Citrus Sinensis ID: 035700

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
MGKARAASCSSSSTESSTQIRRNLSTDLRLGLSISASQQDDPFSLPSYLCIFNVSVGDDDQASDWPPTKPLIMRRALEEEENEGSSATFFVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVGDVPWEMFLSTVRRLKITRAM
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccHHHHHHcccccccEEEEEEccEEEEEEEcccccccHHHHHHHHHHHHccccccccccccccccccccEEEEEEcccccEEEcccccHHHHHHHccEEEEEccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccEEEcccccHHHcHcccccccccccccccEEEEEEccccccHHHEcHHHcccHHHHHHHHHHHHcccEEcccccccccccccccEEEEEEcccccEEEEccccHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mgkaraascsssstessTQIRRNLSTdlrlglsisasqqddpfslpsylcifnvsvgdddqasdwpptkplIMRRALeeeenegssaTFFVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIwsemdgsvsaysETCHvltyedkegdwmmvgdvpWEMFLSTVRRLKITRAM
Flexible Loop (DISEMBL)
mgkaraascsssstesstqIRRNLSTDLRLGLSISASQQDDPFSLPSYLCIFNVSvgdddqasdwPPTKPLIMRRALEeeenegssatFFVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVGDVPWEMFLSTVRRLKITRAM
Low Complexity Region (SEG)
MGKARAAscsssstesstQIRRNLSTDLRLGLSISASQQDDPFSLPSYLCIFNVSVGDDDQASDWPPTKPLIMRRALEEEENEGSSATFFVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVGDVPWEMFLSTVRRLKITRAM
Disordered region (IsUnstruct)
******************************************FSLPSYLCIFNVSVG*****************************ATFFVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVGDVPWEMFLSTVRRLKI****
Disordered Region (DISOPRED)
******************************************************************************************VKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVGDVPWEMFLSTVRRLKITRAM
Disordered Region (DISEMBL)
********************RRNLSTDLRLGLSISASQQDDPFSLPSYLCIFNVSVGDDDQASDWPPTKPLIMRRAL********SATFFVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVGDVPWEMFLSTVRRLKITRAM
Disordered Region (DISPRO)
*********************************************************DDDQASDWPPTKPLIMRR*********SSATFFVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVGDVPWEMFLSTVRRLKITRAM
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGKARAASCSSSSTESSTQIRRNLSTDLRLGLSISASQQDDPFSLPSYLCIFNVSVGDDDQASDWPPTKPLIMRRALEEEENEGSSATFFVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVGDVPWEMFLSTVRRLKITRAM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	179	2.2.26 [Sep-21-2011]
Q9M1R4	172	Auxin-responsive protein	yes	no	0.815	0.848	0.530	1e-36
O24410	175	Auxin-responsive protein	no	no	0.804	0.822	0.503	2e-34
Q8H174	158	Auxin-responsive protein	no	no	0.581	0.658	0.55	2e-28
Q6Z5M0	205	Auxin-responsive protein	yes	no	0.798	0.697	0.417	3e-26
A2ZRY8	203	Auxin-responsive protein	no	no	0.916	0.807	0.471	6e-25
A2WNM0	203	Auxin-responsive protein	N/A	no	0.916	0.807	0.471	6e-25
Q38829	246	Auxin-responsive protein	no	no	0.502	0.365	0.515	4e-20
O24542	193	Auxin-induced protein 22D	N/A	no	0.837	0.777	0.341	1e-19
Q38822	189	Auxin-responsive protein	no	no	0.625	0.592	0.409	2e-19
Q38831	247	Auxin-responsive protein	no	no	0.491	0.356	0.452	5e-19

>sp|Q9M1R4|IAA30_ARATH Auxin-responsive protein IAA30 OS=Arabidopsis thaliana GN=IAA30 PE=2 SV=1

 Score =  152 bits (383), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 86/162 (53%), Positives = 105/162 (64%), Gaps = 16/162 (9%)

Query: 17  STQIRRNLSTDLRLGLSISASQQDDPFSLPSYLCIFNVSVGDDDQASDWPPTKPLIMRRA 76
           S+   RNLSTDLRLGLS  +S              +N   G D+   D       +M   
Sbjct: 24  SSSNTRNLSTDLRLGLSFGSSSGQ----------YYN---GGDNHEYDGVGAAEEMMIME 70

Query: 77  LEEEENEGSSATFFVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSV 136
            EE+    S  +F+VKV MEG+PIGRK+DLL+ +GYHDLI TLDYMF+ +I+W+E +   
Sbjct: 71  EEEQNECNSVGSFYVKVNMEGVPIGRKIDLLSLNGYHDLITTLDYMFNASILWAEEE--- 127

Query: 137 SAYSETCHVLTYEDKEGDWMMVGDVPWEMFLSTVRRLKITRA 178
              SE  HVLTY DKEGDWMMVGDVPWEMFLS+VRRLKI+RA
Sbjct: 128 DMCSEKSHVLTYADKEGDWMMVGDVPWEMFLSSVRRLKISRA 169

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.
Arabidopsis thaliana (taxid: 3702)

>sp|O24410|IAA20_ARATH Auxin-responsive protein IAA20 OS=Arabidopsis thaliana GN=IAA20 PE=2 SV=2

 Score =  144 bits (364), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 79/157 (50%), Positives = 100/157 (63%), Gaps = 13/157 (8%)

Query: 22  RNLSTDLRLGLSISASQQDDPFSLPSYLCIFNVSVGDDDQASDWPPTKPLIMRRALEEEE 81
           RNLSTDLRLGLS   S     F+      +   +V D +  +     +            
Sbjct: 28  RNLSTDLRLGLSFGTSSGTQYFNGGYGYSVAAPAVEDAEYVAAVEEEEENECN------- 80

Query: 82  NEGSSATFFVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSE 141
              S  +F+VKV MEG+PIGRK+DL++ +GY DLIRTLD+MF+ +I+W+E +      +E
Sbjct: 81  ---SVGSFYVKVNMEGVPIGRKIDLMSLNGYRDLIRTLDFMFNASILWAEEE---DMCNE 134

Query: 142 TCHVLTYEDKEGDWMMVGDVPWEMFLSTVRRLKITRA 178
             HVLTY DKEGDWMMVGDVPWEMFLSTVRRLKI+RA
Sbjct: 135 KSHVLTYADKEGDWMMVGDVPWEMFLSTVRRLKISRA 171

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H174|IAA31_ARATH Auxin-responsive protein IAA31 OS=Arabidopsis thaliana GN=IAA31 PE=2 SV=2

 Score =  124 bits (312), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/120 (55%), Positives = 74/120 (61%), Gaps = 16/120 (13%)

Query: 64  DWPPTKP-----LIMRRALEEEENEGSSATFFVKVYMEGIPIGRKLDLLAHDGYHDLIRT 118
           DWPP K      L  RR L      G   + FVKVYMEG+PIGRKLDL    GY  L+  
Sbjct: 47  DWPPIKSRLRDTLKGRRLL----RRGDDTSLFVKVYMEGVPIGRKLDLCVFSGYESLLEN 102

Query: 119 LDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVGDVPWEMFLSTVRRLKITRA 178
           L +MF T+II    D          HVLTYEDK+GDWMMVGD+PW+MFL TVRRLKITR 
Sbjct: 103 LSHMFDTSIICGNRD-------RKHHVLTYEDKDGDWMMVGDIPWDMFLETVRRLKITRP 155

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6Z5M0|IAA8_ORYSJ Auxin-responsive protein IAA8 OS=Oryza sativa subsp. japonica GN=IAA8 PE=2 SV=2

 Score =  117 bits (294), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 68/163 (41%), Positives = 89/163 (54%), Gaps = 20/163 (12%)

Query: 21  RRNL-STDLRLGLSISASQQDDPFSLPSYLCIFNVSVGDDDQASDWPPTKPLIMRRALEE 79
           RR+L STDLRLGL++S+    D               G++        T   +       
Sbjct: 50  RRSLISTDLRLGLTLSSVVHID---------------GNNPSTPRSSLTTATVTADRGGG 94

Query: 80  EENEGSSATFFVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAY 139
               G   + FVKVYMEG+PIGRKLDLL  DGY  L+  L  MF  +I +       +  
Sbjct: 95  GGGHGRRRSLFVKVYMEGVPIGRKLDLLPLDGYKGLVARLASMFRASITYHHCHRQFAVV 154

Query: 140 ----SETCHVLTYEDKEGDWMMVGDVPWEMFLSTVRRLKITRA 178
               ++  HVLTYED+EGDWMM GDVPWE+FL++V+RL+I RA
Sbjct: 155 GMKTNKVHHVLTYEDQEGDWMMAGDVPWELFLTSVKRLRIARA 197

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2ZRY8|IAA4_ORYSJ Auxin-responsive protein IAA4 OS=Oryza sativa subsp. japonica GN=IAA4 PE=2 SV=1

 Score =  113 bits (283), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 84/178 (47%), Positives = 108/178 (60%), Gaps = 14/178 (7%)

Query: 12  SSTESSTQIRRNLSTDLRLGLSISASQQDDPFSLPSYLCIFNVSVGDDDQAS----DWPP 67
           S+T S+   RR+LSTDLRLGLS+S S         +     + S+    + S    DWPP
Sbjct: 24  STTSSAATARRDLSTDLRLGLSLSTSSSSSLLQAAAAAAAADDSIPSTPRNSQVHADWPP 83

Query: 68  TKPLIMRRALEEEENEGSSA-----TFFVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYM 122
            KP  +R AL++    G        T FVKVYMEG+PIGRKLDLL  DGY  L+  L +M
Sbjct: 84  IKPF-LRSALQKASAAGGGGARRRRTLFVKVYMEGVPIGRKLDLLLLDGYDSLLIKLCHM 142

Query: 123 FSTNIIWS---EMDGSVSAYSETCHVLTYEDKEGDWMMVGDVPWEMFLSTVRRLKITR 177
           F T I ++   E    V    +  HVLTYED++GDWMMVGDVPWE+FLS+V++L+I R
Sbjct: 143 FKTPITYADVMECHQQVPG-QKAAHVLTYEDQDGDWMMVGDVPWELFLSSVKKLRIAR 199

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2WNM0|IAA4_ORYSI Auxin-responsive protein IAA4 OS=Oryza sativa subsp. indica GN=IAA4 PE=2 SV=1

 Score =  113 bits (283), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 84/178 (47%), Positives = 108/178 (60%), Gaps = 14/178 (7%)

Query: 12  SSTESSTQIRRNLSTDLRLGLSISASQQDDPFSLPSYLCIFNVSVGDDDQAS----DWPP 67
           S+T S+   RR+LSTDLRLGLS+S S         +     + S+    + S    DWPP
Sbjct: 24  STTSSAATARRDLSTDLRLGLSLSTSSSSSLLQAAAAAAAADDSIPSTPRNSQVHADWPP 83

