Citrus Sinensis ID: 035643

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccEcccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccc
Coil and Loop (DISEMBL)
eilrrkpeqageldsrkaspLHLAAAKGYLDIVLKLVSVnpemcfardidgknplHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNdhefvnskddngstILHLAVLEKQVEVFYMDfdrnnmdnnifygcglsgy
Flexible Loop (DISEMBL)
eilrrkpeqageldsrkaspLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEfvnskddngstILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY
Low Complexity Region (SEG)
EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY
Disordered region (IsUnstruct)
********************LHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGL***
Disordered Region (DISOPRED)
EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY
Disordered Region (DISEMBL)
****************KASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY
Disordered Region (DISPRO)
*****KPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNN****C*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	159	2.2.26 [Sep-21-2011]
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.723	0.216	0.341	3e-13
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.836	0.253	0.303	3e-11
Q6GNY1	1011	E3 ubiquitin-protein liga	N/A	no	0.830	0.130	0.311	2e-09
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.754	0.203	0.327	3e-09
Q80SY4	1006	E3 ubiquitin-protein liga	yes	no	0.918	0.145	0.282	2e-08
A5PMU4	1280	Ankyrin repeat and steril	yes	no	0.773	0.096	0.317	2e-08
Q86YT6	1006	E3 ubiquitin-protein liga	yes	no	0.918	0.145	0.282	3e-08
P16157	1881	Ankyrin-1 OS=Homo sapiens	no	no	0.691	0.058	0.355	3e-08
Q4JHE0	420	Probable E3 ubiquitin-pro	no	no	0.773	0.292	0.341	3e-08
Q804S5	1030	E3 ubiquitin-protein liga	no	no	0.830	0.128	0.297	5e-08

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score = 74.3 bits (181), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 66/117 (56%), Gaps = 2/117 (1%)

Query: 20  PLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAAL 79
             H+AA +G+L IV +L+ + PE+C   D    +PL+ AA++ ++ ++  ++ V P  A+
Sbjct: 97  AFHVAAKRGHLGIVKELLRLWPELCRICDASNTSPLYAAAVQDHLEIVNAMLDVDPSCAM 156

Query: 80  ILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
           I+ + G T LH    Y  L  ++ L+E   D   V  KD  G T LH+AV  + +EV
Sbjct: 157 IVRKNGKTSLHTAGRYGLLRIVKALIE--KDAAIVGVKDKKGQTALHMAVKGRSLEV 211

Arabidopsis thaliana (taxid: 3702)

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score = 67.8 bits (164), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 2/135 (1%)

Query: 2   ILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIR 61
           ++   PE +   DS K + LH AA++G+ +IV  L+    ++      +GK  LH AA  
Sbjct: 110 LIEANPELSFTFDSSKTTALHTAASQGHGEIVCFLLDKGVDLAAIARSNGKTALHSAARN 169

Query: 62  GNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNG 121
           G+  ++K+L++ +      + ++G T LH  V     E + +L+E   D   +NS D+ G
Sbjct: 170 GHTVIVKKLIEKKAGMVTRVDKKGQTALHMAVKGQNTEIVDVLMEA--DGSLINSADNKG 227

Query: 122 STILHLAVLEKQVEV 136
           +T LH+AV + + E+
Sbjct: 228 NTPLHIAVRKNRAEI 242

Arabidopsis thaliana (taxid: 3702)

>sp|Q6GNY1|MIB1_XENLA E3 ubiquitin-protein ligase mib1 OS=Xenopus laevis GN=mib1 PE=2 SV=1

 Score = 61.6 bits (148), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 6/138 (4%)

Query: 1   EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLV--SVNPEMCFARDIDGKNPLHIA 58
           E+L+R        + R+ +PLH+A  KG+L +V KL+  S +P +   +D +G  PLH A
Sbjct: 514 EVLQRGGADLNARNKRRQTPLHIAVNKGHLQVVKKLLDFSCHPSL---QDSEGDTPLHDA 570

Query: 59  AIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKD 118
             +   ++L  L++       I    G   LH         ++R+L+        V+ K 
Sbjct: 571 ISKKRDDILAVLLEAGADVT-ITNNNGFNALHHAALRGNPSAMRVLLSKLPRPWIVDEKK 629

Query: 119 DNGSTILHLAVLEKQVEV 136
           D+G T LHLA L   VEV
Sbjct: 630 DDGYTALHLAALNNHVEV 647

E3 ubiquitin-protein ligase that mediates ubiquitination of Delta receptors, which act as ligands of Notch proteins. Positively regulates the Delta-mediated Notch signaling by ubiquitinating the intracellular domain of Delta, leading to endocytosis of Delta receptors.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 68/122 (55%), Gaps = 2/122 (1%)

Query: 18  ASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQA 77
           A+PL  AA +G+ ++V +L+S    +      + KN LH+AA +G+V V+K L+   PQ 
Sbjct: 199 ATPLVSAAMRGHTEVVNQLLSKAGNLLEISRSNNKNALHLAARQGHVEVIKALLSKDPQL 258

Query: 78  ALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVF 137
           A  + ++G T LH  V     E ++LL++   D   V   D + +T LH+A  +K+ E+ 
Sbjct: 259 ARRIDKKGQTALHMAVKGQSSEVVKLLLDA--DPAIVMQPDKSCNTALHVATRKKRAEIV 316

Query: 138 YM 139
            +
Sbjct: 317 EL 318

Arabidopsis thaliana (taxid: 3702)

>sp|Q80SY4|MIB1_MOUSE E3 ubiquitin-protein ligase MIB1 OS=Mus musculus GN=Mib1 PE=1 SV=1

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/152 (28%), Positives = 70/152 (46%), Gaps = 6/152 (3%)

Query: 1   EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVS--VNPEMCFARDIDGKNPLHIA 58
           E+L R        + R+ +PLH+A  KG+L +V  L+    +P +   +D +G  PLH A
Sbjct: 514 EVLHRGSADLNARNKRRQTPLHIAVNKGHLQVVKTLLDFGCHPSL---QDSEGDTPLHDA 570

Query: 59  AIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKD 118
             +   ++L  L++       I    G   LH         ++R+L+        V+ K 
Sbjct: 571 ISKKRDDILAVLLEAGADVT-ITNNNGFNALHHAALRGNPSAMRVLLSKLPRPWIVDEKK 629

Query: 119 DNGSTILHLAVLEKQVEVFYMDFDRNNMDNNI 150
           D+G T LHLA L   VEV  +   + N + +I
Sbjct: 630 DDGYTALHLAALNNHVEVAELLVHQGNANLDI 661

E3 ubiquitin-protein ligase that mediates ubiquitination of Delta receptors, which act as ligands of Notch proteins. Positively regulates the Delta-mediated Notch signaling by ubiquitinating the intracellular domain of Delta, leading to endocytosis of Delta receptors. Mediates 'Lys-63'-linked polyubiquitination of TBK1, which probably participates in kinase activation (By similarity). Probably mediates ubiquitination and subsequent proteasomal degradation of DAPK1, thereby antagonizing anti-apoptotic effects of DAPK1 to promote TNF-induced apoptosis.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|A5PMU4|ANS1B_DANRE Ankyrin repeat and sterile alpha motif domain-containing protein 1B OS=Danio rerio GN=anks1b PE=3 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 6/129 (4%)

Query: 13  LDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK 72
           +D    +PLH A+  G+ D+VLKL+        + D  G  PLH+AA RG+V++++ L+ 
Sbjct: 54  VDGSGYTPLHHASLNGHRDVVLKLLQFEASTNVS-DSKGCFPLHLAAWRGDVDIVQILIH 112

Query: 73  VRPQAALILME--RGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVL 130
             P  + +  +     T LH    Y   E +R+L++   D    NS+   G T L LA L
Sbjct: 113 HGPSHSRVNEQNLEKETALHCAAQYGHSEVVRVLLQELTDPSMRNSR---GETPLDLAAL 169

Query: 131 EKQVEVFYM 139
             +++V  M
Sbjct: 170 YGRLQVVRM 178

Danio rerio (taxid: 7955)

>sp|Q86YT6|MIB1_HUMAN E3 ubiquitin-protein ligase MIB1 OS=Homo sapiens GN=MIB1 PE=1 SV=1

 Score = 57.8 bits (138), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/152 (28%), Positives = 70/152 (46%), Gaps = 6/152 (3%)

Query: 1   EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVS--VNPEMCFARDIDGKNPLHIA 58
           E+L R        + R+ +PLH+A  KG+L +V  L+    +P +   +D +G  PLH A
Sbjct: 514 EVLHRGSADLNARNKRRQTPLHIAVNKGHLQVVKTLLDFGCHPSL---QDSEGDTPLHDA 570

Query: 59  AIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKD 118
             +   ++L  L++       I    G   LH         ++R+L+        V+ K 
Sbjct: 571 ISKKRDDILAVLLEAGADVT-ITNNNGFNALHHAALRGNPSAMRVLLSKLPRPWIVDEKK 629

Query: 119 DNGSTILHLAVLEKQVEVFYMDFDRNNMDNNI 150
           D+G T LHLA L   VEV  +   + N + +I
Sbjct: 630 DDGYTALHLAALNNHVEVAELLVHQGNANLDI 661

E3 ubiquitin-protein ligase that mediates ubiquitination of Delta receptors, which act as ligands of Notch proteins. Positively regulates the Delta-mediated Notch signaling by ubiquitinating the intracellular domain of Delta, leading to endocytosis of Delta receptors. Probably mediates ubiquitination and subsequent proteasomal degradation of DAPK1, thereby antagonizing anti-apoptotic effects of DAPK1 to promote TNF-induced apoptosis (By similarity). Mediates 'Lys-63'-linked polyubiquitination of TBK1, which probably participates in kinase activation.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 11/121 (9%)

Query: 19  SPLHLAAAKGYLDIVLKLVSVN-PEMCFARDIDGKNPLHIAAIRGNVNVLKELVK--VRP 75
           +PLH+AA +G+++ VL L+     + C  +   G  PLH+AA  G V V + L++    P
Sbjct: 505 TPLHIAAREGHVETVLALLEKEASQACMTKK--GFTPLHVAAKYGKVRVAELLLERDAHP 562

Query: 76  QAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVE 135
            AA    + G+T LH  V++N L+ ++LL+         +S   NG T LH+A  + QVE
Sbjct: 563 NAA---GKNGLTPLHVAVHHNNLDIVKLLLPRGGS---PHSPAWNGYTPLHIAAKQNQVE 616

Query: 136 V 136
           V
Sbjct: 617 V 617

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

>sp|Q4JHE0|XB36_ORYSJ Probable E3 ubiquitin-protein ligase XBOS36 OS=Oryza sativa subsp. japonica GN=XBOS36 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 65/126 (51%), Gaps = 3/126 (2%)

Query: 19  SPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAA 78
           SPLH+AAAKG+ +I   L+    ++  AR+I G+ PL  A   G+  V++ L+  R    
Sbjct: 47  SPLHVAAAKGHHEIAALLLENGADV-NARNIYGQTPLMQACRFGHWEVVQTLLVFRCNVW 105

Query: 79  LILMERGVTILHACVNYNQLESLRLLV-EIRNDHE-FVNSKDDNGSTILHLAVLEKQVEV 136
            +    G T LH       ++ +RLLV +   D + +VN   + G T LHLA L   VE 
Sbjct: 106 RVENLSGRTALHMAAAGGHVKCVRLLVADAAGDRDGYVNKAANGGVTALHLAALHGHVEC 165

Query: 137 FYMDFD 142
            ++  D
Sbjct: 166 VHLLID 171

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q804S5|MIB1_DANRE E3 ubiquitin-protein ligase mib1 OS=Danio rerio GN=mib1 PE=1 SV=1

 Score = 57.0 bits (136), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 6/138 (4%)

Query: 1   EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVS--VNPEMCFARDIDGKNPLHIA 58
           E+L R        + R+ +PLH+A  KG+L +V  L+    +P +   +D +G  PLH A
Sbjct: 514 EVLHRGGADLNARNKRRQTPLHIAVNKGHLQVVKTLLDFGCHPSL---QDSEGDTPLHDA 570

Query: 59  AIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKD 118
             +   ++L  L++       I    G   LH         ++R+L+        V+ K 
Sbjct: 571 ISKKRDDMLSVLLEAGADVT-ITNNNGFNALHHAALRGNPSAMRVLLSKLPRPWIVDEKK 629

Query: 119 DNGSTILHLAVLEKQVEV 136
           D+G T LHLA L   VEV
Sbjct: 630 DDGYTALHLAALNNHVEV 647

E3 ubiquitin-protein ligase that mediates ubiquitination of Delta receptors, which act as ligands of Notch proteins. Positively regulates the Delta-mediated Notch signaling by ubiquitinating the intracellular domain of Delta, leading to endocytosis of Delta receptors. It thereby participates in many processes regulated by the Notch signaling pathway, such as midline cell fate specification prior to germ layer formation, patterning of sensory cell differentiation in the ear, neurogenesis of the hindbrain and commitment to a secretory fate in the intestine. Essential for early embryonic development.

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
343887296	232	hypothetical protein [Citrus unshiu]	1.0	0.685	1.0	1e-88
343887301	470	Ankyrin repeat family protein [Citrus un	0.773	0.261	0.773	2e-54
343887300	469	ankyrin repeat family protein [Citrus un	0.849	0.287	0.770	1e-53
343887311	473	ankyrin repeat family protein [Citrus un	0.993	0.334	0.632	1e-51
296081692	444	unnamed protein product [Vitis vinifera]	0.987	0.353	0.559	3e-43
359475962	486	PREDICTED: ankyrin repeat-containing pro	0.987	0.323	0.559	4e-43
343887299	477	ankyrin repeat family protein [Citrus un	0.830	0.276	0.588	6e-41
224092119	471	predicted protein [Populus trichocarpa]	0.974	0.329	0.522	6e-40
255560685	525	ankyrin repeat-containing protein, putat	0.849	0.257	0.533	1e-35
449453053	476	PREDICTED: ankyrin repeat-containing pro	0.855	0.285	0.535	3e-34

>gi|343887296|dbj|BAK61842.1| hypothetical protein [Citrus unshiu]

 Score =  330 bits (846), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 159/159 (100%), Positives = 159/159 (100%)

Query: 1   EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
           EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI
Sbjct: 69  EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 128

Query: 61  RGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDN 120
           RGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDN
Sbjct: 129 RGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDN 188

Query: 121 GSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY 159
           GSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY
Sbjct: 189 GSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY 227

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343887301|dbj|BAK61847.1| Ankyrin repeat family protein [Citrus unshiu]

 Score =  216 bits (551), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 106/137 (77%), Positives = 122/137 (89%)

Query: 1   EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
           EIL RKPE AGELDSR++S LHLAAAKG+L IVLKLVSVNP+MC A D DGKNPLH+AAI
Sbjct: 55  EILSRKPELAGELDSRRSSALHLAAAKGHLGIVLKLVSVNPKMCCACDRDGKNPLHVAAI 114

Query: 61  RGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDN 120
           +G+VNVL+ELV+VRP+A  ILM+RG TILHACVNYNQLE L+LLVE  NDHEFVNSKDD+
Sbjct: 115 KGHVNVLRELVQVRPKACRILMDRGETILHACVNYNQLECLKLLVETLNDHEFVNSKDDD 174

Query: 121 GSTILHLAVLEKQVEVF 137
           G+TILHLAV++KQVE  
Sbjct: 175 GNTILHLAVIDKQVETI 191

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343887300|dbj|BAK61846.1| ankyrin repeat family protein [Citrus unshiu]

 Score =  214 bits (545), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 104/135 (77%), Positives = 121/135 (89%)

Query: 1   EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
           EIL RKPE AGELDSR++S LH AAAKG+L IVLKL+SVNP+MC A D DGKNPLH+AAI
Sbjct: 55  EILSRKPELAGELDSRRSSALHFAAAKGHLGIVLKLLSVNPKMCCACDRDGKNPLHVAAI 114

Query: 61  RGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDN 120
           +G+VNVL+ELV+VRP+A  ILM+RG TILHACVNYNQLE L+LLVE  NDHEFVNSKDD+
Sbjct: 115 KGHVNVLRELVQVRPKACRILMDRGETILHACVNYNQLECLKLLVETLNDHEFVNSKDDD 174

Query: 121 GSTILHLAVLEKQVE 135
           G+TILHLAV++KQVE
Sbjct: 175 GNTILHLAVIDKQVE 189

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343887311|dbj|BAK61857.1| ankyrin repeat family protein [Citrus unshiu]

 Score =  207 bits (526), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 100/158 (63%), Positives = 127/158 (80%)

Query: 1   EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
           EI+ +KPE AGELDSRKASPLH+A+AKGYL IV KLVSVNPEMC+ RD DG+NPLH+AAI
Sbjct: 55  EIVSQKPELAGELDSRKASPLHVASAKGYLVIVKKLVSVNPEMCYVRDRDGRNPLHVAAI 114

Query: 61  RGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDN 120
           +G+VNVL+ELV+VRPQAA +LM+RG TILHACV YNQLES++ L++I +D EFVN K+++
Sbjct: 115 KGHVNVLRELVQVRPQAARMLMDRGETILHACVRYNQLESMKFLLDILSDREFVNYKNND 174

Query: 121 GSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSG 158
           G+TILHLAV +KQ E   +      ++ N     GL+ 
Sbjct: 175 GNTILHLAVADKQTEAIKVLTTSTTIEVNALNANGLAA 212

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081692|emb|CBI20697.3| unnamed protein product [Vitis vinifera]

 Score =  179 bits (454), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 89/159 (55%), Positives = 117/159 (73%), Gaps = 2/159 (1%)

Query: 1   EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
           EIL +KPE A ELD R++SPLHLAAAKGY++IV +L+ VNPEMC A D DG+NP+H+AA+
Sbjct: 24  EILLQKPELAAELDYRRSSPLHLAAAKGYIEIVKELLFVNPEMCLACDRDGRNPVHLAAM 83

Query: 61  RGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDN 120
           RG+V+VLKELV+ +P A    + RG TILH CV +NQLE+L+LLVE  + HE +++KDDN
Sbjct: 84  RGHVHVLKELVQAKPHATWAALPRGETILHLCVKHNQLEALKLLVETADAHEIMSAKDDN 143

Query: 121 GSTILHLAVLEKQVEVFYMDFDRNNMDNNI--FYGCGLS 157
           G TILHLAV +KQ+E         +++ N     GC  S
Sbjct: 144 GFTILHLAVADKQLETINYLLSSTSIEVNAVNLNGCTAS 182

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475962|ref|XP_002279591.2| PREDICTED: ankyrin repeat-containing protein At2g01680-like [Vitis vinifera]

 Score =  179 bits (454), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 89/159 (55%), Positives = 117/159 (73%), Gaps = 2/159 (1%)

Query: 1   EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
           EIL +KPE A ELD R++SPLHLAAAKGY++IV +L+ VNPEMC A D DG+NP+H+AA+
Sbjct: 51  EILLQKPELAAELDYRRSSPLHLAAAKGYIEIVKELLFVNPEMCLACDRDGRNPVHLAAM 110

Query: 61  RGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDN 120
           RG+V+VLKELV+ +P A    + RG TILH CV +NQLE+L+LLVE  + HE +++KDDN
Sbjct: 111 RGHVHVLKELVQAKPHATWAALPRGETILHLCVKHNQLEALKLLVETADAHEIMSAKDDN 170

Query: 121 GSTILHLAVLEKQVEVFYMDFDRNNMDNNI--FYGCGLS 157
           G TILHLAV +KQ+E         +++ N     GC  S
Sbjct: 171 GFTILHLAVADKQLETINYLLSSTSIEVNAVNLNGCTAS 209

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343887299|dbj|BAK61845.1| ankyrin repeat family protein [Citrus unshiu]

 Score =  172 bits (435), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 80/136 (58%), Positives = 103/136 (75%)

Query: 1   EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
           EILRR P  AGELDSR +SPLH+AA KGY+DIV +L+ VNP+MC ARD+DG+NPLH+AA+
Sbjct: 58  EILRRTPVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAM 117

Query: 61  RGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDN 120
           +G + VL EL + RP AA        T+LH CV +NQ E+L+ LV I ND +F+N+KDD 
Sbjct: 118 KGRIQVLVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDY 177

Query: 121 GSTILHLAVLEKQVEV 136
           G +ILHLAV +KQ+E 
Sbjct: 178 GMSILHLAVADKQIET 193

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092119|ref|XP_002309480.1| predicted protein [Populus trichocarpa] gi|222855456|gb|EEE93003.1| predicted protein [Populus trichocarpa]

 Score =  168 bits (426), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 82/157 (52%), Positives = 114/157 (72%)

Query: 1   EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
           +IL RKPE A ELD   +SPLHLA A G+L++V  L+SVNP+MCFA++ DG+NPLHIA I
Sbjct: 69  KILCRKPEFAKELDFLGSSPLHLATANGHLEVVRALLSVNPDMCFAQNRDGRNPLHIAVI 128

Query: 61  RGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDN 120
           +G V+VLKELV+ +P+A L    RG T+LH CV + QLE+L+LLVE   D+ F+NSKD++
Sbjct: 129 KGRVDVLKELVQNKPEAVLHRTARGETVLHLCVKHFQLEALKLLVETIKDYGFINSKDED 188

Query: 121 GSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLS 157
           GST+LHLAV +K++E+      +  ++ N     G +
Sbjct: 189 GSTVLHLAVADKEIEIISFLIMKTEIEVNAINASGFT 225

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560685|ref|XP_002521356.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223539434|gb|EEF41024.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/135 (53%), Positives = 103/135 (76%)

Query: 2   ILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIR 61
           +L RKP+ + ELDS +  PLHLA+A+GYLDIV +L+  +P+ C ARD +G+ PLH+AAI+
Sbjct: 69  LLSRKPKLSNELDSHRRLPLHLASAEGYLDIVKELLDASPDACSARDQEGRIPLHLAAIK 128

Query: 62  GNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNG 121
           G ++++KEL+++ P +    ++ G TILH CV YN+LE+L+LLVE   D EFVN+ DDNG
Sbjct: 129 GRIDIMKELLRICPDSMTEKLDHGKTILHLCVEYNRLEALKLLVETARDDEFVNASDDNG 188

Query: 122 STILHLAVLEKQVEV 136
           +TILHL+ + KQVE 
Sbjct: 189 NTILHLSAILKQVET 203

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453053|ref|XP_004144273.1| PREDICTED: ankyrin repeat-containing protein At2g01680-like [Cucumis sativus]

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 75/140 (53%), Positives = 101/140 (72%), Gaps = 4/140 (2%)

Query: 1   EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
           E+L+R P  A ELDSR  S LH AAA+G+LDIV  LV V+P+MC   + DG NP+H+AA+
Sbjct: 60  ELLKRIPRLAKELDSRGCSALHFAAAEGFLDIVKILVRVDPDMCSICNQDGMNPIHLAAM 119

Query: 61  RGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEI----RNDHEFVNS 116
           RG ++VL ELV+VRP AA   ++ G T+LH CV YNQLE+L++L+E       D+ F+NS
Sbjct: 120 RGRIDVLAELVRVRPTAARTAVDGGGTVLHLCVKYNQLEALKMLIETIGVKDRDNGFINS 179

Query: 117 KDDNGSTILHLAVLEKQVEV 136
           +D+ G TILHLAV  KQ++ 
Sbjct: 180 QDNYGFTILHLAVSNKQLQT 199

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
TAIR|locus:2176252	442	AT5G51160 "AT5G51160" [Arabido	0.842	0.303	0.352	1.2e-16
TAIR|locus:2172089	426	ANK "ankyrin" [Arabidopsis tha	0.987	0.368	0.309	1e-14
TAIR|locus:2065434	532	AT2G01680 "AT2G01680" [Arabido	0.710	0.212	0.347	5.7e-14
TAIR|locus:2172099	431	AT5G54620 [Arabidopsis thalian	0.861	0.317	0.312	3.5e-13
TAIR|locus:2181768	524	ANK1 "ankyrin-like1" [Arabidop	0.836	0.253	0.303	1.8e-12
TAIR|locus:2075009	607	AT3G09550 [Arabidopsis thalian	0.836	0.219	0.311	2.3e-12
TAIR|locus:2132711	445	AT4G10720 "AT4G10720" [Arabido	0.987	0.352	0.281	9.7e-12
TAIR|locus:2128791	683	AT4G03470 [Arabidopsis thalian	0.811	0.188	0.317	1.2e-11
TAIR|locus:2180882	457	AT5G15500 [Arabidopsis thalian	0.987	0.343	0.280	9.7e-11
TAIR|locus:2092522	590	ITN1 "INCREASED TOLERANCE TO N	0.735	0.198	0.336	1.2e-10

TAIR|locus:2176252 AT5G51160 "AT5G51160" [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 1.2e-16, P = 1.2e-16
 Identities = 49/139 (35%), Positives = 79/139 (56%)

Query:     1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
             +ILR++     +LD    SPLH AAA G ++ V   + V  ++C  +D DGK PLH+A +
Sbjct:    33 KILRQR--SVFDLDKNGFSPLHAAAAAGQVETVRATLGVEKKLCRLKDRDGKTPLHVATM 90

Query:    61 RGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEI---RNDHEFVNSK 117
             RG ++V++E+V            +G T LH  V + ++E++  +VE+    N  + +N K
Sbjct:    91 RGKIDVIREIVASCVDCLEDETVQGQTALHLAVLHLEIEAVIAIVELITETNRFDVLNKK 150

Query:   118 DDNGSTILHLAVLEKQVEV 136
             D+ G+T LHLA   K  +V
Sbjct:   151 DEQGNTALHLATWRKNRQV 169

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0006826 "iron ion transport" evidence=RCA

GO:0010043 "response to zinc ion" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2172089 ANK "ankyrin" [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 1.0e-14, P = 1.0e-14
 Identities = 51/165 (30%), Positives = 88/165 (53%)

Query:     1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
             E++  KP  A +L+    SPLHLA     +++ L+LV V+P +   R   G  PLH+ A 
Sbjct:    55 ELMILKPSFAKKLNEYGLSPLHLAVENDQVELALELVKVDPSLVRIRGRGGMTPLHLVAK 114

Query:    61 RGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLV----EIRN-DHEFV- 114
             +G+V++L + +   P++   +   G TILH  +  ++ E L++L     ++R+ D  F+ 
Sbjct:   115 KGDVDLLTDFLLACPESIKDVNVNGETILHITIMNDKYEQLKVLTGWMQKMRDSDDVFID 174

Query:   115 --NSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLS 157
               N +D  G+T+LHLA  E   +V        ++D NI    G++
Sbjct:   175 VLNRRDRGGNTVLHLAAYENNDKVVKQLVKCLSLDRNIQNKSGMT 219

GO:0005886 "plasma membrane" evidence=ISM

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0045087 "innate immune response" evidence=IMP

TAIR|locus:2065434 AT2G01680 "AT2G01680" [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 5.7e-14, P = 5.7e-14
 Identities = 40/115 (34%), Positives = 66/115 (57%)

Query:    22 HLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALIL 81
             H+AA +G+L IV +L+ + PE+C   D    +PL+ AA++ ++ ++  ++ V P  A+I+
Sbjct:    99 HVAAKRGHLGIVKELLRLWPELCRICDASNTSPLYAAAVQDHLEIVNAMLDVDPSCAMIV 158

Query:    82 MERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
              + G T LH    Y  L  ++ L+E   D   V  KD  G T LH+AV  + +EV
Sbjct:   159 RKNGKTSLHTAGRYGLLRIVKALIE--KDAAIVGVKDKKGQTALHMAVKGRSLEV 211

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2172099 AT5G54620 [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 3.5e-13, P = 3.5e-13
 Identities = 46/147 (31%), Positives = 74/147 (50%)

Query:     1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
             E++  KP  A +L+S   SPLHLA     + + L+LV +NP++       G  PLH+   
Sbjct:    55 ELMVLKPTFAKKLNSDGVSPLHLAVENHQVQLALELVKINPDLVLVAGRKGMTPLHLVVK 114

Query:    61 RGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVE-IRNDHE------- 112
             +G+ N+L E +   P++       G T LH  V  ++ E L++L   I   H+       
Sbjct:   115 KGDANLLTEFLLACPESIKDTNVNGETALHIAVMNDRYEELKVLTGWIHRLHKSDAASTE 174

Query:   113 --FVNSKDDNGSTILHLAVLEKQVEVF 137
                +N +D +G+TILHLA  +   + F
Sbjct:   175 IHVLNKRDRDGNTILHLAAYKNNHKAF 201

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2181768 ANK1 "ankyrin-like1" [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 1.8e-12, P = 1.8e-12
 Identities = 41/135 (30%), Positives = 73/135 (54%)

Query:     2 ILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIR 61
             ++   PE +   DS K + LH AA++G+ +IV  L+    ++      +GK  LH AA  
Sbjct:   110 LIEANPELSFTFDSSKTTALHTAASQGHGEIVCFLLDKGVDLAAIARSNGKTALHSAARN 169

Query:    62 GNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNG 121
             G+  ++K+L++ +      + ++G T LH  V     E + +L+E   D   +NS D+ G
Sbjct:   170 GHTVIVKKLIEKKAGMVTRVDKKGQTALHMAVKGQNTEIVDVLMEA--DGSLINSADNKG 227

Query:   122 STILHLAVLEKQVEV 136
             +T LH+AV + + E+
Sbjct:   228 NTPLHIAVRKNRAEI 242

GO:0005886 "plasma membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2075009 AT3G09550 [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 2.3e-12, P = 2.3e-12
 Identities = 42/135 (31%), Positives = 77/135 (57%)

Query:     2 ILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIR 61
             +L  +P+ +  +    A+PL  AA +G+ ++V +L++ +  +      +GKN LH+AA +
Sbjct:   197 LLEHEPQLSKTVAQSNATPLVSAATRGHSEVVNELLAKDSSLLEISRSNGKNALHLAARQ 256

Query:    62 GNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNG 121
             G+V++++ L+   PQ A    ++G T LH  V     + +RLL  +R D   V   D  G
Sbjct:   257 GHVDIVRTLLDKDPQLARRTDKKGQTSLHMAVKGVSSQVVRLL--LRADPAIVMLPDKFG 314

Query:   122 STILHLAVLEKQVEV 136
             +T+LH+A  +K+ E+
Sbjct:   315 NTVLHIATRKKRAEI 329

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2132711 AT4G10720 "AT4G10720" [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 9.7e-12, P = 9.7e-12
 Identities = 47/167 (28%), Positives = 82/167 (49%)

Query:     1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
             E++  KP  A +L++   SPLHLA  +G   +VL L+ V+ ++   R  +G  P H    
Sbjct:    55 ELMNLKPSFARKLNTYGLSPLHLAIEEGQTRLVLSLLKVDSDLVRLRGREGMTPFHQVVR 114

Query:    61 RGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLV----EIRN-DHE--- 112
             RG  +++ E +   P         G T LH  V+ ++ E L +L+     +R  D E   
Sbjct:   115 RGETDLMTEFLLACPGCIKDANVNGETALHIAVSNDRYEELEVLLGWVQRLRQTDAESLE 174

Query:   113 --FVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLS 157
               F+N +D +G+T LH+A  + + +   +    + ++ NI    GL+
Sbjct:   175 MQFLNKRDQDGNTALHIAAYQNRFKAVKILVKCSAVNRNIHNRTGLT 221

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128791 AT4G03470 [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 41/129 (31%), Positives = 63/129 (48%)

Query:     2 ILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIR 61
             IL   P    E D    + L   A+ GY   V  L++ + +  F  D DG  P+H+A  +
Sbjct:   289 ILNEYPSLVDERDEEGRTCLSFGASIGYHKGVCNLLNRSRKGVFVCDDDGSYPIHLAVEK 348

Query:    62 GNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNG 121
             G + V+KE+ K  P + L+L ++G  +LH      +   LR L      +   N KD +G
Sbjct:   349 GRIKVVKEICKRCPYSKLLLNKKGQNLLHIAAESGKFRILRHLTAHEQINHLANEKDVDG 408

Query:   122 STILHLAVL 130
             +T LHLA +
Sbjct:   409 NTPLHLATI 417

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2180882 AT5G15500 [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 9.7e-11, P = 9.7e-11
 Identities = 48/171 (28%), Positives = 85/171 (49%)

Query:     1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
             E++  KP  A +L++   +PLHLA   G+  +VL++V V+P +   +   G  PL +A  
Sbjct:    56 EMMNLKPSFARKLNADGLTPLHLAVEHGHFWLVLEVVKVDPSLVRIKGRHGMTPLLVAVS 115

Query:    61 RGNVNVLKELVKVRPQAALILMERGVTILHACVN-YNQLESLRLLVEI--------RNDH 111
             R  ++++ E     P++ +     G   LH  VN Y+Q E L +L  +        + D 
Sbjct:   116 RKKIDLMSEFFLGCPESIVDANVNGENALHIAVNNYDQREGLSVLKVLMGWILRLCQKDA 175

Query:   112 EFV-----NSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLS 157
             E++     N +D +G+T LHLA  E   +   +  + + ++ NI    GL+
Sbjct:   176 EWIETRVINRRDKDGNTPLHLAAYEINRQAMKLLLESSKINVNIENKNGLT 226

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2092522 ITN1 "INCREASED TOLERANCE TO NACL" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 40/119 (33%), Positives = 67/119 (56%)

Query:    18 ASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQA 77
             A+PL  AA +G+ ++V +L+S    +      + KN LH+AA +G+V V+K L+   PQ 
Sbjct:   199 ATPLVSAAMRGHTEVVNQLLSKAGNLLEISRSNNKNALHLAARQGHVEVIKALLSKDPQL 258

Query:    78 ALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
             A  + ++G T LH  V     E ++LL++   D   V   D + +T LH+A  +K+ E+
Sbjct:   259 ARRIDKKGQTALHMAVKGQSSEVVKLLLDA--DPAIVMQPDKSCNTALHVATRKKRAEI 315

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IPI

GO:0034613 "cellular protein localization" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00061573 hypothetical protein (471 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	159
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-19
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	9e-14
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-11
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-11
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	6e-10
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	7e-10
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-09
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-05
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	2e-05
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	3e-05
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	4e-05
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	1e-04
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-04
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	6e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.002
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.002

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 78.6 bits (194), Expect = 2e-19
 Identities = 42/123 (34%), Positives = 69/123 (56%), Gaps = 5/123 (4%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
           D    +PLHLAA+ G+L++V  L+    ++  A+D DG+ PLH+AA  G++ ++K L++ 
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLENGADVN-AKDNDGRTPLHLAAKNGHLEIVKLLLEK 62

Query: 74  RPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQ 133
                    + G T LH       L+ ++LL++   D   VN++D +G T LHLA     
Sbjct: 63  GADVN-ARDKDGNTPLHLAARNGNLDVVKLLLKHGAD---VNARDKDGRTPLHLAAKNGH 118

Query: 134 VEV 136
           +EV
Sbjct: 119 LEV 121

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 63.6 bits (155), Expect = 9e-14
 Identities = 37/108 (34%), Positives = 55/108 (50%), Gaps = 8/108 (7%)

Query: 46  ARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLV 105
           ARD DG+ PLH+AA  G++ V+K L++            G T LH       LE ++LL+
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGADVN-AKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 106 EIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYM----DFDRNNMDNN 149
           E   D   VN++D +G+T LHLA     ++V  +      D N  D +
Sbjct: 61  EKGAD---VNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKD 105

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 58.2 bits (141), Expect = 1e-11
 Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 2/92 (2%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
           D+   +PLHLAA  G+L+IV  L+    ++  ARD DG  PLH+AA  GN++V+K L+K 
Sbjct: 37  DNDGRTPLHLAAKNGHLEIVKLLLEKGADVN-ARDKDGNTPLHLAARNGNLDVVKLLLK- 94

Query: 74  RPQAALILMERGVTILHACVNYNQLESLRLLV 105
                    + G T LH       LE ++LL+
Sbjct: 95  HGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 56.1 bits (136), Expect = 3e-11
 Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 6/82 (7%)

Query: 55  LHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFV 114
           LH+AA  GN+ ++K L++     A + +    T LH       LE ++LL+E   D   V
Sbjct: 1   LHLAAKNGNLELVKLLLEKG---ADVNLGDTDTALHLAARNGNLEIVKLLLEHGAD---V 54

Query: 115 NSKDDNGSTILHLAVLEKQVEV 136
           N+KD +G+T LHLA     +E+
Sbjct: 55  NAKDKDGNTALHLAARNGNLEI 76

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 55.2 bits (132), Expect = 6e-10
 Identities = 42/139 (30%), Positives = 64/139 (46%), Gaps = 11/139 (7%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGN-----VNVLK 68
           D     PLH AA+KG   IV  L++   ++  A+D DG  PLH+AA+ GN     + V K
Sbjct: 70  DLDGRLPLHSAASKGDDKIVKLLLASGADVN-AKDADGDTPLHLAALNGNPPEGNIEVAK 128

Query: 69  ELVKVRPQAALI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILH 126
            L++      +     E G T LH        + + LL+E   D    NS++  G T L 
Sbjct: 129 LLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGAD---PNSRNSYGVTALD 185

Query: 127 LAVLEKQVEVFYMDFDRNN 145
            A    ++E+  +  D+  
Sbjct: 186 PAAKNGRIELVKLLLDKGL 204

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 52.6 bits (127), Expect = 7e-10
 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 16 RKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK 72
             + LHLAA  G L+IV  L+    ++  A+D DG   LH+AA  GN+ ++K L++
Sbjct: 27 DTDTALHLAARNGNLEIVKLLLEHGADVN-AKDKDGNTALHLAARNGNLEIVKLLLE 82

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 50.7 bits (122), Expect = 3e-09
 Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 7/98 (7%)

Query: 21  LHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALI 80
           LHLAA  G L++V  L+    ++      D    LH+AA  GN+ ++K L++        
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADV---NLGDTDTALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 81  LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKD 118
             + G T LH       LE ++LL+E   D   +N KD
Sbjct: 58  DKD-GNTALHLAARNGNLEIVKLLLEHGAD---INLKD 91

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 44.2 bits (105), Expect = 4e-07
 Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 19 SPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELV 71
          + LH AA  G L++V  L+          D DG   LHIAA  GN+ VLK L+
Sbjct: 3  TALHKAAISGRLELVKYLLE-KGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 40.8 bits (96), Expect = 1e-05
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 2  ILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIA 58
          +L   P      D    +PLHLAA  G L++V  L+         RD DG   L +A
Sbjct: 1  LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLL-KPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 21/147 (14%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLV----SVNPEMCFARDIDGKNPLHIAAIRGNVNVLKE 69
           DS+  +PLH+AA+KGY D VL L+    +V+      RD +G   L  A    +  + + 
Sbjct: 555 DSKGRTPLHIAASKGYEDCVLVLLKHACNVH-----IRDANGNTALWNAISAKHHKIFRI 609

Query: 70  LVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV 129
           L      A++        +L      N L +++ L++   +   V+S+D  G+T L +A+
Sbjct: 610 LYHF---ASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLN---VDSEDHQGATALQVAM 663

Query: 130 LEKQVEVFYM------DFDRNNMDNNI 150
            E  V++  +      D D+ N D++ 
Sbjct: 664 AEDHVDMVRLLIMNGADVDKANTDDDF 690

Length = 823

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 42.4 bits (99), Expect = 3e-05
 Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 7/138 (5%)

Query: 14  DSRKASPLHLAAA-KGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK 72
           D    +PLH A+      DIV+ L+ +   +  ARD   K P+H AA+R NV ++  L+ 
Sbjct: 338 DRLYITPLHQASTLDRNKDIVITLLELGANVN-ARDYCDKTPIHYAAVRNNVVIINTLLD 396

Query: 73  VRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEK 132
                  +  + G  +  A    N   S++ L++   +   VNSK+ + ST LH A  + 
Sbjct: 397 YGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGAN---VNSKNKDLSTPLHYACKKN 453

Query: 133 -QVEVFYMDFDRNNMDNN 149
            +++V  M  D N  D N
Sbjct: 454 CKLDVIEMLLD-NGADVN 470

Length = 682

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 42.3 bits (99), Expect = 4e-05
 Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 7/110 (6%)

Query: 20  PLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAAL 79
           P+H+A    + DI+ KL+         +D +G++PLH AA  G+   +K L+       +
Sbjct: 160 PIHIAIKHNFFDII-KLLLEKGAYANVKDNNGESPLHNAAEYGDYACIK-LLIDHGNHIM 217

Query: 80  ILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV 129
              + G T LH  + +N     R  +E+  ++  +N +D +GST LH A+
Sbjct: 218 NKCKNGFTPLHNAIIHN-----RSAIELLINNASINDQDIDGSTPLHHAI 262

Length = 434

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 35/160 (21%), Positives = 58/160 (36%), Gaps = 56/160 (35%)

Query: 21  LHLAAAKGYLDIVLKLV---------SVNPEMCFARDID----GKNPLHIAAIRGNVNVL 67
           LH A +  Y+D V  ++         S   E+   +       G   LH+AA R N  ++
Sbjct: 86  LH-AISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIV 144

Query: 68  KELVKVRPQAALILMERGVTI--------------------------LHACVNYNQLESL 101
           K           +L+ERG ++                            AC+       +
Sbjct: 145 K-----------LLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACL--GSPSIV 191

Query: 102 RLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDF 141
            LL E   D   + + D  G+T+LHL V+E + +  Y + 
Sbjct: 192 ALLSE---DPADILTADSLGNTLLHLLVMENEFKAEYEEL 228

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 4/106 (3%)

Query: 50  DGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRN 109
           D ++ LH A   G+V  ++EL+ +   A  +  + G+T LH      +L+ ++LL+    
Sbjct: 67  DIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGA 126

Query: 110 DHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFD-RNNMDNNIFYGC 154
           D +  N+   +  + LHLAV+   ++   +  D +  +D     GC
Sbjct: 127 DPDIPNT---DKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGC 169

Length = 413

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 36/145 (24%), Positives = 60/145 (41%), Gaps = 23/145 (15%)

Query: 14  DSRKASPLHLAAAK--GYLDIVLKLVSVNPEMCFARDIDGKNPLHIAA--IRGNVNVLKE 69
           D+   +PL  A +K      IV  L+     +   ++ DG+N LH+     + ++ +LK 
Sbjct: 103 DNNGITPLLYAISKKSNSYSIVEYLLDNGANV-NIKNSDGENLLHLYLESNKIDLKILKL 161

Query: 70  L--------VKVRPQAALILM-------ERGVTILHACVNYNQLESLRLLVEIRNDHEFV 114
           L         K R    L            G T LH  V  N  E ++ L+++  +    
Sbjct: 162 LIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGAN---P 218

Query: 115 NSKDDNGSTILHLAVLEKQVEVFYM 139
           N  +  G T LH+A+L    E+F +
Sbjct: 219 NLVNKYGDTPLHIAILNNNKEIFKL 243

Length = 422

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 34.9 bits (81), Expect = 0.002
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 85  GVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYM 139
           G T LH      +LE ++ L+E   D   +N  D++G+T LH+A     +EV  +
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVD---INRTDEDGNTALHIAAENGNLEVLKL 52

Length = 54

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 34.1 bits (79), Expect = 0.002
 Identities = 11/23 (47%), Positives = 17/23 (73%)

Query: 50 DGKNPLHIAAIRGNVNVLKELVK 72
          DG  PLH+AA  G++ V+K L++
Sbjct: 1  DGNTPLHLAARNGHLEVVKLLLE 23

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	159
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
PHA02791	284	ankyrin-like protein; Provisional	99.97
PHA02875	413	ankyrin repeat protein; Provisional	99.97
PHA02878	477	ankyrin repeat protein; Provisional	99.96
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.96
PHA02946	446	ankyin-like protein; Provisional	99.96
PHA02791	284	ankyrin-like protein; Provisional	99.96
PHA02874	434	ankyrin repeat protein; Provisional	99.96
PHA02875	413	ankyrin repeat protein; Provisional	99.96
PHA02874	434	ankyrin repeat protein; Provisional	99.95
PHA03100	480	ankyrin repeat protein; Provisional	99.95
PHA02878	477	ankyrin repeat protein; Provisional	99.95
PHA02798	489	ankyrin-like protein; Provisional	99.95
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.95
PHA02946	446	ankyin-like protein; Provisional	99.95
PHA02989	494	ankyrin repeat protein; Provisional	99.95
PHA03100	480	ankyrin repeat protein; Provisional	99.94
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.94
PHA02859	209	ankyrin repeat protein; Provisional	99.94
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.94
PHA03095	471	ankyrin-like protein; Provisional	99.94
PHA02743	166	Viral ankyrin protein; Provisional	99.94
KOG0510	929	consensus Ankyrin repeat protein [General function	99.94
PHA03095	471	ankyrin-like protein; Provisional	99.93
PHA02876	682	ankyrin repeat protein; Provisional	99.93
PHA02876	682	ankyrin repeat protein; Provisional	99.93
KOG0514	452	consensus Ankyrin repeat protein [General function	99.92
PHA02795	437	ankyrin-like protein; Provisional	99.92
PHA02989	494	ankyrin repeat protein; Provisional	99.92
PHA02798	489	ankyrin-like protein; Provisional	99.92
PHA02741	169	hypothetical protein; Provisional	99.92
KOG0508	615	consensus Ankyrin repeat protein [General function	99.92
PHA02859	209	ankyrin repeat protein; Provisional	99.92
PHA02795	437	ankyrin-like protein; Provisional	99.92
KOG0510	929	consensus Ankyrin repeat protein [General function	99.91
PHA02917	661	ankyrin-like protein; Provisional	99.9
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.9
PHA02736	154	Viral ankyrin protein; Provisional	99.9
PHA02917	661	ankyrin-like protein; Provisional	99.89
KOG0508	615	consensus Ankyrin repeat protein [General function	99.89
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.89
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.89
PHA02884	300	ankyrin repeat protein; Provisional	99.88
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.88
PHA02743	166	Viral ankyrin protein; Provisional	99.88
PHA02730	672	ankyrin-like protein; Provisional	99.88
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.88
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.86
PHA02730	672	ankyrin-like protein; Provisional	99.85
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.85
PHA02741	169	hypothetical protein; Provisional	99.84
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.84
PHA02884	300	ankyrin repeat protein; Provisional	99.84
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.83
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.82
PHA02792	631	ankyrin-like protein; Provisional	99.81
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.8
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.79
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.79
KOG0514	452	consensus Ankyrin repeat protein [General function	99.79
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.78
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.77
PHA02792	631	ankyrin-like protein; Provisional	99.77
PHA02736	154	Viral ankyrin protein; Provisional	99.76
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.75
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.75
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.72
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.71
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.7
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.66
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.64
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.63
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.62
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.61
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.61
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.57
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.57
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.55
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.55
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.53
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.52
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.49
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.47
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.45
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.44
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.39
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.2
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	99.1
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.08
PF13606	30	Ank_3: Ankyrin repeat	98.98
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.97
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.91
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.85
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.84
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.83
KOG0522	560	consensus Ankyrin repeat protein [General function	98.81
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.8
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.78
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.76
KOG0522	560	consensus Ankyrin repeat protein [General function	98.76
PF13606	30	Ank_3: Ankyrin repeat	98.74
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.57
KOG2384	223	consensus Major histocompatibility complex protein	98.5
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.47
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.47
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.26
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.18
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.12
KOG0511	516	consensus Ankyrin repeat protein [General function	98.05
KOG0511	516	consensus Ankyrin repeat protein [General function	97.95
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.89
KOG2384	223	consensus Major histocompatibility complex protein	97.68
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.51
KOG2505	591	consensus Ankyrin repeat protein [General function	97.39
KOG2505	591	consensus Ankyrin repeat protein [General function	97.13
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.94
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	94.69
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	94.5
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	93.94
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	92.1
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	89.36
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	85.12

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.4e-36  Score=182.36  Aligned_cols=147  Identities=29%  Similarity=0.299  Sum_probs=116.0

Q ss_pred             ccccccC-CCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCC
Q 035643            9 QAGELDS-RKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVT   87 (159)
Q Consensus         9 ~~~~~~~-~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t   87 (159)
                      .++.++. +|+|||||||..|+.+++.+|+++.....+.+|..|+||||+|+..|+.++++.|+.+.+...+..++.|.|
T Consensus        29 SL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T  108 (226)
T KOG4412|consen   29 SLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQT  108 (226)
T ss_pred             hhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcc
Confidence            5566666 788888888888888888888854333335678888888888888888888888888656666777778888


Q ss_pred             chhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643           88 ILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus        88 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      +||||+..+..+++++|++.|+.   +..+|..|.||||.|+..|+.+++++|+..+ ...+..|..|+||+
T Consensus       109 ~LHyAagK~r~eIaqlLle~ga~---i~~kD~~~qtplHRAAavGklkvie~Li~~~-a~~n~qDk~G~TpL  176 (226)
T KOG4412|consen  109 CLHYAAGKGRLEIAQLLLEKGAL---IRIKDKQGQTPLHRAAAVGKLKVIEYLISQG-APLNTQDKYGFTPL  176 (226)
T ss_pred             eehhhhcCChhhHHHHHHhcCCC---CcccccccCchhHHHHhccchhhHHHHHhcC-CCCCcccccCccHH
Confidence            88888888888888888888877   7888888888888888888888888888884 77788888888874

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.2e-34  Score=171.84  Aligned_cols=147  Identities=24%  Similarity=0.311  Sum_probs=137.4

Q ss_pred             cCCCccccccCCCCCHHHHHHHhCChHHHHHHhhc-CCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhcc
Q 035643            5 RKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSV-NPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILME   83 (159)
Q Consensus         5 ~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~   83 (159)
                      +.+..+|.+|..||||||.|+..|+.++|+.|+.+ ++++ +.....|.|+||||+..|..+++++|++ ++..+..+|.
T Consensus        60 q~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~adv-na~tn~G~T~LHyAagK~r~eIaqlLle-~ga~i~~kD~  137 (226)
T KOG4412|consen   60 QPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADV-NATTNGGQTCLHYAAGKGRLEIAQLLLE-KGALIRIKDK  137 (226)
T ss_pred             cCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCc-ceecCCCcceehhhhcCChhhHHHHHHh-cCCCCccccc
Confidence            78889999999999999999999999999999998 8887 6899999999999999999999999999 5588889999


Q ss_pred             CCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCC
Q 035643           84 RGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSG  158 (159)
Q Consensus        84 ~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~  158 (159)
                      .|.||||-|+.-|..+++++|+..++.   ++.+|..|+||||.|...|..++..+|++.+ ++....|..| |+
T Consensus       138 ~~qtplHRAAavGklkvie~Li~~~a~---~n~qDk~G~TpL~~al~e~~~d~a~lLV~~g-Ad~~~edke~-t~  207 (226)
T KOG4412|consen  138 QGQTPLHRAAAVGKLKVIEYLISQGAP---LNTQDKYGFTPLHHALAEGHPDVAVLLVRAG-ADTDREDKEG-TA  207 (226)
T ss_pred             ccCchhHHHHhccchhhHHHHHhcCCC---CCcccccCccHHHHHHhccCchHHHHHHHhc-cceeeccccC-ch
Confidence            999999999999999999999999998   9999999999999998888999999999995 7888888877 54

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=3.1e-30  Score=181.55  Aligned_cols=152  Identities=21%  Similarity=0.222  Sum_probs=109.3

Q ss_pred             ccccCCCcccccc-CCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhh
Q 035643            2 ILRRKPEQAGELD-SRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALI   80 (159)
Q Consensus         2 ll~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~   80 (159)
                      +|+.+|++||... .-+.||||||+++|+..++..|+++|+++ ..+|.+|.+|+|.|+..++.-++.+++.++ .+...
T Consensus        96 ~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdp-t~~D~~G~~~lHla~~~~~~~~vayll~~~-~d~d~  173 (600)
T KOG0509|consen   96 YLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADP-TLKDKQGLTPLHLAAQFGHTALVAYLLSKG-ADIDL  173 (600)
T ss_pred             HHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCC-ceecCCCCcHHHHHHHhCchHHHHHHHHhc-ccCCC
Confidence            5667777777776 34777777777777777777777777776 467777777777777777777777777644 55556


Q ss_pred             hccCCCCchhhhhhcCChhHHHHHHhhcCCcccccccc-CCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643           81 LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKD-DNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus        81 ~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      +|.+|+||||+|+..+....+..|+..++.   +...| ++|.||||+|+..|+..++. |+..++.+....+..|.||+
T Consensus       174 ~D~~grTpLmwAaykg~~~~v~~LL~f~a~---~~~~d~~~g~TpLHwa~~~gN~~~v~-Ll~~g~~~~d~~~~~g~tp~  249 (600)
T KOG0509|consen  174 RDNNGRTPLMWAAYKGFALFVRRLLKFGAS---LLLTDDNHGNTPLHWAVVGGNLTAVK-LLLEGGADLDKTNTNGKTPF  249 (600)
T ss_pred             cCCCCCCHHHHHHHhcccHHHHHHHHhccc---ccccccccCCchHHHHHhcCCcceEe-hhhhcCCcccccccCCCCHH
Confidence            677777777777777777667777777777   66666 77888888888888888888 55555667777777777764

>PHA02791 ankyrin-like protein; Provisional

Probab=99.97  E-value=4.9e-30  Score=171.83  Aligned_cols=147  Identities=16%  Similarity=0.187  Sum_probs=121.1

Q ss_pred             ccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCC-CcHHHHHHHhCCHHHHHHHHhcCchhhhh
Q 035643            2 ILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDG-KNPLHIAAIRGNVNVLKELVKVRPQAALI   80 (159)
Q Consensus         2 ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~-~~~l~~a~~~~~~~~~~~l~~~~~~~~~~   80 (159)
                      +|+..|++++.+|..|.||||+|+..|+.++++.|++.++++ +.++..| .||||+|+..++.+++++|++.++...  
T Consensus        79 lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadi-n~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~--  155 (284)
T PHA02791         79 ILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF--  155 (284)
T ss_pred             HHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCccc--
Confidence            577888999999999999999999999999999999988877 4566666 489999999999999999988543221  


Q ss_pred             hccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCH-HHHHHHhCCcceeeeccCCCccCcccccCCC
Q 035643           81 LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTI-LHLAVLEKQVEVFYMDFDRNNMDNNIFYGCG  155 (159)
Q Consensus        81 ~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tp-l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g  155 (159)
                      ....|.||||+|+..|+.+++++|++.|++   ++.+|..|.|| ||+|+..|+.+++++|+++ |.+++..+..|
T Consensus       156 d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd---~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~-Ga~in~~~~~~  227 (284)
T PHA02791        156 DLAILLSCIHITIKNGHVDMMILLLDYMTS---TNTNNSLLFIPDIKLAIDNKDLEMLQALFKY-DINIYSVNLEN  227 (284)
T ss_pred             ccccCccHHHHHHHcCCHHHHHHHHHCCCC---CCcccCCCCChHHHHHHHcCCHHHHHHHHHC-CCCCccCcccC
Confidence            112478999999999999999999999998   78888888876 9999999999999999988 56777776643

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.97  E-value=4.7e-30  Score=181.73  Aligned_cols=153  Identities=21%  Similarity=0.191  Sum_probs=111.4

Q ss_pred             ccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhh
Q 035643            2 ILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALIL   81 (159)
Q Consensus         2 ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~   81 (159)
                      +|++.|++++..+.+|.||||+|+..|+.+++++|++.++++ +..+..+.+|||+|+..|+.+++++|++.+.......
T Consensus        20 ~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~   98 (413)
T PHA02875         20 RLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIP-DVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVF   98 (413)
T ss_pred             HHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-cccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccc
Confidence            577888888888888899999999888889998888888776 4566667777777777777777777777554444444


Q ss_pred             ccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643           82 MERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus        82 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      +..|.||||+|+..++.+++++|++.|++   ++.++..|.||||+|+..|+.+++++|++. +.+++..+..|.||+
T Consensus        99 ~~~g~tpL~~A~~~~~~~iv~~Ll~~gad---~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~TpL  172 (413)
T PHA02875         99 YKDGMTPLHLATILKKLDIMKLLIARGAD---PDIPNTDKFSPLHLAVMMGDIKGIELLIDH-KACLDIEDCCGCTPL  172 (413)
T ss_pred             cCCCCCHHHHHHHhCCHHHHHHHHhCCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCCHH
Confidence            55567777777777777777777777776   666666777777777777777777777766 445666666666653

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.96  E-value=2.1e-29  Score=181.17  Aligned_cols=151  Identities=24%  Similarity=0.232  Sum_probs=136.9

Q ss_pred             CccccCCCccccccCC-CCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhh
Q 035643            1 EILRRKPEQAGELDSR-KASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAAL   79 (159)
Q Consensus         1 ~ll~~~~~~~~~~~~~-g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~   79 (159)
                      ++|+++|++++..+.. |.||||+|+..|+.++++.|++.++++ +..+..|.||||+|+..++.+++++|++. +....
T Consensus       151 ~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~-ga~in  228 (477)
T PHA02878        151 KLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANV-NIPDKTNNSPLHHAVKHYNKPIVHILLEN-GASTD  228 (477)
T ss_pred             HHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCCHHHHHHHHHc-CCCCC
Confidence            3678899999999999 999999999999999999999999988 68999999999999999999999999994 45566


Q ss_pred             hhccCCCCchhhhhhc-CChhHHHHHHhhcCCccccccccC-CCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCC
Q 035643           80 ILMERGVTILHACVNY-NQLESLRLLVEIRNDHEFVNSKDD-NGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLS  157 (159)
Q Consensus        80 ~~~~~~~t~l~~a~~~-~~~~~~~~Ll~~~~~~~~~~~~~~-~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~  157 (159)
                      .++..|.||||+|+.. ++.+++++|++.|++   ++.++. .|.||||+|  .+..+++++|+++ |++++..+..|.|
T Consensus       229 ~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gad---vn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~-gadin~~d~~g~T  302 (477)
T PHA02878        229 ARDKCGNTPLHISVGYCKDYDILKLLLEHGVD---VNAKSYILGLTALHSS--IKSERKLKLLLEY-GADINSLNSYKLT  302 (477)
T ss_pred             CCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCC---CCccCCCCCCCHHHHH--ccCHHHHHHHHHC-CCCCCCcCCCCCC
Confidence            7788999999999975 689999999999999   888776 799999999  4678999999999 6789999999999


Q ss_pred             CC
Q 035643          158 GY  159 (159)
Q Consensus       158 ~~  159 (159)
                      |+
T Consensus       303 pL  304 (477)
T PHA02878        303 PL  304 (477)
T ss_pred             HH
Confidence            85

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.96  E-value=1.5e-29  Score=178.15  Aligned_cols=151  Identities=21%  Similarity=0.253  Sum_probs=136.0

Q ss_pred             ccC-CCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhc
Q 035643            4 RRK-PEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILM   82 (159)
Q Consensus         4 ~~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~   82 (159)
                      .+. |++++..|++|.++||||+.+++++++++|++++++++..-...+.||||+|+++|+..++..|++ .+.++..+|
T Consensus        64 ve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlq-hGAdpt~~D  142 (600)
T KOG0509|consen   64 VESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQ-HGADPTLKD  142 (600)
T ss_pred             HhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHH-cCCCCceec
Confidence            344 999999999999999999999999999999999999954444888999999999999999999999 667777889


Q ss_pred             cCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCccccc-CCCCCCC
Q 035643           83 ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFY-GCGLSGY  159 (159)
Q Consensus        83 ~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~-~~g~~~~  159 (159)
                      .+|.+|+|.|++.++.-.+-+++..+++   ++.+|.+|+||||+|+.+|....+..|+.-++ .....+ ..|.||+
T Consensus       143 ~~G~~~lHla~~~~~~~~vayll~~~~d---~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a-~~~~~d~~~g~TpL  216 (600)
T KOG0509|consen  143 KQGLTPLHLAAQFGHTALVAYLLSKGAD---IDLRDNNGRTPLMWAAYKGFALFVRRLLKFGA-SLLLTDDNHGNTPL  216 (600)
T ss_pred             CCCCcHHHHHHHhCchHHHHHHHHhccc---CCCcCCCCCCHHHHHHHhcccHHHHHHHHhcc-cccccccccCCchH
Confidence            9999999999999999999999999988   89999999999999999998887888888855 444444 7899885

>PHA02946 ankyin-like protein; Provisional

Probab=99.96  E-value=7.3e-29  Score=176.24  Aligned_cols=153  Identities=20%  Similarity=0.224  Sum_probs=115.9

Q ss_pred             CccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCC--HHHHHHHHhcCchhh
Q 035643            1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGN--VNVLKELVKVRPQAA   78 (159)
Q Consensus         1 ~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~--~~~~~~l~~~~~~~~   78 (159)
                      ++|+++|+++|.+|.+|.||||+|+..|+.++++.|+++++++ +.+|..|.||||+|+..+.  .+++++|++.+....
T Consensus        56 ~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdi-n~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin  134 (446)
T PHA02946         56 EELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADP-NACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKIN  134 (446)
T ss_pred             HHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcc
Confidence            3578899999999999999999999999999999999999988 6899999999999987653  678888887554433


Q ss_pred             hhh--------------------------------ccCCCCchhhhhhcC--ChhHHHHHHhhcCCccccccccCCCCCH
Q 035643           79 LIL--------------------------------MERGVTILHACVNYN--QLESLRLLVEIRNDHEFVNSKDDNGSTI  124 (159)
Q Consensus        79 ~~~--------------------------------~~~~~t~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~~~~~tp  124 (159)
                      ...                                +..|.||||+|+..+  +.+++++|++.|++   ++.+|..|.||
T Consensus       135 ~~~d~~g~tpL~aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gad---in~~d~~G~Tp  211 (446)
T PHA02946        135 NSVDEEGCGPLLACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGIS---PSKPDHDGNTP  211 (446)
T ss_pred             cccCCCCCcHHHHHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCC---CcccCCCCCCH
Confidence            223                                344555555554433  24566777777777   67777888888


Q ss_pred             HHHHHHhC--CcceeeeccCCCccCcccccCCCCCCC
Q 035643          125 LHLAVLEK--QVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus       125 l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      ||+|+..+  ..+++++|+.  +.+++..+..|.||+
T Consensus       212 LH~Aa~~~~~~~~iv~lLl~--gadin~~d~~G~TpL  246 (446)
T PHA02946        212 LHIVCSKTVKNVDIINLLLP--STDVNKQNKFGDSPL  246 (446)
T ss_pred             HHHHHHcCCCcHHHHHHHHc--CCCCCCCCCCCCCHH
Confidence            88888765  5667777764  467777778888774

>PHA02791 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.5e-28  Score=164.75  Aligned_cols=147  Identities=19%  Similarity=0.137  Sum_probs=106.1

Q ss_pred             ccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhh
Q 035643            2 ILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALIL   81 (159)
Q Consensus         2 ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~   81 (159)
                      +|++.|++++..+  |.||||+|+..|+.++++.|++.++++ +.++..|.||||+|+..++.+++++|++.+.. ...+
T Consensus        48 ~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~Gadv-n~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gad-in~~  123 (284)
T PHA02791         48 TLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGMDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR-LMFY  123 (284)
T ss_pred             HHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cCcc
Confidence            4666777776653  577888887777788887777777776 56777778888888888888888888774433 3334


Q ss_pred             ccCC-CCchhhhhhcCChhHHHHHHhhcCCcccccccc-CCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCC
Q 035643           82 MERG-VTILHACVNYNQLESLRLLVEIRNDHEFVNSKD-DNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSG  158 (159)
Q Consensus        82 ~~~~-~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~  158 (159)
                      +..| .||||+|+..++.+++++|++.+.+   .  .| ..|.||||+|+..|+.+++++|+++ +.+++..+..|.||
T Consensus       124 ~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~---~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~~-gAd~n~~d~~g~t~  196 (284)
T PHA02791        124 GKTGWKTSFYHAVMLNDVSIVSYFLSEIPS---T--FDLAILLSCIHITIKNGHVDMMILLLDY-MTSTNTNNSLLFIP  196 (284)
T ss_pred             CCCCCcHHHHHHHHcCCHHHHHHHHhcCCc---c--cccccCccHHHHHHHcCCHHHHHHHHHC-CCCCCcccCCCCCh
Confidence            4455 4788888888888888888776544   1  22 2478888888888888888888888 45777777777765

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.6e-28  Score=174.85  Aligned_cols=155  Identities=23%  Similarity=0.275  Sum_probs=122.2

Q ss_pred             ccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhh
Q 035643            2 ILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALIL   81 (159)
Q Consensus         2 ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~   81 (159)
                      +|++.|++++..+..|.||||+|+..|+.+++++|++.++++ +.++..|.||||+|+..++.+++++|++.+ ......
T Consensus       109 ~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g-~~~n~~  186 (434)
T PHA02874        109 TILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADV-NIEDDNGCYPIHIAIKHNFFDIIKLLLEKG-AYANVK  186 (434)
T ss_pred             HHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHCCcHHHHHHHHHCC-CCCCCC
Confidence            456778888888888999999999999999999998888887 578888889999999999999999988844 444456


Q ss_pred             ccCCCCchhhhhhcCChhHHHHHHhhcCCc----------------------------cccccccCCCCCHHHHHHHhC-
Q 035643           82 MERGVTILHACVNYNQLESLRLLVEIRNDH----------------------------EFVNSKDDNGSTILHLAVLEK-  132 (159)
Q Consensus        82 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~----------------------------~~~~~~~~~~~tpl~~a~~~~-  132 (159)
                      +..|.||||+|+..|+.+++++|++.|++.                            ..++.+|..|.||||+|+..+ 
T Consensus       187 ~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~~~i~~Ll~~~~in~~d~~G~TpLh~A~~~~~  266 (434)
T PHA02874        187 DNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIELLINNASINDQDIDGSTPLHHAINPPC  266 (434)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCChHHHHHHHcCCCCCCcCCCCCCHHHHHHhcCC
Confidence            777889999999888888888888877651                            114556667778888887754 


Q ss_pred             CcceeeeccCCCccCcccccCCCCCCC
Q 035643          133 QVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus       133 ~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      ..+++++|+++ +.+++..+..|.||+
T Consensus       267 ~~~iv~~Ll~~-gad~n~~d~~g~TpL  292 (434)
T PHA02874        267 DIDIIDILLYH-KADISIKDNKGENPI  292 (434)
T ss_pred             cHHHHHHHHHC-cCCCCCCCCCCCCHH
Confidence            67788888877 567777888888764

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.96  E-value=2.6e-28  Score=172.86  Aligned_cols=151  Identities=21%  Similarity=0.244  Sum_probs=123.2

Q ss_pred             CccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhh
Q 035643            1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALI   80 (159)
Q Consensus         1 ~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~   80 (159)
                      ++|++.|++++..+..+.||||.|+..|+.++++.|++.+.......+..|.||||+|+..++.+++++|++.+ .....
T Consensus        52 ~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g-ad~~~  130 (413)
T PHA02875         52 KLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARG-ADPDI  130 (413)
T ss_pred             HHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCC-CCCCC
Confidence            35778888888888888899999999999999999888887665566777888999999988899999888844 44555


Q ss_pred             hccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCC
Q 035643           81 LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGL  156 (159)
Q Consensus        81 ~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~  156 (159)
                      .+..|.||||+|+..++.+++++|++.|++   ++.+|..|.||||+|+..|+.+++++|++. |.+++..+..|.
T Consensus       131 ~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~---~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~-ga~~n~~~~~~~  202 (413)
T PHA02875        131 PNTDKFSPLHLAVMMGDIKGIELLIDHKAC---LDIEDCCGCTPLIIAMAKGDIAICKMLLDS-GANIDYFGKNGC  202 (413)
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhcCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCcCCCCCC
Confidence            677788899999988888888888888888   788888888999999888888888888888 445665555553

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.95  E-value=3.7e-28  Score=172.99  Aligned_cols=152  Identities=21%  Similarity=0.253  Sum_probs=99.6

Q ss_pred             ccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCcc----------------------ceecCCCCCcHHHHHH
Q 035643            2 ILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEM----------------------CFARDIDGKNPLHIAA   59 (159)
Q Consensus         2 ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~----------------------~~~~~~~~~~~l~~a~   59 (159)
                      +|++.|++++..+..|.||||.|+..|+.+++++|++.+.+.                      .+.++..|.||||+|+
T Consensus        53 ~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~  132 (434)
T PHA02874         53 LFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAI  132 (434)
T ss_pred             HHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHH
Confidence            456667777776666777777777777776666666554331                      1245566677777777


Q ss_pred             HhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeee
Q 035643           60 IRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYM  139 (159)
Q Consensus        60 ~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~  139 (159)
                      ..|+.+++++|++.+ .....++..|.||||+|+..++.+++++|++.|++   ++..+..|.||||+|+..|..+++++
T Consensus       133 ~~~~~~~v~~Ll~~g-ad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~---~n~~~~~g~tpL~~A~~~g~~~iv~~  208 (434)
T PHA02874        133 KKGDLESIKMLFEYG-ADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAY---ANVKDNNGESPLHNAAEYGDYACIKL  208 (434)
T ss_pred             HCCCHHHHHHHHhCC-CCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            777777777777633 33444566677777777777777777777777766   66667777777777777777777777


Q ss_pred             ccCCCccCcccccCCCCCC
Q 035643          140 DFDRNNMDNNIFYGCGLSG  158 (159)
Q Consensus       140 ll~~~~~~~~~~~~~g~~~  158 (159)
                      |++.+ .+++..+..|.||
T Consensus       209 Ll~~g-~~i~~~~~~g~Tp  226 (434)
T PHA02874        209 LIDHG-NHIMNKCKNGFTP  226 (434)
T ss_pred             HHhCC-CCCcCCCCCCCCH
Confidence            77763 3444555555554

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.95  E-value=2.7e-28  Score=175.67  Aligned_cols=152  Identities=27%  Similarity=0.280  Sum_probs=104.9

Q ss_pred             ccccCCCccccccCCCCCHHHHHHHhC--ChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhh
Q 035643            2 ILRRKPEQAGELDSRKASPLHLAAAKG--YLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAAL   79 (159)
Q Consensus         2 ll~~~~~~~~~~~~~g~t~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~   79 (159)
                      +|+++|++++..+..|.||||+|+..+  +.++++.|++.++++ +.++..|.||||+|+..|+.+++++|++.+. ...
T Consensus       126 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~di-n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga-~~~  203 (480)
T PHA03100        126 YLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDI-NAKNRYGYTPLHIAVEKGNIDVIKFLLDNGA-DIN  203 (480)
T ss_pred             HHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCc-ccccCCCCCHHHHHHHhCCHHHHHHHHHcCC-Ccc
Confidence            455666666666666666666666666  666666666666655 4555566666666666666666666666332 223


Q ss_pred             hhccCC------CCchhhhhhcCC--hhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccc
Q 035643           80 ILMERG------VTILHACVNYNQ--LESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIF  151 (159)
Q Consensus        80 ~~~~~~------~t~l~~a~~~~~--~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~  151 (159)
                      ..+..+      .||+|.|+..++  .+++++|++.|++   ++.+|..|.||||+|+..++.+++++|++.|+ +++..
T Consensus       204 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~d---in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga-d~n~~  279 (480)
T PHA03100        204 AGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVP---INIKDVYGFTPLHYAVYNNNPEFVKYLLDLGA-NPNLV  279 (480)
T ss_pred             CCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCcc
Confidence            333444      566666666666  6777777777777   77788889999999999999999999998854 88888


Q ss_pred             cCCCCCCC
Q 035643          152 YGCGLSGY  159 (159)
Q Consensus       152 ~~~g~~~~  159 (159)
                      +..|.||+
T Consensus       280 d~~g~tpl  287 (480)
T PHA03100        280 NKYGDTPL  287 (480)
T ss_pred             CCCCCcHH
Confidence            88888874

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.95  E-value=3.5e-28  Score=174.86  Aligned_cols=153  Identities=21%  Similarity=0.263  Sum_probs=129.5

Q ss_pred             CccccCCCccccccCCCCCHHHHHHHhCChH-------------------------------------------------
Q 035643            1 EILRRKPEQAGELDSRKASPLHLAAAKGYLD-------------------------------------------------   31 (159)
Q Consensus         1 ~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~-------------------------------------------------   31 (159)
                      ++|++.|++++..|.+|.||||+||..|+.+                                                 
T Consensus        54 k~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~  133 (477)
T PHA02878         54 KSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDL  133 (477)
T ss_pred             HHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcH
Confidence            3578999999999999999999999876544                                                 


Q ss_pred             ---------------HHHHHhhcCCccceecCCC-CCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhc
Q 035643           32 ---------------IVLKLVSVNPEMCFARDID-GKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNY   95 (159)
Q Consensus        32 ---------------~~~~ll~~~~~~~~~~~~~-~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~   95 (159)
                                     +++.|++.|+++ +..+.. |.||||+|+..|+.+++++|++.+ ......+..|.||||.|+..
T Consensus       134 ~~~~~~~~~~~~~~~iv~~Ll~~gadi-n~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~g-ad~n~~d~~g~tpLh~A~~~  211 (477)
T PHA02878        134 VYIDKKSKDDIIEAEITKLLLSYGADI-NMKDRHKGNTALHYATENKDQRLTELLLSYG-ANVNIPDKTNNSPLHHAVKH  211 (477)
T ss_pred             HHHhhccchhhHHHHHHHHHHHcCCCC-CccCCCCCCCHHHHHHhCCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHh
Confidence                           445555566665 456666 999999999999999999999955 45566788899999999999


Q ss_pred             CChhHHHHHHhhcCCccccccccCCCCCHHHHHHHh-CCcceeeeccCCCccCcccccC-CCCCCC
Q 035643           96 NQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLE-KQVEVFYMDFDRNNMDNNIFYG-CGLSGY  159 (159)
Q Consensus        96 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~-~~~~~~~~ll~~~~~~~~~~~~-~g~~~~  159 (159)
                      ++.+++++|++.|++   ++.+|..|.||||+|+.. +..+++++|+++ +.+++..+. .|.||+
T Consensus       212 ~~~~iv~~Ll~~ga~---in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~-gadvn~~~~~~g~TpL  273 (477)
T PHA02878        212 YNKPIVHILLENGAS---TDARDKCGNTPLHISVGYCKDYDILKLLLEH-GVDVNAKSYILGLTAL  273 (477)
T ss_pred             CCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHhcCCHHHHHHHHHc-CCCCCccCCCCCCCHH
Confidence            999999999999999   899999999999999975 689999999999 556666654 788874

>PHA02798 ankyrin-like protein; Provisional

Probab=99.95  E-value=4.4e-28  Score=174.72  Aligned_cols=157  Identities=20%  Similarity=0.212  Sum_probs=125.0

Q ss_pred             CccccCCCccccccCCCCCHHHHHHHhC---ChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCC---HHHHHHHHhcC
Q 035643            1 EILRRKPEQAGELDSRKASPLHLAAAKG---YLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGN---VNVLKELVKVR   74 (159)
Q Consensus         1 ~ll~~~~~~~~~~~~~g~t~l~~a~~~~---~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~---~~~~~~l~~~~   74 (159)
                      ++|+++|+++|.+|.+|.||||+|+.++   +.+++++|++.|+++ +.+|..|.||||+|+..++   .+++++|++.+
T Consensus        93 ~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~g  171 (489)
T PHA02798         93 KILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADT-TLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKG  171 (489)
T ss_pred             HHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCc-cccCCCCCcHHHHHHHcCCcchHHHHHHHHHhC
Confidence            3577888889988888999999888875   678888888888887 6788888899998888877   88888888865


Q ss_pred             chhhhhhccCCCCchhhhhhc----CChhHHHHHHhhcCCcc------------------------------------cc
Q 035643           75 PQAALILMERGVTILHACVNY----NQLESLRLLVEIRNDHE------------------------------------FV  114 (159)
Q Consensus        75 ~~~~~~~~~~~~t~l~~a~~~----~~~~~~~~Ll~~~~~~~------------------------------------~~  114 (159)
                      .......+..|.||+|.++..    ++.+++++|++.|++..                                    .+
T Consensus       172 adin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dv  251 (489)
T PHA02798        172 VDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDI  251 (489)
T ss_pred             CCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCC
Confidence            544444445678888887654    36778888877665411                                    14


Q ss_pred             ccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643          115 NSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus       115 ~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      +.+|..|.||||+|+..++.+++++|++. |++++..+..|.||+
T Consensus       252 N~~d~~G~TPL~~A~~~~~~~~v~~LL~~-GAdin~~d~~G~TpL  295 (489)
T PHA02798        252 NQVDELGFNPLYYSVSHNNRKIFEYLLQL-GGDINIITELGNTCL  295 (489)
T ss_pred             CCcCcCCccHHHHHHHcCcHHHHHHHHHc-CCcccccCCCCCcHH
Confidence            45677899999999999999999999998 678999999999974

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.95  E-value=5.7e-28  Score=178.01  Aligned_cols=153  Identities=19%  Similarity=0.245  Sum_probs=114.5

Q ss_pred             CccccCCCccccccCCCCCHHHHHHHhCC--hHHHHHHhhcCCccceecCCCCCcHHHHHH-------------------
Q 035643            1 EILRRKPEQAGELDSRKASPLHLAAAKGY--LDIVLKLVSVNPEMCFARDIDGKNPLHIAA-------------------   59 (159)
Q Consensus         1 ~ll~~~~~~~~~~~~~g~t~l~~a~~~~~--~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~-------------------   59 (159)
                      |+|+++|++++.+|..|.||||+|+..|+  .++++.|++.|+++ +.++..|.||||+|+                   
T Consensus       196 klLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADV-N~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d  274 (764)
T PHA02716        196 EWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDM-DMKCVNGMSPIMTYIINIDNINPEITNIYIESLD  274 (764)
T ss_pred             HHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhcc
Confidence            35777888888888888888888888874  47888888888887 577888888888653                   


Q ss_pred             ------------------HhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhh--cCChhHHHHHHhhcCCccccccccC
Q 035643           60 ------------------IRGNVNVLKELVKVRPQAALILMERGVTILHACVN--YNQLESLRLLVEIRNDHEFVNSKDD  119 (159)
Q Consensus        60 ------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~--~~~~~~~~~Ll~~~~~~~~~~~~~~  119 (159)
                                        ..|+.+++++|++.+ .....++..|.||||+|+.  .++.+++++|++.|++   ++.+|.
T Consensus       275 ~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~G-AdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GAD---IN~kD~  350 (764)
T PHA02716        275 GNKVKNIPMILHSYITLARNIDISVVYSFLQPG-VKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGND---LNEPDN  350 (764)
T ss_pred             ccccccchhhhHHHHHHHHcCCHHHHHHHHhCC-CceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCC---CccCCC
Confidence                              335566777777743 3445567778888887654  3567888888888888   788888


Q ss_pred             CCCCHHHHHHH--------------hCCcceeeeccCCCccCcccccCCCCCCC
Q 035643          120 NGSTILHLAVL--------------EKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus       120 ~~~tpl~~a~~--------------~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      .|.||||+|+.              .++.+++++|+++ |++++..+..|.||+
T Consensus       351 ~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~-GADIn~kn~~G~TPL  403 (764)
T PHA02716        351 IGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISL-GADITAVNCLGYTPL  403 (764)
T ss_pred             CCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHC-CCCCCCcCCCCCChH
Confidence            88888888764              2567888888887 567888888888874

>PHA02946 ankyin-like protein; Provisional

Probab=99.95  E-value=2.4e-27  Score=168.53  Aligned_cols=140  Identities=18%  Similarity=0.245  Sum_probs=103.5

Q ss_pred             CccccCCCccccccCCCCCHHHHHHHhC--ChHHHHHHhhcCCccceecCCCCCcHH-----------------------
Q 035643            1 EILRRKPEQAGELDSRKASPLHLAAAKG--YLDIVLKLVSVNPEMCFARDIDGKNPL-----------------------   55 (159)
Q Consensus         1 ~ll~~~~~~~~~~~~~g~t~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~~~~~l-----------------------   55 (159)
                      ++|+++|++++.+|..|.||||+|+..+  ..++++.|++.++++....+..|.||+                       
T Consensus        89 ~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~aa~~~~~~vv~~Ll~~gad~~~  168 (446)
T PHA02946         89 AMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLLACTDPSERVFKKIMSIGFEARI  168 (446)
T ss_pred             HHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHHHHHCCChHHHHHHHhccccccc
Confidence            3577888888888888888888887755  367777777777766433455555555                       


Q ss_pred             ---------HHHHHhC--CHHHHHHHHhcCchhhhhhccCCCCchhhhhhcC--ChhHHHHHHhhcCCccccccccCCCC
Q 035643           56 ---------HIAAIRG--NVNVLKELVKVRPQAALILMERGVTILHACVNYN--QLESLRLLVEIRNDHEFVNSKDDNGS  122 (159)
Q Consensus        56 ---------~~a~~~~--~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~~~~~  122 (159)
                               |+|+..+  +.+++++|++ .+.....+|..|.||||+|+..+  +.+++++|++ +++   ++.+|..|.
T Consensus       169 ~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~-~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gad---in~~d~~G~  243 (446)
T PHA02946        169 VDKFGKNHIHRHLMSDNPKASTISWMMK-LGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STD---VNKQNKFGD  243 (446)
T ss_pred             cCCCCCCHHHHHHHhcCCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCC---CCCCCCCCC
Confidence                     4443322  2345555555 33444556888999999999876  7789998885 788   899999999


Q ss_pred             CHHHHHHHhCC-cceeeeccCCCc
Q 035643          123 TILHLAVLEKQ-VEVFYMDFDRNN  145 (159)
Q Consensus       123 tpl~~a~~~~~-~~~~~~ll~~~~  145 (159)
                      ||||+|+..+. .+++++|+++++
T Consensus       244 TpLh~A~~~~~~~~~~~~Ll~~g~  267 (446)
T PHA02946        244 SPLTLLIKTLSPAHLINKLLSTSN  267 (446)
T ss_pred             CHHHHHHHhCChHHHHHHHHhCCC
Confidence            99999999887 478899999864

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.95  E-value=2.3e-27  Score=171.18  Aligned_cols=158  Identities=16%  Similarity=0.112  Sum_probs=132.3

Q ss_pred             CccccCCCccccccCCCCCHHHHHHHh---CChHHHHHHhhcCCccceecCCCCCcHHHHHHHh--CCHHHHHHHHhcCc
Q 035643            1 EILRRKPEQAGELDSRKASPLHLAAAK---GYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIR--GNVNVLKELVKVRP   75 (159)
Q Consensus         1 ~ll~~~~~~~~~~~~~g~t~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~--~~~~~~~~l~~~~~   75 (159)
                      ++|+++|+++|.+|..|.||||.|+..   ++.++++.|+++|+++.+.++..|.||||+|+..  ++.+++++|++.+.
T Consensus        92 ~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Ga  171 (494)
T PHA02989         92 KLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGV  171 (494)
T ss_pred             HHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCC
Confidence            368899999999999999999988765   6799999999999988557899999999998764  57899999999665


Q ss_pred             hhhhhhccCCCCchhhhhhcC----ChhHHHHHHhhcCCccc-----------------------------------ccc
Q 035643           76 QAALILMERGVTILHACVNYN----QLESLRLLVEIRNDHEF-----------------------------------VNS  116 (159)
Q Consensus        76 ~~~~~~~~~~~t~l~~a~~~~----~~~~~~~Ll~~~~~~~~-----------------------------------~~~  116 (159)
                      ......+..|.||||.|+..+    +.+++++|++.|++...                                   ++.
T Consensus       172 di~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~  251 (494)
T PHA02989        172 NLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINK  251 (494)
T ss_pred             CccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCC
Confidence            554435678999999987654    78899999988876211                                   345


Q ss_pred             ccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643          117 KDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus       117 ~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      +|..|.||||+|+..++.+++++|++. |++++..+..|.||+
T Consensus       252 ~d~~G~TpL~~Aa~~~~~~~v~~LL~~-Gadin~~d~~G~TpL  293 (494)
T PHA02989        252 KDKKGFNPLLISAKVDNYEAFNYLLKL-GDDIYNVSKDGDTVL  293 (494)
T ss_pred             CCCCCCCHHHHHHHhcCHHHHHHHHHc-CCCccccCCCCCCHH
Confidence            567799999999999999999999999 668999999999974

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.94  E-value=2.7e-27  Score=170.54  Aligned_cols=151  Identities=23%  Similarity=0.267  Sum_probs=92.5

Q ss_pred             ccccCCCccccccCCCCCHHHHHH--HhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhC--CHHHHHHHHhcCchh
Q 035643            2 ILRRKPEQAGELDSRKASPLHLAA--AKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRG--NVNVLKELVKVRPQA   77 (159)
Q Consensus         2 ll~~~~~~~~~~~~~g~t~l~~a~--~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~l~~~~~~~   77 (159)
                      +|++.|++++..|..|.||||+|+  ..|+.++++.|++.+++. +..+..|.||+|+|+..+  +.+++++|++.+ ..
T Consensus        91 ~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g-~d  168 (480)
T PHA03100         91 LLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANV-NIKNSDGENLLHLYLESNKIDLKILKLLIDKG-VD  168 (480)
T ss_pred             HHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCChHHHHHHHHHCC-CC
Confidence            455666666666666666666666  666666666666666655 455666666666666666  666666666633 33


