Citrus Sinensis ID: 035705

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------76
Protein Sequence
MMFGNPAGAVFLAGKQQVFPVDYEAEVSQRLVDAAHVNDVKRANECIGDPFVDVNFVGTVSLRAKKTELVLHDEAAHEVRVVYEEFKTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTAAVREDHLEILDLLIKAGACQEACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHTKCGKGSPHVKLLKMWGKSRKRNVVCRAAEVGPSDTFRWNRRRKFDVEEPGMFHVVTTQNKEVHFVCQGGLEMADLWVRGIRLVTGQAIFGKMQLRVNHK
Secondary Structure (PSIPRED)
cccccHHHHHHHcccccccccccccccHHHHHHHHHHccHHHHHHHHHccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccHHHHHHHHHccHHHHHHHHHccccccccccHHHHHHHcccHHHHHHHHHccccccccccHHHHHHHHcccHHHHHHHHHcccccccccHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHccHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHccccccHHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHccccHHHHHHHHHccHHHHHHHHHHcccccccccccccHHHHHHHHccccEEEcccccccHHHHHcccHHHHHHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHcccccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHcccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccEEcccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccHHHHHHccccHHHHHHHHcccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHHcccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHccccHHHHHHHHcccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccccHHHHHHHccccHHHEEHccccccccccccccccHHEccc
Coil and Loop (DISEMBL)
mmfgnpagavflagkqqvfpvdyEAEVSQRLVDAAhvndvkranecigdpfvdvnfVGTVSLRAKKTELVLHDEAAHEVRVVYEEFKTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTAAVREDHLEILDLLIKAGACQEACEEALLETsylgqarpaellmatdlirpqvSVHALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQsskpalhanfdCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGawswdmdtgeelrvgaGLAEDYCITWCAVEYFESSGAILHMLFQHispnilhngRTLIHHAILCNNARAVELLLNCavdkefpvqtysktelrpIHLAARLGSAKILRRLISAGcninsrtaaGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSirsgniiqssnasrfsplmfVTQANDVDALKKLIEWAdvdldeqdadGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRcydvnasdadgytPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALAREngngneaeNVILDELALTLVLdgtyvkkhtkcgkgsphvKLLKMwgksrkrnvvcraaevgpsdtfrwnrrrkfdveepgmfhvvttqnKEVHFVCQGGLEMADLWVRGIRLVTGQAIFGKMQLRVNHK
Flexible Loop (DISEMBL)
MMFGNPAGAVFLAGKQQVFPVDYEAEVSQRLVDAAHVNDVKRanecigdpfvdVNFVGTVSLRAKKTELVLHDEAAHEVRVVYEEFKTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTAAVREDHLEILDLLIKAGACQEACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQtysktelrpihLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIqssnasrfspLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKkhtkcgkgsphvkllkmwgksrkrnvvcraaevgpsdtfrwnrrrKFDVEEPGMFHVVTTQNKEVHFVCQGGLEMADLWVRGIRLVTGqaifgkmqlrvnhk
Low Complexity Region (SEG)