Query: 68  TKPLIMRRALEEEENEGSSA-----TFFVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYM 122
            KP  +R AL++    G        T FVKVYMEG+PIGRKLDLL  DGY  L+  L +M
Sbjct: 84  IKPF-LRSALQKASAAGGGGARRRRTLFVKVYMEGVPIGRKLDLLLLDGYDSLLIKLCHM 142

Query: 123 FSTNIIWS---EMDGSVSAYSETCHVLTYEDKEGDWMMVGDVPWEMFLSTVRRLKITR 177
           F T I ++   E    V    +  HVLTYED++GDWMMVGDVPWE+FLS+V++L+I R
Sbjct: 143 FKTPITYADVMECHQQVPG-QKAAHVLTYEDQDGDWMMVGDVPWELFLSSVKKLRIAR 199

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q38829|IAA11_ARATH Auxin-responsive protein IAA11 OS=Arabidopsis thaliana GN=IAA11 PE=1 SV=1

 Score = 97.4 bits (241), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 51/99 (51%), Positives = 63/99 (63%), Gaps = 9/99 (9%)

Query: 88  TFFVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWS---EMDGSVSAY----- 139
           + FVKV M+GIPIGRK+DL AH  Y  L  TL+ MF    + S   E DG +        
Sbjct: 136 SMFVKVTMDGIPIGRKIDLNAHKCYESLSNTLEEMFLKPKLGSRTLETDGHMETPVKILP 195

Query: 140 -SETCHVLTYEDKEGDWMMVGDVPWEMFLSTVRRLKITR 177
              +  VLTYEDKEGDWM+VGDVPW MF+ +VRRL+I +
Sbjct: 196 DGSSGLVLTYEDKEGDWMLVGDVPWGMFIGSVRRLRIMK 234

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|O24542|AX22D_VIGRR Auxin-induced protein 22D OS=Vigna radiata var. radiata GN=AUX22D PE=2 SV=1

 Score = 95.9 bits (237), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 89/173 (51%), Gaps = 23/173 (13%)

Query: 25  STDLRLGLSIS------ASQQDDPFSLPSYLCIFNVSVGDD------------DQASDWP 66
           +T+LRLGL  S      A+ + +  S P      ++S G D             Q   WP
Sbjct: 16  ATELRLGLPGSDEPEKRATARSNKRSSPEASDEESISNGSDVTKEDNVVPPAKAQVVGWP 75

Query: 67  PTKPLIMRRALEEEENEGSSATFFVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTN 126
           P +        +++E E      +VKV M G P  RK+DL  +  Y +L++ L+ MF   
Sbjct: 76  PIRSYRKNNVQQKKEEESEGNGMYVKVSMAGAPYLRKIDLKVYKSYPELLKALENMFKCI 135

Query: 127 I-IWSEMDGSVSAYSETCHVLTYEDKEGDWMMVGDVPWEMFLSTVRRLKITRA 178
              +SE +G    Y+ + +  TYEDK+GDWM+VGDVPW MF+S+ +RL+I + 
Sbjct: 136 FGEYSEREG----YNGSEYAPTYEDKDGDWMLVGDVPWNMFVSSCKRLRIMKG 184

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Vigna radiata var. radiata (taxid: 3916)

>sp|Q38822|IAA3_ARATH Auxin-responsive protein IAA3 OS=Arabidopsis thaliana GN=IAA3 PE=1 SV=1

 Score = 95.1 bits (235), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/122 (40%), Positives = 73/122 (59%), Gaps = 10/122 (8%)

Query: 61  QASDWPPTKPLI---MRRALEEEENEGSSATFFVKVYMEGIPIGRKLDLLAHDGYHDLIR 117
           Q   WPP +      ++    E E+EG     +VKV M+G P  RK+DL  + GY +L++
Sbjct: 64  QIVGWPPVRSYRKNNIQSKKNESEHEGQG--IYVKVSMDGAPYLRKIDLSCYKGYSELLK 121

Query: 118 TLDYMFSTNI-IWSEMDGSVSAYSETCHVLTYEDKEGDWMMVGDVPWEMFLSTVRRLKIT 176
            L+ MF  ++  + E DG    Y  +  V TYEDK+GDWM++GDVPWEMF+ T +RL+I 
Sbjct: 122 ALEVMFKFSVGEYFERDG----YKGSDFVPTYEDKDGDWMLIGDVPWEMFICTCKRLRIM 177

Query: 177 RA 178
           + 
Sbjct: 178 KG 179

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38831|IAA13_ARATH Auxin-responsive protein IAA13 OS=Arabidopsis thaliana GN=IAA13 PE=1 SV=2

 Score = 94.0 bits (232), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 48/106 (45%), Positives = 64/106 (60%), Gaps = 18/106 (16%)

Query: 84  GSSATFFVKVYMEGIPIGRKLDLLAHDGYHDLIRTL-DYMFSTNIIWSEMDGSVSAYSET 142
           G     F+KV M+G+ IGRK+DL AH  Y +L +TL D  F TN       G+V   S+ 
Sbjct: 125 GKVQVGFIKVNMDGVAIGRKVDLNAHSSYENLAQTLEDMFFRTN------PGTVGLTSQF 178

Query: 143 CH-----------VLTYEDKEGDWMMVGDVPWEMFLSTVRRLKITR 177
                        VLTYEDKEGDWM+VGDVPW MF+++V+RL++ +
Sbjct: 179 TKPLRLLDGSSEFVLTYEDKEGDWMLVGDVPWRMFINSVKRLRVMK 224

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
20269055	176	aux/IAA protein [Populus tremula x Popul	0.854	0.869	0.698	3e-58
429326568	175	hypothetical protein [Populus tomentosa]	0.782	0.8	0.711	9e-54
224128137	175	predicted protein [Populus trichocarpa]	0.782	0.8	0.705	1e-53
255548235	175	Auxin-responsive protein IAA20, putative	0.787	0.805	0.666	2e-52
225437764	175	PREDICTED: auxin-responsive protein IAA4	0.849	0.868	0.634	3e-51
224068723	174	predicted protein [Populus trichocarpa]	0.849	0.873	0.615	3e-48
20269053	174	aux/IAA protein [Populus tremula x Popul	0.837	0.862	0.622	3e-48
169643254	114	aux/IAA protein [Populus alba]	0.636	1.0	0.674	3e-41
356533499	177	PREDICTED: auxin-responsive protein IAA3	0.871	0.881	0.528	6e-40
147859763	181	hypothetical protein VITISV_035323 [Viti	0.770	0.762	0.539	1e-39

>gi|20269055|emb|CAC84708.1| aux/IAA protein [Populus tremula x Populus tremuloides]

 Score =  229 bits (584), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 118/169 (69%), Positives = 137/169 (81%), Gaps = 16/169 (9%)

Query: 11  SSSTESS-TQIRRNLSTDLRLGLSISASQQDDPFSLPSYLCIFNVSVGDDDQASDWPPTK 69
           S ST+SS +Q++++LSTDLRLGLSISASQQ++P S PS           D Q SDWPP K
Sbjct: 20  SVSTKSSLSQLKKDLSTDLRLGLSISASQQENP-STPS-----------DQQLSDWPPIK 67

Query: 70  PLIMRRALEEEENEGSSATFFVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIW 129
           PL + +ALE EENE SSATFFVKVYMEGIPIGRKL+LLAHDGYHDLI+TLD MF+T+I+W
Sbjct: 68  PLNLSKALESEENECSSATFFVKVYMEGIPIGRKLNLLAHDGYHDLIQTLDQMFNTSILW 127

Query: 130 SEMDGSVSAYSETCHVLTYEDKEGDWMMVGDVPWEMFLSTVRRLKITRA 178
            EMD     +S  CHVLTYEDKEGDW++VGDVPWEMFL +VRRLKITRA
Sbjct: 128 PEMD---IEHSGQCHVLTYEDKEGDWLIVGDVPWEMFLPSVRRLKITRA 173

Source: Populus tremula x Populus tremuloides

Species: Populus tremula x Populus tremuloides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|429326568|gb|AFZ78624.1| hypothetical protein [Populus tomentosa]

 Score =  214 bits (546), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 111/156 (71%), Positives = 125/156 (80%), Gaps = 16/156 (10%)

Query: 23  NLSTDLRLGLSISASQQDDPFSLPSYLCIFNVSVGDDDQASDWPPTKPLIMRRALEEEEN 82
           +LSTDLRLGLSISASQQ++P S PS           D Q SDWPP KP  + +ALE EEN
Sbjct: 33  DLSTDLRLGLSISASQQENP-STPS-----------DQQLSDWPPIKP-SLSKALESEEN 79

Query: 83  EGSSATFFVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSET 142
           E SSATFFVKVYMEGIPIGRKL+LLAHDGYHDLI+TLD MF+T+I+W EMD     +S  
Sbjct: 80  ECSSATFFVKVYMEGIPIGRKLNLLAHDGYHDLIQTLDQMFNTSILWPEMD---IEHSGQ 136

Query: 143 CHVLTYEDKEGDWMMVGDVPWEMFLSTVRRLKITRA 178
           CHVLTYEDKEGDW++VGDVPWEMFL +VRRLKITRA
Sbjct: 137 CHVLTYEDKEGDWLIVGDVPWEMFLPSVRRLKITRA 172

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128137|ref|XP_002320253.1| predicted protein [Populus trichocarpa] gi|222861026|gb|EEE98568.1| predicted protein [Populus trichocarpa]

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 110/156 (70%), Positives = 124/156 (79%), Gaps = 16/156 (10%)

Query: 23  NLSTDLRLGLSISASQQDDPFSLPSYLCIFNVSVGDDDQASDWPPTKPLIMRRALEEEEN 82
           +LSTDLRLGLSIS SQQ++P S PS           D Q SDWPP KP  +R+AL  EEN
Sbjct: 33  DLSTDLRLGLSISTSQQENP-STPS-----------DQQLSDWPPIKPF-LRKALASEEN 79

Query: 83  EGSSATFFVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSET 142
           E SSATFFVKVYMEGIPIGRKL+LLAHDGYHDLI+TLD MF+T+I+W EMD     +S  
Sbjct: 80  ECSSATFFVKVYMEGIPIGRKLNLLAHDGYHDLIQTLDQMFNTSILWPEMD---IEHSGQ 136

Query: 143 CHVLTYEDKEGDWMMVGDVPWEMFLSTVRRLKITRA 178
           CHVLTYEDKEGDW++VGDVPWEMFL +VRRLKITRA
Sbjct: 137 CHVLTYEDKEGDWLIVGDVPWEMFLPSVRRLKITRA 172

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548235|ref|XP_002515174.1| Auxin-responsive protein IAA20, putative [Ricinus communis] gi|223545654|gb|EEF47158.1| Auxin-responsive protein IAA20, putative [Ricinus communis]

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 106/159 (66%), Positives = 122/159 (76%), Gaps = 18/159 (11%)