Q ss_pred             hhhhccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCC------CCHHHHHHHhCC--cceeeeccCCCccCcc
Q 035643           78 ALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNG------STILHLAVLEKQ--VEVFYMDFDRNNMDNN  149 (159)
Q Consensus        78 ~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~------~tpl~~a~~~~~--~~~~~~ll~~~~~~~~  149 (159)
                      ....+..|.||||+|+..++.+++++|++.|++   ++..+..+      .||+|.|+..+.  .+++++|++. |.+++
T Consensus       169 in~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~---~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~-g~din  244 (480)
T PHA03100        169 INAKNRYGYTPLHIAVEKGNIDVIKFLLDNGAD---INAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSY-GVPIN  244 (480)
T ss_pred             cccccCCCCCHHHHHHHhCCHHHHHHHHHcCCC---ccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHc-CCCCC
Confidence            333444566666666666666666666666666   55555555      566666666666  6666666666 44556


Q ss_pred             cccCCCCCC
Q 035643          150 IFYGCGLSG  158 (159)
Q Consensus       150 ~~~~~g~~~  158 (159)
                      ..+..|.||
T Consensus       245 ~~d~~g~Tp  253 (480)
T PHA03100        245 IKDVYGFTP  253 (480)
T ss_pred             CCCCCCCCH
Confidence            666666665

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.94  E-value=4e-27  Score=178.18  Aligned_cols=149  Identities=24%  Similarity=0.294  Sum_probs=133.6

Q ss_pred             ccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhh
Q 035643            2 ILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALIL   81 (159)
Q Consensus         2 ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~   81 (159)
                      .|++.|+++|..|..|.||||+|+..|+.++++.|+++++++ +.+|..|.||||+|+..|+.++++.|++.... .  .
T Consensus       543 ~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadi-n~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~-~--~  618 (823)
T PLN03192        543 ELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV-HIRDANGNTALWNAISAKHHKIFRILYHFASI-S--D  618 (823)
T ss_pred             HHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCC-CCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcc-c--C
Confidence            477899999999999999999999999999999999999988 68999999999999999999999999984332 2  2


Q ss_pred             ccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCC-CCC
Q 035643           82 MERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCG-LSG  158 (159)
Q Consensus        82 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g-~~~  158 (159)
                      ...+.++||.|+..|+.++++.|++.|++   ++.+|..|.||||+|+..|+.+++++|+++ +++++..+..| .+|
T Consensus       619 ~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gad---in~~d~~G~TpLh~A~~~g~~~iv~~Ll~~-GAdv~~~~~~g~~t~  692 (823)
T PLN03192        619 PHAAGDLLCTAAKRNDLTAMKELLKQGLN---VDSEDHQGATALQVAMAEDHVDMVRLLIMN-GADVDKANTDDDFSP  692 (823)
T ss_pred             cccCchHHHHHHHhCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHCCcHHHHHHHHHc-CCCCCCCCCCCCCCH
Confidence            34577999999999999999999999999   899999999999999999999999999998 56777777766 543

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.94  E-value=1.2e-26  Score=150.32  Aligned_cols=144  Identities=17%  Similarity=0.203  Sum_probs=124.3

Q ss_pred             cccccCCCCCHHHHHHHhC--ChHHHHHHhhcCCccceecC-CCCCcHHHHHHHh---CCHHHHHHHHhcCchhhhhhcc
Q 035643           10 AGELDSRKASPLHLAAAKG--YLDIVLKLVSVNPEMCFARD-IDGKNPLHIAAIR---GNVNVLKELVKVRPQAALILME   83 (159)
Q Consensus        10 ~~~~~~~g~t~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~-~~~~~~l~~a~~~---~~~~~~~~l~~~~~~~~~~~~~   83 (159)
                      ++..|..|.||||+|+.++  +.++++.|++.++++. .++ ..|.||||+|+..   +..+++++|++ .+...+.++.
T Consensus        44 ~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn-~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~-~gadin~~d~  121 (209)
T PHA02859         44 VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVN-FKTRDNNLSALHHYLSFNKNVEPEILKILID-SGSSITEEDE  121 (209)
T ss_pred             hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCC-ccCCCCCCCHHHHHHHhCccccHHHHHHHHH-CCCCCCCcCC
Confidence            6778899999999999855  8999999999999984 565 5899999998764   47899999999 4556667888


Q ss_pred             CCCCchhhhhh--cCChhHHHHHHhhcCCccccccccCCCCCHHHH-HHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643           84 RGVTILHACVN--YNQLESLRLLVEIRNDHEFVNSKDDNGSTILHL-AVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus        84 ~~~t~l~~a~~--~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~-a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      .|.||||.|+.  .++.+++++|++.|++   ++.+|..|.||+|. |+..++.+++++|++. +.+++..+..|.||+
T Consensus       122 ~G~TpLh~a~~~~~~~~~iv~~Li~~gad---in~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~-Gadi~~~d~~g~tpl  196 (209)
T PHA02859        122 DGKNLLHMYMCNFNVRINVIKLLIDSGVS---FLNKDFDNNNILYSYILFHSDKKIFDFLTSL-GIDINETNKSGYNCY  196 (209)
T ss_pred             CCCCHHHHHHHhccCCHHHHHHHHHcCCC---cccccCCCCcHHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCCHH
Confidence            99999999876  4678999999999999   89999999999996 5667899999999998 668889999999874

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.94  E-value=7.3e-27  Score=172.23  Aligned_cols=153  Identities=16%  Similarity=0.153  Sum_probs=132.4

Q ss_pred             CccccCC-Cccccc-cCCCCCHHHHHHHh--CChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCC--HHHHHHHHhcC
Q 035643            1 EILRRKP-EQAGEL-DSRKASPLHLAAAK--GYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGN--VNVLKELVKVR   74 (159)
Q Consensus         1 ~ll~~~~-~~~~~~-~~~g~t~l~~a~~~--~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~--~~~~~~l~~~~   74 (159)
                      |+|++.| +++|.. |..|.||||+|+..  ++.+++++|++.|+++ +.+|..|.||||+|+..|+  .+++++|++.+
T Consensus       159 k~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADV-N~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~G  237 (764)
T PHA02716        159 KYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNV-NLQNNHLITPLHTYLITGNVCASVIKKIIELG  237 (764)
T ss_pred             HHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcC
Confidence            4678899 999998 89999999998754  5789999999999998 6899999999999999985  58999999955


Q ss_pred             chhhhhhccCCCCchhhhh-------------------------------------hcCChhHHHHHHhhcCCccccccc
Q 035643           75 PQAALILMERGVTILHACV-------------------------------------NYNQLESLRLLVEIRNDHEFVNSK  117 (159)
Q Consensus        75 ~~~~~~~~~~~~t~l~~a~-------------------------------------~~~~~~~~~~Ll~~~~~~~~~~~~  117 (159)
                       ...+.++..|.||||+|+                                     ..++.+++++|++.|++   ++.+
T Consensus       238 -ADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAd---IN~k  313 (764)
T PHA02716        238 -GDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVK---LHYK  313 (764)
T ss_pred             -CCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCc---eecc
Confidence             556667889999999753                                     34677889999999999   8999


Q ss_pred             cCCCCCHHHHHHH--hCCcceeeeccCCCccCcccccCCCCCCC
Q 035643          118 DDNGSTILHLAVL--EKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus       118 ~~~~~tpl~~a~~--~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      |..|+||||+|+.  .+..+++++|++. |.+++..+..|+||+
T Consensus       314 D~~G~TPLH~Aaa~~~~~~eIVklLLe~-GADIN~kD~~G~TPL  356 (764)
T PHA02716        314 DSAGRTCLHQYILRHNISTDIIKLLHEY-GNDLNEPDNIGNTVL  356 (764)
T ss_pred             CCCCCCHHHHHHHHhCCCchHHHHHHHc-CCCCccCCCCCCCHH
Confidence            9999999999875  4578999999998 578899999999985

>PHA03095 ankyrin-like protein; Provisional

Probab=99.94  E-value=9.1e-27  Score=167.46  Aligned_cols=152  Identities=24%  Similarity=0.201  Sum_probs=122.6

Q ss_pred             CccccCCCccccccCCCCCHHHHHHHhC---ChHHHHHHhhcCCccceecCCCCCcHHHHHHHhC-CHHHHHHHHhcCch
Q 035643            1 EILRRKPEQAGELDSRKASPLHLAAAKG---YLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRG-NVNVLKELVKVRPQ   76 (159)
Q Consensus         1 ~ll~~~~~~~~~~~~~g~t~l~~a~~~~---~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~-~~~~~~~l~~~~~~   76 (159)
                      |+|++.|++++..+..|.||||+|+..+   +.++++.|++.|+++ +.++..|.||||+|+..+ ..+++++|++. +.
T Consensus        31 ~~Ll~~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadi-n~~~~~g~TpLh~A~~~~~~~~iv~lLl~~-ga  108 (471)
T PHA03095         31 RRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADV-NAPERCGFTPLHLYLYNATTLDVIKLLIKA-GA  108 (471)
T ss_pred             HHHHHcCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCcHHHHHHHHHc-CC
Confidence            3577889999999999999999999888   899999999999888 578888999999999988 58899999884 45


Q ss_pred             hhhhhccCCCCchhhhh--hcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhC--CcceeeeccCCCccCccccc
Q 035643           77 AALILMERGVTILHACV--NYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEK--QVEVFYMDFDRNNMDNNIFY  152 (159)
Q Consensus        77 ~~~~~~~~~~t~l~~a~--~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~--~~~~~~~ll~~~~~~~~~~~  152 (159)
                      .....+..|.||||+|+  ..++.+++++|++.|++   ++..|..|.||||+|+..+  ..+++++|++.| .+.+..+
T Consensus       109 ~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad---~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g-~~~~~~d  184 (471)
T PHA03095        109 DVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGAD---VNALDLYGMTPLAVLLKSRNANVELLRLLIDAG-ADVYAVD  184 (471)
T ss_pred             CCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCC---CCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcC-CCCcccC
Confidence            55667778899999988  45577889999998888   7888888888888888765  567788888874 3444446


Q ss_pred             CCCCCC
Q 035643          153 GCGLSG  158 (159)
Q Consensus       153 ~~g~~~  158 (159)
                      ..|.|+
T Consensus       185 ~~g~t~  190 (471)
T PHA03095        185 DRFRSL  190 (471)
T ss_pred             CCCCCH
Confidence            666665

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.94  E-value=3.5e-26  Score=143.15  Aligned_cols=147  Identities=16%  Similarity=0.139  Sum_probs=124.0

Q ss_pred             cCCCccccccCCCCCHHHHHHHhCCh----HHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHH---HHHHHHhcCchh
Q 035643            5 RKPEQAGELDSRKASPLHLAAAKGYL----DIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVN---VLKELVKVRPQA   77 (159)
Q Consensus         5 ~~~~~~~~~~~~g~t~l~~a~~~~~~----~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~---~~~~l~~~~~~~   77 (159)
                      .++++++..+.++.++||.|++.|+.    +++++|++.+..+ +.+|..|+||||+|+..+..+   ++++|++.+ ..
T Consensus         8 ~~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~-~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~G-ad   85 (166)
T PHA02743          8 GNNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLL-HRYDHHGRQCTHMVAWYDRANAVMKIELLVNMG-AD   85 (166)
T ss_pred             ccchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhh-hccCCCCCcHHHHHHHhCccCHHHHHHHHHHcC-CC
Confidence            46888999999999999999999998    5555666777766 578999999999999998765   478999855 44


Q ss_pred             hhhhc-cCCCCchhhhhhcCChhHHHHHHh-hcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCC
Q 035643           78 ALILM-ERGVTILHACVNYNQLESLRLLVE-IRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCG  155 (159)
Q Consensus        78 ~~~~~-~~~~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g  155 (159)
                      ...++ ..|.||||+|+..++.+++++|++ .+++   ++.++..|.||||+|+..++.+++++|+++ +.+.+..+..|
T Consensus        86 in~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad---~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~-ga~~~~~~~~~  161 (166)
T PHA02743         86 INARELGTGNTLLHIAASTKNYELAEWLCRQLGVN---LGAINYQHETAYHIAYKMRDRRMMEILRAN-GAVCDDPLSIG  161 (166)
T ss_pred             CCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCC---ccCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcccCC
Confidence            44555 579999999999999999999995 7888   888999999999999999999999999998 46777666666


Q ss_pred             CC
Q 035643          156 LS  157 (159)
Q Consensus       156 ~~  157 (159)
                      .+
T Consensus       162 ~~  163 (166)
T PHA02743        162 LS  163 (166)
T ss_pred             cc
Confidence            54

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.94  E-value=1.5e-26  Score=166.91  Aligned_cols=149  Identities=23%  Similarity=0.291  Sum_probs=132.2

Q ss_pred             ccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHh-cCchhhhhhccCCCC
Q 035643            9 QAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK-VRPQAALILMERGVT   87 (159)
Q Consensus         9 ~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~-~~~~~~~~~~~~~~t   87 (159)
                      -+|..|.+|+||||+|++.|+++++..|+..|++. +.++.++.||||.|+++|+.+.++.|++ .+....+..|-.|.|
T Consensus       265 lv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I-~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~t  343 (929)
T KOG0510|consen  265 LVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASI-NSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMT  343 (929)
T ss_pred             HhhcccccCCchHHHHHHcCChhHHHHHHHcCCcc-cccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCC
Confidence            46788999999999999999999999999999998 6788999999999999999999999999 566667778888999


Q ss_pred             chhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643           88 ILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus        88 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      |||.|+..|+.++++.|+..|+.-......|.+|.||||.|+..|+..++++|+.+ |+++..++..|.|.|
T Consensus       344 pLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~-Ga~I~~~n~~g~SA~  414 (929)
T KOG0510|consen  344 PLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISH-GADIGVKNKKGKSAF  414 (929)
T ss_pred             chhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHc-CCceeeccccccccc
Confidence            99999999999999999999988321125599999999999999999999999999 667777777776654

>PHA03095 ankyrin-like protein; Provisional

Probab=99.93  E-value=6.2e-26  Score=163.17  Aligned_cols=153  Identities=19%  Similarity=0.174  Sum_probs=108.5

Q ss_pred             ccccCCCccccccCCCCCHHHHHH--HhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhC--CHHHHHHHHhcCch-
Q 035643            2 ILRRKPEQAGELDSRKASPLHLAA--AKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRG--NVNVLKELVKVRPQ-   76 (159)
Q Consensus         2 ll~~~~~~~~~~~~~g~t~l~~a~--~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~l~~~~~~-   76 (159)
                      +|+++|++++.++..|.||||+|+  ..++.++++.|++.++++ +..+..|.||+|+|+..+  ..+++++|++.+.. 
T Consensus       102 lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~-~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~  180 (471)
T PHA03095        102 LLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADV-NALDLYGMTPLAVLLKSRNANVELLRLLIDAGADV  180 (471)
T ss_pred             HHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCC
Confidence            566777777777777777777777  344667777777777766 456666677777666544  35556666553222 


Q ss_pred             ---------------------------------hhhhhccCCCCchhhhhhcCCh--hHHHHHHhhcCCccccccccCCC
Q 035643           77 ---------------------------------AALILMERGVTILHACVNYNQL--ESLRLLVEIRNDHEFVNSKDDNG  121 (159)
Q Consensus        77 ---------------------------------~~~~~~~~~~t~l~~a~~~~~~--~~~~~Ll~~~~~~~~~~~~~~~~  121 (159)
                                                       ....++..|.||||+|+..+..  .+++.+++.|.+   ++.+|..|
T Consensus       181 ~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~d---in~~d~~g  257 (471)
T PHA03095        181 YAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGIS---INARNRYG  257 (471)
T ss_pred             cccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCC---CCCcCCCC
Confidence                                             2223455566666666666543  456677777777   88889999


Q ss_pred             CCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643          122 STILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus       122 ~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      .||||+|+..|+.+++++|++. |++++..+..|.||+
T Consensus       258 ~TpLh~A~~~~~~~~v~~LL~~-gad~n~~~~~g~tpl  294 (471)
T PHA03095        258 QTPLHYAAVFNNPRACRRLIAL-GADINAVSSDGNTPL  294 (471)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHH
Confidence            9999999999999999999988 668888889998874

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.93  E-value=6.9e-26  Score=169.06  Aligned_cols=154  Identities=22%  Similarity=0.195  Sum_probs=122.1

Q ss_pred             CccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCch----
Q 035643            1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQ----   76 (159)
Q Consensus         1 ~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~----   76 (159)
                      ++|++.|++++.+|..|.||||+|+..|+.+++++|++.|++. +..+..|.+|+|+|+..++.++++.+++.+..    
T Consensus       162 k~Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~-n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~  240 (682)
T PHA02876        162 EMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADV-NIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKN  240 (682)
T ss_pred             HHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCc-CccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCC
Confidence            4688999999999999999999999999999999999999988 57888889999999999888888877763321    


Q ss_pred             ------------------------hhhhhccCCCCchhhhhhcCCh-hHHHHHHhhcCCccccccccCCCCCHHHHHHHh
Q 035643           77 ------------------------AALILMERGVTILHACVNYNQL-ESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLE  131 (159)
Q Consensus        77 ------------------------~~~~~~~~~~t~l~~a~~~~~~-~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~  131 (159)
                                              .....+..|.||||+|+..++. +++++|++.|++   ++.+|..|.||||+|+..
T Consensus       241 ~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gad---in~~d~~g~TpLh~Aa~~  317 (682)
T PHA02876        241 DLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGAD---VNAKNIKGETPLYLMAKN  317 (682)
T ss_pred             cHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHHh
Confidence                                    1223355688888888888775 577888888888   777888888888888887


Q ss_pred             C-CcceeeeccCCCccCcccccCCCCCCC
Q 035643          132 K-QVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus       132 ~-~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      | ..+++++|+.. +.+++..+..|.||+
T Consensus       318 g~~~~~v~~Ll~~-gadin~~d~~g~TpL  345 (682)
T PHA02876        318 GYDTENIRTLIML-GADVNAADRLYITPL  345 (682)
T ss_pred             CCCHHHHHHHHHc-CCCCCCcccCCCcHH
Confidence            7 46777777766 456666666666653

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.93  E-value=7.7e-26  Score=168.82  Aligned_cols=151  Identities=28%  Similarity=0.310  Sum_probs=102.3

Q ss_pred             cccCCCccccccCCCCCHHHHHHHhC-ChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhh
Q 035643            3 LRRKPEQAGELDSRKASPLHLAAAKG-YLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALIL   81 (159)
Q Consensus         3 l~~~~~~~~~~~~~g~t~l~~a~~~~-~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~   81 (159)
                      |+..|++++..|..|.||||+|+..+ ..++++.|++.+.++ +.+|..|.||||+|+..++.+++++|++.+ ......
T Consensus       327 Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadi-n~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~g-ad~~~~  404 (682)
T PHA02876        327 LIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANV-NARDYCDKTPIHYAAVRNNVVIINTLLDYG-ADIEAL  404 (682)
T ss_pred             HHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCC-ccCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCcccc
Confidence            44455555555555555555555432 455555566666655 456666777777777777777777777643 333444


Q ss_pred             ccCCCCchhhhhhcCC-hhHHHHHHhhcCCccccccccCCCCCHHHHHHHhC-CcceeeeccCCCccCcccccCCCCCCC
Q 035643           82 MERGVTILHACVNYNQ-LESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEK-QVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus        82 ~~~~~t~l~~a~~~~~-~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~-~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      +..|.||||+|+..+. ..++++|++.|++   ++.+|..|+||||+|+..+ ..+++++|++. |.+++..+..|.||+
T Consensus       405 ~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gad---in~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~-Gad~n~~d~~g~tpl  480 (682)
T PHA02876        405 SQKIGTALHFALCGTNPYMSVKTLIDRGAN---VNSKNKDLSTPLHYACKKNCKLDVIEMLLDN-GADVNAINIQNQYPL  480 (682)
T ss_pred             CCCCCchHHHHHHcCCHHHHHHHHHhCCCC---CCcCCCCCChHHHHHHHhCCcHHHHHHHHHC-CCCCCCCCCCCCCHH
Confidence            5566677777765544 3456777777777   7888999999999999876 67899999998 678888888988874

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.92  E-value=4.5e-26  Score=151.79  Aligned_cols=147  Identities=22%  Similarity=0.251  Sum_probs=132.0

Q ss_pred             ccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHh-----CCHHHHHHHHhcCchhhhhhcc
Q 035643            9 QAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIR-----GNVNVLKELVKVRPQAALILME   83 (159)
Q Consensus         9 ~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~-----~~~~~~~~l~~~~~~~~~~~~~   83 (159)
                      .||..|.+|+|+|||++..+++++|+.||+.+--..+.++.-|+||++.++..     .+.+++..|.. .+.++.....
T Consensus       260 vVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~-mgnVNaKAsQ  338 (452)
T KOG0514|consen  260 VVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFK-MGDVNAKASQ  338 (452)
T ss_pred             HhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHh-ccCcchhhhh
Confidence            57889999999999999999999999999987655588999999999998753     35677888887 4455555667


Q ss_pred             CCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643           84 RGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus        84 ~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      .|+|+|++|+.+|+.++++.||..|++   ++.+|.+|-|+|+.|+.+|+.+++++||....++..+.|..|.|.|
T Consensus       339 ~gQTALMLAVSHGr~d~vk~LLacgAd---VNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl  411 (452)
T KOG0514|consen  339 HGQTALMLAVSHGRVDMVKALLACGAD---VNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTAL  411 (452)
T ss_pred             hcchhhhhhhhcCcHHHHHHHHHccCC---CccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhh
Confidence            799999999999999999999999999   9999999999999999999999999999999999999999999875

>PHA02795 ankyrin-like protein; Provisional

Probab=99.92  E-value=1.8e-25  Score=155.81  Aligned_cols=152  Identities=14%  Similarity=0.073  Sum_probs=132.4

Q ss_pred             CccccCCCccc------cccCCCCCHHHHHHH--hCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHh
Q 035643            1 EILRRKPEQAG------ELDSRKASPLHLAAA--KGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK   72 (159)
Q Consensus         1 ~ll~~~~~~~~------~~~~~g~t~l~~a~~--~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~   72 (159)
                      ++|+.+|++++      ..+..++|+||.++.  .|+.+++++|+++|+++ +..  .+.||+|+|+..++.+++++|++
T Consensus        94 ~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADI-n~~--~~~t~lh~A~~~~~~eIVk~Lls  170 (437)
T PHA02795         94 SALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVI-YKI--ECLNAYFRGICKKESSVVEFILN  170 (437)
T ss_pred             HHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCC-CCC--CCCCHHHHHHHcCcHHHHHHHHh
Confidence            35778889988      788889999999999  88999999999999998 343  44799999999999999999999


Q ss_pred             cCchhhhhh-----ccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccC
Q 035643           73 VRPQAALIL-----MERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMD  147 (159)
Q Consensus        73 ~~~~~~~~~-----~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~  147 (159)
                      .+.......     +..+.+++|.|...+..+++++|++.|++   ++.+|..|.||||+|+..|+.+++++|+++ |++
T Consensus       171 ~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GAD---IN~kD~~G~TpLh~Aa~~g~~eiVelLL~~-GAd  246 (437)
T PHA02795        171 CGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIED---INQLDAGGRTLLYRAIYAGYIDLVSWLLEN-GAN  246 (437)
T ss_pred             cCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCC---cCcCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCC
Confidence            765332222     12467899999999999999999999999   999999999999999999999999999998 679


Q ss_pred             cccccCCCCCCC
Q 035643          148 NNIFYGCGLSGY  159 (159)
Q Consensus       148 ~~~~~~~g~~~~  159 (159)
                      ++..+..|+||+
T Consensus       247 IN~~d~~G~TpL  258 (437)
T PHA02795        247 VNAVMSNGYTCL  258 (437)
T ss_pred             CCCcCCCCCCHH
Confidence            999999999974

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.92  E-value=2.7e-25  Score=160.52  Aligned_cols=142  Identities=18%  Similarity=0.241  Sum_probs=123.3

Q ss_pred             CccccCCCcc-ccccCCCCCHHHHHHHh--CChHHHHHHhhcCCccceecCCCCCcHHHHHHHhC----CHHHHHHHHhc
Q 035643            1 EILRRKPEQA-GELDSRKASPLHLAAAK--GYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRG----NVNVLKELVKV   73 (159)
Q Consensus         1 ~ll~~~~~~~-~~~~~~g~t~l~~a~~~--~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~----~~~~~~~l~~~   73 (159)
                      ++|+++|+++ +..|..|.||||+|+..  ++.++++.|++.|+++....+..|.||+|+|+..+    +.+++++|++.
T Consensus       128 ~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~  207 (494)
T PHA02989        128 RFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKK  207 (494)
T ss_pred             HHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhC
Confidence            4688999999 89999999999998865  58999999999999985436788999999998764    78999999985


Q ss_pred             Cchhh-------------------------------------hhhccCCCCchhhhhhcCChhHHHHHHhhcCCcccccc
Q 035643           74 RPQAA-------------------------------------LILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNS  116 (159)
Q Consensus        74 ~~~~~-------------------------------------~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  116 (159)
                      +....                                     +.++..|.||||+|+..++.+++++|++.|++   ++.
T Consensus       208 Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gad---in~  284 (494)
T PHA02989        208 GVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDD---IYN  284 (494)
T ss_pred             CCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCC---ccc
Confidence            54221                                     23456799999999999999999999999999   899


Q ss_pred             ccCCCCCHHHHHHHhCCcceeeeccCCCc
Q 035643          117 KDDNGSTILHLAVLEKQVEVFYMDFDRNN  145 (159)
Q Consensus       117 ~~~~~~tpl~~a~~~~~~~~~~~ll~~~~  145 (159)
                      +|..|.||||+|+..++.++++.|++.+.
T Consensus       285 ~d~~G~TpL~~A~~~~~~~iv~~LL~~~p  313 (494)
T PHA02989        285 VSKDGDTVLTYAIKHGNIDMLNRILQLKP  313 (494)
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Confidence            99999999999999999999999998753

>PHA02798 ankyrin-like protein; Provisional

Probab=99.92  E-value=4.2e-25  Score=159.37  Aligned_cols=139  Identities=22%  Similarity=0.346  Sum_probs=121.6

Q ss_pred             CccccCCCccccccCCCCCHHHHHHHh-----CChHHHHHHhhcCCccceecCCCCCcHHHHHHHhC---CHHHHHHHHh
Q 035643            1 EILRRKPEQAGELDSRKASPLHLAAAK-----GYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRG---NVNVLKELVK   72 (159)
Q Consensus         1 ~ll~~~~~~~~~~~~~g~t~l~~a~~~-----~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~---~~~~~~~l~~   72 (159)
                      |+|+++|+++|..|..|.||||.++.+     +..++++.|++.|+++ +.++..|.||||+|+..+   +.+++++|++
T Consensus        55 ~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Gadi-N~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~  133 (489)
T PHA02798         55 KLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADI-NKKNSDGETPLYCLLSNGYINNLEILLFMIE  133 (489)
T ss_pred             HHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCC-CCCCCCcCcHHHHHHHcCCcChHHHHHHHHH
Confidence            468899999999999999999998864     6789999999999998 689999999999999875   6899999999


Q ss_pred             cCchhhhhhccCCCCchhhhhhcCC---hhHHHHHHhhcCCcccccccc-CCCCCHHHHHHHh----CCcceeeeccCCC
Q 035643           73 VRPQAALILMERGVTILHACVNYNQ---LESLRLLVEIRNDHEFVNSKD-DNGSTILHLAVLE----KQVEVFYMDFDRN  144 (159)
Q Consensus        73 ~~~~~~~~~~~~~~t~l~~a~~~~~---~~~~~~Ll~~~~~~~~~~~~~-~~~~tpl~~a~~~----~~~~~~~~ll~~~  144 (159)
                      .+ ......+..|.||||+|+..+.   .+++++|++.|++   ++.++ ..|.||+|.++..    ++.+++++|+++|
T Consensus       134 ~G-advn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gad---in~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~G  209 (489)
T PHA02798        134 NG-ADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVD---INTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNG  209 (489)
T ss_pred             cC-CCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCC---cccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCC
Confidence            54 5566778899999999999987   8999999999999   77775 5689999998764    3788889988874

>PHA02741 hypothetical protein; Provisional

Probab=99.92  E-value=8.8e-25  Score=137.36  Aligned_cols=132  Identities=19%  Similarity=0.212  Sum_probs=113.3

Q ss_pred             ccccccCCCCCHHHHHHHhCChHHHHHHhhc------CCccceecCCCCCcHHHHHHHhCC----HHHHHHHHhcCchhh
Q 035643            9 QAGELDSRKASPLHLAAAKGYLDIVLKLVSV------NPEMCFARDIDGKNPLHIAAIRGN----VNVLKELVKVRPQAA   78 (159)
Q Consensus         9 ~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~------~~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~l~~~~~~~~   78 (159)
                      .++.+|..|.||||+|+..|+.++++.|+..      +.++ +.+|..|.||||+|+..++    .+++++|++.+.. .
T Consensus        13 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~i-n~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad-i   90 (169)
T PHA02741         13 MIAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAAL-NATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD-I   90 (169)
T ss_pred             HhhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhh-hccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC-C
Confidence            3567889999999999999999999998542      3454 6789999999999999998    5888999985544 4


Q ss_pred             hhhc-cCCCCchhhhhhcCChhHHHHHHh-hcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCc
Q 035643           79 LILM-ERGVTILHACVNYNQLESLRLLVE-IRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNN  145 (159)
Q Consensus        79 ~~~~-~~~~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~  145 (159)
                      ..++ ..|.||||+|+..++.+++++|+. .+.+   ++..|..|.||||+|+..+..+++++|++.+.
T Consensus        91 n~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~---~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~  156 (169)
T PHA02741         91 NAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGID---LHFCNADNKSPFELAIDNEDVAMMQILREIVA  156 (169)
T ss_pred             CCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCC---CCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
Confidence            4445 489999999999999999999997 4888   88899999999999999999999999988743

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.92  E-value=1.4e-25  Score=153.90  Aligned_cols=136  Identities=23%  Similarity=0.340  Sum_probs=114.4

Q ss_pred             CccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhh
Q 035643            1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALI   80 (159)
Q Consensus         1 ~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~   80 (159)
                      |+|+++|++||.......|||--||.-|+++++++|+++++++ ++.+..|.|+|++||.+|+.+++++|++.+ .+.+.
T Consensus       101 k~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~-~IanrhGhTcLmIa~ykGh~~I~qyLle~g-ADvn~  178 (615)
T KOG0508|consen  101 KLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADP-EIANRHGHTCLMIACYKGHVDIAQYLLEQG-ADVNA  178 (615)
T ss_pred             HHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCC-cccccCCCeeEEeeeccCchHHHHHHHHhC-CCcch
Confidence            4677888888888888888888888888888888888888888 688888888888888888888888888844 55566


Q ss_pred             hccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccC
Q 035643           81 LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFD  142 (159)
Q Consensus        81 ~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~  142 (159)
                      ++..|+|+||.|+..|+.+++++|+..|+.   +. .|.+|.|||..|...|..+++++|+.
T Consensus       179 ks~kGNTALH~caEsG~vdivq~Ll~~ga~---i~-~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  179 KSYKGNTALHDCAESGSVDIVQLLLKHGAK---ID-VDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             hcccCchHHHhhhhcccHHHHHHHHhCCce---ee-ecCCCCchHHHHhhhcchHHHHHHhc
Confidence            788888888888888888888888888877   43 57778889888888888888888885

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.92  E-value=4.4e-24  Score=138.30  Aligned_cols=127  Identities=20%  Similarity=0.192  Sum_probs=111.4

Q ss_pred             CccccCCCcccccc-CCCCCHHHHHHHh---CChHHHHHHhhcCCccceecCCCCCcHHHHHHH--hCCHHHHHHHHhcC
Q 035643            1 EILRRKPEQAGELD-SRKASPLHLAAAK---GYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI--RGNVNVLKELVKVR   74 (159)
Q Consensus         1 ~ll~~~~~~~~~~~-~~g~t~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~--~~~~~~~~~l~~~~   74 (159)
                      ++|++.|++++.++ ..|.||||+|+..   ++.++++.|++.++++ +.++..|.||+|+|+.  .++.+++++|++.+
T Consensus        70 ~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadi-n~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~g  148 (209)
T PHA02859         70 KFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSI-TEEDEDGKNLLHMYMCNFNVRINVIKLLIDSG  148 (209)
T ss_pred             HHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhccCCHHHHHHHHHcC
Confidence            46889999999997 5899999998764   4799999999999998 6899999999999886  46899999999954


Q ss_pred             chhhhhhccCCCCchhh-hhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhC
Q 035643           75 PQAALILMERGVTILHA-CVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEK  132 (159)
Q Consensus        75 ~~~~~~~~~~~~t~l~~-a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~  132 (159)
                       .....++..|.||||. ++..++.+++++|++.|++   ++.+|..|.||+++|...+
T Consensus       149 -adin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gad---i~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        149 -VSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGID---INETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             -CCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHhhhh
Confidence             5566778899999996 5667899999999999999   8999999999999999765

>PHA02795 ankyrin-like protein; Provisional

Probab=99.92  E-value=8.4e-25  Score=152.43  Aligned_cols=139  Identities=13%  Similarity=0.046  Sum_probs=121.7

Q ss_pred             CccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecC-----CCCCcHHHHHHHhCCHHHHHHHHhcCc
Q 035643            1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARD-----IDGKNPLHIAAIRGNVNVLKELVKVRP   75 (159)
Q Consensus         1 ~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~-----~~~~~~l~~a~~~~~~~~~~~l~~~~~   75 (159)
                      |+|+.+|++++..  ++.||||.|+..++.+++++|+++|++..+..+     ..+.+++|.|...+..+++++|++ .+
T Consensus       135 ~~LI~~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs-~G  211 (437)
T PHA02795        135 DFMVDHGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIP-YI  211 (437)
T ss_pred             HHHHHCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHh-Cc
Confidence            4789999999984  458999999999999999999999975433332     347789999999999999999999 45


Q ss_pred             hhhhhhccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCC--------cceeeeccCCCc
Q 035643           76 QAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQ--------VEVFYMDFDRNN  145 (159)
Q Consensus        76 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~--------~~~~~~ll~~~~  145 (159)
                      ...+.++..|.||||+|+..|+.+++++|++.|++   ++.+|..|.||||+|+..|.        .+++++|++++.
T Consensus       212 ADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAd---IN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~ga  286 (437)
T PHA02795        212 EDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGAN---VNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPL  286 (437)
T ss_pred             CCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCC
Confidence            56677889999999999999999999999999999   99999999999999999884        589999998854

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.91  E-value=3.6e-24  Score=154.84  Aligned_cols=154  Identities=25%  Similarity=0.292  Sum_probs=98.9

Q ss_pred             ccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCc----------------------------
Q 035643            2 ILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKN----------------------------   53 (159)
Q Consensus         2 ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~----------------------------   53 (159)
                      +|+++|++||..|..|.||||.||..++.|..+.|++.++++. ..+..|..                            
T Consensus       139 ~Ll~~~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~-K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~  217 (929)
T KOG0510|consen  139 LLLDYGADVNLEDENGFTPLHLAARKNKVEAKKELINKGADPC-KSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTH  217 (929)
T ss_pred             HHHHhcCCccccccCCCchhhHHHhcChHHHHHHHHhcCCCCC-cccCcCCchHHHHHHhcchhhhhhhhccccchhhcc
Confidence            3455556666666666666666665555554455555555542 34444444                            


Q ss_pred             ----------HHHHHHHhCCHHHHHHHHhcCchhh--------------hhhccCCCCchhhhhhcCChhHHHHHHhhcC
Q 035643           54 ----------PLHIAAIRGNVNVLKELVKVRPQAA--------------LILMERGVTILHACVNYNQLESLRLLVEIRN  109 (159)
Q Consensus        54 ----------~l~~a~~~~~~~~~~~l~~~~~~~~--------------~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~  109 (159)
                                |||.|+..|+.++++..++.+....              ...|++|.||||+|++.|..++++.|+..|+
T Consensus       218 in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga  297 (929)
T KOG0510|consen  218 INFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGA  297 (929)
T ss_pred             cccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCC
Confidence                      4444444444444444444222111              1246678888888888888888888888888


Q ss_pred             CccccccccCCCCCHHHHHHHhCCcceeeeccC-CCccCcccccCCCCCCC
Q 035643          110 DHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFD-RNNMDNNIFYGCGLSGY  159 (159)
Q Consensus       110 ~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~g~~~~  159 (159)
                      +   ++.++.++.||||.|+..|+.+.++-||+ .+....+..|.-|.||+
T Consensus       298 ~---I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpL  345 (929)
T KOG0510|consen  298 S---INSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPL  345 (929)
T ss_pred             c---ccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCch
Confidence            8   88888888888888888888888888877 55577777777777764

>PHA02917 ankyrin-like protein; Provisional

Probab=99.90  E-value=9e-24  Score=155.85  Aligned_cols=152  Identities=15%  Similarity=0.168  Sum_probs=109.5

Q ss_pred             cccCCCccccccCCCCCHHHHHHHh---CChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHH----HHHHHHhc--
Q 035643            3 LRRKPEQAGELDSRKASPLHLAAAK---GYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVN----VLKELVKV--   73 (159)
Q Consensus         3 l~~~~~~~~~~~~~g~t~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~----~~~~l~~~--   73 (159)
                      |+..|..++.+|.+|.||||+|+..   |+.++++.|++.|+++ +.++..|.||||+|+..|+.+    +++.|++.  
T Consensus        18 l~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v-~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~   96 (661)
T PHA02917         18 MLRDRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNP-LHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATG   96 (661)
T ss_pred             HHhccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCc-cccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccC
Confidence            4457777888889999999987555   7799999999998888 578888899999888776532    23344331  


Q ss_pred             ----------------------------CchhhhhhccCCCCchhhh--hhcCChhHHHHHHhhcCCccccccccC---C
Q 035643           74 ----------------------------RPQAALILMERGVTILHAC--VNYNQLESLRLLVEIRNDHEFVNSKDD---N  120 (159)
Q Consensus        74 ----------------------------~~~~~~~~~~~~~t~l~~a--~~~~~~~~~~~Ll~~~~~~~~~~~~~~---~  120 (159)
                                                  .+...+.++..|.||||.+  +..++.+++++|++.|++   ++.+|.   .
T Consensus        97 ~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~---vn~~d~~~~~  173 (661)
T PHA02917         97 YSNINDFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCS---VLYEDEDDEY  173 (661)
T ss_pred             CCCCCCcchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCC---cccccccccc
Confidence                                        2233334566788888854  346788888888888888   554432   2


Q ss_pred             C-----------CCHHHHHHH-----------hCCcceeeeccCCCccCcccccCCCCCCC
Q 035643          121 G-----------STILHLAVL-----------EKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus       121 ~-----------~tpl~~a~~-----------~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      |           .||||+|+.           .++.+++++|++. |++++..+..|.||+
T Consensus       174 g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~-Gadvn~~d~~G~TpL  233 (661)
T PHA02917        174 GYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINH-GIKPSSIDKNYCTAL  233 (661)
T ss_pred             ccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHC-CCCcccCCCCCCcHH
Confidence            3           488888875           3467888888888 568888888888874

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.90  E-value=2.2e-24  Score=135.19  Aligned_cols=121  Identities=26%  Similarity=0.249  Sum_probs=61.3

Q ss_pred             ccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCc
Q 035643            9 QAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTI   88 (159)
Q Consensus         9 ~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~   88 (159)
                      .+|..|+.|+|||.||++.|++++|++|++.|+++ ..-.+...++|..|++.|..+++++|+. +..+.+..|++|-||
T Consensus       152 ~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp-~~lgk~resALsLAt~ggytdiV~lLL~-r~vdVNvyDwNGgTp  229 (296)
T KOG0502|consen  152 KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADP-DALGKYRESALSLATRGGYTDIVELLLT-REVDVNVYDWNGGTP  229 (296)
T ss_pred             cccCccccCchHhHHHHhcCchHHHHHHHHcCCCh-hhhhhhhhhhHhHHhcCChHHHHHHHHh-cCCCcceeccCCCce
Confidence            34555555555555555555555555555555544 3344444455555555555555555555 233333444555555


Q ss_pred             hhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCc
Q 035643           89 LHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQV  134 (159)
Q Consensus        89 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~  134 (159)
                      |-+|++.++.+|++.|+..|++   +...+..|.+++..|+..|..
T Consensus       230 LlyAvrgnhvkcve~Ll~sGAd---~t~e~dsGy~~mdlAValGyr  272 (296)
T KOG0502|consen  230 LLYAVRGNHVKCVESLLNSGAD---VTQEDDSGYWIMDLAVALGYR  272 (296)
T ss_pred             eeeeecCChHHHHHHHHhcCCC---cccccccCCcHHHHHHHhhhH
Confidence            5555555555555555555555   444555555555555555544

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.90  E-value=4.4e-24  Score=132.42  Aligned_cols=135  Identities=18%  Similarity=0.088  Sum_probs=107.3

Q ss_pred             CCccccccCCCCCHHHHHHHhCChHHHHHHhh----cCCccceecCCCCCcHHHHHHHhCCHH---HHHHHHhcCchhhh
Q 035643            7 PEQAGELDSRKASPLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVN---VLKELVKVRPQAAL   79 (159)
Q Consensus         7 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~----~~~~~~~~~~~~~~~~l~~a~~~~~~~---~~~~l~~~~~~~~~   79 (159)
                      -...+..|.+|.||||+|+..|+...+.....    .........+..|.||||+|+..++.+   ++++|++.+. ...
T Consensus         7 ~~~~~~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~ga-din   85 (154)
T PHA02736          7 IIFASEPDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGA-DIN   85 (154)
T ss_pred             hhHHHhcCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCC-Ccc
Confidence            34567889999999999999998432222111    111122356889999999999999864   6788888554 444


Q ss_pred             hhc-cCCCCchhhhhhcCChhHHHHHHhh-cCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCc
Q 035643           80 ILM-ERGVTILHACVNYNQLESLRLLVEI-RNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNN  145 (159)
Q Consensus        80 ~~~-~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~  145 (159)
                      .++ ..|.||||+|+..++.+++++|+.. +.+   ++.+|..|.||||+|+..+..+++++|+..++
T Consensus        86 ~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d---~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga  150 (154)
T PHA02736         86 GKERVFGNTPLHIAVYTQNYELATWLCNQPGVN---MEILNYAFKTPYYVACERHDAKMMNILRAKGA  150 (154)
T ss_pred             ccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC---CccccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            555 5899999999999999999999974 788   88999999999999999999999999998854

>PHA02917 ankyrin-like protein; Provisional

Probab=99.89  E-value=4.5e-23  Score=152.19  Aligned_cols=138  Identities=14%  Similarity=0.134  Sum_probs=113.4

Q ss_pred             CccccCCCccccccCCCCCHHHHHHHhC-----------------------------------ChHHHHHHhhcCCccce
Q 035643            1 EILRRKPEQAGELDSRKASPLHLAAAKG-----------------------------------YLDIVLKLVSVNPEMCF   45 (159)
Q Consensus         1 ~ll~~~~~~~~~~~~~g~t~l~~a~~~~-----------------------------------~~~~~~~ll~~~~~~~~   45 (159)
                      |+|+..|++++..+..|+||||+|+..|                                   +.+++++|++.|+++ +
T Consensus        52 ~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~Gadi-n  130 (661)
T PHA02917         52 KLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEHGFDL-S  130 (661)
T ss_pred             HHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHcCCCC-C
Confidence            4688999999999999999999888644                                   456777788888888 6


Q ss_pred             ecCCCCCcHHHHHH--HhCCHHHHHHHHhcCchhhh--hhccCC-----------CCchhhhhh-----------cCChh
Q 035643           46 ARDIDGKNPLHIAA--IRGNVNVLKELVKVRPQAAL--ILMERG-----------VTILHACVN-----------YNQLE   99 (159)
Q Consensus        46 ~~~~~~~~~l~~a~--~~~~~~~~~~l~~~~~~~~~--~~~~~~-----------~t~l~~a~~-----------~~~~~   99 (159)
                      .+|..|+||||+++  ..++.+++++|++.+.....  ..+..|           .||||+|+.           .++.+
T Consensus       131 ~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~e  210 (661)
T PHA02917        131 VKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPE  210 (661)
T ss_pred             ccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHH
Confidence            88999999999654  47899999999996654431  112223           599999986           45789


Q ss_pred             HHHHHHhhcCCccccccccCCCCCHHHHHHHhCCc--ceeeeccC
Q 035643          100 SLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQV--EVFYMDFD  142 (159)
Q Consensus       100 ~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~--~~~~~ll~  142 (159)
                      ++++|++.|++   ++.+|.+|.||||+|+..|+.  +++++|++
T Consensus       211 iv~~Li~~Gad---vn~~d~~G~TpLh~A~~~g~~~~eivk~Li~  252 (661)
T PHA02917        211 VVKCLINHGIK---PSSIDKNYCTALQYYIKSSHIDIDIVKLLMK  252 (661)
T ss_pred             HHHHHHHCCCC---cccCCCCCCcHHHHHHHcCCCcHHHHHHHHh
Confidence            99999999999   999999999999999999986  69999875

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.89  E-value=1.4e-23  Score=144.14  Aligned_cols=139  Identities=24%  Similarity=0.295  Sum_probs=123.9

Q ss_pred             cCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhh
Q 035643           14 DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACV   93 (159)
Q Consensus        14 ~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~   93 (159)
                      ..+|-+||..|+..|++++|+.|+.+++++ +.......|||-.||..|+.+++++|++ .+.++...++.|.|.||+||
T Consensus        81 ~IegappLWaAsaAGHl~vVk~L~~~ga~V-N~tT~TNStPLraACfDG~leivKyLvE-~gad~~IanrhGhTcLmIa~  158 (615)
T KOG0508|consen   81 TIEGAPPLWAASAAGHLEVVKLLLRRGASV-NDTTRTNSTPLRAACFDGHLEIVKYLVE-HGADPEIANRHGHTCLMIAC  158 (615)
T ss_pred             ccCCCchhhHHhccCcHHHHHHHHHhcCcc-ccccccCCccHHHHHhcchhHHHHHHHH-cCCCCcccccCCCeeEEeee
Confidence            467899999999999999999999999888 4566666799999999999999999999 66777788999999999999


Q ss_pred             hcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643           94 NYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus        94 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      ..|+.+++++|++.|++   ++.++..|.|+||.|++.|+.+++++|+.++...  ..++.|.||+
T Consensus       159 ykGh~~I~qyLle~gAD---vn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i--~~d~~GmtPL  219 (615)
T KOG0508|consen  159 YKGHVDIAQYLLEQGAD---VNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKI--DVDGHGMTPL  219 (615)
T ss_pred             ccCchHHHHHHHHhCCC---cchhcccCchHHHhhhhcccHHHHHHHHhCCcee--eecCCCCchH
Confidence            99999999999999999   9999999999999999999999999999996522  2345688774

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.89  E-value=1.5e-23  Score=158.31  Aligned_cols=151  Identities=28%  Similarity=0.366  Sum_probs=79.8

Q ss_pred             cccCCCccccccCCCCCHHHHHHHhC-ChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcC-------
Q 035643            3 LRRKPEQAGELDSRKASPLHLAAAKG-YLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVR-------   74 (159)
Q Consensus         3 l~~~~~~~~~~~~~g~t~l~~a~~~~-~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~-------   74 (159)
                      +.++|++++.++..|.||+|.|+..| ..+....+++.+.++ +.....|.||||.|+..|+.+++..+++..       
T Consensus       426 ~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~-n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~  504 (1143)
T KOG4177|consen  426 LLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADP-NAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDA  504 (1143)
T ss_pred             EeccCCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCc-chhccccCcchhhhhccCCchHHHHhhhcCCccCccc
Confidence            34444445555544555555555444 444444444444444 344444444555444444444444444411       


Q ss_pred             -------------------------chhhhhhccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHH
Q 035643           75 -------------------------PQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV  129 (159)
Q Consensus        75 -------------------------~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~  129 (159)
                                               +.....++..+.||||.|+.+|+.++|++|++.|++   ++.+++.|+||||.|+
T Consensus       505 ~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAd---v~ak~~~G~TPLH~Aa  581 (1143)
T KOG4177|consen  505 KKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGAD---VNAKDKLGYTPLHQAA  581 (1143)
T ss_pred             hhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCcc---ccccCCCCCChhhHHH
Confidence                                     111122344455666666666666666666666666   6666666666666666


Q ss_pred             HhCCcceeeeccCCCccCcccccCCCCCC
Q 035643          130 LEKQVEVFYMDFDRNNMDNNIFYGCGLSG  158 (159)
Q Consensus       130 ~~~~~~~~~~ll~~~~~~~~~~~~~g~~~  158 (159)
                      ..|..+|+++|+++ |++++..+..|.||
T Consensus       582 ~~G~~~i~~LLlk~-GA~vna~d~~g~Tp  609 (1143)
T KOG4177|consen  582 QQGHNDIAELLLKH-GASVNAADLDGFTP  609 (1143)
T ss_pred             HcChHHHHHHHHHc-CCCCCcccccCcch
Confidence            66666666666666 44555566666655

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.89  E-value=1.3e-23  Score=131.76  Aligned_cols=149  Identities=25%  Similarity=0.163  Sum_probs=130.6

Q ss_pred             ccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhh
Q 035643            2 ILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALIL   81 (159)
Q Consensus         2 ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~   81 (159)
                      +.+.+|+..|..+-.+++|+.+++...+++.+..+.+..   .+..|+.|.|||.+|++.|+..++++|++.+ ......
T Consensus       114 ttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n~---VN~~De~GfTpLiWAaa~G~i~vV~fLL~~G-Adp~~l  189 (296)
T KOG0502|consen  114 TTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNNK---VNACDEFGFTPLIWAAAKGHIPVVQFLLNSG-ADPDAL  189 (296)
T ss_pred             eeecccccCCccccccCChhhHHHHHHHHHHHHHHhhcc---ccCccccCchHhHHHHhcCchHHHHHHHHcC-CChhhh
Confidence            457789999999999999999999988888876554433   3678999999999999999999999999955 444455


Q ss_pred             ccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCC
Q 035643           82 MERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSG  158 (159)
Q Consensus        82 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~  158 (159)
                      .+...++|.+|+..|..+++++|+.++.+   ++.+|.+|.|||-+|++.++.+|++.|+.+ |++++..+.+|.++
T Consensus       190 gk~resALsLAt~ggytdiV~lLL~r~vd---VNvyDwNGgTpLlyAvrgnhvkcve~Ll~s-GAd~t~e~dsGy~~  262 (296)
T KOG0502|consen  190 GKYRESALSLATRGGYTDIVELLLTREVD---VNVYDWNGGTPLLYAVRGNHVKCVESLLNS-GADVTQEDDSGYWI  262 (296)
T ss_pred             hhhhhhhHhHHhcCChHHHHHHHHhcCCC---cceeccCCCceeeeeecCChHHHHHHHHhc-CCCcccccccCCcH
Confidence            56678999999999999999999999999   999999999999999999999999999999 66888888888654

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.88  E-value=4.6e-22  Score=133.79  Aligned_cols=129  Identities=19%  Similarity=0.163  Sum_probs=108.2

Q ss_pred             ccccCCCCCHH-HHHHHhCChHHHHHHhhcCCccceec----CCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCC
Q 035643           11 GELDSRKASPL-HLAAAKGYLDIVLKLVSVNPEMCFAR----DIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERG   85 (159)
Q Consensus        11 ~~~~~~g~t~l-~~a~~~~~~~~~~~ll~~~~~~~~~~----~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~   85 (159)
                      -.+|..|.+++ |.|+..|+.++++.|+++|+++ +.+    +..|.||||+|+..++.+++++|++.+.......+..|
T Consensus        26 ~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdi-N~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g  104 (300)
T PHA02884         26 KKKNKICIANILYSSIKFHYTDIIDAILKLGADP-EAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAK  104 (300)
T ss_pred             hccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCc-cccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCC
Confidence            45677777765 5566668999999999999988 455    45899999999999999999999996554443345579


Q ss_pred             CCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCC
Q 035643           86 VTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDR  143 (159)
Q Consensus        86 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~  143 (159)
                      .||||.|+..++.+++++|++.|++   ++.+|..|.||+|+|+..+..+++.++.+.
T Consensus       105 ~TpLh~Aa~~~~~eivklLL~~GAd---in~kd~~G~TpL~~A~~~~~~~~~~~~~~~  159 (300)
T PHA02884        105 ITPLYISVLHGCLKCLEILLSYGAD---INIQTNDMVTPIELALMICNNFLAFMICDN  159 (300)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHhCChhHHHHhcCC
Confidence            9999999999999999999999999   899999999999999998887777555543

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.88  E-value=1.1e-22  Score=123.14  Aligned_cols=136  Identities=25%  Similarity=0.290  Sum_probs=118.5

Q ss_pred             HHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhcCChh
Q 035643           20 PLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLE   99 (159)
Q Consensus        20 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~   99 (159)
                      .+.+|+..+.+..|+.||+..++..+.+|.+|+||||-|+..|+.+|++.|+. .+.....+...|+||||.||..++.+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~-~gAn~~a~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLL-SGANKEAKTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHH-ccCCcccccccCccchhhhhcccchh
Confidence            46789999999999999999999889999999999999999999999999999 44556677888999999999999999


Q ss_pred             HHHHHHhhcCCccccccccCCCCCHHHHHHHhC-CcceeeeccCCCccCcccccCCCCCCC
Q 035643          100 SLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEK-QVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus       100 ~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~-~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      ++..|++.|++   ++.......||||+|+... ...-+.+|+-...+.+..++..+.|+|
T Consensus       145 va~~LLqhgaD---VnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~  202 (228)
T KOG0512|consen  145 VAGRLLQHGAD---VNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAF  202 (228)
T ss_pred             HHHHHHhccCc---ccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHH
Confidence            99999999999   9999999999999999854 455556666666778877777776654

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.88  E-value=4.4e-22  Score=124.67  Aligned_cols=117  Identities=16%  Similarity=0.103  Sum_probs=101.7

Q ss_pred             ccccCCCccccccCCCCCHHHHHHHhCChHH---HHHHhhcCCccceecC-CCCCcHHHHHHHhCCHHHHHHHHhcCchh
Q 035643            2 ILRRKPEQAGELDSRKASPLHLAAAKGYLDI---VLKLVSVNPEMCFARD-IDGKNPLHIAAIRGNVNVLKELVKVRPQA   77 (159)
Q Consensus         2 ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~---~~~ll~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~l~~~~~~~   77 (159)
                      +|...|++++..|..|+||||+|+..|+.+.   +++|++.++++ +.++ ..|.||||+|+..++.+++++|+......
T Consensus        42 ~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi-n~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad  120 (166)
T PHA02743         42 FISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADI-NARELGTGNTLLHIAASTKNYELAEWLCRQLGVN  120 (166)
T ss_pred             HHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCC-CCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCC
Confidence            4567899999999999999999999987654   78999999988 5677 58999999999999999999999644555


Q ss_pred             hhhhccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCC
Q 035643           78 ALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGS  122 (159)
Q Consensus        78 ~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~  122 (159)
                      ....+..|.||||+|+..++.+++++|++.+++   ++.++..|.
T Consensus       121 ~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~---~~~~~~~~~  162 (166)
T PHA02743        121 LGAINYQHETAYHIAYKMRDRRMMEILRANGAV---CDDPLSIGL  162 (166)
T ss_pred             ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcccCCc
Confidence            666788999999999999999999999999998   777776654

>PHA02730 ankyrin-like protein; Provisional

Probab=99.88  E-value=2.8e-22  Score=145.97  Aligned_cols=141  Identities=14%  Similarity=0.125  Sum_probs=119.0

Q ss_pred             CccccCCCccccccCCCCCHHHHHHHhCC----hHHHHHHhhcCCc-cceecCCCCCcHHHH---HHHhC---------C
Q 035643            1 EILRRKPEQAGELDSRKASPLHLAAAKGY----LDIVLKLVSVNPE-MCFARDIDGKNPLHI---AAIRG---------N   63 (159)
Q Consensus         1 ~ll~~~~~~~~~~~~~g~t~l~~a~~~~~----~~~~~~ll~~~~~-~~~~~~~~~~~~l~~---a~~~~---------~   63 (159)
                      |+|+.+|+++|.. ..|.||||+|+..+.    .+++++|+++|++ ..+.++..|.||||.   |...+         .
T Consensus       363 elLIs~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~  441 (672)
T PHA02730        363 RCMLDNGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETIL  441 (672)
T ss_pred             HHHHHCCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhH
Confidence            4789999999985 789999999998874    8999999999873 236788999999985   32222         2


Q ss_pred             HHHHHHHHhcCchhhhhhccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccC-CCCCHHHHHHHh--CCcceeeec
Q 035643           64 VNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDD-NGSTILHLAVLE--KQVEVFYMD  140 (159)
Q Consensus        64 ~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~-~~~tpl~~a~~~--~~~~~~~~l  140 (159)
                      .+++++|+. .+...+.++..|.||||+|+..++.+++++|++.|++   ++.++. .|.||+|.|+..  ++.+++++|
T Consensus       442 ~~ivk~LIs-~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAd---IN~~d~~~g~TaL~~Aa~~~~~~~eIv~~L  517 (672)
T PHA02730        442 IDVFDILSK-YMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGAS---VNTTSRSIINTAIQKSSYRRENKTKLVDLL  517 (672)
T ss_pred             HHHHHHHHh-cccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCC---CCCCCCcCCcCHHHHHHHhhcCcHHHHHHH
Confidence            356899999 5566677899999999999999999999999999999   899996 599999999874  689999999


Q ss_pred             cCCCcc
Q 035643          141 FDRNNM  146 (159)
Q Consensus       141 l~~~~~  146 (159)
                      ++++..
T Consensus       518 Ls~ga~  523 (672)
T PHA02730        518 LSYHPT  523 (672)
T ss_pred             HHcCCC
Confidence            999653

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.88  E-value=2.3e-22  Score=152.06  Aligned_cols=151  Identities=26%  Similarity=0.251  Sum_probs=122.3

Q ss_pred             cccCCCccccccCCCCCHHHHHHHhCChHHHHHHhh---------------------------------cCCccceecCC
Q 035643            3 LRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVS---------------------------------VNPEMCFARDI   49 (159)
Q Consensus         3 l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~---------------------------------~~~~~~~~~~~   49 (159)
                      +.+.|.+++.....|+||||.|+..|+.+++..+++                                 ++.+. +.++.
T Consensus       460 l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v-~~~~~  538 (1143)
T KOG4177|consen  460 LLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANV-DLRTG  538 (1143)
T ss_pred             HhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCce-ehhcc
Confidence            455666777777777777777777666666666655                                 34433 46777


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHH
Q 035643           50 DGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV  129 (159)
Q Consensus        50 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~  129 (159)
                      .+.||||+|+.+|+.+++++|++ .+.+...+++.|+||||.|+..|+.+++.+|++.|++   ++..|.+|.|||++|+
T Consensus       539 r~~TpLh~A~~~g~v~~VkfLLe-~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~---vna~d~~g~TpL~iA~  614 (1143)
T KOG4177|consen  539 RGYTPLHVAVHYGNVDLVKFLLE-HGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGAS---VNAADLDGFTPLHIAV  614 (1143)
T ss_pred             cccchHHHHHhcCCchHHHHhhh-CCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCC---CCcccccCcchhHHHH
Confidence            88899999999999999999999 5566666779999999999999999999999999999   9999999999999999


Q ss_pred             HhCCcceeeeccCCCcc----CcccccCCCCCC
Q 035643          130 LEKQVEVFYMDFDRNNM----DNNIFYGCGLSG  158 (159)
Q Consensus       130 ~~~~~~~~~~ll~~~~~----~~~~~~~~g~~~  158 (159)
                      ..|..+++++++..+..    +....+..|.+|
T Consensus       615 ~lg~~~~~k~l~~~~~~~~~~~~~~e~~~g~~p  647 (1143)
T KOG4177|consen  615 RLGYLSVVKLLKVVTATPAATDPVKENRKGAVP  647 (1143)
T ss_pred             HhcccchhhHHHhccCccccccchhhhhcccCh
Confidence            99999999999988554    244555566554

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.86  E-value=1e-21  Score=149.11  Aligned_cols=139  Identities=19%  Similarity=0.209  Sum_probs=123.4

Q ss_pred             ccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhh
Q 035643           13 LDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHAC   92 (159)
Q Consensus        13 ~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a   92 (159)
                      .+.++.++|+.|+..|+.++++.|++.+.++ +..|..|.||||+|+..|+.++++.|++. +...+.+|.+|.||||.|
T Consensus       521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~-n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~-gadin~~d~~G~TpL~~A  598 (823)
T PLN03192        521 DDPNMASNLLTVASTGNAALLEELLKAKLDP-DIGDSKGRTPLHIAASKGYEDCVLVLLKH-ACNVHIRDANGNTALWNA  598 (823)
T ss_pred             CCccchhHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcChHHHHHHHHhc-CCCCCCcCCCCCCHHHHH
Confidence            3445779999999999999999999999998 68999999999999999999999999994 456667788999999999


Q ss_pred             hhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643           93 VNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus        93 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      +..++.+++++|++.++.   .  ....+.++||.|+..|+.+++++|++. +.+++..+..|+||+
T Consensus       599 ~~~g~~~iv~~L~~~~~~---~--~~~~~~~~L~~Aa~~g~~~~v~~Ll~~-Gadin~~d~~G~TpL  659 (823)
T PLN03192        599 ISAKHHKIFRILYHFASI---S--DPHAAGDLLCTAAKRNDLTAMKELLKQ-GLNVDSEDHQGATAL  659 (823)
T ss_pred             HHhCCHHHHHHHHhcCcc---c--CcccCchHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCCCCCHH
Confidence            999999999999987655   2  234577999999999999999999998 668899999999984

>PHA02730 ankyrin-like protein; Provisional

Probab=99.85  E-value=4.1e-21  Score=140.00  Aligned_cols=100  Identities=19%  Similarity=0.231  Sum_probs=56.0

Q ss_pred             cCCCccc-cccCCCCCHHHHHHHhC---ChHHHHHHhhcCCccceecCCCCCcHHHHHHHhC--CHHHHHHHHhcCc-hh
Q 035643            5 RKPEQAG-ELDSRKASPLHLAAAKG---YLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRG--NVNVLKELVKVRP-QA   77 (159)
Q Consensus         5 ~~~~~~~-~~~~~g~t~l~~a~~~~---~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~l~~~~~-~~   77 (159)
                      +.-++++ .+|..|.||||+|+..+   +.++++.|+++|+++ +.+|..|.||||+|+..+  +.+++++|++.+. ..
T Consensus        28 ~~~~~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdi-n~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~  106 (672)
T PHA02730         28 ETCHNLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVER-LCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNAS  106 (672)
T ss_pred             HHhcchhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCC-cccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCC
Confidence            3334455 66666777777777665   367777777777766 466667777777766654  5667777766432 11


Q ss_pred             hhhhccCCCCchhhhhh--cCChhHHHHHH
Q 035643           78 ALILMERGVTILHACVN--YNQLESLRLLV  105 (159)
Q Consensus        78 ~~~~~~~~~t~l~~a~~--~~~~~~~~~Ll  105 (159)
                      ....+..+.+|++.++.  .++.+++++|+
T Consensus       107 ~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li  136 (672)
T PHA02730        107 NELTSNINDFDLYSYMSSDNIDLRLLKYLI  136 (672)
T ss_pred             cccccccCCchHHHHHHhcCCcHHHHHHHH
Confidence            12233334444444444  34444444444

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.85  E-value=5.6e-21  Score=124.73  Aligned_cols=122  Identities=27%  Similarity=0.324  Sum_probs=110.2

Q ss_pred             cccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhc
Q 035643            3 LRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILM   82 (159)
Q Consensus         3 l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~   82 (159)
                      |-+..-+.|.-|..|++||||||+.|+..+++.|++.|+.+ +..+...-+|||.|+..|+.++++.|++ ...+.+..+
T Consensus        20 ld~tehdln~gddhgfsplhwaakegh~aivemll~rgarv-n~tnmgddtplhlaaahghrdivqkll~-~kadvnavn   97 (448)
T KOG0195|consen   20 LDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARV-NSTNMGDDTPLHLAAAHGHRDIVQKLLS-RKADVNAVN   97 (448)
T ss_pred             ecCcccccccccccCcchhhhhhhcccHHHHHHHHhccccc-ccccCCCCcchhhhhhcccHHHHHHHHH-Hhcccchhh
Confidence            44556678899999999999999999999999999999987 5778777899999999999999999999 556666778


Q ss_pred             cCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHH
Q 035643           83 ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV  129 (159)
Q Consensus        83 ~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~  129 (159)
                      ..|.|||||||..|...+.+-|+..|+-   ++..|..|.||+..|.
T Consensus        98 ehgntplhyacfwgydqiaedli~~ga~---v~icnk~g~tpldkak  141 (448)
T KOG0195|consen   98 EHGNTPLHYACFWGYDQIAEDLISCGAA---VNICNKKGMTPLDKAK  141 (448)
T ss_pred             ccCCCchhhhhhhcHHHHHHHHHhccce---eeecccCCCCchhhhc
Confidence            8899999999999999999999999999   9999999999998774

>PHA02741 hypothetical protein; Provisional

Probab=99.84  E-value=9.5e-21  Score=119.07  Aligned_cols=111  Identities=20%  Similarity=0.274  Sum_probs=96.9

Q ss_pred             ecCCCCCcHHHHHHHhCCHHHHHHHHhcC-----chhhhhhccCCCCchhhhhhcCC----hhHHHHHHhhcCCcccccc
Q 035643           46 ARDIDGKNPLHIAAIRGNVNVLKELVKVR-----PQAALILMERGVTILHACVNYNQ----LESLRLLVEIRNDHEFVNS  116 (159)
Q Consensus        46 ~~~~~~~~~l~~a~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~t~l~~a~~~~~----~~~~~~Ll~~~~~~~~~~~  116 (159)
                      .++..|.|+||+|++.|+.++++.|+...     +.....++..|.||||+|+..++    .+++++|++.|++   ++.
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad---in~   92 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD---INA   92 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC---CCC
Confidence            56778999999999999999999886421     34566778889999999999998    4789999999999   888


Q ss_pred             ccC-CCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643          117 KDD-NGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus       117 ~~~-~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      ++. .|.||||+|+..++.+++++|++..+.+++..+..|+||+
T Consensus        93 ~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL  136 (169)
T PHA02741         93 QEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPF  136 (169)
T ss_pred             CCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHH
Confidence            885 8999999999999999999999865778999999999984

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.84  E-value=6.6e-20  Score=109.50  Aligned_cols=125  Identities=34%  Similarity=0.509  Sum_probs=110.8

Q ss_pred             cccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhh
Q 035643           12 ELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHA   91 (159)
Q Consensus        12 ~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~   91 (159)
                      .+|.+|.||||.|+..++.+++++|++.+.+. ...+..|.+|+|+|+..+..+++++++..+. .....+..+.+|+|+
T Consensus         2 ~~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~-~~~~~~~~~~~~l~~   79 (126)
T cd00204           2 ARDEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGA-DVNARDKDGNTPLHL   79 (126)
T ss_pred             CcCcCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CccccCCCCCCHHHH
Confidence            45678999999999999999999999999876 5788899999999999999999999999553 344556788999999


Q ss_pred             hhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeecc
Q 035643           92 CVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDF  141 (159)
Q Consensus        92 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll  141 (159)
                      |+..++.+++++|++.+.+   +...+..+.||++.|...++.+++++|+
T Consensus        80 a~~~~~~~~~~~L~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          80 AARNGNLDVVKLLLKHGAD---VNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHcCcHHHHHHHHHcCCC---CcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            9999999999999998877   7788899999999999999888887764

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.84  E-value=9.1e-21  Score=127.56  Aligned_cols=132  Identities=12%  Similarity=0.072  Sum_probs=108.1

Q ss_pred             CccccCCCcccccc----CCCCCHHHHHHHhCChHHHHHHhhcCCccceec-CCCCCcHHHHHHHhCCHHHHHHHHhcCc
Q 035643            1 EILRRKPEQAGELD----SRKASPLHLAAAKGYLDIVLKLVSVNPEMCFAR-DIDGKNPLHIAAIRGNVNVLKELVKVRP   75 (159)
Q Consensus         1 ~ll~~~~~~~~~~~----~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~~~~~~l~~a~~~~~~~~~~~l~~~~~   75 (159)
                      ++|+++|++++.++    ..|.||||+|+..++.+++++|+++|+++ +.+ +..|.||||+|+..++.+++++|+.. +
T Consensus        50 k~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADV-N~~~~~~g~TpLh~Aa~~~~~eivklLL~~-G  127 (300)
T PHA02884         50 DAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADV-NRYAEEAKITPLYISVLHGCLKCLEILLSY-G  127 (300)
T ss_pred             HHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-CcccCCCCCCHHHHHHHcCCHHHHHHHHHC-C
Confidence            46889999999974    58999999999999999999999999998 454 56799999999999999999999994 4


Q ss_pred             hhhhhhccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCc
Q 035643           76 QAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNN  145 (159)
Q Consensus        76 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~  145 (159)
                      .....++..|.||||+|+..+...++..+..  .      ..+..+.+|.+++.   ..+++++|+++..
T Consensus       128 Adin~kd~~G~TpL~~A~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~---n~ei~~~Lish~v  186 (300)
T PHA02884        128 ADINIQTNDMVTPIELALMICNNFLAFMICD--N------EISNFYKHPKKILI---NFDILKILVSHFI  186 (300)
T ss_pred             CCCCCCCCCCCCHHHHHHHhCChhHHHHhcC--C------cccccccChhhhhc---cHHHHHHHHHHHH
Confidence            5566678889999999999888887755543  1      24556678887653   5677787777644

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.83  E-value=9.4e-21  Score=142.82  Aligned_cols=148  Identities=18%  Similarity=0.126  Sum_probs=116.1

Q ss_pred             cccC--CCccccccCCCCCHHH-HHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhC---CHHHHHHHHhcCch
Q 035643            3 LRRK--PEQAGELDSRKASPLH-LAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRG---NVNVLKELVKVRPQ   76 (159)
Q Consensus         3 l~~~--~~~~~~~~~~g~t~l~-~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~---~~~~~~~l~~~~~~   76 (159)
                      +++.  +.++|..|..|.|||| .|+.+++.++++.|++.+.     .+..|.||||.|+..+   ...++..+......
T Consensus        36 lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~  110 (743)
T TIGR00870        36 DLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC-----RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRK  110 (743)
T ss_pred             HhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHHHHHhccHHHHHHHHHHHhhcccc
Confidence            4555  8899999999999999 8888889999999998875     5667899999998732   22334444432211


Q ss_pred             h---------hhhhccCCCCchhhhhhcCChhHHHHHHhhcCCcccccccc--------------CCCCCHHHHHHHhCC
Q 035643           77 A---------ALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKD--------------DNGSTILHLAVLEKQ  133 (159)
Q Consensus        77 ~---------~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~--------------~~~~tpl~~a~~~~~  133 (159)
                      .         .......|.||||+|+..++.+++++|++.|++   ++.++              ..|.||||.|+..++
T Consensus       111 ~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAd---v~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~  187 (743)
T TIGR00870       111 SGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGAS---VPARACGDFFVKSQGVDSFYHGESPLNAAACLGS  187 (743)
T ss_pred             cCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCC---CCcCcCCchhhcCCCCCcccccccHHHHHHHhCC
Confidence            0         011224689999999999999999999999998   55432              358999999999999


Q ss_pred             cceeeeccCCCccCcccccCCCCCCC
Q 035643          134 VEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus       134 ~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      .+++++|++. +.+++..+..|+|++
T Consensus       188 ~~iv~lLl~~-gadin~~d~~g~T~L  212 (743)
T TIGR00870       188 PSIVALLSED-PADILTADSLGNTLL  212 (743)
T ss_pred             HHHHHHHhcC-CcchhhHhhhhhHHH
Confidence            9999999998 458888888888863

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.82  E-value=1.1e-20  Score=131.39  Aligned_cols=152  Identities=26%  Similarity=0.251  Sum_probs=130.5

Q ss_pred             cccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhh----
Q 035643            3 LRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAA----   78 (159)
Q Consensus         3 l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~----   78 (159)
                      |+..|+.++..+.+|.|+||-+|.-.+.++|+++++.++++ +..|..++||+|.|+.-|+..++.++++.+....    
T Consensus        59 ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~V-n~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNs  137 (527)
T KOG0505|consen   59 LLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANV-NAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNS  137 (527)
T ss_pred             HhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCc-cccccccCCcchhhcccccHHHHHHHHHhhhhhhhccC
Confidence            67788999999999999999999999999999999999998 6899999999999999999999999987222111    


Q ss_pred             ------------------------------------------------------hhhccCCCCchhhhhhcCChhHHHHH
Q 035643           79 ------------------------------------------------------LILMERGVTILHACVNYNQLESLRLL  104 (159)
Q Consensus        79 ------------------------------------------------------~~~~~~~~t~l~~a~~~~~~~~~~~L  104 (159)
                                                                            ......|-|.||.|+..|..+++++|
T Consensus       138 dg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lL  217 (527)
T KOG0505|consen  138 DGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALL  217 (527)
T ss_pred             CCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHH
Confidence                                                                  01122377999999999999999999


Q ss_pred             HhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643          105 VEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus       105 l~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      +..|.+   ++.+|.+|+||||.|+.=|..++.++|+.+ +++.......|.+||
T Consensus       218 l~ag~~---~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~-ga~~d~~t~~g~~p~  268 (527)
T KOG0505|consen  218 LQAGYS---VNIKDYDGWTPLHAAAHWGQEDACELLVEH-GADMDAKTKMGETPL  268 (527)
T ss_pred             HHhccC---cccccccCCCcccHHHHhhhHhHHHHHHHh-hcccchhhhcCCCCc
Confidence            999999   899999999999999999999999988888 556666667777765

>PHA02792 ankyrin-like protein; Provisional

Probab=99.81  E-value=1.6e-19  Score=130.75  Aligned_cols=148  Identities=17%  Similarity=0.137  Sum_probs=105.7

Q ss_pred             CCccccccCCCCCHHHHHHHhC-------ChHHHHHHhhcCCccceecCCCCCcHHHHHHHhC--CHHHHHHHHhc----
Q 035643            7 PEQAGELDSRKASPLHLAAAKG-------YLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRG--NVNVLKELVKV----   73 (159)
Q Consensus         7 ~~~~~~~~~~g~t~l~~a~~~~-------~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~l~~~----   73 (159)
                      +..+|..|..|.||||+|+.++       +.++++.|+++++++ +..|..|.||||+|+.+.  ..++++.|+..    
T Consensus       165 ~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~-~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~  243 (631)
T PHA02792        165 DYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEM-RYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSG  243 (631)
T ss_pred             ccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCc-CccCCCCChHHHHHHHcccchHHHHHHHHhccccc
Confidence            3456677777888888888888       788888888888877 467778888888888877  56666666640    


Q ss_pred             --------------------------------------------------------------------------------
Q 035643           74 --------------------------------------------------------------------------------   73 (159)
Q Consensus        74 --------------------------------------------------------------------------------   73 (159)
                                                                                                      
T Consensus       244 ~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~iei  323 (631)
T PHA02792        244 NELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINV  323 (631)
T ss_pred             cchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHH
Confidence                                                                                            


Q ss_pred             -------------------------------------CchhhhhhccC--CCCchhhhhhcCChh---HHHHHHhhcCCc
Q 035643           74 -------------------------------------RPQAALILMER--GVTILHACVNYNQLE---SLRLLVEIRNDH  111 (159)
Q Consensus        74 -------------------------------------~~~~~~~~~~~--~~t~l~~a~~~~~~~---~~~~Ll~~~~~~  111 (159)
                                                           .+.....++..  +.||||.|+.....+   +++++++.|++ 
T Consensus       324 IK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GAD-  402 (631)
T PHA02792        324 IKCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDD-  402 (631)
T ss_pred             HHHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCc-
Confidence                                                 01111122333  246666655544432   45666677777 


Q ss_pred             cccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643          112 EFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus       112 ~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                        ++.+|..|.||||+|+..+..+++++|+++ |++++..+..|.||+
T Consensus       403 --IN~kD~~G~TPLh~Aa~~~n~eivelLLs~-GADIN~kD~~G~TpL  447 (631)
T PHA02792        403 --INKIDKHGRSILYYCIESHSVSLVEWLIDN-GADINITTKYGSTCI  447 (631)
T ss_pred             --cccccccCcchHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHH
Confidence              778888899999999999999999999988 668888888888864

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.80  E-value=6.2e-19  Score=99.58  Aligned_cols=89  Identities=33%  Similarity=0.452  Sum_probs=64.4

Q ss_pred             HHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhcCChhH
Q 035643           21 LHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLES  100 (159)
Q Consensus        21 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~  100 (159)
                      ||+|+..|+.+++++|++.+.+.. .    |.+|+|+|+..|+.+++++|++. +.....++..|.||||+|+..++.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~-~----~~~~l~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADIN-L----GNTALHYAAENGNLEIVKLLLEN-GADINSQDKNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTT-S----SSBHHHHHHHTTTHHHHHHHHHT-TTCTT-BSTTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCC-C----CCCHHHHHHHcCCHHHHHHHHHh-cccccccCCCCCCHHHHHHHcCCHHH
Confidence            678888888888888888766552 2    67788888888888888888883 34555566778888888888888888


Q ss_pred             HHHHHhhcCCcccccccc
Q 035643          101 LRLLVEIRNDHEFVNSKD  118 (159)
Q Consensus       101 ~~~Ll~~~~~~~~~~~~~  118 (159)
                      +++|++.|++   ++.+|
T Consensus        75 ~~~Ll~~g~~---~~~~n   89 (89)
T PF12796_consen   75 VKLLLEHGAD---VNIRN   89 (89)
T ss_dssp             HHHHHHTTT----TTSS-
T ss_pred             HHHHHHcCCC---CCCcC
Confidence            8888887777   55443

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.79  E-value=3.2e-20  Score=121.25  Aligned_cols=130  Identities=21%  Similarity=0.162  Sum_probs=108.5

Q ss_pred             HHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhcCChhHHHHH
Q 035643           25 AAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLL  104 (159)
Q Consensus        25 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L  104 (159)
                      |+.|+.-.|+.-++......+.-|..|.+|||+|++.|+..++++|++++.. .+..+....||||+|+..|+.++++.|
T Consensus         8 cregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgar-vn~tnmgddtplhlaaahghrdivqkl   86 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGAR-VNSTNMGDDTPLHLAAAHGHRDIVQKL   86 (448)
T ss_pred             hhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccc-cccccCCCCcchhhhhhcccHHHHHHH
Confidence            4445444444445544444478899999999999999999999999995544 444455567999999999999999999


Q ss_pred             HhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643          105 VEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus       105 l~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      +++.++   ++..|++|.||||+||--|...+.+=|++. |+-+++.+..|.||+
T Consensus        87 l~~kad---vnavnehgntplhyacfwgydqiaedli~~-ga~v~icnk~g~tpl  137 (448)
T KOG0195|consen   87 LSRKAD---VNAVNEHGNTPLHYACFWGYDQIAEDLISC-GAAVNICNKKGMTPL  137 (448)
T ss_pred             HHHhcc---cchhhccCCCchhhhhhhcHHHHHHHHHhc-cceeeecccCCCCch
Confidence            999999   999999999999999999999999999998 668889999999885

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.79  E-value=2.3e-19  Score=101.34  Aligned_cols=89  Identities=38%  Similarity=0.523  Sum_probs=77.2

Q ss_pred             HHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCc
Q 035643           55 LHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQV  134 (159)
Q Consensus        55 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~  134 (159)
                      ||+|+..++.+++++|++.+.....     |.+|+|+|+..|+.+++++|++.|++   ++.+|..|+||||+|+..|+.
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~-----~~~~l~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~   72 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL-----GNTALHYAAENGNLEIVKLLLENGAD---INSQDKNGNTALHYAAENGNL   72 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS-----SSBHHHHHHHTTTHHHHHHHHHTTTC---TT-BSTTSSBHHHHHHHTTHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC-----CCCHHHHHHHcCCHHHHHHHHHhccc---ccccCCCCCCHHHHHHHcCCH
Confidence            6899999999999999995433322     88999999999999999999999999   899999999999999999999


Q ss_pred             ceeeeccCCCccCccccc
Q 035643          135 EVFYMDFDRNNMDNNIFY  152 (159)
Q Consensus       135 ~~~~~ll~~~~~~~~~~~  152 (159)
                      +++++|+++ +.+++.+|
T Consensus        73 ~~~~~Ll~~-g~~~~~~n   89 (89)
T PF12796_consen   73 EIVKLLLEH-GADVNIRN   89 (89)
T ss_dssp             HHHHHHHHT-TT-TTSS-
T ss_pred             HHHHHHHHc-CCCCCCcC
Confidence            999999999 66776543

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.79  E-value=2.5e-19  Score=119.91  Aligned_cols=135  Identities=22%  Similarity=0.284  Sum_probs=117.4

Q ss_pred             CccccccCCCCCHHHHHHHh-----CChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhc
Q 035643            8 EQAGELDSRKASPLHLAAAK-----GYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILM   82 (159)
Q Consensus         8 ~~~~~~~~~g~t~l~~a~~~-----~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~   82 (159)
                      -+||.++..|+||+++++..     .+.++|..|...+... -.....|.|+|+.|+.+|+.++++.|+. ++.+.+.+|
T Consensus       293 C~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVN-aKAsQ~gQTALMLAVSHGr~d~vk~LLa-cgAdVNiQD  370 (452)
T KOG0514|consen  293 CDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVN-AKASQHGQTALMLAVSHGRVDMVKALLA-CGADVNIQD  370 (452)
T ss_pred             ccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcc-hhhhhhcchhhhhhhhcCcHHHHHHHHH-ccCCCcccc
Confidence            47999999999999998854     4788888888777543 4667889999999999999999999999 556666778


Q ss_pred             cCCCCchhhhhhcCChhHHHHHHhh-cCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccC
Q 035643           83 ERGVTILHACVNYNQLESLRLLVEI-RNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMD  147 (159)
Q Consensus        83 ~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~  147 (159)
                      .+|.|+|++|+.+|+.+++++||.. +++   +...|.+|-|+|.+|...|+.+|..+|..+-++-
T Consensus       371 dDGSTALMCA~EHGhkEivklLLA~p~cd---~sLtD~DgSTAl~IAleagh~eIa~mlYa~~n~~  433 (452)
T KOG0514|consen  371 DDGSTALMCAAEHGHKEIVKLLLAVPSCD---ISLTDVDGSTALSIALEAGHREIAVMLYAHMNIK  433 (452)
T ss_pred             CCccHHHhhhhhhChHHHHHHHhccCccc---ceeecCCCchhhhhHHhcCchHHHHHHHHHHHhh
Confidence            8999999999999999999999976 477   8899999999999999999999999998875533

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.78  E-value=1e-18  Score=106.17  Aligned_cols=126  Identities=25%  Similarity=0.274  Sum_probs=104.6

Q ss_pred             ccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhh
Q 035643            2 ILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALIL   81 (159)
Q Consensus         2 ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~   81 (159)
                      ||.+..--||.+|.+|+||||-|+.+|+.++++.|+..+++. ..+...|+||||-||.-.+.+++..|++.+ .+.+..
T Consensus        82 lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~-~a~T~~GWTPLhSAckWnN~~va~~LLqhg-aDVnA~  159 (228)
T KOG0512|consen   82 LLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANK-EAKTNEGWTPLHSACKWNNFEVAGRLLQHG-ADVNAQ  159 (228)
T ss_pred             HHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCc-ccccccCccchhhhhcccchhHHHHHHhcc-Cccccc
Confidence            455667779999999999999999999999999999999998 678899999999999999999999999955 445555


Q ss_pred             ccCCCCchhhhhhcCCh-hHHHHHHhh-cCCccccccccCCCCCHHHHHHHhC
Q 035643           82 MERGVTILHACVNYNQL-ESLRLLVEI-RNDHEFVNSKDDNGSTILHLAVLEK  132 (159)
Q Consensus        82 ~~~~~t~l~~a~~~~~~-~~~~~Ll~~-~~~~~~~~~~~~~~~tpl~~a~~~~  132 (159)
                      .....||||.|+...+. ..+.+|+.. ...   ...++..+.||+.+|-+.+
T Consensus       160 t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~---pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  160 TKGLLTPLHLAAGNRNSRDTLELLLHDRYIH---PGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             ccccchhhHHhhcccchHHHHHHHhhccccC---hhhhcCccchHHHHHHHhh
Confidence            66678999999987654 456776653 333   5567888999999998764