MMFGNPAGAVFLAGKQQVFPVDYEAEVSQRLVDAAHVNDVKRANECIGDPFVDVNFVGTVSLRAKKTELVLHDEAAHEVRVVYEEFKTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTAAVREDHLEILDLLIKagacqeaceealleTSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDadgfsaamiaaaaghveaFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARengngneaenVILDELALTLVLDGTYVKKHTKCGKGSPHVKLLKMWGKSRKRNVVCRAAEVGPSDTFRWNRRRKFDVEEPGMFHVVTTQNKEVHFVCQGGLEMADLWVRGIRLVTGQAIFGKMQLRVNHK
Disordered region (IsUnstruct)
*******GAVFLAGKQQVFPVDYEAEVSQRLVDAAHVNDVKRANECIGDPFVDVNFVGTVSLRAKKTELVLHDEAAHEVRVVYEEFKTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTAAVREDHLEILDLLIKAGACQEACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALAR*****NEAENVILDELALTLVLDGTYVKKHTKCGKGSPHVKLLKMWGKSRKRNVVCRAAEVGPSDTFRWNRRRKFDVEEPGMFHVVTTQNKEVHFVCQGGLEMADLWVRGIRLVTGQAIFGKMQL*****
Disordered Region (DISOPRED)
*MFGNPAGAVFLAGKQQVFPVDYEAEVSQRLVDAAHVNDVKRANECIGDPFVDVNFVGTVSLRAKKTELVLHDEAAHEVRVVYEEFKTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTAAVREDHLEILDLLIKAGACQEACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHTKCGKGSPHVKLLKMWGKSRKRNVVCRAAEVGPSDTFRWNRRRKFDVEEPGMFHVVTTQNKEVHFVCQGGLEMADLWVRGIRLVTGQAIFGKMQLRVN**
Disordered Region (DISEMBL)
MMFGNPAGAVFLAGKQQVFPVDYEAEVSQRLVDAAHVNDVKRANECIGDPFVDVNFVGTVSLRAKKTELVLHDEAAHEVRVVYEEFKTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTAAVREDHLEILDLLIKAGACQEACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHTKCGKGSPHVKLLKMWGKSRKRNVVCRAAEVGPSDTFRWNRRRKFDVEEPGMFHVVTTQNKEVHFVCQGGLEMADLWVRGIRLVTGQAIFGKMQLRVNHK
Disordered Region (DISPRO)
*************************EVSQRLVDAAHVNDVKRANECIGDPFVDVNFVGTVSLRAKKTELVLHDEAAHEVRVVYEEFKTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTAAVREDHLEILDLLIKAGACQEACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHTKCGKGSPHVKLLKMWGKSRKRNVVCRAAEVGPSDTFRWNRRRKFDVEEPGMFHVVTTQNKEVHFVCQGGLEMADLWVRGIRLVT*****GKM*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMFGNPAGAVFLAGKQQVFPVDYEAEVSQRLVDAAHVNDVKRANECIGDPFVDVNFVGTVSLRAKKTELVLHDEAAHEVRVVYEEFKTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTAAVREDHLEILDLLIKAGACQEACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHTKCGKGSPHVKLLKMWGKSRKRNVVCRAAEVGPSDTFRWNRRRKFDVEEPGMFHVVTTQNKEVHFVCQGGLEMADLWVRGIRLVTGQAIFGKMQLRVNHK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	758	2.2.26 [Sep-21-2011]
Q12955	4377	Ankyrin-3 OS=Homo sapiens	yes	no	0.663	0.114	0.25	6e-30
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	yes	no	0.671	0.259	0.247	4e-27
Q01484	3957	Ankyrin-2 OS=Homo sapiens	no	no	0.775	0.148	0.231	2e-25
Q8C8R3	3898	Ankyrin-2 OS=Mus musculus	no	no	0.576	0.112	0.227	9e-25
P16157	1881	Ankyrin-1 OS=Homo sapiens	no	no	0.692	0.279	0.249	2e-23
Q02357	1862	Ankyrin-1 OS=Mus musculus	no	no	0.668	0.272	0.237	2e-22
Q502K3	1071	Serine/threonine-protein	no	no	0.529	0.374	0.255	1e-20
Q9ULJ7	1429	Ankyrin repeat domain-con	no	no	0.626	0.332	0.257	1e-18
Q5ZLC8	1073	Serine/threonine-protein	no	no	0.532	0.376	0.255	2e-18
Q5F478	990	Serine/threonine-protein	no	no	0.525	0.402	0.259	9e-18