Query: 21  RRNLSTDLRLGLSISASQQDDPF-SLPSYLCIFNVSVGDDDQASDWPPTKPLIMRRALEE 79
            R+LSTDLRLGLSIS SQ  + + S+PS               SDWPP KPL+ +    E
Sbjct: 32  NRDLSTDLRLGLSISTSQHPNLYNSIPS--------------ESDWPPIKPLLKKALAAE 77

Query: 80  EENEGSSATFFVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAY 139
           EENE +SATF+VKVYMEGIPIGRKLDLLAHDGYHDLI TLD+MFSTNI+W+EMD      
Sbjct: 78  EENECNSATFYVKVYMEGIPIGRKLDLLAHDGYHDLIATLDHMFSTNILWAEMD---CEN 134

Query: 140 SETCHVLTYEDKEGDWMMVGDVPWEMFLSTVRRLKITRA 178
            E CHVLTYEDKEGDW++VGDVPWEMFLS+V+RLKIT+A
Sbjct: 135 FEQCHVLTYEDKEGDWLIVGDVPWEMFLSSVKRLKITKA 173

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437764|ref|XP_002281145.1| PREDICTED: auxin-responsive protein IAA4 [Vitis vinifera] gi|297744081|emb|CBI37051.3| unnamed protein product [Vitis vinifera]

 Score =  206 bits (524), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 106/167 (63%), Positives = 124/167 (74%), Gaps = 15/167 (8%)

Query: 12  SSTESSTQIRRNLSTDLRLGLSISASQQDDPFSLPSYLCIFNVSVGDDDQASDWPPTKPL 71
           SS  S  +++R+LSTDL LGLSIS S      S P             +Q SDWPP K L
Sbjct: 21  SSASSFPRLKRDLSTDLSLGLSISTSDHHYCPSTPR------------EQQSDWPPIKTL 68

Query: 72  IMRRALEEEENEGSSATFFVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSE 131
            +R+AL  E N+ + ATFFVKVYMEGIPIGRKLDL AHDGYH LIRTLD+MFST I+W+E
Sbjct: 69  -LRKALAGEGNKCNDATFFVKVYMEGIPIGRKLDLFAHDGYHALIRTLDHMFSTTILWAE 127

Query: 132 MDGSVSAYSETCHVLTYEDKEGDWMMVGDVPWEMFLSTVRRLKITRA 178
           +DG +  +SE CHVLTYEDKEGDWMMVGDVPWE+FL+TV+RLKITR 
Sbjct: 128 VDGVL--HSEKCHVLTYEDKEGDWMMVGDVPWELFLTTVKRLKITRV 172

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068723|ref|XP_002302809.1| predicted protein [Populus trichocarpa] gi|222844535|gb|EEE82082.1| predicted protein [Populus trichocarpa]

 Score =  196 bits (499), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 104/169 (61%), Positives = 123/169 (72%), Gaps = 17/169 (10%)

Query: 10  SSSSTESSTQIRRNLSTDLRLGLSISASQQDDPFSLPSYLCIFNVSVGDDDQASDWPPTK 69
           S S   S   ++R+LSTDLRLGL IS S+QD+P S PS            +Q  DWPP K
Sbjct: 20  SVSGESSFPHVKRDLSTDLRLGLGISTSRQDNP-STPS------------EQLLDWPPIK 66

Query: 70  PLIMRRALEEEENEGSSATFFVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIW 129
           P    +A+  EENE  S+T FVKVYMEGI IGRKL+LLAHDGYHDLI+TLD MF+T+I+W
Sbjct: 67  P-SPGKAVTSEENECCSSTLFVKVYMEGIQIGRKLNLLAHDGYHDLIQTLDEMFNTSILW 125

Query: 130 SEMDGSVSAYSETCHVLTYEDKEGDWMMVGDVPWEMFLSTVRRLKITRA 178
            EMD     +S  CHVLTYEDKEGDW++VGDVPWE+FL +VRRLKITRA
Sbjct: 126 PEMD---VEHSGKCHVLTYEDKEGDWLIVGDVPWEVFLPSVRRLKITRA 171

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20269053|emb|CAC84707.1| aux/IAA protein [Populus tremula x Populus tremuloides]

 Score =  196 bits (498), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 104/167 (62%), Positives = 123/167 (73%), Gaps = 17/167 (10%)

Query: 12  SSTESSTQIRRNLSTDLRLGLSISASQQDDPFSLPSYLCIFNVSVGDDDQASDWPPTKPL 71
           S   S  Q +R+LSTDLRLGL IS S+QD+P S PS            +Q  DWPP KP 
Sbjct: 22  SGESSFPQGKRDLSTDLRLGLGISTSRQDNP-STPS------------EQLLDWPPIKP- 67

Query: 72  IMRRALEEEENEGSSATFFVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSE 131
              +A+  EENE SS+T FVKVYMEGI IGRKL+LLAHDGYHDLI+TLD MF+T+I+W E
Sbjct: 68  SPGKAVTSEENEYSSSTLFVKVYMEGIQIGRKLNLLAHDGYHDLIQTLDQMFNTSILWPE 127

Query: 132 MDGSVSAYSETCHVLTYEDKEGDWMMVGDVPWEMFLSTVRRLKITRA 178
           MD     +S  CHVLTYED+EGDW++VGDVPWE+FL +VRRLKITRA
Sbjct: 128 MD---VEHSGKCHVLTYEDQEGDWLIVGDVPWEVFLPSVRRLKITRA 171

Source: Populus tremula x Populus tremuloides

Species: Populus tremula x Populus tremuloides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|169643254|emb|CAQ16125.1| aux/IAA protein [Populus alba]

 Score =  173 bits (438), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 87/129 (67%), Positives = 99/129 (76%), Gaps = 15/129 (11%)

Query: 36  ASQQDDPFSLPSYLCIFNVSVGDDDQASDWPPTKPLIMRRALEEEENEGSSATFFVKVYM 95
           ASQQ++P S PS           D Q SDWPP KP  + +ALE EENE SSATFFVKVYM
Sbjct: 1   ASQQENP-STPS-----------DQQLSDWPPIKPPFLSKALESEENECSSATFFVKVYM 48

Query: 96  EGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDW 155
           EGIPIGRKL+LLAHDGYHDLI+TLD MF+T+I+W EMD     +S  CHVLTYEDKEGDW
Sbjct: 49  EGIPIGRKLNLLAHDGYHDLIQTLDQMFNTSILWPEMD---IEHSGQCHVLTYEDKEGDW 105

Query: 156 MMVGDVPWE 164
           ++VGDVPWE
Sbjct: 106 LIVGDVPWE 114

Source: Populus alba

Species: Populus alba

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533499|ref|XP_003535301.1| PREDICTED: auxin-responsive protein IAA30-like [Glycine max]

 Score =  169 bits (427), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 94/178 (52%), Positives = 114/178 (64%), Gaps = 22/178 (12%)

Query: 4   ARAASCSSSSTESSTQIRRNLSTDLRLGLSISASQQDDPFSLPSYLCIFNVSVGDDDQAS 63
            R  S S++S+ +    + +L TDLRLGLS+SA+Q                 VG      
Sbjct: 15  CRNPSNSTASSLTHQHSQDHLRTDLRLGLSLSATQH----------------VGSSSSGG 58

Query: 64  DWPPTKP-LIMRRALEEEENEGSSAT-FFVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDY 121
            W P +P LI   +   E N+ S  T FFVKVYMEGIPIGRKL+LLAHDGYH+L++TL+ 
Sbjct: 59  HWQPMQPHLISSFSQATEVNDCSDHTSFFVKVYMEGIPIGRKLNLLAHDGYHELVKTLEQ 118

Query: 122 MFSTNIIW-SEMDGSVSAYSETCHVLTYEDKEGDWMMVGDVPWEMFLSTVRRLKITRA 178
           MF T I+W +EMDG      E CHVLTYED EGD +MVGDVPWEMFLS V+RLKITR 
Sbjct: 119 MFDTTILWGTEMDG---VQPERCHVLTYEDGEGDLIMVGDVPWEMFLSAVKRLKITRV 173

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147859763|emb|CAN83139.1| hypothetical protein VITISV_035323 [Vitis vinifera]

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 95/176 (53%), Positives = 110/176 (62%), Gaps = 38/176 (21%)

Query: 12  SSTESSTQIRRNLSTDLRLGLSISASQQDDPFSLPSYLCIFNVSVGDDDQASDWPPTKPL 71
           SS  S  +++R+LSTDL LGLSIS S      S P             +Q SDWPP K L
Sbjct: 21  SSASSFPRLKRDLSTDLSLGLSISTSDHHYCPSTPR------------EQQSDWPPIKTL 68

Query: 72  IMRRALEEEENEGSSATFFVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIW-- 129
            +R+AL  E N+ + ATFFVKVYMEGIPIGRKLDL AHDGYH LIRTLD+MFST I+   
Sbjct: 69  -LRKALAGEGNKCNDATFFVKVYMEGIPIGRKLDLFAHDGYHALIRTLDHMFSTTILCKS 127

Query: 130 ---------------------SEMDGSVSAYSETCHVLTYEDKEGDWMMVGDVPWE 164
                                +E+DG +  +SE CHVLTYEDKEGDWMMVGDVPWE
Sbjct: 128 HIFLLMCSSQSEIINDSFQAGAEVDGVL--HSEKCHVLTYEDKEGDWMMVGDVPWE 181

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
TAIR|locus:2098023	172	IAA30 "indole-3-acetic acid in	0.782	0.813	0.550	7.2e-36
TAIR|locus:2041324	175	IAA20 "indole-3-acetic acid in	0.793	0.811	0.566	1.5e-35
TAIR|locus:2090527	158	IAA31 "indole-3-acetic acid in	0.592	0.670	0.551	3.9e-28
UNIPROTKB|Q6Z5M0	205	IAA8 "Auxin-responsive protein	0.530	0.463	0.535	3.8e-23
UNIPROTKB|Q5NB25	263	IAA3 "Auxin-responsive protein	0.541	0.368	0.42	1.9e-20
TAIR|locus:2018379	189	SHY2 "SHORT HYPOCOTYL 2" [Arab	0.620	0.587	0.413	7.2e-20
UNIPROTKB|Q75GB1	257	IAA17 "Auxin-responsive protei	0.575	0.400	0.419	1.2e-19
UNIPROTKB|P49679	189	IAA4/5 "Auxin-induced protein	0.581	0.550	0.421	5.1e-19
TAIR|locus:2129910	168	IAA1 "indole-3-acetic acid ind	0.832	0.886	0.358	8.3e-19
TAIR|locus:2139890	302	IAA11 "indole-3-acetic acid in	0.502	0.298	0.515	8.3e-19

TAIR|locus:2098023 IAA30 "indole-3-acetic acid inducible 30" [Arabidopsis thaliana (taxid:3702)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 87/158 (55%), Positives = 110/158 (69%)