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.77  E-value=4.5e-19  Score=127.98  Aligned_cols=135  Identities=24%  Similarity=0.241  Sum_probs=122.1

Q ss_pred             ccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhcc
Q 035643            4 RRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILME   83 (159)
Q Consensus         4 ~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~   83 (159)
                      ..+..++|..|.+|+|.||.|+.+|+.++++.|++..+-+ ...+..|.+|+|+|++.|+.+++++++... ...+..+-
T Consensus        36 ~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~l-dl~d~kg~~plhlaaw~g~~e~vkmll~q~-d~~na~~~  113 (854)
T KOG0507|consen   36 TTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALL-DLCDTKGILPLHLAAWNGNLEIVKMLLLQT-DILNAVNI  113 (854)
T ss_pred             CCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhh-hhhhccCcceEEehhhcCcchHHHHHHhcc-cCCCcccc
Confidence            3566789999999999999999999999999999987765 577789999999999999999999998855 55555666


Q ss_pred             CCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCC
Q 035643           84 RGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDR  143 (159)
Q Consensus        84 ~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~  143 (159)
                      +|.+|||.|++.++.+++++|+..+++   ...+|+.+.|++..|++.|..+++++|+..
T Consensus       114 e~~tplhlaaqhgh~dvv~~Ll~~~ad---p~i~nns~~t~ldlA~qfgr~~Vvq~ll~~  170 (854)
T KOG0507|consen  114 ENETPLHLAAQHGHLEVVFYLLKKNAD---PFIRNNSKETVLDLASRFGRAEVVQMLLQK  170 (854)
T ss_pred             cCcCccchhhhhcchHHHHHHHhcCCC---ccccCcccccHHHHHHHhhhhHHHHHHhhh
Confidence            899999999999999999999999999   677999999999999999999999999887

>PHA02792 ankyrin-like protein; Provisional

Probab=99.77  E-value=1.6e-18  Score=125.58  Aligned_cols=138  Identities=12%  Similarity=0.118  Sum_probs=113.2

Q ss_pred             CccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCC--CcHHHHHHHhCCHH---HHHHHHhcCc
Q 035643            1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDG--KNPLHIAAIRGNVN---VLKELVKVRP   75 (159)
Q Consensus         1 ~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~--~~~l~~a~~~~~~~---~~~~l~~~~~   75 (159)
                      |+|+++|++++.  .....+++.|+..|+.++++.|+++|+++ +.+|..|  .+|+|+|+.....+   +++++++ .+
T Consensus       325 K~LId~Ga~~~r--~~~~n~~~~Aa~~gn~eIVelLIs~GADI-N~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs-~G  400 (631)
T PHA02792        325 KCMIDEGATLYR--FKHINKYFQKFDNRDPKVVEYILKNGNVV-VEDDDNIINIMPLFPTLSIHESDVLSILKLCKP-YI  400 (631)
T ss_pred             HHHHHCCCcccc--CCcchHHHHHHHcCCHHHHHHHHHcCCch-hhhcCCCCChhHHHHHHHhccHhHHHHHHHHHh-cC
Confidence            468899998762  33677899999999999999999999998 5677664  68999987766543   5777788 44


Q ss_pred             hhhhhhccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHH---h-------CCcceeeeccCCCc
Q 035643           76 QAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVL---E-------KQVEVFYMDFDRNN  145 (159)
Q Consensus        76 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~---~-------~~~~~~~~ll~~~~  145 (159)
                      ...+.++..|.||||+|+..++.+++++|++.|++   ++.+|..|.||+++|+.   .       ...+++++|++++.
T Consensus       401 ADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GAD---IN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p  477 (631)
T PHA02792        401 DDINKIDKHGRSILYYCIESHSVSLVEWLIDNGAD---INITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLP  477 (631)
T ss_pred             CccccccccCcchHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCC
Confidence            55667888999999999999999999999999999   89999999999999976   1       22456888888854

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.76  E-value=1e-18  Score=108.36  Aligned_cols=100  Identities=15%  Similarity=0.131  Sum_probs=88.0

Q ss_pred             cccccCCCCCHHHHHHHhCCh---HHHHHHhhcCCccceecC-CCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCC
Q 035643           10 AGELDSRKASPLHLAAAKGYL---DIVLKLVSVNPEMCFARD-IDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERG   85 (159)
Q Consensus        10 ~~~~~~~g~t~l~~a~~~~~~---~~~~~ll~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~   85 (159)
                      ++..|.+|.||||+|+..++.   ++++.|++.+.++ +.++ ..|.||||+|+..++.+++++|+..........+..|
T Consensus        48 ~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadi-n~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g  126 (154)
T PHA02736         48 VLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADI-NGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAF  126 (154)
T ss_pred             HHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCc-cccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCC
Confidence            456788999999999999986   4688899999988 5676 5899999999999999999999975456667788899


Q ss_pred             CCchhhhhhcCChhHHHHHHhhcCC
Q 035643           86 VTILHACVNYNQLESLRLLVEIRND  110 (159)
Q Consensus        86 ~t~l~~a~~~~~~~~~~~Ll~~~~~  110 (159)
                      .||||+|+..++.+++++|+..|++
T Consensus       127 ~tpL~~A~~~~~~~i~~~Ll~~ga~  151 (154)
T PHA02736        127 KTPYYVACERHDAKMMNILRAKGAQ  151 (154)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999999999999999998876

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.75  E-value=2.3e-18  Score=130.03  Aligned_cols=128  Identities=25%  Similarity=0.291  Sum_probs=105.3

Q ss_pred             cCCCCCHHHHHHHhCChHHHHHHhhcCCccceecC--------------CCCCcHHHHHHHhCCHHHHHHHHhcCchhhh
Q 035643           14 DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARD--------------IDGKNPLHIAAIRGNVNVLKELVKVRPQAAL   79 (159)
Q Consensus        14 ~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~--------------~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~   79 (159)
                      +..|.||||+|+.+|+.++++.|++.|+++. .++              ..|.+|+|.|+..++.+++++|++ .+.+.+
T Consensus       125 ~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~-~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~-~gadin  202 (743)
T TIGR00870       125 FTPGITALHLAAHRQNYEIVKLLLERGASVP-ARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSE-DPADIL  202 (743)
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC-cCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhc-CCcchh
Confidence            3569999999999999999999999998873 332              358899999999999999999999 555667


Q ss_pred             hhccCCCCchhhhhhcC---------ChhHHHHHHhhcCCcccc----ccccCCCCCHHHHHHHhCCcceeeeccCC
Q 035643           80 ILMERGVTILHACVNYN---------QLESLRLLVEIRNDHEFV----NSKDDNGSTILHLAVLEKQVEVFYMDFDR  143 (159)
Q Consensus        80 ~~~~~~~t~l~~a~~~~---------~~~~~~~Ll~~~~~~~~~----~~~~~~~~tpl~~a~~~~~~~~~~~ll~~  143 (159)
                      .+|..|+||||+|+..+         ...+.+.+++.++.....    ...|..|.||+|+|+..|+.++++++++.
T Consensus       203 ~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~  279 (743)
T TIGR00870       203 TADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAI  279 (743)
T ss_pred             hHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHH
Confidence            78889999999999886         234556666665552112    55789999999999999999999999884

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.75  E-value=1.4e-18  Score=121.09  Aligned_cols=127  Identities=32%  Similarity=0.393  Sum_probs=112.7

Q ss_pred             CccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccce-----------------------------------
Q 035643            1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCF-----------------------------------   45 (159)
Q Consensus         1 ~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~-----------------------------------   45 (159)
                      ++|+++|++||..|.+||||||.|+..|+..+++++++++++...                                   
T Consensus        90 ~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~  169 (527)
T KOG0505|consen   90 KFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAA  169 (527)
T ss_pred             HHHHHhcCCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHH
Confidence            367899999999999999999999999999999999987775422                                   


Q ss_pred             -----------------------ecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhcCChhHHH
Q 035643           46 -----------------------ARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLR  102 (159)
Q Consensus        46 -----------------------~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  102 (159)
                                             ..+..|.|.+|+|+..|..++.++|++ .+.....+|.+|++|||.|+..++.++.+
T Consensus       170 R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~-ag~~~~~~D~dgWtPlHAAA~Wg~~~~~e  248 (527)
T KOG0505|consen  170 RKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQ-AGYSVNIKDYDGWTPLHAAAHWGQEDACE  248 (527)
T ss_pred             hhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHH-hccCcccccccCCCcccHHHHhhhHhHHH
Confidence                                   334447899999999999999999999 45666678999999999999999999999


Q ss_pred             HHHhhcCCccccccccCCCCCHHHHHHHh
Q 035643          103 LLVEIRNDHEFVNSKDDNGSTILHLAVLE  131 (159)
Q Consensus       103 ~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~  131 (159)
                      +|++++++   ++.....|.||+..|...
T Consensus       249 lL~~~ga~---~d~~t~~g~~p~dv~dee  274 (527)
T KOG0505|consen  249 LLVEHGAD---MDAKTKMGETPLDVADEE  274 (527)
T ss_pred             HHHHhhcc---cchhhhcCCCCccchhhh
Confidence            99999999   899999999999988763

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.72  E-value=5.7e-17  Score=106.09  Aligned_cols=131  Identities=32%  Similarity=0.417  Sum_probs=120.9

Q ss_pred             cccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCC-----HHHHHHHHhcCc--hhhhhhc
Q 035643           10 AGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGN-----VNVLKELVKVRP--QAALILM   82 (159)
Q Consensus        10 ~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~-----~~~~~~l~~~~~--~~~~~~~   82 (159)
                      ....+..+.++++.++..+..++++.++..+.++ +.++..|.||+|+|+..++     .++++.|++.+.  ......+
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~  144 (235)
T COG0666          66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRD  144 (235)
T ss_pred             cccCCccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccC
Confidence            4455667899999999999999999999999999 7999999999999999999     999999999776  4777779


Q ss_pred             cCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCC
Q 035643           83 ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRN  144 (159)
Q Consensus        83 ~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~  144 (159)
                      ..|.||||+|+..++.++++.+++.+++   +..++..|.|+++.|+..+..+++..++..+
T Consensus       145 ~~g~tpl~~A~~~~~~~~~~~ll~~~~~---~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         145 EDGNTPLHWAALNGDADIVELLLEAGAD---PNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCCCchhHHHHHcCchHHHHHHHhcCCC---CcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            9999999999999999999999999999   8889999999999999999999999998863

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.71  E-value=1.8e-17  Score=119.82  Aligned_cols=151  Identities=23%  Similarity=0.308  Sum_probs=118.7

Q ss_pred             ccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchh----
Q 035643            2 ILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQA----   77 (159)
Q Consensus         2 ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~----   77 (159)
                      +++.++..+|..+..|.||||.|+..|+.+++..|++.++++. .++.++.|++-.|++.|..++++.|++..-..    
T Consensus       100 mll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~-i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~  178 (854)
T KOG0507|consen  100 MLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPF-IRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSL  178 (854)
T ss_pred             HHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCcc-ccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcc
Confidence            4566678888888888888888888888888888888888884 78888888888888888888888888741111    


Q ss_pred             ---hhhhccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCC
Q 035643           78 ---ALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGC  154 (159)
Q Consensus        78 ---~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~  154 (159)
                         ...++-.+.+|+|.|+..|+.++++.|++.|-+   ++. -....|+||-|+..|..+++.+|++. +....+.+..
T Consensus       179 ~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~d---in~-~t~~gtalheaalcgk~evvr~ll~~-gin~h~~n~~  253 (854)
T KOG0507|consen  179 RVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFD---INY-TTEDGTALHEAALCGKAEVVRFLLEI-GINTHIKNQH  253 (854)
T ss_pred             cCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCC---ccc-ccccchhhhhHhhcCcchhhhHHHhh-cccccccccc
Confidence               111223466889999999999999999998888   654 34455899999999999999999988 6677788888


Q ss_pred             CCCC
Q 035643          155 GLSG  158 (159)
Q Consensus       155 g~~~  158 (159)
                      |+|+
T Consensus       254 ~qta  257 (854)
T KOG0507|consen  254 GQTA  257 (854)
T ss_pred             chHH
Confidence            8775

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.70  E-value=5.7e-17  Score=88.59  Aligned_cols=104  Identities=20%  Similarity=0.253  Sum_probs=87.1

Q ss_pred             HHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhcCChh
Q 035643           20 PLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLE   99 (159)
Q Consensus        20 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~   99 (159)
                      -+.|++++|.++-|+..+..+.+++  .-..|++|+|||+-+|+.+++++|+. -+...+.+|+.|.|||..|++.|+.+
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn--~~~ggR~plhyAAD~GQl~ilefli~-iGA~i~~kDKygITPLLsAvwEGH~~   81 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVN--EIYGGRTPLHYAADYGQLSILEFLIS-IGANIQDKDKYGITPLLSAVWEGHRD   81 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHH--HHhCCcccchHhhhcchHHHHHHHHH-hccccCCccccCCcHHHHHHHHhhHH
Confidence            4678999999999999988887663  33488999999999999999999999 44666778899999999999999999


Q ss_pred             HHHHHHhhcCCccccccccCCCCCHHHHHH
Q 035643          100 SLRLLVEIRNDHEFVNSKDDNGSTILHLAV  129 (159)
Q Consensus       100 ~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~  129 (159)
                      |+++|++.|++   -..+-.+|.+.+..+.
T Consensus        82 cVklLL~~GAd---rt~~~PdG~~~~eate  108 (117)
T KOG4214|consen   82 CVKLLLQNGAD---RTIHAPDGTALIEATE  108 (117)
T ss_pred             HHHHHHHcCcc---cceeCCCchhHHhhcc
Confidence            99999999999   5666777777765443

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.66  E-value=1.1e-16  Score=82.21  Aligned_cols=55  Identities=33%  Similarity=0.439  Sum_probs=32.5

Q ss_pred             cccCC-CccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHH
Q 035643            3 LRRKP-EQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIA   58 (159)
Q Consensus         3 l~~~~-~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a   58 (159)
                      |+++| .+++..|..|.||||+|+.+|+.+++++|++.+.++ +.+|..|.||+|+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~-~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADP-NAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--T-T---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCC-CCCcCCCCCHHHhC
Confidence            45556 999999999999999999999999999999999988 68999999999987

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.64  E-value=6.1e-16  Score=92.19  Aligned_cols=107  Identities=34%  Similarity=0.454  Sum_probs=92.2

Q ss_pred             cCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHH
Q 035643           47 RDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILH  126 (159)
Q Consensus        47 ~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~  126 (159)
                      ++..|.||||+|+..++.++++++++.+... ...+..|.+|+++|+..++.+++++|++.+..   ++..+..+.||+|
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~---~~~~~~~~~~~l~   78 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD---VNARDKDGNTPLH   78 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---ccccCCCCCCHHH
Confidence            5577899999999999999999999955443 56677899999999999999999999999877   7778889999999


Q ss_pred             HHHHhCCcceeeeccCCCccCcccccCCCCCC
Q 035643          127 LAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSG  158 (159)
Q Consensus       127 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~  158 (159)
                      +|+..+..+++++|++++ .+.+..+..|.|+
T Consensus        79 ~a~~~~~~~~~~~L~~~~-~~~~~~~~~~~~~  109 (126)
T cd00204          79 LAARNGNLDVVKLLLKHG-ADVNARDKDGRTP  109 (126)
T ss_pred             HHHHcCcHHHHHHHHHcC-CCCcccCCCCCCH
Confidence            999999999999999984 5555566677665

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.63  E-value=6.6e-16  Score=84.48  Aligned_cols=98  Identities=24%  Similarity=0.306  Sum_probs=82.7

Q ss_pred             HHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCC
Q 035643           54 PLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQ  133 (159)
Q Consensus        54 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~  133 (159)
                      .+.+++.+|..+-++..+..+-....  ...|++|||+|+.+|+.+++++|+..|++   ++.+|.+|-|||..|+..|+
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~--~~ggR~plhyAAD~GQl~ilefli~iGA~---i~~kDKygITPLLsAvwEGH   79 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNE--IYGGRTPLHYAADYGQLSILEFLISIGAN---IQDKDKYGITPLLSAVWEGH   79 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHH--HhCCcccchHhhhcchHHHHHHHHHhccc---cCCccccCCcHHHHHHHHhh
Confidence            56788999998888877765534333  33789999999999999999999999999   99999999999999999999


Q ss_pred             cceeeeccCCCccCcccccCCCCC
Q 035643          134 VEVFYMDFDRNNMDNNIFYGCGLS  157 (159)
Q Consensus       134 ~~~~~~ll~~~~~~~~~~~~~g~~  157 (159)
                      .+||++|+.. +++..++...|.+
T Consensus        80 ~~cVklLL~~-GAdrt~~~PdG~~  102 (117)
T KOG4214|consen   80 RDCVKLLLQN-GADRTIHAPDGTA  102 (117)
T ss_pred             HHHHHHHHHc-CcccceeCCCchh
Confidence            9999999999 5566666655543

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.62  E-value=2.4e-15  Score=76.75  Aligned_cols=54  Identities=43%  Similarity=0.672  Sum_probs=41.7

Q ss_pred             CCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHH
Q 035643           17 KASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELV   71 (159)
Q Consensus        17 g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~   71 (159)
                      |.||||+|+..|+.+++++|++.+.++ +.+|.+|.||+|+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~di-n~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADI-NAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGT-T-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            678999999999999999999888887 567888999999999999999988875

...

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.61  E-value=1.8e-15  Score=110.47  Aligned_cols=148  Identities=22%  Similarity=0.305  Sum_probs=113.0

Q ss_pred             ccccccCCCCCHHHHHHHh---CChHHHHHHhhcCCccce----ecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhh
Q 035643            9 QAGELDSRKASPLHLAAAK---GYLDIVLKLVSVNPEMCF----ARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALIL   81 (159)
Q Consensus         9 ~~~~~~~~g~t~l~~a~~~---~~~~~~~~ll~~~~~~~~----~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~   81 (159)
                      +++.+-..|.|.||.|..+   ++-++++.|++..+...+    .....|.||||+|+.+.+.++++.|++.+.++..+.
T Consensus       135 ~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa  214 (782)
T KOG3676|consen  135 KLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARA  214 (782)
T ss_pred             ccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHh
Confidence            4455566789999998874   355888888876554322    223568899999999999999999998655543211


Q ss_pred             ----------------------ccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeee
Q 035643           82 ----------------------MERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYM  139 (159)
Q Consensus        82 ----------------------~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~  139 (159)
                                            -..|+.||..|+..++.+++++|++.|+|   ++.+|..|+|.||..+..-..++-.+
T Consensus       215 ~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd---~~aqDS~GNTVLH~lVi~~~~~My~~  291 (782)
T KOG3676|consen  215 CGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGAD---PNAQDSNGNTVLHMLVIHFVTEMYDL  291 (782)
T ss_pred             hccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCC---CCccccCCChHHHHHHHHHHHHHHHH
Confidence                                  12367899999999999999999999999   88999999999999988877888888


Q ss_pred             ccCCCcc-CcccccCCCCCCC
Q 035643          140 DFDRNNM-DNNIFYGCGLSGY  159 (159)
Q Consensus       140 ll~~~~~-~~~~~~~~g~~~~  159 (159)
                      +++.++. ...+.+..|.||+
T Consensus       292 ~L~~ga~~l~~v~N~qgLTPL  312 (782)
T KOG3676|consen  292 ALELGANALEHVRNNQGLTPL  312 (782)
T ss_pred             HHhcCCCccccccccCCCChH
Confidence            8888553 3667888888885

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.61  E-value=1.1e-15  Score=111.48  Aligned_cols=127  Identities=23%  Similarity=0.261  Sum_probs=112.2

Q ss_pred             CCCCCHHHHHHHhCChHHHHHHhhcCCccce-------ecC---------------CCCCcHHHHHHHhCCHHHHHHHHh
Q 035643           15 SRKASPLHLAAAKGYLDIVLKLVSVNPEMCF-------ARD---------------IDGKNPLHIAAIRGNVNVLKELVK   72 (159)
Q Consensus        15 ~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~-------~~~---------------~~~~~~l~~a~~~~~~~~~~~l~~   72 (159)
                      ..|.||||.|+-+.+.++|+.|++.++++..       ..+               ..|..||.+|+-.++.+++++|++
T Consensus       182 Y~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~  261 (782)
T KOG3676|consen  182 YYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLA  261 (782)
T ss_pred             hcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHh
Confidence            5699999999999999999999998887621       111               135679999999999999999999


Q ss_pred             cCchhhhhhccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCC
Q 035643           73 VRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDR  143 (159)
Q Consensus        73 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~  143 (159)
                       .+.+++.+|..|+|.||..+..-..++-.++++.|++ .....+|..|.|||..|++.|+.++.+.++++
T Consensus       262 -~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~-~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  262 -HGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGAN-ALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             -cCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCC-ccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence             6677888899999999999999888999999999988 66788999999999999999999999998887

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.57  E-value=1.3e-14  Score=94.92  Aligned_cols=106  Identities=26%  Similarity=0.432  Sum_probs=95.4

Q ss_pred             ccccCCCccccccCCCCCHHHHHHHhCC-----hHHHHHHhhcCC--ccceecCCCCCcHHHHHHHhCCHHHHHHHHhcC
Q 035643            2 ILRRKPEQAGELDSRKASPLHLAAAKGY-----LDIVLKLVSVNP--EMCFARDIDGKNPLHIAAIRGNVNVLKELVKVR   74 (159)
Q Consensus         2 ll~~~~~~~~~~~~~g~t~l~~a~~~~~-----~~~~~~ll~~~~--~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~   74 (159)
                      +++..|++++..+..|.||||+|+..++     .++++.|++.++  +....++..|.||+|+|+..|+.++++.+++.+
T Consensus        91 ~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~  170 (235)
T COG0666          91 LLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAG  170 (235)
T ss_pred             HHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcC
Confidence            4678899999999999999999999999     999999999999  565778999999999999999999999999954


Q ss_pred             chhhhhhccCCCCchhhhhhcCChhHHHHHHhhc
Q 035643           75 PQAALILMERGVTILHACVNYNQLESLRLLVEIR  108 (159)
Q Consensus        75 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~  108 (159)
                       ......+..|.|+++.|+..+..++++.++..+
T Consensus       171 -~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         171 -ADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             -CCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence             444455788999999999999999999999864

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.57  E-value=1.5e-14  Score=107.82  Aligned_cols=106  Identities=25%  Similarity=0.245  Sum_probs=92.1

Q ss_pred             HHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhcCChh
Q 035643           20 PLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLE   99 (159)
Q Consensus        20 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~   99 (159)
                      .|+.|+..|+.+.++.|++.++++ +.+|..|.||||+|+..|+.+++++|++. +.....++..|.||||+|+..++.+
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadi-n~~d~~G~TpLh~Aa~~g~~eiv~~LL~~-Gadvn~~d~~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADP-NCRDYDGRTPLHIACANGHVQVVRVLLEF-GADPTLLDKDGKTPLELAEENGFRE  162 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHCCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCCcHH
Confidence            478899999999999999999988 68899999999999999999999999995 4555677889999999999999999


Q ss_pred             HHHHHHhh-------cCCccccccccCCCCCHHHHHHH
Q 035643          100 SLRLLVEI-------RNDHEFVNSKDDNGSTILHLAVL  130 (159)
Q Consensus       100 ~~~~Ll~~-------~~~~~~~~~~~~~~~tpl~~a~~  130 (159)
                      ++++|+..       +++   ....+..|.+|+..+..
T Consensus       163 iv~~Ll~~~~~~~~~ga~---~~~~~~~g~~~~~~~~~  197 (664)
T PTZ00322        163 VVQLLSRHSQCHFELGAN---AKPDSFTGKPPSLEDSP  197 (664)
T ss_pred             HHHHHHhCCCcccccCCC---CCccccCCCCccchhhh
Confidence            99999988       666   66677777777665543

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.55  E-value=3.5e-15  Score=76.56  Aligned_cols=54  Identities=35%  Similarity=0.429  Sum_probs=25.8

Q ss_pred             hcCchhhhhhccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHH
Q 035643           72 KVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLA  128 (159)
Q Consensus        72 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a  128 (159)
                      +.+......+|..|.||||+|+..|+.+++++|++.+++   ++.+|..|+||+|+|
T Consensus         3 ~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d---~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    3 EHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGAD---PNAKDKDGQTPLHYA   56 (56)
T ss_dssp             ---T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT-----TT---TTS--HHHH-
T ss_pred             ccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCC---CCCCcCCCCCHHHhC
Confidence            333355556677777777777777777777777777777   677777777777765

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.55  E-value=2.3e-15  Score=76.83  Aligned_cols=53  Identities=30%  Similarity=0.450  Sum_probs=23.9

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhcCChhHHHHH
Q 035643           51 GKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLL  104 (159)
Q Consensus        51 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L  104 (159)
                      |+||+|+|+..|+.+++++|++.+ ......|.+|.||||+|+..|+.+++++|
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~-~din~~d~~g~t~lh~A~~~g~~~~~~~L   53 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHG-ADINAQDEDGRTPLHYAAKNGNIDIVKFL   53 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTT-SGTT-B-TTS--HHHHHHHTT-HHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHccCHHHHHHH
Confidence            345555555555555555555532 33333355555555555555555555554

...

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.53  E-value=3.7e-15  Score=112.43  Aligned_cols=123  Identities=21%  Similarity=0.202  Sum_probs=63.7

Q ss_pred             CCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhcC
Q 035643           17 KASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYN   96 (159)
Q Consensus        17 g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~   96 (159)
                      -.|+|-.||+.|+-|.++.|+.+|++. ..+|+.|.+|+..|+..|+..+++.|+.....+....|+.+.|+|.+||..|
T Consensus       757 ~~t~LT~acaggh~e~vellv~rgani-ehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsgg  835 (2131)
T KOG4369|consen  757 IKTNLTSACAGGHREEVELLVVRGANI-EHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGG  835 (2131)
T ss_pred             ccccccccccCccHHHHHHHHHhcccc-cccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCC
Confidence            344555555555555555555555544 3455555555555555555555555554444444444555555555555555


Q ss_pred             ChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCC
Q 035643           97 QLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDR  143 (159)
Q Consensus        97 ~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~  143 (159)
                      +.+++++|+..|++   -..++....|||.+|...|..+++++|+..
T Consensus       836 r~~vvelLl~~gan---kehrnvsDytPlsla~Sggy~~iI~~llS~  879 (2131)
T KOG4369|consen  836 RTRVVELLLNAGAN---KEHRNVSDYTPLSLARSGGYTKIIHALLSS  879 (2131)
T ss_pred             cchHHHHHHHhhcc---ccccchhhcCchhhhcCcchHHHHHHHhhc
Confidence            55555555555554   333444445555555555555555555555

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.52  E-value=2.8e-14  Score=106.46  Aligned_cols=101  Identities=21%  Similarity=0.101  Sum_probs=86.1

Q ss_pred             HHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCC
Q 035643           54 PLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQ  133 (159)
Q Consensus        54 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~  133 (159)
                      .|+.|+..|+.+.++.|++.+ ...+.++..|.||||+|+..|+.+++++|++.|++   ++.+|..|.||||+|+..++
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~G-adin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gad---vn~~d~~G~TpLh~A~~~g~  160 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGG-ADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGAD---PTLLDKDGKTPLELAEENGF  160 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHCCc
Confidence            478899999999999999954 55566788999999999999999999999999999   89999999999999999999


Q ss_pred             cceeeeccCC------CccCcccccCCCCCC
Q 035643          134 VEVFYMDFDR------NNMDNNIFYGCGLSG  158 (159)
Q Consensus       134 ~~~~~~ll~~------~~~~~~~~~~~g~~~  158 (159)
                      .+++++|+++      .+.+.+..+..|.++
T Consensus       161 ~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~  191 (664)
T PTZ00322        161 REVVQLLSRHSQCHFELGANAKPDSFTGKPP  191 (664)
T ss_pred             HHHHHHHHhCCCcccccCCCCCccccCCCCc
Confidence            9999999987      234444444445443

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.49  E-value=2.2e-14  Score=108.38  Aligned_cols=144  Identities=18%  Similarity=0.171  Sum_probs=128.8

Q ss_pred             CccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhh
Q 035643            1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALI   80 (159)
Q Consensus         1 ~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~   80 (159)
                      ++|+.+|+++..+|..|++||.+|+..|+..+|..|+.+.+++.-..|..+-|+|.+||..|+.++++.|+. ....-..
T Consensus       774 ellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~-~gankeh  852 (2131)
T KOG4369|consen  774 ELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLN-AGANKEH  852 (2131)
T ss_pred             HHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHH-hhccccc
Confidence            368899999999999999999999999999999999999999877889999999999999999999999999 4455556


Q ss_pred             hccCCCCchhhhhhcCChhHHHHHHhhcCCcccccccc--CCCCCHHHHHHHhCCcceeeeccCCCccCc
Q 035643           81 LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKD--DNGSTILHLAVLEKQVEVFYMDFDRNNMDN  148 (159)
Q Consensus        81 ~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~--~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~  148 (159)
                      ++-...|||.+|..-|..+++..|+..|.+   |+.+.  ..|-+||+.|...|+......|++.+...+
T Consensus       853 rnvsDytPlsla~Sggy~~iI~~llS~Gse---InSrtgSklgisPLmlatmngh~~at~~ll~~gsdiN  919 (2131)
T KOG4369|consen  853 RNVSDYTPLSLARSGGYTKIIHALLSSGSE---INSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDIN  919 (2131)
T ss_pred             cchhhcCchhhhcCcchHHHHHHHhhcccc---cccccccccCcchhhhhhhccccHHHHHHhcccchhc
Confidence            677788999999999999999999999988   66654  568899999999999999999999965433

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.47  E-value=1.8e-13  Score=89.75  Aligned_cols=122  Identities=21%  Similarity=0.180  Sum_probs=106.4

Q ss_pred             CCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhcC
Q 035643           17 KASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYN   96 (159)
Q Consensus        17 g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~   96 (159)
                      -..||..+...++.+-...|++.-..+ +.+|+.|.++|..|+..|+.++++.+++.+.+++......+.||||.|+..|
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~v-n~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSG   90 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQV-NQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSG   90 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhhh-hccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcC
Confidence            356888899999999888888876555 6899999999999999999999999999888887777888899999999999


Q ss_pred             ChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccC
Q 035643           97 QLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFD  142 (159)
Q Consensus        97 ~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~  142 (159)
                      +.++...|++.|+.   +...|.-|+|+-..|+--|+.+||..+-.
T Consensus        91 n~dvcrllldaGa~---~~~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   91 NQDVCRLLLDAGAR---MYLVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             CchHHHHHHhccCc---cccccchhhhHHHHHHHhcchHHHHHHhc
Confidence            99999999999999   77788889999999999999998876543

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.45  E-value=1.5e-13  Score=96.59  Aligned_cols=122  Identities=21%  Similarity=0.173  Sum_probs=94.2

Q ss_pred             CCCHHH---HHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhh
Q 035643           17 KASPLH---LAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACV   93 (159)
Q Consensus        17 g~t~l~---~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~   93 (159)
                      .++||-   -|+..|-+++|+.++..-.++ ...+..|.|+||.|+..|+.+|+++|++ .+.+.+..|.+|+||||+|+
T Consensus       547 rfnPLaLLLDaaLeGEldlVq~~i~ev~Dp-SqpNdEGITaLHNAiCaghyeIVkFLi~-~ganVNa~DSdGWTPLHCAA  624 (752)
T KOG0515|consen  547 RFNPLALLLDAALEGELDLVQRIIYEVTDP-SQPNDEGITALHNAICAGHYEIVKFLIE-FGANVNAADSDGWTPLHCAA  624 (752)
T ss_pred             ecchHHHHHhhhhcchHHHHHHHHHhhcCC-CCCCccchhHHhhhhhcchhHHHHHHHh-cCCcccCccCCCCchhhhhh
Confidence            445543   467789999999999887777 6788899999999999999999999999 45666677889999999999


Q ss_pred             hcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHH--hCCcceeeeccC
Q 035643           94 NYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVL--EKQVEVFYMDFD  142 (159)
Q Consensus        94 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~--~~~~~~~~~ll~  142 (159)
                      .+++..+++.|++.|+-.  .-..-.++.|+...+..  .|...|.+||..
T Consensus       625 SCNnv~~ckqLVe~Gaav--fAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  625 SCNNVPMCKQLVESGAAV--FASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             hcCchHHHHHHHhccceE--EeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            999999999999988763  22233456677666533  455566655543

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.44  E-value=5.7e-14  Score=98.72  Aligned_cols=99  Identities=19%  Similarity=0.226  Sum_probs=86.0

Q ss_pred             HHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcc
Q 035643           56 HIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVE  135 (159)
Q Consensus        56 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~  135 (159)
                      .-|+..|-.++++..+. ...+....+.+|.|+||.|+..|+.+++++|++.|++   ++..|.+|+||||.|+.-++..
T Consensus       555 LDaaLeGEldlVq~~i~-ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~gan---VNa~DSdGWTPLHCAASCNnv~  630 (752)
T KOG0515|consen  555 LDAALEGELDLVQRIIY-EVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGAN---VNAADSDGWTPLHCAASCNNVP  630 (752)
T ss_pred             HhhhhcchHHHHHHHHH-hhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCc---ccCccCCCCchhhhhhhcCchH
Confidence            45778899999988877 3455556678899999999999999999999999999   9999999999999999999999


Q ss_pred             eeeeccCCCccCcccccCCCCCC
Q 035643          136 VFYMDFDRNNMDNNIFYGCGLSG  158 (159)
Q Consensus       136 ~~~~ll~~~~~~~~~~~~~g~~~  158 (159)
                      +++.|++.|++........+.|+
T Consensus       631 ~ckqLVe~GaavfAsTlSDmeTa  653 (752)
T KOG0515|consen  631 MCKQLVESGAAVFASTLSDMETA  653 (752)
T ss_pred             HHHHHHhccceEEeeecccccch
Confidence            99999999987776666666554

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.39  E-value=9.5e-13  Score=86.46  Aligned_cols=100  Identities=22%  Similarity=0.225  Sum_probs=88.4

Q ss_pred             CCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCC
Q 035643            6 KPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERG   85 (159)
Q Consensus         6 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~   85 (159)
                      .-.++|..|.+|.++|..|+..|+.+.++.+++.+++++..++..++||||+|+..|+.++...|++.+ ..+...+.-|
T Consensus        34 ~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaG-a~~~~vNsvg  112 (396)
T KOG1710|consen   34 TVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAG-ARMYLVNSVG  112 (396)
T ss_pred             HhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhcc-Cccccccchh
Confidence            344689999999999999999999999999999999998888999999999999999999999999954 4444456678


Q ss_pred             CCchhhhhhcCChhHHHHHHh
Q 035643           86 VTILHACVNYNQLESLRLLVE  106 (159)
Q Consensus        86 ~t~l~~a~~~~~~~~~~~Ll~  106 (159)
                      +|+-..|+.-|+.+|+.++-.
T Consensus       113 rTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen  113 RTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             hhHHHHHHHhcchHHHHHHhc
Confidence            999999999999999887654

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.20  E-value=1.9e-11  Score=85.17  Aligned_cols=96  Identities=23%  Similarity=0.283  Sum_probs=86.7

Q ss_pred             ccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhh
Q 035643           13 LDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHAC   92 (159)
Q Consensus        13 ~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a   92 (159)
                      .+.++..++.+|++.|++..++.+.-.+.+. ..+|.+.+|+||+|+..|+.+++++|++....+...+|++|+|||.-|
T Consensus       502 ~~~~~~i~~~~aa~~GD~~alrRf~l~g~D~-~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA  580 (622)
T KOG0506|consen  502 RENDTVINVMYAAKNGDLSALRRFALQGMDL-ETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDA  580 (622)
T ss_pred             ccccchhhhhhhhhcCCHHHHHHHHHhcccc-cccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHh
Confidence            3456788899999999999999998888888 689999999999999999999999999988888888999999999999


Q ss_pred             hhcCChhHHHHHHhhcC
Q 035643           93 VNYNQLESLRLLVEIRN  109 (159)
Q Consensus        93 ~~~~~~~~~~~Ll~~~~  109 (159)
                      ...++.+++++|-+...
T Consensus       581 ~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  581 KHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             HhcCcHHHHHHHHHHhc
Confidence            99999999999987643

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=99.10  E-value=4.2e-10  Score=80.52  Aligned_cols=121  Identities=21%  Similarity=0.151  Sum_probs=100.7

Q ss_pred             HHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCc-hhhhhhccCCCCchhhhhhcCChhH
Q 035643           22 HLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRP-QAALILMERGVTILHACVNYNQLES  100 (159)
Q Consensus        22 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~-~~~~~~~~~~~t~l~~a~~~~~~~~  100 (159)
                      .-|+..+++--+...-..+.++ .+++++.++.||+|+..|.-++++++++.++ ....+.+..|+|+||-|+..++..+
T Consensus       871 l~av~~~D~~klqE~h~~gg~l-l~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~v  949 (1004)
T KOG0782|consen  871 LRAVLSSDLMKLQETHLNGGSL-LIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAV  949 (1004)
T ss_pred             HHHHHhccHHHHHHHHhcCCce-EeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHH
Confidence            3455555544444444456666 4899999999999999999999999999665 4556778899999999999999999


Q ss_pred             HHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCcc
Q 035643          101 LRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNM  146 (159)
Q Consensus       101 ~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~  146 (159)
                      .++|++.|+.   +...|..|.||-..|-..|.++++.||-++.+.
T Consensus       950 c~~lvdagas---l~ktd~kg~tp~eraqqa~d~dlaayle~rq~y  992 (1004)
T KOG0782|consen  950 CQLLVDAGAS---LRKTDSKGKTPQERAQQAGDPDLAAYLESRQNY  992 (1004)
T ss_pred             HHHHHhcchh---heecccCCCChHHHHHhcCCchHHHHHhhhhch
Confidence            9999999999   888999999999999999999999998877553

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.08  E-value=6.2e-11  Score=87.83  Aligned_cols=97  Identities=21%  Similarity=0.259  Sum_probs=83.8

Q ss_pred             HHHH-hhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhcCChhHHHHHHhhcCCc
Q 035643           33 VLKL-VSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDH  111 (159)
Q Consensus        33 ~~~l-l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~  111 (159)
                      ++.+ -..+.+..+++|..|++++|+++..+..++++||++.+.....+....|.||||-|..+|+.+|+..|+..|.. 
T Consensus        33 lk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S-  111 (1267)
T KOG0783|consen   33 LKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRS-  111 (1267)
T ss_pred             HHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCc-
Confidence            4443 44566667889999999999999999999999999977666666667899999999999999999999999999 


Q ss_pred             cccccccCCCCCHHHHHHHhC
Q 035643          112 EFVNSKDDNGSTILHLAVLEK  132 (159)
Q Consensus       112 ~~~~~~~~~~~tpl~~a~~~~  132 (159)
                        +..+|.+|.+||...++..
T Consensus       112 --L~i~Dkeglsplq~~~r~~  130 (1267)
T KOG0783|consen  112 --LRIKDKEGLSPLQFLSRVL  130 (1267)
T ss_pred             --eEEecccCCCHHHHHhhcc
Confidence              8999999999999888743

>PF13606 Ank_3: Ankyrin repeat

Probab=98.98  E-value=9.3e-10  Score=48.66  Aligned_cols=28  Identities=36%  Similarity=0.615  Sum_probs=24.1

Q ss_pred             CCCCHHHHHHHhCChHHHHHHhhcCCcc
Q 035643           16 RKASPLHLAAAKGYLDIVLKLVSVNPEM   43 (159)
Q Consensus        16 ~g~t~l~~a~~~~~~~~~~~ll~~~~~~   43 (159)
                      +|+||||+|+..|+.+++++|++.++++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            5889999999999999999999888765

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.97  E-value=3.4e-10  Score=84.07  Aligned_cols=83  Identities=20%  Similarity=0.224  Sum_probs=74.7

Q ss_pred             cccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecC-CCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCc
Q 035643           10 AGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARD-IDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTI   88 (159)
Q Consensus        10 ~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~   88 (159)
                      .|.+|..|+|+||+++..+..+++++|+++|.++. .+| +.|+||||-|+.+|+.+++-.|+..+ .....+|++|.+|
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~-vqD~ESG~taLHRaiyyG~idca~lLL~~g-~SL~i~Dkeglsp  122 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVF-VQDEESGYTALHRAIYYGNIDCASLLLSKG-RSLRIKDKEGLSP  122 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceee-eccccccchHhhHhhhhchHHHHHHHHhcC-CceEEecccCCCH
Confidence            67889999999999999999999999999999985 565 78999999999999999999999944 6667789999999


Q ss_pred             hhhhhh
Q 035643           89 LHACVN   94 (159)
Q Consensus        89 l~~a~~   94 (159)
                      |..-++
T Consensus       123 lq~~~r  128 (1267)
T KOG0783|consen  123 LQFLSR  128 (1267)
T ss_pred             HHHHhh
Confidence            988776

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.91  E-value=2.8e-09  Score=48.38  Aligned_cols=28  Identities=36%  Similarity=0.530  Sum_probs=24.6

Q ss_pred             CCCCHHHHHHHhCChHHHHHHhhcCCcc
Q 035643           16 RKASPLHLAAAKGYLDIVLKLVSVNPEM   43 (159)
Q Consensus        16 ~g~t~l~~a~~~~~~~~~~~ll~~~~~~   43 (159)
                      +|.||||+|+..|+.+++++|+++++++
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~   28 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADI   28 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCC
Confidence            5889999999999999999999988877

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.85  E-value=9.1e-09  Score=73.91  Aligned_cols=103  Identities=21%  Similarity=0.135  Sum_probs=89.2

Q ss_pred             cCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCc-cceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhcc
Q 035643            5 RKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPE-MCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILME   83 (159)
Q Consensus         5 ~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~   83 (159)
                      .+|-++..++.+..+.||+|++-|+-++|++|+++++. +.+..+..|.|+||.|+..++..+.++|++.+ ......|.
T Consensus       887 ~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdag-asl~ktd~  965 (1004)
T KOG0782|consen  887 LNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAG-ASLRKTDS  965 (1004)
T ss_pred             hcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcc-hhheeccc
Confidence            45667888899999999999999999999999999884 33566789999999999999999999999955 44556678


Q ss_pred             CCCCchhhhhhcCChhHHHHHHhhc
Q 035643           84 RGVTILHACVNYNQLESLRLLVEIR  108 (159)
Q Consensus        84 ~~~t~l~~a~~~~~~~~~~~Ll~~~  108 (159)
                      .|.||-.-|-+.++.+.+.+|-.+.
T Consensus       966 kg~tp~eraqqa~d~dlaayle~rq  990 (1004)
T KOG0782|consen  966 KGKTPQERAQQAGDPDLAAYLESRQ  990 (1004)
T ss_pred             CCCChHHHHHhcCCchHHHHHhhhh
Confidence            8999999999999999999997754

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.84  E-value=1.8e-09  Score=75.66  Aligned_cols=92  Identities=21%  Similarity=0.132  Sum_probs=79.2

Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHH
Q 035643           49 IDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLA  128 (159)
Q Consensus        49 ~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a  128 (159)
                      ..+.-++.+|++.|....++-+.- .+.+...+|.+.+|+||.|+..|+.+++++|++.....  ...+|.+|+|||.-|
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l-~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~--~~~kDRw~rtPlDdA  580 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFAL-QGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVD--PDPKDRWGRTPLDDA  580 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHH-hcccccccccccchhheeecccCceeHHHHHHHHHcCC--CChhhccCCCcchHh
Confidence            345578999999999998877766 45677788999999999999999999999999875433  778999999999999


Q ss_pred             HHhCCcceeeeccCC
Q 035643          129 VLEKQVEVFYMDFDR  143 (159)
Q Consensus       129 ~~~~~~~~~~~ll~~  143 (159)
                      ...++.+++++|-+.
T Consensus       581 ~~F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  581 KHFKHKEVVKLLEEA  595 (622)
T ss_pred             HhcCcHHHHHHHHHH
Confidence            999999999988664

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.83  E-value=4.5e-09  Score=74.03  Aligned_cols=86  Identities=24%  Similarity=0.259  Sum_probs=72.3

Q ss_pred             HHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCC
Q 035643           54 PLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQ  133 (159)
Q Consensus        54 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~  133 (159)
                      .||-+++.|+.+..--|+..+...+-.....|.||||.|+..|+...+++|+-+|++   +...|..|.||+.+|-..|+
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD---~~a~d~~GmtP~~~AR~~gH  212 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGAD---PGAQDSSGMTPVDYARQGGH  212 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCC---CCCCCCCCCcHHHHHHhcCc
Confidence            478888888888766666657666555556789999999999999999999999999   88899999999999999999


Q ss_pred             cceeeeccC
Q 035643          134 VEVFYMDFD  142 (159)
Q Consensus       134 ~~~~~~ll~  142 (159)
                      .++.+-|++
T Consensus       213 ~~laeRl~e  221 (669)
T KOG0818|consen  213 HELAERLVE  221 (669)
T ss_pred             hHHHHHHHH
Confidence            988887766

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.81  E-value=1.5e-08  Score=71.88  Aligned_cols=68  Identities=25%  Similarity=0.397  Sum_probs=54.4

Q ss_pred             cCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhc
Q 035643            5 RKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV   73 (159)
Q Consensus         5 ~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~   73 (159)
                      +....++..|..|.||||+|+..|+.+.++.|+..+++. ..++..|+++||-|+.+|+.+++..++..
T Consensus        43 ~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv-~~kN~~gWs~L~EAv~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   43 KVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADV-SIKNNEGWSPLHEAVSTGNEQIITEVLRH  110 (560)
T ss_pred             hhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCc-cccccccccHHHHHHHcCCHHHHHHHHHH
Confidence            455677888888888888888888888888888888877 57888888888888888888877777663

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.80  E-value=6.6e-09  Score=47.12  Aligned_cols=31  Identities=29%  Similarity=0.473  Sum_probs=20.4

Q ss_pred             CCCchhhhhhcCChhHHHHHHhhcCCcccccccc
Q 035643           85 GVTILHACVNYNQLESLRLLVEIRNDHEFVNSKD  118 (159)
Q Consensus        85 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  118 (159)
                      |.||||+|+..++.+++++|++.|++   ++.+|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~---~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGAD---INARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSC---TTCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCC---CCCCC
Confidence            56677777777777777777776666   45443

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.78  E-value=3e-08  Score=70.07  Aligned_cols=94  Identities=24%  Similarity=0.270  Sum_probs=80.0

Q ss_pred             cccCCCCCH------HHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCC
Q 035643           12 ELDSRKASP------LHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERG   85 (159)
Q Consensus        12 ~~~~~g~t~------l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~   85 (159)
                      .+|.+|.+.      ||.+++.|++++.-.|+..|++.+..-...|.||||.|++.|+..-+++|+- .+.++...|.+|
T Consensus       122 ~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~v-YGAD~~a~d~~G  200 (669)
T KOG0818|consen  122 CRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAV-YGADPGAQDSSG  200 (669)
T ss_pred             CCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhh-ccCCCCCCCCCC
Confidence            455666554      8999999999999999999999976667889999999999999999998888 556666779999


Q ss_pred             CCchhhhhhcCChhHHHHHHh
Q 035643           86 VTILHACVNYNQLESLRLLVE  106 (159)
Q Consensus        86 ~t~l~~a~~~~~~~~~~~Ll~  106 (159)
                      .||+.+|...|+.++.+-|++
T Consensus       201 mtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  201 MTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             CcHHHHHHhcCchHHHHHHHH
Confidence            999999999999888777765

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.76  E-value=3.1e-08  Score=71.10  Aligned_cols=90  Identities=22%  Similarity=0.216  Sum_probs=65.2

Q ss_pred             HHHHHHhCChHHHHHHhhcCCcc---ceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhcCC
Q 035643           21 LHLAAAKGYLDIVLKLVSVNPEM---CFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQ   97 (159)
Q Consensus        21 l~~a~~~~~~~~~~~ll~~~~~~---~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~   97 (159)
                      |.-|....++..+-.||.++...   ....+.+|+|+||.||+.|+..+.++|+. .+.+...+|..|+|+|.||.+.|.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiW-yg~dv~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIW-YGVDVMARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHH-hCccceecccCCchhhhhHhhccc
Confidence            44566666777777777766532   12335667888888888888888888886 555556677788888888888888


Q ss_pred             hhHHHHHHhhcCCc
Q 035643           98 LESLRLLVEIRNDH  111 (159)
Q Consensus        98 ~~~~~~Ll~~~~~~  111 (159)
                      .+|+.+|+++|+..
T Consensus       707 qec~d~llq~gcp~  720 (749)
T KOG0705|consen  707 QECIDVLLQYGCPD  720 (749)
T ss_pred             HHHHHHHHHcCCCc
Confidence            88888888887763

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.76  E-value=6.9e-09  Score=73.55  Aligned_cols=87  Identities=23%  Similarity=0.272  Sum_probs=50.6

Q ss_pred             HHHHHHHhCChHHHHHHh-hcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhcCCh
Q 035643           20 PLHLAAAKGYLDIVLKLV-SVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQL   98 (159)
Q Consensus        20 ~l~~a~~~~~~~~~~~ll-~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~   98 (159)
                      |+|+++.....+.+...+ ..-....+.+|..|.||||.|+..|+...++.|+..+ .+...+++.|.+|||.|+..|+.
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~-Adv~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAG-ADVSIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcC-CCccccccccccHHHHHHHcCCH
Confidence            366666655444444422 2223333566666667777777777766666666633 33445566666777777777666


Q ss_pred             hHHHHHHhh
Q 035643           99 ESLRLLVEI  107 (159)
Q Consensus        99 ~~~~~Ll~~  107 (159)
                      .++..++.+
T Consensus       102 q~i~~vlr~  110 (560)
T KOG0522|consen  102 QIITEVLRH  110 (560)
T ss_pred             HHHHHHHHH
Confidence            666555553

>PF13606 Ank_3: Ankyrin repeat

Probab=98.74  E-value=1.2e-08  Score=45.09  Aligned_cols=26  Identities=31%  Similarity=0.437  Sum_probs=12.1

Q ss_pred             CCCchhhhhhcCChhHHHHHHhhcCC
Q 035643           85 GVTILHACVNYNQLESLRLLVEIRND  110 (159)
Q Consensus        85 ~~t~l~~a~~~~~~~~~~~Ll~~~~~  110 (159)
                      |+||||+|+..|+.+++++|++.|++
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gad   27 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGAD   27 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence            34444444444444444444444443

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.57  E-value=9.3e-08  Score=71.45  Aligned_cols=130  Identities=18%  Similarity=0.141  Sum_probs=99.9

Q ss_pred             CCCCCHHHHHHHhCChHHHHHHhhcCCc---cceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhh
Q 035643           15 SRKASPLHLAAAKGYLDIVLKLVSVNPE---MCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHA   91 (159)
Q Consensus        15 ~~g~t~l~~a~~~~~~~~~~~ll~~~~~---~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~   91 (159)
                      ..+.--+..|+.+|+...|+.+++....   ..+..|.-|+++++.|+.+.+.++.++|++.....        ..+|-+
T Consensus        23 ~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL~   94 (822)
T KOG3609|consen   23 NEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALLL   94 (822)
T ss_pred             chhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--------chHHHH
Confidence            3445567789999999999999874332   33578999999999999999999999999843222        257888


Q ss_pred             hhhcCChhHHHHHHhhcCCcccc-------ccccCCCCCHHHHHHHhCCcceeeeccCCCccCccccc
Q 035643           92 CVNYNQLESLRLLVEIRNDHEFV-------NSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFY  152 (159)
Q Consensus        92 a~~~~~~~~~~~Ll~~~~~~~~~-------~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~  152 (159)
                      |+..+....++.++.........       ...-..+.||+..|+..++.+|+++|+.+|+.-...++
T Consensus        95 aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~PH~  162 (822)
T KOG3609|consen   95 AIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIPHD  162 (822)
T ss_pred             HHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCCcc
Confidence            99999999999999865442110       11223467999999999999999999999886665544

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.50  E-value=6.2e-07  Score=56.08  Aligned_cols=66  Identities=17%  Similarity=0.097  Sum_probs=60.9

Q ss_pred             CCccccccCCCCCHHHHHHHhCChHHHHHHhhcC-CccceecCCCCCcHHHHHHHhCCHHHHHHHHhc
Q 035643            7 PEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVN-PEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV   73 (159)
Q Consensus         7 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~   73 (159)
                      +.++|..|..|||++..|+..|..+.+.+|+.++ +.+ ...|..|.+++.+|-+.|+..++..|-+.
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~v-gv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFV-GVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccc-cccccccchHHHHHHhcChHHHHHHHHHH
Confidence            5689999999999999999999999999999999 555 78999999999999999999999998874

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.47  E-value=1.1e-07  Score=72.40  Aligned_cols=132  Identities=19%  Similarity=0.123  Sum_probs=101.8

Q ss_pred             cccccCCCCCHHHHHHHhCChHHHHHHhhc-CCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCc
Q 035643           10 AGELDSRKASPLHLAAAKGYLDIVLKLVSV-NPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTI   88 (159)
Q Consensus        10 ~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~   88 (159)
                      +......|.+.+|+++..++.-++..+++- +... ...|.+|...+|+ |..++.+.+-++....+.....+|..|+||
T Consensus       567 ~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~-~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tp  644 (975)
T KOG0520|consen  567 SSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGD-LELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTP  644 (975)
T ss_pred             cccCCCcchHHHHHHHHHhHHHHHHHHhcccccCc-hhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcc
Confidence            344567899999999999999999999885 4443 3566666667777 555666666666655677777889999999


Q ss_pred             hhhhhhcCChhHHHHHHhhcCCcccccc---ccCCCCCHHHHHHHhCCcceeeeccCC
Q 035643           89 LHACVNYNQLESLRLLVEIRNDHEFVNS---KDDNGSTILHLAVLEKQVEVFYMDFDR  143 (159)
Q Consensus        89 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~---~~~~~~tpl~~a~~~~~~~~~~~ll~~  143 (159)
                      ||+|...|+..++..|++.|+.+..+..   ....|.|+-.+|-..|...+.-+|.+.
T Consensus       645 L~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  645 LHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             cchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            9999999999999999988877543222   334588999999988888888777654

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.47  E-value=1.6e-07  Score=67.55  Aligned_cols=87  Identities=20%  Similarity=0.131  Sum_probs=70.4

Q ss_pred             HHHHHHhCCHHHHHHHHhcCchh---hhhhccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHh
Q 035643           55 LHIAAIRGNVNVLKELVKVRPQA---ALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLE  131 (159)
Q Consensus        55 l~~a~~~~~~~~~~~l~~~~~~~---~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~  131 (159)
                      |.-|....+...+-+|++.+...   ...-+..|+|+||+|+..|++.+.++|+=+|++   +..+|.+|+|+|.||-..
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~d---v~~rda~g~t~l~yar~a  704 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVD---VMARDAHGRTALFYARQA  704 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCcc---ceecccCCchhhhhHhhc
Confidence            34455555666667777744322   223345689999999999999999999999999   899999999999999999


Q ss_pred             CCcceeeeccCCC
Q 035643          132 KQVEVFYMDFDRN  144 (159)
Q Consensus       132 ~~~~~~~~ll~~~  144 (159)
                      |.-+|+.+|+.+|
T Consensus       705 ~sqec~d~llq~g  717 (749)
T KOG0705|consen  705 GSQECIDVLLQYG  717 (749)
T ss_pred             ccHHHHHHHHHcC
Confidence            9999999999984

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.26  E-value=8.9e-07  Score=67.39  Aligned_cols=88  Identities=22%  Similarity=0.245  Sum_probs=70.9

Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHH
Q 035643           49 IDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLA  128 (159)
Q Consensus        49 ~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a  128 (159)
                      ..|.+++|.|+.++..-+.+.|++ ++...+..+..|.+|+|.+...|+...+..++.++++   .+..+..|.+|+.+|
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~-~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~---~~a~~~~~~~~l~~a  729 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQ-NGADVNALDSKGRTPLHHATASGHTSIACLLLKRGAD---PNAFDPDGKLPLDIA  729 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHh-cCCcchhhhccCCCcchhhhhhcccchhhhhcccccc---ccccCccCcchhhHH
Confidence            346788899999888888888888 4455777788888999999988888888888888888   677888888999988


Q ss_pred             HHhCCcceeeec
Q 035643          129 VLEKQVEVFYMD  140 (159)
Q Consensus       129 ~~~~~~~~~~~l  140 (159)
                      +...+.+++-++
T Consensus       730 ~~~~~~d~~~l~  741 (785)
T KOG0521|consen  730 MEAANADIVLLL  741 (785)
T ss_pred             hhhccccHHHHH
Confidence            777666665444

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.18  E-value=3.1e-06  Score=63.62  Aligned_cols=95  Identities=20%  Similarity=0.169  Sum_probs=79.0

Q ss_pred             CCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhh-------
Q 035643            7 PEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAAL-------   79 (159)
Q Consensus         7 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~-------   79 (159)
                      ..++|+.|.-|.++|+.|..+.+.+++..|+++....        -.++.+|+..|..+.++.++. ......       
T Consensus        52 ~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL~aI~~~~v~~VE~ll~-~~~~~~~~~~~~d  122 (822)
T KOG3609|consen   52 KLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALLLAIAVGSVPLVELLLV-HFVDAPYLERSGD  122 (822)
T ss_pred             ccchhccChHhhhceecccccccHHHHHHHhcCcccc--------chHHHHHHHHHHHHHHHHHHh-cccccchhccccc
Confidence            4689999999999999999999999999999987543        258999999999999999987 222221       


Q ss_pred             ---hhccCCCCchhhhhhcCChhHHHHHHhhcCC
Q 035643           80 ---ILMERGVTILHACVNYNQLESLRLLVEIRND  110 (159)
Q Consensus        80 ---~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~  110 (159)
                         ..-..+.||+..|+..++.++++.|+..|+.
T Consensus       123 ~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~  156 (822)
T KOG3609|consen  123 ANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHC  156 (822)
T ss_pred             cCcccCCCCccHHHHHHHhcchHHHHHHHHcCCC
Confidence               1112356999999999999999999999988

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.12  E-value=2.9e-06  Score=64.68  Aligned_cols=97  Identities=23%  Similarity=0.207  Sum_probs=80.8

Q ss_pred             CCCcccc--ccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhcc
Q 035643            6 KPEQAGE--LDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILME   83 (159)
Q Consensus         6 ~~~~~~~--~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~   83 (159)
                      ++..+|.  .-..|.++||.|+..+....+.+|++.++++ +..|..|.+|+|.+...|+......++. ++......+.
T Consensus       643 ~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~v-n~~d~~g~~plh~~~~~g~~~~~~~ll~-~~a~~~a~~~  720 (785)
T KOG0521|consen  643 HGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADV-NALDSKGRTPLHHATASGHTSIACLLLK-RGADPNAFDP  720 (785)
T ss_pred             chhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcc-hhhhccCCCcchhhhhhcccchhhhhcc-ccccccccCc
Confidence            3444554  3366899999999999999999999999996 7999999999999999999999998888 5566667788


Q ss_pred             CCCCchhhhhhcCChhHHHHH
Q 035643           84 RGVTILHACVNYNQLESLRLL  104 (159)
Q Consensus        84 ~~~t~l~~a~~~~~~~~~~~L  104 (159)
                      .|..|+.+|....+.+.+-++
T Consensus       721 ~~~~~l~~a~~~~~~d~~~l~  741 (785)
T KOG0521|consen  721 DGKLPLDIAMEAANADIVLLL  741 (785)
T ss_pred             cCcchhhHHhhhccccHHHHH
Confidence            899999999877666555444

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.05  E-value=3.4e-06  Score=58.25  Aligned_cols=73  Identities=19%  Similarity=0.090  Sum_probs=58.8

Q ss_pred             CcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCC-CCCHHHHHH
Q 035643           52 KNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDN-GSTILHLAV  129 (159)
Q Consensus        52 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~-~~tpl~~a~  129 (159)
                      ..-+..||+.|..+.++.|++ -+.+.+..|+...+||.+|+..|+.+++++|++.|+-    ..+|.. |.-++.-|.
T Consensus        37 f~elceacR~GD~d~v~~LVe-tgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAi----C~rdtf~G~RC~YgaL  110 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVE-TGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAI----CSRDTFDGDRCHYGAL  110 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHH-hCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCc----ccccccCcchhhhhhh
Confidence            457889999999999999999 5566677788889999999999999999999999876    556654 555554443

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.95  E-value=3.1e-05  Score=53.67  Aligned_cols=58  Identities=28%  Similarity=0.252  Sum_probs=48.6

Q ss_pred             CCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCch
Q 035643           18 ASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQ   76 (159)
Q Consensus        18 ~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~   76 (159)
                      +--|+.||+.|+.+.|+.|++.|.++ +..|....+||++|+.-||..++++|++.+..
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnV-N~vD~fD~spL~lAsLcGHe~vvklLLenGAi   94 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNV-NAVDRFDSSPLYLASLCGHEDVVKLLLENGAI   94 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCc-chhhcccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence            33478899999999999999988877 68888888999999999999999999995543

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.89  E-value=3.7e-06  Score=64.46  Aligned_cols=98  Identities=17%  Similarity=0.164  Sum_probs=73.4

Q ss_pred             ecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhcCChhHHHHHHh-hcCCccccccccCCCCCH
Q 035643           46 ARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVE-IRNDHEFVNSKDDNGSTI  124 (159)
Q Consensus        46 ~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~~~tp  124 (159)
                      .....|.+-+|.++..+...+++.+++.-.......+..+...+|.++.. ..+.+-++.. .+..   ++.+|..|+||
T Consensus       569 ~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~l-g~ewA~ll~~~~~~a---i~i~D~~G~tp  644 (975)
T KOG0520|consen  569 SVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAAL-GYEWAFLPISADGVA---IDIRDRNGWTP  644 (975)
T ss_pred             cCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhhc-CCceeEEEEeecccc---cccccCCCCcc
Confidence            45566788999999999999999999852444455566777788885444 4444444433 3344   89999999999


Q ss_pred             HHHHHHhCCcceeeeccCCCccC
Q 035643          125 LHLAVLEKQVEVFYMDFDRNNMD  147 (159)
Q Consensus       125 l~~a~~~~~~~~~~~ll~~~~~~  147 (159)
                      ||+|...|+..++..|.+.+...
T Consensus       645 L~wAa~~G~e~l~a~l~~lga~~  667 (975)
T KOG0520|consen  645 LHWAAFRGREKLVASLIELGADP  667 (975)
T ss_pred             cchHhhcCHHHHHHHHHHhcccc
Confidence            99999999999999998765433

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.68  E-value=0.00012  Score=46.13  Aligned_cols=66  Identities=18%  Similarity=0.087  Sum_probs=58.3

Q ss_pred             eecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhcCChhHHHHHHhhcCC
Q 035643           45 FARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRND  110 (159)
Q Consensus        45 ~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~  110 (159)
                      +.+|..|+|+++.|+..|.-+.+.+|+..+.......+..+.+.+.+|-..|...++..|.+.-.+
T Consensus         6 n~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    6 NARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             cchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            689999999999999999999999999977677777888899999999999999999998876443

>smart00248 ANK ankyrin repeats

Probab=97.51  E-value=0.00024  Score=29.94  Aligned_cols=27  Identities=37%  Similarity=0.604  Sum_probs=19.8

Q ss_pred             CCCCHHHHHHHhCChHHHHHHhhcCCc
Q 035643           16 RKASPLHLAAAKGYLDIVLKLVSVNPE   42 (159)
Q Consensus        16 ~g~t~l~~a~~~~~~~~~~~ll~~~~~   42 (159)
                      .|.||+|+|+..++.++++.+++.+.+
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            367778888877888888877776653

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.39  E-value=8.1e-05  Score=53.29  Aligned_cols=38  Identities=24%  Similarity=0.270  Sum_probs=23.9

Q ss_pred             CCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643          121 GSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus       121 ~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      .-|+||+|+..|.-+++.+||+.+ +|+..+|+.|+|||
T Consensus       430 tsT~LH~aa~qg~~k~v~~~Leeg-~Dp~~kd~~Grtpy  467 (591)
T KOG2505|consen  430 TSTFLHYAAAQGARKCVKYFLEEG-CDPSTKDGAGRTPY  467 (591)
T ss_pred             cchHHHHHHhcchHHHHHHHHHhc-CCchhcccCCCCcc
Confidence            446666666666666666666664 66666666666665

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.13  E-value=0.00026  Score=50.81  Aligned_cols=42  Identities=24%  Similarity=0.302  Sum_probs=37.8

Q ss_pred             CCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHH
Q 035643           85 GVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV  129 (159)
Q Consensus        85 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~  129 (159)
                      -.|+||+|+..|..+++.++|+.+++   ...+|..|+||..++.
T Consensus       430 tsT~LH~aa~qg~~k~v~~~Leeg~D---p~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  430 TSTFLHYAAAQGARKCVKYFLEEGCD---PSTKDGAGRTPYSLSA  471 (591)
T ss_pred             cchHHHHHHhcchHHHHHHHHHhcCC---chhcccCCCCcccccc
Confidence            45889999999999999999999999   7889999999998876

>smart00248 ANK ankyrin repeats

Probab=96.94  E-value=0.0013  Score=27.43  Aligned_cols=21  Identities=33%  Similarity=0.499  Sum_probs=8.9

Q ss_pred             CchhhhhhcCChhHHHHHHhh
Q 035643           87 TILHACVNYNQLESLRLLVEI  107 (159)
Q Consensus        87 t~l~~a~~~~~~~~~~~Ll~~  107 (159)
                      +|+++|+..++.++++.+++.
T Consensus         4 ~~l~~~~~~~~~~~~~~ll~~   24 (30)
T smart00248        4 TPLHLAAENGNLEVVKLLLDK   24 (30)
T ss_pred             CHHHHHHHcCCHHHHHHHHHc
Confidence            444444444444444444443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=94.69  E-value=0.11  Score=28.09  Aligned_cols=47  Identities=19%  Similarity=0.164  Sum_probs=34.1

Q ss_pred             CHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhc
Q 035643           19 SPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV   73 (159)
Q Consensus        19 t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~   73 (159)
                      ..+..|...|+.++++.+++.+...        ...+..|+...+-+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~~~--------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNKPD--------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhccH--------HHHHHHHHHHhhHHHHHHHHHh
Confidence            3567888888888888877644211        3578888888888888888874

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=94.50  E-value=0.28  Score=32.46  Aligned_cols=26  Identities=23%  Similarity=0.438  Sum_probs=12.6

Q ss_pred             CCCCchhhhhhcCChhHHHHHHhhcC
Q 035643           84 RGVTILHACVNYNQLESLRLLVEIRN  109 (159)
Q Consensus        84 ~~~t~l~~a~~~~~~~~~~~Ll~~~~  109 (159)
                      .|.|.|.-|..+++.+++..|+..|+
T Consensus       253 SGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  253 SGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             CcchHHHhHHhcCcHHHHHHHHHcCc
Confidence            34444444444444444444444443

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=93.94  E-value=0.17  Score=33.40  Aligned_cols=114  Identities=13%  Similarity=0.088  Sum_probs=69.8

Q ss_pred             HHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCc----hhhhhhccCCCCchhhhh--hcC
Q 035643           23 LAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRP----QAALILMERGVTILHACV--NYN   96 (159)
Q Consensus        23 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~----~~~~~~~~~~~t~l~~a~--~~~   96 (159)
                      -|+...+++-+..++....+        -.+++.+++..+..+++-+|+..-.    ....+..  +.--+.++.  ...
T Consensus       159 dAV~AsN~~~i~~~VtdKkd--------A~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~~~--~~ydieY~LS~h~a  228 (284)
T PF06128_consen  159 DAVKASNYEEISNLVTDKKD--------AHQAMWLSIGNAKEDVALYLLSKFNFTKQDVASMEK--ELYDIEYLLSEHSA  228 (284)
T ss_pred             HHHhhcCHHHHHHHhcchHH--------HHHHHHHHhcccHHHHHHHHHhhcceecchhhhcCc--chhhHHHHHhhcCC
Confidence            34554555555444432221        2468888888889999999987321    1111111  111233332  234


Q ss_pred             ChhHHHHHHhhc-CCccccccccCCCCCHHHHHHHhCCcceeeeccCCCcc
Q 035643           97 QLESLRLLVEIR-NDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNM  146 (159)
Q Consensus        97 ~~~~~~~Ll~~~-~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~  146 (159)
                      +..++++.++.| .+....-.+-+.|.|-|.-|++.++.+++.+|+.+|+.
T Consensus       229 ~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  229 SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            567888888876 33111112345689999999999999999999999764

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=92.10  E-value=0.65  Score=29.69  Aligned_cols=44  Identities=14%  Similarity=0.081  Sum_probs=23.0

Q ss_pred             hhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeecc
Q 035643           89 LHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDF  141 (159)
Q Consensus        89 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll  141 (159)
                      |..|+..|-...+.-.+.+|.+   ++.      +.|..|+..++-++..+++
T Consensus       147 l~~a~~kgll~F~letlkygg~---~~~------~vls~Av~ynhRkIL~yfi  190 (192)
T PF03158_consen  147 LEKAAAKGLLPFVLETLKYGGN---VDI------IVLSQAVKYNHRKILDYFI  190 (192)
T ss_pred             HHHHHHCCCHHHHHHHHHcCCc---ccH------HHHHHHHHhhHHHHHHHhh
Confidence            4445555555555444555544   332      5666666666555555443

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=89.36  E-value=0.8  Score=24.66  Aligned_cols=47  Identities=21%  Similarity=0.257  Sum_probs=37.8

Q ss_pred             cHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhcCChhHHHHHHhh
Q 035643           53 NPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEI  107 (159)
Q Consensus        53 ~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  107 (159)
                      ..+..|+..|..++++..++.. ...       ...+..|+...+.++++||++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~-~~~-------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKN-KPD-------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHh-ccH-------HHHHHHHHHHhhHHHHHHHHHh
Confidence            5688999999999999888733 111       2468999999999999999984

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=85.12  E-value=2.9  Score=26.87  Aligned_cols=45  Identities=24%  Similarity=0.373  Sum_probs=25.1

Q ss_pred             HHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhcCChhHHHHHHh
Q 035643           55 LHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVE  106 (159)
Q Consensus        55 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~  106 (159)
                      +..|+..|-...+-..+..++....       +.|..|+.+++.+++.+++.
T Consensus       147 l~~a~~kgll~F~letlkygg~~~~-------~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  147 LEKAAAKGLLPFVLETLKYGGNVDI-------IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHCCCHHHHHHHHHcCCcccH-------HHHHHHHHhhHHHHHHHhhc
Confidence            4556666665555444443433321       46666666666666666543

These proteins may be involved in promoting survival of infected macrophages [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	159
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		1e-11
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		3e-09
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		3e-08
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-08
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-08
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		5e-08
2xee_A	157	Structural Determinants For Improved Thermal Stabil		6e-08
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		9e-08
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-07
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		2e-07
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-07
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		4e-07
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		6e-07
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		7e-07
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		8e-07
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		9e-07
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-06
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-06
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-06
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		4e-06
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		5e-06
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		5e-06
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		5e-06
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		6e-06
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		8e-06
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		1e-05
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		8e-06
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		1e-05
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		2e-05
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		3e-05
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		3e-05
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		4e-05
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		5e-05
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		1e-04
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		2e-04
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		2e-04
1uoh_A	226	Human Gankyrin Length = 226		2e-04
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		2e-04
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		3e-04
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		4e-04
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		5e-04
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		5e-04
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		6e-04
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		8e-04

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 68/121 (56%), Gaps = 5/121 (4%)
Query: 19  SPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAA 78
           +PLHLAA  G+L++V  L+    ++  A+D +G+ PLH+AA  G++ V+K L++      
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 79  LILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFY 138
               + G T LH       LE ++LL+E   D   VN+KD NG T LHLA     +EV  
Sbjct: 63  -AKDKNGRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEVVK 118
Query: 139 M 139
           +
Sbjct: 119 L 119

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 11/121 (9%)
Query: 19  SPLHLAAAKGYLDIVLKLVSVN-PEMCFARDIDGKNPLHIAAIRGNVNVLKELVK--VRP 75
           +PLH+AA +G+++ VL L+     + C  +   G  PLH+AA  G V V + L++    P
Sbjct: 115 TPLHIAAREGHVETVLALLEKEASQACMTKK--GFTPLHVAAKYGKVRVAELLLERDAHP 172
Query: 76  QAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVE 135
            AA    + G+T LH  V++N L+ ++LL+         +S   NG T LH+A  + QVE
Sbjct: 173 NAA---GKNGLTPLHVAVHHNNLDIVKLLLPRGGS---PHSPAWNGYTPLHIAAKQNQVE 226
Query: 136 V 136
           V
Sbjct: 227 V 227

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 5/118 (4%)
Query: 19  SPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAA 78
           +PLHLAA +G+L+IV  L+    ++  A+D DG  PLH+AA  G++ +++ L+K      
Sbjct: 37  TPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 95
Query: 79  LILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
               + G T LH       LE + +L++   D   VN++D  G T   LA+ E   ++
Sbjct: 96  AKDKD-GYTPLHLAAREGHLEIVEVLLKAGAD---VNAQDKFGKTPFDLAIREGHEDI 149

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 62/128 (48%), Gaps = 9/128 (7%)
Query: 14  DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK- 72
           DS   +PLHLAA  G+ ++V  L+S   +   A+D DGK PLH+AA  G+  V+K L+  
Sbjct: 34  DSDGKTPLHLAAENGHKEVVKLLLSQGAD-PNAKDSDGKTPLHLAAENGHKEVVKLLLSQ 92
Query: 73  -VRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLE 131
              P A       G T LH        E ++LL+    D    N+ D +G T L LA   
Sbjct: 93  GADPNAK---DSDGKTPLHLAAENGHKEVVKLLLSQGAD---PNTSDSDGRTPLDLAREH 146
Query: 132 KQVEVFYM 139
              EV  +
Sbjct: 147 GNEEVVKL 154

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 59/115 (51%), Gaps = 5/115 (4%)
Query: 14  DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
           DS   +PLH AA +G+ +IV  L+S   ++  A+D DG+ PLH AA  G+  ++K L+  
Sbjct: 34  DSDGRTPLHYAAKEGHKEIVKLLISKGADVN-AKDSDGRTPLHYAAKEGHKEIVKLLISK 92
Query: 74  RPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLA 128
                    + G T LH        E ++LL+    D   VN+ D +G T L LA
Sbjct: 93  GADVNAKDSD-GRTPLHYAAKEGHKEIVKLLISKGAD---VNTSDSDGRTPLDLA 143

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 66/120 (55%), Gaps = 13/120 (10%)
Query: 14  DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK- 72
           D + ++PLHLAA  G+ +IV  L+    ++  ARD DG  PLH+AA  G++ +++ L+K 
Sbjct: 44  DDQGSTPLHLAAWIGHPEIVEVLLKHGADVN-ARDTDGWTPLHLAADNGHLEIVEVLLKY 102
Query: 73  ---VRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV 129
              V  Q A      G+T LH   +   LE + +L++   D   VN++D  G T   +++
Sbjct: 103 GADVNAQDAY-----GLTPLHLAADRGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 154

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 61/111 (54%), Gaps = 5/111 (4%)
Query: 19  SPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAA 78
           +PLHLAA +G+L+IV  L+    ++  A+D DG  PLH+AA  G++ +++ L+K      
Sbjct: 37  TPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 95
Query: 79  LILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV 129
               + G T LH       LE + +L++   D   VN++D  G T   LA+
Sbjct: 96  AKDKD-GYTPLHLAAREGHLEIVEVLLKAGAD---VNAQDKFGKTPFDLAI 142

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 52.8 bits (125), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 64/117 (54%), Gaps = 5/117 (4%)
Query: 13  LDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK 72
           +D+   +PLHLAA  G+L+IV  L+    ++  A D+ G  PLH+AA+ G++ +++ L+K
Sbjct: 43  VDNTGLTPLHLAAVSGHLEIVEVLLKHGADVD-AADVYGFTPLHLAAMTGHLEIVEVLLK 101
Query: 73  VRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV 129
                    M  G T LH   +   LE + +L++   D   VN++D  G T   +++
Sbjct: 102 YGADVNAFDM-TGSTPLHLAADEGHLEIVEVLLKYGAD---VNAQDKFGKTAFDISI 154

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 64/128 (50%), Gaps = 9/128 (7%)
Query: 14  DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
           DS   +PLH AA  G+ ++V  L+S   ++  A+D DG+ PLH AA  G+  V+K L+  
Sbjct: 34  DSDGRTPLHHAAENGHKEVVKLLISKGADVN-AKDSDGRTPLHHAAENGHKEVVKLLI-- 90
Query: 74  RPQAALILME--RGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLE 131
             + A +  +   G T LH        E ++LL+    D   VN+ D +G T L LA   
Sbjct: 91  -SKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD---VNTSDSDGRTPLDLAREH 146
Query: 132 KQVEVFYM 139
              EV  +
Sbjct: 147 GNEEVVKL 154

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 61/111 (54%), Gaps = 5/111 (4%)
Query: 19  SPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAA 78
           +PLHLAA +G+L+IV  L+    ++  A+D DG  PLH+AA  G++ +++ L+K      
Sbjct: 49  TPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 107
Query: 79  LILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV 129
               + G T LH       LE + +L++   D   VN++D  G T   +++
Sbjct: 108 AKDKD-GYTPLHLAAREGHLEIVEVLLKAGAD---VNAQDKFGKTAFDISI 154

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 66/117 (56%), Gaps = 7/117 (5%)
Query: 14  DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
           D+   +PLHLAA  G+L+IV  L+    ++  A D+ G  PLH+AA  G++ +++ L+K 
Sbjct: 44  DNTGTTPLHLAAYSGHLEIVEVLLKHGADVD-ASDVFGYTPLHLAAYWGHLEIVEVLLK- 101
Query: 74  RPQAALILMER-GVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV 129
              A +  M+  G+T LH    +  LE + +L++   D   VN++D  G T   +++
Sbjct: 102 -NGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 154

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 5/116 (4%)
Query: 14  DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
           D+   +PLHLAA+ G+L+IV  L+  N     A D+ G  PLH+AA  G++ +++ L+K 
Sbjct: 44  DNDGYTPLHLAASNGHLEIVEVLLK-NGADVNASDLTGITPLHLAAATGHLEIVEVLLKH 102
Query: 74  RPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV 129
                      G T LH    Y  LE + +L++   D   VN++D  G T   +++
Sbjct: 103 GADVN-AYDNDGHTPLHLAAKYGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 154

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 12/118 (10%)
Query: 23  LAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK----VRPQAA 78
           L AA+   D  ++++  N     A D+ G  PLH+AA  G++ +++ L+K    V     
Sbjct: 19  LEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDT 78
Query: 79  LILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
           L     G T LH   ++  LE + +L++   D   VN+KDDNG T LHLA     +E+
Sbjct: 79  L-----GSTPLHLAAHFGHLEIVEVLLKNGAD---VNAKDDNGITPLHLAANRGHLEI 128

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 13/120 (10%)
Query: 14  DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK- 72
           D+   +PLHLAA  G+L+IV  L+  N     A D  G  PLH+AA RG++ +++ L+K 
Sbjct: 44  DTYGDTPLHLAARVGHLEIVEVLLK-NGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKY 102
Query: 73  ---VRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV 129
              V     +     G T LH   +   LE + +L++   D   VN++D  G T   +++
Sbjct: 103 GADVNADDTI-----GSTPLHLAADTGHLEIVEVLLKYGAD---VNAQDKFGKTAFDISI 154

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 67/132 (50%), Gaps = 13/132 (9%)
Query: 2   ILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIR 61
           IL      A   D    +PLH+AAA G+L+IV  L+  N     A D +G  PLH+AA  
Sbjct: 20  ILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLR-NGADVNAVDTNGTTPLHLAASL 78
Query: 62  GNVNVLKELVK----VRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSK 117
           G++ +++ L+K    V  + A      G+T L+    +  LE + +L++   D   VN++
Sbjct: 79  GHLEIVEVLLKYGADVNAKDA-----TGITPLYLAAYWGHLEIVEVLLKHGAD---VNAQ 130
Query: 118 DDNGSTILHLAV 129
           D  G T   +++
Sbjct: 131 DKFGKTAFDISI 142

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 5/116 (4%)
Query: 14  DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
           D    +PLHLAA KG+L+IV  L+    ++  A D  G  PLH+AA+ G++ +++ L+K 
Sbjct: 44  DDSGKTPLHLAAIKGHLEIVEVLLKHGADVN-AADKMGDTPLHLAALYGHLEIVEVLLKN 102
Query: 74  RPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV 129
                      G T LH   +   LE + +L++   D   VN++D  G T   +++
Sbjct: 103 GADVNAT-DTYGFTPLHLAADAGHLEIVEVLLKYGAD---VNAQDKFGKTAFDISI 154

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 38/121 (31%)
Query: 19  SPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAA 78
           +PLHLAA  G+L++V  L+    ++  A+D +G+ PLH+AA  G++ V+K          
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVK---------- 52
Query: 79  LILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFY 138
            +L+E G                            VN+KD NG T LHLA     +EV  
Sbjct: 53  -LLLEAGAD--------------------------VNAKDKNGRTPLHLAARNGHLEVVK 85
Query: 139 M 139
           +
Sbjct: 86  L 86

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 60/128 (46%), Gaps = 9/128 (7%)
Query: 14  DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK- 72
           DS   +PLH AA  G+ +IV  L+S   +   A+D DG+ PLH AA  G+  ++K L+  
Sbjct: 34  DSDGRTPLHYAAENGHKEIVKLLLSKGAD-PNAKDSDGRTPLHYAAENGHKEIVKLLLSK 92
Query: 73  -VRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLE 131
              P A       G T LH        E ++LL+    D    N+ D +G T L LA   
Sbjct: 93  GADPNAK---DSDGRTPLHYAAENGHKEIVKLLLSKGAD---PNTSDSDGRTPLDLAREH 146
Query: 132 KQVEVFYM 139
              E+  +
Sbjct: 147 GNEEIVKL 154

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 5/116 (4%)
Query: 14  DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
           D+   +PLHLAA  G+L+IV  L+    ++  A DI G  PLH+AA+ G++ +++ L+K 
Sbjct: 44  DASGLTPLHLAATYGHLEIVEVLLKHGADVN-AIDIXGSTPLHLAALIGHLEIVEVLLKH 102
Query: 74  RPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV 129
                 +    G T LH       LE + +L++   D   VN++D  G T   +++
Sbjct: 103 GADVNAV-DTWGDTPLHLAAIMGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 154

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 5/116 (4%)
Query: 14  DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
           D+   +PLHLAA  G+L+IV  L+    ++  A DI G  PLH+AA+ G++ +++ L+K 
Sbjct: 44  DASGLTPLHLAATYGHLEIVEVLLKHGADVN-AIDIMGSTPLHLAALIGHLEIVEVLLKH 102
Query: 74  RPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV 129
                 +    G T LH       LE + +L++   D   VN++D  G T   +++
Sbjct: 103 GADVNAV-DTWGDTPLHLAAIMGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 154

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 12/118 (10%)
Query: 23  LAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK----VRPQAA 78
           L AA+   D  ++++  N     ARD  G  PLH+AA  G++ +++ L+K    V  + +
Sbjct: 19  LEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDS 78
Query: 79  LILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
           L     GVT LH       LE + +L++   D   VN+ D +G T LHLA     +E+
Sbjct: 79  L-----GVTPLHLAARRGHLEIVEVLLKNGAD---VNASDSHGFTPLHLAAKRGHLEI 128

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 58/111 (52%), Gaps = 5/111 (4%)
Query: 19  SPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAA 78
           +PLHL    G+L+I+  L+    ++  A D  G  PLH+AA RG++ +++ L+K      
Sbjct: 49  TPLHLVVNNGHLEIIEVLLKYAADVN-ASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVN 107
Query: 79  LILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV 129
             +  +G T LH       LE + +L++   D   VN++D  G T   +++
Sbjct: 108 -AMDYQGYTPLHLAAEDGHLEIVEVLLKYGAD---VNAQDKFGKTAFDISI 154