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score =  133 bits (334), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 146/584 (25%), Positives = 235/584 (40%), Gaps = 81/584 (13%)

Query: 87  KTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATT-AAVREDHLEILDLLI-KAG 144
           + ++T L +A+  GN  +V+ LL  GA ++ K   G        R  H +++++L+ +A 
Sbjct: 266 RNDITPLHVASKRGNANMVKLLLDRGAKIDAKTRDGLTPLHCGARSGHEQVVEMLLDRAA 325

Query: 145 ACQEACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGV 204
                 +  L   S L  A   + L    L+   +  +  V      ++  +     CG 
Sbjct: 326 PILSKTKNGL---SPLHMATQGDHLNCVQLL---LQHNVPVDDVTNDYLTALHVAAHCG- 378

Query: 205 DANAIDRVLLQSSKPALHANFDCNALVG------AVVSRQISVVRLLLQAGVKMDIKVRM 258
               + +VLL        AN +  AL G      A    +I V+ LLL+ G  +      
Sbjct: 379 -HYKVAKVLLDKK-----ANPNAKALNGFTPLHIACKKNRIKVMELLLKHGASIQAVTES 432

Query: 259 GAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQH-ISPNILH-NGRTL 316
           G                       +T   V  F     I+  L  H  SPN  +  G T 
Sbjct: 433 G-----------------------LTPIHVAAFMGHVNIVSQLMHHGASPNTTNVRGETA 469

Query: 317 IHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNI 376
           +H A     A  V  L    V     V+  +K +  P+H++ARLG A I+++L+  G + 
Sbjct: 470 LHMAARSGQAEVVRYL----VQDGAQVEAKAKDDQTPLHISARLGKADIVQQLLQQGASP 525

Query: 377 NSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAG-------------QCAN--- 420
           N+ T +G T   + AR  HE+   FL   GA L +    G             + AN   
Sbjct: 526 NAATTSGYTPLHLSAREGHEDVAAFLLDHGASLSITTKKGFTPLHVAAKYGKLEVANLLL 585

Query: 421 -------SIAKSSRWTLGF------QQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVD 467
                  +  KS    L        Q+  +  +  G    ++  + ++PL    + N +D
Sbjct: 586 QKSASPDAAGKSGLTPLHVAAHYDNQKVALLLLDQGASPHAAAKNGYTPLHIAAKKNQMD 645

Query: 468 ALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLA 527
               L+E+   D +     G ++  +AA  GHV+   LLL   AN+ L NK G T + LA
Sbjct: 646 IATTLLEYG-ADANAVTRQGIASVHLAAQEGHVDMVSLLLGRNANVNLSNKSGLTPLHLA 704

Query: 528 ELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADG 587
                  V E ++ + A  + Q    G+  LH     G+  +V+ L+     VNA   +G
Sbjct: 705 AQEDRVNVAEVLVNQGAHVDAQT-KMGYTPLHVGCHYGNIKIVNFLLQHSAKVNAKTKNG 763

Query: 588 YTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENG 631
           YTPL  AA+ GH  +  +L+ + A  +       TAL +AR  G
Sbjct: 764 YTPLHQAAQQGHTHIINVLLQNNASPNELTVNGNTALGIARRLG 807

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.
Homo sapiens (taxid: 9606)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score =  124 bits (310), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 143/578 (24%), Positives = 233/578 (40%), Gaps = 69/578 (11%)

Query: 87  KTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATT-AAVREDHLEILDLLIKAGA 145
           + ++T L +A+  GN  +V+ LL  GA ++ K   G        R  H +++++L+   A
Sbjct: 249 RNDITPLHVASKRGNANMVKLLLDRGAKIDAKTRDGLTPLHCGARSGHEQVVEMLLDRSA 308

Query: 146 CQEACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVD 205
              +  +  L  S L  A   + L    L+   +  +  V      ++  +     CG  
Sbjct: 309 PILSKTKNGL--SPLHMATQGDHLNCVQLL---LQHNVPVDDVTNDYLTALHVAAHCG-- 361

Query: 206 ANAIDRVLL-QSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWD 264
              + +VLL + + P   A      L  A    +I V+ LLL+ G  +      G     
Sbjct: 362 HYKVAKVLLDKKASPNAKALNGFTPLHIACKKNRIRVMELLLKHGASIQAVTESG----- 416

Query: 265 MDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQH-ISPNILH-NGRTLIHHAIL 322
                             +T   V  F     I+  L  H  SPN  +  G T +H A  
Sbjct: 417 ------------------LTPIHVAAFMGHVNIVSQLMHHGASPNTTNVRGETALHMAAR 458

Query: 323 CNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAA 382
              A  V  L+         V+  +K +  P+H++ARLG A I+++L+  G + N+ T +
Sbjct: 459 SGQAEVVRYLVQDGAQ----VEAKAKDDQTPLHISARLGKADIVQQLLQQGASPNAATTS 514

Query: 383 GETAAMICARYKHEECLKFLASEGADLGLINYAG----QCANSIAKSSRWTLGFQQAV-- 436
           G T   + AR  HE+   FL   GA L +    G      A    K    +L  Q++   
Sbjct: 515 GYTPLHLAAREGHEDVAAFLLDHGASLSITTKKGFTPLHVAAKYGKLEVASLLLQKSASP 574