Query:    22 RNLSTDLRLGLSISASQQDDPFSLPSYLCIFNVSVGDDDQASDWPPTKPLIMRRALEEEE 81
             RNLSTDLRLGLS  +S          Y   +N   GD+ +       + +++    EEE+
Sbjct:    29 RNLSTDLRLGLSFGSSSGQ-------Y---YNG--GDNHEYDGVGAAEEMMIME--EEEQ 74

Query:    82 NEGSSA-TFFVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYS 140
             NE +S  +F+VKV MEG+PIGRK+DLL+ +GYHDLI TLDYMF+ +I+W+E +   S   
Sbjct:    75 NECNSVGSFYVKVNMEGVPIGRKIDLLSLNGYHDLITTLDYMFNASILWAEEEDMCS--- 131

Query:   141 ETCHVLTYEDKEGDWMMVGDVPWEMFLSTVRRLKITRA 178
             E  HVLTY DKEGDWMMVGDVPWEMFLS+VRRLKI+RA
Sbjct:   132 EKSHVLTYADKEGDWMMVGDVPWEMFLSSVRRLKISRA 169

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=IEP;RCA;TAS

GO:0009630 "gravitropism" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2041324 IAA20 "indole-3-acetic acid inducible 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 90/159 (56%), Positives = 108/159 (67%)

Query:    22 RNLSTDLRLGLSISASQQDDPFSLPSYLCIFNVSVGDDDQASDWPPTKPLIMRRALEEEE 81
             RNLSTDLRLGLS   S      S   Y   FN   G    A   P  +      A+EEEE
Sbjct:    28 RNLSTDLRLGLSFGTS------SGTQY---FNGGYGYSVAA---PAVEDAEYVAAVEEEE 75

Query:    82 -NEGSSA-TFFVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAY 139
              NE +S  +F+VKV MEG+PIGRK+DL++ +GY DLIRTLD+MF+ +I+W+E +   +  
Sbjct:    76 ENECNSVGSFYVKVNMEGVPIGRKIDLMSLNGYRDLIRTLDFMFNASILWAEEEDMCN-- 133

Query:   140 SETCHVLTYEDKEGDWMMVGDVPWEMFLSTVRRLKITRA 178
              E  HVLTY DKEGDWMMVGDVPWEMFLSTVRRLKI+RA
Sbjct:   134 -EKSHVLTYADKEGDWMMVGDVPWEMFLSTVRRLKISRA 171

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=IEP;TAS

GO:0009630 "gravitropism" evidence=IMP

GO:0009647 "skotomorphogenesis" evidence=IMP

GO:0010588 "cotyledon vascular tissue pattern formation" evidence=IMP

GO:0048364 "root development" evidence=IMP

TAIR|locus:2090527 IAA31 "indole-3-acetic acid inducible 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 64/116 (55%), Positives = 74/116 (63%)

Query:    64 DWPPTKPLIMRRALEEEE--NEGSSATFFVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDY 121
             DWPP K  + R  L+       G   + FVKVYMEG+PIGRKLDL    GY  L+  L +
Sbjct:    47 DWPPIKSRL-RDTLKGRRLLRRGDDTSLFVKVYMEGVPIGRKLDLCVFSGYESLLENLSH 105

Query:   122 MFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVGDVPWEMFLSTVRRLKITR 177
             MF T+II    D          HVLTYEDK+GDWMMVGD+PW+MFL TVRRLKITR
Sbjct:   106 MFDTSIICGNRD-------RKHHVLTYEDKDGDWMMVGDIPWDMFLETVRRLKITR 154

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=TAS

GO:0009630 "gravitropism" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

UNIPROTKB|Q6Z5M0 IAA8 "Auxin-responsive protein IAA8" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 53/99 (53%), Positives = 67/99 (67%)

Query:    84 GSSATFFVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAY---- 139
             G   + FVKVYMEG+PIGRKLDLL  DGY  L+  L  MF  +I +       +      
Sbjct:    99 GRRRSLFVKVYMEGVPIGRKLDLLPLDGYKGLVARLASMFRASITYHHCHRQFAVVGMKT 158

Query:   140 SETCHVLTYEDKEGDWMMVGDVPWEMFLSTVRRLKITRA 178
             ++  HVLTYED+EGDWMM GDVPWE+FL++V+RL+I RA
Sbjct:   159 NKVHHVLTYEDQEGDWMMAGDVPWELFLTSVKRLRIARA 197

GO:0009733 "response to auxin stimulus" evidence=ISS

UNIPROTKB|Q5NB25 IAA3 "Auxin-responsive protein IAA3" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 195 (73.7 bits), Expect = 1.9e-20, Sum P(3) = 1.9e-20
 Identities = 42/100 (42%), Positives = 59/100 (59%)

Query:    78 EEEENEGSSATFFVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVS 137
             E+ + +      +VKV M+G P  RK+DL  +  Y D+   L+ MF   I +S       
Sbjct:   148 EDVDAKQGQGFLYVKVSMDGAPYLRKVDLKTYKNYKDMSLGLEKMF---IGFSTGKEGAE 204

Query:   138 AYSETCHVLTYEDKEGDWMMVGDVPWEMFLSTVRRLKITR 177
                +  +VLTYEDK+GDWM+VGDVPWEMF  + RRL+I +
Sbjct:   205 NQKDGEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMK 244

GO:0009733 "response to auxin stimulus" evidence=IC

TAIR|locus:2018379 SHY2 "SHORT HYPOCOTYL 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 50/121 (41%), Positives = 73/121 (60%)

Query:    61 QASDWPPTKPLI---MRRALEEEENEGSSATFFVKVYMEGIPIGRKLDLLAHDGYHDLIR 117
             Q   WPP +      ++    E E+EG     +VKV M+G P  RK+DL  + GY +L++
Sbjct:    64 QIVGWPPVRSYRKNNIQSKKNESEHEGQG--IYVKVSMDGAPYLRKIDLSCYKGYSELLK 121

Query:   118 TLDYMFSTNI-IWSEMDGSVSAYSETCHVLTYEDKEGDWMMVGDVPWEMFLSTVRRLKIT 176
              L+ MF  ++  + E DG    Y  +  V TYEDK+GDWM++GDVPWEMF+ T +RL+I 
Sbjct:   122 ALEVMFKFSVGEYFERDG----YKGSDFVPTYEDKDGDWMLIGDVPWEMFICTCKRLRIM 177

Query:   177 R 177
             +
Sbjct:   178 K 178

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

UNIPROTKB|Q75GB1 IAA17 "Auxin-responsive protein IAA17" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 213 (80.0 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
 Identities = 44/105 (41%), Positives = 64/105 (60%)

Query:    73 MRRALEEEENEGSSATFFVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEM 132
             ++ + E+ E +      +VKV M+G P  RK+DL  +  Y DL   L+ MF      +  
Sbjct:   136 LKSSKEDAEAKQGQGFLYVKVSMDGAPYLRKVDLKTYKNYKDLSTALEKMFIG--FTTGK 193

Query:   133 DGSVSAYSETCHVLTYEDKEGDWMMVGDVPWEMFLSTVRRLKITR 177
             DG   +  +  +VLTYEDK+GDWM+VGDVPWEMF ++ RRL+I +
Sbjct:   194 DGLSESRKDGEYVLTYEDKDGDWMLVGDVPWEMFANSCRRLRIMK 238

GO:0009733 "response to auxin stimulus" evidence=ISS

UNIPROTKB|P49679 IAA4/5 "Auxin-induced protein IAA4" [Pisum sativum (taxid:3888)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 48/114 (42%), Positives = 72/114 (63%)

Query:    65 WPPTKPLIMRRALEEEENEGSSATFFVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFS 124
             WPP +    + +L E +  G     FVKV M+G P  RK+DL  + GY +L++ L+ MF 
Sbjct:    74 WPPIRSY-RKNSLHEADVGG----IFVKVSMDGAPYLRKIDLRVYGGYSELLKALETMFK 128

Query:   125 TNI-IWSEMDGSVSAYSETCHVLTYEDKEGDWMMVGDVPWEMFLSTVRRLKITR 177
               I  +SE +G    Y  + +  TYEDK+GDWM+VGDVPW+MF+++ +RL+I +
Sbjct:   129 LTIGEYSEREG----YKGSEYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMK 178

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2129910 IAA1 "indole-3-acetic acid inducible" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 57/159 (35%), Positives = 85/159 (53%)

Query:    23 NLS-TDLRLGLSISASQQDDPFSLPSYLCIFNVSVGDDDQASDWPPTKPLIMR--RALEE 79
             NL  T+LRLGL    +Q++    L            D  + S  PP K  I+        
Sbjct:     8 NLKDTELRLGLP--GAQEEQQLELSCVRSNNKRKNNDSTEESAPPPAKTQIVGWPPVRSN 65

Query:    80 EENEGSSATFFVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNI-IWSEMDGSVSA 138
              +N  +    +VKV M+G P  RK+DL  +  Y +L++ L+ MF   +  +SE +G    
Sbjct:    66 RKNNNNKNVSYVKVSMDGAPYLRKIDLKMYKNYPELLKALENMFKFTVGEYSEREG---- 121

Query:   139 YSETCHVLTYEDKEGDWMMVGDVPWEMFLSTVRRLKITR 177
             Y  +  V TYEDK+GDWM+VGDVPW+MF S+ ++L+I +
Sbjct:   122 YKGSGFVPTYEDKDGDWMLVGDVPWDMFSSSCQKLRIMK 160

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0042802 "identical protein binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0009733 "response to auxin stimulus" evidence=IEP;RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

TAIR|locus:2139890 IAA11 "indole-3-acetic acid inducible 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 51/99 (51%), Positives = 63/99 (63%)

Query:    88 TFFVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWS---EMDGSVSAYSETCH 144
             + FVKV M+GIPIGRK+DL AH  Y  L  TL+ MF    + S   E DG +    +   
Sbjct:   136 SMFVKVTMDGIPIGRKIDLNAHKCYESLSNTLEEMFLKPKLGSRTLETDGHMETPVKILP 195

Query:   145 ------VLTYEDKEGDWMMVGDVPWEMFLSTVRRLKITR 177
                   VLTYEDKEGDWM+VGDVPW MF+ +VRRL+I +
Sbjct:   196 DGSSGLVLTYEDKEGDWMLVGDVPWGMFIGSVRRLRIMK 234

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009506 "plasmodesma" evidence=IDA