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 7/121 (5%)
Query: 14  DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
           D    +PLHLAAA G L+IV  L+  N     A D  G  PLH+AA  G++ +++ L+K 
Sbjct: 36  DDNGLTPLHLAAANGQLEIVEVLLK-NGADVNASDSAGITPLHLAAYDGHLEIVEVLLK- 93
Query: 74  RPQAALILMER-GVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEK 132
              A +   +R G T LH      QLE + +L++   D   VN++D  G T   +++ + 
Sbjct: 94  -HGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGAD---VNAQDALGLTAFDISINQG 149
Query: 133 Q 133
           Q
Sbjct: 150 Q 150

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 13  LDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK 72
           +D    +PLHLAA +G+L+IV  L+    ++  ARDI G+ PLH+AA  G++ +++ L++
Sbjct: 43  MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN-ARDIWGRTPLHLAATVGHLEIVEVLLE 101

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 1   EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
           E+L +        D+  A+PLHLAA  G+L+IV  L+    ++  A+D +G  PLH+AA 
Sbjct: 64  EVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVN-AKDYEGFTPLHLAAY 122
Query: 61  RGNVNVLKELVK 72
            G++ +++ L+K
Sbjct: 123 DGHLEIVEVLLK 134

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 58/111 (52%), Gaps = 5/111 (4%)
Query: 19  SPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAA 78
           +PLHLAA  G+L+IV  L+    ++  A D  G  PLH+AA  G++ +++ L+K      
Sbjct: 49  TPLHLAAKTGHLEIVEVLLKYGADVN-AWDNYGATPLHLAADNGHLEIVEVLLKHGADVN 107
Query: 79  LILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV 129
               E G T LH       LE + +L++   D   VN++D  G T   +++
Sbjct: 108 AKDYE-GFTPLHLAAYDGHLEIVEVLLKYGAD---VNAQDKFGKTAFDISI 154

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 58/111 (52%), Gaps = 5/111 (4%)
Query: 19  SPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAA 78
           +PLHLAA  G+L+IV  L+  N     A D  G  PLH+AA RG++ V++ L+K      
Sbjct: 49  TPLHLAAYFGHLEIVEVLLK-NGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVN 107
Query: 79  LILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV 129
                 G T LH   N   LE + +L++   D   VN++D  G T   +++
Sbjct: 108 -ANDHNGFTPLHLAANIGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 154

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 5/116 (4%)
Query: 14  DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
           D+   +PLHLAA  G+L+IV  L+  N     A D  G  PL +AA+ G++ +++ L+K 
Sbjct: 44  DASGWTPLHLAAFNGHLEIVEVLLK-NGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKN 102
Query: 74  RPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV 129
                   ME G T LH    +  LE + +L++   D   VN++D  G T   +++
Sbjct: 103 GADVNANDME-GHTPLHLAAMFGHLEIVEVLLKNGAD---VNAQDKFGKTAFDISI 154

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 68/155 (43%), Gaps = 23/155 (14%)
Query: 17  KASPLHLAAAKGYLDIVLKLV--SVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK-- 72
           K SPLH AA  G++DI   LV    N + C     D + PL  AA   ++  +K L+K  
Sbjct: 11  KRSPLHAAAEAGHVDICHMLVQAGANIDTCSE---DQRTPLMEAAENNHLEAVKYLIKAG 67
Query: 73  --VRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVL 130
             V P+ A      G T LH        E ++ L  + N    VN +DD G T +  A  
Sbjct: 68  ALVDPKDA-----EGSTCLHLAAKKGHYEVVQYL--LSNGQMDVNCQDDGGWTPMIWATE 120
Query: 131 EKQVEVFYM------DFD-RNNMDNNIFYGCGLSG 158
            K V++  +      D + R+N +N   +    SG
Sbjct: 121 YKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSG 155

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 7/123 (5%)
Query: 18  ASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQA 77
           +SPLH+AA  G  D++  L+        AR+ D   PLH+A  +G+  V+K L+    + 
Sbjct: 87  SSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSNAKP 145
Query: 78  ALILMERGVTILHACVN-YNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
               +     +++AC   +++L +L L          +N+ ++ G+T LH AV+EK V V
Sbjct: 146 NKKDLSGNTPLIYACSGGHHELVALLL-----QHGASINASNNKGNTALHEAVIEKHVFV 200
Query: 137 FYM 139
             +
Sbjct: 201 VEL 203

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 13  LDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK 72
           LD    +PLHLAA  G+L+IV  L+    ++  A D  G  PLH+AAIRG++ +++ L+K
Sbjct: 43  LDEDGLTPLHLAAQLGHLEIVEVLLKYGADVN-AEDNFGITPLHLAAIRGHLEIVEVLLK 101

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 13  LDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK 72
           +D    +PLHLAA +G+L+IV  L+    ++  A DI G+ PLH+AA  G++ +++ L++
Sbjct: 43  MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN-ASDIWGRTPLHLAATVGHLEIVEVLLE 101

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 25/132 (18%)
Query: 19  SPLHLAAAKGYLDIVLKLVSVNPEMCF----ARDIDGKNPLHIAAIRGNVNVLKELVK-- 72
           + LH+AA    L+  + L+   PE+ F    +   +G+  LHIA I  NVN+++ L+   
Sbjct: 39  TALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARG 98
Query: 73  -------------VRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDD 119
                         RP   +   E  ++   ACV   ++  +RLL+E   D   + ++D 
Sbjct: 99  ASVSARATGSVFHYRPHNLIYYGEHPLSFA-ACVGSEEI--VRLLIEHGAD---IRAQDS 152
Query: 120 NGSTILHLAVLE 131
            G+T+LH+ +L+
Sbjct: 153 LGNTVLHILILQ 164

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 58/122 (47%), Gaps = 16/122 (13%)
Query: 17  KASPLHLAAAKGYLDIVLKLVSV--NPEMCFARDIDGKNPLHIAAIRG---NVNVLKELV 71
           + +PLHLA      +I   L+    +PE+   RD  G  PLH+A  +G   +V VL +  
Sbjct: 45  QQTPLHLAVITNQPEIAEALLGAGCDPEL---RDFRGNTPLHLACEQGCLASVGVLTQSC 101
Query: 72  KVRPQAALILMER---GVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDD-NGSTILHL 127
              P    IL      G T LH    +  L  + LLV +  D   VN+++  NG T LHL
Sbjct: 102 TT-PHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD---VNAQEPCNGRTALHL 157
Query: 128 AV 129
           AV
Sbjct: 158 AV 159

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 58/122 (47%), Gaps = 16/122 (13%)
Query: 17  KASPLHLAAAKGYLDIVLKLVSV--NPEMCFARDIDGKNPLHIAAIRG---NVNVLKELV 71
           + +PLHLA      +I   L+    +PE+   RD  G  PLH+A  +G   +V VL +  
Sbjct: 42  QQTPLHLAVITNQPEIAEALLGAGCDPEL---RDFRGNTPLHLACEQGCLASVGVLTQSC 98
Query: 72  KVRPQAALILMER---GVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDD-NGSTILHL 127
              P    IL      G T LH    +  L  + LLV +  D   VN+++  NG T LHL
Sbjct: 99  TT-PHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD---VNAQEPCNGRTALHL 154
Query: 128 AV 129
           AV
Sbjct: 155 AV 156

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 13  LDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK 72
           +D    +PLHLAA +G+L+IV  L+    ++  A D  G+ PLH+AA  G++ +++ L++
Sbjct: 43  MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN-ASDSWGRTPLHLAATVGHLEIVEVLLE 101

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 25/132 (18%)
Query: 14  DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
           D    SPLH+AA+ G  +IV  L+    ++  A + +G  PLH AA            K 
Sbjct: 70  DDAGWSPLHIAASAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAA-----------SKN 117
Query: 74  RPQAALILMERGV----------TILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGST 123
           R + A++L+E G           T +H       L+ + +L+  +      N +D  G+T
Sbjct: 118 RHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAS---TNIQDTEGNT 174
Query: 124 ILHLAVLEKQVE 135
            LHLA  E++VE
Sbjct: 175 PLHLACDEERVE 186

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 25/132 (18%)
Query: 14  DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
           D    SPLH+AA+ G  +IV  L+    ++  A + +G  PLH AA            K 
Sbjct: 71  DDAGWSPLHIAASAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAA-----------SKN 118
Query: 74  RPQAALILMERGV----------TILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGST 123
           R + A++L+E G           T +H       L+ + +L+  +      N +D  G+T
Sbjct: 119 RHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAS---TNIQDTEGNT 175
Query: 124 ILHLAVLEKQVE 135
            LHLA  E++VE
Sbjct: 176 PLHLACDEERVE 187

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 51  GKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRND 110
           G   LH+AA +G   VLK L++ R    +   + G T LHA  ++ + E+ R+LVE   D
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYD-GWTPLHAAAHWGKEEACRILVENLCD 257
Query: 111 HEFVN 115
            E VN
Sbjct: 258 MEAVN 262

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 14  DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK 72
           D +  +PLHLAA   +L+IV  L+    ++  A D DG  PLH+AA+ G++ +++ L+K
Sbjct: 44  DRKGNTPLHLAADYDHLEIVEVLLKHGADVN-AHDNDGSTPLHLAALFGHLEIVEVLLK 101

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 25/132 (18%)
Query: 14  DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
           D    SPLH+AA+ G  +IV  L+ V      A + +G  PLH AA            K 
Sbjct: 70  DDAGWSPLHIAASAGXDEIVKALL-VKGAHVNAVNQNGCTPLHYAA-----------SKN 117
Query: 74  RPQAALILMERGV----------TILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGST 123
           R + A++L+E G           T +H       L+ + +L+  +      N +D  G+T
Sbjct: 118 RHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS---TNIQDTEGNT 174
Query: 124 ILHLAVLEKQVE 135
            LHLA  E++VE
Sbjct: 175 PLHLACDEERVE 186

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 25/132 (18%)
Query: 14  DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
           D    SPLH+AA+ G  +IV  L+ V      A + +G  PLH AA            K 
Sbjct: 70  DDAGWSPLHIAASAGRDEIVKALL-VKGAHVNAVNQNGCTPLHYAA-----------SKN 117
Query: 74  RPQAALILMERGV----------TILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGST 123
           R + A++L+E G           T +H       L+ + +L+  +      N +D  G+T
Sbjct: 118 RHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS---TNIQDTEGNT 174
Query: 124 ILHLAVLEKQVE 135
            LHLA  E++VE
Sbjct: 175 PLHLACDEERVE 186

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 14  DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
           D    SPLHLAA  G+      L+           +D + PLH+AA  G+ N+++ L+K 
Sbjct: 31  DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD-RTPLHMAASEGHANIVEVLLKH 89
Query: 74  RPQAALILMERGVTILHACVNYNQLESLRLLVEIRND 110
                   M + +T LH    +N  E + LL++   D
Sbjct: 90  GADVNAKDMLK-MTALHWATEHNHQEVVELLIKYGAD 125

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 19 SPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELV 71
          +PLH AA  G+ + V KL+S   ++  AR  DG  PLH+AA  G+  ++K L+
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVN-ARSKDGNTPLHLAAKNGHAEIVKLLL 62

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	159
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-18
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-16
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-13
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-09
2rfa_A	232	Transient receptor potential cation channel subfa	2e-18
2rfa_A	232	Transient receptor potential cation channel subfa	7e-13
2rfa_A	232	Transient receptor potential cation channel subfa	4e-11
2rfa_A	232	Transient receptor potential cation channel subfa	2e-05
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-18
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-16
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-08
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-18
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-17
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-17
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-17
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-15
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-17
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-15
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-15
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-14
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-14
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-13
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-12
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-09
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-17
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-15
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-14
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-12
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-11
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-10
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-07
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-06
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-17
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-09
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-09
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-09
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-17
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-10
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-09
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-17
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-16
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-16
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-06
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-17
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-16
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-15
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-13
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-08
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-08
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-16
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-16
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-15
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	8e-12
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-16
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-15
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-14
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-11
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-09
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-16
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-10
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-08
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-16
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	9e-16
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-08
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-08
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-16
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-16
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-16
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-15
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-11
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-16
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-14
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-13
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-12
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-12
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-08
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-08
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-06
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-16
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-15
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-14
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-13
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-09
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-08
2etb_A	256	Transient receptor potential cation channel subfam	3e-16
2etb_A	256	Transient receptor potential cation channel subfam	3e-13
2etb_A	256	Transient receptor potential cation channel subfam	3e-07
2etb_A	256	Transient receptor potential cation channel subfam	5e-07
2etb_A	256	Transient receptor potential cation channel subfam	2e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-16
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-16
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-15
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-15
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-12
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-16
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-16
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-12
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-08
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-16
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-11
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-10
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-16
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-14
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-07
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-16
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-14
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-13
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-13
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-13
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-09
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-05
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	9e-16
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-15
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-12
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-09
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-15
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-14
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-08
2pnn_A	273	Transient receptor potential cation channel subfa	2e-15
2pnn_A	273	Transient receptor potential cation channel subfa	2e-10
2pnn_A	273	Transient receptor potential cation channel subfa	5e-07
2pnn_A	273	Transient receptor potential cation channel subfa	7e-07
2pnn_A	273	Transient receptor potential cation channel subfa	7e-07
2pnn_A	273	Transient receptor potential cation channel subfa	4e-05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-15
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	7e-15
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-12
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-08
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-15
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-15
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-14
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-12
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-15
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-14
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-13
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-09
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-15
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-14
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-13
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-12
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-11
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-15
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-09
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-06
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-15
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-14
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-14
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-11
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-05
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-15
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-09
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-15
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-14
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	9e-10
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-15
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-07
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-07
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-15
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-14
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-12
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-09
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-07
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-15
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-14
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-10
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-08
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	8e-15
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-10
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-08
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-07
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-14
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-14
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-13
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-12
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-12
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-11
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-08
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-14
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-09
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	6e-08
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-14
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-14
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-11
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-10
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-09
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-14
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-12
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-09
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-08
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	9e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-14
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-11
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-06
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-05
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-14
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-12
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-10
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-13
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-10
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	5e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-05
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-12
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	7e-11
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-10
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-11
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-09
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-10
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-09
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-05
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	6e-10
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	9e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	5e-06
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-04
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-05

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 76.3 bits (189), Expect = 2e-18
 Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 8/119 (6%)

Query: 20  PLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAAL 79
            +H  AA+G LD + + +     +    D  G  PL  A+  G +  ++ L++     A 
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLE---WGAD 61

Query: 80  I--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
              L +   + L         + + LL+E   D   +N  D NG T L  AV    V+ 
Sbjct: 62  PHILAKERESALSLASTGGYTDIVGLLLERDVD---INIYDWNGGTPLLYAVRGNHVKC 117

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 70.5 bits (174), Expect = 3e-16
 Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 29/129 (22%)

Query: 20  PLHLAAAKGYLDIVLKLVSV--NPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQA 77
           PL  A+A G ++ V  L+    +P        + ++ L +A+  G      ++V      
Sbjct: 39  PLIWASAFGEIETVRFLLEWGADPH---ILAKERESALSLASTGGY----TDIVG----- 86

Query: 78  ALILMERGVTI----------LHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHL 127
             +L+ER V I          L   V  N ++ +  L+    D   + ++ D+G T + L
Sbjct: 87  --LLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGAD---LTTEADSGYTPMDL 141

Query: 128 AVLEKQVEV 136
           AV     +V
Sbjct: 142 AVALGYRKV 150

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 62.4 bits (153), Expect = 4e-13
 Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 13/109 (11%)

Query: 19  SPLHLAAAKGYLDIVLKLVS--VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQ 76
           S L LA+  GY DIV  L+   V+       D +G  PL  A    +V  ++ L+    +
Sbjct: 71  SALSLASTGGYTDIVGLLLERDVDIN---IYDWNGGTPLLYAVRGNHVKCVEALLA---R 124

Query: 77  AALI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGST 123
            A +    + G T +   V     +  +++         +   +   + 
Sbjct: 125 GADLTTEADSGYTPMDLAVALGYRKVQQVIENHILK---LFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 52.4 bits (127), Expect = 2e-09
 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 3/86 (3%)

Query: 51  GKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRND 110
               +H  A +G ++ LKE ++          ERG T L     + ++E++R L+E   D
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 111 HEFVNSKDDNGSTILHLAVLEKQVEV 136
               +       + L LA      ++
Sbjct: 62  ---PHILAKERESALSLASTGGYTDI 84

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 77.6 bits (192), Expect = 2e-18
 Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 19/133 (14%)

Query: 20  PLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK--- 72
            LH+AA    L+  + L+     +  E   +   +G+  LHIA I  NVN+++ L+    
Sbjct: 40  ALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGA 99

Query: 73  ---------VRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGST 123
                    V       L+  G   L         E +RLL+E   D   + ++D  G+T
Sbjct: 100 SVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD---IRAQDSLGNT 156

Query: 124 ILHLAVLEKQVEV 136
           +LH+ +L+     
Sbjct: 157 VLHILILQPNKTF 169

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 63.0 bits (154), Expect = 7e-13
 Identities = 32/137 (23%), Positives = 49/137 (35%), Gaps = 24/137 (17%)

Query: 19  SPLHLAAAKGYLDIVLKL-----VSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK- 72
           SPL LAA +  +  + KL       V+      R   G+  LHIAA+  N+     L++ 
Sbjct: 5   SPLLLAAKENDVQALSKLLKFEGCEVH-----QRGAMGETALHIAALYDNLEAAMVLMEA 59

Query: 73  ---VRPQAALILMERGVTILHACVNYNQLESLRLL------VEIRND----HEFVNSKDD 119
              +  +     +  G T LH  V    +  +R L      V  R      H   ++   
Sbjct: 60  APELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIY 119

Query: 120 NGSTILHLAVLEKQVEV 136
            G   L  A      E+
Sbjct: 120 YGEHPLSFAACVGSEEI 136

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 10/67 (14%), Positives = 25/67 (37%), Gaps = 9/67 (13%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLVSV---------NPEMCFARDIDGKNPLHIAAIRGNV 64
           DS   + LH+   +       ++ ++            +    +  G  P  +A + GN+
Sbjct: 151 DSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNI 210

Query: 65  NVLKELV 71
            + + L+
Sbjct: 211 VMFQHLM 217

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 75.1 bits (186), Expect = 5e-18
 Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 17/123 (13%)

Query: 20  PLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRP 75
            +H  AA+G +  +   +     +N       D +G  PL  AA  G + V++ L++   
Sbjct: 6   SVHQLAAQGEMLYLATRIEQENVIN-----HTDEEGFTPLMWAAAHGQIAVVEFLLQ--- 57

Query: 76  QAALI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQ 133
             A    L +   + L    +    + +++L++   D   VN  D NG T L  AV    
Sbjct: 58  NGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVD---VNEYDWNGGTPLLYAVHGNH 114

Query: 134 VEV 136
           V+ 
Sbjct: 115 VKC 117

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 70.1 bits (173), Expect = 5e-16
 Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 13/121 (10%)

Query: 20  PLHLAAAKGYLDIVLKLVSV--NPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQA 77
           PL  AAA G + +V  L+    +P+         ++ L +A  +G  +++K L+      
Sbjct: 39  PLMWAAAHGQIAVVEFLLQNGADPQ---LLGKGRESALSLACSKGYTDIVKMLLDCG--- 92

Query: 78  ALI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVE 135
             +      G T L   V+ N ++ +++L+E   D      + D+G   + LAV      
Sbjct: 93  VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD---PTIETDSGYNSMDLAVALGYRS 149

Query: 136 V 136
           V
Sbjct: 150 V 150

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 50.5 bits (122), Expect = 1e-08
 Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 8/89 (8%)

Query: 50  DGKNPLHIAAIRGNVNVLKELVKVRPQAALI--LMERGVTILHACVNYNQLESLRLLVEI 107
                +H  A +G +  L   ++   Q  +I    E G T L     + Q+  +  L++ 
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIE---QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN 58

Query: 108 RNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
             D            + L LA  +   ++
Sbjct: 59  GAD---PQLLGKGRESALSLACSKGYTDI 84

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 77.9 bits (193), Expect = 8e-18
 Identities = 40/129 (31%), Positives = 64/129 (49%), Gaps = 17/129 (13%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKE 69
            +   +PLH+AA +G+++ VL L+                 G  PLH+AA  G V V + 
Sbjct: 110 TTAGHTPLHIAAREGHVETVLALLEKEASQA-----CMTKKGFTPLHVAAKYGKVRVAEL 164

Query: 70  LVKVRPQAALILM--ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHL 127
           L++   + A      + G+T LH  V++N L+ ++LL+         +S   NG T LH+
Sbjct: 165 LLE---RDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS---PHSPAWNGYTPLHI 218

Query: 128 AVLEKQVEV 136
           A  + QVEV
Sbjct: 219 AAKQNQVEV 227

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 76.4 bits (189), Expect = 4e-17
 Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 13/122 (10%)

Query: 19  SPLHLAAAKGYLDIVLKLVS--VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQ 76
           +PLH+A     LDIV  L+    +P    +   +G  PLHIAA +  V V + L++    
Sbjct: 181 TPLHVAVHHNNLDIVKLLLPRGGSPH---SPAWNGYTPLHIAAKQNQVEVARSLLQ---Y 234

Query: 77  AALI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQV 134
                    +GVT LH        E + LL+  + +    N  + +G T LHL   E  V
Sbjct: 235 GGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN---GNLGNKSGLTPLHLVAQEGHV 291

Query: 135 EV 136
            V
Sbjct: 292 PV 293

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 76.0 bits (188), Expect = 4e-17
 Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 17/129 (13%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKE 69
             +  +PLHLAA +G+ ++V  L+S     N       +  G  PLH+ A  G+V V   
Sbjct: 242 SVQGVTPLHLAAQEGHAEMVALLLSKQANGN-----LGNKSGLTPLHLVAQEGHVPVADV 296

Query: 70  LVKVRPQAALI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHL 127
           L+K      ++      G T LH   +Y  ++ ++ L++ + D   VN+K   G + LH 
Sbjct: 297 LIK---HGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD---VNAKTKLGYSPLHQ 350

Query: 128 AVLEKQVEV 136
           A  +   ++
Sbjct: 351 AAQQGHTDI 359

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 76.0 bits (188), Expect = 5e-17
 Identities = 35/129 (27%), Positives = 54/129 (41%), Gaps = 17/129 (13%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKE 69
                +PLH+A+  G+L IV  L+      N       ++  + PLH+AA  G+  V K 
Sbjct: 11  GESGLTPLHVASFMGHLPIVKNLLQRGASPN-----VSNVKVETPLHMAARAGHTEVAKY 65

Query: 70  LVKVRPQAALI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHL 127
           L++     A +    +   T LH          ++LL+E   +    N     G T LH+
Sbjct: 66  LLQ---NKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN---PNLATTAGHTPLHI 119

Query: 128 AVLEKQVEV 136
           A  E  VE 
Sbjct: 120 AAREGHVET 128

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 74.5 bits (184), Expect = 1e-16
 Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 17/129 (13%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKE 69
                +PLH AA  G+ ++V  L+      N          G  PLHIAA  G+V  +  
Sbjct: 77  AKDDQTPLHCAARIGHTNMVKLLLENNANPN-----LATTAGHTPLHIAAREGHVETVLA 131

Query: 70  LVKVRPQAALI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHL 127
           L++   + A    + ++G T LH    Y ++    LL+E        N+   NG T LH+
Sbjct: 132 LLE---KEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH---PNAAGKNGLTPLHV 185

Query: 128 AVLEKQVEV 136
           AV    +++
Sbjct: 186 AVHHNNLDI 194

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 74.1 bits (183), Expect = 2e-16
 Identities = 27/129 (20%), Positives = 55/129 (42%), Gaps = 13/129 (10%)

Query: 12  ELDSRKASPLHLAAAKGYLDIVLKLVS--VNPEMCFARDIDGKNPLHIAAIRGNVNVLKE 69
                  +PLH+AA +  +++   L+    +     A  + G  PLH+AA  G+  ++  
Sbjct: 207 SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN---AESVQGVTPLHLAAQEGHAEMVAL 263

Query: 70  LVKVRPQAALILM--ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHL 127
           L+    + A   +  + G+T LH       +    +L++       V++    G T LH+
Sbjct: 264 LLS---KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM---VDATTRMGYTPLHV 317

Query: 128 AVLEKQVEV 136
           A     +++
Sbjct: 318 ASHYGNIKL 326

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 73.3 bits (181), Expect = 4e-16
 Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 17/129 (13%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKE 69
             +  +PLH+AA  G + +   L+      N     A   +G  PLH+A    N++++K 
Sbjct: 143 TKKGFTPLHVAAKYGKVRVAELLLERDAHPN-----AAGKNGLTPLHVAVHHNNLDIVKL 197

Query: 70  LVKVRPQAALI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHL 127
           L+    +          G T LH     NQ+E  R L++        N++   G T LHL
Sbjct: 198 LLP---RGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS---ANAESVQGVTPLHL 251

Query: 128 AVLEKQVEV 136
           A  E   E+
Sbjct: 252 AAQEGHAEM 260

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 71.4 bits (176), Expect = 2e-15
 Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 13/121 (10%)

Query: 20  PLHLAAAKGYLDIVLKLVS--VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQA 77
           PLHL A +G++ +   L+   V  +   A    G  PLH+A+  GN+ ++K L++     
Sbjct: 281 PLHLVAQEGHVPVADVLIKHGVMVD---ATTRMGYTPLHVASHYGNIKLVKFLLQ---HQ 334

Query: 78  ALI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVE 135
           A +    + G + LH        + + LL++        N    +G+T L +A     + 
Sbjct: 335 ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS---PNEVSSDGTTPLAIAKRLGYIS 391

Query: 136 V 136
           V
Sbjct: 392 V 392

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 67.9 bits (167), Expect = 3e-14
 Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 14/116 (12%)

Query: 19  SPLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVR 74
           +PLH+A+  G + +V  L+     VN     A+   G +PLH AA +G+ +++  L+K  
Sbjct: 313 TPLHVASHYGNIKLVKFLLQHQADVN-----AKTKLGYSPLHQAAQQGHTDIVTLLLK-- 365

Query: 75  PQAALI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLA 128
              A    +   G T L        +    +L  + ++  FV   D +  +     
Sbjct: 366 -NGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETV 420

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 57.9 bits (141), Expect = 8e-11
 Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 8/93 (8%)

Query: 46  ARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALI--LMERGVTILHACVNYNQLESLRL 103
                G  PLH+A+  G++ ++K L++   + A       +  T LH        E  + 
Sbjct: 9   GGGESGLTPLHVASFMGHLPIVKNLLQ---RGASPNVSNVKVETPLHMAARAGHTEVAKY 65

Query: 104 LVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
           L++ +     VN+K  +  T LH A       +
Sbjct: 66  LLQNKAK---VNAKAKDDQTPLHCAARIGHTNM 95

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 55.2 bits (134), Expect = 8e-10
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 7/82 (8%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLVS--VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELV 71
                SPLH AA +G+ DIV  L+    +P        DG  PL IA   G ++V   L 
Sbjct: 341 TKLGYSPLHQAAQQGHTDIVTLLLKNGASPN---EVSSDGTTPLAIAKRLGYISVTDVLK 397

Query: 72  KVRPQAALILME--RGVTILHA 91
            V  + + +L+     ++    
Sbjct: 398 VVTDETSFVLVSDKHRMSFPET 419

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 76.8 bits (190), Expect = 2e-17
 Identities = 24/133 (18%), Positives = 46/133 (34%), Gaps = 24/133 (18%)

Query: 20  PLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRP 75
            LH A    + D+ ++ V     VN       D +   PL+++     V + KEL++   
Sbjct: 214 HLHWAILINWEDVAMRFVEMGIDVN-----MEDNEHTVPLYLSVRAAMVLLTKELLQKTD 268

Query: 76  QA------------ALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGST 123
                          L      +  + A  + ++ E L+LL E  ++   V    + G+ 
Sbjct: 269 VFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDE---VVRSLNTGAG 325

Query: 124 ILHLAVLEKQVEV 136
                  +    V
Sbjct: 326 GAVKRKKKAAPAV 338

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 69.9 bits (172), Expect = 6e-15
 Identities = 28/140 (20%), Positives = 46/140 (32%), Gaps = 23/140 (16%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKE 69
           D      +H+AA KG  D V +L+             ++  G   LH+A   G V+  K 
Sbjct: 17  DDENMEKIHVAARKGQTDEVRRLIETGVSPT-----IQNRFGCTALHLACKFGCVDTAKY 71

Query: 70  LVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV 129
           L        +  +  G   +H  V  N+ + +  LVE            + G     L  
Sbjct: 72  LAS---VGEVHSLWHGQKPIHLAVMANKTDLVVALVE---------GAKERGQMPESLLN 119

Query: 130 LEKQVEVFYMDFDRNNMDNN 149
              + EV   +   +     
Sbjct: 120 ECDEREV--NEIGSHVKHCK 137

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 69.5 bits (171), Expect = 6e-15
 Identities = 29/127 (22%), Positives = 51/127 (40%), Gaps = 18/127 (14%)

Query: 20  PLHLAAAKG--YLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
            LH     G  YL+++  LV            A+D   + PL  A    N   L  ++  
Sbjct: 141 ALHWCVGLGPEYLEMIKILVQLGASPT-----AKDKADETPLMRAMEFRNREALDLMMDT 195

Query: 74  RPQAALILME----RGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV 129
            P  + + ++    +G + LH  +  N  +     VE+  D   VN +D+  +  L+L+V
Sbjct: 196 VPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGID---VNMEDNEHTVPLYLSV 252

Query: 130 LEKQVEV 136
               V +
Sbjct: 253 RAAMVLL 259

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 68.4 bits (168), Expect = 2e-14
 Identities = 26/149 (17%), Positives = 46/149 (30%), Gaps = 36/149 (24%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
           +    + LHLA   G +D    L SV           G+ P+H+A +    +++  LV+ 
Sbjct: 50  NRFGCTALHLACKFGCVDTAKYLASVGEV---HSLWHGQKPIHLAVMANKTDLVVALVE- 105

Query: 74  RPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEF-------------------- 113
              A     ERG          ++ E   +   +++                        
Sbjct: 106 --GAK----ERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKIL 159

Query: 114 ------VNSKDDNGSTILHLAVLEKQVEV 136
                   +KD    T L  A+  +  E 
Sbjct: 160 VQLGASPTAKDKADETPLMRAMEFRNREA 188

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 68.0 bits (167), Expect = 2e-14
 Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 28/129 (21%)

Query: 20  PLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAAL 79
           P  L       ++      V           G+  LH     G      E++K       
Sbjct: 114 PESLLNECDEREVNEIGSHVK-------HCKGQTALHWCVGLGPEY--LEMIK------- 157

Query: 80  ILMERGV----------TILHACVNYNQLESLRLLVEIRNDHE--FVNSKDDNGSTILHL 127
           IL++ G           T L   + +   E+L L+++         ++  +  G++ LH 
Sbjct: 158 ILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHW 217

Query: 128 AVLEKQVEV 136
           A+L    +V
Sbjct: 218 AILINWEDV 226

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 65.3 bits (160), Expect = 2e-13
 Identities = 19/133 (14%), Positives = 39/133 (29%), Gaps = 19/133 (14%)

Query: 20  PLHLAAAKGYLDIVLKLVSVNPEMCFA----RDIDGKNPLHIAAIRGNVNVLKELVKVRP 75
           PL  A      + +  ++   P          +  G + LH A +    +V    V+   
Sbjct: 176 PLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVE--- 232

Query: 76  QAALI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTI--------- 124
               +          L+  V    +   + L++  +          NG+T+         
Sbjct: 233 MGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLD 292

Query: 125 -LHLAVLEKQVEV 136
            +  A    + EV
Sbjct: 293 FVPAAADPSKQEV 305

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 63.0 bits (154), Expect = 1e-12
 Identities = 12/123 (9%), Positives = 34/123 (27%), Gaps = 20/123 (16%)

Query: 20  PLHLAAAKGYLDIVLKLVSVNPEMCF------------ARDIDGKNPLHIAAIRGNVNVL 67
           PL+L+     + +  +L+                       +   + +  AA      VL
Sbjct: 247 PLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVL 306

Query: 68  KELVKVRPQAALI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTIL 125
           + L +   +   +   +  G                R+ +        V ++  + +   
Sbjct: 307 QLLQE---KLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAP---VRTRSRSRARSS 360

Query: 126 HLA 128
            ++
Sbjct: 361 AVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 52.2 bits (126), Expect = 9e-09
 Identities = 18/93 (19%), Positives = 39/93 (41%), Gaps = 10/93 (10%)

Query: 46  ARDIDGKNPLHIAAIRGNVNVLKELVK--VRPQAALILMERGVTILHACVNYNQLESLRL 103
             D +    +H+AA +G  + ++ L++  V P         G T LH    +  +++ + 
Sbjct: 15  KSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQ---NRFGCTALHLACKFGCVDTAKY 71

Query: 104 LVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
           L  +       +     G   +HLAV+  + ++
Sbjct: 72  LASVGEV---HSLWH--GQKPIHLAVMANKTDL 99

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 76.0 bits (188), Expect = 2e-17
 Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 25/130 (19%)

Query: 20  PLHLAAAKGYLDIVLKLVS-----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVR 74
            L  AA KG+++++  L+      VN     A D  G+N L  A +  + + ++ +  + 
Sbjct: 151 ALMDAAEKGHVEVLKILLDEMGADVN-----ACDNMGRNALIHALLSSDDSDVEAITHL- 204

Query: 75  PQAALILM--------ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILH 126
               L+          ERG T L   V    L  ++ L+E  +    +N  D +G T L 
Sbjct: 205 ----LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE--INDTDSDGKTALL 258

Query: 127 LAVLEKQVEV 136
           LAV  K  ++
Sbjct: 259 LAVELKLKKI 268

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 70.2 bits (173), Expect = 2e-15
 Identities = 33/135 (24%), Positives = 48/135 (35%), Gaps = 20/135 (14%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKE 69
               A+P  LAA  G + ++   +S    VN       D  G      AA+ G V  LK 
Sbjct: 69  KKNGATPFLLAAIAGSVKLLKLFLSKGADVN-----ECDFYGFTAFMEAAVYGKVKALKF 123

Query: 70  LVKV---------RPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDN 120
           L K            +    L + G T L        +E L++L  +      VN+ D+ 
Sbjct: 124 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL--LDEMGADVNACDNM 181

Query: 121 GSTILHLAVLEKQVE 135
           G   L  A+L     
Sbjct: 182 GRNALIHALLSSDDS 196

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 67.5 bits (166), Expect = 2e-14
 Identities = 33/130 (25%), Positives = 48/130 (36%), Gaps = 21/130 (16%)

Query: 20  PLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRP 75
           PLH A      DIV  L+             R  +G  P  +AAI G+V +LK  +    
Sbjct: 42  PLHNAVQMSREDIVELLLRHGADPV-----LRKKNGATPFLLAAIAGSVKLLKLFLS--- 93

Query: 76  QAALI--LMERGVTILHACVNYNQLESLRLLV-------EIRNDHEFVNSKDDNGSTILH 126
           + A +      G T       Y ++++L+ L          R   E        G+T L 
Sbjct: 94  KGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALM 153

Query: 127 LAVLEKQVEV 136
            A  +  VEV
Sbjct: 154 DAAEKGHVEV 163

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 62.9 bits (154), Expect = 1e-12
 Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 18/125 (14%)

Query: 19  SPLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKN-PLHIAAIRGNVNVLKELVKV 73
             L  A     +D+V +L+     VN      ++ +G   PLH A      ++++ L++ 
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEGGANVN-----FQEEEGGWTPLHNAVQMSREDIVELLLR- 60

Query: 74  RPQAALI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLE 131
               A      + G T          ++ L+L +    D   VN  D  G T    A + 
Sbjct: 61  --HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD---VNECDFYGFTAFMEAAVY 115

Query: 132 KQVEV 136
            +V+ 
Sbjct: 116 GKVKA 120

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 59.8 bits (146), Expect = 1e-11
 Identities = 26/136 (19%), Positives = 44/136 (32%), Gaps = 28/136 (20%)

Query: 20  PLHLAAAKGYLDIVLKLVSV---------NPEMCFARDIDGKNPLHIAAIRGNVNVLKEL 70
               AA  G +  +  L              E        G   L  AA +G+     E+
Sbjct: 108 AFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH----VEV 163

Query: 71  VKVRPQAALILM---------ERGVTILHACVNYNQLESLRLLVEIRNDHE-FVNSKDDN 120
           +K+     L+             G   L   +  +    +  +  +  DH   VN + + 
Sbjct: 164 LKI-----LLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGER 218

Query: 121 GSTILHLAVLEKQVEV 136
           G T L LAV +K + +
Sbjct: 219 GKTPLILAVEKKHLGL 234

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 54.8 bits (133), Expect = 9e-10
 Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 3/89 (3%)

Query: 48  DIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEI 107
            ++  + L  A    +V+++++L++          E G T LH  V  ++ + + LL+  
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 108 RNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
             D      +  NG+T   LA +   V++
Sbjct: 62  GAD---PVLRKKNGATPFLLAAIAGSVKL 87

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 47.9 bits (115), Expect = 2e-07
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 10/58 (17%)

Query: 20  PLHLAAAKGYLDIVLKLVS-----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK 72
           PL LA  K +L +V +L+      +N       D DGK  L +A       + + L K
Sbjct: 222 PLILAVEKKHLGLVQRLLEQEHIEIN-----DTDSDGKTALLLAVELKLKKIAELLCK 274

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 45.5 bits (109), Expect = 1e-06
 Identities = 22/116 (18%), Positives = 31/116 (26%), Gaps = 34/116 (29%)

Query: 20  PLHLAAAKG----YLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELV 71
            L  A           I   L+     VN      R   GK PL +A  + +      LV
Sbjct: 185 ALIHALLSSDDSDVEAITHLLLDHGADVN-----VRGERGKTPLILAVEKKH----LGLV 235

Query: 72  KVRPQAALILM---------ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKD 118
           +      L+             G T L   V     +   LL +        +  D
Sbjct: 236 QR-----LLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS---TDCGD 283

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 71.6 bits (177), Expect = 4e-17
 Identities = 48/123 (39%), Positives = 68/123 (55%), Gaps = 17/123 (13%)

Query: 20  PLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRP 75
           PLHLAA  G+L++V  L+     VN     A+D +G+ PLH+AA  G++ V+K L++   
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADVN-----AKDKNGRTPLHLAARNGHLEVVKLLLEAG- 58

Query: 76  QAALI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQ 133
             A +    + G T LH       LE ++LL+E   D   VN+KD NG T LHLA     
Sbjct: 59  --ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGH 113

Query: 134 VEV 136
           +EV
Sbjct: 114 LEV 116

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 52.3 bits (127), Expect = 1e-09
 Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 10/91 (10%)

Query: 20  PLHLAAAKGYLDIVLKLVSV--NPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQA 77
           PLHLAA  G+L++V  L+    +     A+D +G+ PLH+AA  G++ V+K L++     
Sbjct: 38  PLHLAARNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARNGHLEVVKLLLE---AG 91

Query: 78  ALI--LMERGVTILHACVNYNQLESLRLLVE 106
           A +    + G T LH       LE ++LL+E
Sbjct: 92  ADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 52.0 bits (126), Expect = 1e-09
 Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 5/56 (8%)

Query: 20  PLHLAAAKGYLDIVLKLVSV--NPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
           PLHLAA  G+L++V  L+    +     A+D +G+ PLH+AA  G++ V+K L++ 
Sbjct: 71  PLHLAARNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARNGHLEVVKLLLEA 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 51.6 bits (125), Expect = 2e-09
 Identities = 35/97 (36%), Positives = 47/97 (48%), Gaps = 24/97 (24%)

Query: 50  DGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGV----------TILHACVNYNQLE 99
           +G+ PLH+AA  G+     E+VK       +L+E G           T LH       LE
Sbjct: 1   NGRTPLHLAARNGH----LEVVK-------LLLEAGADVNAKDKNGRTPLHLAARNGHLE 49

Query: 100 SLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
            ++LL+E   D   VN+KD NG T LHLA     +EV
Sbjct: 50  VVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEV 83

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 71.3 bits (176), Expect = 6e-17
 Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 17/123 (13%)

Query: 20  PLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRP 75
            LH+A+ KG +  V  L+      N      +D  G  PLH A   G++ V++ L++   
Sbjct: 13  LLHIASIKGDIPSVEYLLQNGSDPN-----VKDHAGWTPLHEACNHGHLKVVELLLQ--- 64

Query: 76  QAALI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQ 133
             AL+     +  + LH       ++ ++LL+         N+ +  G   +     E  
Sbjct: 65  HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS---RNAVNIFGLRPVDYTDDESM 121

Query: 134 VEV 136
             +
Sbjct: 122 KSL 124

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 54.0 bits (131), Expect = 3e-10
 Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 8/93 (8%)

Query: 46  ARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALI--LMERGVTILHACVNYNQLESLRL 103
             +  G+  LHIA+I+G++  ++ L++     +        G T LH   N+  L+ + L
Sbjct: 5   FTNHRGETLLHIASIKGDIPSVEYLLQ---NGSDPNVKDHAGWTPLHEACNHGHLKVVEL 61

Query: 104 LVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
           L++ +     VN+      + LH A     V++
Sbjct: 62  LLQHKAL---VNTTGYQNDSPLHDAAKNGHVDI 91

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 52.0 bits (126), Expect = 2e-09
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 20  PLHLAAAKGYLDIVLKLVSV--NPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK 72
           PLH AA  G++DIV  L+S   +     A +I G  P+         ++L    K
Sbjct: 79  PLHDAAKNGHVDIVKLLLSYGASRN---AVNIFGLRPVDYTDDESMKSLLLLPEK 130

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 73.6 bits (182), Expect = 7e-17
 Identities = 30/124 (24%), Positives = 47/124 (37%), Gaps = 13/124 (10%)

Query: 20  PLHLAAAKGYLDIVLKL-----VSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVR 74
           PLH A  +     V +L       +       +D DG+ PLH +       +   L+   
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLL-----QKDQDGRIPLHWSVSFQAHEITSFLLSKM 59

Query: 75  --PQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEK 132
                     + G T  H   +   LE ++ L +     + +N   + G T LHLAV +K
Sbjct: 60  ENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKK 118

Query: 133 QVEV 136
             EV
Sbjct: 119 WFEV 122

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 71.3 bits (176), Expect = 4e-16
 Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 24/128 (18%)

Query: 20  PLHLAAAKGYLDIVLKLVS------VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK- 72
           P H+A + G L++V  L        +N          G   LH+A  +    V + L++ 
Sbjct: 75  PFHIACSVGNLEVVKSLYDRPLKPDLN-----KITNQGVTCLHLAVGKKWFEVSQFLIEN 129

Query: 73  ---VRPQAALILMERGVTILHACVNYNQLESLRLLVEI-RNDHEFVNSKDDNGSTILHLA 128
              VR +      +     LH   +   L+ + LL  + ++    VN +D  G T L  A
Sbjct: 130 GASVRIKD-----KFNQIPLHRAASVGSLKLIELLCGLGKSA---VNWQDKQGWTPLFHA 181

Query: 129 VLEKQVEV 136
           + E   + 
Sbjct: 182 LAEGHGDA 189

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 70.9 bits (175), Expect = 7e-16
 Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 17/125 (13%)

Query: 20  PLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRP 75
            LHLA  K + ++   L+     V       +D   + PLH AA  G++ +++ L  +  
Sbjct: 110 CLHLAVGKKWFEVSQFLIENGASVR-----IKDKFNQIPLHRAASVGSLKLIELLCGL-- 162

Query: 76  QAALILM--ERGVTILHACVNYNQLESLRLLVEIRN-DHEFVNSKDDNGSTILHLAVLEK 132
             + +    ++G T L   +     ++  LLVE    +    +  D+ G+    +A+ E+
Sbjct: 163 GKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE---YDLVDNKGAKAEDVALNEQ 219

Query: 133 QVEVF 137
             + F
Sbjct: 220 VKKFF 224

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 45.1 bits (108), Expect = 2e-06
 Identities = 22/86 (25%), Positives = 36/86 (41%)

Query: 51  GKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRND 110
              PLH A +      ++EL+  +P   L   + G   LH  V++   E    L+    +
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61

Query: 111 HEFVNSKDDNGSTILHLAVLEKQVEV 136
               +  DD+G T  H+A     +EV
Sbjct: 62  VNLDDYPDDSGWTPFHIACSVGNLEV 87

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 73.6 bits (182), Expect = 8e-17
 Identities = 23/121 (19%), Positives = 41/121 (33%), Gaps = 12/121 (9%)

Query: 20  PLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRP 75
            +  A   G  +   +LV     V        D +    LH AAI   ++++K  +    
Sbjct: 12  DIVKATQYGIYERCRELVEAGYDVR-----QPDKENVTLLHWAAINNRIDLVKYYISKGA 66

Query: 76  QAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVE 135
               +  +   T LH       L  +  L++   D    +  D  G + +HLA       
Sbjct: 67  IVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD---PSLIDGEGCSCIHLAAQFGHTS 123

Query: 136 V 136
           +
Sbjct: 124 I 124

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 71.7 bits (177), Expect = 4e-16
 Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 9/121 (7%)

Query: 19  SPLHLAAAKGYLDIVLKLVS--VNPEMCFARDIDGKNPLHIAAIRGN-VNVLKELVKVRP 75
           S +HLAA  G+  IV  L++   + +     D +G  PL  AA R + V+  + L+    
Sbjct: 111 SCIHLAAQFGHTSIVAYLIAKGQDVD---MMDQNGMTPLMWAAYRTHSVDPTRLLLTFNV 167

Query: 76  QAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVE 135
              L       T LH  V       + LL+E   +   V++++  G + L LA   K V 
Sbjct: 168 SVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN---VDAQNIKGESALDLAKQRKNVW 224

Query: 136 V 136
           +
Sbjct: 225 M 225

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 68.6 bits (169), Expect = 5e-15
 Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 15/123 (12%)

Query: 20  PLHLAAAKGYLDIVLKLVSV--NPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQA 77
           PLH A  +G+L +V++L+    +P      D +G + +H+AA  G+ +++  L+    + 
Sbjct: 79  PLHWATRQGHLSMVVQLMKYGADPS---LIDGEGCSCIHLAAQFGHTSIVAYLIA---KG 132

Query: 78  ALI--LMERGVTILH-ACVNYNQLESLRLLVEIRNDHEFVNSKDD-NGSTILHLAVLEKQ 133
             +  + + G+T L  A    + ++  RLL+        VN  D  + +T LH AVL   
Sbjct: 133 QDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS---VNLGDKYHKNTALHWAVLAGN 189

Query: 134 VEV 136
             V
Sbjct: 190 TTV 192

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 63.6 bits (156), Expect = 4e-13
 Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 14/117 (11%)

Query: 20  PLHLAAAKGYLDIVLKLVSV--NPEMCFARDID-GKNPLHIAAIRGNVNVLKELVKV--R 74
            LH AA    +D+V   +S     +       D    PLH A  +G+++++ +L+K    
Sbjct: 45  LLHWAAINNRIDLVKYYISKGAIVD---QLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD 101

Query: 75  PQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLE 131
           P         G + +H    +     +  L+    D   V+  D NG T L  A   
Sbjct: 102 PSLI---DGEGCSCIHLAAQFGHTSIVAYLIAKGQD---VDMMDQNGMTPLMWAAYR 152

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 51.3 bits (124), Expect = 1e-08
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 20  PLHLAAAKGYLDIVLKLVSV--NPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVR 74
            LH A   G   ++  L+    N +   A++I G++ L +A  R NV ++  L + R
Sbjct: 180 ALHWAVLAGNTTVISLLLEAGANVD---AQNIKGESALDLAKQRKNVWMINHLQEAR 233

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 49.4 bits (119), Expect = 5e-08
 Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 9/94 (9%)

Query: 46  ARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALI--LMERGVTILHACVNYNQLESLRL 103
             D      +  A   G     +ELV+       +    +  VT+LH     N+++ ++ 
Sbjct: 4   HIDDYSTWDIVKATQYGIYERCRELVE---AGYDVRQPDKENVTLLHWAAINNRIDLVKY 60

Query: 104 LVEIRNDHEFVNSKD-DNGSTILHLAVLEKQVEV 136
            +        V+    D  ST LH A  +  + +
Sbjct: 61  YISKGAI---VDQLGGDLNSTPLHWATRQGHLSM 91

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 72.8 bits (180), Expect = 1e-16
 Identities = 34/123 (27%), Positives = 46/123 (37%), Gaps = 16/123 (13%)

Query: 20  PLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRP 75
            LHLAA     D   +L+      N      +D  G+ PLH A       V + L++ R 
Sbjct: 28  ALHLAARYSRSDAAKRLLEASADAN-----IQDNMGRTPLHAAVSADAQGVFQILIRNR- 81

Query: 76  QAALI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQ 133
            A  +   M  G T L           L  L+    D   VN+ DD G + LH A     
Sbjct: 82  -ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD---VNAVDDLGKSALHWAAAVNN 137

Query: 134 VEV 136
           V+ 
Sbjct: 138 VDA 140

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 70.9 bits (175), Expect = 6e-16
 Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 18/124 (14%)

Query: 20  PLHLAAAKGYLDIVLKLVS-----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVR 74
           PLH A +     +   L+      ++     AR  DG  PL +AA      +L++L+   
Sbjct: 61  PLHAAVSADAQGVFQILIRNRATDLD-----ARMHDGTTPLILAARLAVEGMLEDLIN-- 113

Query: 75  PQAALI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEK 132
              A +  + + G + LH     N +++  +L++   +    + +++   T L LA  E 
Sbjct: 114 -SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN---KDMQNNREETPLFLAAREG 169

Query: 133 QVEV 136
             E 
Sbjct: 170 SYET 173

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 69.0 bits (170), Expect = 3e-15
 Identities = 29/123 (23%), Positives = 46/123 (37%), Gaps = 17/123 (13%)

Query: 20  PLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRP 75
           PL LAA      ++  L++    VN     A D  GK+ LH AA   NV+    L+K   
Sbjct: 95  PLILAARLAVEGMLEDLINSHADVN-----AVDDLGKSALHWAAAVNNVDAAVVLLK--- 146

Query: 76  QAALILM--ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQ 133
             A   M   R  T L         E+ ++L++   +    +  D        +A     
Sbjct: 147 NGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN---RDITDHMDRLPRDIAQERMH 203

Query: 134 VEV 136
            ++
Sbjct: 204 HDI 206

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 59.7 bits (146), Expect = 8e-12
 Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 19/117 (16%)

Query: 28  GYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALIL------ 81
               ++   +     +    D  G+  LH+AA         +  K      L+       
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSR----SDAAKR-----LLEASADAN 52

Query: 82  --MERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
                G T LHA V+ +     ++L  IRN    ++++  +G+T L LA       +
Sbjct: 53  IQDNMGRTPLHAAVSADAQGVFQIL--IRNRATDLDARMHDGTTPLILAARLAVEGM 107

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 73.7 bits (182), Expect = 1e-16
 Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 14/129 (10%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLVS--VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELV 71
           +S  ASP+H AA +G+++ V  L++   N +    +      PL++A        +K+L+
Sbjct: 154 ESDLASPIHEAARRGHVECVNSLIAYGGNID---HKISHLGTPLYLACENQQRACVKKLL 210

Query: 72  KVR--PQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV 129
           +            +   + LHA V     E   LL++   D     +K+  G   + L  
Sbjct: 211 ESGADVNQG----KGQDSPLHAVVRTASEELACLLMDFGAD---TQAKNAEGKRPVELVP 263

Query: 130 LEKQVEVFY 138
            E  +   +
Sbjct: 264 PESPLAQLF 272

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 70.6 bits (174), Expect = 1e-15
 Identities = 27/129 (20%), Positives = 50/129 (38%), Gaps = 14/129 (10%)

Query: 12  ELDSRKASPLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVL 67
            + +   SPLH A   G+L  V  L+     VN         D   PL  A + G+ + +
Sbjct: 87  IITADHVSPLHEACLGGHLSCVKILLKHGAQVN-----GVTADWHTPLFNACVSGSWDCV 141

Query: 68  KELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHL 127
             L++    A++       + +H       +E +  L+    +   ++ K  +  T L+L
Sbjct: 142 NLLLQHG--ASVQPESDLASPIHEAARRGHVECVNSLIAYGGN---IDHKISHLGTPLYL 196

Query: 128 AVLEKQVEV 136
           A   +Q   
Sbjct: 197 ACENQQRAC 205

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 68.3 bits (168), Expect = 1e-14
 Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 18/124 (14%)

Query: 19  SPLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVR 74
           SP+H AA  G+   +  L+S    VN         D  +PLH A + G+++ +K L+K  
Sbjct: 61  SPMHEAAIHGHQLSLRNLISQGWAVN-----IITADHVSPLHEACLGGHLSCVKILLK-- 113

Query: 75  PQAALI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEK 132
              A +  +     T L         + + LL++       V   + + ++ +H A    
Sbjct: 114 -HGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGAS---VQ-PESDLASPIHEAARRG 168

Query: 133 QVEV 136
            VE 
Sbjct: 169 HVEC 172

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 60.2 bits (147), Expect = 1e-11
 Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 16/121 (13%)

Query: 18  ASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQA 77
           + P       G   +   L+           +   +P+H AAI G+   L+ L+    Q 
Sbjct: 34  SKPAGPRDFPGIRLLSNPLM--------GDAVSDWSPMHEAAIHGHQLSLRNLIS---QG 82

Query: 78  ALI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVE 135
             +  +    V+ LH       L  +++L++       VN    +  T L  A +    +
Sbjct: 83  WAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ---VNGVTADWHTPLFNACVSGSWD 139

Query: 136 V 136
            
Sbjct: 140 C 140

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 53.6 bits (130), Expect = 2e-09
 Identities = 18/118 (15%), Positives = 34/118 (28%), Gaps = 15/118 (12%)

Query: 23  LAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAA 78
           + ++  +      LV     +         +DG  P       G    ++ L        
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPG----IRLLSN----PL 52

Query: 79  LILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
           +       + +H    +    SLR L+        VN    +  + LH A L   +  
Sbjct: 53  MGDAVSDWSPMHEAAIHGHQLSLRNLISQGWA---VNIITADHVSPLHEACLGGHLSC 107

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 70.1 bits (173), Expect = 1e-16
 Identities = 28/123 (22%), Positives = 45/123 (36%), Gaps = 17/123 (13%)

Query: 20  PLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRP 75
               A   G LD V   V+    VN          G+ PLH AA  G + +L+ L+    
Sbjct: 10  EFMWALKNGDLDEVKDYVAKGEDVN-----RTLEGGRKPLHYAADCGQLEILEFLLL--- 61

Query: 76  QAALI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQ 133
           + A I    +  +T L + V    +  ++LL+    D      K  +G T       +  
Sbjct: 62  KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD---KTVKGPDGLTAFEATDNQAI 118

Query: 134 VEV 136
             +
Sbjct: 119 KAL 121

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 53.2 bits (129), Expect = 4e-10
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 8/89 (8%)

Query: 50  DGKNPLHIAAIRGNVNVLKELVKVRPQAALI--LMERGVTILHACVNYNQLESLRLLVEI 107
                   A   G+++ +K+ V    +   +   +E G   LH   +  QLE L  L+  
Sbjct: 6   MCDKEFMWALKNGDLDEVKDYVA---KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK 62

Query: 108 RNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
             D   +N+ D +  T L  AV E  V  
Sbjct: 63  GAD---INAPDKHHITPLLSAVYEGHVSC 88

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 48.2 bits (116), Expect = 4e-08
 Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 5/51 (9%)

Query: 20  PLHLAAAKGYLDIVLKLVSV--NPEMCFARDIDGKNPLHIAAIRGNVNVLK 68
           PL  A  +G++  V  L+S   +      +  DG         +    +L+
Sbjct: 76  PLLSAVYEGHVSCVKLLLSKGADKT---VKGPDGLTAFEATDNQAIKALLQ 123

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 71.2 bits (176), Expect = 2e-16
 Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 17/123 (13%)

Query: 20  PLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRP 75
            L  AA  G  D V  L++    VN     A D  G  PLH+AA  G++ +++ L+K   
Sbjct: 17  KLLEAARAGRDDEVRILMANGADVN-----AEDASGWTPLHLAAFNGHLEIVEVLLK--- 68

Query: 76  QAALI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQ 133
             A +  +   G+T L     +  LE + +L++   D   VN+ D  G T LHLA +   
Sbjct: 69  NGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGAD---VNANDMEGHTPLHLAAMFGH 125

Query: 134 VEV 136
           +E+
Sbjct: 126 LEI 128

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 69.3 bits (171), Expect = 9e-16
 Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 17/123 (13%)

Query: 20  PLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRP 75
           PLHLAA  G+L+IV  L+     VN     A D  G  PL +AA+ G++ +++ L+K   
Sbjct: 50  PLHLAAFNGHLEIVEVLLKNGADVN-----AVDHAGMTPLRLAALFGHLEIVEVLLK--- 101

Query: 76  QAALI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQ 133
             A +      G T LH    +  LE + +L++   D   VN++D  G T   +++    
Sbjct: 102 NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD---VNAQDKFGKTAFDISIDNGN 158

Query: 134 VEV 136
            ++
Sbjct: 159 EDL 161

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 49.7 bits (120), Expect = 2e-08
 Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 8/91 (8%)

Query: 48  DIDGKNPLHIAAIRGNVNVLKELVKVRPQAALI--LMERGVTILHACVNYNQLESLRLLV 105
             D    L  AA  G  + ++ L+      A +      G T LH       LE + +L+
Sbjct: 11  GSDLGKKLLEAARAGRDDEVRILMA---NGADVNAEDASGWTPLHLAAFNGHLEIVEVLL 67

Query: 106 EIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
           +   D   VN+ D  G T L LA L   +E+
Sbjct: 68  KNGAD---VNAVDHAGMTPLRLAALFGHLEI 95

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 48.9 bits (118), Expect = 4e-08
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 9/58 (15%)

Query: 20  PLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
           PLHLAA  G+L+IV  L+     VN     A+D  GK    I+   GN ++ + L K+
Sbjct: 116 PLHLAAMFGHLEIVEVLLKNGADVN-----AQDKFGKTAFDISIDNGNEDLAEILQKL 168

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 72.4 bits (179), Expect = 2e-16
 Identities = 38/129 (29%), Positives = 55/129 (42%), Gaps = 16/129 (12%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKE 69
              K SPLH AA  G++DI   LV     ++         D + PL  AA   ++  +K 
Sbjct: 8   HQNKRSPLHAAAEAGHVDICHMLVQAGANID-----TCSEDQRTPLMEAAENNHLEAVKY 62

Query: 70  LVKVRPQAALI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHL 127
           L+K     AL+      G T LH        E ++ L  + N    VN +DD G T +  
Sbjct: 63  LIK---AGALVDPKDAEGSTCLHLAAKKGHYEVVQYL--LSNGQMDVNCQDDGGWTPMIW 117

Query: 128 AVLEKQVEV 136
           A   K V++
Sbjct: 118 ATEYKHVDL 126

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 72.4 bits (179), Expect = 2e-16
 Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 17/123 (13%)

Query: 20  PLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRP 75
           P+  A    ++D+V  L+S    +N      RD +    LH AA  G V++ + L+    
Sbjct: 114 PMIWATEYKHVDLVKLLLSKGSDIN-----IRDNEENICLHWAAFSGCVDIAEILLA--- 165

Query: 76  QAALI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQ 133
               +  +   G + LH     N+ + + L +   +D   V  K+  G T L  A L  Q
Sbjct: 166 AKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSD---VTLKNKEGETPLQCASLNSQ 222

Query: 134 VEV 136
           V  
Sbjct: 223 VWS 225

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 70.9 bits (175), Expect = 7e-16
 Identities = 27/122 (22%), Positives = 56/122 (45%), Gaps = 14/122 (11%)

Query: 20  PLHLAAAKGYLDIVLKLVS---VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQ 76
            LHLAA KG+ ++V  L+S   ++      +D  G  P+  A    +V+++K L+    +
Sbjct: 80  CLHLAAKKGHYEVVQYLLSNGQMDVN---CQDDGGWTPMIWATEYKHVDLVKLLLS---K 133

Query: 77  AALI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQV 134
            + I          LH       ++   +L+  + D   +++ + +G + LH+A  E + 
Sbjct: 134 GSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCD---LHAVNIHGDSPLHIAARENRY 190

Query: 135 EV 136
           + 
Sbjct: 191 DC 192

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 70.1 bits (173), Expect = 2e-15
 Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 12/121 (9%)

Query: 20  PLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRP 75
           PL  AA   +L+ V  L+     V+      +D +G   LH+AA +G+  V++ L+    
Sbjct: 47  PLMEAAENNHLEAVKYLIKAGALVD-----PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQ 101

Query: 76  QAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVE 135
                  + G T +     Y  ++ ++LL+   +D   +N +D+  +  LH A     V+
Sbjct: 102 MDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD---INIRDNEENICLHWAAFSGCVD 158

Query: 136 V 136
           +
Sbjct: 159 I 159

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 58.6 bits (143), Expect = 3e-11
 Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 8/93 (8%)

Query: 46  ARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALI--LMERGVTILHACVNYNQLESLRL 103
               + ++PLH AA  G+V++   LV+     A I    E   T L      N LE+++ 
Sbjct: 6   MEHQNKRSPLHAAAEAGHVDICHMLVQ---AGANIDTCSEDQRTPLMEAAENNHLEAVKY 62

Query: 104 LVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
           L++       V+ KD  GST LHLA  +   EV
Sbjct: 63  LIKAGAL---VDPKDAEGSTCLHLAAKKGHYEV 92

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 53.2 bits (129), Expect = 2e-09
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 20  PLHLAAAKGYLDIVLKLVSV--NPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQA 77
           PLH+AA +   D V+  +S   +      ++ +G+ PL  A++   V    ++ K    +
Sbjct: 180 PLHIAARENRYDCVVLFLSRDSDVT---LKNKEGETPLQCASLNSQVWSALQMSKALQDS 236

Query: 78  A 78
           A
Sbjct: 237 A 237

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 73.8 bits (182), Expect = 2e-16
 Identities = 26/129 (20%), Positives = 47/129 (36%), Gaps = 15/129 (11%)

Query: 20  PLHLAAAKGYLDIVLKLVSV--NPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQA 77
           PL LA       +V  L+    +P      +   ++ LH AA   +  ++  ++      
Sbjct: 169 PLMLAVLARRRRLVAYLMKAGADPT---IYNKSERSALHQAAANRDFGMMVYMLNSTKLK 225

Query: 78  ALI--LMERGVTILHACVNYNQLESL---RLLVEI-----RNDHEFVNSKDDNGSTILHL 127
             I  L   G+T L    +    + +   +LLVE       +     +S+   G T LH 
Sbjct: 226 GDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHY 285

Query: 128 AVLEKQVEV 136
           A     + +
Sbjct: 286 AAQVSNMPI 294

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 68.8 bits (169), Expect = 1e-14
 Identities = 21/132 (15%), Positives = 38/132 (28%), Gaps = 24/132 (18%)

Query: 20  PLHLAAAKGYLDIVLKLVSVNPEMCF-------ARDIDGKNPLHIAAIRGNVNVLKELVK 72
            LH  A+    +    L+    + C        A D D   PL +A +       + LV 
Sbjct: 128 VLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARR----RRLVA 183

Query: 73  VRPQAALILM--------ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTI 124
                 L+          +   + LH          +  ++        +   D NG T 
Sbjct: 184 Y-----LMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTA 238

Query: 125 LHLAVLEKQVEV 136
           L +    +  + 
Sbjct: 239 LMIVAHNEGRDQ 250

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 65.7 bits (161), Expect = 1e-13
 Identities = 19/133 (14%), Positives = 38/133 (28%), Gaps = 19/133 (14%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
           +      LH   A G   I   +   +  +        +  LH  A   +    ++L+  
Sbjct: 91  EPESPIKLH-TEAAGSYAITEPITRESVNI--IDPRHNRTVLHWIASNSSAEKSEDLI-- 145

Query: 74  RPQAALILMERGV----------TILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGST 123
               A   +  G           T L   V   +   +  L++   D       + +  +
Sbjct: 146 -VHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD---PTIYNKSERS 201

Query: 124 ILHLAVLEKQVEV 136
            LH A   +   +
Sbjct: 202 ALHQAAANRDFGM 214

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 61.5 bits (150), Expect = 5e-12
 Identities = 26/136 (19%), Positives = 41/136 (30%), Gaps = 31/136 (22%)

Query: 20  PLHLAAAKGYLDIVLK---LVS----VNPEMCF---ARDIDGKNPLHIAAIRGNVNVLKE 69
            L + A     D V     LV     V+ +      +    G+  LH AA   N      
Sbjct: 238 ALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSN----MP 293

Query: 70  LVKVRPQAALILM---------ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDN 120
           +VK      L+           E G T +       ++E +  L++       V + D  
Sbjct: 294 IVKY-----LVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS---VEAVDAT 345

Query: 121 GSTILHLAVLEKQVEV 136
             T   LA       +
Sbjct: 346 DHTARQLAQANNHHNI 361

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 61.1 bits (149), Expect = 6e-12
 Identities = 24/132 (18%), Positives = 44/132 (33%), Gaps = 13/132 (9%)

Query: 12  ELDSRKASPLHLAAAKGYLDIVLKLVSV--NPEMCFARDIDGKNPLHIAAIRGNVNVLKE 69
           EL      P       G   +     +    P      + +    LH  A  G+  + + 
Sbjct: 56  ELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPT---EPEPESPIKLHTEA-AGSYAITEP 111

Query: 70  LVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEF-----VNSKDDNGSTI 124
           + +      +I      T+LH   + +  E    L+             VN+ D + +T 
Sbjct: 112 ITRE--SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTP 169

Query: 125 LHLAVLEKQVEV 136
           L LAVL ++  +
Sbjct: 170 LMLAVLARRRRL 181

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 50.3 bits (121), Expect = 3e-08
 Identities = 13/119 (10%), Positives = 23/119 (19%), Gaps = 20/119 (16%)

Query: 20  PLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAAL 79
            L  A+  GY+      +                P       GN  +            +
Sbjct: 40  SLLEASYDGYIKRQRNEL----------QHYSLYPNPQGYGNGNDFLGDFNHT---NLQI 86

Query: 80  ILM--ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
                      LH             +     +   +     +  T+LH        E 
Sbjct: 87  PTEPEPESPIKLHTEAA-GSYAITEPITRESVN---II-DPRHNRTVLHWIASNSSAEK 140

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 50.0 bits (120), Expect = 4e-08
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 5/59 (8%)

Query: 20  PLHLAAAKGYLDIVLKLVSV--NPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQ 76
           P+ LAA +G +++V+ L+    + E   A D        +A    + N++    + RP+
Sbjct: 316 PIMLAAQEGRIEVVMYLIQQGASVE---AVDATDHTARQLAQANNHHNIVDIFDRCRPE 371

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 5/80 (6%), Positives = 14/80 (17%), Gaps = 13/80 (16%)

Query: 50  DGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRN 109
             ++ L  A+  G +   +  ++             +                       
Sbjct: 36  SSQHSLLEASYDGYIKRQRNELQ----------HYSLYPNPQGYGNGNDFLGDFNHTNLQ 85

Query: 110 DHEFVNSKDDNGSTILHLAV 129
                   +      LH   
Sbjct: 86  I---PTEPEPESPIKLHTEA 102

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 72.1 bits (177), Expect = 3e-16
 Identities = 24/139 (17%), Positives = 46/139 (33%), Gaps = 25/139 (17%)

Query: 20  PLHLAAA---KGYLDIVLKLVSVNPEM----------CFARDIDGKNPLHIAAIRGNVNV 66
            L  A      G    ++ L+ ++ +           C      G + LHIA  + ++  
Sbjct: 46  CLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQC 105

Query: 67  LKELVK------------VRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFV 114
           +K LV+               +        G   L       Q + +  L+E  +    +
Sbjct: 106 VKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASL 165

Query: 115 NSKDDNGSTILHLAVLEKQ 133
            + D  G+T+LH  V+   
Sbjct: 166 EATDSLGNTVLHALVMIAD 184

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 64.0 bits (156), Expect = 3e-13
 Identities = 35/154 (22%), Positives = 52/154 (33%), Gaps = 33/154 (21%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLVS----VN--------PEMCFARDIDGKNPLHIAAIR 61
             +  S LH+A  K  L  V  LV     V+         +        G+ PL +AA  
Sbjct: 87  FYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACT 146

Query: 62  GNVNVLKELVKVRPQAALILM--ERGVTILHACVNY----------------NQLESLRL 103
              +V+  L++   Q A +      G T+LHA V                    L+    
Sbjct: 147 KQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGAR 206

Query: 104 LVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVF 137
           L             +  G T L LA  E ++E+F
Sbjct: 207 LCPTVQL---EEISNHQGLTPLKLAAKEGKIEIF 237

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 47.1 bits (112), Expect = 3e-07
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK 72
           +S + S L +    G L +  +L           +  G  PL +AA  G + + + +++
Sbjct: 185 NSPENSALVIHMYDGLLQMGARLCPTVQLE-EISNHQGLTPLKLAAKEGKIEIFRHILQ 242

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 46.7 bits (111), Expect = 5e-07
 Identities = 25/147 (17%), Positives = 47/147 (31%), Gaps = 30/147 (20%)

Query: 20  PLHLAAAKGYLDIVLKLV-------SVNPEMCFARDIDGKNPLHIAAI---RGNVNVLKE 69
            L    ++G  + +  L+           +  +     GK  L  A +    G    +  
Sbjct: 5   RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMP 64

Query: 70  LVKVRPQAALILM----------ERGVTILHACVNYNQLESLRLL------VEIRNDHEF 113
           L+++   +                +G + LH  +    L+ ++LL      V +R    F
Sbjct: 65  LLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRF 124

Query: 114 ----VNSKDDNGSTILHLAVLEKQVEV 136
                 +    G   L LA   KQ +V
Sbjct: 125 FQKHQGTCFYFGELPLSLAACTKQWDV 151

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 18/104 (17%)

Query: 51  GKNPLHIAAIRGNVNVLKELVKVRPQAALILM-------ERGVTILHACV---NYNQLES 100
            ++ L     RG    L  L++     +  L          G T L   V          
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 101 LRLLVEIRNDHEF--------VNSKDDNGSTILHLAVLEKQVEV 136
           +  L++I  D              +   G + LH+A+ ++ ++ 
Sbjct: 62  IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQC 105

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 71.7 bits (177), Expect = 3e-16
 Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 6/121 (4%)

Query: 19  SPLHLAAAKGYLDIVLKLVSVNPEMCF---ARDIDGKNPLHIAAIRGNVNVLKELVKVRP 75
           +  HLA        +  L+           AR+ DG   LH+A        ++ L++   
Sbjct: 81  TAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGA 140

Query: 76  QAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVE 135
               + ++ G + L   V  N L  ++LL++   +   VN++  +GS+ LH A     + 
Sbjct: 141 DIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN---VNAQMYSGSSALHSASGRGLLP 197

Query: 136 V 136
           +
Sbjct: 198 L 198

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 71.3 bits (176), Expect = 6e-16
 Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 19/134 (14%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLVS--------VNPEMCFARDIDGKNPLHIAAIRGNVN 65
           D    +PLH+A  +G L  V +LV+        ++       +   + PLH+A I    +
Sbjct: 6   DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD-----IYNNLRQTPLHLAVITTLPS 60

Query: 66  VLKELVKVRPQAALI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEF-VNSKDDNGS 122
           V++ LV      A    L   G T  H    +     LR L++        + +++ +G 
Sbjct: 61  VVRLLVT---AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGL 117

Query: 123 TILHLAVLEKQVEV 136
           T LH+AV  +  E 
Sbjct: 118 TALHVAVNTECQET 131

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 69.8 bits (172), Expect = 2e-15
 Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 12/123 (9%)

Query: 20  PLHLAAAKGYLDIVLKLVSV--NPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQA 77
           PLHLA       +V  LV+   +P    A D  G+   H+A    +   L+ L+      
Sbjct: 49  PLHLAVITTLPSVVRLLVTAGASPM---ALDRHGQTAAHLACEHRSPTCLRALLDSAAPG 105

Query: 78  ALILMER---GVTILHACVNYNQLESLRLLVEIRNDHEFVNSKD-DNGSTILHLAVLEKQ 133
            L L  R   G+T LH  VN    E+++LL+E   D   +++ D  +G + L  AV    
Sbjct: 106 TLDLEARNYDGLTALHVAVNTECQETVQLLLERGAD---IDAVDIKSGRSPLIHAVENNS 162

Query: 134 VEV 136
           + +
Sbjct: 163 LSM 165

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 69.8 bits (172), Expect = 2e-15
 Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 18/124 (14%)

Query: 20  PLHLAAAKGYLDIVLKLVS----VNPEMCFARDI-DGKNPLHIAAIRGNVNVLKELVKVR 74
            LH+A      + V  L+     ++     A DI  G++PL  A    ++++++ L++  
Sbjct: 119 ALHVAVNTECQETVQLLLERGADID-----AVDIKSGRSPLIHAVENNSLSMVQLLLQ-- 171

Query: 75  PQAALI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEK 132
              A +   M  G + LH+      L  +R LV    D    + K+ +  T L +A   +
Sbjct: 172 -HGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD---SSLKNCHNDTPLMVARSRR 227

Query: 133 QVEV 136
            +++
Sbjct: 228 VIDI 231

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 60.2 bits (147), Expect = 6e-12
 Identities = 27/94 (28%), Positives = 37/94 (39%), Gaps = 6/94 (6%)

Query: 46  ARDIDGKNPLHIAAIRGNVNVLKELVKVRPQA-ALI--LMERGVTILHACVNYNQLESLR 102
             D DG  PLHIA ++GN+  +  LV +  Q    +        T LH  V       +R
Sbjct: 4   RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVR 63

Query: 103 LLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
           LLV          + D +G T  HLA   +    
Sbjct: 64  LLVTAGAS---PMALDRHGQTAAHLACEHRSPTC 94

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 71.8 bits (177), Expect = 4e-16
 Identities = 34/133 (25%), Positives = 53/133 (39%), Gaps = 14/133 (10%)

Query: 12  ELDSRKASPLHLAAAKGYLDIVLKLVS--VNPEMCF---ARDIDGKNPLHIAAIRGNVNV 66
             D R  +PLHLA  +G L  V  L      P +     A + +G   LH+A+I G + +
Sbjct: 73  LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGI 132

Query: 67  LKELVKVRPQAALILM---ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGST 123
           ++ LV      A +       G T LH  V+    + + LL++   D   VN     G +
Sbjct: 133 VELLVS---LGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD---VNRVTYQGYS 186

Query: 124 ILHLAVLEKQVEV 136
              L        +
Sbjct: 187 PYQLTWGRPSTRI 199

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 71.4 bits (176), Expect = 5e-16
 Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 21/138 (15%)

Query: 12  ELDSRKASPLHLAAAKGYLDIVLKLV--------SVNPEMCFARDIDGKNPLHIAAIRGN 63
           +L     S LHLA       + ++++         +N      ++   + PLH+A I   
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLN-----FQNNLQQTPLHLAVITNQ 57

Query: 64  VNVLKELVKVRPQAALI--LMERGVTILHACVNYNQLESLRLLVE---IRNDHEFVNSKD 118
             + + L+              RG T LH       L S+ +L +     + H  + + +
Sbjct: 58  PEIAEALLG---AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATN 114

Query: 119 DNGSTILHLAVLEKQVEV 136
            NG T LHLA +   + +
Sbjct: 115 YNGHTCLHLASIHGYLGI 132

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 61.4 bits (150), Expect = 2e-12
 Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 18/124 (14%)

Query: 20  PLHLAAAKGYLDIVLKLVS----VNPEMCFARD-IDGKNPLHIAAIRGNVNVLKELVKVR 74
            LHLA+  GYL IV  LVS    VN     A++  +G+  LH+A    N +++  L+K  
Sbjct: 120 CLHLASIHGYLGIVELLVSLGADVN-----AQEPCNGRTALHLAVDLQNPDLVSLLLK-- 172

Query: 75  PQAALI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEK 132
              A +  +  +G +              + L ++  +                     +
Sbjct: 173 -CGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE---NLQMLPESEDEESYDTESE 228

Query: 133 QVEV 136
             E 
Sbjct: 229 FTEF 232

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 49.1 bits (118), Expect = 6e-08
 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 9/58 (15%)

Query: 19  SPLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK 72
           + LHLA      D+V  L+     VN          G +P  +   R +  + ++L +
Sbjct: 153 TALHLAVDLQNPDLVSLLLKCGADVN-----RVTYQGYSPYQLTWGRPSTRIQQQLGQ 205

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 71.5 bits (176), Expect = 4e-16
 Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 11/120 (9%)

Query: 20  PLHLAAAKGYLDIVLKLVS---VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQ 76
           P   AA K     + +L+    V+     A D +G+  L   A  G+   ++ L +    
Sbjct: 48  PWWTAARKADEQALSQLLEDRDVD-----AVDENGRTALLFVAGLGSDKCVRLLAEAGAD 102

Query: 77  AALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
                M  G+T LH    Y + E +  LVE+  D   +  +D+ G T L LA    +   
Sbjct: 103 LDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD---IEVEDERGLTALELAREILKTTP 159

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 58.8 bits (143), Expect = 3e-11
 Identities = 20/121 (16%), Positives = 35/121 (28%), Gaps = 24/121 (19%)

Query: 20  PLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRP 75
            LH+AA     ++V  LV     +        D  G   L +A            ++   
Sbjct: 114 ALHMAAGYVRPEVVEALVELGADIE-----VEDERGLTALELAREILKTTPKGNPMQ--- 165

Query: 76  QAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVE 135
               I +E  V  +     +   E    + EI         K   G  + +L   +   +
Sbjct: 166 FGRRIGLE-KVINVLEGQVFEYAE----VDEI-------VEKRGKGKDVEYLVRWKDGGD 213

Query: 136 V 136
            
Sbjct: 214 C 214

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 56.8 bits (138), Expect = 1e-10
 Identities = 25/125 (20%), Positives = 45/125 (36%), Gaps = 12/125 (9%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK- 72
               A    +    G+    +    +  ++      + + P   AA + +   L +L++ 
Sbjct: 12  AGEGAMEYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKADEQALSQLLED 67

Query: 73  VRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKD-DNGSTILHLAVLE 131
               A     E G T L         + +RLL E   D   ++ +D   G T LH+A   
Sbjct: 68  RDVDAV---DENGRTALLFVAGLGSDKCVRLLAEAGAD---LDHRDMRGGLTALHMAAGY 121

Query: 132 KQVEV 136
            + EV
Sbjct: 122 VRPEV 126

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 69.4 bits (171), Expect = 6e-16
 Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 15/122 (12%)

Query: 20  PLHLAAAKGYLDIVLKLVS---VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQ 76
            L  AAA+G +  V +L+    V+P+   A +  GK  L +    G+  +  EL+K   Q
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPD---ALNRFGKTALQVMM-FGSTAIALELLK---Q 57

Query: 77  AALI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQV 134
            A        G + +H       L++L++LVE   D   VN  D  G+  +HLAV E   
Sbjct: 58  GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGAD---VNVPDGTGALPIHLAVQEGHT 114

Query: 135 EV 136
            V
Sbjct: 115 AV 116

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 64.7 bits (159), Expect = 4e-14
 Identities = 29/131 (22%), Positives = 48/131 (36%), Gaps = 19/131 (14%)

Query: 12  ELDSRKASPLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVL 67
            L+    + L      G   I L+L+      N      +D  G +P+H AA  G ++ L
Sbjct: 31  ALNRFGKTALQ-VMMFGSTAIALELLKQGASPN-----VQDTSGTSPVHDAARTGFLDTL 84

Query: 68  KELVKVRPQAALI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTIL 125
           K LV+     A +      G   +H  V       +  L         ++ +D  G T L
Sbjct: 85  KVLVE---HGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA----ESDLHRRDARGLTPL 137

Query: 126 HLAVLEKQVEV 136
            LA+     ++
Sbjct: 138 ELALQRGAQDL 148

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 47.4 bits (114), Expect = 1e-07
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 12/90 (13%)

Query: 51  GKNPLHIAAIRGNVNVLKELV---KVRPQAALILMERGVTILH-ACVNYNQLESLRLLVE 106
             + L  AA RG+V  ++ L+    V P A       G T L      +        L++
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDAL---NRFGKTALQVMM--FGSTAIALELLK 56

Query: 107 IRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
                   N +D +G++ +H A     ++ 
Sbjct: 57  QGAS---PNVQDTSGTSPVHDAARTGFLDT 83

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 72.1 bits (178), Expect = 6e-16
 Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 17/129 (13%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKE 69
           D RK++PLHLAA    + IV  L+     V+     A+D  G  PLH A   G+  V + 
Sbjct: 55  DGRKSTPLHLAAGYNRVRIVQLLLQHGADVH-----AKDKGGLVPLHNACSYGHYEVTEL 109

Query: 70  LVKVRPQAALI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHL 127
           L+K     A +  +     T LH   + N++E   LL+    D       + +G + + +
Sbjct: 110 LLK---HGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD---PTLVNCHGKSAVDM 163

Query: 128 AVLEKQVEV 136
           A   +  E 
Sbjct: 164 APTPELRER 172

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 68.3 bits (168), Expect = 2e-14
 Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 18/130 (13%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKL-----VSVNPEMCFARDIDGKNPLHIAAIRGNVNVLK 68
              K   L  AA  G  + ++ L     V+ +     A D     PLH+AA    V +++
Sbjct: 21  GEYKKDELLEAARSGNEEKLMALLTPLNVNCH-----ASDGRKSTPLHLAAGYNRVRIVQ 75

Query: 69  ELVKVRPQAALI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILH 126
            L++     A +    + G+  LH   +Y   E   LL++       VN+ D    T LH
Sbjct: 76  LLLQ---HGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGAC---VNAMDLWQFTPLH 129

Query: 127 LAVLEKQVEV 136
            A  + +VEV
Sbjct: 130 EAASKNRVEV 139

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 64.4 bits (158), Expect = 4e-13
 Identities = 22/148 (14%), Positives = 44/148 (29%), Gaps = 41/148 (27%)

Query: 19  SPLHLAAAKGYLDIVLKLVSVNPEMCFAR--------------------DIDGKNPLHIA 58
           S + +A      + +      +  +  AR                        +  LH A
Sbjct: 159 SAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCA 218

Query: 59  AIRGNVNVLKELVKVRPQAALILMERGV----------TILHACVNYNQLESLRLLVEIR 108
               +    K++ +       +L+ +G           T LH        + + +L +  
Sbjct: 219 VASLHPK-RKQVAE-------LLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHG 270

Query: 109 NDHEFVNSKDDNGSTILHLAVLEKQVEV 136
                +N+ D  G T LH A L   ++ 
Sbjct: 271 AK---MNALDSLGQTALHRAALAGHLQT 295

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 64.1 bits (157), Expect = 5e-13
 Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 20/119 (16%)

Query: 19  SPLHLAAAKGY---LDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELV 71
           + LH A A  +     +   L+     VN      ++ D   PLH+AA R + +V++ L 
Sbjct: 213 TALHCAVASLHPKRKQVAELLLRKGANVN-----EKNKDFMTPLHVAAERAHNDVMEVLH 267

Query: 72  KVRPQAALI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLA 128
           K     A +  L   G T LH       L++ RLL+   +D    +     G T   + 
Sbjct: 268 K---HGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSD---PSIISLQGFTAAQMG 320

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 64.1 bits (157), Expect = 6e-13
 Identities = 27/136 (19%), Positives = 43/136 (31%), Gaps = 32/136 (23%)

Query: 20  PLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRP 75
           PLH A + G+ ++   L+     VN     A D+    PLH AA +  V V   L+    
Sbjct: 94  PLHNACSYGHYEVTELLLKHGACVN-----AMDLWQFTPLHEAASKNRVEVCSLLLS--- 145

Query: 76  QAALI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEF------------------VN 115
             A    +   G + +         E L    +  +  +                     
Sbjct: 146 HGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINF 205

Query: 116 SKDDNGSTILHLAVLE 131
            +  +  T LH AV  
Sbjct: 206 KQPQSHETALHCAVAS 221

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 52.5 bits (127), Expect = 6e-09
 Identities = 27/99 (27%), Positives = 37/99 (37%), Gaps = 19/99 (19%)

Query: 46  ARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILM--------ERGVTILHACVNYNQ 97
                 K+ L  AA  GN   L  L        L  +         R  T LH    YN+
Sbjct: 19  LTGEYKKDELLEAARSGNEEKLMAL--------LTPLNVNCHASDGRKSTPLHLAAGYNR 70

Query: 98  LESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
           +  ++LL++   D   V++KD  G   LH A      EV
Sbjct: 71  VRIVQLLLQHGAD---VHAKDKGGLVPLHNACSYGHYEV 106

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 44.8 bits (107), Expect = 3e-06
 Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 16/87 (18%)

Query: 50  DGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRN 109
            GK+ L +A       +  E              +   +L A  + N+ + + LL  +  
Sbjct: 3   FGKSALDLADPSAKAVLTGE-------------YKKDELLEAARSGNEEKLMALLTPLNV 49

