss_pred             CceEEEEcCCCCCCcccc------------------------------cccccCCCCccccceeeehhhHHHhhCCCCcC
Q 035622           48 AKTGYFMDPQGNSPAEHI------------------------------KELVPKQPGSYECGYYVMLYMRDIIVDPSLLL   97 (117)
Q Consensus        48 ~~~i~y~DSm~~~~~~~l------------------------------k~~ip~Q~ng~dCGyyVm~~m~~Ii~d~~~~f   97 (117)
                      +++++|||||++.+....                              ...+|+|.||+|||+|||+||+++.++.+..|
T Consensus       125 ~~~i~~~DSl~~~~~~~~~~l~~~l~~e~~~k~~~~~~~~~w~~~~~~~~~~PqQ~Ng~DCGvfvl~~~~~~~~~~~~~f  204 (226)
T 1th0_A          125 KKCLKYLDSMGQKGHRICEILLQYLQDESKTKRNSDLNLLEWTHHSMKPHEIPQQLNGSDCGMFTCKYADYISRDKPITF  204 (226)
T ss_dssp             TTEEEEECTTCCCCHHHHHHHHHHHHHHHHHHTSCCCCGGGCEEEECCTTTSCCCCSSSCHHHHHHHHHHHHTTTCCCCC
T ss_pred             CCceEEEcCCCCCchHHHHHHHHHHHHHHHHhcCCCCCcccceeccccCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCcc
Confidence            999999999998763210                              13689999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHh
Q 035622           98 NNAEMDEVRYERMNYVR  114 (117)
Q Consensus        98 s~~~l~~vR~~wa~~~l  114 (117)
                      ++++|+.+|++.+.=++
T Consensus       205 ~q~dm~~~R~~~~~ei~  221 (226)
T 1th0_A          205 TQHQMPLFRKKMVWEIL  221 (226)
T ss_dssp             CGGGHHHHHHHHHHHHH
T ss_pred             ChhhHHHHHHHHHHHHH
Confidence            99999999999987554

>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A

Probab=99.91  E-value=3.1e-25  Score=167.88  Aligned_cols=115  Identities=23%  Similarity=0.329  Sum_probs=93.8

Q ss_pred             CccchhHHHHHHHHhhhhccCCC-----------------------------------CCCceeeccC------CCceeE
Q 035622            2 EWLGLNHMHVYMVCLYDKIPADK-----------------------------------MGKPFGFMNL------VTAHWI   40 (117)
Q Consensus         2 ~~ls~~~v~~yi~~l~~~~~~~~-----------------------------------~~~~y~Flnp------~~~HW~   40 (117)
                      +||.-++|.||+.+|.+.....+                                   ..-+|.++|.      ++.||+
T Consensus        25 ~wLND~iI~fy~~~L~~~~~~~~~~~~~~~~p~~s~f~~~~~~~~~v~~~~~~~~l~~~~~i~iPIn~n~~~~~~~~HW~  104 (212)
T 2bkr_A           25 SWLNDHIIGFAFEYFANSQFHDSSDHVSFISPEVTQFIKCTSNPAEIAMFLEPLDLPNKRVVFLAINDNSNQAAGGSHWS  104 (212)
T ss_dssp             SCCBHHHHHHHHHHHHHTTTGGGTTTEEEECHHHHHHHHHCCCHHHHHHHHGGGTGGGCSEEEEEEECCCSSSSBCCCEE
T ss_pred             CCcCHHHHHHHHHHHHHhhccCCCCcEEEEChHHHHHHHhCCCHHHHHHHhcccccccCCEEEEEEecCCCCCCCCCCeE
Confidence            79999999999999998774222                                   1123344553      479999