Query: 437 ----------------VDSIRSGNIIQSSNASR-------FSPLMFVTQANDVDALKKLI 473
                            D+ +   ++    AS        ++PL    + N +D    L+
Sbjct: 575 DAAGKSGLTPLHVAAHYDNQKVALLLLDQGASPHAAAKNGYTPLHIAAKKNQMDIATSLL 634

Query: 474 EWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNG 533
           E+   D +     G ++  +AA  GHV+   LLL   AN+ L NK G T + LA      
Sbjct: 635 EYG-ADANAVTRQGIASVHLAAQEGHVDMVSLLLSRNANVNLSNKSGLTPLHLAAQEDRV 693

Query: 534 EVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLML 593
            V E ++ + A  + Q    G+  LH     G+  +V+ L+     VNA   +GYT L  
Sbjct: 694 NVAEVLVNQGAHVDAQT-KMGYTPLHVGCHYGNIKIVNFLLQHSAKVNAKTKNGYTALHQ 752

Query: 594 AAKSGHGSVCQLLISSGAKCDIENARNETALALARENG 631
           AA+ GH  +  +L+ + A  +       TALA+AR  G
Sbjct: 753 AAQQGHTHIINVLLQNNASPNELTVNGNTALAIARRLG 790

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

>sp|Q01484|ANK2_HUMAN Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4

 Score =  117 bits (294), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 154/665 (23%), Positives = 271/665 (40%), Gaps = 77/665 (11%)

Query: 55  NFVGTVSLRAKKTELVLHDEAAHEVRVVYEEFKTEVTALFLAAHAGNLTLVRKLLSLGAN 114
           N +  + L AK+  + L  E       V    K   TAL +A+ AG   +V+ L+  GAN
Sbjct: 63  NGLNALHLAAKEGHVGLVQELLGRGSSVDSATKKGNTALHIASLAGQAEVVKVLVKEGAN 122

Query: 115 VNQKLFRGYATT-AAVREDHLEILDLLIKAGACQEACEE----ALLETSYLGQARPAELL 169
           +N +   G+     A +E+H++++  L++ GA Q    E     L      G  +   +L
Sbjct: 123 INAQSQNGFTPLYMAAQENHIDVVKYLLENGANQSTATEDGFTPLAVALQQGHNQAVAIL 182

Query: 170 MATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNA 229
           +  D  + +V + AL  A  +        L++   +A+   ++++  +  +        A
Sbjct: 183 LEND-TKGKVRLPALHIAARKDDTKSAALLLQNDHNADVQSKMMVNRTTESGFTPLHIAA 241

Query: 230 LVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWD--------------MDTGEEL--RV 273
             G      ++V  LLL  G  +D   R G                   +D G ++  + 
Sbjct: 242 HYG-----NVNVATLLLNRGAAVDFTARNGITPLHVASKRGNTNMVKLLLDRGGQIDAKT 296

Query: 274 GAGLAEDYCITWCA----VEYFESSGA-----------ILHM------------LFQHIS 306
             GL   +C         VE     GA            LHM            L QH +
Sbjct: 297 RDGLTPLHCAARSGHDQVVELLLERGAPLLARTKNGLSPLHMAAQGDHVECVKHLLQHKA 356

Query: 307 P--NILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAK 364
           P  ++  +  T +H A  C + R  +LLL    DK       +     P+H+A +    K
Sbjct: 357 PVDDVTLDYLTALHVAAHCGHYRVTKLLL----DKRANPNARALNGFTPLHIACKKNRIK 412

Query: 365 ILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAK 424
           ++  L+  G +I + T +G T   + A   H   +  L   GA   + N  G+ A  +A 
Sbjct: 413 VMELLVKYGASIQAITESGLTPIHVAAFMGHLNIVLLLLQNGASPDVTNIRGETALHMAA 472

Query: 425 SSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQD 484
            +    G  + V   +R+G ++ +      +PL   ++    + ++ L++      D   
Sbjct: 473 RA----GQVEVVRCLLRNGALVDARAREEQTPLHIASRLGKTEIVQLLLQHM-AHPDAAT 527

Query: 485 ADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYA 544
            +G++   I+A  G V+   +LL AGA   L  K G T + +A    + +V  +++L+  
Sbjct: 528 TNGYTPLHISAREGQVDVASVLLEAGAAHSLATKKGFTPLHVAAKYGSLDV-AKLLLQRR 586