Query: 110 DHEFVNSKDDNGSTILHLAVLEKQVEV 136
           +    ++ D   ST LHLA    +V +
Sbjct: 50  N---CHASDGRKSTPLHLAAGYNRVRI 73

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 42.5 bits (101), Expect = 2e-05
 Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 5/50 (10%)

Query: 12  ELDSRKASPLHLAAAKGYLDIVLKLVS--VNPEMCFARDIDGKNPLHIAA 59
            LDS   + LH AA  G+L     L+S   +P       + G     +  
Sbjct: 275 ALDSLGQTALHRAALAGHLQTCRLLLSYGSDPS---IISLQGFTAAQMGN 321

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 69.4 bits (171), Expect = 9e-16
 Identities = 25/124 (20%), Positives = 48/124 (38%), Gaps = 18/124 (14%)

Query: 20  PLHLAAAKGYLDIVLKLVS-----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV- 73
            +     +G    V   +      +N       D  G +PLH A   G   V++ L+   
Sbjct: 8   DIFTQCREGNAVAVRLWLDNTENDLN-----QGDDHGFSPLHWACREGRSAVVEMLIMRG 62

Query: 74  -RPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEK 132
            R            T LH   ++   + ++ L++ + D   +N+ +++G+  LH A    
Sbjct: 63  ARINVM---NRGDDTPLHLAASHGHRDIVQKLLQYKAD---INAVNEHGNVPLHYACFWG 116

Query: 133 QVEV 136
           Q +V
Sbjct: 117 QDQV 120

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 68.6 bits (169), Expect = 2e-15
 Identities = 29/129 (22%), Positives = 51/129 (39%), Gaps = 17/129 (13%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKE 69
           D    SPLH A  +G   +V  L+     +N       +     PLH+AA  G+ +++++
Sbjct: 36  DDHGFSPLHWACREGRSAVVEMLIMRGARIN-----VMNRGDDTPLHLAASHGHRDIVQK 90

Query: 70  LVKVRPQAALI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHL 127
           L++     A I  + E G   LH    + Q +    LV        V+  +  G   +  
Sbjct: 91  LLQ---YKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGAL---VSICNKYGEMPVDK 144

Query: 128 AVLEKQVEV 136
           A    +  +
Sbjct: 145 AKAPLRELL 153

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 59.0 bits (144), Expect = 7e-12
 Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 14/93 (15%)

Query: 20  PLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRP 75
           PLHLAA+ G+ DIV KL+     +N     A +  G  PLH A   G   V ++LV    
Sbjct: 75  PLHLAASHGHRDIVQKLLQYKADIN-----AVNEHGNVPLHYACFWGQDQVAEDLVA--- 126

Query: 76  QAALILM--ERGVTILHACVNYNQLESLRLLVE 106
             AL+ +  + G   +       +        +
Sbjct: 127 NGALVSICNKYGEMPVDKAKAPLRELLRERAEK 159

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 53.2 bits (129), Expect = 1e-09
 Identities = 12/91 (13%), Positives = 29/91 (31%), Gaps = 7/91 (7%)

Query: 48  DIDGKNPLHIAAIRGNVNVLKELVKVRPQAALI--LMERGVTILHACVNYNQLESLRLLV 105
             +  + +      GN   ++  +        +    + G + LH      +   + +L+
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDN--TENDLNQGDDHGFSPLHWACREGRSAVVEMLI 59

Query: 106 EIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
                   +N  +    T LHLA      ++
Sbjct: 60  MRGAR---INVMNRGDDTPLHLAASHGHRDI 87

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 68.6 bits (169), Expect = 1e-15
 Identities = 31/135 (22%), Positives = 53/135 (39%), Gaps = 29/135 (21%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKE 69
           D    SPLHLAA  G+      L+      +     AR    + PLH+AA  G+      
Sbjct: 31  DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD-----ARTKVDRTPLHMAASEGH----AN 81

Query: 70  LVKVRPQAALILM--------ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNG 121
           +V+V     L+             +T LH    +N  E + LL++   D   V+++    
Sbjct: 82  IVEV-----LLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD---VHTQSKFC 133

Query: 122 STILHLAVLEKQVEV 136
            T   +++     ++
Sbjct: 134 KTAFDISIDNGNEDL 148

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 65.1 bits (160), Expect = 2e-14
 Identities = 33/125 (26%), Positives = 47/125 (37%), Gaps = 22/125 (17%)

Query: 20  PLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAAL 79
            L  AA  G  D V  L++      F  D  G +PLH+AA  G+        +V     L
Sbjct: 5   KLLEAARAGQDDEVRILMANGAP--FTTDWLGTSPLHLAAQYGH----FSTTEV-----L 53

Query: 80  ILM--------ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLE 131
           +          +   T LH   +      + +L++   D   VN+KD    T LH A   
Sbjct: 54  LRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD---VNAKDMLKMTALHWATEH 110

Query: 132 KQVEV 136
              EV
Sbjct: 111 NHQEV 115

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 50.1 bits (121), Expect = 1e-08
 Identities = 19/96 (19%), Positives = 30/96 (31%), Gaps = 23/96 (23%)

Query: 50  DGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGV---------TILHACVNYNQLES 100
           D    L  AA  G      + V+       ILM  G          + LH    Y    +
Sbjct: 1   DLGKKLLEAARAGQ----DDEVR-------ILMANGAPFTTDWLGTSPLHLAAQYGHFST 49

Query: 101 LRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
             +L+         +++     T LH+A  E    +
Sbjct: 50  TEVLLRAGVS---RDARTKVDRTPLHMAASEGHANI 82

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 70.6 bits (173), Expect = 2e-15
 Identities = 31/163 (19%), Positives = 53/163 (32%), Gaps = 26/163 (15%)

Query: 20  PLHLAAA---KGYLDIVLKLVSVNPEM----------CFARDIDGKNPLHIAAIRGNVNV 66
            L  A      G  D +  L+ V  +                  G+  LHIA  R N+ +
Sbjct: 57  CLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTL 116

Query: 67  LKELVK-------------VRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEF 113
           +  LV+              +          G   L      NQL  ++ L++       
Sbjct: 117 VTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD 176

Query: 114 VNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGL 156
           ++++D  G+T+LH  V      V    F  +  +  +  G  L
Sbjct: 177 ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKL 219

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 56.3 bits (136), Expect = 2e-10
 Identities = 22/129 (17%), Positives = 41/129 (31%), Gaps = 27/129 (20%)

Query: 20  PLHLAAAKGYLDIVLKLVSVNPEMC--FARDIDGKNPLHIAAIRGNVNVLKELVKVRPQA 77
           PL LAA    L IV  L+  + +     ARD  G   LH      +  V           
Sbjct: 151 PLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYN 210

Query: 78  ALILM---------------ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGS 122
            ++++                +G+T L    +  ++  L  +++          ++ +  
Sbjct: 211 EILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ----------REIHEP 260

Query: 123 TILHLAVLE 131
              H A   
Sbjct: 261 ECRHAAAHH 269

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 46.7 bits (111), Expect = 5e-07
 Identities = 24/148 (16%), Positives = 43/148 (29%), Gaps = 31/148 (20%)

Query: 20  PLHLAAAKGY-------LDIVLKLVSVNPEMCFARDIDGKNPLHIAAI---RGNVNVLKE 69
            +  A A+         L  + +      +  F     GK  L  A +    G  + +  
Sbjct: 16  SIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIAL 75

Query: 70  LV----KVRPQAALILME------RGVTILHACVNYNQLESLRLL------VEIRNDHEF 113
           L+    K       +         +G T LH  +    +  + LL      V+   + +F
Sbjct: 76  LLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDF 135

Query: 114 VNSKDDN-----GSTILHLAVLEKQVEV 136
                       G   L LA    Q+ +
Sbjct: 136 FKKTKGRPGFYFGELPLSLAACTNQLAI 163

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 46.3 bits (110), Expect = 7e-07
 Identities = 17/109 (15%), Positives = 39/109 (35%), Gaps = 18/109 (16%)

Query: 46  ARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALIL-------MERGVTILHACV---NY 95
              +  +  +  A  + N   L+ L+    ++   L        E G T L   +   + 
Sbjct: 8   PPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHN 67

Query: 96  NQLESLRLLVEIRNDHEF--------VNSKDDNGSTILHLAVLEKQVEV 136
            Q +++ LL+++    +                G T LH+A+  + + +
Sbjct: 68  GQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTL 116

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 46.3 bits (110), Expect = 7e-07
 Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 8/46 (17%)

Query: 20  PLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVN 65
           PL LAA+ G + ++  ++         R+I      H AA   + +
Sbjct: 236 PLALAASSGKIGVLAYILQ--------REIHEPECRHAAAHHHHHH 273

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 41.3 bits (97), Expect = 4e-05
 Identities = 16/101 (15%), Positives = 31/101 (30%), Gaps = 29/101 (28%)

Query: 14  DSRKASPLHLAAAKG---------------YLDIVLKLVSVNPEMCFARDIDGKNPLHIA 58
           DS   + LH                      + I+   +    ++    +  G  PL +A
Sbjct: 181 DSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALA 240

Query: 59  AIRGNVNVLKELVKVRPQAALILMER---GVTILHACVNYN 96
           A  G + VL             +++R        HA  +++
Sbjct: 241 ASSGKIGVLA-----------YILQREIHEPECRHAAAHHH 270

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 69.0 bits (170), Expect = 2e-15
 Identities = 31/127 (24%), Positives = 47/127 (37%), Gaps = 25/127 (19%)

Query: 20  PLHLAAAKGYLDIVLKLVSV--NPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQA 77
            L  A     L I  KL+S   N      +D  GK PL  + I G      E+       
Sbjct: 71  ALIWAVKNNRLGIAEKLLSKGSNVN---TKDFSGKTPLMWSIIFGY----SEMSYF---- 119

Query: 78  ALILM--------ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV 129
            L+            G T L     Y + E ++ L+E+  D   ++++D  G T    A 
Sbjct: 120 -LLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGAD---ISARDLTGLTAEASAR 175

Query: 130 LEKQVEV 136
           +  + EV
Sbjct: 176 IFGRQEV 182

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 67.4 bits (166), Expect = 7e-15
 Identities = 27/127 (21%), Positives = 44/127 (34%), Gaps = 25/127 (19%)

Query: 20  PLHLAAAKGYLDIVLKLVSV--NPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQA 77
           PL +A   G  + + KLV      E    +DI+G   L  A           + +     
Sbjct: 38  PLMVACMLGMENAIDKLVENFDKLE---DKDIEGSTALIWAVKNNR----LGIAEK---- 86

Query: 78  ALIL--------MERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV 129
            L+            G T L   + +   E    L+E   +   VN ++  G T L +A 
Sbjct: 87  -LLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGAN---VNDRNLEGETPLIVAS 142

Query: 130 LEKQVEV 136
              + E+
Sbjct: 143 KYGRSEI 149

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 59.7 bits (146), Expect = 5e-12
 Identities = 25/135 (18%), Positives = 44/135 (32%), Gaps = 31/135 (22%)

Query: 12  ELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELV 71
            +D        +   K     +  L          RD   + PL +A + G     +  +
Sbjct: 3   HMDKNGEIVEKIKDEKSINQNLDFLR-------NYRDSYNRTPLMVACMLGM----ENAI 51

Query: 72  KVRPQAALILMERGV----------TILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNG 121
                    L+E             T L   V  N+L     L+   ++   VN+KD +G
Sbjct: 52  D-------KLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN---VNTKDFSG 101

Query: 122 STILHLAVLEKQVEV 136
            T L  +++    E+
Sbjct: 102 KTPLMWSIIFGYSEM 116

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 49.3 bits (119), Expect = 4e-08
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 20  PLHLAAAKGYLDIVLKLVSV--NPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVR 74
           PL +A+  G  +IV KL+ +  +     ARD+ G      A I G   V+K   +VR
Sbjct: 137 PLIVASKYGRSEIVKKLLELGADIS---ARDLTGLTAEASARIFGRQEVIKIFTEVR 190

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 69.6 bits (171), Expect = 2e-15
 Identities = 25/128 (19%), Positives = 47/128 (36%), Gaps = 14/128 (10%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKE 69
                +PLH AA +G L  + + +     VN       D  G   L+ A   G+ ++++ 
Sbjct: 70  AESIDNPLHEAAKRGNLSWLRECLDNRVGVN-----GLDKAGSTALYWACHGGHKDIVEM 124

Query: 70  LVKVRPQAAL-ILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLA 128
           L   +P   L    + G T LHA       + ++LL+         + ++        +A
Sbjct: 125 LFT-QPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGAR---TDLRNIEKKLAFDMA 180

Query: 129 VLEKQVEV 136
                  +
Sbjct: 181 TNAACASL 188

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 68.8 bits (169), Expect = 3e-15
 Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 13/127 (10%)

Query: 12  ELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELV 71
            +     +      +KG   ++             +     NPLH AA RGN++ L+E +
Sbjct: 40  YITDMSDTNWWKGTSKGRTGLIPSN------YVAEQAESIDNPLHEAAKRGNLSWLRECL 93

Query: 72  KVRPQAALI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV 129
                   +  L + G T L+   +    + + +L    N    +N ++  G T LH A 
Sbjct: 94  D---NRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE--LNQQNKLGDTALHAAA 148

Query: 130 LEKQVEV 136
            +   ++
Sbjct: 149 WKGYADI 155

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 66.9 bits (164), Expect = 2e-14
 Identities = 18/121 (14%), Positives = 29/121 (23%), Gaps = 18/121 (14%)

Query: 20  PLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRP 75
            +  A          +L      +                     +G   ++        
Sbjct: 15  KVFRALYTFEPRTPDELYIEEGDII-----YITDMSDTNWWKGTSKGRTGLIPSNYVAEQ 69

Query: 76  QAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVE 135
                  E     LH       L  LR  ++ R     VN  D  GST L+ A      +
Sbjct: 70  A------ESIDNPLHEAAKRGNLSWLRECLDNRVG---VNGLDKAGSTALYWACHGGHKD 120

Query: 136 V 136
           +
Sbjct: 121 I 121

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 60.0 bits (146), Expect = 6e-12
 Identities = 20/119 (16%), Positives = 37/119 (31%), Gaps = 18/119 (15%)

Query: 20  PLHLAAAKGYLDIVLKLVS-----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVR 74
            L+ A   G+ DIV  L +     +N      ++  G   LH AA +G  ++++ L+   
Sbjct: 109 ALYWACHGGHKDIVEMLFTQPNIELN-----QQNKLGDTALHAAAWKGYADIVQLLLA-- 161

Query: 75  PQAALILM--ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLE 131
            + A   +             N      L+               +         + LE
Sbjct: 162 -KGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAV---RTLSNAEDYLDDEDSDLE 216

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 3/49 (6%), Positives = 12/49 (24%), Gaps = 1/49 (2%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRG 62
           +  K     +A       ++ K    +       + +       + +  
Sbjct: 170 NIEKKLAFDMATNAACASLLKKKQGTDAVR-TLSNAEDYLDDEDSDLEH 217

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 69.8 bits (172), Expect = 2e-15
 Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 18/130 (13%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLVS-----VNPEMCFARDIDGKNPLHIAAIRGNVNVLK 68
           D+   +PLH A +     +   L+      ++     AR  DG  PL +AA      +L+
Sbjct: 87  DNMGRTPLHAAVSADAQGVFQILIRNRATDLD-----ARMHDGTTPLILAARLAVEGMLE 141

Query: 69  ELVKVRPQAALI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILH 126
           +L+      A +  + + G + LH     N +++  +L++   +    + +++   T L 
Sbjct: 142 DLIN---SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN---KDMQNNREETPLF 195

Query: 127 LAVLEKQVEV 136
           LA  E   E 
Sbjct: 196 LAAREGSYET 205

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 67.9 bits (167), Expect = 1e-14
 Identities = 29/123 (23%), Positives = 46/123 (37%), Gaps = 17/123 (13%)

Query: 20  PLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRP 75
           PL LAA      ++  L++    VN     A D  GK+ LH AA   NV+    L+K   
Sbjct: 127 PLILAARLAVEGMLEDLINSHADVN-----AVDDLGKSALHWAAAVNNVDAAVVLLK--- 178

Query: 76  QAALILM--ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQ 133
             A   M   R  T L         E+ ++L++   +    +  D        +A     
Sbjct: 179 NGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN---RDITDHMDRLPRDIAQERMH 235

Query: 134 VEV 136
            ++
Sbjct: 236 HDI 238

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 65.2 bits (160), Expect = 1e-13
 Identities = 28/132 (21%), Positives = 51/132 (38%), Gaps = 20/132 (15%)

Query: 20  PLHLAAAKG-------------YLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNV 66
           PL +A+  G                ++   +     +    D  G+  LH+AA     + 
Sbjct: 13  PLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDA 72

Query: 67  LKELVKVRPQAALI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTI 124
            K L++    +A        G T LHA V+ +     ++L  IRN    ++++  +G+T 
Sbjct: 73  AKRLLE---ASADANIQDNMGRTPLHAAVSADAQGVFQIL--IRNRATDLDARMHDGTTP 127

Query: 125 LHLAVLEKQVEV 136
           L LA       +
Sbjct: 128 LILAARLAVEGM 139

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 54.0 bits (131), Expect = 1e-09
 Identities = 27/105 (25%), Positives = 39/105 (37%), Gaps = 16/105 (15%)

Query: 46  ARDIDGKNPLHIAAIRGNVNVLKELV--KVRPQAALILMERGV-----------TILHAC 92
            R  DG  PL IA+  G           +  P      + +G            T LH  
Sbjct: 5   VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLA 64

Query: 93  VNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVF 137
             Y++ ++ + L+E   D    N +D+ G T LH AV      VF
Sbjct: 65  ARYSRSDAAKRLLEASAD---ANIQDNMGRTPLHAAVSADAQGVF 106

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 50.5 bits (122), Expect = 2e-08
 Identities = 20/100 (20%), Positives = 32/100 (32%), Gaps = 26/100 (26%)

Query: 19  SPLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVR 74
           S LH AAA   +D  + L+      +      ++   + PL +AA  G+     E  KV 
Sbjct: 159 SALHWAAAVNNVDAAVVLLKNGANKD-----MQNNREETPLFLAAREGS----YETAKV- 208

Query: 75  PQAALILM--------ERGVTILHACVNYNQLESLRLLVE 106
               L+                          + +RLL  
Sbjct: 209 ----LLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDL 244

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 70.3 bits (173), Expect = 2e-15
 Identities = 22/124 (17%), Positives = 40/124 (32%), Gaps = 19/124 (15%)

Query: 20  PLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRP 75
           PLH AA      IV  L+      +       D  G   L+ A   GN+  +K  VK   
Sbjct: 65  PLHQAATLEDTKIVKILLFSGLDDS-----QFDDKGNTALYYAVDSGNMQTVKLFVK--- 116

Query: 76  QAALILM---ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEK 132
           +   ++        T  +  V  N +  +   +                 + +H+ +   
Sbjct: 117 KNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS----TFDLAILLSCIHITIKNG 172

Query: 133 QVEV 136
            V++
Sbjct: 173 HVDM 176

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 67.9 bits (167), Expect = 2e-14
 Identities = 17/119 (14%), Positives = 44/119 (36%), Gaps = 8/119 (6%)

Query: 20  PLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKN-PLHIAAIRGNVNVLKELVKVRPQAA 78
            L+ A   G +  V   V  N  +       G     + A +  +V+++   +      +
Sbjct: 98  ALYYAVDSGNMQTVKLFVKKNWRLM-FYGKTGWKTSFYHAVMLNDVSIVSYFLSEI--PS 154

Query: 79  LILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGST-ILHLAVLEKQVEV 136
              +   ++ +H  +    ++ + LL++        N+ +       + LA+  K +E+
Sbjct: 155 TFDLAILLSCIHITIKNGHVDMMILLLDYMTS---TNTNNSLLFIPDIKLAIDNKDIEM 210

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 63.3 bits (155), Expect = 6e-13
 Identities = 23/124 (18%), Positives = 49/124 (39%), Gaps = 20/124 (16%)

Query: 20  PLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRP 75
             + A A   + +V  L++     N        ++ + PLH AA   +  ++K L+    
Sbjct: 34  ASYYAIADNNVRLVCTLLNAGALKN-------LLENEFPLHQAATLEDTKIVKILLF--- 83

Query: 76  QAALI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNG-STILHLAVLEK 132
                    ++G T L+  V+   +++++L V+       +      G  T  + AV+  
Sbjct: 84  SGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR---LMFYGKTGWKTSFYHAVMLN 140

Query: 133 QVEV 136
            V +
Sbjct: 141 DVSI 144

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 62.2 bits (152), Expect = 2e-12
 Identities = 22/116 (18%), Positives = 41/116 (35%), Gaps = 9/116 (7%)

Query: 21  LHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALI 80
           L          +   L S +       D+ G +  + A    NV ++  L+      AL 
Sbjct: 4   LSRINTWKSKQLKSFLSSKDTF---KADVHGHSASYYAIADNNVRLVCTLLN---AGALK 57

Query: 81  LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
            +      LH        + +++L+    D    +  DD G+T L+ AV    ++ 
Sbjct: 58  NLLENEFPLHQAATLEDTKIVKILLFSGLD---DSQFDDKGNTALYYAVDSGNMQT 110

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 59.8 bits (146), Expect = 1e-11
 Identities = 19/140 (13%), Positives = 46/140 (32%), Gaps = 29/140 (20%)

Query: 19  SPLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNP-LHIAAIRGNVNVLKELVKV 73
           S +H+    G++D+++ L+      N       +     P + +A    ++ +L+     
Sbjct: 163 SCIHITIKNGHVDMMILLLDYMTSTN-----TNNSLLFIPDIKLAIDNKDIEMLQ----- 212

Query: 74  RPQAALILMERGVTI---LHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVL 130
                  L +  + I       V  +  E  ++++E   +     S        +     
Sbjct: 213 ------ALFKYDINIYSANLENVLLDDAEIAKMIIEKHVE---YKSDSYTKDLDIVKN-- 261

Query: 131 EKQVEVFYMDFDRNNMDNNI 150
            K  E+   + +   M  N 
Sbjct: 262 NKLDEIISKNKELRLMYVNC 281

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 67.9 bits (167), Expect = 2e-15
 Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 15/122 (12%)

Query: 20  PLHLAAAKGYLDIVLKLVS--VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVR--P 75
            L  AAA+G ++ V  L+    NP    A +  G+ P+ +    G+  V + L+     P
Sbjct: 15  WLATAAARGRVEEVRALLEAGANPN---APNSYGRRPIQVMM-MGSARVAELLLLHGAEP 70

Query: 76  QAALILMERGVTI-LHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQV 134
             A       +T  +H       L++L +L         ++ +D  G   + LA      
Sbjct: 71  NCA---DPATLTRPVHDAAREGFLDTLVVLHRAGAR---LDVRDAWGRLPVDLAEELGHR 124

Query: 135 EV 136
           +V
Sbjct: 125 DV 126

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 52.9 bits (128), Expect = 1e-09
 Identities = 20/130 (15%), Positives = 35/130 (26%), Gaps = 24/130 (18%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGK-NPLHIAAIRGNVNVLK 68
           +S    P+ +    G   +   L+      N       D      P+H AA  G ++ L 
Sbjct: 42  NSYGRRPIQVMM-MGSARVAELLLLHGAEPN-----CADPATLTRPVHDAAREGFLDTLV 95

Query: 69  ELVKV--RPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILH 126
            L +   R          G   +         +  R L           +    GS    
Sbjct: 96  VLHRAGARLDVR---DAWGRLPVDLAEELGHRDVARYLRA--------AAGGTRGSNHAR 144

Query: 127 LAVLEKQVEV 136
           +   E   ++
Sbjct: 145 IDAAEGPSDI 154

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 44.4 bits (106), Expect = 1e-06
 Identities = 18/95 (18%), Positives = 30/95 (31%), Gaps = 12/95 (12%)

Query: 46  ARDIDGKNPLHIAAIRGNVNVLKELVK--VRPQAALILMERGVTILH-ACVNYNQLESLR 102
           +      + L  AA RG V  ++ L++    P A       G   +              
Sbjct: 7   SSMEPSADWLATAAARGRVEEVRALLEAGANPNAP---NSYGRRPIQVMM--MGSARVAE 61

Query: 103 LLVEIRNDHEFVNSKDDNGSTI-LHLAVLEKQVEV 136
           LL+    +    N  D    T  +H A  E  ++ 
Sbjct: 62  LLLLHGAE---PNCADPATLTRPVHDAAREGFLDT 93

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 69.6 bits (171), Expect = 3e-15
 Identities = 30/132 (22%), Positives = 44/132 (33%), Gaps = 14/132 (10%)

Query: 20  PLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV-- 73
            LH A   G+ +IV  LV     VN     A D DG  PLH AA   NV V K LV+   
Sbjct: 73  ALHNAVCAGHTEIVKFLVQFGVNVN-----AADSDGWTPLHCAASCNNVQVCKFLVESGA 127

Query: 74  RPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQ 133
              A      +        +     +  + L  ++     +   +      L     +  
Sbjct: 128 AVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEK---MGIMNKGVIYALWDYEPQND 184

Query: 134 VEVFYMDFDRNN 145
            E+   + D   
Sbjct: 185 DELPMKEGDCMT 196

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 67.6 bits (166), Expect = 1e-14
 Identities = 23/121 (19%), Positives = 46/121 (38%), Gaps = 10/121 (8%)

Query: 20  PLHLAAAKGYLDIVLKLVSV--NPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQA 77
            L  ++ +G  D+V +++    +P      + +G   LH A   G+  ++K LV+     
Sbjct: 40  LLLDSSLEGEFDLVQRIIYEVDDPS---LPNDEGITALHNAVCAGHTEIVKFLVQ---FG 93

Query: 78  ALI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVE 135
             +      G T LH   + N ++  + LVE       +   D   +      + E   +
Sbjct: 94  VNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQ 153

Query: 136 V 136
            
Sbjct: 154 C 154

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 66.5 bits (163), Expect = 3e-14
 Identities = 22/123 (17%), Positives = 45/123 (36%), Gaps = 18/123 (14%)

Query: 20  PLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRP 75
            L             + ++    V        +      L  +++ G  ++++ ++    
Sbjct: 8   SLPPGKRTNLRKTGSERIAHGMRVK------FNPLPLALLLDSSLEGEFDLVQRIIY--- 58

Query: 76  QAALI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQ 133
           +        + G+T LH  V     E ++ LV+   +   VN+ D +G T LH A     
Sbjct: 59  EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN---VNAADSDGWTPLHCAASCNN 115

Query: 134 VEV 136
           V+V
Sbjct: 116 VQV 118

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 58.4 bits (142), Expect = 3e-11
 Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 5/89 (5%)

Query: 48  DIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEI 107
           +I G+  L             E +       +      + +L       + + ++ ++  
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHG--MRVKFNPLPLALLLDSSLEGEFDLVQRIIYE 59

Query: 108 RNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
            +D    +  +D G T LH AV     E+
Sbjct: 60  VDD---PSLPNDEGITALHNAVCAGHTEI 85

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 41.8 bits (99), Expect = 3e-05
 Identities = 8/55 (14%), Positives = 16/55 (29%), Gaps = 1/55 (1%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLK 68
           D + A+       +GY      L  V  +M    +      L     + +  +  
Sbjct: 136 DMQTAADKCEEMEEGYTQCSQFLYGVQEKM-GIMNKGVIYALWDYEPQNDDELPM 189

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 66.2 bits (163), Expect = 4e-15
 Identities = 36/113 (31%), Positives = 51/113 (45%), Gaps = 17/113 (15%)

Query: 20  PLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRP 75
           PLH AA  G+ + V KL+S    VN     AR  DG  PLH+AA  G+  ++K L+    
Sbjct: 12  PLHNAAKNGHAEEVKKLLSKGADVN-----ARSKDGNTPLHLAAKNGHAEIVKLLLA--- 63

Query: 76  QAALI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILH 126
           + A +    + G T  H        E ++LL     D   VN++    S   H
Sbjct: 64  KGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD---VNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 51.6 bits (125), Expect = 1e-09
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 8/91 (8%)

Query: 48  DIDGKNPLHIAAIRGNVNVLKELVKVRPQAALI--LMERGVTILHACVNYNQLESLRLLV 105
             DG  PLH AA  G+   +K+L+    + A +    + G T LH        E ++LL+
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLS---KGADVNARSKDGNTPLHLAAKNGHAEIVKLLL 62

Query: 106 EIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
               D   VN++  +G+T  HLA      E+
Sbjct: 63  AKGAD---VNARSKDGNTPEHLAKKNGHHEI 90

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 67.4 bits (166), Expect = 4e-15
 Identities = 32/125 (25%), Positives = 46/125 (36%), Gaps = 20/125 (16%)

Query: 20  PLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAAL 79
            L  AA  G ++ V KL +V    C   +     PLH AA          +V+      L
Sbjct: 11  QLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNR----VSVVEY-----L 61

Query: 80  ILM--------ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLE 131
           +          + G+  LH   +Y   E   LLV+       VN  D    T LH A  +
Sbjct: 62  LQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV---VNVADLWKFTPLHEAAAK 118

Query: 132 KQVEV 136
            + E+
Sbjct: 119 GKYEI 123

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 66.3 bits (163), Expect = 1e-14
 Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 29/129 (22%)

Query: 12  ELDSRKASPLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVL 67
           +++ R+++PLH AA    + +V  L+     V+     A+D  G  PLH A   G+    
Sbjct: 37  DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH-----AKDKGGLVPLHNACSYGH---- 87

Query: 68  KELVKVRPQAALILM--------ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDD 119
            E+ ++     L+              T LH      + E  +LL++   D      K+ 
Sbjct: 88  YEVAEL-----LVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD---PTKKNR 139

Query: 120 NGSTILHLA 128
           +G+T L L 
Sbjct: 140 DGNTPLDLV 148

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 53.2 bits (129), Expect = 9e-10
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 7/91 (7%)

Query: 48  DIDGKNPLHIAAIRGNVNVLKELVKVRPQAALI--LMERGVTILHACVNYNQLESLRLLV 105
           + +    L  AA  G+V  +K+L  V  Q+     +  R  T LH    YN++  +  L+
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTV--QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL 62

Query: 106 EIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
           +   D   V++KD  G   LH A      EV
Sbjct: 63  QHGAD---VHAKDKGGLVPLHNACSYGHYEV 90

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 66.6 bits (164), Expect = 5e-15
 Identities = 33/129 (25%), Positives = 52/129 (40%), Gaps = 29/129 (22%)

Query: 20  PLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRP 75
            L  AA  G  D V  L++    VN     A+D  G  PL++A   G+     E+V+V  
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVN-----AKDEYGLTPLYLATAHGH----LEIVEV-- 65

Query: 76  QAALILM--------ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHL 127
              L+            G T LH       LE   +L++   D   VN++D  G T   +
Sbjct: 66  ---LLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGAD---VNAQDKFGKTAFDI 119

Query: 128 AVLEKQVEV 136
           ++     ++
Sbjct: 120 SIGNGNEDL 128

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 46.6 bits (112), Expect = 2e-07
 Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 24/97 (24%)

Query: 50  DGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGV----------TILHACVNYNQLE 99
           D    L  AA  G      + V+       ILM  G           T L+    +  LE
Sbjct: 13  DLGKKLLEAARAGQ----DDEVR-------ILMANGADVNAKDEYGLTPLYLATAHGHLE 61

Query: 100 SLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
            + +L++   D   VN+ D  G T LHLA     +E+
Sbjct: 62  IVEVLLKNGAD---VNAVDAIGFTPLHLAAFIGHLEI 95

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 46.2 bits (111), Expect = 3e-07
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 9/57 (15%)

Query: 20  PLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK 72
           PLHLAA  G+L+I   L+     VN     A+D  GK    I+   GN ++ + L K
Sbjct: 83  PLHLAAFIGHLEIAEVLLKHGADVN-----AQDKFGKTAFDISIGNGNEDLAEILQK 134

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 67.9 bits (167), Expect = 6e-15
 Identities = 25/124 (20%), Positives = 52/124 (41%), Gaps = 17/124 (13%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKE 69
           D+   +PL++A     ++I   L+     +N      ++    +P   A  +G   +L  
Sbjct: 36  DTEGNTPLNIAVHNNDIEIAKALIDRGADIN-----LQNSISDSPYLYAGAQGRTEILAY 90

Query: 70  LVKVRPQAALILMER---GVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILH 126
           ++K    A   L +    G   L        +++++LL  + +  E ++ ++D G T L 
Sbjct: 91  MLK---HATPDLNKHNRYGGNALIPAAEKGHIDNVKLL--LEDGREDIDFQNDFGYTALI 145

Query: 127 LAVL 130
            AV 
Sbjct: 146 EAVG 149

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 67.1 bits (165), Expect = 1e-14
 Identities = 19/127 (14%), Positives = 40/127 (31%), Gaps = 12/127 (9%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLVS--VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELV 71
                + L  A  +    +   L       +     D +G  PL+IA    ++ + K L+
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVD---EVDTEGNTPLNIAVHNNDIEIAKALI 59

Query: 72  KVRPQAALI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV 129
                 A I        +         + E L  +  +++    +N  +  G   L  A 
Sbjct: 60  DRG---ADINLQNSISDSPYLYAGAQGRTEILAYM--LKHATPDLNKHNRYGGNALIPAA 114

Query: 130 LEKQVEV 136
            +  ++ 
Sbjct: 115 EKGHIDN 121

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 62.1 bits (152), Expect = 1e-12
 Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 18/133 (13%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLVS---VNPEMCFARDIDGKNPLHIAAIRGNVNVLKEL 70
           +S   SP   A A+G  +I+  ++     +       +  G N L  AA +G+++ +K L
Sbjct: 69  NSISDSPYLYAGAQGRTEILAYMLKHATPDLN---KHNRYGGNALIPAAEKGHIDNVKLL 125

Query: 71  VKVRPQAALI--LMERGVTILH-----ACVNYNQLESLRLLVEIRNDHEFVNSKDDNGST 123
           ++       I    + G T L         N    + ++LL+E   D    + KD++G T
Sbjct: 126 LEDG--REDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGAD---QSIKDNSGRT 180

Query: 124 ILHLAVLEKQVEV 136
            +  A  +   E+
Sbjct: 181 AMDYANQKGYTEI 193

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 52.5 bits (127), Expect = 3e-09
 Identities = 16/92 (17%), Positives = 34/92 (36%), Gaps = 8/92 (8%)

Query: 47  RDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALI--LMERGVTILHACVNYNQLESLRLL 104
           +  +    L  A  R    V + L         +  +   G T L+  V+ N +E  + L
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEILQD---TTYQVDEVDTEGNTPLNIAVHNNDIEIAKAL 58

Query: 105 VEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
           ++   D   +N ++    +    A  + + E+
Sbjct: 59  IDRGAD---INLQNSISDSPYLYAGAQGRTEI 87

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 47.4 bits (114), Expect = 2e-07
 Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 24/101 (23%)

Query: 20  PLHLAAAKGYLDIVLKLVS---VNPEMCFARDIDGKNPLHIAAIRGNV-NVLKELVKVRP 75
            L  AA KG++D V  L+     + +    ++  G   L  A        + +++VK   
Sbjct: 109 ALIPAAEKGHIDNVKLLLEDGREDID---FQNDFGYTALIEAVGLREGNQLYQDIVK--- 162

Query: 76  QAALILMERG----------VTILHACVNYNQLESLRLLVE 106
               +LME G           T +         E  ++L +
Sbjct: 163 ----LLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 67.0 bits (165), Expect = 6e-15
 Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 30/129 (23%)

Query: 20  PLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRP 75
            L  AAA+G L+ +  L+     VN     A++  G+  L +  + GN     E+ +   
Sbjct: 8   ELASAAARGDLEQLTSLLQNNVNVN-----AQNGFGRTALQVMKL-GN----PEIARR-- 55

Query: 76  QAALIL--------MERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHL 127
              L+L           G  ++H       L++L+ L+E + D   VN +D+ G+  LHL
Sbjct: 56  ---LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD---VNIEDNEGNLPLHL 109

Query: 128 AVLEKQVEV 136
           A  E  + V
Sbjct: 110 AAKEGHLRV 118

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 66.3 bits (163), Expect = 1e-14
 Identities = 24/129 (18%), Positives = 41/129 (31%), Gaps = 29/129 (22%)

Query: 20  PLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRP 75
            L      G  +I  +L+      +      +D  G   +H AA  G      + ++   
Sbjct: 41  ALQ-VMKLGNPEIARRLLLRGANPD-----LKDRTGFAVIHDAARAGF----LDTLQT-- 88

Query: 76  QAALILM--------ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHL 127
              L+            G   LH       L  +  L  +++    V  ++  G T   L
Sbjct: 89  ---LLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL--VKHTASNVGHRNHKGDTACDL 143

Query: 128 AVLEKQVEV 136
           A L  + EV
Sbjct: 144 ARLYGRNEV 152

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 53.9 bits (131), Expect = 5e-10
 Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 15/94 (15%)

Query: 20  PLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRP 75
            +H AA  G+LD +  L+     VN       D +G  PLH+AA  G++ V++ LVK   
Sbjct: 73  VIHDAARAGFLDTLQTLLEFQADVN-----IEDNEGNLPLHLAAKEGHLRVVEFLVK--- 124

Query: 76  QAALILMER---GVTILHACVNYNQLESLRLLVE 106
             A  +  R   G T       Y + E + L+  
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 48.1 bits (116), Expect = 7e-08
 Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 25/97 (25%)

Query: 50  DGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGV----------TILHACVNYNQLE 99
              N L  AA RG+     E +         L++  V          T L         E
Sbjct: 4   PWGNELASAAARGD----LEQLT-------SLLQNNVNVNAQNGFGRTALQVMK-LGNPE 51

Query: 100 SLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
             R L+    +    + KD  G  ++H A     ++ 
Sbjct: 52  IARRLLLRGAN---PDLKDRTGFAVIHDAARAGFLDT 85

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 67.1 bits (165), Expect = 8e-15
 Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 11/120 (9%)

Query: 20  PLHLAAAKGYLDIVLKLVS---VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQ 76
           P   AA K     + +L+    V+     A D +G+  L   A  G+   ++ L +    
Sbjct: 47  PWWTAARKADEQALSQLLEDRDVD-----AVDENGRTALLFVAGLGSDKCVRLLAEAGAD 101

Query: 77  AALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
                M  G+T LH    Y + E +  LVE+  D   +  +D+ G T L LA    +   
Sbjct: 102 LDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD---IEVEDERGLTALELAREILKTTP 158

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 55.6 bits (135), Expect = 1e-10
 Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 12/121 (9%)

Query: 18  ASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK-VRPQ 76
           A    +    G+    +    +  ++      + + P   AA + +   L +L++     
Sbjct: 15  AMEYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKADEQALSQLLEDRDVD 70

Query: 77  AALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDN-GSTILHLAVLEKQVE 135
           A     E G T L         + +RLL E   D   ++ +D   G T LH+A    + E
Sbjct: 71  AV---DENGRTALLFVAGLGSDKCVRLLAEAGAD---LDHRDMRGGLTALHMAAGYVRPE 124

Query: 136 V 136
           V
Sbjct: 125 V 125

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 49.0 bits (118), Expect = 4e-08
 Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 8/87 (9%)

Query: 50  DGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRN 109
           +G     I    G+             AA + +    T           ++L  L+E R+
Sbjct: 13  EGAMEYLIEWKDGHSPSWVPSSY---IAADV-VSEYETPWWTAARKADEQALSQLLEDRD 68

Query: 110 DHEFVNSKDDNGSTILHLAVLEKQVEV 136
               V++ D+NG T L         + 
Sbjct: 69  ----VDAVDENGRTALLFVAGLGSDKC 91

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 47.1 bits (113), Expect = 2e-07
 Identities = 11/57 (19%), Positives = 18/57 (31%), Gaps = 9/57 (15%)

Query: 20  PLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK 72
            LH+AA     ++V  LV     +        D  G   L +A            ++
Sbjct: 113 ALHMAAGYVRPEVVEALVELGADIE-----VEDERGLTALELAREILKTTPKGNPMQ 164

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 68.3 bits (168), Expect = 1e-14
 Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 13/121 (10%)

Query: 20  PLHLAAAKGYLDIVLKLVS--VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQA 77
               A + G  + VL+L+    +       ++DG   LH A I  NV+++K LV+     
Sbjct: 43  VFLAACSSGDTEEVLRLLERGADIN---YANVDGLTALHQACIDDNVDMVKFLVE---NG 96

Query: 78  ALI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVE 135
           A I      G   LHA  +   L+    L+        V + +  G T L +A  E   E
Sbjct: 97  ANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAH---VGAVNSEGDTPLDIAEEEAMEE 153

Query: 136 V 136
           +
Sbjct: 154 L 154

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 67.9 bits (167), Expect = 2e-14
 Identities = 29/121 (23%), Positives = 43/121 (35%), Gaps = 19/121 (15%)

Query: 20  PLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRP 75
           PLH AA+ GYLDI   L+S    V      A + +G  PL IA       +L+  V  + 
Sbjct: 109 PLHAAASCGYLDIAEYLISQGAHVG-----AVNSEGDTPLDIAEEEAMEELLQNEVNRQG 163

Query: 76  QAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVE 135
                                  ++ + L     +         +G T LH+A  +   E
Sbjct: 164 -------VDIEAARKEEERIMLRDARQWLNSGHIN---DVRHAKSGGTALHVAAAKGYTE 213

Query: 136 V 136
           V
Sbjct: 214 V 214

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 64.8 bits (159), Expect = 3e-13
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 18/129 (13%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKE 69
           D+++     L    G    +   V             +  DG      A   G+   +  
Sbjct: 5   DAKQKRNEQLKRWIGSETDLEPPVVKRKKTK-----VKFDDGA-VFLAACSSGDTEEVLR 58

Query: 70  LVK--VRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHL 127
           L++       A      G+T LH     + ++ ++ LVE   +   +N  D+ G   LH 
Sbjct: 59  LLERGADINYA---NVDGLTALHQACIDDNVDMVKFLVENGAN---INQPDNEGWIPLHA 112

Query: 128 AVLEKQVEV 136
           A     +++
Sbjct: 113 AASCGYLDI 121

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 61.0 bits (149), Expect = 5e-12
 Identities = 27/118 (22%), Positives = 42/118 (35%), Gaps = 17/118 (14%)

Query: 20  PLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRP 75
                      D    L S                G   LH+AA +G   VLK L++   
Sbjct: 169 ARKEEERIMLRDARQWLNSGHINDV-----RHAKSGGTALHVAAAKGYTEVLKLLIQ--- 220

Query: 76  QAALI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLE 131
               +      G T LHA  ++ + E+ R+LVE   D   + + +  G T   +A  +
Sbjct: 221 ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCD---MEAVNKVGQTAFDVADED 275

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 60.6 bits (148), Expect = 7e-12
 Identities = 26/119 (21%), Positives = 42/119 (35%), Gaps = 15/119 (12%)

Query: 20  PLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAAL 79
           PL +A  +   +++   V+          +D +            +  + L         
Sbjct: 142 PLDIAEEEAMEELLQNEVNRQ-------GVDIEAARKEEERIMLRDARQWLNS---GHIN 191

Query: 80  I--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
                + G T LH        E L+LL++ R D   VN KD +G T LH A    + E 
Sbjct: 192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD---VNIKDYDGWTPLHAAAHWGKEEA 247

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 58.3 bits (142), Expect = 4e-11
 Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 18/112 (16%)

Query: 18  ASPLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
            + LH+AAAKGY +++  L+     VN      +D DG  PLH AA  G     + LV+ 
Sbjct: 200 GTALHVAAAKGYTEVLKLLIQARYDVN-----IKDYDGWTPLHAAAHWGKEEACRILVE- 253

Query: 74  RPQAALILM--ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGST 123
                 +    + G T             L  L E++     ++S+     +
Sbjct: 254 --NLCDMEAVNKVGQTAFDVADEDI----LGYLEELQKKQNLLHSEKREKKS 299

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 51.3 bits (124), Expect = 1e-08
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 5/91 (5%)

Query: 46  ARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLV 105
             D   K    +    G+   L+  V  R +   +  + G   L AC +    E +  L+
Sbjct: 3   MADAKQKRNEQLKRWIGSETDLEPPVVKRKKTK-VKFDDGAVFLAAC-SSGDTEEVLRLL 60

Query: 106 EIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
           E   D   +N  + +G T LH A ++  V++
Sbjct: 61  ERGAD---INYANVDGLTALHQACIDDNVDM 88

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 65.2 bits (160), Expect = 2e-14
 Identities = 25/130 (19%), Positives = 49/130 (37%), Gaps = 19/130 (14%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKE 69
                + L  AAA+G ++ V +L+      N     A +  G+ P+ +    G+  V + 
Sbjct: 9   GGSSDAGLATAAARGQVETVRQLLEAGADPN-----ALNRFGRRPIQVMM-MGSAQVAEL 62

Query: 70  LVKVR--PQAALILMERGVTI-LHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILH 126
           L+     P  A       +T  +H       L++L +L         ++  D  G   + 
Sbjct: 63  LLLHGAEPNCA---DPATLTRPVHDAAREGFLDTLVVLHRAGAR---LDVCDAWGRLPVD 116

Query: 127 LAVLEKQVEV 136
           LA  +   ++
Sbjct: 117 LAEEQGHRDI 126

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 52.4 bits (127), Expect = 1e-09
 Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 9/58 (15%)

Query: 19  SPLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK 72
            P+H AA +G+LD ++ L      ++       D  G+ P+ +A  +G+ ++ + L  
Sbjct: 80  RPVHDAAREGFLDTLVVLHRAGARLD-----VCDAWGRLPVDLAEEQGHRDIARYLHA 132

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 47.8 bits (115), Expect = 6e-08
 Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 10/94 (10%)

Query: 46  ARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALI--LMERGVTILHACVNYNQLESLRL 103
                    L  AA RG V  +++L++     A    L   G   +   +     +   L
Sbjct: 7   MLGGSSDAGLATAAARGQVETVRQLLE---AGADPNALNRFGRRPIQVMMM-GSAQVAEL 62

Query: 104 LVEIRNDHEFVNSKDDNGSTI-LHLAVLEKQVEV 136
           L+    +    N  D    T  +H A  E  ++ 
Sbjct: 63  LLLHGAE---PNCADPATLTRPVHDAAREGFLDT 93

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 46.7 bits (112), Expect = 2e-07
 Identities = 16/94 (17%), Positives = 26/94 (27%), Gaps = 16/94 (17%)

Query: 20  PLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGK-NPLHIAAIRGNVNVLKELVKV- 73
           P+ +    G   +   L+      N       D      P+H AA  G ++ L  L +  
Sbjct: 48  PIQVMM-MGSAQVAELLLLHGAEPN-----CADPATLTRPVHDAAREGFLDTLVVLHRAG 101

Query: 74  -RPQAALILMERGVTILHACVNYNQLESLRLLVE 106
            R          G   +         +  R L  
Sbjct: 102 ARLDVC---DAWGRLPVDLAEEQGHRDIARYLHA 132

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 67.6 bits (166), Expect = 2e-14
 Identities = 24/124 (19%), Positives = 41/124 (33%), Gaps = 18/124 (14%)

Query: 20  PLHLAAAKGYLDIVLKLVS----VNPEMCFARDID-GKNPLHIAAIRGNVNVLKELVKVR 74
           PLH+A      ++V  L      +N       +   G+ PLH+A      +VL+ L+K  
Sbjct: 161 PLHVAVIHKDAEMVRLLRDAGADLN-----KPEPTCGRTPLHLAVEAQAASVLELLLK-- 213

Query: 75  PQAALI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEK 132
              A     M  G T L + +        RLL               +  +    +  + 
Sbjct: 214 -AGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP---EPEDGGDKLSPCSSSGSDS 269

Query: 133 QVEV 136
             + 
Sbjct: 270 DSDN 273

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 66.0 bits (162), Expect = 7e-14
 Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 13/122 (10%)

Query: 20  PLHLAAAKGYLDIVLKL-----VSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVR 74
           P  + +     +          + +      A + DG  PLH+A I  +  +++ L    
Sbjct: 127 PAAVDSQPNPENEEEPRDEDWRLQLE-----AENYDGHTPLHVAVIHKDAEMVRLLRDAG 181

Query: 75  PQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQV 134
                     G T LH  V       L LL++   D     ++   G T L  A+L    
Sbjct: 182 ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD---PTARMYGGRTPLGSALLRPNP 238

Query: 135 EV 136
            +
Sbjct: 239 IL 240

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 57.9 bits (141), Expect = 5e-11
 Identities = 21/117 (17%), Positives = 37/117 (31%), Gaps = 10/117 (8%)

Query: 20  PLHLAAAKGYLDIVLKLVS--VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQA 77
            LHLA    +   +  L+      E    ++  G+  LH+AAI G  + +++L       
Sbjct: 12  ALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYA---AG 68

Query: 78  ALI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEK 132
           A +      G T LH            +L++ R           +            
Sbjct: 69  AGVLVAERGGHTALHLACRVRAHTCACVLLQPRPS---HPRDASDTYLTQSQDCTPD 122

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 56.4 bits (137), Expect = 2e-10
 Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 5/93 (5%)

Query: 46  ARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILM--ERGVTILHACVNYNQLESLRL 103
               DG   LH+A I  +   L  L+        + +  + G T LH      +  ++  
Sbjct: 4   YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEK 63

Query: 104 LVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
           L         V   +  G T LHLA   +    
Sbjct: 64  LYAAGAG---VLVAERGGHTALHLACRVRAHTC 93

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 52.2 bits (126), Expect = 6e-09
 Identities = 27/138 (19%), Positives = 41/138 (29%), Gaps = 32/138 (23%)

Query: 20  PLHLAAAKGYLDIVLKLVS---------VNPEMCFARDIDGKN---PLHIAAIRGNVNVL 67
            LHLA           L+           +  +  ++D        P  + +     N  
Sbjct: 81  ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEE 140

Query: 68  KELVKVRPQAALILM--------ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDD 119
           +                        G T LH  V +   E +RLL +   D   +N  + 
Sbjct: 141 EPR--------DEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD---LNKPEP 189

Query: 120 N-GSTILHLAVLEKQVEV 136
             G T LHLAV  +   V
Sbjct: 190 TCGRTPLHLAVEAQAASV 207

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 66.9 bits (164), Expect = 2e-14
 Identities = 28/142 (19%), Positives = 42/142 (29%), Gaps = 23/142 (16%)

Query: 20  PLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRP 75
            LH A       IV  L++    VN     + D  G  PLH AA   +  +   LV+   
Sbjct: 57  ALHNAICGANYSIVDFLITAGANVN-----SPDSHGWTPLHCAASCNDTVICMALVQ--- 108

Query: 76  QAALIL---MERGVTILHACVNY--NQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVL 130
             A I    +  G T    C  Y     +    L ++      +   +      L     
Sbjct: 109 HGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQS---MGLMNSGAVYALWDYSA 165

Query: 131 EKQVEVFYM---DFDRNNMDNN 149
           E   E+ +           D  
Sbjct: 166 EFGDELSFREGESVTVLRRDGP 187

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 60.7 bits (148), Expect = 4e-12
 Identities = 24/114 (21%), Positives = 41/114 (35%), Gaps = 14/114 (12%)

Query: 20  PLHLAAAKGYLDIVLKLVS--VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQA 77
            L  AA  G L++V + V    +P      + +G   LH A    N +++  L+      
Sbjct: 24  LLLDAALTGELEVVQQAVKEMNDPS---QPNEEGITALHNAICGANYSIVDFLIT---AG 77

Query: 78  ALI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDN-GSTILHLA 128
           A +      G T LH   + N       LV+       + +   + G+T     
Sbjct: 78  ANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAA---IFATTLSDGATAFEKC 128

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 53.4 bits (129), Expect = 2e-09
 Identities = 27/121 (22%), Positives = 38/121 (31%), Gaps = 11/121 (9%)

Query: 20  PLHLAAAKGYLDIVLKLVSVNPEMCFARDI-DGKNPLHIAAI--RGNVNVLKELVKVRPQ 76
           PLH AA+     I + LV     + FA  + DG            G  +    L  V  +
Sbjct: 90  PLHCAASCNDTVICMALVQHGAAI-FATTLSDGATAFEKCDPYREGYADCATYLADV--E 146

Query: 77  AALILMER-GVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVE 135
            ++ LM    V  L    +Y+      L          V  +D    T    A L  Q  
Sbjct: 147 QSMGLMNSGAVYALW---DYSAEFGDELSFREGESVT-VLRRDGPEETDWWWAALHGQEG 202

Query: 136 V 136
            
Sbjct: 203 Y 203

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 49.6 bits (119), Expect = 5e-08
 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 8/91 (8%)

Query: 48  DIDGKNPLHIAAIRGNVNVLKELVKVRPQAALI--LMERGVTILHACVNYNQLESLRLLV 105
            ++    L  AA+ G + V+++ VK   +        E G+T LH  +       +  L+
Sbjct: 18  RLNPLVLLLDAALTGELEVVQQAVK---EMNDPSQPNEEGITALHNAICGANYSIVDFLI 74

Query: 106 EIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
               +   VNS D +G T LH A       +
Sbjct: 75  TAGAN---VNSPDSHGWTPLHCAASCNDTVI 102

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 37.2 bits (87), Expect = 9e-04
 Identities = 10/66 (15%), Positives = 20/66 (30%), Gaps = 2/66 (3%)

Query: 1   EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
             L    +  G ++S     L    +  + D +      +  +   RD   +     AA+
Sbjct: 140 TYLADVEQSMGLMNSGAVYALW-DYSAEFGDELSFREGESVTV-LRRDGPEETDWWWAAL 197

Query: 61  RGNVNV 66
            G    
Sbjct: 198 HGQEGY 203

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 66.3 bits (162), Expect = 5e-14
 Identities = 28/160 (17%), Positives = 47/160 (29%), Gaps = 26/160 (16%)

Query: 20  PLHLAA---AKGYLDIVLKLVSVNPEM----------CFARDIDGKNPLHIAAIRGNVNV 66
            L  A    + G  D +  L+ +  +                  G+  LHIA  R   + 
Sbjct: 49  CLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHY 108

Query: 67  LKELVK-------------VRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEF 113
           ++ LV+              +P+        G   L      NQ   +  L E  +    
Sbjct: 109 VELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQAD 168

Query: 114 VNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYG 153
           +  +D  G+T+LH  V           F     D  +   
Sbjct: 169 LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKC 208

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 59.4 bits (144), Expect = 1e-11
 Identities = 30/154 (19%), Positives = 57/154 (37%), Gaps = 28/154 (18%)

Query: 12  ELDSRKASPLHLAAAKGYLDIVLKLVS----VN---------PEMCFARDIDGKNPLHIA 58
           ++  R  + LH+A  +     V  LV     V+         P+        G+ PL +A
Sbjct: 88  DVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLA 147

Query: 59  AIRGNVNVLKELVKVRPQAALILM--ERGVTILHACVNYN---------QLESLRLLVE- 106
           A     +++  L +   + A +     RG T+LHA V              +   LL+  
Sbjct: 148 ACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIK 207

Query: 107 ---IRNDHEFVNSKDDNGSTILHLAVLEKQVEVF 137
              +  D       +++G + L +A    ++ +F
Sbjct: 208 CAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIF 241

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 44.4 bits (105), Expect = 3e-06
 Identities = 27/149 (18%), Positives = 45/149 (30%), Gaps = 33/149 (22%)

Query: 20  PLHLAAAKGYLDIVLKLV--------SVNPEMCFARDIDGKNPLHIAAI---RGNVNVLK 68
            L    ++G  D +  L+         +  +  F     GK  L  A +    G  + + 
Sbjct: 8   ILFDIVSRGSPDGLEGLLSFLLTHKKRLT-DEEFREPSTGKTCLPKALLNLSAGRNDTIP 66

Query: 69  ELVKVRPQAALILM----------ERGVTILHACVNYNQLESLRLL------VEIRNDHE 112
            L+ +  +   +             RG T LH  +       + LL      V  +    
Sbjct: 67  ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGR 126

Query: 113 FVNSKDDN-----GSTILHLAVLEKQVEV 136
           F   KD+      G   L LA    Q  +
Sbjct: 127 FFQPKDEGGYFYFGELPLSLAACTNQPHI 155

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 41.3 bits (97), Expect = 4e-05
 Identities = 16/109 (14%), Positives = 34/109 (31%), Gaps = 28/109 (25%)

Query: 51  GKNPLHIAAIRGNVNVLKELVKVRPQAALI------------LMERGVTILHACV---NY 95
            +  L     RG+ + L+ L+       L+                G T L   +   + 
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSF-----LLTHKKRLTDEEFREPSTGKTCLPKALLNLSA 59

Query: 96  NQLESLRLLVEIRNDHEF--------VNSKDDNGSTILHLAVLEKQVEV 136
            + +++ +L++I                     G T LH+A+  +    
Sbjct: 60  GRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHY 108

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 65.7 bits (160), Expect = 6e-14
 Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 13/129 (10%)

Query: 12  ELDSRKASPLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVL 67
             D    + LH A + G+ +IV  L+     VN      +D  G +PLHIAA  G   ++
Sbjct: 35  RTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-----DKDDAGWSPLHIAASAGXDEIV 89

Query: 68  KELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHL 127
           K L+         + + G T LH   + N+ E   +L+E   +    ++KD   +T +H 
Sbjct: 90  KALLVKGAHVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGAN---PDAKDHYDATAMHR 145

Query: 128 AVLEKQVEV 136
           A  +  +++
Sbjct: 146 AAAKGNLKM 154

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 61.4 bits (149), Expect = 3e-12
 Identities = 23/124 (18%), Positives = 50/124 (40%), Gaps = 17/124 (13%)

Query: 19  SPLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVR 74
              +LA +    ++  ++++             D D +  LH A   G+  +++ L++  
Sbjct: 9   MICNLAYSGKLDELKERILADKSLAT-----RTDQDSRTALHWACSAGHTEIVEFLLQ-- 61

Query: 75  PQAALI--LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEK 132
                +    + G + LH   +    E ++ L+        VN+ + NG T LH A  + 
Sbjct: 62  -LGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAH---VNAVNQNGCTPLHYAASKN 117

Query: 133 QVEV 136
           + E+
Sbjct: 118 RHEI 121

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 54.9 bits (132), Expect = 6e-10
 Identities = 29/134 (21%), Positives = 54/134 (40%), Gaps = 5/134 (3%)

Query: 1   EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
           + L  K      ++    +PLH AA+K   +I + L+        A+D      +H AA 
Sbjct: 90  KALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD-AKDHYDATAMHRAAA 148

Query: 61  RGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDN 120
           +GN+ ++  L+  +     I    G T LH   +  ++E  + LV        +  ++  
Sbjct: 149 KGNLKMVHILLFYKASTN-IQDTEGNTPLHLACDEERVEEAKFLVTQGAS---IYIENKE 204

Query: 121 GSTILHLAVLEKQV 134
             T L +A     +
Sbjct: 205 EKTPLQVAKGGLGL 218

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 44.9 bits (106), Expect = 2e-06
 Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 8/90 (8%)

Query: 49  IDGKNPLHIAAIRGNVNVLKELVKVRPQAALI--LMERGVTILHACVNYNQLESLRLLVE 106
           +      ++A       + + ++      +L     +   T LH   +    E +  L++
Sbjct: 5   VSNIMICNLAYSGKLDELKERILA---DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ 61

Query: 107 IRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
           +      VN KDD G + LH+A      E+
Sbjct: 62  LGVP---VNDKDDAGWSPLHIAASAGXDEI 88

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 65.0 bits (158), Expect = 3e-13
 Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 6/119 (5%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFA-RDIDGKNPLHIAAIRGNVNVLKELVK 72
            +       LAA  G+L ++ +L  + P    A    +  +   +AA  G+++VL  L +
Sbjct: 125 QAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCE 184

Query: 73  VRP--QAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV 129
           + P    A+I  E       A V       +  L++       +   + +        V
Sbjct: 185 LAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM---LAYAEIHEFEYGEKYV 240

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 56.5 bits (136), Expect = 3e-10
 Identities = 16/107 (14%), Positives = 36/107 (33%), Gaps = 2/107 (1%)

Query: 23  LAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILM 82
           +      LD +  L++ +  +      +      +AA  G+++VL  L ++ P   + ++
Sbjct: 101 ITGCSSALDTLCLLLTSDEIVK-VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMI 159

Query: 83  ER-GVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLA 128
           +               L  L  L E+         + +N       A
Sbjct: 160 QAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAA 206

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 46.9 bits (111), Expect = 5e-07
 Identities = 21/147 (14%), Positives = 48/147 (32%), Gaps = 29/147 (19%)

Query: 13  LDSRKASPLHLAAA-KGYLDIVLKLVSVNPEMCFA-----------------RDIDGKNP 54
           + +        AA  +G+ +++  L+     + +A                 R ++    
Sbjct: 194 IQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKE 253

Query: 55  LHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQ---LESLRLLVEIRNDH 111
           +H A    N + + +LV            +G  +L   +  N    L+ +R L+ I    
Sbjct: 254 MHDAFKLSNPDGVFDLVTKSECL------QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIK 307

Query: 112 E--FVNSKDDNGSTILHLAVLEKQVEV 136
                 +   + + +L LA+       
Sbjct: 308 ALAPTATIPGDANELLRLALRLGNQGA 334

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 40.7 bits (95), Expect = 7e-05
 Identities = 9/59 (15%), Positives = 18/59 (30%), Gaps = 4/59 (6%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK 72
                  L LA   G       L+S+         +   N  +I    G +++    ++
Sbjct: 316 PGDANELLRLALRLGNQGACALLLSIPS----VLALTKANNYYINETGGRLDLRAVALE 370

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 59.7 bits (145), Expect = 5e-12
 Identities = 15/136 (11%), Positives = 38/136 (27%), Gaps = 28/136 (20%)

Query: 19  SPLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVR 74
             L     +    I + L++    +      +R  +G          G  ++       +
Sbjct: 44  DVLRNNNDEARYKISMFLINKGADIK-----SRTKEGTTLFFPLFQGGGNDITGTTELCK 98

Query: 75  PQAALILMERGV----------TILHACVNYNQLES--LRLLVEIRNDHEF--VNSKDDN 120
                I +E+G            ++   +    ++   +  L ++        +  KD  
Sbjct: 99  -----IFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKW 153

Query: 121 GSTILHLAVLEKQVEV 136
           G T L      ++   
Sbjct: 154 GLTALEFVKRCQKPIA 169

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 56.6 bits (137), Expect = 7e-11
 Identities = 16/136 (11%), Positives = 36/136 (26%), Gaps = 28/136 (20%)

Query: 17  KASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQ 76
           +   +  AA  G  +  L+L     E      +   N L+      N     ++      
Sbjct: 6   EYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISM---- 59

Query: 77  AALILMERGV----------TILHACVNYNQ------LESLRLLVEIRNDHEFVNSKDDN 120
               L+ +G           T+                E  ++ +E   D   + +    
Sbjct: 60  ---FLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGAD---ITALYKP 113

Query: 121 GSTILHLAVLEKQVEV 136
              ++   +    V+ 
Sbjct: 114 YKIVVFKNIFNYFVDE 129

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 55.5 bits (134), Expect = 2e-10
 Identities = 14/127 (11%), Positives = 32/127 (25%), Gaps = 32/127 (25%)

Query: 14  DSRKASPLHLAAAKGYLDIVLK------LVS----VNPEMCFARDIDGKNPLHIAAIRGN 63
                +        G  DI          +     +      A     K  +        
Sbjct: 72  TKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT-----ALYKPYKIVVFKNIFNYF 126

Query: 64  VNVLKELVKVRPQAALILMERGV----------TILHACVNYNQLESLRLLVEIRNDHEF 113
                +  ++ P   LI  + G+          T L       +  +L+++ +       
Sbjct: 127 ----VDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKK--- 179

Query: 114 VNSKDDN 120
            N K+++
Sbjct: 180 YNLKENS 186

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 56.6 bits (138), Expect = 1e-11
 Identities = 39/119 (32%), Positives = 53/119 (44%), Gaps = 42/119 (35%)

Query: 20  PLHLAAAKGYLDIVLKLVSV--NPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQA 77
           PLHLAA  G+L++V  L+    +     A+D +G+ PLH+AA  G+     E+VK     
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARNGH----LEVVK----- 52

Query: 78  ALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
                                    LL+E   D   VN+KD NG T LHLA     +EV
Sbjct: 53  -------------------------LLLEAGAD---VNAKDKNGRTPLHLAARNGHLEV 83

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 50.4 bits (122), Expect = 2e-09
 Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 5/56 (8%)

Query: 20 PLHLAAAKGYLDIVLKLVSV--NPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
          PLHLAA  G+L++V  L+    +     A+D +G+ PLH+AA  G++ V+K L++ 
Sbjct: 38 PLHLAARNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 57.3 bits (138), Expect = 1e-10
 Identities = 20/140 (14%), Positives = 39/140 (27%), Gaps = 15/140 (10%)

Query: 12  ELDSRKASPLHLAAAKG---YLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVN--- 65
             D+   S L  A              L+          D   +  LH   I   +    
Sbjct: 159 YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCS 218

Query: 66  ---------VLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNS 116
                    ++  +VK + +          +  +      +   L  L         +N+
Sbjct: 219 AAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNA 278

Query: 117 KDDNGSTILHLAVLEKQVEV 136
           +D NG T L++A     + +
Sbjct: 279 QDSNGDTCLNIAARLGNISI 298

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 53.5 bits (128), Expect = 2e-09
 Identities = 22/127 (17%), Positives = 40/127 (31%), Gaps = 6/127 (4%)

Query: 12  ELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELV 71
           E  S      H++      ++     +    +    D  G  PLH      N+ ++K LV
Sbjct: 92  EGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLV 151

Query: 72  KVRPQAALILM--ERGVTILHACVNYNQLESLRLLVEIRNDH-EFVNSKDDNGSTILHLA 128
           K     +  L     G + L   V             + +     +  +D    TILH  
Sbjct: 152 K---HGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHI 208

Query: 129 VLEKQVE 135
           ++   + 
Sbjct: 209 IITSGMT 215

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 40.8 bits (95), Expect = 7e-05
 Identities = 16/132 (12%), Positives = 36/132 (27%), Gaps = 40/132 (30%)

Query: 1   EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCF---ARDIDGKNPLHI 57
             + +K  +  +  + +             D +L+ + +   +     A+D +G   L+I
Sbjct: 230 GWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNI 289

Query: 58  AAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSK 117
           AA  GN      +V         L++ G                                
Sbjct: 290 AARLGN----ISIVD-------ALLDYGADP--------------------------FIA 312

Query: 118 DDNGSTILHLAV 129
           + +G   +    
Sbjct: 313 NKSGLRPVDFGA 324

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 52.6 bits (127), Expect = 6e-10
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 14/91 (15%)

Query: 20  PLHLAAAKGYLDIVLKLVS----VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRP 75
            L  AA  G  D V  L++    V      A+D +G  PLH+AA  G++ V+K L++   
Sbjct: 27  KLLEAARAGQDDEVRILMANGADVA-----AKDKNGSTPLHLAARNGHLEVVKLLLE--- 78

Query: 76  QAALILM--ERGVTILHACVNYNQLESLRLL 104
             A +    + G T     ++    +   +L
Sbjct: 79  AGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 46.8 bits (112), Expect = 9e-08
 Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 12/115 (10%)

Query: 24  AAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALI--L 81
            ++  +      LV     M      D    L  AA  G  + ++ L+      A +   
Sbjct: 1   GSSHHHHHHSSGLVPRGSHM----GSDLGKKLLEAARAGQDDEVRILMA---NGADVAAK 53

Query: 82  MERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
            + G T LH       LE ++LL+E   D   V ++D  G T   +++     ++
Sbjct: 54  DKNGSTPLHLAARNGHLEVVKLLLEAGAD---VXAQDKFGKTAFDISIDNGNEDL 105

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 43.8 bits (103), Expect = 5e-06
 Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 50  DGKNPLHIAAIRGNVNVLK--ELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEI 107
             +  LH+A    +   L   + +            +G T LH C   +  E L+LL+  
Sbjct: 168 PDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRG 227

Query: 108 RNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
           +     +   +++G T L +A   K    
Sbjct: 228 KAS---IEIANESGETPLDIAKRLKHEHC 253

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 39.2 bits (91), Expect = 2e-04
 Identities = 22/108 (20%), Positives = 33/108 (30%), Gaps = 7/108 (6%)

Query: 14  DSRKASPLHLA--AAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELV 71
                + LHLA  +       ++  +  N      +   G   LH   +  N   LK L+
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL 225

Query: 72  KVRPQAALILMERGVTILHACVNYNQLESLRLLVEI----RNDHEFVN 115
           +    +  I  E G T L             LL +      N H  V 
Sbjct: 226 R-GKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVHVE 272

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 42.3 bits (99), Expect = 2e-05
 Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 19/95 (20%)

Query: 50  DGKNPLHIAAIRGNVNVLKELVKVRPQAALIL---------MERGVTILHACVNYNQLES 100
             +  LH+A    N   L       P    I+            G T LH    YNQ + 
Sbjct: 189 PEELVLHLAVKVANQASL-------PLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDC 241

Query: 101 LRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVE 135
           L+LL++ R     V + ++ G T L +A  +   E
Sbjct: 242 LKLLLKGRAL---VGTVNEAGETALDIARKKHHKE 273

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	159
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.98
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.98
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.98
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.98
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.98
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.98
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.98
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.97
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.97
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.97
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.97
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.97
2rfa_A	232	Transient receptor potential cation channel subfa	99.97
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.97
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.97
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.97
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.97
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.97
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.97
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.97
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.97
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.96
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.96
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.96
2pnn_A	273	Transient receptor potential cation channel subfa	99.96
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.96
2rfa_A	232	Transient receptor potential cation channel subfa	99.96
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.96
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.96
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.96
2etb_A	256	Transient receptor potential cation channel subfam	99.96
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.95
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.95
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.95
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
2pnn_A	273	Transient receptor potential cation channel subfa	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.95
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.95
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.94
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.94
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.94
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.94
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.94
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.93
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.92
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.92
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.91
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.91
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.91
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.91
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.91
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.91
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.9
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.9
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.9
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.9
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.9
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.9
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.89
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.89
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.88
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.88
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.87
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.87
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.87
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.86
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.86
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.85
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.83
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.82
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.81

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=3.4e-36  Score=188.37  Aligned_cols=140  Identities=31%  Similarity=0.365  Sum_probs=130.6

Q ss_pred             CccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhh
Q 035643            1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALI   80 (159)
Q Consensus         1 ~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~   80 (159)
                      |+|++.|+++|.+|.+|.||||+|+..++.++++.|++.+.++ +.++..|.||||+|+..|+.+++++|++.+ ...+.
T Consensus        21 ~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g-advn~   98 (169)
T 4gpm_A           21 KDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKG-ADVNA   98 (169)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTC
T ss_pred             HHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcCCHHHHHHHHHCc-CCCCC
Confidence            3588999999999999999999999999999999999999998 689999999999999999999999999954 55667


Q ss_pred             hccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCc
Q 035643           81 LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNN  145 (159)
Q Consensus        81 ~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~  145 (159)
                      ++..|.||||+|+..|+.+++++|++.|++   ++.+|..|+||||+|+..|+.+++++|+++|+
T Consensus        99 ~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad---~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA  160 (169)
T 4gpm_A           99 KDSDGRTPLHHAAENGHKEVVKLLISKGAD---VNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG  160 (169)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHTC--
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---ccccCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            788999999999999999999999999999   89999999999999999999999999999965

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.7e-35  Score=196.85  Aligned_cols=153  Identities=24%  Similarity=0.257  Sum_probs=139.7

Q ss_pred             CccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhh
Q 035643            1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALI   80 (159)
Q Consensus         1 ~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~   80 (159)
                      ++|++.|+++|.+|.+|.||||+|+..|+.+++++|++.++++ +.++..|.||+++|+..++.+++++|++.+ .....
T Consensus        70 ~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g-~~~n~  147 (269)
T 4b93_B           70 AKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSN-AKPNK  147 (269)
T ss_dssp             -----CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCSCC
T ss_pred             HHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHHCC-CCCCC
Confidence            3578999999999999999999999999999999999999988 588999999999999999999999999954 55566


Q ss_pred             hccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643           81 LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus        81 ~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      ++..|.||||+|+..|+.+++++|++.|++   ++.++..|.||||+|+..|+.+++++|+++ |.+++..+..|+||+
T Consensus       148 ~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad---vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-Gad~~~~d~~G~TpL  222 (269)
T 4b93_B          148 KDLSGNTPLIYACSGGHHELVALLLQHGAS---INASNNKGNTALHEAVIEKHVFVVELLLLH-GASVQVLNKRQRTAV  222 (269)
T ss_dssp             CCTTCCCHHHHHHHTTCGGGHHHHHHTTCC---TTCBCTTSCBHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCSG
T ss_pred             CCCCCCCHHHHHHHCCCHHHHHHHHHCCCC---CCccccCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHH
Confidence            788999999999999999999999999999   899999999999999999999999999998 678999999999985

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.98  E-value=6.1e-33  Score=186.01  Aligned_cols=154  Identities=21%  Similarity=0.151  Sum_probs=112.1

Q ss_pred             ccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCcc--------------------------------------
Q 035643            2 ILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEM--------------------------------------   43 (159)
Q Consensus         2 ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~--------------------------------------   43 (159)
                      +|+++|++++..+..|.||||+|+..|+.+++++|++.++..                                      
T Consensus        63 ~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (282)
T 1oy3_D           63 KLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEP  142 (282)
T ss_dssp             HHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC----------------------------------
T ss_pred             HHHHcCCCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhh
Confidence            466777888877777888888888888888888877765431                                      


Q ss_pred             --------ceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhcCChhHHHHHHhhcCCccccc
Q 035643           44 --------CFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVN  115 (159)
Q Consensus        44 --------~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~  115 (159)
                              .+.++..|.||||+|+..|+.+++++|++.+.......+..|.||||+|+..++.+++++|++.|++   ++
T Consensus       143 ~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad---~~  219 (282)
T 1oy3_D          143 RDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD---PT  219 (282)
T ss_dssp             -CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TT
T ss_pred             hhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCC---Cc
Confidence                    1345667778888888888888888888755444333334588888888888888888888888888   78


Q ss_pred             cccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643          116 SKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus       116 ~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      .+|..|.||||+|+..++.+++++|+++ +.+++..+..|.||+
T Consensus       220 ~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl  262 (282)
T 1oy3_D          220 ARMYGGRTPLGSALLRPNPILARLLRAH-GAPEPEDGGDKLSPC  262 (282)
T ss_dssp             CCCTTSCCHHHHHHTSSCHHHHHHHHHT-TCCCCCCC-------
T ss_pred             ccccCCCCHHHHHHHcCCcHHHHHHHHc-CCCcCcCCCcccccc
Confidence            8888888888888888888888888888 557778888888875

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.98  E-value=1.8e-32  Score=175.74  Aligned_cols=153  Identities=20%  Similarity=0.282  Sum_probs=140.0

Q ss_pred             ccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhh
Q 035643            2 ILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALIL   81 (159)
Q Consensus         2 ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~   81 (159)
                      +|.+.+.+++..|.+|.||||+|+..|+.+++++|++.++++ +.++..|.||+|+|+..++.+++++|++.........
T Consensus        24 ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~  102 (201)
T 3hra_A           24 ILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKH  102 (201)
T ss_dssp             HHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCC
T ss_pred             HHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccc
Confidence            345666699999999999999999999999999999999988 5889999999999999999999999997677777778


Q ss_pred             ccCCCCchhhhhhcCChhHHHHHHhhc-CCccccccccCCCCCHHHHHHHhCC-----cceeeeccCCCccCcccccCCC
Q 035643           82 MERGVTILHACVNYNQLESLRLLVEIR-NDHEFVNSKDDNGSTILHLAVLEKQ-----VEVFYMDFDRNNMDNNIFYGCG  155 (159)
Q Consensus        82 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~~~~~tpl~~a~~~~~-----~~~~~~ll~~~~~~~~~~~~~g  155 (159)
                      +..|.||||+|+..++.+++++|++.+ .+   ++.+|..|.||||+|+..+.     .+++++|+++ +.+++..+..|
T Consensus       103 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~-ga~~~~~~~~g  178 (201)
T 3hra_A          103 NRYGGNALIPAAEKGHIDNVKLLLEDGRED---IDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMEN-GADQSIKDNSG  178 (201)
T ss_dssp             CTTSCCSHHHHHHTTCHHHHHHHHHHCCCC---TTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHT-TCCTTCCCTTS
T ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHcCCCC---cCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHC-CCCCCccCCCC
Confidence            889999999999999999999999998 77   88999999999999999988     8999999999 67888899999


Q ss_pred             CCCC
Q 035643          156 LSGY  159 (159)
Q Consensus       156 ~~~~  159 (159)
                      +||+
T Consensus       179 ~t~l  182 (201)
T 3hra_A          179 RTAM  182 (201)
T ss_dssp             CCHH
T ss_pred             CCHH
Confidence            9874

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.98  E-value=7e-33  Score=183.62  Aligned_cols=151  Identities=21%  Similarity=0.191  Sum_probs=83.9

Q ss_pred             cccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhc
Q 035643            3 LRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILM   82 (159)
Q Consensus         3 l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~   82 (159)
                      |++.|++++..|..|.||||+|+..|+.+++++|++.+....+.++..|.||||+|+..++.+++++|++. +......+
T Consensus        76 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d  154 (253)
T 1yyh_A           76 LLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS-HADVNAVD  154 (253)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHT-TCCTTCBC
T ss_pred             HHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHc-CCCCCCcC
Confidence            44445555555555555555555555555555555544422234444555555555555555555555552 22333445


Q ss_pred             cCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCC
Q 035643           83 ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSG  158 (159)
Q Consensus        83 ~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~  158 (159)
                      ..|.||||+|+..++.+++++|++.|++   ++.+|..|.||||+|+..|+.+++++|+++ +.+++..+..|+||
T Consensus       155 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tp  226 (253)
T 1yyh_A          155 DLGKSALHWAAAVNNVDAAVVLLKNGAN---KDMQNNREETPLFLAAREGSYETAKVLLDH-FANRDITDHMDRLP  226 (253)
T ss_dssp             TTSCBHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCccccccCCCCH
Confidence            5566666666666666666666666666   566666666666666666666666666666 44555666666654

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.98  E-value=6e-32  Score=177.36  Aligned_cols=147  Identities=27%  Similarity=0.300  Sum_probs=128.2

Q ss_pred             CccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCch-----hhhhhc
Q 035643            8 EQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQ-----AALILM   82 (159)
Q Consensus         8 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~-----~~~~~~   82 (159)
                      ++++..+..|.||||+|+..|+.+++++|++.++++ +.++..|.||||+|+..++.+++++|++.+..     .....+
T Consensus        36 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~  114 (236)
T 1ikn_D           36 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATN  114 (236)
T ss_dssp             CCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCC
T ss_pred             HHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccC
Confidence            478999999999999999999999999999998887 57888999999999999999999999985532     245567


Q ss_pred             cCCCCchhhhhhcCChhHHHHHHhhcCCccccccccC-CCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643           83 ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDD-NGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus        83 ~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~-~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      ..|.||||+|+..++.+++++|++.|++   ++.++. .|.||||+|+..|+.+++++|+++ +.+++..+..|.||+
T Consensus       115 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl  188 (236)
T 1ikn_D          115 YNGHTCLHLASIHGYLGIVELLVSLGAD---VNAQEPCNGRTALHLAVDLQNPDLVSLLLKC-GADVNRVTYQGYSPY  188 (236)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHHTCC---TTCCCTTTCCCHHHHHHHTTCHHHHHHHHTT-TCCSCCCCTTCCCGG
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcccCCCCCHH
Confidence            7789999999999999999999999988   788887 899999999999999999999998 678888888888874

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.98  E-value=1.8e-32  Score=179.12  Aligned_cols=152  Identities=24%  Similarity=0.231  Sum_probs=133.5

Q ss_pred             ccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhh
Q 035643            2 ILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALIL   81 (159)
Q Consensus         2 ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~   81 (159)
                      +|++.|++++..|..|.||||+|+..|+.+++++|++.+.++ +.++..|.||||+|+..++.+++++|++.+ ......
T Consensus        58 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~  135 (231)
T 3aji_A           58 FLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGG-ANPDAK  135 (231)
T ss_dssp             HHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCC
T ss_pred             HHHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCc
Confidence            577888999999999999999999999999999999988887 578888999999999999999999999844 445566


Q ss_pred             ccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643           82 MERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus        82 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      +..|.||||+|+..++.+++++|++.+++   ++.+|..|.||||+|+..++.+++++|+++ +.+++..+..|.||+
T Consensus       136 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l  209 (231)
T 3aji_A          136 DHYDATAMHRAAAKGNLKMVHILLFYKAS---TNIQDTEGNTPLHLACDEERVEEAKFLVTQ-GASIYIENKEEKTPL  209 (231)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCC---SCCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCC---ccccCCCCCCHHHHHHHCCCHHHHHHHHHC-CCCCCCCCCCCCCHH
Confidence            77899999999999999999999999988   888999999999999999999999999998 668888888998874

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.98  E-value=7e-33  Score=189.84  Aligned_cols=156  Identities=20%  Similarity=0.206  Sum_probs=137.4

Q ss_pred             ccccCCCcccc-ccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCC---HHHHHHHHhcCchh
Q 035643            2 ILRRKPEQAGE-LDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGN---VNVLKELVKVRPQA   77 (159)
Q Consensus         2 ll~~~~~~~~~-~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~---~~~~~~l~~~~~~~   77 (159)
                      +|++.|++++. .|..|.||||+|+..|+.+++++|++.++++ +.++..|.||||+|+..|+   .++++.|++.....
T Consensus       115 ~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~  193 (327)
T 1sw6_A          115 AFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC  193 (327)
T ss_dssp             HCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGG
T ss_pred             HHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhcc
Confidence            57889999999 8999999999999999999999999999998 6899999999999999988   56777777755456


Q ss_pred             hhhhccCCCCchhhhhh----cCChhHHHHHHhhcC--------------------Ccc---------------------
Q 035643           78 ALILMERGVTILHACVN----YNQLESLRLLVEIRN--------------------DHE---------------------  112 (159)
Q Consensus        78 ~~~~~~~~~t~l~~a~~----~~~~~~~~~Ll~~~~--------------------~~~---------------------  112 (159)
                      ....+..|.||||+|+.    .++.+++++|++.+.                    +..                     
T Consensus       194 ~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~  273 (327)
T 1sw6_A          194 LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIA  273 (327)
T ss_dssp             GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHH
T ss_pred             ccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHH
Confidence            67788899999999999    899999999988643                    100                     


Q ss_pred             -ccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643          113 -FVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus       113 -~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                       .++.+|..|+||||+|+..|+.+++++|+++ +.+++..+..|+||+
T Consensus       274 ~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-Gad~~~~d~~G~TpL  320 (327)
T 1sw6_A          274 NMLNAQDSNGDTCLNIAARLGNISIVDALLDY-GADPFIANKSGLRPV  320 (327)
T ss_dssp             HTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHT-TCCTTCCCTTSCCGG
T ss_pred             hCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHH
Confidence             1677889999999999999999999999998 778999999999985

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.98  E-value=4.2e-32  Score=176.58  Aligned_cols=151  Identities=22%  Similarity=0.229  Sum_probs=76.7

Q ss_pred             ccccCCCccccc-cCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhh
Q 035643            2 ILRRKPEQAGEL-DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALI   80 (159)
Q Consensus         2 ll~~~~~~~~~~-~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~   80 (159)
                      +|++.|.+++.. |.+|.||||+|+..|+.+++++|++.+.++ +..+..|.||||+|+..++.+++++|++.+......
T Consensus         9 ~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~   87 (223)
T 2f8y_A            9 DFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA   87 (223)
T ss_dssp             TTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTC
T ss_pred             HHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc
Confidence            345555555543 455556666666555566665555555554 345555555555555555555555555544333333


Q ss_pred             hccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCC
Q 035643           81 LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLS  157 (159)
Q Consensus        81 ~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~  157 (159)
                      .+..|.||||+|+..++.+++++|++.+++   ++.+|..|.||||+|+..++.+++++|+++ +.+++..+..|.|
T Consensus        88 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t  160 (223)
T 2f8y_A           88 RMHDGTTPLILAARLAVEGMLEDLINSHAD---VNAVDDLGKSALHWAAAVNNVDAAVVLLKN-GANKDMQNNREET  160 (223)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---TTCBCTTSCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCC
T ss_pred             CCCCCCcHHHHHHHhCcHHHHHHHHHcCCC---CcCcCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCcC
Confidence            444444555555554444455554444444   444444444444444444444444444444 3344444444444

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.97  E-value=3.4e-32  Score=180.35  Aligned_cols=154  Identities=21%  Similarity=0.222  Sum_probs=132.7