GO:0010583 "response to cyclopentenone" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M1R4	IAA30_ARATH	No assigned EC number	0.5308	0.8156	0.8488	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	grail3.0061005101	hypothetical protein (175 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.I.8677.1	annotation not avaliable (139 aa)							•		0.700
	gw1.VI.2253.1	cytokinin oxidase (EC-1.5.99.12) (471 aa)							•		0.510
	GA20ox2-1	gibberellin 20-oxidase (EC-1.14.11.12) (366 aa)							•		0.510
	HB5	SubName- Full=Class III HD-Zip protein 5; (851 aa)							•		0.510
	GA2ox6	gibberellin 2-oxidase (332 aa)							•		0.510
	HB6	SubName- Full=Class III HD-Zip protein 6; (837 aa)							•		0.510
	fgenesh4_pm.C_scaffold_66000095	hypothetical protein (349 aa)							•		0.508
	MYB020	hypothetical protein (109 aa)							•		0.507
	gw1.III.864.1	annotation not avaliable (313 aa)							•		0.507
	NAC105	NAC domain protein, IPR003441 (310 aa)							•		0.507

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	179
pfam02309	188	pfam02309, AUX_IAA, AUX/IAA family	1e-34

>gnl|CDD|216968 pfam02309, AUX_IAA, AUX/IAA family

 Score =  119 bits (301), Expect = 1e-34
 Identities = 48/119 (40%), Positives = 69/119 (57%), Gaps = 12/119 (10%)

Query: 61  QASDWPPTKPLIMRRALEEEENEGSSATFFVKVYMEGIPIGRKLDLLAHDGYHDLIRTLD 120
           Q   WPP +    + +L E+++       +VKV M+G P  RK+DL  +  Y +L   L+
Sbjct: 69  QVVGWPPVRS-YRKNSLREKKSGS-----YVKVSMDGAPYLRKVDLKMYKSYDELSSALE 122

Query: 121 YMFSTNII--WSEMDGSVSAYSETCHVLTYEDKEGDWMMVGDVPWEMFLSTVRRLKITR 177
            MFS   I     +D      SE  +V TYEDK+GDWM+VGDVPWEMF+ + +RL+I +
Sbjct: 123 KMFSCFTIGESGLLDLLNG--SE--YVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMK 177

Transcription of the AUX/IAA family of genes is rapidly induced by the plant hormone auxin. Some members of this family are longer and contain an N terminal DNA binding domain. The function of this region is uncertain. Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	179
PF02309	215	AUX_IAA: AUX/IAA family; InterPro: IPR003311 The A	100.0
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	97.66
cd06398	91	PB1_Joka2 The PB1 domain is present in the Nicotia	97.29
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	97.28
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	97.26
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	97.18
cd06396	81	PB1_NBR1 The PB1 domain is an essential part of NB	96.86
cd06401	81	PB1_TFG The PB1 domain found in TFG protein, an on	96.74
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	96.48
cd06403	80	PB1_Par6 The PB1 domain is an essential part of Pa	96.17
cd06402	87	PB1_p62 The PB1 domain is an essential part of p62	96.01
cd06404	83	PB1_aPKC PB1 domain is an essential modular domain	95.62
cd06397	82	PB1_UP1 Uncharacterized protein 1. The PB1 domain	95.47
cd06408	86	PB1_NoxR The PB1 domain is present in the Epichloe	93.53
cd06399	92	PB1_P40 The PB1 domain is essential part of the p4	82.03

>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []

Probab=100.00  E-value=3.9e-51  Score=340.95  Aligned_cols=118  Identities=45%  Similarity=0.826  Sum_probs=5.9

Q ss_pred             CCCcccCCCCCchhhhhhhhhhhhhcCCCccceEEEEecCcccceeeecCCCCCHHHHHHHHHHhhcccccc---cc-c-
Q 035700           58 DDDQASDWPPTKPLIMRRALEEEENEGSSATFFVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIW---SE-M-  132 (179)
Q Consensus        58 ~~~QvvgWPPvrs~~~r~~l~~~~~~~~~~~~~VKV~MdG~~igRkVDL~~~~sY~eL~~~Le~MF~~~~~~---~e-~-  132 (179)
                      .++|+||||||++| +++.+....  ....+.||||+|||+||||||||++|+||++|+.+|++||.++...   +. . 
T Consensus        82 ~~~~~vgwpp~~s~-r~n~~~~~~--~~~~~~~vKV~mdG~~igRkVDL~~~~sY~~L~~~L~~MF~~~~i~~~~~~~~~  158 (215)
T PF02309_consen   82 SKAQVVGWPPVRSF-RKNSLSEKQ--SSSSRSYVKVNMDGVPIGRKVDLSAYSSYEELSSALEKMFSCFSIEQCGSHGLN  158 (215)
T ss_dssp             ----BTTBS----S------------------------------------------------------------------
T ss_pred             ccccccCCCccccc-ccccccccc--cccCCceeEEEecCcccceecCHHHhhCHHHHHHHHHHhcCCCCcccccccccc
Confidence            46899999999999 666655222  2335899999999999999999999999999999999999543211   00 0 


Q ss_pred             -CCCCCCCCCCceEEEEEeCCCCeEEecCcChhHHhhccceeEEeec
Q 035700          133 -DGSVSAYSETCHVLTYEDKEGDWMMVGDVPWEMFLSTVRRLKITRA  178 (179)
Q Consensus       133 -~g~~~~~~~~~~vl~YeD~eGD~mLVGDvPW~~Fv~svKRLrI~~~  178 (179)
                       .+.....++++|+|||||+||||||||||||+|||++|||||||+.
T Consensus       159 ~~~~~~~~~~~~~~l~Y~D~egd~mlvGD~PW~~F~~~vkRl~I~~~  205 (215)
T PF02309_consen  159 ESGLLDLLNGSEYVLVYEDKEGDWMLVGDVPWEEFVKSVKRLRIMKS  205 (215)
T ss_dssp             -----------------------------------------------
T ss_pred             chhhccccCCcceeEEEECCCCCEEEecCCCHHHHHHHhhccEEecH
Confidence             0112234567999999999999999999999999999999999974

The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=97.66  E-value=0.00019  Score=50.50  Aligned_cols=68  Identities=24%  Similarity=0.341  Sum_probs=55.3

Q ss_pred             eEEEEecCcccceeeecCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEec-CcChhHHhh
Q 035700           90 FVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVG-DVPWEMFLS  168 (179)
Q Consensus        90 ~VKV~MdG~~igRkVDL~~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLVG-DvPW~~Fv~  168 (179)
                      -||+...|. +=|.+.+..--+|++|...+++.|+..              ...+.+.|.|.||||..+- |.=|++.++
T Consensus         3 ~vK~~~~~~-~~~~~~~~~~~s~~~L~~~i~~~~~~~--------------~~~~~l~Y~D~dgD~V~i~sd~Dl~~a~~   67 (84)
T PF00564_consen    3 RVKVRYGGD-IRRIISLPSDVSFDDLRSKIREKFGLL--------------DEDFQLKYKDEDGDLVTISSDEDLQEAIE   67 (84)
T ss_dssp             EEEEEETTE-EEEEEEECSTSHHHHHHHHHHHHHTTS--------------TSSEEEEEEETTSSEEEESSHHHHHHHHH
T ss_pred             EEEEEECCe-eEEEEEcCCCCCHHHHHHHHHHHhCCC--------------CccEEEEeeCCCCCEEEeCCHHHHHHHHH
Confidence            489999994 444688888889999999999999962              1458999999999999887 446888888


Q ss_pred             ccce
Q 035700          169 TVRR  172 (179)
Q Consensus       169 svKR  172 (179)
                      .+++
T Consensus        68 ~~~~   71 (84)
T PF00564_consen   68 QAKE   71 (84)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8753

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein

Probab=97.29  E-value=0.0013  Score=49.16  Aligned_cols=67  Identities=21%  Similarity=0.261  Sum_probs=49.2

Q ss_pred             eEEEEecCcccceeeecC---CCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEecCcChhHH
Q 035700           90 FVKVYMEGIPIGRKLDLL---AHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVGDVPWEMF  166 (179)
Q Consensus        90 ~VKV~MdG~~igRkVDL~---~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLVGDvPW~~F  166 (179)
                      -|||.-+|.-+=-++++.   .--+|++|...+++.|.+.             ...++++.|.|.||||..+-..  ++|
T Consensus         2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~-------------~~~~~~l~Y~Dedgd~V~l~~D--~DL   66 (91)
T cd06398           2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLS-------------PDADLSLTYTDEDGDVVTLVDD--NDL   66 (91)
T ss_pred             EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCC-------------CCCcEEEEEECCCCCEEEEccH--HHH
Confidence            389999997444455543   4579999999999999863             1246899999999999988554  344


Q ss_pred             hhccc
Q 035700          167 LSTVR  171 (179)
Q Consensus       167 v~svK  171 (179)
                      ..++.
T Consensus        67 ~~a~~   71 (91)
T cd06398          67 TDAIQ   71 (91)
T ss_pred             HHHHH
Confidence            44443

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module

>smart00666 PB1 PB1 domain

Probab=97.28  E-value=0.002  Score=45.26  Aligned_cols=66  Identities=23%  Similarity=0.357  Sum_probs=52.3

Q ss_pred             EEEEecCcccceeeecCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEec-CcChhHHhhc
Q 035700           91 VKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVG-DVPWEMFLST  169 (179)
Q Consensus        91 VKV~MdG~~igRkVDL~~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLVG-DvPW~~Fv~s  169 (179)
                      |||.-.|  --|.+-+..--+|++|..++.+.|+..              ...+.|.|+|.||||..+. |.=|++.++.
T Consensus         4 vK~~~~~--~~~~~~~~~~~s~~dL~~~i~~~~~~~--------------~~~~~l~Y~Dedgd~v~l~sd~Dl~~a~~~   67 (81)
T smart00666        4 VKLRYGG--ETRRLSVPRDISFEDLRSKVAKRFGLD--------------NQSFTLKYQDEDGDLVSLTSDEDLEEAIEE   67 (81)
T ss_pred             EEEEECC--EEEEEEECCCCCHHHHHHHHHHHhCCC--------------CCCeEEEEECCCCCEEEecCHHHHHHHHHH
Confidence            7887755  467788888899999999999999852              0358999999999998665 4578877777


Q ss_pred             cce
Q 035700          170 VRR  172 (179)
Q Consensus       170 vKR  172 (179)
                      +++
T Consensus        68 ~~~   70 (81)
T smart00666       68 YDS   70 (81)
T ss_pred             HHH
Confidence            663

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=97.26  E-value=0.0019  Score=45.05  Aligned_cols=65  Identities=23%  Similarity=0.347  Sum_probs=51.2

Q ss_pred             EEEEecCcccceeeecC-CCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEecC-cChhHHhh
Q 035700           91 VKVYMEGIPIGRKLDLL-AHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVGD-VPWEMFLS  168 (179)
Q Consensus        91 VKV~MdG~~igRkVDL~-~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLVGD-vPW~~Fv~  168 (179)
                      |||.-.|.  =|.+=+. .--+|++|...|.+.|+...              ..+.+.|+|.||||..+.+ .=|++-++
T Consensus         3 vK~~~~~~--~~~~~~~~~~~s~~~L~~~i~~~~~~~~--------------~~~~l~y~D~e~d~v~l~sd~Dl~~a~~   66 (81)
T cd05992           3 VKVKYGGE--IRRFVVVSRSISFEDLRSKIAEKFGLDA--------------VSFKLKYPDEDGDLVTISSDEDLEEAIE   66 (81)
T ss_pred             EEEEecCC--CEEEEEecCCCCHHHHHHHHHHHhCCCC--------------CcEEEEeeCCCCCEEEeCCHHHHHHHHH
Confidence            78888874  3444444 88899999999999999621              3478999999999998887 67777777