Q ss_pred             EEEEecCCceEEEEcCCCCCCccc---------------------ccccccCCCCccccceeeehhhHHHhhCC------
Q 035622           41 LVVIDVAAKTGYFMDPQGNSPAEH---------------------IKELVPKQPGSYECGYYVMLYMRDIIVDP------   93 (117)
Q Consensus        41 L~vi~~~~~~i~y~DSm~~~~~~~---------------------lk~~ip~Q~ng~dCGyyVm~~m~~Ii~d~------   93 (117)
                      |+|||.++++++|||||++.+...                     ....+|+|.||+|||+|||.||++++++.      
T Consensus       105 L~vi~~~~~~i~~~DSl~~~n~~~~~~l~~~l~~~l~~~~~~~~~~~~~~PqQ~N~~DCGvfvl~~~~~l~~~~~~~~~~  184 (212)
T 2bkr_A          105 LLVYLQDKNSFFHYDSHSRSNSVHAKQVAEKLEAFLGRKGDKLAFVEEKAPAQQNSYDCGMYVICNTEALCQNFFRQQTE  184 (212)
T ss_dssp             EEEEEGGGTEEEEECSSTTTTHHHHHHHHHHHHHHHSCTTCCCCEEECCCCCCSSSSTHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             EEEEEecCCeEEEEeCCCCCCHHHHHHHHHHHHHHhCCccccceEeECCCCCCCCCCcHHHHHHHHHHHHHHHhhhcCcc
Confidence            999999999999999999876432                     12458999999999999999999999853      


Q ss_pred             --CCcCChhhHHHHHHHHHHHHhhh
Q 035622           94 --SLLLNNAEMDEVRYERMNYVRVL  116 (117)
Q Consensus        94 --~~~fs~~~l~~vR~~wa~~~l~l  116 (117)
                        ...|++++++.+|+++.+.+++|
T Consensus       185 ~~~~~~~~~~i~~~R~~i~~lI~~L  209 (212)
T 2bkr_A          185 SLLQLLTPAYITKKRGEWKDLIATL  209 (212)
T ss_dssp             CHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred             cccccCCHHHHHHHHHHHHHHHHHH
Confidence              23588999999999999999886

>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A

Probab=99.90  E-value=1.2e-24  Score=163.25  Aligned_cols=115  Identities=18%  Similarity=0.245  Sum_probs=90.2

Q ss_pred             CccchhHHHHHHHHhhhhccCCCCCCceeeccC------------------------------------CCceeEEEEEe
Q 035622            2 EWLGLNHMHVYMVCLYDKIPADKMGKPFGFMNL------------------------------------VTAHWILVVID   45 (117)
Q Consensus         2 ~~ls~~~v~~yi~~l~~~~~~~~~~~~y~Flnp------------------------------------~~~HW~L~vi~   45 (117)
                      +||.-++|.||+.+|.+........+++.|++|                                    ++.||+|+|||
T Consensus         3 ~WLND~iI~fy~~~L~~~~~~~~~~~~v~f~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~iPin~~~~HWsLlvi~   82 (186)
T 2oix_A            3 SWLLDGHLRAYTDDLARRLRGEPNAHLLHFADSQVVTMLSSADPDQQARAQRLLAGDDIPPIVFLPINQPNAHWSLLVVD   82 (186)
T ss_dssp             CCCCHHHHHHHHHHHHHHTTTSTTGGGEEECCHHHHHHTTCSSHHHHHHHHHHHHSTTSCSEEEEEEEETTTEEEEEEEE
T ss_pred             CCcChHHHHHHHHHHHHHhhhccCcceEEEECHHHHHHHHhCCHHHHHHHHHHcccccccCEEEEEEeCCCCccEEEEEE
Confidence            799999999999999998754433333555543                                    47899999999


Q ss_pred             cCCceE---EEEcCCCCCCcc------------------cccccccCCCCccccceeeehhhHHHhh-------CCCCcC
Q 035622           46 VAAKTG---YFMDPQGNSPAE------------------HIKELVPKQPGSYECGYYVMLYMRDIIV-------DPSLLL   97 (117)
Q Consensus        46 ~~~~~i---~y~DSm~~~~~~------------------~lk~~ip~Q~ng~dCGyyVm~~m~~Ii~-------d~~~~f   97 (117)
                      .+++++   +|||||++....                  .....+|+|.||+|||+|||.||+++++       +....+
T Consensus        83 ~~~~~~~~~~~~DSl~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~PqQ~Ng~DCGvfv~~~~~~l~~~~~~~~~~~~~~~  162 (186)
T 2oix_A           83 RRNKDAVAAYHYDSMAQKDPQQRYLADMAAYHLGLDYQQTHEMPIAIQSDGYSAGDHVLTGIEVLAHRVLDGTFDYAGGR  162 (186)
T ss_dssp             CSSTTSCEEEEECCCSSCCHHHHHHHHHHHHHTTCCGGGCEEECBCCCC--CCHHHHHHHHHHHHHHHHHHTCTTSTTTT
T ss_pred             CCCCeeeeeEEEcCCCCCCHHHHHHHHHHHHHhCCCccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCccCCCcC
Confidence            999999   999999974321                  0123589999999999999999999987       223457