Q ss_pred             CccccCCCcccc-ccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhh
Q 035643            1 EILRRKPEQAGE-LDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAAL   79 (159)
Q Consensus         1 ~ll~~~~~~~~~-~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~   79 (159)
                      ++|++.|++++. .|..|.||||+|+..|+.+++++|++.+.++ +.++..|.||||+|+..++.+++++|++.+.....
T Consensus        40 ~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~  118 (253)
T 1yyh_A           40 SDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD  118 (253)
T ss_dssp             ------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTT
T ss_pred             HHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc
Confidence            357788888865 4899999999999999999999999999988 68899999999999999999999999997765777


Q ss_pred             hhccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643           80 ILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus        80 ~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      ..+..|.||||+|+..++.+++++|++.|++   ++.+|..|.||||+|+..|+.+++++|+++ +.+++..+..|.||+
T Consensus       119 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpL  194 (253)
T 1yyh_A          119 ARMHDGTTPLILAARLAVEGMLEDLINSHAD---VNAVDDLGKSALHWAAAVNNVDAAVVLLKN-GANKDMQNNREETPL  194 (253)
T ss_dssp             CCCTTCCCHHHHHHHHTCSSHHHHHHHTTCC---TTCBCTTSCBHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHH
T ss_pred             ccCCCCCcHHHHHHHcChHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHH
Confidence            7788999999999999999999999999999   899999999999999999999999999999 678888899998874

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.97  E-value=3.7e-32  Score=176.85  Aligned_cols=154  Identities=20%  Similarity=0.181  Sum_probs=139.6

Q ss_pred             CccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhh
Q 035643            1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALI   80 (159)
Q Consensus         1 ~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~   80 (159)
                      ++|++.|++++..|..|.||||+|+..|+.+++++|++.++...+..+..|.||||+|+..++.+++++|++. +.....
T Consensus        42 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~  120 (223)
T 2f8y_A           42 KRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS-HADVNA  120 (223)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTC
T ss_pred             HHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHc-CCCCcC
Confidence            3578899999999999999999999999999999999998844478899999999999999999999999994 455556


Q ss_pred             hccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643           81 LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus        81 ~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      .+..|.||||+|+..++.+++++|++.|++   ++.+|..|.||||+|+..++.+++++|+++ +.+++..+..|.||+
T Consensus       121 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l  195 (223)
T 2f8y_A          121 VDDLGKSALHWAAAVNNVDAAVVLLKNGAN---KDMQNNREETPLFLAAREGSYETAKVLLDH-FANRDITDHMDRLPR  195 (223)
T ss_dssp             BCTTSCBHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCcCHHHHHHHcCCHHHHHHHHHc-CCCCccccccCCCHH
Confidence            778899999999999999999999999999   889999999999999999999999999999 568888888888863

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.97  E-value=4.3e-32  Score=183.48  Aligned_cols=153  Identities=25%  Similarity=0.272  Sum_probs=137.0

Q ss_pred             ccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhh--
Q 035643            2 ILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAAL--   79 (159)
Q Consensus         2 ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~--   79 (159)
                      +|++.|++++..|..|.||||+|+..|+.+++++|++.++++ +..+..|.||||+|+..|+.+++++|++.+.....  
T Consensus        58 ~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~  136 (299)
T 1s70_B           58 RLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVN  136 (299)
T ss_dssp             HHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcC
Confidence            577889999999999999999999999999999999999988 57899999999999999999999999985432210  


Q ss_pred             ---------------------------------------------------------hhccCCCCchhhhhhcCChhHHH
Q 035643           80 ---------------------------------------------------------ILMERGVTILHACVNYNQLESLR  102 (159)
Q Consensus        80 ---------------------------------------------------------~~~~~~~t~l~~a~~~~~~~~~~  102 (159)
                                                                               ..+..|.||||+|+..|+.++++
T Consensus       137 ~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~  216 (299)
T 1s70_B          137 SEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK  216 (299)
T ss_dssp             TTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHH
T ss_pred             CCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHH
Confidence                                                                     01245889999999999999999


Q ss_pred             HHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643          103 LLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus       103 ~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      +|++.|++   ++.+|..|.||||+|+..|+.+++++|+++ +.+++..+..|.||+
T Consensus       217 ~Ll~~g~d---~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~t~l  269 (299)
T 1s70_B          217 LLIQARYD---VNIKDYDGWTPLHAAAHWGKEEACRILVEN-LCDMEAVNKVGQTAF  269 (299)
T ss_dssp             HHHTTTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCTT
T ss_pred             HHHHcCCC---CCCcCCCCCcHHHHHHhcCCHHHHHHHHHc-CCCCCCcCCCCCCHH
Confidence            99999999   899999999999999999999999999999 678899999999986

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=6.9e-32  Score=168.94  Aligned_cols=139  Identities=27%  Similarity=0.349  Sum_probs=123.1

Q ss_pred             CccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhh
Q 035643            1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALI   80 (159)
Q Consensus         1 ~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~   80 (159)
                      ++|++.|++++..|..|.||||+|+..|+.+++++|++.+.++ +..+..|.||||+|+..++.+++++|++.+ .....
T Consensus        31 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~  108 (169)
T 2y1l_E           31 RILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAALFGHLEIVEVLLKNG-ADVNA  108 (169)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTC
T ss_pred             HHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCC
Confidence            3577889999999999999999999999999999999998887 578889999999999999999999999944 45556


Q ss_pred             hccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCC
Q 035643           81 LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRN  144 (159)
Q Consensus        81 ~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~  144 (159)
                      .+..|.||||+|+..++.+++++|++.|++   ++.+|..|.||+++|+..++.+++++|++.|
T Consensus       109 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          109 NDMEGHTPLHLAAMFGHLEIVEVLLKNGAD---VNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            677899999999999999999999999988   8889999999999999999999999998764

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=5.9e-32  Score=169.14  Aligned_cols=135  Identities=31%  Similarity=0.341  Sum_probs=125.9

Q ss_pred             CHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhcCCh
Q 035643           19 SPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQL   98 (159)
Q Consensus        19 t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~   98 (159)
                      ++|+.|+..|+.++|+.|++.++++ +.+|..|.||+|+|+..++.+++++|++.+ .....++..|.||||+|+..|+.
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv-n~~d~~g~t~l~~a~~~~~~~~~~~ll~~g-ad~~~~d~~g~TpLh~A~~~g~~   83 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKG-ADVNAKDSDGRTPLHHAAENGHK   83 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcc-cchhhhccCCCCHHHHHHHcCCH
Confidence            3699999999999999999999998 689999999999999999999999999954 55667788999999999999999


Q ss_pred             hHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643           99 ESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus        99 ~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      +++++|++.|++   ++.+|..|+||||+|+..|+.+++++|+++ +.+++..+..|+||+
T Consensus        84 ~~v~~Ll~~gad---vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~G~TpL  140 (169)
T 4gpm_A           84 EVVKLLISKGAD---VNAKDSDGRTPLHHAAENGHKEVVKLLISK-GADVNTSDSDGRTPL  140 (169)
T ss_dssp             HHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHH
T ss_pred             HHHHHHHHCcCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHH
Confidence            999999999999   899999999999999999999999999998 678899999999974

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=3.4e-32  Score=170.71  Aligned_cols=150  Identities=20%  Similarity=0.139  Sum_probs=128.7

Q ss_pred             cccCCCc-cccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhh
Q 035643            3 LRRKPEQ-AGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALIL   81 (159)
Q Consensus         3 l~~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~   81 (159)
                      |++.+.. ++..|..|.||||+|+..|+.+++++|++.+.++ +..+..|.||||+|+..++.+++++|++. +......
T Consensus        21 ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~   98 (172)
T 3v30_A           21 HLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTGGYTDIVGLLLER-DVDINIY   98 (172)
T ss_dssp             HHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCC
T ss_pred             HHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCC
Confidence            4455555 8999999999999999999999999999999988 68899999999999999999999999995 4555667


Q ss_pred             ccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCC
Q 035643           82 MERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSG  158 (159)
Q Consensus        82 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~  158 (159)
                      +..|.||||+|+..++.+++++|++.|++   ++.+|..|.||+|+|+..++.+++++|+++ +.+....+..|.||
T Consensus        99 ~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~-~~~~~~~~~~~~~p  171 (172)
T 3v30_A           99 DWNGGTPLLYAVRGNHVKCVEALLARGAD---LTTEADSGYTPMDLAVALGYRKVQQVIENH-ILKLFQSNLVPADP  171 (172)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHHH-HHHHSCC-------
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCC---ccccCCCCCCHHHHHHHhCcHHHHHHHHHH-HHHHhcccCCCCCC
Confidence            88899999999999999999999999999   899999999999999999999999999998 44555566666665

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.97  E-value=1.4e-31  Score=175.81  Aligned_cols=153  Identities=20%  Similarity=0.207  Sum_probs=111.2

Q ss_pred             ccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCC----ccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchh
Q 035643            2 ILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNP----EMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQA   77 (159)
Q Consensus         2 ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~----~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~   77 (159)
                      +|++.|++++..+..|.||||+|+..++.+++++|++.+.    +. +..+..|.||||+|+..++.+++++|++.+...
T Consensus        64 ~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~  142 (241)
T 1k1a_A           64 LLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDL-EARNYDGLTALHVAVNTECQETVQLLLERGADI  142 (241)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             HHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccc-cccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCc
Confidence            4556666666666666666666666666666666666554    33 355666667777777777777777777644333


Q ss_pred             hhhhccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCC
Q 035643           78 ALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLS  157 (159)
Q Consensus        78 ~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~  157 (159)
                      ....+..|.||||+|+..++.+++++|++.|++   ++.+|..|.||||+|+..|+.+++++|+++ +.+++..+..|.|
T Consensus       143 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t  218 (241)
T 1k1a_A          143 DAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN---VNAQMYSGSSALHSASGRGLLPLVRTLVRS-GADSSLKNCHNDT  218 (241)
T ss_dssp             TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCBCTTSCBHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCC
T ss_pred             ccccccCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHhc-CCCCCCcCCCCCC
Confidence            322226688888888888888888888888888   788888889999999988899999888887 5677888888888


Q ss_pred             CC
Q 035643          158 GY  159 (159)
Q Consensus       158 ~~  159 (159)
                      |+
T Consensus       219 pl  220 (241)
T 1k1a_A          219 PL  220 (241)
T ss_dssp             TT
T ss_pred             HH
Confidence            75

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.97  E-value=1.2e-31  Score=175.78  Aligned_cols=151  Identities=21%  Similarity=0.218  Sum_probs=83.6

Q ss_pred             cccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhc
Q 035643            3 LRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILM   82 (159)
Q Consensus         3 l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~   82 (159)
                      |++.|++++..+..|.||||+|+..|+.+++++|++.++...+..+..|.||+|+|+..++.+++++|++.+ ......+
T Consensus        63 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~  141 (237)
T 3b7b_A           63 LIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKG-SDINIRD  141 (237)
T ss_dssp             HHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCC
T ss_pred             HHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCccC
Confidence            444455555555555555555555555555555555442222344445555555555555555555555522 2233344


Q ss_pred             cCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCC
Q 035643           83 ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSG  158 (159)
Q Consensus        83 ~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~  158 (159)
                      ..|.||||+|+..++.+++++|++.+++   ++.+|..|.||||+|+..++.+++++|+++ +.+++..+..|+||
T Consensus       142 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~t~  213 (237)
T 3b7b_A          142 NEENICLHWAAFSGCVDIAEILLAAKCD---LHAVNIHGDSPLHIAARENRYDCVVLFLSR-DSDVTLKNKEGETP  213 (237)
T ss_dssp             TTSCCHHHHHHHHCCHHHHHHHHTTTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTSCCH
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHhCCHhHHHHHHHc-CCCCCccCCCCCCH
Confidence            5566666666666666666666666666   566666666666666666666666666666 44566666666665

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.97  E-value=1.4e-31  Score=175.53  Aligned_cols=154  Identities=21%  Similarity=0.261  Sum_probs=143.0

Q ss_pred             CccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhh
Q 035643            1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALI   80 (159)
Q Consensus         1 ~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~   80 (159)
                      ++|++.|++++..+..|.||||+|+..|+.+++++|++.+.++ +.++..|.||+|+|+..++.+++++|++.+......
T Consensus        28 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~  106 (237)
T 3b7b_A           28 HMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNC  106 (237)
T ss_dssp             HHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTC
T ss_pred             HHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCccc
Confidence            3578899999999999999999999999999999999999987 678999999999999999999999999976567777


Q ss_pred             hccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643           81 LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus        81 ~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      .+..|.||||+|+..++.+++++|++.|++   ++.++..|.||||+|+..|+.+++++|++. +.+++..+..|.||+
T Consensus       107 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L  181 (237)
T 3b7b_A          107 QDDGGWTPMIWATEYKHVDLVKLLLSKGSD---INIRDNEENICLHWAAFSGCVDIAEILLAA-KCDLHAVNIHGDSPL  181 (237)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHCCHHHHHHHHTT-TCCTTCCCTTCCCHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCccCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCcCCCCCCHH
Confidence            788899999999999999999999999999   889999999999999999999999999999 568888888898874

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.97  E-value=1e-31  Score=175.73  Aligned_cols=153  Identities=24%  Similarity=0.324  Sum_probs=133.2

Q ss_pred             cccC-CCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccc----eecCCCCCcHHHHHHHhCCHHHHHHHHhcCchh
Q 035643            3 LRRK-PEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMC----FARDIDGKNPLHIAAIRGNVNVLKELVKVRPQA   77 (159)
Q Consensus         3 l~~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~----~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~   77 (159)
                      |++. |++++.+|..|.||||+|+..|+.+++++|++.+++..    +..+..|.||||+|+..++.+++++|++.+...
T Consensus        22 Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  101 (232)
T 2rfa_A           22 LLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASV  101 (232)
T ss_dssp             HHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCC
Confidence            4555 99999999999999999999999999999999988753    345678999999999999999999999965443


Q ss_pred             hhhhc-------------cCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCccee----eec
Q 035643           78 ALILM-------------ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVF----YMD  140 (159)
Q Consensus        78 ~~~~~-------------~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~----~~l  140 (159)
                      . ..+             ..|.||||+|+..++.+++++|++.|++   ++.+|..|.||||+|+..++.+++    ++|
T Consensus       102 ~-~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~L  177 (232)
T 2rfa_A          102 S-ARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD---IRAQDSLGNTVLHILILQPNKTFACQMYNLL  177 (232)
T ss_dssp             T-CCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHTCSCHHHHHHHHHHH
T ss_pred             C-cccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHcCChHHHHHHHHHH
Confidence            3 333             2699999999999999999999999999   899999999999999999999988    999


Q ss_pred             cCCCccCc-----ccccCCCCCCC
Q 035643          141 FDRNNMDN-----NIFYGCGLSGY  159 (159)
Q Consensus       141 l~~~~~~~-----~~~~~~g~~~~  159 (159)
                      ++.+....     +..+..|+||+
T Consensus       178 l~~g~~~~~~~~~~~~~~~g~tpl  201 (232)
T 2rfa_A          178 LSYDGGDHLKSLELVPNNQGLTPF  201 (232)
T ss_dssp             HHTTCSCSSCCGGGCCCTTSCCHH
T ss_pred             HhcCCchhhhhhhccCCCCCCCHH
Confidence            99966443     57888898874

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.97  E-value=1.2e-31  Score=174.94  Aligned_cols=152  Identities=21%  Similarity=0.232  Sum_probs=91.5

Q ss_pred             cccCC--Ccccc-ccCCCCCHHHHHHHhCChHHHHHHhhcC--CccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchh
Q 035643            3 LRRKP--EQAGE-LDSRKASPLHLAAAKGYLDIVLKLVSVN--PEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQA   77 (159)
Q Consensus         3 l~~~~--~~~~~-~~~~g~t~l~~a~~~~~~~~~~~ll~~~--~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~   77 (159)
                      |++.|  .+++. .+..|.||||+|+..|+.+++++|++.+  .+. +..+..|.||||+|+..++.+++++|++. +..
T Consensus        55 Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~  132 (228)
T 2dzn_A           55 LLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIEN-GAS  132 (228)
T ss_dssp             HHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCC
T ss_pred             HHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHHc-CCC
Confidence            44555  44444 5556666666666666666666666655  444 34555666666666666666666666663 333


Q ss_pred             hhhhccCCCCchhhhhhcCChhHHHHHHhhc-CCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCC
Q 035643           78 ALILMERGVTILHACVNYNQLESLRLLVEIR-NDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGL  156 (159)
Q Consensus        78 ~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~  156 (159)
                      ....+..|.||||+|+..++.+++++|++.+ ++   ++.+|..|.||||+|+..|+.+++++|++..+.+++..+..|+
T Consensus       133 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~  209 (228)
T 2dzn_A          133 VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSA---VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGA  209 (228)
T ss_dssp             SCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCC---SCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSC
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHhcCccc---ccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCC
Confidence            3444555666666666666666666666666 55   5666666666666666666666666666333556666666666


Q ss_pred             CCC
Q 035643          157 SGY  159 (159)
Q Consensus       157 ~~~  159 (159)
                      ||+
T Consensus       210 t~l  212 (228)
T 2dzn_A          210 KAE  212 (228)
T ss_dssp             BGG
T ss_pred             cHH
Confidence            653

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=7.1e-32  Score=172.03  Aligned_cols=145  Identities=21%  Similarity=0.171  Sum_probs=129.7

Q ss_pred             ccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCc
Q 035643            9 QAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTI   88 (159)
Q Consensus         9 ~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~   88 (159)
                      .++.+|..|.||||+|+..|+.+++++|++.+.++ +..+..|.||||+|+..++.+++++|++.+ ......+..|.||
T Consensus        27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~  104 (192)
T 2rfm_A           27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSKG-SNVNTKDFSGKTP  104 (192)
T ss_dssp             HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTSCCH
T ss_pred             HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCcH
Confidence            46778999999999999999999999999998877 578889999999999999999999999955 4455667789999


Q ss_pred             hhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643           89 LHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus        89 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      ||+|+..++.+++++|++.+++   ++.+|..|.||||+|+..|+.+++++|+++ +.+++..+..|.||+
T Consensus       105 L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l  171 (192)
T 2rfm_A          105 LMWSIIFGYSEMSYFLLEHGAN---VNDRNLEGETPLIVASKYGRSEIVKKLLEL-GADISARDLTGLTAE  171 (192)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCC---SSCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCBCTTSCBHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHH
Confidence            9999999999999999999999   888999999999999999999999999998 678888888888874

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=1.2e-31  Score=166.64  Aligned_cols=139  Identities=20%  Similarity=0.213  Sum_probs=126.8

Q ss_pred             ccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhh
Q 035643            2 ILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALIL   81 (159)
Q Consensus         2 ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~   81 (159)
                      +|++.|++++..+..|.||||+|+. |+.+++++|++.+.++ +.++..|.||||+|+..++.+++++|++.+ ......
T Consensus        23 ~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~   99 (162)
T 1ihb_A           23 SLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGFLDTLQTLLEFQ-ADVNIE   99 (162)
T ss_dssp             HHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCC
T ss_pred             HHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCc
Confidence            5778999999999999999999999 9999999999999888 588999999999999999999999999954 555667


Q ss_pred             ccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCc
Q 035643           82 MERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNN  145 (159)
Q Consensus        82 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~  145 (159)
                      +..|.||||+|+..++.+++++|++.+++.  ++.++..|.||+|+|+..|+.+++++|+++|+
T Consensus       100 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GA  161 (162)
T 1ihb_A          100 DNEGNLPLHLAAKEGHLRVVEFLVKHTASN--VGHRNHKGDTACDLARLYGRNEVVSLMQANGA  161 (162)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHSCCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC-
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHccCCC--CCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Confidence            888999999999999999999999999874  47889999999999999999999999999864

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.97  E-value=5e-32  Score=181.59  Aligned_cols=153  Identities=25%  Similarity=0.234  Sum_probs=135.2

Q ss_pred             ccccCCCc---cccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCch--
Q 035643            2 ILRRKPEQ---AGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQ--   76 (159)
Q Consensus         2 ll~~~~~~---~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~--   76 (159)
                      +|++.|++   ++.++..|.||||+|+..|+.+++++|++.++++ +.++..|.||||+|+..++.+++++|++.+..  
T Consensus        27 ~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~  105 (282)
T 1oy3_D           27 FLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTALHLACRVRAHTCACVLLQPRPSHP  105 (282)
T ss_dssp             HHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSC
T ss_pred             HHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCc
Confidence            46666776   8899999999999999999999999999999988 58899999999999999999999999984432  


Q ss_pred             --------------------------------------------hhhhhccCCCCchhhhhhcCChhHHHHHHhhcCCcc
Q 035643           77 --------------------------------------------AALILMERGVTILHACVNYNQLESLRLLVEIRNDHE  112 (159)
Q Consensus        77 --------------------------------------------~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~  112 (159)
                                                                  .....+..|.||||+|+..++.+++++|++.|++  
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--  183 (282)
T 1oy3_D          106 RDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD--  183 (282)
T ss_dssp             CCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC--
T ss_pred             hhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC--
Confidence                                                        1334567899999999999999999999999999  


Q ss_pred             ccccccCC-CCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643          113 FVNSKDDN-GSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus       113 ~~~~~~~~-~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                       ++.++.. |.||||+|+..|+.+++++|+++ +.+++..+..|+||+
T Consensus       184 -~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~tpL  229 (282)
T 1oy3_D          184 -LNKPEPTCGRTPLHLAVEAQAASVLELLLKA-GADPTARMYGGRTPL  229 (282)
T ss_dssp             -TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHH
T ss_pred             -CCCCCCCCCcCHHHHHHHcCCHHHHHHHHHc-CCCCcccccCCCCHH
Confidence             7888754 99999999999999999999999 678999999999874

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.97  E-value=4.2e-31  Score=173.33  Aligned_cols=155  Identities=23%  Similarity=0.198  Sum_probs=136.3

Q ss_pred             CccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCcc-----ceecCCCCCcHHHHHHHhCCHHHHHHHHhcCc
Q 035643            1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEM-----CFARDIDGKNPLHIAAIRGNVNVLKELVKVRP   75 (159)
Q Consensus         1 ~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~-----~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~   75 (159)
                      ++|++.|++++..|..|.||||+|+..|+.+++++|++.+.+.     .+..+..|.||||+|+..++.+++++|++.+.
T Consensus        62 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  141 (236)
T 1ikn_D           62 EALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGA  141 (236)
T ss_dssp             HCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             HHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            4688999999999999999999999999999999999987642     35678889999999999999999999999664


Q ss_pred             hhhhhhcc-CCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCc-ccccC
Q 035643           76 QAALILME-RGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDN-NIFYG  153 (159)
Q Consensus        76 ~~~~~~~~-~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~-~~~~~  153 (159)
                      .. ...+. .|.||||+|+..++.+++++|++.|++   ++.+|..|.||+|+|+..++.+++++|+++|.... ...+.
T Consensus       142 ~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~  217 (236)
T 1ikn_D          142 DV-NAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD---VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPES  217 (236)
T ss_dssp             CT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC---SCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCC
T ss_pred             CC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCcc
Confidence            44 44554 899999999999999999999999999   89999999999999999999999999999976333 36666


Q ss_pred             CCCCCC
Q 035643          154 CGLSGY  159 (159)
Q Consensus       154 ~g~~~~  159 (159)
                      .|.+++
T Consensus       218 ~~~~~~  223 (236)
T 1ikn_D          218 EDEESY  223 (236)
T ss_dssp             CTTTCC
T ss_pred             chHHHH
Confidence            777664

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.97  E-value=6.6e-32  Score=163.48  Aligned_cols=133  Identities=17%  Similarity=0.152  Sum_probs=123.1

Q ss_pred             CCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccC-C
Q 035643            7 PEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMER-G   85 (159)
Q Consensus         7 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~-~   85 (159)
                      +++++..+..|.||||+|+..|+.+++++|++.+.++ +.++..|.||||+|+. ++.+++++|++.+ ......+.. |
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g-~~~~~~~~~~g   78 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLHG-AEPNCADPATL   78 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHHT-CCSSCCBTTTT
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHCC-CCCCCcCCCCC
Confidence            6789999999999999999999999999999999887 6889999999999999 9999999999955 445566777 9


Q ss_pred             CCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCc
Q 035643           86 VTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNN  145 (159)
Q Consensus        86 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~  145 (159)
                      .||||+|+..++.+++++|++.+++   ++.+|..|.||||+|+..++.+++++|+++|.
T Consensus        79 ~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga  135 (136)
T 1d9s_A           79 TRPVHDAAREGFLDTLVVLHRAGAR---LDVCDAWGRLPVDLAEEQGHRDIARYLHAATG  135 (136)
T ss_dssp             BCHHHHHHHHTCHHHHHHHHHTCCC---CCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCC---CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            9999999999999999999999999   89999999999999999999999999998743

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.97  E-value=5.8e-31  Score=171.64  Aligned_cols=154  Identities=23%  Similarity=0.188  Sum_probs=136.3

Q ss_pred             cccCCCccc-cccCCCCCHHHHHHHhCChHHHHHHhhcC--CccceecCCCCCcHHHHHHHhCCHHHHHHHHhcC-chhh
Q 035643            3 LRRKPEQAG-ELDSRKASPLHLAAAKGYLDIVLKLVSVN--PEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVR-PQAA   78 (159)
Q Consensus         3 l~~~~~~~~-~~~~~g~t~l~~a~~~~~~~~~~~ll~~~--~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~-~~~~   78 (159)
                      |++.+.++. ..|..|.||||+|+..|+.+++++|++.+  .+.....+..|.||||+|+..++.+++++|++.+ ....
T Consensus        21 Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~  100 (228)
T 2dzn_A           21 LLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL  100 (228)
T ss_dssp             HHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCT
T ss_pred             HHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccc
Confidence            445555544 48999999999999999999999999998  5553337889999999999999999999999954 2455


Q ss_pred             hhhccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCC
Q 035643           79 LILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSG  158 (159)
Q Consensus        79 ~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~  158 (159)
                      ...+..|.||||+|+..++.+++++|++.|++   ++.+|..|.||||+|+..|+.+++++|++.+..+++..+..|+||
T Consensus       101 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~  177 (228)
T 2dzn_A          101 NKITNQGVTCLHLAVGKKWFEVSQFLIENGAS---VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTP  177 (228)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---SCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCH
T ss_pred             ccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCC---ccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCH
Confidence            66778899999999999999999999999999   899999999999999999999999999999778999999999987


Q ss_pred             C
Q 035643          159 Y  159 (159)
Q Consensus       159 ~  159 (159)
                      +
T Consensus       178 L  178 (228)
T 2dzn_A          178 L  178 (228)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.97  E-value=1.3e-30  Score=175.47  Aligned_cols=151  Identities=21%  Similarity=0.161  Sum_probs=91.1

Q ss_pred             cccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcC--------
Q 035643            3 LRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVR--------   74 (159)
Q Consensus         3 l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~--------   74 (159)
                      |++.|++++.+|.+|.||||+|+..|+.+++++|++.+.++ +.++..|.||||+|+..++.+++++|++.+        
T Consensus        78 Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  156 (285)
T 3d9h_A           78 LISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESD  156 (285)
T ss_dssp             HHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCT
T ss_pred             HHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCC
Confidence            44455555555555555555555555555555555555444 344445555555555555555555444422        


Q ss_pred             -----------------------chhhhhhccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHh
Q 035643           75 -----------------------PQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLE  131 (159)
Q Consensus        75 -----------------------~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~  131 (159)
                                             +......+..|.||||+|+..++.+++++|++.|++   ++ .+..|.||||+|+..
T Consensus       157 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~-~~~~g~t~L~~A~~~  232 (285)
T 3d9h_A          157 LASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGAD---VN-QGKGQDSPLHAVVRT  232 (285)
T ss_dssp             TSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCC---TT-CCBTTBCHHHHHHHT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCC---CC-CCCCCCCHHHHHHHc
Confidence                                   222334455667777777777777777777777766   45 366777777777777


Q ss_pred             CCcceeeeccCCCccCcccccCCCCCCC
Q 035643          132 KQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus       132 ~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      ++.+++++|+++ +.+++..+..|+||+
T Consensus       233 ~~~~~v~~Ll~~-gad~~~~d~~g~t~l  259 (285)
T 3d9h_A          233 ASEELACLLMDF-GADTQAKNAEGKRPV  259 (285)
T ss_dssp             TCHHHHHHHHHT-TCCTTCCCTTSCCGG
T ss_pred             CCHHHHHHHHHC-CCCCCCcCCCCCCHH
Confidence            777777777776 556777777777764

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=9.6e-31  Score=167.68  Aligned_cols=141  Identities=22%  Similarity=0.211  Sum_probs=129.2

Q ss_pred             CccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhh
Q 035643            1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALI   80 (159)
Q Consensus         1 ~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~   80 (159)
                      ++|++.|++++..+..|.||||+|+..|+.+++++|++.+....+..+..|.||||+|+..++.+++++|++.+......
T Consensus        56 ~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~  135 (201)
T 3hra_A           56 KALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDF  135 (201)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTC
T ss_pred             HHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCC
Confidence            36789999999999999999999999999999999995544333688999999999999999999999999977677777


Q ss_pred             hccCCCCchhhhhhcCC-----hhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCC
Q 035643           81 LMERGVTILHACVNYNQ-----LESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRN  144 (159)
Q Consensus        81 ~~~~~~t~l~~a~~~~~-----~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~  144 (159)
                      .+..|.||||+|+..+.     .+++++|++.|++   ++.+|..|.||+|+|+..|+.+++++|+++|
T Consensus       136 ~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          136 QNDFGYTALIEAVGLREGNQLYQDIVKLLMENGAD---QSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             CCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             CCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCC---CCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            88899999999999988     8999999999999   8999999999999999999999999999874

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.97  E-value=9e-31  Score=180.11  Aligned_cols=152  Identities=22%  Similarity=0.212  Sum_probs=115.8

Q ss_pred             ccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchh----
Q 035643            2 ILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQA----   77 (159)
Q Consensus         2 ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~----   77 (159)
                      +|++.|++++..|..|.||||+|+..|+.+++++|++.+.++ +..+..|.||||+|+..++.+++++|++.+...    
T Consensus        76 ~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~  154 (351)
T 3utm_A           76 LLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVN  154 (351)
T ss_dssp             HHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccc
Confidence            567778888888888888888888888888888888887776 467777888888888888888888887743211    


Q ss_pred             --------------------------------------------------------------------------------
Q 035643           78 --------------------------------------------------------------------------------   77 (159)
Q Consensus        78 --------------------------------------------------------------------------------   77 (159)
                                                                                                      
T Consensus       155 ~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll  234 (351)
T 3utm_A          155 CHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLL  234 (351)
T ss_dssp             TTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHH
T ss_pred             CCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHH
Confidence                                                                                            


Q ss_pred             -----hhhhccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCccccc
Q 035643           78 -----ALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFY  152 (159)
Q Consensus        78 -----~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~  152 (159)
                           ...++..|.||||+|+..++.+++++|++.|++   ++.+|..|.||||+|+..|+.+++++|+++ +.+++..+
T Consensus       235 ~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-gad~~~~~  310 (351)
T 3utm_A          235 RKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK---MNALDSLGQTALHRAALAGHLQTCRLLLSY-GSDPSIIS  310 (351)
T ss_dssp             HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCC
T ss_pred             HcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCCcC
Confidence                 112345677888888888888888888888777   777788888888888888888888888887 55777777


Q ss_pred             CCCCCC
Q 035643          153 GCGLSG  158 (159)
Q Consensus       153 ~~g~~~  158 (159)
                      ..|+||
T Consensus       311 ~~g~ta  316 (351)
T 3utm_A          311 LQGFTA  316 (351)
T ss_dssp             TTSCCH
T ss_pred             CCCCCh
Confidence            777775

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=2.4e-31  Score=169.54  Aligned_cols=138  Identities=22%  Similarity=0.207  Sum_probs=128.1

Q ss_pred             ccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhh
Q 035643            2 ILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALIL   81 (159)
Q Consensus         2 ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~   81 (159)
                      +|++.|++++..+..|.||||+|+..|+.+++++|++.+.++ +.++..|.||||+|+..++.+++++|++. +......
T Consensus        53 ~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~  130 (192)
T 2rfm_A           53 KLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPLMWSIIFGYSEMSYFLLEH-GANVNDR  130 (192)
T ss_dssp             HHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSSCC
T ss_pred             HHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCC
Confidence            567789999999999999999999999999999999999987 68899999999999999999999999995 4555667


Q ss_pred             ccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCC
Q 035643           82 MERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRN  144 (159)
Q Consensus        82 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~  144 (159)
                      +..|.||||+|+..++.+++++|++.|++   ++.+|..|.||+|+|+..|+.+++++|++.+
T Consensus       131 ~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          131 NLEGETPLIVASKYGRSEIVKKLLELGAD---ISARDLTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHTTCC---TTCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence            88899999999999999999999999999   8999999999999999999999999998764

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=6.5e-31  Score=164.10  Aligned_cols=138  Identities=20%  Similarity=0.169  Sum_probs=108.5

Q ss_pred             ccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhh
Q 035643            2 ILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALIL   81 (159)
Q Consensus         2 ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~   81 (159)
                      .|++.|.+++..|..|.||||+|+..|+.+++++|++.+.++ +..+..|.||||+|+..++.+++++|++.+ ......
T Consensus        21 ~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~   98 (167)
T 3v31_A           21 TRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACSKGYTDIVKMLLDCG-VDVNEY   98 (167)
T ss_dssp             HHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHHT-CCTTCC
T ss_pred             HHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCcC
Confidence            356667788888888888888888888888888888887776 567777888888888888888888888744 344455


Q ss_pred             ccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCC
Q 035643           82 MERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRN  144 (159)
Q Consensus        82 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~  144 (159)
                      +..|.||||+|+..++.+++++|++.|++   ++.+|..|.||+|+|+..|+.+++++|++++
T Consensus        99 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~  158 (167)
T 3v31_A           99 DWNGGTPLLYAVHGNHVKCVKMLLESGAD---PTIETDSGYNSMDLAVALGYRSVQQVIESHL  158 (167)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCcHHHHHHHHHHH
Confidence            67788888888888888888888888877   7777888888888888888888888877663

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=2.1e-30  Score=159.75  Aligned_cols=133  Identities=25%  Similarity=0.253  Sum_probs=101.1

Q ss_pred             ccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhh
Q 035643            2 ILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALIL   81 (159)
Q Consensus         2 ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~   81 (159)
                      +|++.|.+++ .+..|.||||+|+..|+.+++++|++.+.++ +.++..|.||||+|+..++.+++++|++. +......
T Consensus        20 ~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~   96 (153)
T 1awc_B           20 ILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEGHANIVEVLLKH-GADVNAK   96 (153)
T ss_dssp             HHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCC
T ss_pred             HHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcChHHHHHHHHHc-CCCCCCC
Confidence            4556677665 4777888888888888888888888877776 46777788888888888888888888874 3444556


Q ss_pred             ccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeec
Q 035643           82 MERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMD  140 (159)
Q Consensus        82 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~l  140 (159)
                      +..|.||||+|+..++.+++++|++.|++   ++.+|..|.||+|+|+..|+.+++++|
T Consensus        97 ~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           97 DMLKMTALHWATEHNHQEVVELLIKYGAD---VHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCC---ccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            67788888888888888888888888777   777778888888888888887777665

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.97  E-value=2.3e-30  Score=169.15  Aligned_cols=151  Identities=24%  Similarity=0.255  Sum_probs=136.6

Q ss_pred             cccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhc
Q 035643            3 LRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILM   82 (159)
Q Consensus         3 l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~   82 (159)
                      +...+..++..+..|.||||+|+..|+.+++++|++.+.++ +.++..|.||||+|+..++.+++++|++.+ ......+
T Consensus        26 l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~  103 (231)
T 3aji_A           26 ILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGXDEIVKALLVKG-AHVNAVN  103 (231)
T ss_dssp             HHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCC
T ss_pred             HHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCCCCCCHHHHHHHcCHHHHHHHHHHcC-CCCCCCC
Confidence            33455668889999999999999999999999999999887 688999999999999999999999999954 4555678


Q ss_pred             cCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643           83 ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus        83 ~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      ..|.||||+|+..++.+++++|++.+.+   ++.++..|.||||+|+..|+.+++++|++. +.+++..+..|.||+
T Consensus       104 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L  176 (231)
T 3aji_A          104 QNGCTPLHYAASKNRHEIAVMLLEGGAN---PDAKDHYDATAMHRAAAKGNLKMVHILLFY-KASTNIQDTEGNTPL  176 (231)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTSCCHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCcHHHHHHHcCCHHHHHHHHhc-CCCccccCCCCCCHH
Confidence            8899999999999999999999999999   888999999999999999999999999998 668888888998874

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.97  E-value=6.8e-31  Score=162.44  Aligned_cols=142  Identities=18%  Similarity=0.121  Sum_probs=115.7

Q ss_pred             cccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCC-c
Q 035643           10 AGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVT-I   88 (159)
Q Consensus        10 ~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t-~   88 (159)
                      .+..+..|.||||+|+..|+.+++++|++.+.++ +.++..|.||||+|+ .++.+++++|++. +......+..|.| |
T Consensus         5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~-g~~~~~~d~~g~ttp   81 (156)
T 1bi7_B            5 AGSSMEPSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLH-GAEPNCADPATLTRP   81 (156)
T ss_dssp             -----CCSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTT-TCCCCCCCTTTCCCH
T ss_pred             ccCCCccchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHHHHHHHHc-CCCCCCcCCCCCcHH
Confidence            4566788999999999999999999999999887 678999999999996 8999999999995 4555667888998 9


Q ss_pred             hhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCC
Q 035643           89 LHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSG  158 (159)
Q Consensus        89 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~  158 (159)
                      ||+|+..++.+++++|++.|++   ++.+|..|.||||+|+..|+.+++++|+++ +.+++..+..|.|+
T Consensus        82 L~~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~  147 (156)
T 1bi7_B           82 VHDAAREGFLDTLVVLHRAGAR---LDVRDAWGRLPVDLAEELGHRDVARYLRAA-AGGTRGSNHARIDA  147 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCC---SSCCCTTCCCHHHHHHHHTCHHHHHHHSSC-C-------------
T ss_pred             HHHHHHCCCHHHHHHHHHcCCC---CcccCCCCCCHHHHHHHhCHHHHHHHHHHc-CCCCCccCcCcCcc
Confidence            9999999999999999999999   899999999999999999999999999999 66888888888775

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=6.8e-31  Score=176.17  Aligned_cols=146  Identities=19%  Similarity=0.253  Sum_probs=132.7

Q ss_pred             cccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHH-----HhCCHHHHHHHHhcCchhhhhhccC
Q 035643           10 AGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAA-----IRGNVNVLKELVKVRPQAALILMER   84 (159)
Q Consensus        10 ~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~-----~~~~~~~~~~l~~~~~~~~~~~~~~   84 (159)
                      +|..|.+|.||||+|+..|+.+++++|++.+....+..+..|.||+|+|+     ..++.+++++|++.+ ......+..
T Consensus       104 ~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g-~~~~~~~~~  182 (276)
T 4hbd_A          104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLG-NINAKASQA  182 (276)
T ss_dssp             HTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHS-CTTCCCTTT
T ss_pred             CcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcC-CCccccCCC
Confidence            88999999999999999999999999999998334789999999999999     667889999999955 445556778


Q ss_pred             CCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643           85 GVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus        85 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      |.||||+|+..|+.+++++|++.|++   ++.+|..|.||||+|+..|+.+++++|++..+.+++..+..|+||+
T Consensus       183 g~tpLh~A~~~g~~~~v~~Ll~~gad---~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL  254 (276)
T 4hbd_A          183 GQTALMLAVSHGRVDVVKALLACEAD---VNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTAL  254 (276)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCC---CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHH
Confidence            99999999999999999999999999   8999999999999999999999999999966889999999999874

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=2.2e-30  Score=161.70  Aligned_cols=138  Identities=22%  Similarity=0.252  Sum_probs=127.2

Q ss_pred             CCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhc
Q 035643           16 RKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNY   95 (159)
Q Consensus        16 ~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~   95 (159)
                      .|.||||.|+..|+.++++.|++.+.++ +.++..|.||||+|+..++.+++++|++. +......+..|.||||+|+..
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~   79 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQN-GADPQLLGKGRESALSLACSK   79 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHc
Confidence            5889999999999999999999999876 68899999999999999999999999995 455566788899999999999


Q ss_pred             CChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643           96 NQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus        96 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      ++.+++++|++.+++   ++.+|..|.||||+|+..|+.+++++|+++ +.+++..+..|.||+
T Consensus        80 ~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l  139 (167)
T 3v31_A           80 GYTDIVKMLLDCGVD---VNEYDWNGGTPLLYAVHGNHVKCVKMLLES-GADPTIETDSGYNSM  139 (167)
T ss_dssp             TCHHHHHHHHHHTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHH
T ss_pred             CCHHHHHHHHHCCCC---CCcCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHH
Confidence            999999999999999   899999999999999999999999999998 678888889998874

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.97  E-value=1.4e-30  Score=184.36  Aligned_cols=152  Identities=25%  Similarity=0.318  Sum_probs=129.9

Q ss_pred             ccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhh
Q 035643            2 ILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALIL   81 (159)
Q Consensus         2 ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~   81 (159)
                      +|++.|++++..+..|.||||+|+..|+.+++++|++.+.+. +..+..|.||||+|+..++.+++++|++.+ ......
T Consensus       230 ~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~  307 (437)
T 1n11_A          230 SLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHG-VMVDAT  307 (437)
T ss_dssp             HHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHHT-CCTTCC
T ss_pred             HHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCC-ccCCCC
Confidence            467788888888888888888888888888888888888877 577888888888888888888888888854 444556


Q ss_pred             ccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643           82 MERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus        82 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      +..|.||||+|+..++.+++++|++.|++   ++.+|..|.||||+|+..|+.+++++|+++ +.+++..+..|.||+
T Consensus       308 ~~~g~t~L~~A~~~g~~~~v~~Ll~~gad---~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~-ga~~~~~~~~g~t~l  381 (437)
T 1n11_A          308 TRMGYTPLHVASHYGNIKLVKFLLQHQAD---VNAKTKLGYSPLHQAAQQGHTDIVTLLLKN-GASPNEVSSDGTTPL  381 (437)
T ss_dssp             CSSCCCHHHHHHHSSCSHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCSSSCCHH
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHhcCCC---CCCCCCCCCCHHHHHHHCChHHHHHHHHHC-cCCCCCCCCCCCCHH
Confidence            77899999999999999999999999998   888999999999999999999999999998 678888888898864

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.97  E-value=2.1e-30  Score=174.55  Aligned_cols=142  Identities=18%  Similarity=0.087  Sum_probs=115.9

Q ss_pred             cccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCch
Q 035643           10 AGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTIL   89 (159)
Q Consensus        10 ~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l   89 (159)
                      ++..|..|+||||+|+..|+.+++++|++.+.++ +.++..|.||||+|+..|+.+++++|++. +......+..|.|||
T Consensus        52 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~t~L  129 (285)
T 3d9h_A           52 LMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV-NIITADHVSPLHEACLGGHLSCVKILLKH-GAQVNGVTADWHTPL  129 (285)
T ss_dssp             TCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCS-CEECTTCCCHHHHHHHTTCHHHHHHHHHT-TCCSSCCCTTCCCHH
T ss_pred             ccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHCCcHHHHHHHHHC-CCCCCCCCCCCCCHH
Confidence            5778999999999999999999999999999887 68999999999999999999999999995 445556677788888


Q ss_pred             hhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCC
Q 035643           90 HACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSG  158 (159)
Q Consensus        90 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~  158 (159)
                      |+|+..++.+++++|++.+++   ++. +..|.||||+|+..|+.+++++|++. +.+++..+..|.||
T Consensus       130 ~~A~~~~~~~~v~~Ll~~g~~---~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~t~  193 (285)
T 3d9h_A          130 FNACVSGSWDCVNLLLQHGAS---VQP-ESDLASPIHEAARRGHVECVNSLIAY-GGNIDHKISHLGTP  193 (285)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCC---SSC-SCTTSCHHHHHHHHTCHHHHHHHHHT-TCCTTCCBTTTBCH
T ss_pred             HHHHHcCHHHHHHHHHHCCCC---CCC-CCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCH
Confidence            888888888888888887777   443 33477777777777777777777776 44666666666665

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=3e-30  Score=160.81  Aligned_cols=141  Identities=26%  Similarity=0.225  Sum_probs=88.2

Q ss_pred             cCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhh
Q 035643           14 DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACV   93 (159)
Q Consensus        14 ~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~   93 (159)
                      |.+|.+|||.|+..|+.++++.|++.+.......+..|.||||+|+..++.+++++|++. +......+..|.||||+|+
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~   83 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH-GADVHAKDKGGLVPLHNAC   83 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhc-CCCCCccCCCCCCHHHHHH
Confidence            445566666666666666666666644433345556666666666666666666666663 3334445556666666666


Q ss_pred             hcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643           94 NYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus        94 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      ..++.+++++|++.+++   ++.+|..|.||||+|+..|+.+++++|+++ +.+++..+..|.||+
T Consensus        84 ~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l  145 (165)
T 3twr_A           84 SYGHYEVAELLVKHGAV---VNVADLWKFTPLHEAAAKGKYEICKLLLQH-GADPTKKNRDGNTPL  145 (165)
T ss_dssp             HTTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCTG
T ss_pred             HcCcHHHHHHHHhCCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCChh
Confidence            66666666666666666   566666666666666666666666666666 455666666666653

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.97  E-value=4.7e-30  Score=168.54  Aligned_cols=150  Identities=23%  Similarity=0.281  Sum_probs=136.3

Q ss_pred             cCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCch---hhhhh
Q 035643            5 RKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQ---AALIL   81 (159)
Q Consensus         5 ~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~---~~~~~   81 (159)
                      +.|.+++..|..|.||||+|+..|+.+++++|++.+.++ +..+..|.||+|+|+..++.+++++|++.+..   .....
T Consensus        34 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~  112 (241)
T 1k1a_A           34 QGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEAR  112 (241)
T ss_dssp             HTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCC
T ss_pred             hcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccccc
Confidence            489999999999999999999999999999999999988 57899999999999999999999999996542   45566


Q ss_pred             ccCCCCchhhhhhcCChhHHHHHHhhcCCcccccccc-CCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643           82 MERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKD-DNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus        82 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      +..|.||||+|+..++.+++++|++.+.+   ++..+ ..|.||||+|+..|+.+++++|++. +.+++..+..|.||+
T Consensus       113 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L  187 (241)
T 1k1a_A          113 NYDGLTALHVAVNTECQETVQLLLERGAD---IDAVDIKSGRSPLIHAVENNSLSMVQLLLQH-GANVNAQMYSGSSAL  187 (241)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCBCTTSCBHH
T ss_pred             CcCCCcHHHHHHHcCCHHHHHHHHHcCCC---cccccccCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHH
Confidence            77899999999999999999999999999   78788 7899999999999999999999999 678888888998863

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.96  E-value=1.9e-31  Score=176.93  Aligned_cols=152  Identities=20%  Similarity=0.215  Sum_probs=131.3

Q ss_pred             cccCCCcccc----ccCCCCCHHHHHHHh---CChHHHHHHhhcCCccce----------ecCCCCCcHHHHHHHhCCHH
Q 035643            3 LRRKPEQAGE----LDSRKASPLHLAAAK---GYLDIVLKLVSVNPEMCF----------ARDIDGKNPLHIAAIRGNVN   65 (159)
Q Consensus         3 l~~~~~~~~~----~~~~g~t~l~~a~~~---~~~~~~~~ll~~~~~~~~----------~~~~~~~~~l~~a~~~~~~~   65 (159)
                      |++.|++++.    .|..|.||||+|+..   |+.+++++|++.+++...          .++..|.||||+|+..|+.+
T Consensus        25 l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~  104 (256)
T 2etb_A           25 LRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQ  104 (256)
T ss_dssp             HHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHH
T ss_pred             HHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHH
Confidence            4568999998    899999999999999   999999999998776521          23467999999999999999


Q ss_pred             HHHHHHhcCchhhhhhccC-------------CCCchhhhhhcCChhHHHHHHh---hcCCccccccccCCCCCHHHHHH
Q 035643           66 VLKELVKVRPQAALILMER-------------GVTILHACVNYNQLESLRLLVE---IRNDHEFVNSKDDNGSTILHLAV  129 (159)
Q Consensus        66 ~~~~l~~~~~~~~~~~~~~-------------~~t~l~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~~~~~tpl~~a~  129 (159)
                      ++++|++.+. .....+..             |.||||+|+..++.+++++|++   .|++   ++.+|..|+||||+|+
T Consensus       105 ~v~~Ll~~ga-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~---~n~~d~~g~TpLh~A~  180 (256)
T 2etb_A          105 CVKLLVENGA-DVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPAS---LEATDSLGNTVLHALV  180 (256)
T ss_dssp             HHHHHHHTTC-CTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC---TTCCCTTSCCHHHHHH
T ss_pred             HHHHHHHcCC-CCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC---cCccCCCCCCHHHHHH
Confidence            9999999654 44444544             9999999999999999999999   8999   8999999999999999


Q ss_pred             H--hCCcc-------eeeeccCCCccCc-------ccccCCCCCCC
Q 035643          130 L--EKQVE-------VFYMDFDRNNMDN-------NIFYGCGLSGY  159 (159)
Q Consensus       130 ~--~~~~~-------~~~~ll~~~~~~~-------~~~~~~g~~~~  159 (159)
                      .  .+..+       ++++|++. +.++       +..+..|+||+
T Consensus       181 ~~~~~~~~~~~~~~~iv~~Ll~~-ga~~~~~~~~~~~~d~~g~tpL  225 (256)
T 2etb_A          181 MIADNSPENSALVIHMYDGLLQM-GARLCPTVQLEEISNHQGLTPL  225 (256)
T ss_dssp             HHCCSCHHHHHHHHHHHHHHHHH-HHHHSTTCCGGGCCCTTSCCHH
T ss_pred             HcccCCchhhHHHHHHHHHHHHc-CCCcccccccccccCCCCCCHH
Confidence            9  67777       99999999 4556       78888999874

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.96  E-value=5.3e-30  Score=171.68  Aligned_cols=154  Identities=22%  Similarity=0.188  Sum_probs=105.6

Q ss_pred             ccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceec----------CCCCCcHHHHHHHhCCHHHHHHHH
Q 035643            2 ILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFAR----------DIDGKNPLHIAAIRGNVNVLKELV   71 (159)
Q Consensus         2 ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~----------~~~~~~~l~~a~~~~~~~~~~~l~   71 (159)
                      +|+++|++++..+..|.||||+|+..|+.+++++|++.+.++. ..          +..|.||||+|+..++.+++++|+
T Consensus        90 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  168 (285)
T 1wdy_A           90 LFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN-LRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL  168 (285)
T ss_dssp             HHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTT-CCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcc-cccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHH
Confidence            3455566666666666666666666666666666666555442 22          455566666666666666666666


Q ss_pred             hcCchhhhhhccCCCCchhhhhhcCC----hhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccC
Q 035643           72 KVRPQAALILMERGVTILHACVNYNQ----LESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMD  147 (159)
Q Consensus        72 ~~~~~~~~~~~~~~~t~l~~a~~~~~----~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~  147 (159)
                      +..+......+..|.||||+|+..++    .+++++|++.|++   ++.+|..|.||||+|+..|+.+++++|++..+.+
T Consensus       169 ~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~  245 (285)
T 1wdy_A          169 DEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD---VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE  245 (285)
T ss_dssp             HTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC---SSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCC
T ss_pred             HhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCC---CCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCC
Confidence            64344445556667777777777777    6777777777777   7778888888888888888888888888866778


Q ss_pred             cccccCCCCCCC
Q 035643          148 NNIFYGCGLSGY  159 (159)
Q Consensus       148 ~~~~~~~g~~~~  159 (159)
                      ++..+..|.||+
T Consensus       246 ~~~~~~~g~t~l  257 (285)
T 1wdy_A          246 INDTDSDGKTAL  257 (285)
T ss_dssp             TTCCCTTSCCHH
T ss_pred             ccccCCCCCcHH
Confidence            888888888763

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.96  E-value=1.3e-30  Score=181.36  Aligned_cols=151  Identities=17%  Similarity=0.226  Sum_probs=109.2

Q ss_pred             cccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCc--hhhhh
Q 035643            3 LRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRP--QAALI   80 (159)
Q Consensus         3 l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~--~~~~~   80 (159)
                      |++.|++++..|..|.||||+|+..|+.+++++|++.++++ +..+..|.||||+|+..|+.+++++|++.+.  .....
T Consensus       152 ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~  230 (373)
T 2fo1_E          152 CIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEE  230 (373)
T ss_dssp             HHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSC
T ss_pred             HHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCC-cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhh
Confidence            34789999999999999999999999999999999998887 5788888889999888888888888876321  12222


Q ss_pred             hcc--------------------------------------------CCCCchhhhhhcCChhHHHHHHhhc-CCccccc
Q 035643           81 LME--------------------------------------------RGVTILHACVNYNQLESLRLLVEIR-NDHEFVN  115 (159)
Q Consensus        81 ~~~--------------------------------------------~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~  115 (159)
                      .+.                                            .|.||||+|+..++.+++++|++.+ ++   ++
T Consensus       231 ~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~---~n  307 (373)
T 2fo1_E          231 LDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN---KD  307 (373)
T ss_dssp             CCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCC---TT
T ss_pred             cCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCC---cc
Confidence            222                                            4566666666666666666666554 55   56


Q ss_pred             cccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCC
Q 035643          116 SKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSG  158 (159)
Q Consensus       116 ~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~  158 (159)
                      .+|..|.||||+|+..|+.+++++|+++ +.+++..+..|.||
T Consensus       308 ~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-gad~~~~d~~g~t~  349 (373)
T 2fo1_E          308 KQDEDGKTPIMLAAQEGRIEVVMYLIQQ-GASVEAVDATDHTA  349 (373)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSSCCCSSSCCH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccCCCCCCCCH
Confidence            6666667777777777777777766666 45666666666665

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=4.5e-30  Score=159.98  Aligned_cols=137  Identities=23%  Similarity=0.281  Sum_probs=124.1

Q ss_pred             cccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhc
Q 035643            3 LRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILM   82 (159)
Q Consensus         3 l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~   82 (159)
                      +...+.+++..+..|.||||+|+..|+.+++++|++.+.++ +.++..|.||||+|+..++.+++++|++. +......+
T Consensus        28 l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~  105 (165)
T 3twr_A           28 CTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVAELLVKH-GAVVNVAD  105 (165)
T ss_dssp             CCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCC
T ss_pred             HHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHHHHcCcHHHHHHHHhC-CCCCCCcC
Confidence            34478888999999999999999999999999999999988 68899999999999999999999999994 45556678


Q ss_pred             cCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCc
Q 035643           83 ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNN  145 (159)
Q Consensus        83 ~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~  145 (159)
                      ..|.||||+|+..++.+++++|++.|++   ++.+|..|.||+|+|+. ++.+++++|+++|+
T Consensus       106 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          106 LWKFTPLHEAAAKGKYEICKLLLQHGAD---PTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCC---CcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence            8899999999999999999999999999   89999999999999877 88999999998864

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=3.2e-30  Score=162.72  Aligned_cols=137  Identities=19%  Similarity=0.169  Sum_probs=115.2

Q ss_pred             ccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhcc
Q 035643            4 RRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILME   83 (159)
Q Consensus         4 ~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~   83 (159)
                      ...+.+++..+..|.||||+|+..|+.+++++|++.+.++ +..+..|.||||+|+..++.+++++|++. +......+.
T Consensus        26 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d~  103 (179)
T 3f6q_A           26 DNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASHGHRDIVQKLLQY-KADINAVNE  103 (179)
T ss_dssp             HCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCT
T ss_pred             hcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCccCC
Confidence            3447788888888899999999988999998888888877 57888888899999988888899888884 455556677


Q ss_pred             CCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCc
Q 035643           84 RGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNN  145 (159)
Q Consensus        84 ~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~  145 (159)
                      .|.||||+|+..++.+++++|++.|++   ++.+|..|.||+++|+..++.+++++|++.+.
T Consensus       104 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~  162 (179)
T 3f6q_A          104 HGNVPLHYACFWGQDQVAEDLVANGAL---VSICNKYGEMPVDKAKAPLRELLRERAEKMGQ  162 (179)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCC---SSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCC---cchhccCCCCcHHHHHHHHHHHHHHHHHHhhc
Confidence            888899999988888899999888888   78888888999999888888888888888854

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.96  E-value=2.7e-30  Score=156.53  Aligned_cols=133  Identities=18%  Similarity=0.190  Sum_probs=116.8

Q ss_pred             CCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCC
Q 035643            7 PEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGV   86 (159)
Q Consensus         7 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~   86 (159)
                      |+++ .+|.+|.||||+|+..|+.+++++|++.+.++ +.++..|.||||+|+..++.+++++|++. +......+..|.
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~   77 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQH-KALVNTTGYQND   77 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCGGGC
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCcccCcCCCCC
Confidence            6777 78999999999999999999999999999988 68999999999999999999999999994 455566788899


Q ss_pred             CchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCc
Q 035643           87 TILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNN  145 (159)
Q Consensus        87 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~  145 (159)
                      ||||+|+..++.+++++|++.|++   ++.+|..|.||+++|+..+..++++++.+.+.
T Consensus        78 t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           78 SPLHDAAKNGHVDIVKLLLSYGAS---RNAVNIFGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence            999999999999999999999999   89999999999999999999999988877643

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=1.5e-29  Score=159.67  Aligned_cols=140  Identities=18%  Similarity=0.137  Sum_probs=125.4

Q ss_pred             CCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhh
Q 035643           15 SRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVN   94 (159)
Q Consensus        15 ~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~   94 (159)
                      .++.++||.|+..|+.++++.|++.+....+..+..|.||||+|+..++.+++++|++. +......+..|.||||+|+.
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~   81 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR-GARINVMNRGDDTPLHLAAS   81 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHH
Confidence            46789999999999999999999986655578999999999999999999999999995 45556678889999999999


Q ss_pred             cCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643           95 YNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus        95 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      .++.+++++|++.|++   ++.+|..|.||||+|+..++.+++++|+++ +.+++..+..|.||+
T Consensus        82 ~~~~~~v~~Ll~~g~~---~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl  142 (179)
T 3f6q_A           82 HGHRDIVQKLLQYKAD---INAVNEHGNVPLHYACFWGQDQVAEDLVAN-GALVSICNKYGEMPV  142 (179)
T ss_dssp             TTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSSBCCTTSCCGG
T ss_pred             cCCHHHHHHHHHcCCC---CCccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcchhccCCCCcH
Confidence            9999999999999999   899999999999999999999999999999 678889999999985

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.96  E-value=1.8e-29  Score=173.66  Aligned_cols=155  Identities=27%  Similarity=0.290  Sum_probs=132.8

Q ss_pred             ccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhh
Q 035643            2 ILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALIL   81 (159)
Q Consensus         2 ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~   81 (159)
                      +|.+.+.+++..|..|.||||+|+..|+.+++++|++.+.++ +.++..|.||||+|+..|+.+++++|++.+ ......
T Consensus        43 ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g-~~~~~~  120 (351)
T 3utm_A           43 LLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACSYGHYEVTELLLKHG-ACVNAM  120 (351)
T ss_dssp             HCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCC
T ss_pred             HHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHCCCHHHHHHHHHCC-CCCCCC
Confidence            466779999999999999999999999999999999999988 688999999999999999999999999954 455566


Q ss_pred             ccCCCCchhhhhhcCChhHHHHHHhhcCCcc-------------------------------------------------
Q 035643           82 MERGVTILHACVNYNQLESLRLLVEIRNDHE-------------------------------------------------  112 (159)
Q Consensus        82 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~-------------------------------------------------  112 (159)
                      +..|.||||+|+..++.+++++|++.|+++.                                                 
T Consensus       121 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  200 (351)
T 3utm_A          121 DLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLAL  200 (351)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHh
Confidence            7789999999999999988888888765521                                                 


Q ss_pred             --------------------------------------ccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCC
Q 035643          113 --------------------------------------FVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGC  154 (159)
Q Consensus       113 --------------------------------------~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~  154 (159)
                                                            .++.+|..|.||||+|+..|+.+++++|+++ +.+++..+..
T Consensus       201 ~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~n~~d~~  279 (351)
T 3utm_A          201 EIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKH-GAKMNALDSL  279 (351)
T ss_dssp             CCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTT
T ss_pred             hcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCC
Confidence                                                  1345677888999999999999999999888 6678888888


Q ss_pred             CCCCC
Q 035643          155 GLSGY  159 (159)
Q Consensus       155 g~~~~  159 (159)
                      |+||+
T Consensus       280 g~t~L  284 (351)
T 3utm_A          280 GQTAL  284 (351)
T ss_dssp             SCCHH
T ss_pred             CCCHH
Confidence            88864

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.96  E-value=1e-30  Score=174.87  Aligned_cols=142  Identities=20%  Similarity=0.216  Sum_probs=117.2

Q ss_pred             ccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCC--------------CCCcHHHHHHHhCCHHHHHHHHhc--Cch
Q 035643           13 LDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDI--------------DGKNPLHIAAIRGNVNVLKELVKV--RPQ   76 (159)
Q Consensus        13 ~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~--------------~~~~~l~~a~~~~~~~~~~~l~~~--~~~   76 (159)
                      .|..|.||||+|+..|+.+++++|++.++++ +.++.              .|.||||+|+..++.+++++|++.  .+.
T Consensus        97 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga  175 (273)
T 2pnn_A           97 SYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPA  175 (273)
T ss_dssp             TTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCC
T ss_pred             ccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCC
Confidence            5678999999999999999999999999988 46665              799999999999999999999993  345


Q ss_pred             hhhhhccCCCCchhhhhhcCC---------hhHHHHHHhhcCCccccc-------cccCCCCCHHHHHHHhCCcceeeec
Q 035643           77 AALILMERGVTILHACVNYNQ---------LESLRLLVEIRNDHEFVN-------SKDDNGSTILHLAVLEKQVEVFYMD  140 (159)
Q Consensus        77 ~~~~~~~~~~t~l~~a~~~~~---------~~~~~~Ll~~~~~~~~~~-------~~~~~~~tpl~~a~~~~~~~~~~~l  140 (159)
                      ....++..|.||||+|+..++         .+++++|++.|++   ++       .+|..|.||||+|+..|+.+++++|
T Consensus       176 d~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~---~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~L  252 (273)
T 2pnn_A          176 DISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAK---LHPTLKLEEITNRKGLTPLALAASSGKIGVLAYI  252 (273)
T ss_dssp             CTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH---HCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhh---cccccccccccCCCCCCHHHHHHHhChHHHHHHH
Confidence            556778899999999999888         7899999999988   65       4899999999999999999999999


Q ss_pred             cCCCccCcccccCCCCCC
Q 035643          141 FDRNNMDNNIFYGCGLSG  158 (159)
Q Consensus       141 l~~~~~~~~~~~~~g~~~  158 (159)
                      +++|..++......+.+|
T Consensus       253 l~~ga~dp~~~~~~~~~~  270 (273)
T 2pnn_A          253 LQREIHEPECRHAAAHHH  270 (273)
T ss_dssp             HHHHTC------------
T ss_pred             HHCCCCCchhhhhhhhhc
Confidence            999887888777666654

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.96  E-value=1.4e-29  Score=169.66  Aligned_cols=152  Identities=24%  Similarity=0.261  Sum_probs=107.7

Q ss_pred             ccccCCCccccc-cCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhh
Q 035643            2 ILRRKPEQAGEL-DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALI   80 (159)
Q Consensus         2 ll~~~~~~~~~~-~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~   80 (159)
                      +|++.|++++.. +..|.||||+|+..|+.+++++|++.+.++ +.++..|.||||+|+..|+.+++++|++.+ .....
T Consensus        23 ~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~  100 (285)
T 1wdy_A           23 QLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFLLAAIAGSVKLLKLFLSKG-ADVNE  100 (285)
T ss_dssp             HHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCTTC
T ss_pred             HHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCc
Confidence            456677777776 666777777777777777777777777766 466777777777777777777777777743 33445


Q ss_pred             hccCCCCchhhhhhcCChhHHHHHHhhcCCccccccc----------cCCCCCHHHHHHHhCCcceeeeccCCCccCccc
Q 035643           81 LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSK----------DDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNI  150 (159)
Q Consensus        81 ~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~----------~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~  150 (159)
                      .+..|.||||+|+..++.+++++|++.+++   ++..          +..|.||||+|+..|+.+++++|++..+.+++.
T Consensus       101 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~  177 (285)
T 1wdy_A          101 CDFYGFTAFMEAAVYGKVKALKFLYKRGAN---VNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA  177 (285)
T ss_dssp             BCTTCCBHHHHHHHTTCHHHHHHHHHTTCC---TTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTC
T ss_pred             cCcccCCHHHHHHHhCCHHHHHHHHHhCCC---cccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCc
Confidence            566677777777777777777777777766   4444          566777777777777777777777665666666


Q ss_pred             ccCCCCCC
Q 035643          151 FYGCGLSG  158 (159)
Q Consensus       151 ~~~~g~~~  158 (159)
                      .+..|.||
T Consensus       178 ~~~~g~t~  185 (285)
T 1wdy_A          178 CDNMGRNA  185 (285)
T ss_dssp             CCTTSCCH
T ss_pred             cCCCCCCH
Confidence            66666654

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=1.1e-29  Score=159.27  Aligned_cols=138  Identities=23%  Similarity=0.219  Sum_probs=125.6

Q ss_pred             CCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhcC
Q 035643           17 KASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYN   96 (159)
Q Consensus        17 g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~   96 (159)
                      +.+|||.|+..|+.+.++.+++.+....+.++..|.||||+|+..++.+++++|++.+ ......+..|.||||+|+..+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~   80 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWG-ADPHILAKERESALSLASTGG   80 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTCCCHHHHHHHTT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCchhhcccCCCHHHHHHHCC
Confidence            5689999999999999999999998866788999999999999999999999999955 445566788999999999999


Q ss_pred             ChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643           97 QLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus        97 ~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      +.+++++|++.+++   ++.+|..|.||||+|+..++.+++++|+++ +.+++..+..|.||+
T Consensus        81 ~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l  139 (172)
T 3v30_A           81 YTDIVGLLLERDVD---INIYDWNGGTPLLYAVRGNHVKCVEALLAR-GADLTTEADSGYTPM  139 (172)
T ss_dssp             CHHHHHHHHTTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHH
T ss_pred             CHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHH
Confidence            99999999999999   899999999999999999999999999998 678888889998874

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.96  E-value=1.2e-29  Score=175.95  Aligned_cols=153  Identities=24%  Similarity=0.238  Sum_probs=108.0

Q ss_pred             CccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcC---chh
Q 035643            1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVR---PQA   77 (159)
Q Consensus         1 ~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~---~~~   77 (159)
                      ++|++.|++++..|..|.||||+|+..|+.+++++|++.+++.   .+..|.||||+|+..|+.+++++|++..   ...
T Consensus        37 ~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~  113 (364)
T 3ljn_A           37 RRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH---SLWHGQKPIHLAVMANKTDLVVALVEGAKERGQM  113 (364)
T ss_dssp             HHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC---CCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc---cccCCCCHHHHHHHcCCHHHHHHHHHhccccCCC
Confidence            3578899999999999999999999999999999999988844   3345677777777777777777777641   111


Q ss_pred             hhh-----------------hccCCCCchhhhhhcC--ChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceee
Q 035643           78 ALI-----------------LMERGVTILHACVNYN--QLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFY  138 (159)
Q Consensus        78 ~~~-----------------~~~~~~t~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~  138 (159)
                      ...                 .+..|.||||+|+..|  +.+++++|++.|++   ++.+|..|.||||+|+..|+.++++
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~---~~~~d~~g~t~L~~A~~~g~~~~v~  190 (364)
T 3ljn_A          114 PESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS---PTAKDKADETPLMRAMEFRNREALD  190 (364)
T ss_dssp             HHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCC---TTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC---CcccCCCCCCHHHHHHHcCCHHHHH
Confidence            122                 4556677777777777  67777777777766   6666666667777777666666666


Q ss_pred             eccCCCcc----CcccccCCCCCCC
Q 035643          139 MDFDRNNM----DNNIFYGCGLSGY  159 (159)
Q Consensus       139 ~ll~~~~~----~~~~~~~~g~~~~  159 (159)
                      +|++.+..    +++..+..|+||+
T Consensus       191 ~Ll~~g~~~~~~~~~~~~~~g~t~L  215 (364)
T 3ljn_A          191 LMMDTVPSKSSLRLDYANKQGNSHL  215 (364)
T ss_dssp             HHHHHCSCSSSCCTTCCCTTCCCTT
T ss_pred             HHHhcccccccccccccCCCCCcHH
Confidence            66665322    1555666666654

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=2.1e-29  Score=155.59  Aligned_cols=131  Identities=21%  Similarity=0.255  Sum_probs=116.3

Q ss_pred             CCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCC
Q 035643            6 KPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERG   85 (159)
Q Consensus         6 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~   85 (159)
                      .+.+++..+..|.||||+ +..|+.+++++|++.+.++ +.++..|.||||+|+..|+.+++++|++.+ ......+..|
T Consensus        25 ~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g  101 (156)
T 1bd8_A           25 ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTGFLDTLKVLVEHG-ADVNVPDGTG  101 (156)
T ss_dssp             TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTS
T ss_pred             hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcC-CCCCCcCCCC
Confidence            356899999999999999 8899999999999999887 578899999999999999999999999954 5555667789


Q ss_pred             CCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCC
Q 035643           86 VTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDR  143 (159)
Q Consensus        86 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~  143 (159)
                      .||||+|+..++.+++++|++. ++   ++.+|..|.||+|+|+..|+.+++++|+++
T Consensus       102 ~t~L~~A~~~~~~~~v~~Ll~~-~~---~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          102 ALPIHLAVQEGHTAVVSFLAAE-SD---LHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHTT-SC---TTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             CcHHHHHHHhChHHHHHHHHhc-cC---CCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            9999999999999999999988 77   788999999999999999999999998875

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=1.5e-29  Score=158.29  Aligned_cols=141  Identities=28%  Similarity=0.341  Sum_probs=126.8

Q ss_pred             ccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhh
Q 035643           13 LDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHAC   92 (159)
Q Consensus        13 ~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a   92 (159)
                      ....+.++|++|+..|+.+++++|++.+.++ +.++..|.||||+|+..++.+++++|++. +......+..|.||||+|
T Consensus        10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A   87 (169)
T 2y1l_E           10 HGSDLGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKN-GADVNAVDHAGMTPLRLA   87 (169)
T ss_dssp             ---CHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHH
T ss_pred             CCCcccchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHH
Confidence            3456788999999999999999999999987 57899999999999999999999999995 455556788899999999


Q ss_pred             hhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643           93 VNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus        93 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      +..++.+++++|++.+++   ++.+|..|.||||+|+..++.+++++|+++ +.+++..+..|.||+
T Consensus        88 ~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l  150 (169)
T 2y1l_E           88 ALFGHLEIVEVLLKNGAD---VNANDMEGHTPLHLAAMFGHLEIVEVLLKN-GADVNAQDKFGKTAF  150 (169)
T ss_dssp             HHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHH
T ss_pred             HHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHH
Confidence            999999999999999999   899999999999999999999999999999 667888888898863

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.96  E-value=7.9e-30  Score=177.50  Aligned_cols=135  Identities=19%  Similarity=0.190  Sum_probs=111.7

Q ss_pred             CccccccCCCCCHHHHHHHhC---ChHHHHHHhhcCCccce-------ecCCCCCcHHHHHHHhCCHHHHHHHHhcCchh
Q 035643            8 EQAGELDSRKASPLHLAAAKG---YLDIVLKLVSVNPEMCF-------ARDIDGKNPLHIAAIRGNVNVLKELVKVRPQA   77 (159)
Q Consensus         8 ~~~~~~~~~g~t~l~~a~~~~---~~~~~~~ll~~~~~~~~-------~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~   77 (159)
                      ++++..|..|.||||+|+..+   +.+++++|++.+.++..       ..+..|.||||+|+..|+.+++++|++.++..
T Consensus       226 ~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~  305 (373)
T 2fo1_E          226 GDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN  305 (373)
T ss_dssp             HTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCC
T ss_pred             cChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCC
Confidence            566666666666666666665   66667777766665521       24567889999999999999999999866677


Q ss_pred             hhhhccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCc
Q 035643           78 ALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNN  145 (159)
Q Consensus        78 ~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~  145 (159)
                      ....+..|.||||+|+..|+.+++++|++.|++   ++.+|..|.||||+|+..|+.+++++|++++.
T Consensus       306 ~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad---~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a  370 (373)
T 2fo1_E          306 KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS---VEAVDATDHTARQLAQANNHHNIVDIFDRCRP  370 (373)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---SSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC-
T ss_pred             ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---ccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCc
Confidence            777888999999999999999999999999999   89999999999999999999999999999854

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.96  E-value=5.1e-29  Score=162.94  Aligned_cols=139  Identities=24%  Similarity=0.264  Sum_probs=124.3

Q ss_pred             CCCCHHHHHHHhCChHHHHHHhhc-CCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhh----hhhccCCCCchh
Q 035643           16 RKASPLHLAAAKGYLDIVLKLVSV-NPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAA----LILMERGVTILH   90 (159)
Q Consensus        16 ~g~t~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~----~~~~~~~~t~l~   90 (159)
                      .|.||||+|+..|+.++++.|++. +.++ +.++..|.||||+|+..|+.+++++|++.+....    ...+..|.||||
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~   80 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEV-HQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH   80 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCc-ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence            589999999999999999999997 7776 6889999999999999999999999999765543    345668999999


Q ss_pred             hhhhcCChhHHHHHHhhcCCccccccccC-------------CCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCC
Q 035643           91 ACVNYNQLESLRLLVEIRNDHEFVNSKDD-------------NGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLS  157 (159)
Q Consensus        91 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~-------------~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~  157 (159)
                      +|+..++.+++++|++.|++   ++.++.             .|.||||+|+..|+.+++++|+++ +.+++..+..|+|
T Consensus        81 ~A~~~~~~~~v~~Ll~~g~~---~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~t  156 (232)
T 2rfa_A           81 IAVINQNVNLVRALLARGAS---VSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEH-GADIRAQDSLGNT  156 (232)
T ss_dssp             HHHHTTCHHHHHHHHHTTCC---TTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCC
T ss_pred             HHHHcCCHHHHHHHHhCCCC---CCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCC
Confidence            99999999999999999988   666654             799999999999999999999998 6788999999998


Q ss_pred             CC
Q 035643          158 GY  159 (159)
Q Consensus       158 ~~  159 (159)
                      |+
T Consensus       157 ~L  158 (232)
T 2rfa_A          157 VL  158 (232)
T ss_dssp             HH
T ss_pred             HH
Confidence            74

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.96  E-value=3.4e-30  Score=173.50  Aligned_cols=135  Identities=16%  Similarity=0.213  Sum_probs=64.8

Q ss_pred             cccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCC-CcHHHHHHHhCCHHHHHHHHhcCchhhhhh
Q 035643            3 LRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDG-KNPLHIAAIRGNVNVLKELVKVRPQAALIL   81 (159)
Q Consensus         3 l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~-~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~   81 (159)
                      |+++|++++.+|..|.||||+|+..|+.+++++|++.++++ +.++..| .||||+|+..++.+++++|++.+....  .
T Consensus        81 Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~  157 (285)
T 3kea_A           81 LLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF--D  157 (285)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGG-GGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTC--C
T ss_pred             HHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccc--c
Confidence            34444445444444555555555555555555554444444 2444444 445555555555555555544332221  0


Q ss_pred             ccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCH-HHHHHHhCCcceeeeccCC
Q 035643           82 MERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTI-LHLAVLEKQVEVFYMDFDR  143 (159)
Q Consensus        82 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tp-l~~a~~~~~~~~~~~ll~~  143 (159)
                      ...|.||||+|+..++.+++++|++.|++   ++.+|..|.|| ||+|+..++.+++++|+++
T Consensus       158 ~~~g~t~L~~A~~~g~~~~v~~Ll~~gad---~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~  217 (285)
T 3kea_A          158 LAILLSCIHITIKNGHVDMMILLLDYMTS---TNTNNSLLFIPDIKLAIDNKDIEMLQALFKY  217 (285)
T ss_dssp             CSTHHHHHHHHHHTTCHHHHHHHHHHHHH---TCTTCCCBCCTTHHHHHHHTCHHHHHHHTTS
T ss_pred             ccCCccHHHHHHHcChHHHHHHHHHcCCC---CCcccCCCCChHHHHHHHcCCHHHHHHHHHc
Confidence            11344555555555555555555555544   44455555554 5555555555555555555

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=2e-29  Score=155.29  Aligned_cols=136  Identities=24%  Similarity=0.203  Sum_probs=123.9

Q ss_pred             CCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhcC
Q 035643           17 KASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYN   96 (159)
Q Consensus        17 g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~   96 (159)
                      ..++|+.|+..|+.+++++|++.+.+.  ..+..|.||||+|+..|+.+++++|++.+ ......+..|.||||+|+..+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~   78 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPF--TTDWLGTSPLHLAAQYGHFSTTEVLLRAG-VSRDARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCC--CCCTTCCCHHHHHHHHTCHHHHHHHHTTT-CCTTCCCTTCCCHHHHHHHHT
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCC--CcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcC
Confidence            357999999999999999999999876  36888999999999999999999999944 455667888999999999999


Q ss_pred             ChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643           97 QLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus        97 ~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      +.+++++|++.|++   ++.+|..|.||||+|+..++.+++++|+++ +.+++..+..|.||+
T Consensus        79 ~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l  137 (153)
T 1awc_B           79 HANIVEVLLKHGAD---VNAKDMLKMTALHWATEHNHQEVVELLIKY-GADVHTQSKFCKTAF  137 (153)
T ss_dssp             CHHHHHHHHTTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHH
T ss_pred             hHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHH
Confidence            99999999999999   899999999999999999999999999999 678888889998874

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.96  E-value=2e-29  Score=152.56  Aligned_cols=128  Identities=24%  Similarity=0.253  Sum_probs=115.4

Q ss_pred             cccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhh
Q 035643           12 ELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHA   91 (159)
Q Consensus        12 ~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~   91 (159)
                      .....+.||||+|+..|+.+++++|++.+.++ +.++..|.||||+|+..++.+++++|++. +......+..|.||||+
T Consensus         9 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~   86 (136)
T 2jab_A            9 HHGSDLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKN-GADVNAVDAIGFTPLHL   86 (136)
T ss_dssp             ---CHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHH
T ss_pred             cccccccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCHHHH
Confidence            34566889999999999999999999999987 68899999999999999999999999995 45556678889999999


Q ss_pred             hhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCC
Q 035643           92 CVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRN  144 (159)
Q Consensus        92 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~  144 (159)
                      |+..++.+++++|++.|++   ++.+|..|.||+|+|+..++.+++++|++.|
T Consensus        87 A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           87 AAFIGHLEIAEVLLKHGAD---VNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHHcCCHHHHHHHHHcCCC---CcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            9999999999999999999   8899999999999999999999999998764

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.96  E-value=8e-30  Score=171.69  Aligned_cols=148  Identities=19%  Similarity=0.116  Sum_probs=133.2

Q ss_pred             CccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhh
Q 035643            1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALI   80 (159)
Q Consensus         1 ~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~   80 (159)
                      ++|++.|++++..  +|.||||+|+..|+.+++++|++.++++ +.++..|.||||+|+..|+.+++++|++.+ .....
T Consensus        48 ~~Ll~~g~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~  123 (285)
T 3kea_A           48 CTLLNAGALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKN-WRLMF  123 (285)
T ss_dssp             HHHHHTTGGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHC-GGGGG
T ss_pred             HHHHhCCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhcC-CCCCc
Confidence            3578899999988  4999999999999999999999999998 578999999999999999999999999964 55566


Q ss_pred             hccCC-CCchhhhhhcCChhHHHHHHhhcCCccccccccC-CCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCC
Q 035643           81 LMERG-VTILHACVNYNQLESLRLLVEIRNDHEFVNSKDD-NGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSG  158 (159)
Q Consensus        81 ~~~~~-~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~-~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~  158 (159)
                      .+..| .||||+|+..++.+++++|++.+++   .  .+. .|.||||+|+..|+.+++++|+++ +.+++..+..|+||
T Consensus       124 ~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~---~--~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-gad~n~~~~~g~t~  197 (285)
T 3kea_A          124 YGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS---T--FDLAILLSCIHITIKNGHVDMMILLLDY-MTSTNTNNSLLFIP  197 (285)
T ss_dssp             CSSSGGGSHHHHHHHTTCHHHHHHHHTTSCT---T--CCCSTHHHHHHHHHHTTCHHHHHHHHHH-HHHTCTTCCCBCCT
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHhCCCc---c--ccccCCccHHHHHHHcChHHHHHHHHHc-CCCCCcccCCCCCh
Confidence            77778 8999999999999999999999887   3  233 899999999999999999999999 77888899999887

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=9.5e-30  Score=158.00  Aligned_cols=139  Identities=23%  Similarity=0.294  Sum_probs=126.1

Q ss_pred             CCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhh
Q 035643           15 SRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVN   94 (159)
Q Consensus        15 ~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~   94 (159)
                      ....||||.|+..|+.+++++|++.+.++ +.++..|.||||+|+. ++.+++++|++. +......+..|.||||+|+.
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~   79 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMKL-GNPEIARRLLLR-GANPDLKDRTGFAVIHDAAR   79 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCCS-SCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHH
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHhCCCCc-cccCccCccHHHHHHc-CcHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHH
Confidence            35678999999999999999999999888 6889999999999999 999999999995 45556678889999999999


Q ss_pred             cCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643           95 YNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus        95 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      .++.+++++|++.+++   ++.+|..|.||||+|+..|+.+++++|++++....+..+..|.||+
T Consensus        80 ~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l  141 (162)
T 1ihb_A           80 AGFLDTLQTLLEFQAD---VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTAC  141 (162)
T ss_dssp             HTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHH
T ss_pred             cCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHH
Confidence            9999999999999999   8999999999999999999999999999997776788888998874

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.96  E-value=7e-29  Score=147.87  Aligned_cols=125  Identities=36%  Similarity=0.529  Sum_probs=115.6

Q ss_pred             CCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhc
Q 035643           16 RKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNY   95 (159)
Q Consensus        16 ~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~   95 (159)
                      +|.||||+|+..|+.+++++|++.+.++ +..+..|.||+|+|+..++.+++++|++. +......+..|.||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~l~~A~~~   78 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARN   78 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHHc-CCCCcccCCCCCcHHHHHHHc
Confidence            5899999999999999999999999887 57899999999999999999999999994 455566778899999999999


Q ss_pred             CChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCc
Q 035643           96 NQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNN  145 (159)
Q Consensus        96 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~  145 (159)
                      ++.+++++|++.+++   ++.+|..|.||+++|+..++.+++++|+++|+
T Consensus        79 ~~~~~~~~Ll~~g~~---~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           79 GHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             TCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             ChHHHHHHHHHcCCC---CcccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            999999999999999   88999999999999999999999999998854

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.96  E-value=4.4e-29  Score=176.66  Aligned_cols=152  Identities=20%  Similarity=0.257  Sum_probs=112.8

Q ss_pred             ccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhh
Q 035643            2 ILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALIL   81 (159)
Q Consensus         2 ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~   81 (159)
                      +|+++|.+++..+.+|.||||+|+..|+.+++++|++.+.+. +..+..|.||||+|+..|+.+++++|++.+ ......
T Consensus       197 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~  274 (437)
T 1n11_A          197 LLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA-NAESVQGVTPLHLAAQEGHAEMVALLLSKQ-ANGNLG  274 (437)
T ss_dssp             HHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTT-CCTTCC
T ss_pred             HHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHhcC-CCCCCC
Confidence            455566666666666666666666666666666666666655 456666777777777777777777777633 334455


Q ss_pred             ccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643           82 MERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus        82 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      +..|.||||+|+..++.+++++|++.+.+   ++.++..|.||||+|+..|+.+++++|+++ +.+++..+..|+||+
T Consensus       275 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-gad~n~~~~~g~t~L  348 (437)
T 1n11_A          275 NKSGLTPLHLVAQEGHVPVADVLIKHGVM---VDATTRMGYTPLHVASHYGNIKLVKFLLQH-QADVNAKTKLGYSPL  348 (437)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHHTCC---TTCCCSSCCCHHHHHHHSSCSHHHHHHHHT-TCCTTCCCTTSCCHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCcc---CCCCCCCCCCHHHHHHHcCcHHHHHHHHhc-CCCCCCCCCCCCCHH
Confidence            66788888888888888888888888888   788888899999999999999999999988 667888888888864