Q ss_pred             ccc
Q 035700          169 TVR  171 (179)
Q Consensus       169 svK  171 (179)
                      .++
T Consensus        67 ~~~   69 (81)
T cd05992          67 EAR   69 (81)
T ss_pred             HHh
Confidence            765

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=97.18  E-value=0.0021  Score=47.03  Aligned_cols=53  Identities=19%  Similarity=0.371  Sum_probs=42.7

Q ss_pred             EEEEecCcccceeeecCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEe
Q 035700           91 VKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMV  158 (179)
Q Consensus        91 VKV~MdG~~igRkVDL~~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLV  158 (179)
                      |||...|.  -+.+-|..--+|++|..++.++|...             ....|.|-|.|.||||..+
T Consensus         3 vK~~~~~d--~~r~~l~~~~~~~~L~~~i~~r~~~~-------------~~~~f~LkY~Ddegd~v~l   55 (82)
T cd06407           3 VKATYGEE--KIRFRLPPSWGFTELKQEIAKRFKLD-------------DMSAFDLKYLDDDEEWVLL   55 (82)
T ss_pred             EEEEeCCe--EEEEEcCCCCCHHHHHHHHHHHhCCC-------------CCCeeEEEEECCCCCeEEe
Confidence            89999885  45556666669999999999999952             1146999999999999876

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62

Probab=96.86  E-value=0.0049  Score=45.53  Aligned_cols=53  Identities=17%  Similarity=0.169  Sum_probs=45.7

Q ss_pred             EEEEecCcccceeeecCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEec
Q 035700           91 VKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVG  159 (179)
Q Consensus        91 VKV~MdG~~igRkVDL~~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLVG  159 (179)
                      |||.-.|.-+--+++-+..-+|++|..++.++|++.                .+.|.|-|.||||.++-
T Consensus         3 vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~----------------~f~lKYlDde~e~v~ls   55 (81)
T cd06396           3 LKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGLN----------------DIQIKYVDEENEEVSVN   55 (81)
T ss_pred             EEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC----------------cceeEEEcCCCCEEEEE
Confidence            799999987777788777889999999999999962                37899999999998763

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.

>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK

Probab=96.74  E-value=0.0095  Score=44.11  Aligned_cols=72  Identities=19%  Similarity=0.402  Sum_probs=48.7

Q ss_pred             EEEEecCcccceeeecCCC-CCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEecCc---ChhHH
Q 035700           91 VKVYMEGIPIGRKLDLLAH-DGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVGDV---PWEMF  166 (179)
Q Consensus        91 VKV~MdG~~igRkVDL~~~-~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLVGDv---PW~~F  166 (179)
                      +|+.-+| +| |++=+..- -+|.+|...+.+.|....           .....+.+.|.|.|||+.-+-+.   -|..=
T Consensus         3 iK~~~g~-Di-R~~~~~~~~~t~~~L~~~v~~~F~~~~-----------~~~~~flIKYkD~dGDlVTIts~~dL~~A~~   69 (81)
T cd06401           3 LKAQLGD-DI-RRIPIHNEDITYDELLLMMQRVFRGKL-----------GSSDDVLIKYKDEDGDLITIFDSSDLSFAIQ   69 (81)
T ss_pred             EEEEeCC-eE-EEEeccCccccHHHHHHHHHHHhcccc-----------CCcccEEEEEECCCCCEEEeccHHHHHHHHh
Confidence            6776655 55 44444432 399999999999998521           12346899999999999999875   34433


Q ss_pred             hhccceeEE
Q 035700          167 LSTVRRLKI  175 (179)
Q Consensus       167 v~svKRLrI  175 (179)
                      +...+||+|
T Consensus        70 ~~~~~~l~~   78 (81)
T cd06401          70 CSRILKLTL   78 (81)
T ss_pred             cCcceEEEE
Confidence            334445544

The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=96.48  E-value=0.0065  Score=45.24  Aligned_cols=51  Identities=20%  Similarity=0.324  Sum_probs=39.1

Q ss_pred             cccceeeecC--CCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEec
Q 035700           98 IPIGRKLDLL--AHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVG  159 (179)
Q Consensus        98 ~~igRkVDL~--~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLVG  159 (179)
                      .|-||.+=+.  ...|+.+|..++.+-|+....           ....|.|.|.|.||||.++-
T Consensus         7 ~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~-----------~~~~~~L~YlDDEgD~VllT   59 (86)
T cd06409           7 DPKGRVHRFRLRPSESLEELRTLISQRLGDDDF-----------ETHLYALSYVDDEGDIVLIT   59 (86)
T ss_pred             CCCCCEEEEEecCCCCHHHHHHHHHHHhCCccc-----------cCCcccEEEEcCCCCEEEEe
Confidence            4677765554  478999999999999996421           12458999999999998763

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=96.17  E-value=0.017  Score=42.67  Aligned_cols=68  Identities=19%  Similarity=0.235  Sum_probs=50.4

Q ss_pred             EEEEecCcccceeeecCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEec-CcChhHHhhc
Q 035700           91 VKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVG-DVPWEMFLST  169 (179)
Q Consensus        91 VKV~MdG~~igRkVDL~~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLVG-DvPW~~Fv~s  169 (179)
                      ||..-|.+=-=-.+|.....+|++++.-|+.||.+.              ...++|-|.|.+||.+-+- |+-+..=+++
T Consensus         3 VKSkfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~l~--------------~~~f~i~Y~D~~gDLLPInNDdNf~kAlss   68 (80)
T cd06403           3 VKSKFDAEFRRFSLDRNKPGKFEDFYKLLEHLHHIP--------------NVDFLIGYTDPHGDLLPINNDDNFLKALSS   68 (80)
T ss_pred             eecccCCeEEEEEeccccCcCHHHHHHHHHHHhCCC--------------CCcEEEEEeCCCCCEecccCcHHHHHHHHc
Confidence            666666643333566667799999999999999863              1458999999999999764 5566666666


Q ss_pred             cce
Q 035700          170 VRR  172 (179)
Q Consensus       170 vKR  172 (179)
                      ++.
T Consensus        69 a~p   71 (80)
T cd06403          69 ANP   71 (80)
T ss_pred             CCC
Confidence            664

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The

>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover

Probab=96.01  E-value=0.041  Score=41.05  Aligned_cols=58  Identities=24%  Similarity=0.354  Sum_probs=42.7

Q ss_pred             eEEEEecC---cccceee--ecCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEecC
Q 035700           90 FVKVYMEG---IPIGRKL--DLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVGD  160 (179)
Q Consensus        90 ~VKV~MdG---~~igRkV--DL~~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLVGD  160 (179)
                      .||.+..|   .+==|++  |=....+|++|...+.++|...             .+..+.+.|.|.|||..-+..
T Consensus         2 ~vkayl~~~~~~~EIRRf~l~~~~~~s~~~L~~~V~~~f~~l-------------~~~~ftlky~DeeGDlvtIss   64 (87)
T cd06402           2 TVKAYLLGKDANAEIRRFAIDEDVSTSYEYLVEKVAAVFPSL-------------RGKNFQLFWKDEEGDLVAFSS   64 (87)
T ss_pred             eEEEeecCCCCccceEEEEecCCCCcCHHHHHHHHHHHcccc-------------CCCcEEEEEECCCCCEEeecC
Confidence            57888877   2233444  4466679999999999999641             114699999999999987654

The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=95.62  E-value=0.045  Score=40.76  Aligned_cols=54  Identities=20%  Similarity=0.223  Sum_probs=42.3

Q ss_pred             EEEEecCcccceeeecCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEec
Q 035700           91 VKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVG  159 (179)
Q Consensus        91 VKV~MdG~~igRkVDL~~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLVG  159 (179)
                      +|+.-.|.-.--.+|.  .-+|++|.+++.+||...             .+..+++.|.|.|||.--+.
T Consensus         3 ~K~~y~gdi~it~~d~--~~s~e~L~~~v~~~c~~~-------------~~q~ft~kw~DEEGDp~tiS   56 (83)
T cd06404           3 VKAAYNGDIMITSIDP--SISLEELCNEVRDMCRFH-------------NDQPFTLKWIDEEGDPCTIS   56 (83)
T ss_pred             EEEEecCcEEEEEcCC--CcCHHHHHHHHHHHhCCC-------------CCCcEEEEEECCCCCceeec
Confidence            7899999655555555  678999999999999852             12458999999999986554

PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,

>cd06397 PB1_UP1 Uncharacterized protein 1

Probab=95.47  E-value=0.063  Score=39.91  Aligned_cols=66  Identities=17%  Similarity=0.212  Sum_probs=50.8

Q ss_pred             EEEEecCcccceeeecCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEe-cCcChhHHhhc
Q 035700           91 VKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMV-GDVPWEMFLST  169 (179)
Q Consensus        91 VKV~MdG~~igRkVDL~~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLV-GDvPW~~Fv~s  169 (179)
                      -||.-+|  -.|++--..-=+|.+|...|+.+|.++.              -.+.|+|.|.|||..-+ -|.--++|.+-
T Consensus         3 fKv~~~g--~~RRf~~~~~pt~~~L~~kl~~Lf~lp~--------------~~~~vtYiDeD~D~ITlssd~eL~d~~~~   66 (82)
T cd06397           3 FKSSFLG--DTRRIVFPDIPTWEALASKLENLYNLPE--------------IKVGVTYIDNDNDEITLSSNKELQDFYRL   66 (82)
T ss_pred             EEEEeCC--ceEEEecCCCccHHHHHHHHHHHhCCCh--------------hHeEEEEEcCCCCEEEecchHHHHHHHHh
Confidence            4888888  5788888888999999999999999741              12789999999998754 44556666554


Q ss_pred             cce
Q 035700          170 VRR  172 (179)
Q Consensus       170 vKR  172 (179)
                      ..|
T Consensus        67 ~~~   69 (82)
T cd06397          67 SHR   69 (82)
T ss_pred             ccc
Confidence            443

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.