Q ss_pred             ChhhHHHHHHHHHHHHhhh
Q 035622           98 NNAEMDEVRYERMNYVRVL  116 (117)
Q Consensus        98 s~~~l~~vR~~wa~~~l~l  116 (117)
                      +.++++..|++++++++++
T Consensus       163 ~~~~i~~~R~~i~~lI~~~  181 (186)
T 2oix_A          163 DLTDIEPDRGLIRDRLAQA  181 (186)
T ss_dssp             CBTTCCCCHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHHHHHHHhc
Confidence            7899999999999998764

>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}

Probab=99.74  E-value=2e-18  Score=140.50  Aligned_cols=49  Identities=27%  Similarity=0.476  Sum_probs=44.2

Q ss_pred             cccCCCCccccceeeehhhHHHhhCCCCc----------CChhhHHHHHHHHHHHHhhh
Q 035622           68 LVPKQPGSYECGYYVMLYMRDIIVDPSLL----------LNNAEMDEVRYERMNYVRVL  116 (117)
Q Consensus        68 ~ip~Q~ng~dCGyyVm~~m~~Ii~d~~~~----------fs~~~l~~vR~~wa~~~l~l  116 (117)
                      .+|+|.||+|||+|||+||+++..+++..          |+++++...|+++..++++|
T Consensus       255 ~~P~Q~N~~DCGvfvl~~~e~~~~~~~~~f~~~~~~~~wf~~~~i~~kR~ei~~LI~~L  313 (323)
T 3eay_A          255 KVPKQDNSSDCGVYLLQYVESFFKDPIVNFELPIHLEKWFPRHVIKTKREDIRELILKL  313 (323)
T ss_dssp             BCCCCCSTTCHHHHHHHHHHHHHHSCCCCCCSSCBCTTSSCHHHHHTHHHHHHHHHHHH
T ss_pred             CCCCcCCCCcHHHHHHHHHHHHHhCCccccccccccccCCCHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999988553          56799999999999999886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	117
d1euva_	221	d.3.1.7 (A:) Ulp1 protease C-terminal domain {Bake	5e-08
d1th0a_	226	d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {H	2e-05
d2iy1a1	225	d.3.1.7 (A:419-643) Sentrin-specific protease 1 {H	4e-05

>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 221

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Ulp1 protease C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.1 bits (111), Expect = 5e-08
 Identities = 28/116 (24%), Positives = 43/116 (37%), Gaps = 26/116 (22%)

Query: 19  KIPADKMGKPFGFMNLVTAHWILVVIDVAAKTGYFMDPQGNSPAEHIKELV--------- 69
           K   DK+ K F  +NL  +HW L +ID+  KT  ++D   N P      ++         
Sbjct: 95  KTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVME 154

Query: 70  -----------------PKQPGSYECGYYVMLYMRDIIVDPSLLLNNAEMDEVRYE 108
                            P+QP  Y+CG YV +       D  L  +  +   +R  
Sbjct: 155 ESKHTIGEDFDLIHLDCPQQPNGYDCGIYVCMNTLYGSADAPLDFDYKDAIRMRRF 210

>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 226

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 2, SENP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 2e-05
 Identities = 20/100 (20%), Positives = 30/100 (30%), Gaps = 30/100 (30%)

Query: 37  AHWILVVIDVAAKTGYFMDPQGNSPAEHIKEL---------------------------- 68
            HW LVVID+  K   ++D  G       + L                            
Sbjct: 114 VHWSLVVIDLRKKCLKYLDSMGQKGHRICEILLQYLQDESKTKRNSDLNLLEWTHHSMKP 173

Query: 69  --VPKQPGSYECGYYVMLYMRDIIVDPSLLLNNAEMDEVR 106
             +P+Q    +CG +   Y   I  D  +     +M   R
Sbjct: 174 HEIPQQLNGSDCGMFTCKYADYISRDKPITFTQHQMPLFR 213