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.96  E-value=6.4e-30  Score=169.54  Aligned_cols=128  Identities=28%  Similarity=0.308  Sum_probs=115.4

Q ss_pred             cCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCC-------------CCcHHHHHHHhCCHHHHHHHHhc--Cchhh
Q 035643           14 DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDID-------------GKNPLHIAAIRGNVNVLKELVKV--RPQAA   78 (159)
Q Consensus        14 ~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~-------------~~~~l~~a~~~~~~~~~~~l~~~--~~~~~   78 (159)
                      |..|.||||+|+..|+.++++.|++.++++ +.++..             |.||||+|+..|+.+++++|++.  .+...
T Consensus        87 d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~  165 (256)
T 2etb_A           87 FYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASL  165 (256)
T ss_dssp             TTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT
T ss_pred             cccCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCc
Confidence            477999999999999999999999999988 466665             99999999999999999999994  34556


Q ss_pred             hhhccCCCCchhhhhh--cCChh-------HHHHHHhhcCCcccc-------ccccCCCCCHHHHHHHhCCcceeeeccC
Q 035643           79 LILMERGVTILHACVN--YNQLE-------SLRLLVEIRNDHEFV-------NSKDDNGSTILHLAVLEKQVEVFYMDFD  142 (159)
Q Consensus        79 ~~~~~~~~t~l~~a~~--~~~~~-------~~~~Ll~~~~~~~~~-------~~~~~~~~tpl~~a~~~~~~~~~~~ll~  142 (159)
                      ..++..|.||||+|+.  .++.+       ++++|++.|++   +       +.+|..|.||||+|+..|+.+++++|++
T Consensus       166 n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~---~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~  242 (256)
T 2etb_A          166 EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGAR---LCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQ  242 (256)
T ss_dssp             TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH---HSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCC---cccccccccccCCCCCCHHHHHHHhCCHHHHHHHHh
Confidence            6778899999999998  77877       99999999998   7       8899999999999999999999999999


Q ss_pred             CCc
Q 035643          143 RNN  145 (159)
Q Consensus       143 ~~~  145 (159)
                      ++.
T Consensus       243 ~g~  245 (256)
T 2etb_A          243 REF  245 (256)
T ss_dssp             HHH
T ss_pred             CCC
Confidence            854

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.96  E-value=4.7e-29  Score=172.90  Aligned_cols=129  Identities=22%  Similarity=0.247  Sum_probs=120.2

Q ss_pred             ccCCCCCHHHHHHHhC--ChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchh----hhhhccCCC
Q 035643           13 LDSRKASPLHLAAAKG--YLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQA----ALILMERGV   86 (159)
Q Consensus        13 ~~~~g~t~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~----~~~~~~~~~   86 (159)
                      .+..|.||||+|+..|  +.+++++|++.+.++ +.++..|.||||+|+..|+.+++++|++.+...    ....+..|.
T Consensus       134 ~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~  212 (364)
T 3ljn_A          134 KHCKGQTALHWCVGLGPEYLEMIKILVQLGASP-TAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGN  212 (364)
T ss_dssp             EEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCC
T ss_pred             CCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCC
Confidence            8999999999999999  999999999999988 689999999999999999999999999955441    566788899


Q ss_pred             CchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCc
Q 035643           87 TILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNN  145 (159)
Q Consensus        87 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~  145 (159)
                      ||||+|+..++.+++++|++.|++   ++.+|..|.||||+|+..|+.+++++|++++.
T Consensus       213 t~L~~A~~~g~~~~v~~Ll~~gad---~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~  268 (364)
T 3ljn_A          213 SHLHWAILINWEDVAMRFVEMGID---VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTD  268 (364)
T ss_dssp             CTTHHHHTTTCHHHHHHHHTTTCC---TTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSC
T ss_pred             cHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHhChHHHHHHHHHcCC
Confidence            999999999999999999999999   89999999999999999999999999999853

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=1e-29  Score=166.26  Aligned_cols=149  Identities=17%  Similarity=0.112  Sum_probs=115.2

Q ss_pred             CccccCCCcccccc---CCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchh
Q 035643            1 EILRRKPEQAGELD---SRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQA   77 (159)
Q Consensus         1 ~ll~~~~~~~~~~~---~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~   77 (159)
                      +.|++.|++++..+   .++.||||+|+..|+.++++.|++.+.++ +.++..|.||||+|+..|+.+++++|++. +..
T Consensus         2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-ga~   79 (229)
T 2vge_A            2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICGANYSIVDFLITA-GAN   79 (229)
T ss_dssp             --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCC
T ss_pred             eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCC
Confidence            35677788776555   44566789999999999999999988887 57888999999999999999999999985 455


Q ss_pred             hhhhccCCCCchhhhhhcCChhHHHHHHhhcCCcccccccc-CCCCCHHHHH--HHhCCcceeeeccCCCccCcccccCC
Q 035643           78 ALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKD-DNGSTILHLA--VLEKQVEVFYMDFDRNNMDNNIFYGC  154 (159)
Q Consensus        78 ~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~~~tpl~~a--~~~~~~~~~~~ll~~~~~~~~~~~~~  154 (159)
                      ....+..|.||||+|+..++.+++++|++.|++   ++.++ ..|.||||+|  +..++.+++++|++. +.+++..+..
T Consensus        80 ~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~---~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~-ga~~~~~~~~  155 (229)
T 2vge_A           80 VNSPDSHGWTPLHCAASCNDTVICMALVQHGAA---IFATTLSDGATAFEKCDPYREGYADCATYLADV-EQSMGLMNSG  155 (229)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC---TTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHH-HHHTTTSGGG
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---cccccCCCCCCHHHHHHHHhcChHHHHHHHHHc-CCCcccccCC
Confidence            566777899999999999999999999999988   77776 5899999999  888899999888887 3344444433


Q ss_pred             C
Q 035643          155 G  155 (159)
Q Consensus       155 g  155 (159)
                      |
T Consensus       156 ~  156 (229)
T 2vge_A          156 A  156 (229)
T ss_dssp             E
T ss_pred             c
Confidence            3

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.95  E-value=2.3e-29  Score=168.16  Aligned_cols=138  Identities=22%  Similarity=0.291  Sum_probs=121.6

Q ss_pred             CccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhh
Q 035643            1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALI   80 (159)
Q Consensus         1 ~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~   80 (159)
                      ++|++.|++++..+..|.||+|+|+..++.++++.|++.++++ +.+|..|.||||+|+..|+.+++++|++.+ ...+.
T Consensus       103 ~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g-advn~  180 (269)
T 4b93_B          103 PLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP-NKKDLSGNTPLIYACSGGHHELVALLLQHG-ASINA  180 (269)
T ss_dssp             HHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCGGGHHHHHHTT-CCTTC
T ss_pred             HHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHHCC-CCCCc
Confidence            3678999999999999999999999999999999999999988 689999999999999999999999999954 55667


Q ss_pred             hccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCC-cceeeeccCC
Q 035643           81 LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQ-VEVFYMDFDR  143 (159)
Q Consensus        81 ~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~-~~~~~~ll~~  143 (159)
                      .+..|.||||+|+..|+.+++++|++.|++   ++.+|..|+||||+|+..+. .++++++.+.
T Consensus       181 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad---~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~  241 (269)
T 4b93_B          181 SNNKGNTALHEAVIEKHVFVVELLLLHGAS---VQVLNKRQRTAVDCAEQNSKIMELLQVVPSC  241 (269)
T ss_dssp             BCTTSCBHHHHHHHTTCHHHHHHHHHTTCC---SCCCCTTSCCSGGGSCTTCHHHHHTTC----
T ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHhCCcHHHHHHHHHHh
Confidence            788999999999999999999999999999   89999999999999987764 3444444443

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.95  E-value=2.1e-28  Score=160.37  Aligned_cols=138  Identities=20%  Similarity=0.243  Sum_probs=100.6

Q ss_pred             ccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhh
Q 035643            2 ILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALIL   81 (159)
Q Consensus         2 ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~   81 (159)
                      .|++.|++++..+..|.||||+|+..|+.+++++|++.+.+.....+..|.||||+|+..++.+++++|++. +......
T Consensus        27 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~  105 (240)
T 3eu9_A           27 ELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY-GADPSLI  105 (240)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHT-TCCTTCC
T ss_pred             HHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHc-CCCCccc
Confidence            467788888888888999999999999999999999888877656666688899999998888888888884 3444555


Q ss_pred             ccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCC-cceeeeccCC
Q 035643           82 MERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQ-VEVFYMDFDR  143 (159)
Q Consensus        82 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~-~~~~~~ll~~  143 (159)
                      +..|.||||+|+..++.+++++|++.+.+   ++.++..|.||+|+|+..+. .+++++|++.
T Consensus       106 ~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~---~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~  165 (240)
T 3eu9_A          106 DGEGCSCIHLAAQFGHTSIVAYLIAKGQD---VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF  165 (240)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHCCSSTTHHHHHHT
T ss_pred             CCCCCCHHHHHHHcCHHHHHHHHHhcCCC---ccccCCCCCcHHHHHHHhCChHHHHHHHHhc
Confidence            67788888888888888888888887766   44444444444444443332 3333444333

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.95  E-value=2.8e-29  Score=168.32  Aligned_cols=140  Identities=24%  Similarity=0.291  Sum_probs=128.2

Q ss_pred             ccccCCC-ccccccCCCCCHHHHHH-----HhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCc
Q 035643            2 ILRRKPE-QAGELDSRKASPLHLAA-----AKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRP   75 (159)
Q Consensus         2 ll~~~~~-~~~~~~~~g~t~l~~a~-----~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~   75 (159)
                      +|++.|+ +++..+..|.||||+|+     ..++.++++.|++.+... ...+..|.||||+|+..|+.+++++|++. +
T Consensus       129 ~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~-g  206 (276)
T 4hbd_A          129 QLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLAC-E  206 (276)
T ss_dssp             HHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHT-T
T ss_pred             HHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhC-C
Confidence            5778887 99999999999999999     678999999999999776 57888999999999999999999999995 4


Q ss_pred             hhhhhhccCCCCchhhhhhcCChhHHHHHHh-hcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCcc
Q 035643           76 QAALILMERGVTILHACVNYNQLESLRLLVE-IRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNM  146 (159)
Q Consensus        76 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~  146 (159)
                      ...+..+..|.||||+|+..|+.+++++|++ .|++   ++.+|..|.||||+|+..|+.+++++|+++.+.
T Consensus       207 ad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad---~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~i  275 (276)
T 4hbd_A          207 ADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCD---ISLTDRDGSTALMVALDAGQSEIASMLYSRMNI  275 (276)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCCC
T ss_pred             CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC---CcCcCCCCCCHHHHHHHcCCHHHHHHHHhccCC
Confidence            5566778899999999999999999999999 8999   899999999999999999999999999988653

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.95  E-value=1.7e-29  Score=167.85  Aligned_cols=135  Identities=21%  Similarity=0.247  Sum_probs=118.9

Q ss_pred             ccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecC--------------CCCCcHHHHHHHhCCHHHHHHHHhc-
Q 035643            9 QAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARD--------------IDGKNPLHIAAIRGNVNVLKELVKV-   73 (159)
Q Consensus         9 ~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~--------------~~~~~~l~~a~~~~~~~~~~~l~~~-   73 (159)
                      +++..|..|.||||+|+..|+.+++++|++.++++ +..+              ..|.||||+|+..|+.+++++|++. 
T Consensus        85 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  163 (260)
T 3jxi_A           85 PFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENG  163 (260)
T ss_dssp             CBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred             cccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            34555668999999999999999999999999988 4666              6899999999999999999999993 


Q ss_pred             -CchhhhhhccCCCCchhhhhhcCC---------hhHHHHHHhhcCCcccc-------ccccCCCCCHHHHHHHhCCcce
Q 035643           74 -RPQAALILMERGVTILHACVNYNQ---------LESLRLLVEIRNDHEFV-------NSKDDNGSTILHLAVLEKQVEV  136 (159)
Q Consensus        74 -~~~~~~~~~~~~~t~l~~a~~~~~---------~~~~~~Ll~~~~~~~~~-------~~~~~~~~tpl~~a~~~~~~~~  136 (159)
                       .+......+..|.||||+|+..++         .+++++|++.|++   +       +.+|..|.||||+|+..|+.++
T Consensus       164 ~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~---~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~  240 (260)
T 3jxi_A          164 HKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAK---LFPDTNLEALLNNDGLSPLMMAAKTGKIGI  240 (260)
T ss_dssp             SCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHH---HCTTCCGGGCCCTTSCCHHHHHHHTTCHHH
T ss_pred             ccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcc---cccccchhhcccCCCCCHHHHHHHcCCHHH
Confidence             345556778899999999998887         6899999999988   6       6799999999999999999999


Q ss_pred             eeeccCCCccC
Q 035643          137 FYMDFDRNNMD  147 (159)
Q Consensus       137 ~~~ll~~~~~~  147 (159)
                      +++|++++...
T Consensus       241 v~~Ll~~g~~~  251 (260)
T 3jxi_A          241 FQHIIRREIAD  251 (260)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHhCCCc
Confidence            99999986543

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=4.5e-29  Score=164.14  Aligned_cols=139  Identities=17%  Similarity=0.110  Sum_probs=113.9

Q ss_pred             CccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhh
Q 035643            1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALI   80 (159)
Q Consensus         1 ~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~   80 (159)
                      +.|+++|++++.. ..|.||||+|+..|+.++++.|++.++++ +.+|..|.||||+|+..|+.+++++|++.+ ...+.
T Consensus        22 ~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~   98 (239)
T 1ycs_B           22 SERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQFG-VNVNA   98 (239)
T ss_dssp             ----------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHHTCHHHHHHHHHHT-CCTTC
T ss_pred             HHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCc
Confidence            3578999999864 78999999999999999999999999987 688999999999999999999999999954 55566


Q ss_pred             hccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCC-CHHHHH--HHhCCcceeeeccCCCc
Q 035643           81 LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGS-TILHLA--VLEKQVEVFYMDFDRNN  145 (159)
Q Consensus        81 ~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~-tpl~~a--~~~~~~~~~~~ll~~~~  145 (159)
                      .+..|.||||+|+..++.+++++|++.|++   ++.++..+. ||+|+|  +..|+.+++++|++.+.
T Consensus        99 ~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a  163 (239)
T 1ycs_B           99 ADSDGWTPLHCAASCNNVQVCKFLVESGAA---VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE  163 (239)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---cceecCCCCcchHHHHHHhhhccHHHHHHHHHhhh
Confidence            788999999999999999999999999999   888888877 999999  77899999999998743

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.95  E-value=2e-29  Score=167.42  Aligned_cols=151  Identities=20%  Similarity=0.181  Sum_probs=127.6

Q ss_pred             ccCCCcccccc----CCCCCHHHHHH---HhCChHHHHHHhhcCCcc----------ceecCCCCCcHHHHHHHhCCHHH
Q 035643            4 RRKPEQAGELD----SRKASPLHLAA---AKGYLDIVLKLVSVNPEM----------CFARDIDGKNPLHIAAIRGNVNV   66 (159)
Q Consensus         4 ~~~~~~~~~~~----~~g~t~l~~a~---~~~~~~~~~~ll~~~~~~----------~~~~~~~~~~~l~~a~~~~~~~~   66 (159)
                      ++.|++++..+    ..|.||||+|+   ..|+.+++++|++.+.+.          ....+..|.||||+|+..|+.++
T Consensus        29 ~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~  108 (260)
T 3jxi_A           29 LTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHY  108 (260)
T ss_dssp             HHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHH
T ss_pred             HhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHH
Confidence            35788888776    67999999999   779999999999876432          13445589999999999999999


Q ss_pred             HHHHHhcCchhhhhhc--------------cCCCCchhhhhhcCChhHHHHHHh---hcCCccccccccCCCCCHHHHHH
Q 035643           67 LKELVKVRPQAALILM--------------ERGVTILHACVNYNQLESLRLLVE---IRNDHEFVNSKDDNGSTILHLAV  129 (159)
Q Consensus        67 ~~~l~~~~~~~~~~~~--------------~~~~t~l~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~~~~~tpl~~a~  129 (159)
                      +++|++.+. .....+              ..|.||||+|+..++.+++++|++   .|++   ++.+|..|.||||+|+
T Consensus       109 v~~Ll~~ga-~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~---~~~~d~~g~TpLh~A~  184 (260)
T 3jxi_A          109 VELLVEKGA-DVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQAD---LRRQDSRGNTVLHALV  184 (260)
T ss_dssp             HHHHHHTTC-CTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC---TTCCCTTSCCHHHHHH
T ss_pred             HHHHHhCCC-CcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC---CcccCCCCCcHHHHHH
Confidence            999999554 444444              579999999999999999999999   8888   8999999999999999


Q ss_pred             HhCC---------cceeeeccCCCccCc-------ccccCCCCCCC
Q 035643          130 LEKQ---------VEVFYMDFDRNNMDN-------NIFYGCGLSGY  159 (159)
Q Consensus       130 ~~~~---------~~~~~~ll~~~~~~~-------~~~~~~g~~~~  159 (159)
                      ..+.         .+++++|+++| .++       +..+..|+||+
T Consensus       185 ~~~~~~~~~~~~~~~~v~~Ll~~g-a~~~~~~~~~~~~d~~g~tpL  229 (260)
T 3jxi_A          185 AIADNTRENTKFVTKMYDLLLIKC-AKLFPDTNLEALLNNDGLSPL  229 (260)
T ss_dssp             HHCCSSHHHHHHHHHHHHHHHHHH-HHHCTTCCGGGCCCTTSCCHH
T ss_pred             HhccCchhHHHHHHHHHHHHHHhC-cccccccchhhcccCCCCCHH
Confidence            9887         68999999984 455       67888998874

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=1.4e-28  Score=151.85  Aligned_cols=136  Identities=26%  Similarity=0.264  Sum_probs=122.2

Q ss_pred             CCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhcC
Q 035643           17 KASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYN   96 (159)
Q Consensus        17 g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~   96 (159)
                      +.||||+|+..|+.++++.|++......+..+..|.||||+ +..++.+++++|++. +......+..|.||||+|+..+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~   79 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQ-GASPNVQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcC
Confidence            56899999999999999999988322336789999999999 999999999999995 4555667888999999999999


Q ss_pred             ChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643           97 QLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus        97 ~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      +.+++++|++.|++   ++.+|..|.||||+|+..|+.+++++|++.  .+++..+..|.||+
T Consensus        80 ~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~g~t~l  137 (156)
T 1bd8_A           80 FLDTLKVLVEHGAD---VNVPDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPL  137 (156)
T ss_dssp             CHHHHHHHHHTTCC---SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT--SCTTCCCTTSCCHH
T ss_pred             cHHHHHHHHHcCCC---CCCcCCCCCcHHHHHHHhChHHHHHHHHhc--cCCCCcCCCCCCHH
Confidence            99999999999999   899999999999999999999999999998  78888888998874

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.95  E-value=8e-29  Score=165.69  Aligned_cols=149  Identities=21%  Similarity=0.198  Sum_probs=125.2

Q ss_pred             CCCccc----cccCCCCCHHHHHHHh---CChHHHHHHhhcCCccc----------eecCCCCCcHHHHHHHhCCHHHHH
Q 035643            6 KPEQAG----ELDSRKASPLHLAAAK---GYLDIVLKLVSVNPEMC----------FARDIDGKNPLHIAAIRGNVNVLK   68 (159)
Q Consensus         6 ~~~~~~----~~~~~g~t~l~~a~~~---~~~~~~~~ll~~~~~~~----------~~~~~~~~~~l~~a~~~~~~~~~~   68 (159)
                      .+.+++    ..|..|.||||+|+..   |+.+++++|++.+++..          ...+..|.||||+|+..|+.++++
T Consensus        39 ~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~  118 (273)
T 2pnn_A           39 SKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVT  118 (273)
T ss_dssp             SCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHH
T ss_pred             cccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHH
Confidence            566665    4588999999999987   99999999999865421          125678999999999999999999


Q ss_pred             HHHhcCchhhhhhcc--------------CCCCchhhhhhcCChhHHHHHHh---hcCCccccccccCCCCCHHHHHHHh
Q 035643           69 ELVKVRPQAALILME--------------RGVTILHACVNYNQLESLRLLVE---IRNDHEFVNSKDDNGSTILHLAVLE  131 (159)
Q Consensus        69 ~l~~~~~~~~~~~~~--------------~~~t~l~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~~~~~tpl~~a~~~  131 (159)
                      +|++.+ ......+.              .|.||||+|+..++.+++++|++   .|++   ++.+|..|+||||+|+..
T Consensus       119 ~Ll~~g-a~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad---~~~~d~~g~tpLh~A~~~  194 (273)
T 2pnn_A          119 LLVENG-ADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD---ISARDSVGNTVLHALVEV  194 (273)
T ss_dssp             HHHHTT-CCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCC---TTCCCTTSCCHHHHHHHH
T ss_pred             HHHHCC-CCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCC---ceeeCCCCCcHHHHHHHc
Confidence            999965 44444454              69999999999999999999999   8899   899999999999999999


Q ss_pred             CC---------cceeeeccCCCccCcc-------cccCCCCCCC
Q 035643          132 KQ---------VEVFYMDFDRNNMDNN-------IFYGCGLSGY  159 (159)
Q Consensus       132 ~~---------~~~~~~ll~~~~~~~~-------~~~~~g~~~~  159 (159)
                      ++         .+++++|++.| .+++       ..+..|+||+
T Consensus       195 ~~~~~~~~~~~~~~v~~Ll~~g-a~~n~~~~~~~~~d~~g~TpL  237 (273)
T 2pnn_A          195 ADNTVDNTKFVTSMYNEILILG-AKLHPTLKLEEITNRKGLTPL  237 (273)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHH-HHHCTTCCGGGCCCTTSCCHH
T ss_pred             cCcchhHHHHHHHHHHHHHHhh-hhcccccccccccCCCCCCHH
Confidence            88         78999999984 4443       5788888874

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=3.2e-29  Score=163.86  Aligned_cols=122  Identities=16%  Similarity=0.197  Sum_probs=104.7

Q ss_pred             ccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhh
Q 035643            2 ILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALIL   81 (159)
Q Consensus         2 ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~   81 (159)
                      +|++.|++++..|..|.||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+..|+.+++++|++.+.......
T Consensus        39 ~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~  117 (229)
T 2vge_A           39 QAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV-NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATT  117 (229)
T ss_dssp             HHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCC
T ss_pred             HHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccc
Confidence            577889999999999999999999999999999999999988 6899999999999999999999999999665554444


Q ss_pred             ccCCCCchhhh--hhcCChhHHHHHHhhcCCccccccccCCCCCHHHH
Q 035643           82 MERGVTILHAC--VNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHL  127 (159)
Q Consensus        82 ~~~~~t~l~~a--~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~  127 (159)
                      +..|.||||+|  +..++.+++++|++.|++   ++.+|..+.||++.
T Consensus       118 ~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~---~~~~~~~~~~~l~~  162 (229)
T 2vge_A          118 LSDGATAFEKCDPYREGYADCATYLADVEQS---MGLMNSGAVYALWD  162 (229)
T ss_dssp             SSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH---TTTSGGGEEEESSC
T ss_pred             CCCCCCHHHHHHHHhcChHHHHHHHHHcCCC---cccccCCchHHHHH
Confidence            46899999999  999999999999998776   44444444444443

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.95  E-value=1.3e-28  Score=160.13  Aligned_cols=138  Identities=16%  Similarity=0.130  Sum_probs=115.4

Q ss_pred             ccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchh
Q 035643           11 GELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILH   90 (159)
Q Consensus        11 ~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~   90 (159)
                      +..+..|.||||+|+..|+.++++.|++.+.++ +.++..|.||||+|+..|+.+++++|++..+......+..|.||||
T Consensus        67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~  145 (222)
T 3ehr_A           67 AEQAESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALH  145 (222)
T ss_dssp             HHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHH
T ss_pred             cccccccccccccccccCcHHHHHHHHhCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHH
Confidence            445667899999999999999999999999987 5889999999999999999999999999646667778889999999


Q ss_pred             hhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccC
Q 035643           91 ACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYG  153 (159)
Q Consensus        91 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~  153 (159)
                      +|+..++.+++++|++.|++   ++.+|..|.||+++|+..+..++++.+++.+. .....+.
T Consensus       146 ~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~-~~~~~~~  204 (222)
T 3ehr_A          146 AAAWKGYADIVQLLLAKGAR---TDLRNIEKKLAFDMATNAACASLLKKKQGTDA-VRTLSNA  204 (222)
T ss_dssp             HHHHHTCHHHHHHHHHHTCC---SCCCCTTSCCHHHHCCSHHHHHHHC---------------
T ss_pred             HHHHcCCHHHHHHHHHcCCC---CccccCCCCCHHHHhcchhHHHHHHHHhccch-hhhccch
Confidence            99999999999999999999   89999999999999999999999999999854 4444433

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.95  E-value=8.4e-28  Score=165.07  Aligned_cols=155  Identities=23%  Similarity=0.238  Sum_probs=83.3

Q ss_pred             CccccCCCccccccCC-CCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhh
Q 035643            1 EILRRKPEQAGELDSR-KASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAAL   79 (159)
Q Consensus         1 ~ll~~~~~~~~~~~~~-g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~   79 (159)
                      |+|+++|+++|.++.. |+||||+|+..|+.+++++|+++++++ +.++..+.++++.++..+...+...++.. .....
T Consensus        42 ~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  119 (337)
T 4g8k_A           42 QQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFILAAIAGSVKLLKLFLSK-GADVN  119 (337)
T ss_dssp             HHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTT
T ss_pred             HHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCch-hhhccCCCchhHHHHhcccchhhHHhhhc-cchhh
Confidence            3577888888887754 888888888888888888888887765 34444444444444444444444433331 12222


Q ss_pred             hhccCCCCchhhhhhcCChhHHHHHHhhcCCccc-------cccccCCCCCHHHHHHHhCCcceeeeccCCCccCccccc
Q 035643           80 ILMERGVTILHACVNYNQLESLRLLVEIRNDHEF-------VNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFY  152 (159)
Q Consensus        80 ~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~-------~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~  152 (159)
                      ..+..|.||+++|+..++.++++++++.|++...       ....+..|.||||+|+..|+.+++++|+++.+.+++..+
T Consensus       120 ~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d  199 (337)
T 4g8k_A          120 ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACD  199 (337)
T ss_dssp             CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCC
T ss_pred             hhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccC
Confidence            3344455555555555555555555555444110       011223345555555555555555555544444444444


Q ss_pred             CCCCC
Q 035643          153 GCGLS  157 (159)
Q Consensus       153 ~~g~~  157 (159)
                      ..|.|
T Consensus       200 ~~g~t  204 (337)
T 4g8k_A          200 NMGRN  204 (337)
T ss_dssp             TTSCC
T ss_pred             CCCCc
Confidence            44443

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.94  E-value=2.4e-27  Score=155.32  Aligned_cols=145  Identities=17%  Similarity=0.186  Sum_probs=131.2

Q ss_pred             cccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCch
Q 035643           10 AGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTIL   89 (159)
Q Consensus        10 ~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l   89 (159)
                      ++..|..|.+||+.|+..|+.++++.|++.+.++ +..+..|.||||+|+..++.+++++|++.+.......+..|.|||
T Consensus         2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L   80 (240)
T 3eu9_A            2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDV-RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPL   80 (240)
T ss_dssp             CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHH
T ss_pred             ccccccccchHHHHHHHcCChHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChh
Confidence            4567889999999999999999999999999887 578999999999999999999999999977666656666699999


Q ss_pred             hhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643           90 HACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus        90 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      |+|+..++.+++++|++.+++   ++.++..|.||||+|+..|+.+++++|+++ +.+++..+..|.||+
T Consensus        81 ~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~g~t~l  146 (240)
T 3eu9_A           81 HWATRQGHLSMVVQLMKYGAD---PSLIDGEGCSCIHLAAQFGHTSIVAYLIAK-GQDVDMMDQNGMTPL  146 (240)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCC---CcccCCCCCCHHHHHHHcCHHHHHHHHHhc-CCCccccCCCCCcHH
Confidence            999999999999999999999   888999999999999999999999999998 567778888887763

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.94  E-value=5e-27  Score=161.25  Aligned_cols=153  Identities=22%  Similarity=0.173  Sum_probs=91.0

Q ss_pred             cccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccce---------ecCCCCCcHHHHHHHhCCHHHHHHHHhc
Q 035643            3 LRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCF---------ARDIDGKNPLHIAAIRGNVNVLKELVKV   73 (159)
Q Consensus         3 l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~---------~~~~~~~~~l~~a~~~~~~~~~~~l~~~   73 (159)
                      +...+.+++..|..|.||||+|+..|+.++++.+++.++++..         ..+..|.||||+|+..|+.+++++|++.
T Consensus       111 ~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~  190 (337)
T 4g8k_A          111 FLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE  190 (337)
T ss_dssp             HHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             hhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhc
Confidence            4456777888888888999999998999999888887776521         2344578899999988888888888864


Q ss_pred             CchhhhhhccCCCCchhhhhhcCC----hhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcc
Q 035643           74 RPQAALILMERGVTILHACVNYNQ----LESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNN  149 (159)
Q Consensus        74 ~~~~~~~~~~~~~t~l~~a~~~~~----~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~  149 (159)
                      .+......+..|.++++.++..+.    ..++++|++.|++   ++.+|..|.||||+|+..|..+++++|+...+.+++
T Consensus       191 ~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad---~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn  267 (337)
T 4g8k_A          191 MGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD---VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN  267 (337)
T ss_dssp             SCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCC---TTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTT
T ss_pred             cCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCccc
Confidence            333333344444444444333221    1233444444444   444444444444444444444444444444444444


Q ss_pred             cccCCCCCC
Q 035643          150 IFYGCGLSG  158 (159)
Q Consensus       150 ~~~~~g~~~  158 (159)
                      ..+..|+||
T Consensus       268 ~~d~~G~Tp  276 (337)
T 4g8k_A          268 DTDSDGKTA  276 (337)
T ss_dssp             CBCTTSCBH
T ss_pred             CcCCCCCCH
Confidence            444444443

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.94  E-value=4.5e-27  Score=158.84  Aligned_cols=141  Identities=24%  Similarity=0.266  Sum_probs=124.2

Q ss_pred             ccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhh
Q 035643           13 LDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHAC   92 (159)
Q Consensus        13 ~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a   92 (159)
                      .+..|.||||+|+..|+.++++.|++.+.++ +..+..|.||||+|+..|+.+++++|++. +......+..|.||||+|
T Consensus        36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~tpL~~A  113 (299)
T 1s70_B           36 VKFDDGAVFLAACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDNVDMVKFLVEN-GANINQPDNEGWIPLHAA  113 (299)
T ss_dssp             CEECHHHHHHHHHHHTCHHHHHHHHHHCCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHH
T ss_pred             cccCCccHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHH
Confidence            3456789999999999999999999999987 67899999999999999999999999994 455566788899999999


Q ss_pred             hhcCChhHHHHHHhhcCCccccccc-------------------------------------------------------
Q 035643           93 VNYNQLESLRLLVEIRNDHEFVNSK-------------------------------------------------------  117 (159)
Q Consensus        93 ~~~~~~~~~~~Ll~~~~~~~~~~~~-------------------------------------------------------  117 (159)
                      +..|+.+++++|++.|++   ++..                                                       
T Consensus       114 ~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  190 (299)
T 1s70_B          114 ASCGYLDIAEYLISQGAH---VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHI  190 (299)
T ss_dssp             HHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHcCCHHHHHHHHhCCCC---CCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCc
Confidence            999999999999998877   3322                                                       


Q ss_pred             -----cCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643          118 -----DDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus       118 -----~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                           +..|.||||+|+..|+.+++++|++. +.+++..+..|.||+
T Consensus       191 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~d~~~~d~~g~tpL  236 (299)
T 1s70_B          191 NDVRHAKSGGTALHVAAAKGYTEVLKLLIQA-RYDVNIKDYDGWTPL  236 (299)
T ss_dssp             CCCCCTTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCCCTTCCCHH
T ss_pred             chhhhcCCCCCHHHHHHHCCcHHHHHHHHHc-CCCCCCcCCCCCcHH
Confidence                 34578999999999999999999998 678889999999874

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=8.2e-28  Score=158.10  Aligned_cols=138  Identities=15%  Similarity=0.142  Sum_probs=93.3

Q ss_pred             cCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhh
Q 035643           14 DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACV   93 (159)
Q Consensus        14 ~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~   93 (159)
                      +..|.||||.|+..++.+.++.+++++.++.  .+..+.||||+|+..|+.+++++|++.+. ..+..+..|.||||+|+
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~--~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~d~~g~t~L~~A~   78 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVK--FNPLPLALLLDSSLEGEFDLVQRIIYEVD-DPSLPNDEGITALHNAV   78 (239)
T ss_dssp             -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTS-SCCCCCTTSCCHHHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCcc--cCchhhHHHHHHHHcCCHHHHHHHHHcCC-CCCCcCCCCCCHHHHHH
Confidence            4679999999999999999999999999873  34778999999999999999999999554 56667889999999999


Q ss_pred             hcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCC-CC
Q 035643           94 NYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGL-SG  158 (159)
Q Consensus        94 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~-~~  158 (159)
                      ..|+.+++++|++.|++   ++.+|..|.||||+|+..|+.+++++|+++ +.+++..+..|. ||
T Consensus        79 ~~g~~~~v~~Ll~~ga~---~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~~~~t~  140 (239)
T 1ycs_B           79 CAGHTEIVKFLVQFGVN---VNAADSDGWTPLHCAASCNNVQVCKFLVES-GAAVFAMTYSDMQTA  140 (239)
T ss_dssp             HHTCHHHHHHHHHHTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCSSSCCCH
T ss_pred             HcCCHHHHHHHHHcCCC---CCccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCcceecCCCCcch
Confidence            99999999999999999   899999999999999999999999999999 567777776665 65

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.94  E-value=1.7e-27  Score=151.11  Aligned_cols=129  Identities=15%  Similarity=0.107  Sum_probs=113.1

Q ss_pred             ccccc-CCCCCHHHHHHHhCCh----HHHHHHhhcCCccceecCCCCCcHHHHHHHhCC------HHHHHHHHhcCchhh
Q 035643           10 AGELD-SRKASPLHLAAAKGYL----DIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGN------VNVLKELVKVRPQAA   78 (159)
Q Consensus        10 ~~~~~-~~g~t~l~~a~~~~~~----~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~------~~~~~~l~~~~~~~~   78 (159)
                      ++..+ ..|.||||+|+.+++.    +++++|++.|+++ +.++..|+||||+|+..++      .+++++|++ .+...
T Consensus        30 ~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~-~Gadi  107 (186)
T 3t8k_A           30 YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLE-KGADI  107 (186)
T ss_dssp             SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHH-TTCCS
T ss_pred             cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHH-CCCCC
Confidence            45555 7799999999999975    5899999999998 6899999999999999887      578999999 45666


Q ss_pred             hhhccCCC-CchhhhhhcCC-----hhHHHHHHh-hcCCccccccccCCCCCHHHHHHHhCCcceeeeccCC
Q 035643           79 LILMERGV-TILHACVNYNQ-----LESLRLLVE-IRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDR  143 (159)
Q Consensus        79 ~~~~~~~~-t~l~~a~~~~~-----~~~~~~Ll~-~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~  143 (159)
                      +.++..|. ||||+|+..+.     .+++++|++ .|++   ++.+|..|.||||+|+..++.+++++|.+.
T Consensus       108 n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad---~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~  176 (186)
T 3t8k_A          108 TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ---LLIKDKWGLTALEFVKRCQKPIALKMMEDY  176 (186)
T ss_dssp             SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC---TTCCCTTSCCHHHHHHTTTCHHHHHHHHHH
T ss_pred             CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCC---CcccCCCCCCHHHHHHHcCCHHHHHHHHHH
Confidence            67788899 99999999543     458999999 9999   999999999999999999999999999876

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.94  E-value=3.5e-27  Score=140.28  Aligned_cols=114  Identities=22%  Similarity=0.203  Sum_probs=102.1

Q ss_pred             cCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhh
Q 035643           14 DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACV   93 (159)
Q Consensus        14 ~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~   93 (159)
                      +..|.||||+|+..|+.++++.|++.+.++ +.++..|.||||+|+..++.+++++|++. +......+..|.||||+|+
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~tpL~~A~   81 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLK-GADINAPDKHHITPLLSAV   81 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTSCCHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCHHHHHH
Confidence            567889999999999999999999999987 68899999999999999999999999995 4556677889999999999


Q ss_pred             hcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhC
Q 035643           94 NYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEK  132 (159)
Q Consensus        94 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~  132 (159)
                      ..++.+++++|++.|++   ++.+|..|.||+|+|...+
T Consensus        82 ~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~  117 (123)
T 3aaa_C           82 YEGHVSCVKLLLSKGAD---KTVKGPDGLTAFEATDNQA  117 (123)
T ss_dssp             HHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHCCCHH
T ss_pred             HcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHhCCHH
Confidence            99999999999999999   8999999999999995443

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.94  E-value=4.7e-27  Score=148.73  Aligned_cols=126  Identities=24%  Similarity=0.241  Sum_probs=110.7

Q ss_pred             ccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhh
Q 035643           13 LDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHAC   92 (159)
Q Consensus        13 ~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a   92 (159)
                      .+..|.||||+|+..|+.++++.|++ +.++ +.++..|.||||+|+..++.+++++|++.+.......+..|.||||+|
T Consensus        40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A  117 (183)
T 3deo_A           40 VVSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA  117 (183)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHH
Confidence            35688999999999999999999999 7777 689999999999999999999999999965444433338899999999


Q ss_pred             hhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCC
Q 035643           93 VNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDR  143 (159)
Q Consensus        93 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~  143 (159)
                      +..++.+++++|++.|++   ++.+|..|.||+|+|+..++.+.+..++..
T Consensus       118 ~~~~~~~~v~~Ll~~ga~---~~~~d~~g~tpl~~A~~~~~~~~~~~~l~~  165 (183)
T 3deo_A          118 AGYVRPEVVEALVELGAD---IEVEDERGLTALELAREILKTTPKGNPMQF  165 (183)
T ss_dssp             HHTTCHHHHHHHHHHTCC---TTCCCTTSCCHHHHHHHHHHTCCCCSHHHH
T ss_pred             HhcCcHHHHHHHHHcCCC---CcCCCCCCCCHHHHHHHhccCcccccHHHH
Confidence            999999999999999999   899999999999999998777766665543

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.93  E-value=8.7e-27  Score=159.62  Aligned_cols=129  Identities=14%  Similarity=0.019  Sum_probs=111.1

Q ss_pred             CccccCCCccccccCCCCCHHHHHHHhCC---hHHHHHHhhcCCccceecCCCCCcHHHHHHH----hCCHHHHHHHHhc
Q 035643            1 EILRRKPEQAGELDSRKASPLHLAAAKGY---LDIVLKLVSVNPEMCFARDIDGKNPLHIAAI----RGNVNVLKELVKV   73 (159)
Q Consensus         1 ~ll~~~~~~~~~~~~~g~t~l~~a~~~~~---~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~----~~~~~~~~~l~~~   73 (159)
                      ++|+++|++++.+|..|.||||+|+..|+   .+.++.|++.+....+.++..|.||||+|+.    .++.+++++|++.
T Consensus       148 ~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~  227 (327)
T 1sw6_A          148 KHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDI  227 (327)
T ss_dssp             HHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHH
Confidence            46889999999999999999999999998   7788888877633336899999999999999    8999999999874


Q ss_pred             Cch--------------------------------------------hhhhhccCCCCchhhhhhcCChhHHHHHHhhcC
Q 035643           74 RPQ--------------------------------------------AALILMERGVTILHACVNYNQLESLRLLVEIRN  109 (159)
Q Consensus        74 ~~~--------------------------------------------~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~  109 (159)
                      ...                                            ....++..|.||||+|+..++.+++++|++.|+
T Consensus       228 ~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Ga  307 (327)
T 1sw6_A          228 LMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGA  307 (327)
T ss_dssp             HHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTC
T ss_pred             HHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            210                                            245567789999999999999999999999999


Q ss_pred             CccccccccCCCCCHHHHHHHhC
Q 035643          110 DHEFVNSKDDNGSTILHLAVLEK  132 (159)
Q Consensus       110 ~~~~~~~~~~~~~tpl~~a~~~~  132 (159)
                      +   ++.+|..|+||||+|+..|
T Consensus       308 d---~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          308 D---PFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             C---TTCCCTTSCCGGGGTCC--
T ss_pred             C---CcccCCCCCCHHHHHHhcC
Confidence            9   8999999999999998654

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.92  E-value=3.4e-26  Score=150.84  Aligned_cols=124  Identities=25%  Similarity=0.260  Sum_probs=107.6

Q ss_pred             cCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhh
Q 035643           14 DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACV   93 (159)
Q Consensus        14 ~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~   93 (159)
                      +..|.||||+|+..|+.++++.|++ +.++ +.++..|.||||+|+..|+.+++++|++.+.......+..|.||||+|+
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~  119 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA  119 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence            4578999999999999999999999 7777 6899999999999999999999999999655444443478999999999


Q ss_pred             hcCChhHHHHHHhhcCCccccccccCCCCCHHHHHH----------------HhCCcceeeeccC
Q 035643           94 NYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV----------------LEKQVEVFYMDFD  142 (159)
Q Consensus        94 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~----------------~~~~~~~~~~ll~  142 (159)
                      ..++.+++++|++.|++   ++.+|..|.||||+|+                ..|..+++++|++
T Consensus       120 ~~g~~~~v~~Ll~~ga~---~~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~  181 (244)
T 3ui2_A          120 GYVRPEVVEALVELGAD---IEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEG  181 (244)
T ss_dssp             HTTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHCCCC---CCCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHH
Confidence            99999999999999999   8899999999999998                4455666666654

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.92  E-value=4.6e-26  Score=140.72  Aligned_cols=123  Identities=14%  Similarity=0.078  Sum_probs=96.4

Q ss_pred             CccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCc-HHHHHHHhCCHHHHHHHHhcCchhhh
Q 035643            1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKN-PLHIAAIRGNVNVLKELVKVRPQAAL   79 (159)
Q Consensus         1 ~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~-~l~~a~~~~~~~~~~~l~~~~~~~~~   79 (159)
                      ++|+++|++++..|..|.||||+|+ .|+.+++++|++.+.++ +.++..|.| |||+|+..++.+++++|++.+ ....
T Consensus        29 ~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~g-a~~~  105 (156)
T 1bi7_B           29 RALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDAAREGFLDTLVVLHRAG-ARLD  105 (156)
T ss_dssp             HHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHHHHTCHHHHHHHHHHT-CCSS
T ss_pred             HHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHHCCCHHHHHHHHHcC-CCCc
Confidence            3578899999999999999999985 89999999999999988 689999999 999999999999999999954 4555


Q ss_pred             hhccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHH
Q 035643           80 ILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV  129 (159)
Q Consensus        80 ~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~  129 (159)
                      .++..|.||||+|+..++.+++++|++.|++   ++.++..|.||.+-+.
T Consensus       106 ~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~~~~~~  152 (156)
T 1bi7_B          106 VRDAWGRLPVDLAEELGHRDVARYLRAAAGG---TRGSNHARIDAAEGPS  152 (156)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------------------
T ss_pred             ccCCCCCCHHHHHHHhCHHHHHHHHHHcCCC---CCccCcCcCcccccCC
Confidence            6788899999999999999999999999999   8999999999987443

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.91  E-value=2.9e-26  Score=145.42  Aligned_cols=137  Identities=14%  Similarity=0.082  Sum_probs=117.2

Q ss_pred             CCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCH----HHHHHHHhcCchhhhhhccCCCCchhhh
Q 035643           17 KASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNV----NVLKELVKVRPQAALILMERGVTILHAC   92 (159)
Q Consensus        17 g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~----~~~~~l~~~~~~~~~~~~~~~~t~l~~a   92 (159)
                      ++++|+.|+..|+.+.++.++..+.+.  ..+..|+||||+|+..++.    +++++|++. +...+.++..|.||||+|
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~-Gadvn~~d~~g~TpLh~a   82 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINK-GADIKSRTKEGTTLFFPL   82 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHT-TCCSSCCCTTCCCTHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHC-CCCCCCCCCCCCcHHHHH
Confidence            578999999999999999999877543  2337799999999999875    589999994 456667788999999999


Q ss_pred             hhcCC------hhHHHHHHhhcCCccccccccCCCC-CHHHHHHHhCC-----cceeeeccCCCccCcccccCCCCCCC
Q 035643           93 VNYNQ------LESLRLLVEIRNDHEFVNSKDDNGS-TILHLAVLEKQ-----VEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus        93 ~~~~~------~~~~~~Ll~~~~~~~~~~~~~~~~~-tpl~~a~~~~~-----~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      +..+.      .+++++|++.|++   ++.+|..|. ||||+|+..+.     .+++++|++..+.+++..+..|+||+
T Consensus        83 ~~~~~~~~~~~~~iv~~Ll~~Gad---in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL  158 (186)
T 3t8k_A           83 FQGGGNDITGTTELCKIFLEKGAD---ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTAL  158 (186)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCC---SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHH
T ss_pred             HHcCCcchhhHHHHHHHHHHCCCC---CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHH
Confidence            99886      4689999999999   999999999 99999998543     45889999944889999999999974

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.91  E-value=9.7e-25  Score=146.37  Aligned_cols=130  Identities=18%  Similarity=0.148  Sum_probs=115.5

Q ss_pred             CCCHHHHHHHhCChHHHHHHhhcCCccc-----eecCCCCCcHHHHHHHh---CCHHHHHHHHhcCchhhhhhccCCCCc
Q 035643           17 KASPLHLAAAKGYLDIVLKLVSVNPEMC-----FARDIDGKNPLHIAAIR---GNVNVLKELVKVRPQAALILMERGVTI   88 (159)
Q Consensus        17 g~t~l~~a~~~~~~~~~~~ll~~~~~~~-----~~~~~~~~~~l~~a~~~---~~~~~~~~l~~~~~~~~~~~~~~~~t~   88 (159)
                      ..++|+.|+..++.+.++.+++.+.+..     +..+..|.||||+|+..   ++.+++++|++.+ ...+.++..|.||
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~g-a~in~~d~~g~Tp  208 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS-GNLDKQTGKGSTA  208 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHC-SCTTCCCTTCCCH
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCC-CCccccCCCCCCH
Confidence            4578999999999999999999988753     33478899999999999   8999999999954 5556678899999


Q ss_pred             hhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCccc
Q 035643           89 LHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNI  150 (159)
Q Consensus        89 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~  150 (159)
                      ||+|+..|+.+++++|++.|++   ++.+|..|.||||+|+..|+.+++++|+++++...+.
T Consensus       209 Lh~A~~~g~~~~v~~Ll~~gad---~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~  267 (278)
T 1dcq_A          209 LHYCCLTDNAECLKLLLRGKAS---IEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNS  267 (278)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCCCS
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC---CCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc
Confidence            9999999999999999999999   8999999999999999999999999999987654443

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.91  E-value=4e-24  Score=129.14  Aligned_cols=106  Identities=25%  Similarity=0.311  Sum_probs=96.6

Q ss_pred             CccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhh
Q 035643            1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALI   80 (159)
Q Consensus         1 ~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~   80 (159)
                      ++|++.|++++..|..|.||||+|+..++.++++.|++.++++ +.++..|.||||+|+..++.+++++|++. +.....
T Consensus        31 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~  108 (136)
T 2jab_A           31 RILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLAAFIGHLEIAEVLLKH-GADVNA  108 (136)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTC
T ss_pred             HHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCcC
Confidence            3578899999999999999999999999999999999999987 57899999999999999999999999995 455566


Q ss_pred             hccCCCCchhhhhhcCChhHHHHHHhhc
Q 035643           81 LMERGVTILHACVNYNQLESLRLLVEIR  108 (159)
Q Consensus        81 ~~~~~~t~l~~a~~~~~~~~~~~Ll~~~  108 (159)
                      .+..|.|||++|+..++.+++++|++.|
T Consensus       109 ~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A          109 QDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             cCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            7888999999999999999999999864

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.91  E-value=9.5e-25  Score=147.91  Aligned_cols=125  Identities=20%  Similarity=0.173  Sum_probs=112.6

Q ss_pred             CCCHHHHHHHhCChHHHHHHhhcCCcccee-----cCCCCCcHHHHHHHh---CCHHHHHHHHhcCchhhhhhccCCCCc
Q 035643           17 KASPLHLAAAKGYLDIVLKLVSVNPEMCFA-----RDIDGKNPLHIAAIR---GNVNVLKELVKVRPQAALILMERGVTI   88 (159)
Q Consensus        17 g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~-----~~~~~~~~l~~a~~~---~~~~~~~~l~~~~~~~~~~~~~~~~t~   88 (159)
                      +.++|+.|+..|+.+.++.+++.+.++...     .+..|.||||+|+..   ++.+++++|++.+ ...+..+..|.||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~g-advn~~d~~G~Tp  229 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNG-GHLDAKAADGNTA  229 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHS-SCTTCCCTTCCCH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcC-CCCCCCCCCCCCH
Confidence            456799999999999999999999887422     688999999999997   8999999999964 4556678899999


Q ss_pred             hhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCc
Q 035643           89 LHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNN  145 (159)
Q Consensus        89 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~  145 (159)
                      ||+|+..++.+++++|++.|++   ++.+|..|.||||+|+..++.+++++|++.+.
T Consensus       230 Lh~A~~~g~~~~v~~Ll~~gad---~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga  283 (301)
T 2b0o_E          230 LHYAALYNQPDCLKLLLKGRAL---VGTVNEAGETALDIARKKHHKECEELLEQAQA  283 (301)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC---CSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcC
Confidence            9999999999999999999999   89999999999999999999999999998854

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.91  E-value=4.6e-24  Score=125.27  Aligned_cols=110  Identities=29%  Similarity=0.294  Sum_probs=94.9

Q ss_pred             ccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchh
Q 035643           11 GELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILH   90 (159)
Q Consensus        11 ~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~   90 (159)
                      .++|.+|.||||+|+..|+.++++.|++.+.++ +.++..|.||||+|+..++.+++++|++. +......+..|.|||+
T Consensus         3 ~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~d~~g~tpl~   80 (115)
T 2l6b_A            3 MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAK-GADVNARSKDGNTPEH   80 (115)
T ss_dssp             -CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTT-TCCTTCCCTTCCCTTH
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCcccCCCCCCHHH
Confidence            357889999999999999999999999999887 67889999999999999999999999985 4455567788999999


Q ss_pred             hhhhcCChhHHHHHHhhcCCccccccccCCCCCHH
Q 035643           91 ACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTIL  125 (159)
Q Consensus        91 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl  125 (159)
                      +|+..++.+++++|++.|++   ++.++..+.+|-
T Consensus        81 ~A~~~~~~~~~~~Ll~~ga~---~n~~~~~~~~~~  112 (115)
T 2l6b_A           81 LAKKNGHHEIVKLLDAKGAD---VNARSWGSSHHH  112 (115)
T ss_dssp             HHHTTTCHHHHHHHHTTSSS---HHHHSCCCC---
T ss_pred             HHHHCCCHHHHHHHHHcCCC---CCcCCccccccc
Confidence            99999999999999999999   888988888874

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.91  E-value=8.5e-25  Score=132.09  Aligned_cols=107  Identities=17%  Similarity=0.126  Sum_probs=98.0

Q ss_pred             CccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCC-CCcHHHHHHHhCCHHHHHHHHhcCchhhh
Q 035643            1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDID-GKNPLHIAAIRGNVNVLKELVKVRPQAAL   79 (159)
Q Consensus         1 ~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~-~~~~l~~a~~~~~~~~~~~l~~~~~~~~~   79 (159)
                      ++|++.|++++.+|..|.||||+|+. ++.+++++|++.+.++ +.++.. |.||||+|+..++.+++++|++.+ ....
T Consensus        29 ~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~  105 (136)
T 1d9s_A           29 RQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPATLTRPVHDAAREGFLDTLVVLHRAG-ARLD  105 (136)
T ss_dssp             HHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTTTTBCHHHHHHHHTCHHHHHHHHHTC-CCCC
T ss_pred             HHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCC
Confidence            35788999999999999999999999 9999999999999988 578888 999999999999999999999954 5556


Q ss_pred             hhccCCCCchhhhhhcCChhHHHHHHhhcCC
Q 035643           80 ILMERGVTILHACVNYNQLESLRLLVEIRND  110 (159)
Q Consensus        80 ~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~  110 (159)
                      ..+..|.|||++|+..++.+++++|++.|++
T Consensus       106 ~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A          106 VCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             CCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            6788999999999999999999999998875

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.90  E-value=1.6e-23  Score=118.55  Aligned_cols=93  Identities=33%  Similarity=0.498  Sum_probs=73.1

Q ss_pred             CCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhc
Q 035643           16 RKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNY   95 (159)
Q Consensus        16 ~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~   95 (159)
                      +|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..++.+++++|++. +.....++..|.||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~t~l~~A~~~   78 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARN   78 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHc
Confidence            4788888888888888888888888877 57888888888888888888888888884 344556677788888888888


Q ss_pred             CChhHHHHHHhhcCC
Q 035643           96 NQLESLRLLVEIRND  110 (159)
Q Consensus        96 ~~~~~~~~Ll~~~~~  110 (159)
                      ++.+++++|++.|++
T Consensus        79 ~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           79 GHLEVVKLLLEAGAY   93 (93)
T ss_dssp             TCHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHcCCC
Confidence            888888888887653

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.90  E-value=3.9e-24  Score=153.75  Aligned_cols=123  Identities=20%  Similarity=0.178  Sum_probs=112.5

Q ss_pred             CCHHHHHHHhCChHHHHHHhhcCCccceec------CCCCCcHHHHHHH---hCCHHHHHHHHhcCchhhhhhccCCCCc
Q 035643           18 ASPLHLAAAKGYLDIVLKLVSVNPEMCFAR------DIDGKNPLHIAAI---RGNVNVLKELVKVRPQAALILMERGVTI   88 (159)
Q Consensus        18 ~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~------~~~~~~~l~~a~~---~~~~~~~~~l~~~~~~~~~~~~~~~~t~   88 (159)
                      .+.||.|+..|+.+.++.|++.++++ +..      +..|.||||+|+.   .|+.+++++|++.+ ...+..+..|.||
T Consensus       133 ~~~L~~A~~~g~~~~v~~ll~~g~~~-n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~g-a~vn~~d~~g~Tp  210 (497)
T 3lvq_E          133 PQRLWTAICNRDLLSVLEAFANGQDF-GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNG-GHLDAKAADGNTA  210 (497)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCS-SSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHS-CCTTCCCSSSCCH
T ss_pred             HHHHHHHHhccCHHHHHHHHhhcccc-cCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcC-CCCCccCCCCCcH
Confidence            36799999999999999999999887 345      7889999999977   89999999999955 5566778899999


Q ss_pred             hhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCc
Q 035643           89 LHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNN  145 (159)
Q Consensus        89 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~  145 (159)
                      ||+|+..|+.+++++|++.|++   ++.+|..|.||||+|+..|+.+++++|+++|+
T Consensus       211 Lh~A~~~g~~~~v~~Ll~~ga~---~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga  264 (497)
T 3lvq_E          211 LHYAALYNQPDCLKLLLKGRAL---VGTVNEAGETALDIARKKHHKECEELLEQAQA  264 (497)
T ss_dssp             HHHHTTTTCHHHHHHHHHTCCC---CSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            9999999999999999999999   89999999999999999999999999999955

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.90  E-value=1.6e-24  Score=150.17  Aligned_cols=125  Identities=14%  Similarity=0.096  Sum_probs=113.8

Q ss_pred             CCCCCHHHHHHHh-CChHHHHHHhhcCCccceecC--CCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhh
Q 035643           15 SRKASPLHLAAAK-GYLDIVLKLVSVNPEMCFARD--IDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHA   91 (159)
Q Consensus        15 ~~g~t~l~~a~~~-~~~~~~~~ll~~~~~~~~~~~--~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~   91 (159)
                      ..+.|+||.|+.. ++.++++.|++.+.++ +..+  ..|.||||+|+..++.+++++|++. +...+..+..|.||||+
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~-Gadvn~~d~~G~TpLh~  274 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQN-GANVNQADSAGRGPLHH  274 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHH
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCCCCCCCCHHHH
Confidence            3456799999999 9999999999999988 4666  8899999999999999999999995 45566778899999999


Q ss_pred             hhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCC
Q 035643           92 CVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRN  144 (159)
Q Consensus        92 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~  144 (159)
                      |+..++.+++++|++.|++   ++.+|..|.||||+|+..++.+++++|+..+
T Consensus       275 A~~~g~~~~v~~LL~~Gad---~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~  324 (368)
T 3jue_A          275 ATILGHTGLACLFLKRGAD---LGARDSEGRDPLTIAMETANADIVTLLRLAK  324 (368)
T ss_dssp             HHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHcCcHHHHHHHHHCcCC---CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            9999999999999999999   8999999999999999999999999998764

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.90  E-value=1.7e-24  Score=146.64  Aligned_cols=121  Identities=22%  Similarity=0.173  Sum_probs=102.8

Q ss_pred             ccccCCCcccc------ccCCCCCHHHHHHHh---CChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHh
Q 035643            2 ILRRKPEQAGE------LDSRKASPLHLAAAK---GYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK   72 (159)
Q Consensus         2 ll~~~~~~~~~------~~~~g~t~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~   72 (159)
                      .|+..|++++.      .+..|.||||+|+..   ++.+++++|++.++++ +.+|..|.||||+|+..|+.+++++|++
T Consensus       169 ~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~  247 (301)
T 2b0o_E          169 EAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTALHYAALYNQPDCLKLLLK  247 (301)
T ss_dssp             HHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            35688999988      689999999999997   8999999999999988 6899999999999999999999999999


Q ss_pred             cCchhhhhhccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCC
Q 035643           73 VRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQ  133 (159)
Q Consensus        73 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~  133 (159)
                      . +.....++..|.|||++|+..++.+++++|++.+++         .|.||||+|+..|.
T Consensus       248 ~-gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~---------~g~tpLh~A~~~g~  298 (301)
T 2b0o_E          248 G-RALVGTVNEAGETALDIARKKHHKECEELLEQAQAG---------TFAFPLHVDYSWVI  298 (301)
T ss_dssp             T-TCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH---------TTSSCCC-------
T ss_pred             c-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC---------CCCChhHHHHhcCC
Confidence            4 455667788999999999999999999999997755         47899999998775

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.90  E-value=3.7e-24  Score=129.36  Aligned_cols=109  Identities=23%  Similarity=0.288  Sum_probs=100.3

Q ss_pred             ecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHH
Q 035643           46 ARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTIL  125 (159)
Q Consensus        46 ~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl  125 (159)
                      .++..|.||||+|+..++.+++++|++.+ ......+..|.||||+|+..++.+++++|++.+++   ++.+|..|.|||
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L   80 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNG-SDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL---VNTTGYQNDSPL   80 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCGGGCCHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc---ccCcCCCCCCHH
Confidence            57889999999999999999999999954 45556788899999999999999999999999999   899999999999


Q ss_pred             HHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643          126 HLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus       126 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      |+|+..++.+++++|++. +.+++..+..|.||+
T Consensus        81 ~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl  113 (137)
T 3c5r_A           81 HDAAKNGHVDIVKLLLSY-GASRNAVNIFGLRPV  113 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCGG
T ss_pred             HHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHH
Confidence            999999999999999998 678899999999985

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.90  E-value=2.6e-23  Score=123.57  Aligned_cols=107  Identities=31%  Similarity=0.455  Sum_probs=98.2

Q ss_pred             ccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhh
Q 035643            2 ILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALIL   81 (159)
Q Consensus         2 ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~   81 (159)
                      +|++.|.+++..+..|.||||+|+..++.+++++|++.+.++ +.++..|.||+|+|+..++.+++++|++. +......
T Consensus        20 ~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-g~~~~~~   97 (126)
T 1n0r_A           20 LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAK   97 (126)
T ss_dssp             HHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC
T ss_pred             HHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHHcChHHHHHHHHHc-CCCCccc
Confidence            567889999999999999999999999999999999999987 57899999999999999999999999995 4555567


Q ss_pred             ccCCCCchhhhhhcCChhHHHHHHhhcCC
Q 035643           82 MERGVTILHACVNYNQLESLRLLVEIRND  110 (159)
Q Consensus        82 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~  110 (159)
                      +..|.||+++|+..++.+++++|++.|++
T Consensus        98 ~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           98 DKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            88899999999999999999999998875

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.89  E-value=2.1e-23  Score=118.11  Aligned_cols=92  Identities=36%  Similarity=0.516  Sum_probs=83.8

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHH
Q 035643           50 DGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV  129 (159)
Q Consensus        50 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~  129 (159)
                      +|.||||+|+..++.+++++|++. +.....++..|.||||+|+..++.+++++|++.|++   ++.+|..|.||||+|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~t~l~~A~   76 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAA   76 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCccCCCCCCHHHHHH
Confidence            478999999999999999999995 455667788999999999999999999999999999   8999999999999999


Q ss_pred             HhCCcceeeeccCCCc
Q 035643          130 LEKQVEVFYMDFDRNN  145 (159)
Q Consensus       130 ~~~~~~~~~~ll~~~~  145 (159)
                      ..|+.+++++|++.|.
T Consensus        77 ~~~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           77 RNGHLEVVKLLLEAGA   92 (93)
T ss_dssp             HTTCHHHHHHHHHTTC
T ss_pred             HcCCHHHHHHHHHcCC
Confidence            9999999999998854

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.89  E-value=1.5e-23  Score=124.56  Aligned_cols=107  Identities=23%  Similarity=0.261  Sum_probs=95.9

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHH
Q 035643           48 DIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHL  127 (159)
Q Consensus        48 ~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~  127 (159)
                      +..|.+|||+|+..++.+++++|++.+ ......+..|.||||+|+..++.+++++|++.+++   ++.+|..|.||||+
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~d~~g~tpL~~   79 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKG-EDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD---INAPDKHHITPLLS   79 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTT-CCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC---TTCCCTTSCCHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcC-CCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCcCCCCCCCHHHH
Confidence            456789999999999999999999955 45566788899999999999999999999999999   89999999999999


Q ss_pred             HHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643          128 AVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus       128 a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      |+..++.+++++|+++ +.+++..+..|.||+
T Consensus        80 A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l  110 (123)
T 3aaa_C           80 AVYEGHVSCVKLLLSK-GADKTVKGPDGLTAF  110 (123)
T ss_dssp             HHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHH
T ss_pred             HHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHH
Confidence            9999999999999999 678889999999874

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.88  E-value=2e-23  Score=122.55  Aligned_cols=108  Identities=26%  Similarity=0.258  Sum_probs=97.6

Q ss_pred             ecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHH
Q 035643           46 ARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTIL  125 (159)
Q Consensus        46 ~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl  125 (159)
                      .+|..|.||||+|+..++.+++++|++.+ ......+..|.||||+|+..++.+++++|++.|++   ++.+|..|.|||
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~d~~g~tpl   79 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKG-ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD---VNARSKDGNTPE   79 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTT-CCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC---TTCCCTTCCCTT
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC---CcccCCCCCCHH
Confidence            57889999999999999999999999954 44556788899999999999999999999999999   899999999999


Q ss_pred             HHHHHhCCcceeeeccCCCccCcccccCCCCCC
Q 035643          126 HLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSG  158 (159)
Q Consensus       126 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~  158 (159)
                      |+|+..++.+++++|+++ +.+++..+..|.+|
T Consensus        80 ~~A~~~~~~~~~~~Ll~~-ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           80 HLAKKNGHHEIVKLLDAK-GADVNARSWGSSHH  111 (115)
T ss_dssp             HHHHTTTCHHHHHHHHTT-SSSHHHHSCCCC--
T ss_pred             HHHHHCCCHHHHHHHHHc-CCCCCcCCcccccc
Confidence            999999999999999998 67889888888876

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.88  E-value=3e-23  Score=131.18  Aligned_cols=119  Identities=19%  Similarity=0.162  Sum_probs=103.1

Q ss_pred             ccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecC-CCCCcHHHHHHHhCCHHHHHHHHhcCchhhhh
Q 035643            2 ILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARD-IDGKNPLHIAAIRGNVNVLKELVKVRPQAALI   80 (159)
Q Consensus         2 ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~   80 (159)
                      +|++ |++++..|..|.||||+|+..|+.+++++|++.++++. .++ ..|.||||+|+..++.+++++|++.+ .....
T Consensus        62 ~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~  138 (183)
T 3deo_A           62 QLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD-HRDMRGGLTALHMAAGYVRPEVVEALVELG-ADIEV  138 (183)
T ss_dssp             HHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCSSSSCCHHHHHHHTTCHHHHHHHHHHT-CCTTC
T ss_pred             HHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCCCHHHHHHhcCcHHHHHHHHHcC-CCCcC
Confidence            4566 99999999999999999999999999999999999884 565 88999999999999999999999965 55566


Q ss_pred             hccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCC
Q 035643           81 LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDR  143 (159)
Q Consensus        81 ~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~  143 (159)
                      ++..|.||||+|+..++                    ...+.+|+++|+..|..+++++|.++
T Consensus       139 ~d~~g~tpl~~A~~~~~--------------------~~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          139 EDERGLTALELAREILK--------------------TTPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             CCTTSCCHHHHHHHHHH--------------------TCCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCCCCHHHHHHHhcc--------------------CcccccHHHHHHHcCHHHHHHHHHHh
Confidence            78899999999986321                    13456899999999999999988765

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.87  E-value=2.7e-22  Score=139.03  Aligned_cols=129  Identities=17%  Similarity=0.095  Sum_probs=98.1

Q ss_pred             ccccCCCcccccc--CCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhh
Q 035643            2 ILRRKPEQAGELD--SRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAAL   79 (159)
Q Consensus         2 ll~~~~~~~~~~~--~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~   79 (159)
                      +|++.|++++..+  ..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..++.+++++|++. +....
T Consensus       218 ~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpLh~A~~~g~~~~v~~LL~~-Gad~~  295 (368)
T 3jue_A          218 DALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLHHATILGHTGLACLFLKR-GADLG  295 (368)
T ss_dssp             HHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTT
T ss_pred             HHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCcHHHHHHHHHC-cCCCC
Confidence            4778999999999  88999999999999999999999999998 68999999999999999999999999995 45566


Q ss_pred             hhccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhC
Q 035643           80 ILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEK  132 (159)
Q Consensus        80 ~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~  132 (159)
                      ..+..|.||||+|+..++.+++++|+..+.........+..+.|+++++....
T Consensus       296 ~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~  348 (368)
T 3jue_A          296 ARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS  348 (368)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------------------
T ss_pred             CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHH
Confidence            77889999999999999999999999887554334456677888888777653

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.87  E-value=6.3e-24  Score=147.58  Aligned_cols=128  Identities=16%  Similarity=0.154  Sum_probs=101.9

Q ss_pred             ccCCCCCHHHHHHHhCChHHHHHHhhcCCccc--eecCCCCCcHHHHHHHhCCHHHHHHHHhcCchh--hhhhccCCCCc
Q 035643           13 LDSRKASPLHLAAAKGYLDIVLKLVSVNPEMC--FARDIDGKNPLHIAAIRGNVNVLKELVKVRPQA--ALILMERGVTI   88 (159)
Q Consensus        13 ~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~--~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~--~~~~~~~~~t~   88 (159)
                      .+.++.||||+|+..|+.+++++|++.+....  ...+..+.||||+|+..|+.+++++|++.+...  ....+.. .||
T Consensus        88 ~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~Tp  166 (376)
T 2aja_A           88 KGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHA  166 (376)
T ss_dssp             HTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHH
T ss_pred             cCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCH
Confidence            34556799999999999999999999876321  123445778999999999999999999966421  1122222 799


Q ss_pred             hhhhhhcCChhHHHHHHhhcCCcccccc--ccCCCCCHHHHHH-HhCCcceeeeccCCC
Q 035643           89 LHACVNYNQLESLRLLVEIRNDHEFVNS--KDDNGSTILHLAV-LEKQVEVFYMDFDRN  144 (159)
Q Consensus        89 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~--~~~~~~tpl~~a~-~~~~~~~~~~ll~~~  144 (159)
                      ||+|+..|+.+++++|++.|++   ++.  .|..|.||||+|+ ..|+.+++++|++.+
T Consensus       167 Lh~Aa~~G~~eiv~~Ll~~ga~---~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~g  222 (376)
T 2aja_A          167 FRLAAENGHLHVLNRLCELAPT---EATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP  222 (376)
T ss_dssp             HHHHHHTTCHHHHHHHHHSCGG---GHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSH
T ss_pred             HHHHHHCCCHHHHHHHHHcCCc---cchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCC
Confidence            9999999999999999999988   666  7888999999999 999999999999864

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.86  E-value=2.3e-22  Score=130.70  Aligned_cols=108  Identities=19%  Similarity=0.115  Sum_probs=91.4

Q ss_pred             ccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhc-CCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhh
Q 035643            2 ILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSV-NPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALI   80 (159)
Q Consensus         2 ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~   80 (159)
                      +|++.|++++..|..|.||||+|+..|+.+++++|++. +.++ +.++..|.||||+|+..|+.+++++|++.+ .....
T Consensus        91 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~  168 (222)
T 3ehr_A           91 ECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTALHAAAWKGYADIVQLLLAKG-ARTDL  168 (222)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCHHHHHHHHTCHHHHHHHHHHT-CCSCC
T ss_pred             HHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCcc
Confidence            57789999999999999999999999999999999998 7777 689999999999999999999999999964 45556


Q ss_pred             hccCCCCchhhhhhcCChhHHHHHHhhcCCc
Q 035643           81 LMERGVTILHACVNYNQLESLRLLVEIRNDH  111 (159)
Q Consensus        81 ~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~  111 (159)
                      ++..|.|||++|+..+..++++.|+..++..
T Consensus       169 ~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~  199 (222)
T 3ehr_A          169 RNIEKKLAFDMATNAACASLLKKKQGTDAVR  199 (222)
T ss_dssp             CCTTSCCHHHHCCSHHHHHHHC---------
T ss_pred             ccCCCCCHHHHhcchhHHHHHHHHhccchhh
Confidence            7889999999999999999999999988883

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.86  E-value=3e-21  Score=129.46  Aligned_cols=107  Identities=21%  Similarity=0.193  Sum_probs=95.6

Q ss_pred             cccCCCc------cccccCCCCCHHHHHHHh---CChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhc
Q 035643            3 LRRKPEQ------AGELDSRKASPLHLAAAK---GYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV   73 (159)
Q Consensus         3 l~~~~~~------~~~~~~~g~t~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~   73 (159)
                      ++..|++      ++..+..|.||||+|+..   ++.+++++|++.++++ +.+|..|.||||+|+..|+.+++++|++ 
T Consensus       149 ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g~TpLh~A~~~g~~~~v~~Ll~-  226 (278)
T 1dcq_A          149 AYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALHYCCLTDNAECLKLLLR-  226 (278)
T ss_dssp             HHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHH-
T ss_pred             HHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHH-
Confidence            4566777      445588999999999999   8999999999999998 6899999999999999999999999999 


Q ss_pred             CchhhhhhccCCCCchhhhhhcCChhHHHHHHhhcCCc
Q 035643           74 RPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDH  111 (159)
Q Consensus        74 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~  111 (159)
                      .+.....++..|.||||+|+..++.+++++|++.+++.
T Consensus       227 ~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          227 GKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             cCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            45566778889999999999999999999999998763

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.85  E-value=6.2e-24  Score=147.60  Aligned_cols=133  Identities=14%  Similarity=0.139  Sum_probs=104.8

Q ss_pred             ccccCCCc---cccccCCCCCHHHHHHHhCChHHHHHHhhcCCcc--ceecCCCCCcHHHHHHHhCCHHHHHHHHhcCch
Q 035643            2 ILRRKPEQ---AGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEM--CFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQ   76 (159)
Q Consensus         2 ll~~~~~~---~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~--~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~   76 (159)
                      +|++.|+.   .+..+..|.||||+|+.+|+.+++++|++.+++.  .+..+.+ .||||+|+..|+.+++++|++.+..
T Consensus       110 ~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~  188 (376)
T 2aja_A          110 TLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPT  188 (376)
T ss_dssp             HHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGG
T ss_pred             HHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            46677762   2234556788999999999999999999999741  0122223 8999999999999999999996654


Q ss_pred             hhh-hhccCCCCchhhhh-hcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCc
Q 035643           77 AAL-ILMERGVTILHACV-NYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNN  145 (159)
Q Consensus        77 ~~~-~~~~~~~t~l~~a~-~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~  145 (159)
                      ... ..+..|.||||+|+ ..|+.+++++|++.|+.          +.||+|+|+..|+.+++++|++.+.
T Consensus       189 ~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~----------~~taL~~Aa~~g~~evv~lL~~~ga  249 (376)
T 2aja_A          189 EATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM----------LAYAEIHEFEYGEKYVNPFIARHVN  249 (376)
T ss_dssp             GHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH----------HHHHHHCTTTTTTTTHHHHHHHHHH
T ss_pred             cchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc----------cchHHHHHHHCCCHHHHHHHHhcCc
Confidence            332 26677899999999 99999999999996532          6799999999999999999998743

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.83  E-value=2.5e-20  Score=108.55  Aligned_cols=94  Identities=24%  Similarity=0.315  Sum_probs=54.4

Q ss_pred             ccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCc
Q 035643            9 QAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTI   88 (159)
Q Consensus         9 ~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~   88 (159)
                      .+...+.+|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..++.+++++|++. +.....++..|.||
T Consensus        16 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tp   93 (110)
T 2zgd_A           16 RGSHMGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEA-GADVXAQDKFGKTA   93 (110)
T ss_dssp             ------CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCH
T ss_pred             cccccCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccccCCCcH
Confidence            34455666666666666666666666666666655 45566666666666666666666666663 33344445556666


Q ss_pred             hhhhhhcCChhHHHHH
Q 035643           89 LHACVNYNQLESLRLL  104 (159)
Q Consensus        89 l~~a~~~~~~~~~~~L  104 (159)
                      ||+|+..++.+++++|
T Consensus        94 l~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           94 FDISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHHTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHh
Confidence            6666666666665544

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.82  E-value=2.8e-20  Score=122.60  Aligned_cols=106  Identities=22%  Similarity=0.205  Sum_probs=91.0

Q ss_pred             ccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecC-CCCCcHHHHHHHhCCHHHHHHHHhcCchhhhh
Q 035643            2 ILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARD-IDGKNPLHIAAIRGNVNVLKELVKVRPQAALI   80 (159)
Q Consensus         2 ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~   80 (159)
                      +|++ |++++.+|..|.||||+|+..|+.+++++|++.++++. .++ ..|.||||+|+..|+.+++++|++. +.....
T Consensus        63 ~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~  139 (244)
T 3ui2_A           63 QLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD-HRDMRGGLTALHMAAGYVRPEVVEALVEL-GADIEV  139 (244)
T ss_dssp             HTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT-CCCSSSCCCHHHHHHHTTCHHHHHHHHHT-TCCTTC
T ss_pred             HHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-cCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCC
Confidence            4667 99999999999999999999999999999999999984 565 8899999999999999999999995 455556


Q ss_pred             hccCCCCchhhhh----------------hcCChhHHHHHHhhcCC
Q 035643           81 LMERGVTILHACV----------------NYNQLESLRLLVEIRND  110 (159)
Q Consensus        81 ~~~~~~t~l~~a~----------------~~~~~~~~~~Ll~~~~~  110 (159)
                      ++..|.||||+|+                ..|+.+++++|++.+.+
T Consensus       140 ~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~~~~  185 (244)
T 3ui2_A          140 EDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFE  185 (244)
T ss_dssp             CCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             CCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence            7778888888887                55778888999876433

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.81  E-value=3.7e-20  Score=107.79  Aligned_cols=92  Identities=22%  Similarity=0.206  Sum_probs=81.2

Q ss_pred             eecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCH
Q 035643           45 FARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTI  124 (159)
Q Consensus        45 ~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tp  124 (159)
                      ...+.+|.++||+|+..++.+++++|++. +.....++..|.||||+|+..++.+++++|++.|++   ++.+|..|.||
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~tp   93 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMAN-GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD---VXAQDKFGKTA   93 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCH
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---ccccccCCCcH
Confidence            45677889999999999999999999995 455566788999999999999999999999999999   89999999999


Q ss_pred             HHHHHHhCCcceeeec
Q 035643          125 LHLAVLEKQVEVFYMD  140 (159)
Q Consensus       125 l~~a~~~~~~~~~~~l  140 (159)
                      ||+|+..|+.+++++|
T Consensus        94 l~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           94 FDISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHHTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHh
Confidence            9999999999998765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	159
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-12
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-11
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-11
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-11
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-04
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-10
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-10
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-04
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-10
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-09
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-04
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-09
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.002
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-09
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-08
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	8e-09
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-08
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	5e-06
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	8e-06
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	9e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	5e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	9e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	0.002
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	0.002
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.001
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.001
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.002
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.002
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.004

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.6 bits (143), Expect = 9e-12
 Identities = 27/132 (20%), Positives = 48/132 (36%), Gaps = 6/132 (4%)

Query: 20  PLHLAAAKGYLDIVLKLVS--VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQA 77
           PLH+A+  G+L IV  L+    +P      ++  + PLH+AA  G+  V K L++ + + 
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGASPN---VSNVKVETPLHMAARAGHTEVAKYLLQNKAKV 59

Query: 78  ALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVF 137
                +   T LH          ++LL+E   +     +       I       + V   
Sbjct: 60  N-AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLAL 118

Query: 138 YMDFDRNNMDNN 149
                       
Sbjct: 119 LEKEASQACMTK 130

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (141), Expect = 2e-11
 Identities = 36/163 (22%), Positives = 64/163 (39%), Gaps = 36/163 (22%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
           + +  +PLH+AA  G+ ++   L+    ++  A+  D + PLH AA  G+ N++K L++ 
Sbjct: 30  NVKVETPLHMAARAGHTEVAKYLLQNKAKVN-AKAKDDQTPLHCAARIGHTNMVKLLLEN 88

Query: 74  RPQAALILM--------------------------------ERGVTILHACVNYNQLESL 101
                L                                   ++G T LH    Y ++   
Sbjct: 89  NANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVA 148

Query: 102 RLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRN 144
            LL+E        N+   NG T LH+AV    +++  +   R 
Sbjct: 149 ELLLERDAH---PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRG 188

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (136), Expect = 8e-11
 Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 5/135 (3%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
             +  +PLH+AA  G + +   L+  +     A   +G  PLH+A    N++++K L+  
Sbjct: 129 TKKGFTPLHVAAKYGKVRVAELLLERDAHPN-AAGKNGLTPLHVAVHHNNLDIVKLLLP- 186

Query: 74  RPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQ 133
           R  +       G T LH     NQ+E  R L++        N++   G T LHLA  E  
Sbjct: 187 RGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA---NAESVQGVTPLHLAAQEGH 243

Query: 134 VEVFYMDFDRNNMDN 148
            E+  +   +    N
Sbjct: 244 AEMVALLLSKQANGN 258

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (136), Expect = 8e-11
 Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 5/123 (4%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
             +  +PLHLAA +G+ ++V  L+          +  G  PLH+ A  G+V V   L+K 
Sbjct: 228 SVQGVTPLHLAAQEGHAEMV-ALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK- 285

Query: 74  RPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQ 133
                      G T LH   +Y  ++ ++    +      VN+K   G + LH A  +  
Sbjct: 286 HGVMVDATTRMGYTPLHVASHYGNIKLVKF---LLQHQADVNAKTKLGYSPLHQAAQQGH 342

Query: 134 VEV 136
            ++
Sbjct: 343 TDI 345

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (134), Expect = 1e-10
 Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 4/101 (3%)

Query: 54  PLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEF 113
           PLH+A+  G++ ++K L++ R  +  +   +  T LH        E  + L++ +     
Sbjct: 3   PLHVASFMGHLPIVKNLLQ-RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK--- 58

Query: 114 VNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGC 154
           VN+K  +  T LH A       +  +  + N   N      
Sbjct: 59  VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAG 99

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 2e-09
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
                SPLH AA +G+ DIV  L+            DG  PL IA   G ++V   L  V
Sbjct: 327 TKLGYSPLHQAAQQGHTDIVTLLLKNGASP-NEVSSDGTTPLAIAKRLGYISVTDVLKVV 385

Query: 74  RPQAALILME 83
             + + +L+ 
Sbjct: 386 TDETSFVLVS 395

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 9e-09
 Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 5/137 (3%)

Query: 1   EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
           E+L  +            +PLH+A     LDIV  L+        +   +G  PLHIAA 
Sbjct: 149 ELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH-SPAWNGYTPLHIAAK 207

Query: 61  RGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDN 120
           +  V V + L++    A      +GVT LH        E +     + +     N  + +
Sbjct: 208 QNQVEVARSLLQYGGSANAE-SVQGVTPLHLAAQEGHAEMVA---LLLSKQANGNLGNKS 263

Query: 121 GSTILHLAVLEKQVEVF 137
           G T LHL   E  V V 
Sbjct: 264 GLTPLHLVAQEGHVPVA 280

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 8e-08
 Identities = 25/124 (20%), Positives = 51/124 (41%), Gaps = 2/124 (1%)

Query: 1   EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
           ++L +             +PLH+A+  G + +V K +  +     A+   G +PLH AA 
Sbjct: 281 DVLIKHGVMVDATTRMGYTPLHVASHYGNIKLV-KFLLQHQADVNAKTKLGYSPLHQAAQ 339

Query: 61  RGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDN 120
           +G+ +++  L+K        +   G T L        +    +L  + ++  FV   D +
Sbjct: 340 QGHTDIVTLLLKNGASPN-EVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKH 398

Query: 121 GSTI 124
             + 
Sbjct: 399 RMSF 402

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 1e-04
 Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 3/50 (6%)

Query: 87  TILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
           T LH       L  ++ L++        N  +    T LH+A      EV
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGAS---PNVSNVKVETPLHMAARAGHTEV 48

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (133), Expect = 1e-10
 Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 5/126 (3%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
               A+ L  AA KG+++++  L+        A D  G+N L  A +  + + ++ +  +
Sbjct: 145 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHL 204

Query: 74  RPQAALILMER---GVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVL 130
                  +  R   G T L   V    L  ++ L+E  +    +N  D +G T L LAV 
Sbjct: 205 LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE--INDTDSDGKTALLLAVE 262

Query: 131 EKQVEV 136
            K  ++
Sbjct: 263 LKLKKI 268

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 3e-08
 Identities = 17/59 (28%), Positives = 25/59 (42%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK 72
             R  +PL LA  K +L +V +L+          D DGK  L +A       + + L K
Sbjct: 216 GERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 274

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 7e-08
 Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 4/136 (2%)

Query: 19  SPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAA 78
             L  A     +D+V +L+     + F  +  G  PLH A      ++++ L++      
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 66

Query: 79  LILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFY 138
           L         L A +  +            +    VN  D  G T    A +  +V+   
Sbjct: 67  LRKKNGATPFLLAAIAGSVKLL----KLFLSKGADVNECDFYGFTAFMEAAVYGKVKALK 122

Query: 139 MDFDRNNMDNNIFYGC 154
             + R    N      
Sbjct: 123 FLYKRGANVNLRRKTK 138

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 2e-07
 Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 1/112 (0%)

Query: 40  NPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLE 99
             E        G   L  AA +G+V VLK L+             G   L   +  +   
Sbjct: 137 TKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS 196

Query: 100 SLRLLVEIRNDHEF-VNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNI 150
            +  +  +  DH   VN + + G T L LAV +K + +     ++ +++ N 
Sbjct: 197 DVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIND 248

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 4e-04
 Identities = 13/65 (20%), Positives = 29/65 (44%)

Query: 49  IDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIR 108
           ++  + L  A    +V+++++L++          E G T LH  V  ++ + + LL+   
Sbjct: 3   VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62

Query: 109 NDHEF 113
            D   
Sbjct: 63  ADPVL 67

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 55.7 bits (133), Expect = 2e-10
 Identities = 21/126 (16%), Positives = 39/126 (30%), Gaps = 3/126 (2%)

Query: 14  DSRKASPLHLAAAKGYLDIV--LKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELV 71
             +      +AA  G    +  L L+  + E+      +      +AA  G+++VL  L 
Sbjct: 87  GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLC 146

Query: 72  KVRPQA-ALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVL 130
           ++ P     ++                L  L  L E+         + +N       AV 
Sbjct: 147 ELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVG 206

Query: 131 EKQVEV 136
                V
Sbjct: 207 RGHHNV 212

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 46.4 bits (109), Expect = 3e-07
 Identities = 12/127 (9%), Positives = 35/127 (27%), Gaps = 14/127 (11%)