>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA

Probab=93.53  E-value=0.32  Score=36.30  Aligned_cols=55  Identities=22%  Similarity=0.298  Sum_probs=44.9

Q ss_pred             ceEEEEecCcccceeeecCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEecCc
Q 035700           89 FFVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVGDV  161 (179)
Q Consensus        89 ~~VKV~MdG~~igRkVDL~~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLVGDv  161 (179)
                      .-|||+-.|.  .|-|-+..-=+|++|...+.++|++.               ..+.+-|.|. ||..-+++.
T Consensus         3 ikVKv~~~~D--v~~i~v~~~i~f~dL~~kIrdkf~~~---------------~~~~iKykDE-GD~iti~sq   57 (86)
T cd06408           3 IRVKVHAQDD--TRYIMIGPDTGFADFEDKIRDKFGFK---------------RRLKIKMKDD-GDMITMGDQ   57 (86)
T ss_pred             EEEEEEecCc--EEEEEcCCCCCHHHHHHHHHHHhCCC---------------CceEEEEEcC-CCCccccCH
Confidence            3489998886  66777777778999999999999962               2479999999 999887764

NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is

>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis

Probab=82.03  E-value=3  Score=31.63  Aligned_cols=40  Identities=28%  Similarity=0.312  Sum_probs=33.0

Q ss_pred             eecCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEec
Q 035700          104 LDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVG  159 (179)
Q Consensus       104 VDL~~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLVG  159 (179)
                      =||+..-.|.+|..-..+-|...                +-+|-|+|.|||..-+=
T Consensus        22 e~l~~~P~~kdLl~lmr~~f~~~----------------dIaLNYrD~EGDLIRll   61 (92)
T cd06399          22 EDLSSTPLLKDLLELTRREFQRE----------------DIALNYRDAEGDLIRLL   61 (92)
T ss_pred             cccccCccHHHHHHHHHHHhchh----------------heeeeeecCCCCEEEEc
Confidence            37888899999999999999852                24799999999987553

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes , such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domain of p40 represents a type I PB1 domain which interacts with the PB1 domain of oxidase activator p67 w

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	179
1wmh_B	86	Partitioning defective-6 homolog alpha; kinase, PB	96.34
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	96.14
2kkc_A	102	Sequestosome-1; P62, PB1, autophagy, ubiquitin-pro	95.61
2ktr_A	117	Sequestosome-1; autophagy, NF-KB signaling, HOMO-o	95.01
1q1o_A	98	Cell division control protein 24; PB1 domain, PCCR	91.68
2bkf_A	87	Zinc-finger protein NBR1 (NEXT to breast cancer 1;	90.29
1oey_J	107	P40-PHOX, neutrophil cytosol factor 4; immune syst	89.3
1wj6_A	101	KIAA0049 protein, RSGI RUH-024; PB1 domain, protei	88.78
1pqs_A	77	Cell division control protein 24; alpha and beta p	84.09
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	81.66

>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2

Probab=96.34  E-value=0.0098  Score=43.36  Aligned_cols=71  Identities=17%  Similarity=0.148  Sum_probs=53.0

Q ss_pred             ccceEEEEecCcccceeeecCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEecCc-ChhH
Q 035700           87 ATFFVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVGDV-PWEM  165 (179)
Q Consensus        87 ~~~~VKV~MdG~~igRkVDL~~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLVGDv-PW~~  165 (179)
                      +..-||..-|++--=-.+|-....+|++|+..|+++|.+.              ...+++.|.|.|||++-+-++ =..+
T Consensus         5 ~~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~--------------~~~f~i~Y~D~dGDLlpInnDdnl~~   70 (86)
T 1wmh_B            5 SIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIP--------------GLDVLLGYTDAHGDLLPLTNDDSLHR   70 (86)
T ss_dssp             CEEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCT--------------TCCCEEEEECTTSCEEECCSHHHHHH
T ss_pred             CEEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCC--------------CCCEEEEEECCCCCEeeecCHHHHHH
Confidence            3466888888865444666677889999999999999852              135899999999999977543 4555


Q ss_pred             Hhhccc
Q 035700          166 FLSTVR  171 (179)
Q Consensus       166 Fv~svK  171 (179)
                      =+.++|
T Consensus        71 Al~~a~   76 (86)
T 1wmh_B           71 ALASGP   76 (86)
T ss_dssp             HTTSSS
T ss_pred             HHHhCC
Confidence            555565

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A

Probab=96.14  E-value=0.018  Score=41.97  Aligned_cols=57  Identities=23%  Similarity=0.248  Sum_probs=43.6

Q ss_pred             ccceEEEEecCcccceeeecCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEe
Q 035700           87 ATFFVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMV  158 (179)
Q Consensus        87 ~~~~VKV~MdG~~igRkVDL~~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLV  158 (179)
                      +..=|||+-+|.-  |.+.+..--+|++|..+|.++|...             .+..+++.|.|.|||+.-+
T Consensus         5 ~~vkvK~~~~gdi--~~~~v~~~i~~~~L~~kv~~~~~~~-------------~~~~f~lky~DEeGD~iti   61 (89)
T 1vd2_A            5 SQVRVKAYYRGDI--MITHFEPSISFEGLCNEVRDMCSFD-------------NEQLFTMKWIDEEGDPCTV   61 (89)
T ss_dssp             SCEEEEEESSSCE--EEEEECTTCCHHHHHHHHHHHTTCC-------------SSCCEEEEECCSSSCCEEC
T ss_pred             CeEEEEEEeCCeE--EEEECCCCCCHHHHHHHHHHHhCCC-------------CCCeEEEEEECCCCCcccc
Confidence            3466899999964  4444445669999999999999952             1245899999999998654

>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B

Probab=95.61  E-value=0.029  Score=41.86  Aligned_cols=62  Identities=16%  Similarity=0.234  Sum_probs=44.7

Q ss_pred             ccceEEEEecCc----ccceeeecCC-----------CCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeC
Q 035700           87 ATFFVKVYMEGI----PIGRKLDLLA-----------HDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDK  151 (179)
Q Consensus        87 ~~~~VKV~MdG~----~igRkVDL~~-----------~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~  151 (179)
                      .+.-||++..|.    .-=|++-|..           ..+|++|...+.++|...      .       +..|.+.|.|.
T Consensus         4 m~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l------~-------~~~f~l~Y~De   70 (102)
T 2kkc_A            4 MSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPAL------R-------PGGFQAHYRAE   70 (102)
T ss_dssp             CEEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTS------C-------SSCEEEEEECT
T ss_pred             ceEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHcccc------C-------CCcEEEEEECC
Confidence            356789999752    2345555532           248999999999999731      1       24599999999


Q ss_pred             CCCeEEecCc
Q 035700          152 EGDWMMVGDV  161 (179)
Q Consensus       152 eGD~mLVGDv  161 (179)
                      |||+.-+.+.
T Consensus        71 dGDlItiSsD   80 (102)
T 2kkc_A           71 RGDLVAFSSD   80 (102)
T ss_dssp             TCCEEEECSH
T ss_pred             CCCEEEecCH
Confidence            9999877654

>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}

Probab=95.01  E-value=0.06  Score=41.16  Aligned_cols=64  Identities=16%  Similarity=0.232  Sum_probs=44.6

Q ss_pred             CCccceEEEEecCc----ccceeeecC-----------CCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEE
Q 035700           85 SSATFFVKVYMEGI----PIGRKLDLL-----------AHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYE  149 (179)
Q Consensus        85 ~~~~~~VKV~MdG~----~igRkVDL~-----------~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~Ye  149 (179)
                      ...+.-||++..|.    .==|++-|.           .-.+|++|...+.++|...      .       +..|.+.|.
T Consensus        17 ~~~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L------~-------~~~f~l~Yk   83 (117)
T 2ktr_A           17 HMGSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPAL------R-------PGGFQAHYR   83 (117)
T ss_dssp             ---CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTS------C-------SSCEEEEEE
T ss_pred             ccccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHcccc------C-------CCcEEEEEE
Confidence            34568899999751    223555543           2459999999999999631      1       245999999


Q ss_pred             eCCCCeEEecCc
Q 035700          150 DKEGDWMMVGDV  161 (179)
Q Consensus       150 D~eGD~mLVGDv  161 (179)
                      |.|||+.-+-..
T Consensus        84 DEdGDlItISsD   95 (117)
T 2ktr_A           84 AERGDLVAFSSD   95 (117)
T ss_dssp             CTTCCEEEECSH
T ss_pred             CCCCCEEEecCH
Confidence            999998876543

>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B

Probab=91.68  E-value=0.57  Score=34.67  Aligned_cols=75  Identities=15%  Similarity=0.295  Sum_probs=53.3

Q ss_pred             ccceEEEEecCc------ccceeeecCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEecC
Q 035700           87 ATFFVKVYMEGI------PIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVGD  160 (179)
Q Consensus        87 ~~~~VKV~MdG~------~igRkVDL~~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLVGD  160 (179)
                      ++.-|||+-+..      .=.|.|=...-=+|++|+.++.+-|.... ..+.        .....+-|+|.|||+...++
T Consensus         4 ~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~-~~~i--------~~~~klkYkDEdGD~Vtl~s   74 (98)
T 1q1o_A            4 GSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTH-NNNI--------SPITKIKYQDEDGDFVVLGS   74 (98)
T ss_dssp             SCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHC-SSCC--------CCCCCEEEECSSSCEEEECS
T ss_pred             ccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCc-cccc--------cceeEEEEEcCCCCEEEEcC
Confidence            345688887742      12367777788899999999999998631 0010        12357899999999987775


Q ss_pred             c-ChhHHhhcc
Q 035700          161 V-PWEMFLSTV  170 (179)
Q Consensus       161 v-PW~~Fv~sv  170 (179)
                      . =|++=+.++
T Consensus        75 ddDl~~A~e~~   85 (98)
T 1q1o_A           75 DEDWNVAKEML   85 (98)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            4 788887775

>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A

Probab=90.29  E-value=0.88  Score=33.12  Aligned_cols=55  Identities=11%  Similarity=0.113  Sum_probs=42.3

Q ss_pred             ceEEEEecCcccceeeecCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEec
Q 035700           89 FFVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVG  159 (179)
Q Consensus        89 ~~VKV~MdG~~igRkVDL~~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLVG  159 (179)
                      .-+||.-.|...=--|.-..--.+++|...+..+|+.                ..++|.|.|.|||-.-|=
T Consensus         7 v~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L----------------~~~~ikY~DEenD~v~i~   61 (87)
T 2bkf_A            7 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDL----------------NTIQIKYLDEENEEVSIN   61 (87)
T ss_dssp             EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTC----------------SSEEEEEECTTSCEEEEC
T ss_pred             EEEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCC----------------CceEEEEEcCCCCEEEEe
Confidence            3478888887544345444477899999999999996                247999999999987663

>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=89.30  E-value=0.64  Score=35.04  Aligned_cols=40  Identities=28%  Similarity=0.332  Sum_probs=33.7