>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 225

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 4e-05
 Identities = 11/60 (18%), Positives = 17/60 (28%)

Query: 49  KTGYFMDPQGNSPAEHIKELVPKQPGSYECGYYVMLYMRDIIVDPSLLLNNAEMDEVRYE 108
           K     D  G        + +P+Q    + G +   Y   I  D  +      M   R  
Sbjct: 156 KKRKEFDTNGWQLFSKKSQEIPQQMNGSDAGMFACKYADCITKDRPINFTQQHMPYFRKR 215

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	117
d2iy1a1	225	Sentrin-specific protease 1 {Human (Homo sapiens)	99.91
d1th0a_	226	Sentrin-specific protease 2, SENP2 {Human (Homo sa	99.91
d1euva_	221	Ulp1 protease C-terminal domain {Baker's yeast (Sa	99.91
d2bkra1	212	Sentrin-specific protease 8, SENP8 {Human (Homo sa	99.89
d1nlna_	203	Human adenovirus 2 proteinase, adenain {Mastadenov	97.01

>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=6.8e-25  Score=163.05  Aligned_cols=113  Identities=20%  Similarity=0.337  Sum_probs=95.1

Q ss_pred             CccchhHHHHHHHHhhhhccCCCCCCceeeccCC----------------------------------CceeEEEEEecC
Q 035622            2 EWLGLNHMHVYMVCLYDKIPADKMGKPFGFMNLV----------------------------------TAHWILVVIDVA   47 (117)
Q Consensus         2 ~~ls~~~v~~yi~~l~~~~~~~~~~~~y~Flnp~----------------------------------~~HW~L~vi~~~   47 (117)
                      +||+.++|.+|+.++.++..+.+.. .+.|++|.                                  +.||+|++||++
T Consensus        46 ~wLnd~iI~~y~~~l~~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~iPin~~~HW~l~vi~~~  124 (225)
T d2iy1a1          46 NWLNDEIINFYMNMLMERSKEKGLP-SVHAFNTFFFTKLKTAGYQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFR  124 (225)
T ss_dssp             CCCBHHHHHHHHHHHHHHTTSTTSC-CEEECCTTHHHHHHHSCGGGTGGGGTTCCGGGSSEEEEEEECSSCEEEEEEETT
T ss_pred             cchhhHHHHHHHHHHHHHhhhhccC-ceEEeccHHHhhhcccCHHHHHHHHhccccccCCEEEEEEeCCCCEEEEEEEec
Confidence            7999999999999999988666543 33444443                                  689999999999


Q ss_pred             CceEEEEcCCCCCCccccc------------------------------ccccCCCCccccceeeehhhHHHhhCCCCcC
Q 035622           48 AKTGYFMDPQGNSPAEHIK------------------------------ELVPKQPGSYECGYYVMLYMRDIIVDPSLLL   97 (117)
Q Consensus        48 ~~~i~y~DSm~~~~~~~lk------------------------------~~ip~Q~ng~dCGyyVm~~m~~Ii~d~~~~f   97 (117)
                      ++.+.+|||+++......+                              ..||+|.||+|||+|||+||+++..+++..|
T Consensus       125 ~~~i~~~DSl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pqQ~Ng~DCGvfvl~~~~~~~~~~~~~~  204 (225)
T d2iy1a1         125 KKNITYYDSMGGINNEACRILLQYLKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDAGMFACKYADCITKDRPINF  204 (225)
T ss_dssp             TTEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSSCCCCTTCEEEECCTTTSCCCCSSSTHHHHHHHHHHHHHTTCCCCC
T ss_pred             cceEEEEecCCCCchHHHHHHHHHHHHHHHHhccCccCcccceecccccccCCCCCCCCChHHHHHHHHHHHhCCCCCCc
Confidence            9999999999887653111                              2479999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHhh
Q 035622           98 NNAEMDEVRYERMNYVRV  115 (117)
Q Consensus        98 s~~~l~~vR~~wa~~~l~  115 (117)
                      ++++++++|++.|.-+++
T Consensus       205 ~q~~~~~~R~~~~~~l~~  222 (225)
T d2iy1a1         205 TQQHMPYFRKRMVWEILH  222 (225)
T ss_dssp             CGGGHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHh
Confidence            999999999999876653