Query: 12  ELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELV 71
           +     A         G   +   +          R  +  +   ++   G  +++    
Sbjct: 218 DCPVMLAYAEIHEFEYGEKYVNPFIA-----RHVNRLKEMHDAFKLSNPDGVFDLVT--- 269

Query: 72  KVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEF--VNSKDDNGSTILHLAV 129
               ++  +     +  L    +   L+ +R L+ I          +   + + +L LA+
Sbjct: 270 ----KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLAL 325

Query: 130 LEKQVEV 136
                  
Sbjct: 326 RLGNQGA 332

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 46.0 bits (108), Expect = 3e-07
 Identities = 22/132 (16%), Positives = 47/132 (35%), Gaps = 6/132 (4%)

Query: 1   EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFA-RDIDGKNPLHIAA 59
            +L    E    + +       LAA  G+L ++ +L  + P    A    +  +   +AA
Sbjct: 110 CLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAA 169

Query: 60  IRGNVNVLKELVKVRPQAALILME--RGVTILHACVNYNQLESLRLLVEIRNDHEFVNSK 117
             G+++VL  L ++ P  A  +++         A V       +  L++       +   
Sbjct: 170 ENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM---LAYA 226

Query: 118 DDNGSTILHLAV 129
           + +        V
Sbjct: 227 EIHEFEYGEKYV 238

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 41.4 bits (96), Expect = 1e-05
 Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 4/59 (6%)

Query: 19  SPLHLAAAKGYLDIVLKLVSVNPEMCFARDI----DGKNPLHIAAIRGNVNVLKELVKV 73
             L     +  LD +  L+S+      A       D    L +A   GN      L+ +
Sbjct: 281 RNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI 339

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 37.2 bits (85), Expect = 4e-04
 Identities = 15/133 (11%), Positives = 30/133 (22%), Gaps = 10/133 (7%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELV-- 71
           +      L L     + ++    +S N              + +   +    V + L   
Sbjct: 9   NYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLY 68

Query: 72  --KVRPQAALILME------RGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGST 123
                  A  +  +      +   I           +L  L  +    E V         
Sbjct: 69  YAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQ 128

Query: 124 ILHLAVLEKQVEV 136
              LA     + V
Sbjct: 129 AFRLAAENGHLHV 141

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (129), Expect = 3e-10
 Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 5/115 (4%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
           +    +PLH AA+K   +I + L+        A+D      +H AA +GN+ ++  L+  
Sbjct: 100 NQNGCTPLHYAASKNRHEIAVMLLEGGANPD-AKDHYEATAMHRAAAKGNLKMIHILLYY 158

Query: 74  RPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLA 128
           +     I    G T LH   +  ++E  +LLV        +  ++    T L +A
Sbjct: 159 KASTN-IQDTEGNTPLHLACDEERVEEAKLLVSQGAS---IYIENKEEKTPLQVA 209

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 2e-09
 Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 4/119 (3%)

Query: 21  LHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALI 80
           +   A  G L+ + + +  +  +    D D +  LH A   G+  +++ L+++       
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 66

Query: 81  LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYM 139
                  +  A           LL         VN+ + NG T LH A  + + E+  M
Sbjct: 67  DDAGWSPLHIAASAGRDEIVKALL----GKGAQVNAVNQNGCTPLHYAASKNRHEIAVM 121

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 1e-04
 Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 5/126 (3%)

Query: 1   EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAI 60
           E +      A   D    + LH A + G+   +++ +         +D  G +PLHIAA 
Sbjct: 21  ESILADKSLATRTDQDSRTALHWACSAGH-TEIVEFLLQLGVPVNDKDDAGWSPLHIAAS 79

Query: 61  RGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDN 120
            G   ++K L+    Q    + + G T LH   + N+ E   +L+E   +    ++KD  
Sbjct: 80  AGRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGAN---PDAKDHY 135

Query: 121 GSTILH 126
            +T +H
Sbjct: 136 EATAMH 141

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 6e-04
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 2/70 (2%)

Query: 3   LRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRG 62
           L          D+   +PLHLA  +  ++    LVS    + +  + + K PL +A   G
Sbjct: 155 LLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI-YIENKEEKTPLQVAK-GG 212

Query: 63  NVNVLKELVK 72
              +LK +V+
Sbjct: 213 LGLILKRMVE 222

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (120), Expect = 5e-09
 Identities = 13/46 (28%), Positives = 20/46 (43%)

Query: 20 PLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVN 65
          PLH A  +     V +L+   P +   +D DG+ PLH +       
Sbjct: 3  PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHE 48

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 2e-06
 Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 2/95 (2%)

Query: 43  MCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLR 102
               +D   + PLH AA  G++ +++ L  +   A     ++G T L   +     ++  
Sbjct: 130 SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAV 189

Query: 103 LLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVF 137
           LLVE        +  D+ G+    +A+ E+  + F
Sbjct: 190 LLVEKYGAE--YDLVDNKGAKAEDVALNEQVKKFF 222

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 4e-05
 Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 2/68 (2%)

Query: 87  TILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNM 146
             LH     N+   ++ L+  +     +  KD +G   LH +V  +  E+      +   
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSL--LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 59

Query: 147 DNNIFYGC 154
            N   Y  
Sbjct: 60  VNLDDYPD 67

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 1e-04
 Identities = 12/45 (26%), Positives = 20/45 (44%)

Query: 54 PLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQL 98
          PLH A +      ++EL+  +P   L   + G   LH  V++   
Sbjct: 3  PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH 47

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.2 bits (79), Expect = 0.002
 Identities = 12/56 (21%), Positives = 18/56 (32%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKE 69
           D +  +PL  A A+G+ D  + LV          D  G     +A           
Sbjct: 169 DKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFFLN 224

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.2 bits (121), Expect = 5e-09
 Identities = 25/133 (18%), Positives = 46/133 (34%), Gaps = 10/133 (7%)

Query: 11  GELDSRKASPLHLAAAKGYLDIVLKLVS--VNPEMCFARDIDGKNPLHIAAIRGNVNVLK 68
           G +     + LHLA    +   +  L+      E    ++  G+  LH+AAI G  + ++
Sbjct: 3   GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVE 62

Query: 69  ELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHE-------FVNSKDDNG 121
           +L        +        +  AC          +L++ R  H           S+D   
Sbjct: 63  KLYAAGAGVLVAERGGHTALHLAC-RVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121

Query: 122 STILHLAVLEKQV 134
            T    A ++ Q 
Sbjct: 122 DTSHAPAAVDSQP 134

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.9 bits (115), Expect = 4e-08
 Identities = 18/72 (25%), Positives = 28/72 (38%)

Query: 83  ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFD 142
           E G T LH  V +     L  L+     HE+++ ++D G T LHLA +  +       + 
Sbjct: 7   EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYA 66

Query: 143 RNNMDNNIFYGC 154
                     G 
Sbjct: 67  AGAGVLVAERGG 78

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.1 bits (92), Expect = 4e-05
 Identities = 24/117 (20%), Positives = 39/117 (33%), Gaps = 3/117 (2%)

Query: 20  PLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAAL 79
           P  + +     +              A + DG  PLH+A I  +  +++ L         
Sbjct: 127 PAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNK 186

Query: 80  ILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
                G T LH  V       L LL++   D     ++   G T L  A+L     +
Sbjct: 187 PEPTCGRTPLHLAVEAQAASVLELLLKAGAD---PTARMYGGRTPLGSALLRPNPIL 240

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.2 bits (82), Expect = 7e-04
 Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 1/48 (2%)

Query: 25  AAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK 72
                  ++  L+    +   AR   G+ PL  A +R N  + + L  
Sbjct: 200 VEAQAASVLELLLKAGADPT-ARMYGGRTPLGSALLRPNPILARLLRA 246

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.8 bits (120), Expect = 8e-09
 Identities = 23/173 (13%), Positives = 43/173 (24%), Gaps = 48/173 (27%)

Query: 12  ELDSRKASPLHLAAAKGYLDIVLKLVS--VNPEMC------------------------- 44
            +D    +PLH   +   L++V  LV    N                             
Sbjct: 102 PVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEA 161

Query: 45  ---------FARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMER----------- 84
                       D   +  LH   I   +       K      +  + +           
Sbjct: 162 LLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTN 221

Query: 85  -GVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
              +  +      +   L  L         +N++D NG T L++A     + +
Sbjct: 222 EKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISI 274

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.3 bits (116), Expect = 3e-08
 Identities = 21/129 (16%), Positives = 42/129 (32%)

Query: 2   ILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIR 61
           +      +  E  S      H++      ++     +    +    D  G  PLH     
Sbjct: 58  LNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSI 117

Query: 62  GNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNG 121
            N+ ++K LVK               ++ A  + N  +S      +   +  +  +D   
Sbjct: 118 ANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMN 177

Query: 122 STILHLAVL 130
            TILH  ++
Sbjct: 178 RTILHHIII 186

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.7 bits (99), Expect = 5e-06
 Identities = 18/111 (16%), Positives = 39/111 (35%), Gaps = 6/111 (5%)

Query: 22  HLAAAKGYLDIVL-KLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALI 80
             AAAK YLDI++  +V        +   + ++  +        ++L+ L      A ++
Sbjct: 193 CSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANML 252

Query: 81  LM--ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAV 129
                 G T L+       +  +  L++   D       + +G   +    
Sbjct: 253 NAQDSNGDTCLNIAARLGNISIVDALLDYGAD---PFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.8 bits (94), Expect = 2e-05
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAA 59
           DS   + L++AA  G + IV  L+    +  F  +  G  P+   A
Sbjct: 256 DSNGDTCLNIAARLGNISIVDALLDYGADP-FIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.1 bits (87), Expect = 2e-04
 Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 2   ILRRKPEQAGELDSRKASPLHLAAAKGYLDIV--LKLVSVNPEMCFARDIDGKNPLHIAA 59
           I++++        + K S  +    +    I+  L L  +   M  A+D +G   L+IAA
Sbjct: 208 IVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAA 267

Query: 60  IRGNVNVLKELVK 72
             GN++++  L+ 
Sbjct: 268 RLGNISIVDALLD 280

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 48.6 bits (114), Expect = 4e-08
 Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 3/91 (3%)

Query: 46  ARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLV 105
           +    G+  LH AA   N+ ++K LV  +        E G T +       ++E +  L+
Sbjct: 182 SEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLI 241

Query: 106 EIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
           +       V + D    T   LA       +
Sbjct: 242 QQGAS---VEAVDATDHTARQLAQANNHHNI 269

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 44.3 bits (103), Expect = 1e-06
 Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 1/95 (1%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
             +  + LH AA    + IV  LV         +D DGK P+ +AA  G + V+  L++ 
Sbjct: 184 KYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ 243

Query: 74  RPQAALILMERGVTILHACVNYNQLESLRLLVEIR 108
                  +     T        N    + +    R
Sbjct: 244 GASVE-AVDATDHTARQLAQANNHHNIVDIFDRCR 277

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 44.0 bits (102), Expect = 2e-06
 Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 14/91 (15%)

Query: 19 SPLHLA-AAKGYLDIVLKLV--SVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRP 75
          SP+ L   A G   I   +   SVN           +  LH  A   +    ++L+    
Sbjct: 2  SPIKLHTEAAGSYAITEPITRESVN----IIDPRHNRTVLHWIASNSSAEKSEDLIVHEA 57

Query: 76 QAAL-------ILMERGVTILHACVNYNQLE 99
          +  +        +     T L   V   +  
Sbjct: 58 KECIAAGADVNAMDCDENTPLMLAVLARRRR 88

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 36.6 bits (83), Expect = 6e-04
 Identities = 18/108 (16%), Positives = 35/108 (32%), Gaps = 6/108 (5%)

Query: 52  KNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDH 111
           ++P+ +         + E +  R    +I      T+LH   + +  E    L+      
Sbjct: 1   ESPIKLHTEAAGSYAITEPI-TRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKE 59

Query: 112 EF-----VNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGC 154
                  VN+ D + +T L LAVL ++  +                  
Sbjct: 60  CIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSE 107

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 47.0 bits (110), Expect = 2e-07
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 4/89 (4%)

Query: 40  NPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLE 99
                      G   LH+AA +G   VLK L++ R     I    G T LHA  ++ + E
Sbjct: 188 GHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVN-IKDYDGWTPLHAAAHWGKEE 246

Query: 100 SLRLLVEIRNDHEFVNSKDDNGSTILHLA 128
           + R+LVE   D   + + +  G T   +A
Sbjct: 247 ACRILVENLCD---MEAVNKVGQTAFDVA 272

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.2 bits (95), Expect = 2e-05
 Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
                + LH+AAAKGY +++  L+    ++   +D DG  PLH AA  G     + LV+ 
Sbjct: 196 AKSGGTALHVAAAKGYTEVLKLLIQARYDVN-IKDYDGWTPLHAAAHWGKEEACRILVEN 254

Query: 74  RPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVN 115
                  + + G T           + L  L E++     ++
Sbjct: 255 LCDME-AVNKVGQTAFDVADE----DILGYLEELQKKQNLLH 291

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 37.4 bits (85), Expect = 3e-04
 Identities = 28/140 (20%), Positives = 51/140 (36%), Gaps = 9/140 (6%)

Query: 18  ASPLHLAAAKGYLDIVLKLVS--VNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRP 75
            +    A + G  + VL+L+    +       ++DG   LH A I  NV+++K LV+   
Sbjct: 41  GAVFLAACSSGDTEEVLRLLERGADIN---YANVDGLTALHQACIDDNVDMVKFLVENGA 97

Query: 76  QAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVE 135
                  E  + +  A        +  L     +    V + +  G T L +A  E   E
Sbjct: 98  NINQPDNEGWIPLHAAASCGYLDIAEYL----ISQGAHVGAVNSEGDTPLDIAEEEAMEE 153

Query: 136 VFYMDFDRNNMDNNIFYGCG 155
           +   + +R  +D        
Sbjct: 154 LLQNEVNRQGVDIEAARKEE 173

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (103), Expect = 1e-06
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 20  PLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLK 68
            LH A+ +G L +V  LV    +    ++     PL +A  R  +++L+
Sbjct: 180 ALHSASGRGLLPLVRTLVRSGADS-SLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (103), Expect = 1e-06
 Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 1/73 (1%)

Query: 83  ERGVTILHACVNYNQLESLRLLVEIRNDHEF-VNSKDDNGSTILHLAVLEKQVEVFYMDF 141
           E G T LH  V    L ++  LV +       ++  ++   T LHLAV+     V  +  
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 60

Query: 142 DRNNMDNNIFYGC 154
                   +    
Sbjct: 61  TAGASPMALDRHG 73

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 4e-06
 Identities = 18/101 (17%), Positives = 43/101 (42%), Gaps = 4/101 (3%)

Query: 36  LVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNY 95
           L+    ++       G++PL  A    ++++++ L++        +   G + LH+    
Sbjct: 129 LLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYS-GSSALHSASGR 187

Query: 96  NQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
             L  +R LV    D    + K+ +  T L +A   + +++
Sbjct: 188 GLLPLVRTLVRSGAD---SSLKNCHNDTPLMVARSRRVIDI 225

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 8e-06
 Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 3/111 (2%)

Query: 19  SPLHLAAAKGYLDIVLKLVSVNPEMCF---ARDIDGKNPLHIAAIRGNVNVLKELVKVRP 75
           +PLH+A  +G L  V +LV++  +        +   + PLH+A I    +V++ LV    
Sbjct: 5   TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGA 64

Query: 76  QAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILH 126
               +          AC + +      LL         + +++ +G T LH
Sbjct: 65  SPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH 115

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.3 bits (93), Expect = 2e-05
 Identities = 18/128 (14%), Positives = 38/128 (29%), Gaps = 6/128 (4%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLVS-----VNPEMCFARDIDGKNPLHIAAIRGNVNVLK 68
            + K   L  A     +  +L+  +                  +  LH+A    +   L 
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSL- 61

Query: 69  ELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLA 128
            +V    Q +  L ++      A       ++   L  +      +   +++G T L +A
Sbjct: 62  HIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIA 121

Query: 129 VLEKQVEV 136
              K    
Sbjct: 122 KRLKHEHC 129

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 4e-05
 Identities = 17/105 (16%), Positives = 31/105 (29%), Gaps = 33/105 (31%)

Query: 50  DGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRN 109
           DG + LH+A I     +  E+++        +                            
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIR-------QVKGDLA----------------------- 30

Query: 110 DHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGC 154
              F+N +++   T LHLAV+  Q E+               +  
Sbjct: 31  ---FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRG 72

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 5e-05
 Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 19  SPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK 72
           + LHLA      D+V  L+    ++       G +P  +   R +  + ++L +
Sbjct: 147 TALHLAVDLQNPDLVSLLLKCGADVN-RVTYQGYSPYQLTWGRPSTRIQQQLGQ 199

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 1e-04
 Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 3/43 (6%)

Query: 19 SPLHLAAAKGYLDIVLKLVSV---NPEMCFARDIDGKNPLHIA 58
          S LHLA       + ++++     +      ++   + PLH+A
Sbjct: 4  SFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLA 46

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 9e-04
 Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 3/97 (3%)

Query: 40  NPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLE 99
              +  A + +G   LH+A+I G + +++ LV +           G T LH  V+    +
Sbjct: 100 LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD 159

Query: 100 SLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
            + LL++   D    N     G +   L        +
Sbjct: 160 LVSLLLKCGADV---NRVTYQGYSPYQLTWGRPSTRI 193

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 36.7 bits (83), Expect = 5e-04
 Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 4/91 (4%)

Query: 46  ARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLV 105
           A D  GK  LH AA   N   +   + +         ++  T L         E+ + L+
Sbjct: 118 AADNSGKTALHWAAAVNNTEAVNI-LLMHHANRDAQDDKDETPLFLAAREGSYEASKALL 176

Query: 106 EIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
           +   +       D        +A      ++
Sbjct: 177 DNFAN---REITDHMDRLPRDVASERLHHDI 204

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 35.9 bits (81), Expect = 9e-04
 Identities = 31/141 (21%), Positives = 49/141 (34%), Gaps = 4/141 (2%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKV 73
           D    + LHLAA     D   K +        ++D  G+ PLH A     + V + L++ 
Sbjct: 20  DKTGETSLHLAARFARADAA-KRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRN 78

Query: 74  RPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQ 133
           R       M  G T L           +  L+    D   +N+ D++G T LH A     
Sbjct: 79  RATNLNARMHDGTTPLILAARLAIEGMVEDLITADAD---INAADNSGKTALHWAAAVNN 135

Query: 134 VEVFYMDFDRNNMDNNIFYGC 154
            E   +    +   +      
Sbjct: 136 TEAVNILLMHHANRDAQDDKD 156

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 35.2 bits (79), Expect = 0.002
 Identities = 10/39 (25%), Positives = 18/39 (46%)

Query: 32 IVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKEL 70
          ++  L++   E+    D  G+  LH+AA     +  K L
Sbjct: 4  VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRL 42

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 34.8 bits (78), Expect = 0.002
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 14  DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKEL 70
           D +  +PL LAA +G  +    L+          D   + P  +A+ R + ++++ L
Sbjct: 153 DDKDETPLFLAAREGSYEASKALLDNFANR-EITDHMDRLPRDVASERLHHDIVRLL 208

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.2 bits (79), Expect = 0.001
 Identities = 8/46 (17%), Positives = 17/46 (36%)

Query: 25  AAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKEL 70
           A +     V++L+         +    K    I+   GN ++ + L
Sbjct: 107 ATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (77), Expect = 0.001
 Identities = 21/119 (17%), Positives = 36/119 (30%), Gaps = 5/119 (4%)

Query: 18  ASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQA 77
           A  L  AAA+G ++ V  L+              +    +      V  L  L    P  
Sbjct: 4   ADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPN- 62

Query: 78  ALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEV 136
                    T+     +  +   L  LV +      ++ +D  G   + LA      +V
Sbjct: 63  ----CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDV 117

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (78), Expect = 0.002
 Identities = 5/30 (16%), Positives = 10/30 (33%)

Query: 43  MCFARDIDGKNPLHIAAIRGNVNVLKELVK 72
               R+  G     +A + G   V+  +  
Sbjct: 125 NVGHRNHKGDTACDLARLYGRNEVVSLMQA 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (78), Expect = 0.002
 Identities = 23/148 (15%), Positives = 39/148 (26%), Gaps = 27/148 (18%)

Query: 16  RKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRP 75
           R    L  AAA+G +  V +L+        A +  GK  L +         L+ L +   
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGAS 60

Query: 76  QAALILMERGVTILH----------------ACVNYNQLESLRLLVEIRNDHEF------ 113
                                          A VN         +     +         
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120

Query: 114 -----VNSKDDNGSTILHLAVLEKQVEV 136
                ++ +D  G T L LA+     ++
Sbjct: 121 AAESDLHRRDARGLTPLELALQRGAQDL 148

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.6 bits (75), Expect = 0.004
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 46  ARDIDGKNPLHIAAIRGNVNVLKELV 71
            RD  G  PL +A  RG  +++  L 
Sbjct: 128 RRDARGLTPLELALQRGAQDLVDILQ 153

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	159
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.96
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.96
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.95
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.95
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.95
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.95
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.95
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.95
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.95
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.94
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.94
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.93
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.93
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.93
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.92
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.92
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.92
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.91
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.91
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.91
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.9
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.9
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.89
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.89
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.88
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.88
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.87
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.86

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.1e-31  Score=172.05  Aligned_cols=152  Identities=22%  Similarity=0.211  Sum_probs=127.8

Q ss_pred             ccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhh---------------------------------cCCccceecC
Q 035643            2 ILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVS---------------------------------VNPEMCFARD   48 (159)
Q Consensus         2 ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~---------------------------------~~~~~~~~~~   48 (159)
                      +|...+.+++.+|.+|+||||+|+..|+.+++++++.                                 .+.++ +.++
T Consensus        22 ~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~-~~~d  100 (223)
T d1uoha_          22 SILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQV-NAVN  100 (223)
T ss_dssp             HHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCC
T ss_pred             HHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccccchhHHHhccCcee-EeeC
Confidence            4667889999999999999999999988777776654                                 33333 3567


Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHH
Q 035643           49 IDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLA  128 (159)
Q Consensus        49 ~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a  128 (159)
                      ..|.||||+|+..++.+++++|++.+ ......+..|.||||+|+..++..++++|++.+.+   ++.+|..|.||||.|
T Consensus       101 ~~g~tpL~~A~~~~~~e~~~~Ll~~g-~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~---i~~~d~~g~TpL~~A  176 (223)
T d1uoha_         101 QNGCTPLHYAASKNRHEIAVMLLEGG-ANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAS---TNIQDTEGNTPLHLA  176 (223)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---SCCCCTTCCCHHHHH
T ss_pred             CCCCchhhHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCccchhhhhcCCcchhhhhccccce---eeeccCCCCceeccc
Confidence            77888888888888888888888844 44556677788888888888888888888888888   889999999999999


Q ss_pred             HHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643          129 VLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus       129 ~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      +..|+.+++++|++. |++++..+..|+||+
T Consensus       177 a~~g~~~~v~~LL~~-Gad~~~~d~~g~tpl  206 (223)
T d1uoha_         177 CDEERVEEAKLLVSQ-GASIYIENKEEKTPL  206 (223)
T ss_dssp             HHTTCHHHHHHHHHT-TCCSCCCCTTSCCHH
T ss_pred             cccCcHHHHHHHHHC-CCCCCCCCCCCCCHH
Confidence            999999999999998 678999999999974

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=4.7e-31  Score=173.15  Aligned_cols=154  Identities=24%  Similarity=0.207  Sum_probs=109.9

Q ss_pred             ccccCCCc---cccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCch--
Q 035643            2 ILRRKPEQ---AGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQ--   76 (159)
Q Consensus         2 ll~~~~~~---~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~--   76 (159)
                      +|++.|++   ++.+|..|.||||+|+..|+.++++.|++.++++ +.+|..|.||+|+|+..++.++++++++....  
T Consensus        27 ~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i-~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~  105 (255)
T d1oy3d_          27 FLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTALHLACRVRAHTCACVLLQPRPSHP  105 (255)
T ss_dssp             HHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSC
T ss_pred             HHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccc-cccccccchhhhhhhccCchHHHHHHHhhccchh
Confidence            34555555   6667777888888888888888888888887776 56777778888888877777777776541100  


Q ss_pred             --------------------------------------------hhhhhccCCCCchhhhhhcCChhHHHHHHhhcCCcc
Q 035643           77 --------------------------------------------AALILMERGVTILHACVNYNQLESLRLLVEIRNDHE  112 (159)
Q Consensus        77 --------------------------------------------~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~  112 (159)
                                                                  ....++..|.||||+|+..++.+++++|++.+.+. 
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~-  184 (255)
T d1oy3d_         106 RDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL-  184 (255)
T ss_dssp             CCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-
T ss_pred             cccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhcccccc-
Confidence                                                        01123556778888888888888888888877773 


Q ss_pred             ccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643          113 FVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus       113 ~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                       ....+..|.||||+|+..++.+++++|+++ +.+++..+..|+||+
T Consensus       185 -~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~-gadin~~d~~g~t~L  229 (255)
T d1oy3d_         185 -NKPEPTCGRTPLHLAVEAQAASVLELLLKA-GADPTARMYGGRTPL  229 (255)
T ss_dssp             -TCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHH
T ss_pred             -cccccccccccccccccccHHHHHHHHHHC-CCCCCCCCCCCCCHH
Confidence             223456788888888888888888888877 567777777787764

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=6.8e-30  Score=167.59  Aligned_cols=144  Identities=22%  Similarity=0.184  Sum_probs=127.1

Q ss_pred             CccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCcc-------------------------------------
Q 035643            1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEM-------------------------------------   43 (159)
Q Consensus         1 ~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~-------------------------------------   43 (159)
                      ++|++.|++++.+|.+|.||||+|+..++.++++.|++.....                                     
T Consensus        62 ~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (255)
T d1oy3d_          62 EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEE  141 (255)
T ss_dssp             HHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC---------------------------------
T ss_pred             cccccccccccccccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHH
Confidence            3578899999999999999999999999999999987533210                                     


Q ss_pred             ---------ceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhcCChhHHHHHHhhcCCcccc
Q 035643           44 ---------CFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFV  114 (159)
Q Consensus        44 ---------~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~  114 (159)
                               .+.++..|.||||+|+..++.+++++|++.+.......+..|.||||+|+..++.+++++|++.|++   +
T Consensus       142 ~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gad---i  218 (255)
T d1oy3d_         142 PRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD---P  218 (255)
T ss_dssp             --CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---T
T ss_pred             HHhhhcCcccccccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCC---C
Confidence                     0135677899999999999999999999977766666677899999999999999999999999999   8


Q ss_pred             ccccCCCCCHHHHHHHhCCcceeeeccCCCccC
Q 035643          115 NSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMD  147 (159)
Q Consensus       115 ~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~  147 (159)
                      +.+|..|.||||+|+..++.+++++|+++|+..
T Consensus       219 n~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~~  251 (255)
T d1oy3d_         219 TARMYGGRTPLGSALLRPNPILARLLRAHGAPE  251 (255)
T ss_dssp             TCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCC
T ss_pred             CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC
Confidence            999999999999999999999999999997753

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.96  E-value=1.2e-29  Score=169.28  Aligned_cols=153  Identities=25%  Similarity=0.279  Sum_probs=135.1

Q ss_pred             ccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhh---
Q 035643            2 ILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAA---   78 (159)
Q Consensus         2 ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~---   78 (159)
                      +|++.|+++|..|.+|.||||+|+..|+.+++++|++.+.+. ...+..+.+|+++++..++.++++.+++.+....   
T Consensus        58 ~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~-~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~  136 (291)
T d1s70b_          58 RLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVN  136 (291)
T ss_dssp             HHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeeccccccc-ccccccccccccccccccccchhhcccccCccccccc
Confidence            578899999999999999999999999999999999999887 5778888999999999999999999886221100   


Q ss_pred             --------------------------------------------------------hhhccCCCCchhhhhhcCChhHHH
Q 035643           79 --------------------------------------------------------LILMERGVTILHACVNYNQLESLR  102 (159)
Q Consensus        79 --------------------------------------------------------~~~~~~~~t~l~~a~~~~~~~~~~  102 (159)
                                                                              ...+..|.||||.|+..++.++++
T Consensus       137 ~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~  216 (291)
T d1s70b_         137 SEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK  216 (291)
T ss_dssp             TTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHH
T ss_pred             ccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhc
Confidence                                                                    012345789999999999999999


Q ss_pred             HHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643          103 LLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus       103 ~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      +|++.|++   ++.++..|.||||+|+..|+.+++++|+++ |++++..+..|.||+
T Consensus       217 ~Ll~~g~d---in~~~~~g~TpL~~A~~~g~~~iv~lLl~~-Gadv~~~d~~G~TaL  269 (291)
T d1s70b_         217 LLIQARYD---VNIKDYDGWTPLHAAAHWGKEEACRILVEN-LCDMEAVNKVGQTAF  269 (291)
T ss_dssp             HHHTTTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCTT
T ss_pred             ccccceec---ccccccCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHH
Confidence            99999999   899999999999999999999999999998 668999999999986

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.2e-29  Score=160.46  Aligned_cols=153  Identities=26%  Similarity=0.282  Sum_probs=129.1

Q ss_pred             ccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCch-----
Q 035643            2 ILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQ-----   76 (159)
Q Consensus         2 ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~-----   76 (159)
                      .+...|+++|.+|.+|.||||+|+..|+.+++++|++.++++ +.++..|.+|+++++..+..++++.+++....     
T Consensus        24 ~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~-~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~  102 (221)
T d1iknd_          24 QVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHS  102 (221)
T ss_dssp             -----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSC
T ss_pred             HHHhCCCCcccCCCCCCccccccccccccccccccccccccc-cccccccccccccccccccccccchhhhhcccccccc
Confidence            355789999999999999999999999999999999999988 68999999999999999999999999884322     


Q ss_pred             hhhhhccCCCCchhhhhhcCChhHHHHHHhhcCCcccccccc-CCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCC
Q 035643           77 AALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKD-DNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCG  155 (159)
Q Consensus        77 ~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g  155 (159)
                      ........|.||++.|+..+..+++++++..+..   ++..+ .+|.||||+|+..|+.+++++|+++ +.+++.++..|
T Consensus       103 ~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~---~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~-gad~~~~~~~G  178 (221)
T d1iknd_         103 ILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD---VNAQEPCNGRTALHLAVDLQNPDLVSLLLKC-GADVNRVTYQG  178 (221)
T ss_dssp             GGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC---TTCCCTTTCCCHHHHHHHTTCHHHHHHHHTT-TCCSCCCCTTC
T ss_pred             cccccccccchhhhHHhhcCChhheeeecccCcc---cccccccCCCCccccccccccHHHHHHHHhc-CCcccccCCCC
Confidence            2223344578999999999999999999998887   55544 5699999999999999999999988 56889999999


Q ss_pred             CCCC
Q 035643          156 LSGY  159 (159)
Q Consensus       156 ~~~~  159 (159)
                      +||+
T Consensus       179 ~tpl  182 (221)
T d1iknd_         179 YSPY  182 (221)
T ss_dssp             CCGG
T ss_pred             CCHH
Confidence            9985

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.9e-29  Score=162.81  Aligned_cols=135  Identities=23%  Similarity=0.263  Sum_probs=124.0

Q ss_pred             ccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhh
Q 035643            2 ILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALIL   81 (159)
Q Consensus         2 ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~   81 (159)
                      +|+++|++++.+|.+|.||||+|+.+|+.++++.|++.+.++ +.++..|.+|+|+|+..+...++++|.+. .......
T Consensus        88 ~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~-~~~~~~~~t~L~~a~~~~~~~~~~~L~~~-~~~i~~~  165 (223)
T d1uoha_          88 ALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYEATAMHRAAAKGNLKMIHILLYY-KASTNIQ  165 (223)
T ss_dssp             HHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCC
T ss_pred             HHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCccchhhhhcCCcchhhhhccc-cceeeec
Confidence            577899999999999999999999999999999999999987 68899999999999999999999999984 4556677


Q ss_pred             ccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccC
Q 035643           82 MERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFD  142 (159)
Q Consensus        82 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~  142 (159)
                      +..|.||||+|+..++.+++++|++.|++   ++.+|..|+||||+|. .|..+++++|++
T Consensus       166 d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad---~~~~d~~g~tpl~~A~-~~~~~i~~~Ll~  222 (223)
T d1uoha_         166 DTEGNTPLHLACDEERVEEAKLLVSQGAS---IYIENKEEKTPLQVAK-GGLGLILKRMVE  222 (223)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCC---SCCCCTTSCCHHHHCC-TTHHHHHHHHHC
T ss_pred             cCCCCceeccccccCcHHHHHHHHHCCCC---CCCCCCCCCCHHHHHH-CCCHHHHhcccC
Confidence            88999999999999999999999999999   8999999999999984 688888888775

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6.2e-29  Score=152.01  Aligned_cols=139  Identities=20%  Similarity=0.211  Sum_probs=124.7

Q ss_pred             CccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhh
Q 035643            1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALI   80 (159)
Q Consensus         1 ~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~   80 (159)
                      ++|+++|++++.+|.+|.||||+|+ .++.++++.|++.++++ +..+..+.++++.++..+....++.++..+ .....
T Consensus        18 ~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~-~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~-~~~~~   94 (156)
T d1ihba_          18 TSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGFLDTLQTLLEFQ-ADVNI   94 (156)
T ss_dssp             HHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTC
T ss_pred             HHHHHCCCCcCccCCcccccccccc-ccccccccccccccccc-ccccccCccccccccccccccccccccccc-ccccc
Confidence            3688999999999999999999876 78999999999999987 688999999999999999999999999844 44556


Q ss_pred             hccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCC
Q 035643           81 LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRN  144 (159)
Q Consensus        81 ~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~  144 (159)
                      .+..|.+|+++|+..++.+++++|++.++..  .+.+|..|.||||+|+..++.+++++|+++|
T Consensus        95 ~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~--~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          95 EDNEGNLPLHLAAKEGHLRVVEFLVKHTASN--VGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccccccccccccccccccccccccccccccc--ccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            6788999999999999999999999988632  7888999999999999999999999999875

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=1.8e-29  Score=161.16  Aligned_cols=154  Identities=22%  Similarity=0.236  Sum_probs=118.1

Q ss_pred             CccccCCCcccc-ccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHh-------
Q 035643            1 EILRRKPEQAGE-LDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVK-------   72 (159)
Q Consensus         1 ~ll~~~~~~~~~-~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~-------   72 (159)
                      ++|+++|++++. .|.+|.||||+||.+|+.+++++|++.++.+ +.++..+.++++.++.............       
T Consensus         6 ~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~-n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (209)
T d1ot8a_           6 SDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADA-NSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLN   84 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTT
T ss_pred             HHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccc-ccccccccccccccccccccccccccccccccccc
Confidence            468899999997 5899999999999999999999999998887 5677777778777776665544333322       


Q ss_pred             --------------------------cCchhhhhhccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHH
Q 035643           73 --------------------------VRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILH  126 (159)
Q Consensus        73 --------------------------~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~  126 (159)
                                                .........+..|.||++.++..+...+++.++..+.+   ++.+|..|.||||
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~---~~~~d~~g~TpL~  161 (209)
T d1ot8a_          85 ARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHAN---RDAQDDKDETPLF  161 (209)
T ss_dssp             CCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCCHHH
T ss_pred             cccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeecccccc---ccccccccccccc
Confidence                                      01111223456677888888888888888888888777   7778888888888


Q ss_pred             HHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643          127 LAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus       127 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      +|+..|+.+++++|+++ +++++..+..|+||+
T Consensus       162 ~A~~~g~~~~v~~Ll~~-gad~n~~d~~g~Tpl  193 (209)
T d1ot8a_         162 LAAREGSYEASKALLDN-FANREITDHMDRLPR  193 (209)
T ss_dssp             HHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHH
T ss_pred             hhccccHHHHHHHHHHC-CCCCCCcCCCCCCHH
Confidence            88888888888888877 457777788888764

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=9.9e-29  Score=159.66  Aligned_cols=156  Identities=23%  Similarity=0.234  Sum_probs=128.1

Q ss_pred             ccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccc--eecCCCCCcHHHHHHHhCCHHHHHHHHhcC-----
Q 035643            2 ILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMC--FARDIDGKNPLHIAAIRGNVNVLKELVKVR-----   74 (159)
Q Consensus         2 ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~--~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~-----   74 (159)
                      +|...+.+++.+|.+|.||||+|+..|+.+++++|++.++++.  ...+..|.+|+|+++..+..++++.++..+     
T Consensus        19 Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (229)
T d1ixva_          19 LLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL   98 (229)
T ss_dssp             HHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCT
T ss_pred             HHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccccccccccccccccccccc
Confidence            3455788999999999999999999999999999999887652  345667778888887777766666555411     


Q ss_pred             -----------------------------chhhhhhccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHH
Q 035643           75 -----------------------------PQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTIL  125 (159)
Q Consensus        75 -----------------------------~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl  125 (159)
                                                   +......+..|.||||+|+..++.+++++|++.+...  ++.+|..|.|||
T Consensus        99 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~--in~~d~~g~TpL  176 (229)
T d1ixva_          99 NKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSA--VNWQDKQGWTPL  176 (229)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCC--SCCCCTTSCCHH
T ss_pred             cccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccccccccccccccc--ccccccccCCch
Confidence                                         1112234667899999999999999999999987432  788999999999


Q ss_pred             HHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643          126 HLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus       126 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      |+|+..|+.+++++|+++.|++++..+..|+||+
T Consensus       177 h~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l  210 (229)
T d1ixva_         177 FHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAE  210 (229)
T ss_dssp             HHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTG
T ss_pred             hhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHH
Confidence            9999999999999999877889999999999985

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.7e-29  Score=147.38  Aligned_cols=122  Identities=19%  Similarity=0.151  Sum_probs=108.5

Q ss_pred             CCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCC-CCchhhhhh
Q 035643           16 RKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERG-VTILHACVN   94 (159)
Q Consensus        16 ~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~-~t~l~~a~~   94 (159)
                      .+.++||+|+.+|+.+++++|++.+.++ +.++..|.||+|+|+ .|+.+++++|++.+... ...+..+ .+|||+|+.
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad~-n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~L~~A~~   78 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDAAR   78 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCcc-ccccccccccccccc-ccccccccccccccccc-ccccccccccccccccc
Confidence            3568999999999999999999999988 689999999999775 78999999999965443 4445554 579999999


Q ss_pred             cCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCC
Q 035643           95 YNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDR  143 (159)
Q Consensus        95 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~  143 (159)
                      .|+.+++++|++.|++   ++.+|..|+||+|+|+..|+.+++++|++.
T Consensus        79 ~g~~~~v~~Ll~~ga~---~~~~d~~G~T~l~~A~~~g~~~~v~~Llsa  124 (125)
T d1bi7b_          79 EGFLDTLVVLHRAGAR---LDVRDAWGRLPVDLAEELGHRDVARYLRAA  124 (125)
T ss_dssp             HTCHHHHHHHHHHTCC---SSCCCTTCCCHHHHHHHHTCHHHHHHHSSC
T ss_pred             cccccccccccccccc---cccccCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            9999999999999999   899999999999999999999999999874

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.5e-28  Score=150.46  Aligned_cols=134  Identities=22%  Similarity=0.278  Sum_probs=120.2

Q ss_pred             cccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhc
Q 035643            3 LRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILM   82 (159)
Q Consensus         3 l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~   82 (159)
                      |.+.+++++..|..|+||||+|+ .++.+++++|++.+.++ +..+..|.+|+++++..++.++++++++.+ ......+
T Consensus        22 L~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~-~~~n~~~   98 (156)
T d1bd8a_          22 LHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTGFLDTLKVLVEHG-ADVNVPD   98 (156)
T ss_dssp             HHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCC
T ss_pred             HHhCCCCCCccCCCCCccccccc-ccccccccccccccccc-cccccccccccccccccccccccccccccc-ccccccc
Confidence            44679999999999999999986 58899999999999887 578888999999999999999999999955 4455678


Q ss_pred             cCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCC
Q 035643           83 ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDR  143 (159)
Q Consensus        83 ~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~  143 (159)
                      ..|.||||+|+..++.+++++|+ .+++   ++.+|..|+||||+|+..|+.+++++|+++
T Consensus        99 ~~~~t~L~~A~~~~~~~i~~~L~-~~~~---~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          99 GTGALPIHLAVQEGHTAVVSFLA-AESD---LHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHH-TTSC---TTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             CCCCeeecccccccccccccccc-cccc---ccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            88999999999999999999887 5777   888999999999999999999999999876

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=8.9e-29  Score=144.74  Aligned_cols=106  Identities=24%  Similarity=0.240  Sum_probs=98.7

Q ss_pred             CHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhcCCh
Q 035643           19 SPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQL   98 (159)
Q Consensus        19 t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~   98 (159)
                      |||++|+++|+.++++.|++.+.++ +.++..|.||+|+|+..++.++++++++.+ .....++..|.||||+|+..++.
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~-n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g-~din~~d~~g~tpLh~A~~~~~~   81 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKG-ADINAPDKHHITPLLSAVYEGHV   81 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCC-CCCSSSSCCTTHHHHHHSTTTHHHHHHHSS-CTTTCCSSSCSCHHHHHHTTTCC
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhcc-cccccccccccccccccccccccccccccc-ceeeecccccccchhhhhhcCch
Confidence            7999999999999999999999988 689999999999999999999999999954 55667788999999999999999


Q ss_pred             hHHHHHHhhcCCccccccccCCCCCHHHHHH
Q 035643           99 ESLRLLVEIRNDHEFVNSKDDNGSTILHLAV  129 (159)
Q Consensus        99 ~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~  129 (159)
                      +++++|++.|++   ++.+|..|.||||+|.
T Consensus        82 ~~v~~Ll~~Gad---~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          82 SCVKLLLSKGAD---KTVKGPDGLTALEATD  109 (118)
T ss_dssp             HHHHHHHTTCCC---SSSSSSSTCCCCCTCS
T ss_pred             hhhhhhhccccc---ceeeCCCCCCHHHHHh
Confidence            999999999999   8999999999999884

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.95  E-value=8.8e-28  Score=158.95  Aligned_cols=152  Identities=16%  Similarity=0.194  Sum_probs=123.3

Q ss_pred             cccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCch------
Q 035643            3 LRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQ------   76 (159)
Q Consensus         3 l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~------   76 (159)
                      ++..|++||.+|.+|.||||+|+..|+.+++++|++.|+++ +.++..|.||+++|+..++.++..++......      
T Consensus        60 ~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~-n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~  138 (277)
T d2fo1e1          60 CIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEE  138 (277)
T ss_dssp             HHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSC
T ss_pred             HHHcCCCccccCCCCCeeecccccccccccccccccccccc-ccccccccccccchhhhcchhhhhhhhhcccccccccc
Confidence            46789999999999999999999999999999999999997 68899999999999999998887777541000      


Q ss_pred             ----------------------------------------hhhhhccCCCCchhhhhhcCChhHHHHHHh-hcCCccccc
Q 035643           77 ----------------------------------------AALILMERGVTILHACVNYNQLESLRLLVE-IRNDHEFVN  115 (159)
Q Consensus        77 ----------------------------------------~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~  115 (159)
                                                              .....+..|.|||+.++..++.+++++++. .+.+   .+
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~---~~  215 (277)
T d2fo1e1         139 LDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN---KD  215 (277)
T ss_dssp             CCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCC---TT
T ss_pred             cccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCcccccccccccccccccccccccc---cc
Confidence                                                    001123457788999888888888876554 4555   67


Q ss_pred             cccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643          116 SKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus       116 ~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      .+|..|.||||+|+..|+.+++++|++. +.+++..+..|+||+
T Consensus       216 ~~d~~g~tpL~~A~~~g~~~iv~~Ll~~-gadin~~d~~G~T~L  258 (277)
T d2fo1e1         216 KQDEDGKTPIMLAAQEGRIEVVMYLIQQ-GASVEAVDATDHTAR  258 (277)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSSCCCSSSCCHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHC-cCCCCCcCCCCCCHH
Confidence            7888889999999999999999988887 567888888888864

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.6e-27  Score=160.00  Aligned_cols=149  Identities=22%  Similarity=0.236  Sum_probs=115.8

Q ss_pred             cCCCccccc-cCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCH-------HHHHHHHhcCch
Q 035643            5 RKPEQAGEL-DSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNV-------NVLKELVKVRPQ   76 (159)
Q Consensus         5 ~~~~~~~~~-~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~-------~~~~~l~~~~~~   76 (159)
                      ..+.++|.. |.+|.||||+|+..|+.++|+.|++.++++ +.+|..|.||||.|+..++.       ++++++.    .
T Consensus        94 ~~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~----~  168 (301)
T d1sw6a_          94 NTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY----P  168 (301)
T ss_dssp             TSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG----G
T ss_pred             ccCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CcCCcccccHHHHhhhcccchhhhhHHHHHHHHh----h
Confidence            356778865 899999999999999999999999999998 58999999999999987642       3344332    3


Q ss_pred             hhhhhccCCCCchhhhhhcCCh----hH--------HHHHHhhcCCc---------------------------------
Q 035643           77 AALILMERGVTILHACVNYNQL----ES--------LRLLVEIRNDH---------------------------------  111 (159)
Q Consensus        77 ~~~~~~~~~~t~l~~a~~~~~~----~~--------~~~Ll~~~~~~---------------------------------  111 (159)
                      .....+..|+||||+++..+..    ..        +.++...+...                                 
T Consensus       169 ~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (301)
T d1sw6a_         169 CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWII  248 (301)
T ss_dssp             GGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHH
T ss_pred             hhhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHH
Confidence            3445677899999988765432    22        23333322220                                 


Q ss_pred             -cccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643          112 -EFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus       112 -~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                       ..++.+|..|+||||+|+..|+.+++++|++. |+++++.+..|+||+
T Consensus       249 ~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~-GAd~~~~n~~G~Tpl  296 (301)
T d1sw6a_         249 ANMLNAQDSNGDTCLNIAARLGNISIVDALLDY-GADPFIANKSGLRPV  296 (301)
T ss_dssp             HHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHT-TCCTTCCCTTSCCGG
T ss_pred             hcCccCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHH
Confidence             01567899999999999999999999999998 778999999999985

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.1e-26  Score=147.25  Aligned_cols=73  Identities=21%  Similarity=0.184  Sum_probs=67.1

Q ss_pred             cCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643           83 ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus        83 ~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      ..+.++++.|+..+...+++.+++.+..   +..+|..|.||||+|+..|+.+++++|+++ |++++..+..|+||+
T Consensus       142 ~~~~~~l~~a~~~~~~~~~~~~~~~~~~---~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-Gad~n~~d~~G~TpL  214 (228)
T d1k1aa_         142 KSGRSPLIHAVENNSLSMVQLLLQHGAN---VNAQMYSGSSALHSASGRGLLPLVRTLVRS-GADSSLKNCHNDTPL  214 (228)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCBCTTSCBHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCTT
T ss_pred             cchhhHHHHHHHhhhhhhhhhhhhhccc---cccccccCcchHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHH
Confidence            3567999999999999999999999888   888999999999999999999999999998 668999999999986

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=8.1e-27  Score=142.08  Aligned_cols=132  Identities=24%  Similarity=0.244  Sum_probs=72.0

Q ss_pred             cccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhc
Q 035643            3 LRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILM   82 (159)
Q Consensus         3 l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~   82 (159)
                      |+++|++++ .|..|+||||+|+..++.+.++.++...... ......+.++++.++...+.++++++.+. .......+
T Consensus        21 LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~   97 (153)
T d1awcb_          21 LMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEGHANIVEVLLKH-GADVNAKD   97 (153)
T ss_dssp             HHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCCC
T ss_pred             HHHcCCCcc-cccCCCccccccccccccccccccccccccc-cccccccccccccccccccceeeeccccc-CCcccccc
Confidence            344444443 3444555555555555555554444443333 22333334455555555555555555442 23334455


Q ss_pred             cCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeec
Q 035643           83 ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMD  140 (159)
Q Consensus        83 ~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~l  140 (159)
                      ..|.||||+|+..++.+++++|++.|++   ++.+|.+|.||||+|+..|+.+++++|
T Consensus        98 ~~g~T~L~~A~~~g~~~iv~~ll~~gad---~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          98 MLKMTALHWATEHNHQEVVELLIKYGAD---VHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccCchHHHhhhhcchhheeeeccccccC---CcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            5666666666666666666666666666   566666666666666666666666544

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=6.7e-27  Score=138.88  Aligned_cols=120  Identities=19%  Similarity=0.178  Sum_probs=106.3

Q ss_pred             CHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhcCCh
Q 035643           19 SPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQL   98 (159)
Q Consensus        19 t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~   98 (159)
                      ++|+.|+..|+.+++++|++++.++ +.+|..|+||||+|+..++.++++++++.+ ......+.+|.||||+|+..|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~-n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g-~~~~~~d~~g~tpLh~A~~~g~~   80 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQFG-VNVNAADSDGWTPLHCAASCNNV   80 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHHTCHHHHHHHHHHT-CCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCc-cccccccccccccccccccccccccccccc-cccccccccCcccccccchhhHH
Confidence            5789999999999999999999998 689999999999999999999999999954 45667788999999999999999


Q ss_pred             hHHHHHHhhcCCccccccccC-CCCCHHHHH--HHhCCcceeeeccCC
Q 035643           99 ESLRLLVEIRNDHEFVNSKDD-NGSTILHLA--VLEKQVEVFYMDFDR  143 (159)
Q Consensus        99 ~~~~~Ll~~~~~~~~~~~~~~-~~~tpl~~a--~~~~~~~~~~~ll~~  143 (159)
                      +++++|++.|++   ++..+. .++||++++  ...|+.+++++|++.
T Consensus        81 ~~v~~Ll~~ga~---v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          81 QVCKFLVESGAA---VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHHHTTCC---TTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHHHcCCC---cccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            999999999999   776654 588887766  467889999998764

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=6.3e-27  Score=142.98  Aligned_cols=135  Identities=24%  Similarity=0.301  Sum_probs=124.3

Q ss_pred             CHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhcCCh
Q 035643           19 SPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQL   98 (159)
Q Consensus        19 t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~   98 (159)
                      +|||+|+..|+.++++.|++.++++ +.+|..|.||||+|+ .++.+++++|++.+ ......+..+.++++.++..+..
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~-n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~-a~~~~~~~~~~~~l~~~~~~~~~   79 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMK-LGNPEIARRLLLRG-ANPDLKDRTGFAVIHDAARAGFL   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCC-SSCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCc-CccCCcccccccccc-cccccccccccccc-cccccccccCccccccccccccc
Confidence            7999999999999999999999998 689999999999886 78999999999954 44556778899999999999999


Q ss_pred             hHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643           99 ESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus        99 ~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      .+++.++..+.+   ++..+..|.+|+|+|+..++.+++++|+++++.+.+.++..|.||+
T Consensus        80 ~~~~~l~~~~~~---~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL  137 (156)
T d1ihba_          80 DTLQTLLEFQAD---VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTAC  137 (156)
T ss_dssp             HHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHH
T ss_pred             cccccccccccc---ccccccccccccccccccccccccccccccccccccccCCCCCCHH
Confidence            999999999988   8889999999999999999999999999998889999999999974

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=5.9e-26  Score=138.19  Aligned_cols=135  Identities=24%  Similarity=0.209  Sum_probs=120.9

Q ss_pred             CCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhcCC
Q 035643           18 ASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQ   97 (159)
Q Consensus        18 ~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~   97 (159)
                      .|||+.|++.|+.++++.|++.+++.  ..+..|.||||+|+..++.+++..+..... ........+.++++.++...+
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~--~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   79 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPF--TTDWLGTSPLHLAAQYGHFSTTEVLLRAGV-SRDARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCC--CCCTTCCCHHHHHHHHTCHHHHHHHHTTTC-CTTCCCTTCCCHHHHHHHHTC
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCc--ccccCCCccccccccccccccccccccccc-ccccccccccccccccccccc
Confidence            38999999999999999999999976  378999999999999999999999988443 334455667899999999999


Q ss_pred             hhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643           98 LESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus        98 ~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      .++++++.+.+.+   ...++..|.||||+|+..|+.+++++|++. +.+++..+..|.||+
T Consensus        80 ~~~~~~l~~~~~~---~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~-gad~~~~d~~g~Tpl  137 (153)
T d1awcb_          80 ANIVEVLLKHGAD---VNAKDMLKMTALHWATEHNHQEVVELLIKY-GADVHTQSKFCKTAF  137 (153)
T ss_dssp             HHHHHHHHTTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHH
T ss_pred             ceeeecccccCCc---cccccccCchHHHhhhhcchhheeeecccc-ccCCcccCCCCCCHH
Confidence            9999999999998   788999999999999999999999999999 678899999999974

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.3e-25  Score=144.40  Aligned_cols=140  Identities=24%  Similarity=0.234  Sum_probs=124.7

Q ss_pred             ccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCc-----cceecCCCCCcHHHHHHHhCCHHHHHHHHhcCch
Q 035643            2 ILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPE-----MCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQ   76 (159)
Q Consensus         2 ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~-----~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~   76 (159)
                      +|++.|++++..|..|.|||++++..++.++++.+++.+..     ........|.+|+|.|+..++.+++.+++..+..
T Consensus        57 ~L~~~g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~  136 (221)
T d1iknd_          57 ALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD  136 (221)
T ss_dssp             CCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             ccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcc
Confidence            57899999999999999999999999999999999875432     2234456688999999999999999999997766


Q ss_pred             hhhhhccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCC
Q 035643           77 AALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRN  144 (159)
Q Consensus        77 ~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~  144 (159)
                      .....+..|.||||+|+..|+.+++++|++.|++   ++.+|..|+||||+|+..++.+++++|++..
T Consensus       137 ~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad---~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~  201 (221)
T d1iknd_         137 VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD---VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLT  201 (221)
T ss_dssp             TTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC---SCCCCTTCCCGGGGCTTSSCHHHHHHHHTTS
T ss_pred             cccccccCCCCccccccccccHHHHHHHHhcCCc---ccccCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            6666667899999999999999999999999999   8999999999999999999999999998874

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.2e-25  Score=155.72  Aligned_cols=153  Identities=24%  Similarity=0.345  Sum_probs=133.5

Q ss_pred             CccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchh---
Q 035643            1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQA---   77 (159)
Q Consensus         1 ~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~---   77 (159)
                      |+|++.|+++|..|..|.||||+|+..|+.+++++|+++|+++ +.++..|.||+|+|+..|+.+++++|+......   
T Consensus        17 ~~Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi-~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~   95 (408)
T d1n11a_          17 KNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLA   95 (408)
T ss_dssp             HHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCC
T ss_pred             HHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHhhhccccc
Confidence            3578899999999999999999999999999999999999988 689999999999999999999999998632211   


Q ss_pred             -----------------------------hhhhccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHH
Q 035643           78 -----------------------------ALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLA  128 (159)
Q Consensus        78 -----------------------------~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a  128 (159)
                                                   ....+..+.++++.|+..++.+++++|++.+.+   ++..+..+.+|||+|
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~---~~~~~~~~~~~L~~A  172 (408)
T d1n11a_          96 TTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH---PNAAGKNGLTPLHVA  172 (408)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCSSCCCHHHHH
T ss_pred             cccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCC---CCcCCCcCchHHHHH
Confidence                                         112345678999999999999999999999998   788899999999999


Q ss_pred             HHhCCcceeeeccCCCccCcccccCCCCCC
Q 035643          129 VLEKQVEVFYMDFDRNNMDNNIFYGCGLSG  158 (159)
Q Consensus       129 ~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~  158 (159)
                      +..++.+++++|+.+ +.+++..+..|.|+
T Consensus       173 ~~~~~~~~~~~Ll~~-g~~~~~~~~~~~t~  201 (408)
T d1n11a_         173 VHHNNLDIVKLLLPR-GGSPHSPAWNGYTP  201 (408)
T ss_dssp             HHTTCHHHHHHHGGG-TCCSCCCCTTCCCH
T ss_pred             HHcCCHHHHHHHHhc-CCcccccCCCCCCc
Confidence            999999999999998 55677777777665

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.2e-25  Score=146.48  Aligned_cols=148  Identities=26%  Similarity=0.213  Sum_probs=112.8

Q ss_pred             CccccCCCccccccC-CCCCHHHHHHHhCChHHHHHHhhcCCccce----------------------------------
Q 035643            1 EILRRKPEQAGELDS-RKASPLHLAAAKGYLDIVLKLVSVNPEMCF----------------------------------   45 (159)
Q Consensus         1 ~ll~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~----------------------------------   45 (159)
                      |+|+++|+++|.++. .|+||||+|+..|+.+++++|++.+.....                                  
T Consensus        22 k~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (285)
T d1wdya_          22 QQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNEC  101 (285)
T ss_dssp             HHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCB
T ss_pred             HHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCccccchhhhhccccccc
Confidence            467899999987764 699999999999999999999875553311                                  


Q ss_pred             -----------------------------------------ecCCCCCcHHHHHHHhCCHHHHHHHHhcCchh-------
Q 035643           46 -----------------------------------------ARDIDGKNPLHIAAIRGNVNVLKELVKVRPQA-------   77 (159)
Q Consensus        46 -----------------------------------------~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~-------   77 (159)
                                                               .....|.||||+|+++++.+++++|++..+..       
T Consensus       102 ~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~  181 (285)
T d1wdya_         102 DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNM  181 (285)
T ss_dssp             CTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTT
T ss_pred             ccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCC
Confidence                                                     12223667888888888888888887532111       


Q ss_pred             ------------------------------hhhhccCCCCchhhhhhcCChhHHHHHHhh-cCCccccccccCCCCCHHH
Q 035643           78 ------------------------------ALILMERGVTILHACVNYNQLESLRLLVEI-RNDHEFVNSKDDNGSTILH  126 (159)
Q Consensus        78 ------------------------------~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~~tpl~  126 (159)
                                                    ...++..|.||||.|+..++.+++++|++. +.+   ++.+|.+|.||||
T Consensus       182 ~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~d---in~~d~~G~TpL~  258 (285)
T d1wdya_         182 GRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE---INDTDSDGKTALL  258 (285)
T ss_dssp             SCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCC---TTCCCTTSCCHHH
T ss_pred             CCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCC---CcCCCCCCCCHHH
Confidence                                          112355688889999888888888888874 667   7888888899999


Q ss_pred             HHHHhCCcceeeeccCCCccCccccc
Q 035643          127 LAVLEKQVEVFYMDFDRNNMDNNIFY  152 (159)
Q Consensus       127 ~a~~~~~~~~~~~ll~~~~~~~~~~~  152 (159)
                      +|+..|+.+++++|+++ |++++..|
T Consensus       259 ~A~~~~~~eiv~~Ll~~-GAd~n~~d  283 (285)
T d1wdya_         259 LAVELKLKKIAELLCKR-GASTDCGD  283 (285)
T ss_dssp             HHHHTTCHHHHHHHHHH-SSCSCCSS
T ss_pred             HHHHcCCHHHHHHHHHC-CCCCCccc
Confidence            99998899999888888 55676655

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.92  E-value=7e-27  Score=159.55  Aligned_cols=107  Identities=21%  Similarity=0.315  Sum_probs=83.6

Q ss_pred             CccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecC--CCCCcHHHHHHHhCCHHHHHHHHhcCchh-
Q 035643            1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARD--IDGKNPLHIAAIRGNVNVLKELVKVRPQA-   77 (159)
Q Consensus         1 ~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~--~~~~~~l~~a~~~~~~~~~~~l~~~~~~~-   77 (159)
                      ++|+..|++++.+|.+|+||||+|+.+|+.++|++|++.+++. +..+  ..|.||||+|+..|+.+++++|++.+... 
T Consensus       110 ~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~-~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~  188 (346)
T d2ajaa1         110 CLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTE-IMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEA  188 (346)
T ss_dssp             TTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTT-HHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGH
T ss_pred             HHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc-cccccccCCCChhHHHHHHhhHHHHHHHHHcCCccc
Confidence            3578899999999999999999999999999999999998876 3443  45889999999999999999999865433 


Q ss_pred             -hhhhccCCCCchhhhhhcCChhHHHHHHhhc
Q 035643           78 -ALILMERGVTILHACVNYNQLESLRLLVEIR  108 (159)
Q Consensus        78 -~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~  108 (159)
                       ....+..+.||++.|+..|+.+++++|++.|
T Consensus       189 ~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~g  220 (346)
T d2ajaa1         189 TAMIQAENYYAFRWAAVGRGHHNVINFLLDCP  220 (346)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSH
T ss_pred             ccccccCCCcchhhHHhhcCHHHHHHHHHhCC
Confidence             2334455678888888899999999888643

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=2.8e-25  Score=129.68  Aligned_cols=102  Identities=25%  Similarity=0.277  Sum_probs=95.1

Q ss_pred             cHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhC
Q 035643           53 NPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEK  132 (159)
Q Consensus        53 ~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~  132 (159)
                      |||++|++.|+.+++++|++.+ ......+..|.||||+|+..++.++++++++.|++   ++.+|..|.||||+|+..|
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g-~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~d---in~~d~~g~tpLh~A~~~~   79 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKG-EDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD---INAPDKHHITPLLSAVYEG   79 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTT-CCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCT---TTCCSSSCSCHHHHHHTTT
T ss_pred             hHHHHHHHCCCHHHHHHHHHhh-hccccccccccccccccccccccccccccccccce---eeecccccccchhhhhhcC
Confidence            7999999999999999999954 55667788999999999999999999999999999   8999999999999999999


Q ss_pred             CcceeeeccCCCccCcccccCCCCCCC
Q 035643          133 QVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus       133 ~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      +.+++++|+++ |.+++..+..|.||+
T Consensus        80 ~~~~v~~Ll~~-Gad~~~~d~~G~t~l  105 (118)
T d1myoa_          80 HVSCVKLLLSK-GADKTVKGPDGLTAL  105 (118)
T ss_dssp             CCHHHHHHHTT-CCCSSSSSSSTCCCC
T ss_pred             chhhhhhhhcc-cccceeeCCCCCCHH
Confidence            99999999999 578999999999986

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=5.2e-25  Score=152.51  Aligned_cols=133  Identities=23%  Similarity=0.246  Sum_probs=111.2

Q ss_pred             cccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhc
Q 035643            3 LRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILM   82 (159)
Q Consensus         3 l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~   82 (159)
                      +...+..++..+..|.||++.|+..++.+++++|++.+.++ +..+..+.||+|+++..+..++++++++. +...+.++
T Consensus       250 ~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~-~~~~~~~~t~L~~~~~~~~~~~~~~ll~~-g~~in~~d  327 (408)
T d1n11a_         250 LLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHVASHYGNIKLVKFLLQH-QADVNAKT  327 (408)
T ss_dssp             HHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCSSCCCHHHHHHHSSCSHHHHHHHHT-TCCTTCCC
T ss_pred             hhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCcc-ccccccccccchhhcccCcceeeeeeccc-cccccccC
Confidence            34566777888888888888888888888888888888877 56777788889988888888888888884 45556677


Q ss_pred             cCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeec
Q 035643           83 ERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMD  140 (159)
Q Consensus        83 ~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~l  140 (159)
                      ..|.||||+|+..|+.+++++|++.|++   ++.+|.+|+||||+|+..|+.+++++|
T Consensus       328 ~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd---~n~~d~~G~t~L~~A~~~~~~~iv~~L  382 (408)
T d1n11a_         328 KLGYSPLHQAAQQGHTDIVTLLLKNGAS---PNEVSSDGTTPLAIAKRLGYISVTDVL  382 (408)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCC---SCCCCSSSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            8889999999999999999999999988   888899999999999999988888754

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1.8e-24  Score=139.40  Aligned_cols=139  Identities=22%  Similarity=0.212  Sum_probs=114.3

Q ss_pred             CCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhh--hhhccC-----------
Q 035643           18 ASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAA--LILMER-----------   84 (159)
Q Consensus        18 ~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~--~~~~~~-----------   84 (159)
                      ++|||+|+..|+.+.++.|++..+...+.+|.+|.||||+|+..|+.+++++|++.+....  ...+..           
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            4899999999999999999987666667899999999999999999999999998553321  112222           


Q ss_pred             ------------------------CCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeec
Q 035643           85 ------------------------GVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMD  140 (159)
Q Consensus        85 ------------------------~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~l  140 (159)
                                              +.++++.++..++.++++.|+..+..   ...++..|.||+|+|+..|+.+++++|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~---~~~~~~~g~t~l~~a~~~~~~~~~~~L  157 (229)
T d1ixva_          81 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS---VRIKDKFNQIPLHRAASVGSLKLIELL  157 (229)
T ss_dssp             TCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---SCCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhhhhhhhccc---ccccCCCCCCccchhhhcccccccccc
Confidence                                    44566666666667777777777777   677889999999999999999999999


Q ss_pred             cCCCccCcccccCCCCCCC
Q 035643          141 FDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus       141 l~~~~~~~~~~~~~g~~~~  159 (159)
                      ++.+..+++..+..|.||+
T Consensus       158 l~~~~~~in~~d~~g~TpL  176 (229)
T d1ixva_         158 CGLGKSAVNWQDKQGWTPL  176 (229)
T ss_dssp             HTTTCCCSCCCCTTSCCHH
T ss_pred             cccccccccccccccCCch
Confidence            9998889999999999874

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=1.3e-24  Score=132.12  Aligned_cols=126  Identities=18%  Similarity=0.149  Sum_probs=106.5

Q ss_pred             HHHHHHHhCChHHHHHHhhcCCccce-----ecCCCCCcHHHHHHHh---CCHHHHHHHHhcCchhhhhhccCCCCchhh
Q 035643           20 PLHLAAAKGYLDIVLKLVSVNPEMCF-----ARDIDGKNPLHIAAIR---GNVNVLKELVKVRPQAALILMERGVTILHA   91 (159)
Q Consensus        20 ~l~~a~~~~~~~~~~~ll~~~~~~~~-----~~~~~~~~~l~~a~~~---~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~   91 (159)
                      .|+.|+..++...+..++..+.+...     ..+..|.||||+|+..   +..+++++|++.+ ...+.++..|.||||+
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~g-adin~~d~~g~TpLh~   87 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS-GNLDKQTGKGSTALHY   87 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHC-SCTTCCCTTCCCHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcC-CChhhhhhhhcccccc
Confidence            45678889999999988887765421     2367789999999975   6789999999965 4556788899999999


Q ss_pred             hhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcc
Q 035643           92 CVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNN  149 (159)
Q Consensus        92 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~  149 (159)
                      |+..|+.+++++|++.|++   ++.+|..|.||||+|+..|+.+++++|++.+....+
T Consensus        88 A~~~~~~~~v~~Ll~~gad---~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~~~  142 (154)
T d1dcqa1          88 CCLTDNAECLKLLLRGKAS---IEIANESGETPLDIAKRLKHEHCEELLTQALSGRFN  142 (154)
T ss_dssp             HHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCCC
T ss_pred             ccccccccccccccccCcc---ccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence            9999999999999999999   899999999999999999999999999986554443

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=9e-25  Score=133.44  Aligned_cols=133  Identities=27%  Similarity=0.278  Sum_probs=116.6

Q ss_pred             CHHHHHHHhCChHHHHHHhhcC-CccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhcCC
Q 035643           19 SPLHLAAAKGYLDIVLKLVSVN-PEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQ   97 (159)
Q Consensus        19 t~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~   97 (159)
                      ..|+.|+..|+.++|+.|++.+ .++ +.+|..|.||+|+|+ .++.+++++|++.+. .....+..+.+|++.++..++
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~-n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~-~~~~~~~~~~~~l~~~~~~~~   80 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHP-DALNRFGKTALQVMM-FGSTAIALELLKQGA-SPNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCT-TCCCTTSCCHHHHSC-TTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCC-CccCCCCCccccccc-ccccccccccccccc-ccccccccccccccccccccc
Confidence            4599999999999999999864 454 788999999999987 478999999998554 445567789999999999999


Q ss_pred             hhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643           98 LESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus        98 ~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      .++++++++.+.+   ++.+|..|.||||+|+..|+.+++++|+.  +.+++..+..|+||+
T Consensus        81 ~~~~~~~l~~~~~---~n~~~~~~~t~L~~A~~~~~~~i~~~L~~--~~~~~~~d~~G~TpL  137 (156)
T d1bd8a_          81 LDTLKVLVEHGAD---VNVPDGTGALPIHLAVQEGHTAVVSFLAA--ESDLHRRDARGLTPL  137 (156)
T ss_dssp             HHHHHHHHHTTCC---SCCCCTTSCCHHHHHHHHTCHHHHHHHHT--TSCTTCCCTTSCCHH
T ss_pred             ccccccccccccc---cccccCCCCeeeccccccccccccccccc--cccccccCCCCCCHH
Confidence            9999999999998   88999999999999999999999998874  467888999999974

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=7.1e-25  Score=140.07  Aligned_cols=57  Identities=23%  Similarity=0.246  Sum_probs=51.4

Q ss_pred             hhhccCCCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceee
Q 035643           79 LILMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFY  138 (159)
Q Consensus        79 ~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~  138 (159)
                      ..++..|.||||+|+..|+.+++++|++.|++   ++.+|..|.||||+|+..|..++++
T Consensus       171 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad---~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         171 NAQMYSGSSALHSASGRGLLPLVRTLVRSGAD---SSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             ccccccCcchHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHhCCCccccC
Confidence            34567899999999999999999999999999   8999999999999999988877763

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.90  E-value=1.7e-26  Score=157.62  Aligned_cols=136  Identities=15%  Similarity=0.160  Sum_probs=110.9

Q ss_pred             ccccccCCCCCHHHHHHHhCChHHHHH---HhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhh-hccC
Q 035643            9 QAGELDSRKASPLHLAAAKGYLDIVLK---LVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALI-LMER   84 (159)
Q Consensus         9 ~~~~~~~~g~t~l~~a~~~~~~~~~~~---ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~-~~~~   84 (159)
                      +++.++..|.||||+|+.+|+.++++.   |++.++++ +.++..|.||||+|+..|+.+++++|++.+...... .+.+
T Consensus        82 ~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~i-n~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~  160 (346)
T d2ajaa1          82 DAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIV-KVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE  160 (346)
T ss_dssp             HHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSC-C--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHH
T ss_pred             HHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcc-cccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccC
Confidence            456778899999999999999887765   67888877 678999999999999999999999999966544333 3346


Q ss_pred             CCCchhhhhhcCChhHHHHHHhhcCCccccccccCCCCCHHHHHHHhCCcceeeeccCCCc
Q 035643           85 GVTILHACVNYNQLESLRLLVEIRNDHEFVNSKDDNGSTILHLAVLEKQVEVFYMDFDRNN  145 (159)
Q Consensus        85 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~tpl~~a~~~~~~~~~~~ll~~~~  145 (159)
                      |.||||+|+..|+.+++++|++.+++....+..+..+.||++.|+..|+.+++++|++.|.
T Consensus       161 g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga  221 (346)
T d2ajaa1         161 NYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV  221 (346)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH
T ss_pred             CCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCC
Confidence            8999999999999999999999887743344555667889999999999999999999853

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.90  E-value=1.9e-24  Score=142.71  Aligned_cols=139  Identities=19%  Similarity=0.173  Sum_probs=119.8

Q ss_pred             CccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCc--------------------------------------
Q 035643            1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPE--------------------------------------   42 (159)
Q Consensus         1 ~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~--------------------------------------   42 (159)
                      ++|+++|++++.+|.+|.|||++|+..++.++++.+......                                      
T Consensus        91 ~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (277)
T d2fo1e1          91 AYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGA  170 (277)
T ss_dssp             HHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTC
T ss_pred             ccccccccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccc
Confidence            468899999999999999999999999998888887542100                                      


Q ss_pred             --------cceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhcCChhHHHHHHhhcCCcccc
Q 035643           43 --------MCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEFV  114 (159)
Q Consensus        43 --------~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~  114 (159)
                              .....+..|.|++|+++..++.+++++++...+.....++..|.||||+|+..|+.+++++|++.|++   +
T Consensus       171 ~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gad---i  247 (277)
T d2fo1e1         171 KVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS---V  247 (277)
T ss_dssp             CSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---S
T ss_pred             cccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCC---C
Confidence                    00133456789999999999999999877767777777889999999999999999999999999999   8


Q ss_pred             ccccCCCCCHHHHHHHhCCcceeeeccC
Q 035643          115 NSKDDNGSTILHLAVLEKQVEVFYMDFD  142 (159)
Q Consensus       115 ~~~~~~~~tpl~~a~~~~~~~~~~~ll~  142 (159)
                      +.+|..|+||||+|+..|+.+++++|++
T Consensus       248 n~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         248 EAVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             SCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999999999998875

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.4e-23  Score=124.33  Aligned_cols=107  Identities=23%  Similarity=0.208  Sum_probs=92.5

Q ss_pred             CccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhh
Q 035643            1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALI   80 (159)
Q Consensus         1 ~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~   80 (159)
                      |+|+++|++++.+|.+|+||||+|+..++.+++++|++.+.+. +.+|..|+||||+|+.+|+.+++++|++.+..+...
T Consensus        18 ~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~-~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~v~~~   96 (130)
T d1ycsb1          18 QRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAM   96 (130)
T ss_dssp             HHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             HHHHHcCCCcccccccccccccccccccccccccccccccccc-ccccccCcccccccchhhHHHHHHHHHHcCCCcccc
Confidence            3578999999999999999999999999999999999999987 689999999999999999999999999966555444


Q ss_pred             hccCCCCchhh--hhhcCChhHHHHHHhhc
Q 035643           81 LMERGVTILHA--CVNYNQLESLRLLVEIR  108 (159)
Q Consensus        81 ~~~~~~t~l~~--a~~~~~~~~~~~Ll~~~  108 (159)
                      ....+.||+++  ++..|+.+++++|++.+
T Consensus        97 ~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          97 TYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             CSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            44457777655  46778899999999854

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=4.9e-23  Score=125.12  Aligned_cols=106  Identities=23%  Similarity=0.213  Sum_probs=92.1

Q ss_pred             ccCCCccccc------cCCCCCHHHHHHHh---CChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcC
Q 035643            4 RRKPEQAGEL------DSRKASPLHLAAAK---GYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVR   74 (159)
Q Consensus         4 ~~~~~~~~~~------~~~g~t~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~   74 (159)
                      +..|.+++..      +..|.||||+|+..   +..+++++|++.++++ +.+|..|.||||+|+..|+.+++++|++.+
T Consensus        26 ~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi-n~~d~~g~TpLh~A~~~~~~~~v~~Ll~~g  104 (154)
T d1dcqa1          26 YADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALHYCCLTDNAECLKLLLRGK  104 (154)
T ss_dssp             HHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCCh-hhhhhhhccccccccccccccccccccccC
Confidence            3456665554      67899999999975   6789999999999988 689999999999999999999999999954


Q ss_pred             chhhhhhccCCCCchhhhhhcCChhHHHHHHhhcCCc
Q 035643           75 PQAALILMERGVTILHACVNYNQLESLRLLVEIRNDH  111 (159)
Q Consensus        75 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~  111 (159)
                       .....++..|.||||+|+..++.+++++|++.++..
T Consensus       105 -ad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1         105 -ASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             -CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             -ccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Confidence             555678899999999999999999999999987664

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.9e-23  Score=137.54  Aligned_cols=110  Identities=17%  Similarity=0.149  Sum_probs=87.6

Q ss_pred             cCCCccccccCCCCCHHHHHHHhC----ChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhh
Q 035643            5 RKPEQAGELDSRKASPLHLAAAKG----YLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALI   80 (159)
Q Consensus         5 ~~~~~~~~~~~~g~t~l~~a~~~~----~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~   80 (159)
                      +.|++++..+..|.+++..+...+    ..+++++|++.++++ +.++..|.||||+|+..++.+++++|++..+...+.
T Consensus       170 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~-n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~  248 (285)
T d1wdya_         170 EMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIND  248 (285)
T ss_dssp             TSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS-SCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTC
T ss_pred             ccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCC-CccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcC
Confidence            446666666666666655544322    335666666666665 567889999999999999999999999876777778


Q ss_pred             hccCCCCchhhhhhcCChhHHHHHHhhcCCcccccccc
Q 035643           81 LMERGVTILHACVNYNQLESLRLLVEIRNDHEFVNSKD  118 (159)
Q Consensus        81 ~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  118 (159)
                      ++..|.||||+|+..++.+++++|++.|++   ++.+|
T Consensus       249 ~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd---~n~~d  283 (285)
T d1wdya_         249 TDSDGKTALLLAVELKLKKIAELLCKRGAS---TDCGD  283 (285)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHSSC---SCCSS
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCccc
Confidence            889999999999999999999999999999   77766

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.1e-23  Score=124.08  Aligned_cols=103  Identities=17%  Similarity=0.116  Sum_probs=91.3

Q ss_pred             CccccCCCccccccCCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCC-cHHHHHHHhCCHHHHHHHHhcCchhhh
Q 035643            1 EILRRKPEQAGELDSRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGK-NPLHIAAIRGNVNVLKELVKVRPQAAL   79 (159)
Q Consensus         1 ~ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~-~~l~~a~~~~~~~~~~~l~~~~~~~~~   79 (159)
                      |+|+++|++++.++..|.||+|+|+ .|+.+++++|++.++++ +.++..+. +|+|+|+..|+.+++++|++.+ ....
T Consensus        20 ~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g-a~~~   96 (125)
T d1bi7b_          20 RALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDAAREGFLDTLVVLHRAG-ARLD   96 (125)
T ss_dssp             HHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHHHHTCHHHHHHHHHHT-CCSS
T ss_pred             HHHHHcCCccccccccccccccccc-ccccccccccccccccc-ccccccccccccccccccccccccccccccc-cccc
Confidence            4678999999999999999999775 79999999999999988 46666654 7999999999999999999964 5566


Q ss_pred             hhccCCCCchhhhhhcCChhHHHHHHh
Q 035643           80 ILMERGVTILHACVNYNQLESLRLLVE  106 (159)
Q Consensus        80 ~~~~~~~t~l~~a~~~~~~~~~~~Ll~  106 (159)
                      .++..|.||||+|+..|+.+++++|++
T Consensus        97 ~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          97 VRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            778899999999999999999999976

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.88  E-value=6.8e-23  Score=136.29  Aligned_cols=142  Identities=23%  Similarity=0.231  Sum_probs=120.3

Q ss_pred             CCCCCHHHHHHHhCChHHHHHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhh
Q 035643           15 SRKASPLHLAAAKGYLDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVN   94 (159)
Q Consensus        15 ~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~   94 (159)
                      .++.|+|+.||..|+.++|+.|++.|+++ +.+|..|.||||+|+..|+.+++++|++.+. .....+..+.+||+.++.
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~~Gadv-n~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~-~~~~~~~~~~~~L~~a~~  115 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDNVDMVKFLVENGA-NINQPDNEGWIPLHAAAS  115 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHH
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCcHHHHHHhcCCceeeeeeccccc-cccccccccccccccccc
Confidence            44669999999999999999999999997 6899999999999999999999999999554 344556678899999999


Q ss_pred             cCChhHHHHHHhhcCCccc---------------------------------------------------------cccc
Q 035643           95 YNQLESLRLLVEIRNDHEF---------------------------------------------------------VNSK  117 (159)
Q Consensus        95 ~~~~~~~~~Ll~~~~~~~~---------------------------------------------------------~~~~  117 (159)
                      .++.++++.|++.+.....                                                         ....
T Consensus       116 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (291)
T d1s70b_         116 CGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRH  195 (291)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC
T ss_pred             ccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccc
Confidence            9999999999876543211                                                         2334


Q ss_pred             cCCCCCHHHHHHHhCCcceeeeccCCCccCcccccCCCCCCC
Q 035643          118 DDNGSTILHLAVLEKQVEVFYMDFDRNNMDNNIFYGCGLSGY  159 (159)
Q Consensus       118 ~~~~~tpl~~a~~~~~~~~~~~ll~~~~~~~~~~~~~g~~~~  159 (159)
                      +..|.||||.|+..|..+++++|++. +.+++..+..|+||+
T Consensus       196 ~~~g~t~L~~a~~~~~~~~~~~Ll~~-g~din~~~~~g~TpL  236 (291)
T d1s70b_         196 AKSGGTALHVAAAKGYTEVLKLLIQA-RYDVNIKDYDGWTPL  236 (291)
T ss_dssp             TTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCCCTTCCCHH
T ss_pred             cCCCCChhhHHHHcCChhhhcccccc-eecccccccCCCCHH
Confidence            56789999999999999999999998 568888899999874

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.87  E-value=1.5e-23  Score=133.38  Aligned_cols=102  Identities=17%  Similarity=0.140  Sum_probs=89.2

Q ss_pred             HHHhhcCCccceecCCCCCcHHHHHHHhCCHHHHHHHHhcCchhhhhhccCCCCchhhhhhcCChhHHHHHHhhcCCccc
Q 035643           34 LKLVSVNPEMCFARDIDGKNPLHIAAIRGNVNVLKELVKVRPQAALILMERGVTILHACVNYNQLESLRLLVEIRNDHEF  113 (159)
Q Consensus        34 ~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~  113 (159)
                      +.|...+.+. +.++..|.||+++++..+...+++.++..+ ......+..|.||||+|+..|+.+++++|++.|++   
T Consensus       107 ~~L~~~~~~~-~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~-~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad---  181 (209)
T d1ot8a_         107 EDLITADADI-NAADNSGKTALHWAAAVNNTEAVNILLMHH-ANRDAQDDKDETPLFLAAREGSYEASKALLDNFAN---  181 (209)
T ss_dssp             HHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---
T ss_pred             hhhhhhcccc-cccCCCCCCcchhhcccCcceeeeeecccc-ccccccccccccccchhccccHHHHHHHHHHCCCC---
Confidence            4456667666 578888999999999999999999999954 44566788899999999999999999999999999   


Q ss_pred             cccccCCCCCHHHHHHHhCCcceeeec
Q 035643          114 VNSKDDNGSTILHLAVLEKQVEVFYMD  140 (159)
Q Consensus       114 ~~~~~~~~~tpl~~a~~~~~~~~~~~l  140 (159)
                      ++.+|..|.||||+|+..|+.+++++|
T Consensus       182 ~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         182 REITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            889999999999999999999999875

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=1.2e-22  Score=136.09  Aligned_cols=122  Identities=15%  Similarity=0.053  Sum_probs=92.1

Q ss_pred             CccccCCCccccccCCCCCHHHHHHHhCC-------hHHHHHHhhcCCccceecCCCCCcHHHHHHHhCC----HHHH--
Q 035643            1 EILRRKPEQAGELDSRKASPLHLAAAKGY-------LDIVLKLVSVNPEMCFARDIDGKNPLHIAAIRGN----VNVL--   67 (159)
Q Consensus         1 ~ll~~~~~~~~~~~~~g~t~l~~a~~~~~-------~~~~~~ll~~~~~~~~~~~~~~~~~l~~a~~~~~----~~~~--   67 (159)
                      ++|++.|++++.+|..|.||||.|+..++       .++++.+..    .....|..|+||+|+++..+.    ...+  
T Consensus       124 ~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~----~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~  199 (301)
T d1sw6a_         124 KHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP----CLILEDSMNRTILHHIIITSGMTGCSAAAKY  199 (301)
T ss_dssp             HHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG----GGGEECTTCCCHHHHHHHHHTSTTCHHHHHH
T ss_pred             HHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh----hhhhcccccCCHHHHHHHHhCccccHHHHHH
Confidence            36789999999999999999999998664       233333322    224678899999999886443    2222  


Q ss_pred             ------HHHHhcCch------------------------------------hhhhhccCCCCchhhhhhcCChhHHHHHH
Q 035643           68 ------KELVKVRPQ------------------------------------AALILMERGVTILHACVNYNQLESLRLLV  105 (159)
Q Consensus        68 ------~~l~~~~~~------------------------------------~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll  105 (159)
                            .++......                                    ..+.+|..|+||||+|++.|+.+++++|+
T Consensus       200 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll  279 (301)
T d1sw6a_         200 YLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALL  279 (301)
T ss_dssp             HHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence                  233321110                                    12345788999999999999999999999


Q ss_pred             hhcCCccccccccCCCCCHHHHHH
Q 035643          106 EIRNDHEFVNSKDDNGSTILHLAV  129 (159)
Q Consensus       106 ~~~~~~~~~~~~~~~~~tpl~~a~  129 (159)
                      +.|++   ++.+|..|.|||++|+
T Consensus       280 ~~GAd---~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         280 DYGAD---PFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HTTCC---TTCCCTTSCCGGGGTC
T ss_pred             HCCCC---CCCCCCCCCCHHHHcC
Confidence            99999   8999999999999985