Q ss_pred             ecCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEecC
Q 035700          105 DLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVGD  160 (179)
Q Consensus       105 DL~~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLVGD  160 (179)
                      ||..--.|++|..-..+-|...                +-+|-|+|.|||+.-+=|
T Consensus        28 dl~~~P~ykdLl~lmr~~F~~~----------------DIaLNYrD~eGDLIrild   67 (107)
T 1oey_J           28 DLSSTPLLKDLLELTRREFQRE----------------DIALNYRDAEGDLVRLLS   67 (107)
T ss_dssp             CTTCCCCHHHHHHHHHHHHCCS----------------SEEEEEECTTSCEEECCS
T ss_pred             ccccCCCHHHHHHHHHHHhccc----------------ceeeeeecCCCCEEEEcc
Confidence            6788889999999999999842                358999999999987654

>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2

Probab=88.78  E-value=0.93  Score=33.86  Aligned_cols=64  Identities=11%  Similarity=0.114  Sum_probs=47.8

Q ss_pred             ceEEEEecCcccceeeecCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEecCcChhHHhh
Q 035700           89 FFVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVGDVPWEMFLS  168 (179)
Q Consensus        89 ~~VKV~MdG~~igRkVDL~~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLVGDvPW~~Fv~  168 (179)
                      .-+||.-.|...=--|.-..--.+++|...+..+|+..                .++|.|.|.|||-.-|=  -+.+|-+
T Consensus        15 v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~----------------~~~IkY~DEenD~V~i~--Sq~E~eE   76 (101)
T 1wj6_A           15 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN----------------TIQIKYLDEENEEVSIN--SQGEYEE   76 (101)
T ss_dssp             EEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCS----------------SBCCEEECTTSCEECCC--SHHHHHH
T ss_pred             EEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCC----------------ceEEEEecCCCCEEEEe--cHHHHHH
Confidence            45899999976544564455778999999999999962                36899999999988763  3555544


Q ss_pred             cc
Q 035700          169 TV  170 (179)
Q Consensus       169 sv  170 (179)
                      .+
T Consensus        77 Al   78 (101)
T 1wj6_A           77 AL   78 (101)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A

Probab=84.09  E-value=1  Score=31.70  Aligned_cols=59  Identities=19%  Similarity=0.380  Sum_probs=41.1

Q ss_pred             eecCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEecC-cChhHHhhccc
Q 035700          104 LDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVGD-VPWEMFLSTVR  171 (179)
Q Consensus       104 VDL~~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLVGD-vPW~~Fv~svK  171 (179)
                      |=...-=+|++|...+.+-|...  .+       ........+-|+|.|||+...++ .=|++=+.++|
T Consensus         6 i~V~~~i~f~~L~~kI~~kl~~~--~~-------~~~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~~   65 (77)
T 1pqs_A            6 LLVEKVWNFDDLIMAINSKISNT--HN-------NNISPITKIKYQDEDGDFVVLGSDEDWNVAKEMLA   65 (77)
T ss_dssp             EECTTCCCSHHHHHHHHHHTTTT--TS-------SCSCSTTCCEEEETTTEEEECCSTTHHHHHHHHHH
T ss_pred             EEeCCCCCHHHHHHHHHHHHccc--cc-------ccccceeEEEEEcCCCCEEEEcCHHHHHHHHHHHH
Confidence            33445558999999999999853  00       01013457899999999976665 57888877763

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=81.66  E-value=7.8  Score=27.60  Aligned_cols=64  Identities=8%  Similarity=0.091  Sum_probs=50.2

Q ss_pred             ceEEEEecCcccceeeecCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEe-CCCCeEEecCcChhHHh
Q 035700           89 FFVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYED-KEGDWMMVGDVPWEMFL  167 (179)
Q Consensus        89 ~~VKV~MdG~~igRkVDL~~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD-~eGD~mLVGDvPW~~Fv  167 (179)
                      .=|||+-.   +.-.|....=-+|.+|...|.+-+....              ..-+|-|.| .+|.|++.+|.=++.=.
T Consensus         6 ~~VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~l~~--------------~~~~LsYk~~~s~~~vi~~d~dl~~aw   68 (83)
T 1oey_A            6 YTLKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLELRL--------------EHTKLSYRPRDSNELVPLSEDSMKDAW   68 (83)
T ss_dssp             EEEEEESS---SEEEEEECTTCCHHHHHHHHHHHTTCCG--------------GGCCEEECCTTCSSCEECCTTTHHHHH
T ss_pred             EEEEEEEE---EEEEEECCCCCCHHHHHHHHHHHhCCCc--------------ceeEEEeeCCCCCCeeccChHHHHHHH
Confidence            34666665   6777888888899999999999998631              123689999 68888999999998877


Q ss_pred             hc
Q 035700          168 ST  169 (179)
Q Consensus       168 ~s  169 (179)
                      ..
T Consensus        69 ~~   70 (83)
T 1oey_A           69 GQ   70 (83)
T ss_dssp             TT
T ss_pred             Hh
Confidence            76

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	179
d2bkfa1	85	Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum	97.22
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	96.35
d1wmhb_	82	Partitioning defective-6 homolog alpha, PAR-6 alph	89.17
d1oeyj_	105	Neutrophil cytosol factor 4 (p40phox component of	85.86

>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Next to BRCA1 gene 1 protein, NBR1 (KIAA0049)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.00039  Score=48.99  Aligned_cols=66  Identities=14%  Similarity=0.132  Sum_probs=51.5

Q ss_pred             ceEEEEecCcccceeeecCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEec-CcChhHHh
Q 035700           89 FFVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVG-DVPWEMFL  167 (179)
Q Consensus        89 ~~VKV~MdG~~igRkVDL~~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLVG-DvPW~~Fv  167 (179)
                      .=|||...|..+=-+|-+..-.+|.+|..+|++.|++.                .+.|.|.|.||||.++. |.=.++.+
T Consensus         5 vtvKvtf~~dt~RF~ls~~~~~~~~~L~~~i~~rf~l~----------------~~~lkY~Ddd~e~v~l~~d~dl~E~~   68 (85)
T d2bkfa1           5 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN----------------TIQIKYLDEENEEVSINSQGEYEEAL   68 (85)
T ss_dssp             EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS----------------SEEEEEECTTSCEEEECSHHHHHHHH
T ss_pred             EEEEEEECCceEEEEecCCCCCcHHHHHHHHHHhcCcc----------------cceEEEEcCCCCEEEEecHHHHHHHH
Confidence            45899998876655676777889999999999999952                26799999999998765 44566665


Q ss_pred             hcc
Q 035700          168 STV  170 (179)
Q Consensus       168 ~sv  170 (179)
                      +.+
T Consensus        69 ~~a   71 (85)
T d2bkfa1          69 KMA   71 (85)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.35  E-value=0.0023  Score=44.12  Aligned_cols=72  Identities=15%  Similarity=0.101  Sum_probs=52.2

Q ss_pred             CccceEEEEecCcccceeeecCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEe-cCcChh
Q 035700           86 SATFFVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMV-GDVPWE  164 (179)
Q Consensus        86 ~~~~~VKV~MdG~~igRkVDL~~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLV-GDvPW~  164 (179)
                      ..+.-|||+.++.-  |.+-|..--+|.+|..++++.|..                ..+.|-|+|.||||..+ .|.=++
T Consensus        10 ~~~ikVKv~~~~D~--~~~~l~~~it~~dL~~kI~~rf~~----------------~~~~lkY~Dedgd~v~i~sD~Dl~   71 (85)
T d1ip9a_          10 LKTTKIKFYYKDDI--FALMLKGDTTYKELRSKIAPRIDT----------------DNFKLQTKLFDGSGEEIKTDSQVS   71 (85)
T ss_dssp             CCCEEEEECBTTCC--EEEEECSCCCHHHHHHHHHHHHTS----------------SCEEEEECCSSSCCSCCCSHHHHH
T ss_pred             CCCEEEEEEECCcE--EEEEeCCCCCHHHHHHHHHHHhCC----------------CceEEEEEcCCCCEEEEeCHHHHH
Confidence            45567888888864  445555667899999999999974                13799999999999755 444566


Q ss_pred             HHhhccceeEE
Q 035700          165 MFLSTVRRLKI  175 (179)
Q Consensus       165 ~Fv~svKRLrI  175 (179)
                      +=++...||.+
T Consensus        72 ~ai~~~~kl~v   82 (85)
T d1ip9a_          72 NIIQAKLKISV   82 (85)
T ss_dssp             HHHHTTCCEEE
T ss_pred             HHHHhcCcEEE
Confidence            65655555543

>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha, PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Partitioning defective-6 homolog alpha, PAR-6 alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.17  E-value=0.65  Score=31.80  Aligned_cols=67  Identities=18%  Similarity=0.174  Sum_probs=45.7

Q ss_pred             EEEEecCcccceeeecCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEecCc-ChhHHhhc
Q 035700           91 VKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVGDV-PWEMFLST  169 (179)
Q Consensus        91 VKV~MdG~~igRkVDL~~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLVGDv-PW~~Fv~s  169 (179)
                      ||=..|.+=-=-.+|....++|++.+.-|+++-.+.              ...+++.|.|..||.+-+-.+ -+.-=+.+
T Consensus         5 VKSKFdAEfRRFsl~r~~~~~fe~F~~Lle~~H~l~--------------~~~f~i~Y~D~hgDLLPINNDdNf~kA~~s   70 (82)
T d1wmhb_           5 VKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIP--------------GLDVLLGYTDAHGDLLPLTNDDSLHRALAS   70 (82)
T ss_dssp             EEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCT--------------TCCCEEEEECTTSCEEECCSHHHHHHHTTS
T ss_pred             eecccCceEEEeeeccccccCHHHHHHHHHHHcCCC--------------CCcEEEEEecCCCCcccccCchHHHHHHHh
Confidence            444444432233678888999999999999998752              145899999999999977533 33333344


Q ss_pred             cc
Q 035700          170 VR  171 (179)
Q Consensus       170 vK  171 (179)
                      |+
T Consensus        71 a~   72 (82)
T d1wmhb_          71 GP   72 (82)
T ss_dssp             SS
T ss_pred             cC
Confidence            43

>d1oeyj_ d.15.2.2 (J:) Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.86  E-value=0.65  Score=33.09  Aligned_cols=44  Identities=25%  Similarity=0.279  Sum_probs=35.3

Q ss_pred             ceeeecCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEecC
Q 035700          101 GRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVGD  160 (179)
Q Consensus       101 gRkVDL~~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLVGD  160 (179)
                      .=-=||+.--.|.+|..-..+-|...                +-+|-|.|.|||..-+=|
T Consensus        22 ~veedl~~~P~ykdLl~lmr~~f~~~----------------dIaLNYrD~eGDLIRlld   65 (105)
T d1oeyj_          22 AVEEDLSSTPLLKDLLELTRREFQRE----------------DIALNYRDAEGDLVRLLS   65 (105)
T ss_dssp             EECSCTTCCCCHHHHHHHHHHHHCCS----------------SEEEEEECTTSCEEECCS
T ss_pred             EEccccccCccHHHHHHHHHHHhccc----------------eeEeeeecCCCCEEEEcc
Confidence            33348888999999999999999852                358999999999876533