>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 2, SENP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1e-24  Score=162.22  Aligned_cols=112  Identities=21%  Similarity=0.378  Sum_probs=92.4

Q ss_pred             CccchhHHHHHHHHhhhhccCCCCCCceeeccCC----------------------------------CceeEEEEEecC
Q 035622            2 EWLGLNHMHVYMVCLYDKIPADKMGKPFGFMNLV----------------------------------TAHWILVVIDVA   47 (117)
Q Consensus         2 ~~ls~~~v~~yi~~l~~~~~~~~~~~~y~Flnp~----------------------------------~~HW~L~vi~~~   47 (117)
                      +||+.++|.+|+.++.++..+.+.. ...|.+|.                                  +.||+|++||++
T Consensus        46 ~WLnD~iI~~y~~~l~~~~~~~~~~-~~~~~~~~f~~~l~~~~~~~~~~~~~~~~l~~~~~i~iPin~~~HW~L~vi~~~  124 (226)
T d1th0a_          46 HWLNDEVINFYMNLLVERNKKQGYP-ALHVFSTFFYPKLKSGGYQAVKRWTKGVNLFEQEIILVPIHRKVHWSLVVIDLR  124 (226)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHTCC-CEEECCTTHHHHHHHHTGGGTGGGGTTCCGGGSSEEEEEEEETTEEEEEEEETT
T ss_pred             cccccHHHHHHHHHHHHhhhhccCC-ceEEecHHHHHHHhhccHHHHHHHHhccCcccCCEEEEeEEcCCceEEEEEEec
Confidence            7999999999999998876554433 23333333                                  679999999999


Q ss_pred             CceEEEEcCCCCCCccccc------------------------------ccccCCCCccccceeeehhhHHHhhCCCCcC
Q 035622           48 AKTGYFMDPQGNSPAEHIK------------------------------ELVPKQPGSYECGYYVMLYMRDIIVDPSLLL   97 (117)
Q Consensus        48 ~~~i~y~DSm~~~~~~~lk------------------------------~~ip~Q~ng~dCGyyVm~~m~~Ii~d~~~~f   97 (117)
                      +++++|+||+++.+....+                              ..+|+|.||+|||+|||+||++++.+.+..|
T Consensus       125 ~~~i~~~DSl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pqQ~N~~DCGvfvl~~~~~~~~~~~~~~  204 (226)
T d1th0a_         125 KKCLKYLDSMGQKGHRICEILLQYLQDESKTKRNSDLNLLEWTHHSMKPHEIPQQLNGSDCGMFTCKYADYISRDKPITF  204 (226)
T ss_dssp             TTEEEEECTTCCCCHHHHHHHHHHHHHHHHHHTSCCCCGGGCEEEECCTTTSCCCCSSSCHHHHHHHHHHHHTTTCCCCC
T ss_pred             cceEEEeccccCCChHHHHHHHHHHHHHHHHhhCCCcCcccceeeeeccCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCc
Confidence            9999999999987643111                              3468999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHh
Q 035622           98 NNAEMDEVRYERMNYVR  114 (117)
Q Consensus        98 s~~~l~~vR~~wa~~~l  114 (117)
                      ++++++.+|++.+.-++
T Consensus       205 tq~di~~~R~~i~~el~  221 (226)
T d1th0a_         205 TQHQMPLFRKKMVWEIL  221 (226)
T ss_dssp             CGGGHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            99999999999986443

>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Ulp1 protease C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1.5e-24  Score=163.17  Aligned_cols=114  Identities=26%  Similarity=0.426  Sum_probs=94.4

Q ss_pred             CccchhHHHHHHHHhhhhccC--------------C-----------------CCCCceeeccCCCceeEEEEEecCCce
Q 035622            2 EWLGLNHMHVYMVCLYDKIPA--------------D-----------------KMGKPFGFMNLVTAHWILVVIDVAAKT   50 (117)
Q Consensus         2 ~~ls~~~v~~yi~~l~~~~~~--------------~-----------------~~~~~y~Flnp~~~HW~L~vi~~~~~~   50 (117)
                      +||+.++|.+|+.++.++..+              .                 ....+|.++|.++.||+|+++|+++++
T Consensus        47 ~WLnD~iIn~y~~~l~~~~~~~~~~~s~f~~~l~~~~~~~~~~w~~~~~~~~~~~~~i~iPin~~~~HW~l~vi~~~~~~  126 (221)
T d1euva_          47 RWLNDTIIEFFMKYIEKSTPNTVAFNSFFYTNLSERGYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKT  126 (221)
T ss_dssp             CCCBHHHHHHHHHHHHHHSTTEEECCTHHHHHHHHHTGGGTTTTTGGGTSCGGGCSEEEEEEEETTTEEEEEEEETTTTE
T ss_pred             cccCcHHHHHHHHHHHhcCCCeEEeccHHHHhHhhhchHHHHHHHHhcccchhhcceeEeeEecccceEEEEEeeccccc
Confidence            699999999999887544321              0                 111246678998999999999999999


Q ss_pred             EEEEcCCCCCCcccc--------------------------cccccCCCCccccceeeehhhHHHhhCCCCcCChhhHHH
Q 035622           51 GYFMDPQGNSPAEHI--------------------------KELVPKQPGSYECGYYVMLYMRDIIVDPSLLLNNAEMDE  104 (117)
Q Consensus        51 i~y~DSm~~~~~~~l--------------------------k~~ip~Q~ng~dCGyyVm~~m~~Ii~d~~~~fs~~~l~~  104 (117)
                      ++|||||++.+....                          +..||+|.||+|||+|||+||+++..+.+..|++.++++
T Consensus       127 i~~~DSl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~PqQ~N~~DCGvfvl~~~~~~~~~~~~~~~q~d~~~  206 (221)
T d1euva_         127 IGYVDSLSNGPNAMSFAILTDLQKYVMEESKHTIGEDFDLIHLDCPQQPNGYDCGIYVCMNTLYGSADAPLDFDYKDAIR  206 (221)
T ss_dssp             EEEECSSCCSCCHHHHHHHHHHHHHHHHHTTSSSCTTCEEEEECCCCCSSSSTHHHHHHHHHHHHHTTCCCCCCHHHHHH
T ss_pred             eeeeccccCCCcHHHHHHHHHHHHHHHHHHHhhcCCCCeeeeccCCCCCCCCChHHHHHHHHHHHhCCCCCccCHHHHHH
Confidence            999999988775421                          134799999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhh
Q 035622          105 VRYERMNYVRV  115 (117)
Q Consensus       105 vR~~wa~~~l~  115 (117)
                      +|+..+.-++.
T Consensus       207 ~R~~i~~~il~  217 (221)
T d1euva_         207 MRRFIAHLILT  217 (221)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
Confidence            99998877653

>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 8, SENP8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.8e-24  Score=159.03  Aligned_cols=114  Identities=23%  Similarity=0.365  Sum_probs=90.8

Q ss_pred             CccchhHHHHHHHHhhhhccCCCCCCceeeccCC------------------------------------------Ccee
Q 035622            2 EWLGLNHMHVYMVCLYDKIPADKMGKPFGFMNLV------------------------------------------TAHW   39 (117)
Q Consensus         2 ~~ls~~~v~~yi~~l~~~~~~~~~~~~y~Flnp~------------------------------------------~~HW   39 (117)
                      +||+.++|.+|+.++.+.... ...+.+.|++|.                                          +.||
T Consensus        25 ~WLND~iId~y~~~l~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ifiPIn~~~~~~~~g~HW  103 (212)
T d2bkra1          25 SWLNDHIIGFAFEYFANSQFH-DSSDHVSFISPEVTQFIKCTSNPAEIAMFLEPLDLPNKRVVFLAINDNSNQAAGGSHW  103 (212)
T ss_dssp             SCCBHHHHHHHHHHHHHTTTG-GGTTTEEEECHHHHHHHHHCCCHHHHHHHHGGGTGGGCSEEEEEEECCCSSSSBCCCE
T ss_pred             CCcCHHHHHHHHHHHHHhhhc-cccCcEEEEChHHHHHHhccccHHHHHHHHhccChhhccEEEEecccccccccCccee
Confidence            799999999999999765432 223345555443                                          5799


Q ss_pred             EEEEEecCCceEEEEcCCCCCCccccc---------------------ccccCCCCccccceeeehhhHHHhh----CCC
Q 035622           40 ILVVIDVAAKTGYFMDPQGNSPAEHIK---------------------ELVPKQPGSYECGYYVMLYMRDIIV----DPS   94 (117)
Q Consensus        40 ~L~vi~~~~~~i~y~DSm~~~~~~~lk---------------------~~ip~Q~ng~dCGyyVm~~m~~Ii~----d~~   94 (117)
                      +|+++|++++.++|+||+++.+....+                     ..+|+|.||+|||+|||+||++++.    +..
T Consensus       104 ~l~vi~~~~~~i~~~DSl~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~Q~N~~DCGvfv~~~~~~l~~~~~~~~~  183 (212)
T d2bkra1         104 SLLVYLQDKNSFFHYDSHSRSNSVHAKQVAEKLEAFLGRKGDKLAFVEEKAPAQQNSYDCGMYVICNTEALCQNFFRQQT  183 (212)
T ss_dssp             EEEEEEGGGTEEEEECSSTTTTHHHHHHHHHHHHHHHSCTTCCCCEEECCCCCCSSSSTHHHHHHHHHHHHHHHHHSCCC
T ss_pred             eeeeeccccceEEEecCCCcCCHHHHHHHHHHHHHHhccccCceeeeecccCCCCCCCChHHHHHHHHHHHHHhcccccc
Confidence            999999999999999999987754222                     3479999999999999999999976    222


Q ss_pred             ----CcCChhhHHHHHHHHHHHHhhh
Q 035622           95 ----LLLNNAEMDEVRYERMNYVRVL  116 (117)
Q Consensus        95 ----~~fs~~~l~~vR~~wa~~~l~l  116 (117)
                          ..+++++++.+|+++..++++|
T Consensus       184 ~~~~~~~~~~~i~~~R~~l~~lI~~L  209 (212)
T d2bkra1         184 ESLLQLLTPAYITKKRGEWKDLIATL  209 (212)
T ss_dssp             CCHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhcCCHHHHHHHHHHHHHHHHHH
Confidence                2367999999999999999876

>d1nlna_ d.3.1.7 (A:) Human adenovirus 2 proteinase, adenain {Mastadenovirus H2 [TaxId: 10515]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Human adenovirus 2 proteinase, adenain
species: Mastadenovirus H2 [TaxId: 10515]

Probab=97.01  E-value=0.00035  Score=51.71  Aligned_cols=56  Identities=23%  Similarity=0.489  Sum_probs=43.9

Q ss_pred             CceeEEEEEecCCceEEEEcCCCCCCcc------------------------ccccc----ccCCCCccccceeeehhhH
Q 035622           36 TAHWILVVIDVAAKTGYFMDPQGNSPAE------------------------HIKEL----VPKQPGSYECGYYVMLYMR   87 (117)
Q Consensus        36 ~~HW~L~vi~~~~~~i~y~DSm~~~~~~------------------------~lk~~----ip~Q~ng~dCGyyVm~~m~   87 (117)
                      +.||.-++-||+.++.|.|||+|-...+                        +++-+    -=|=++|--||.|.|.|.-
T Consensus        51 G~HWlA~Aw~P~s~t~Y~FDPfGfsd~~L~q~Y~FeY~~llkRSAL~~spdRCvtlvkstq~VQcp~SaaCGLFC~lFL~  130 (203)
T d1nlna_          51 GVHWMAFAWNPRSKTCYLFEPFGFSDQRLKQVYQFEYESLLRRSAIASSPDRCITLEKSTQSVQGPNSAACGLFCCMFLH  130 (203)
T ss_dssp             CCCEEEEEEETTTTEEEEECTTCCCHHHHHHHHCCCCHHHHHHHHHHHCTTSEEEEEEECEECSCTTCCCHHHHHHHHHH
T ss_pred             ceeeEEeEecCCcCeEEEECCCCCCHHHHHHHhhhhHHHHHHHHhhcCCCCceEEEEeccceecCCCchhHHHHHHHHHH
Confidence            8999999999999999999999855322                        22111    1145788999999999998


Q ss_pred             HHhh
Q 035622           88 DIIV   91 (117)
Q Consensus        88 ~Ii~   91 (117)
                      .+..
T Consensus       131 aF~~  134 (203)
T d1nlna_         131 AFAN  134 (203)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8888