Query: 545 LEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQ 604
                 G  G   LH AA   +  +   L+ +    +A+  +GYTPL +AAK     +  
Sbjct: 587 AAADSAGKNGLTPLHVAAHYDNQKVALLLLEKGASPHATAKNGYTPLHIAAKKNQMQIAS 646

Query: 605 LLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLD-GTYVKKHTKCGK 663
            L++ GA+ +I   +  T L LA + G+ +           +TL+LD G  +   TK G 
Sbjct: 647 TLLNYGAETNIVTKQGVTPLHLASQEGHTD----------MVTLLLDKGANIHMSTKSGL 696

Query: 664 GSPHV 668
            S H+
Sbjct: 697 TSLHL 701

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes. Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Homo sapiens (taxid: 9606)

>sp|Q8C8R3|ANK2_MOUSE Ankyrin-2 OS=Mus musculus GN=Ank2 PE=1 SV=2

 Score =  115 bits (289), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 124/545 (22%), Positives = 219/545 (40%), Gaps = 108/545 (19%)

Query: 90  VTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATT-AAVREDHLEILDLLIKAGACQE 148
           +TAL +AAH G+  + + LL   AN N +   G+     A +++ +++++LL+K GA  +
Sbjct: 366 LTALHVAAHCGHYRVTKLLLDKRANPNARALNGFTPLHIACKKNRIKVMELLVKYGASIQ 425

Query: 149 ACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDANA 208
           A  E+ L                         +H    A F G +N+V  L++ G   + 
Sbjct: 426 AITESGL-----------------------TPIHV---AAFMGHLNIVLLLLQNGASPDV 459

Query: 209 IDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWDMDTG 268
            +       + ALH          A  + Q+ VVR LL+ G  +D + R        +  
Sbjct: 460 TN----IRGETALHM---------AARAGQVEVVRCLLRNGALVDARAR--------EEQ 498

Query: 269 EELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHIS-PNI-LHNGRTLIHHAILCNNA 326
             L + + L +                 I+ +L QH++ P+    NG T +H +      
Sbjct: 499 TPLHIASRLGKT---------------EIVQLLLQHMAHPDAATTNGYTPLHISAREGQV 543

Query: 327 RAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETA 386
               +LL             +K    P+H+AA+ GS  + + L+      +S    G T 
Sbjct: 544 DVASVLLEAGAAHSLA----TKKGFTPLHVAAKYGSLDVAKLLLQRRAAADSAGKNGLTP 599

Query: 387 AMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNII 446
             + A Y +++    L  +GA            ++ AK+                     
Sbjct: 600 LHVAAHYDNQKVALLLLEKGAS----------PHATAKNG-------------------- 629

Query: 447 QSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLL 506
                  ++PL    + N +     L+ +   + +     G +   +A+  GH +   LL
Sbjct: 630 -------YTPLHIAAKKNQMQIASTLLNYG-AETNTVTKQGVTPLHLASQEGHTDMVTLL 681

Query: 507 LHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGD 566
           L  GANI +  K G T++ LA       V + ++ ++  +       G+  L  A   G+
Sbjct: 682 LDKGANIHMSTKSGLTSLHLAAQEDKVNVAD-ILTKHGADRDAYTKLGYTPLIVACHYGN 740

Query: 567 FDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALAL 626
             +V+ L+ +  +VNA   +GYTPL  AA+ GH  +  +L+  GAK +   A   TALA+
Sbjct: 741 VKMVNFLLKQGANVNAKTKNGYTPLHQAAQQGHTHIINVLLQHGAKPNATTANGNTALAI 800

Query: 627 ARENG 631
           A+  G
Sbjct: 801 AKRLG 805

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes (By similarity). Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Mus musculus (taxid: 10090)

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score =  111 bits (277), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 149/598 (24%), Positives = 239/598 (39%), Gaps = 73/598 (12%)

Query: 90  VTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATT-AAVREDHLEILDLLIKAGACQE 148
           +T L +A+  GN+ +VR LL  GA +  K          A R  H+ I ++L+  GA  +
Sbjct: 240 ITPLHIASRRGNVIMVRLLLDRGAQIETKTKDELTPLHCAARNGHVRISEILLDHGAPIQ 299

Query: 149 ACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDANA 208
           A  +  L   ++  A+   L    D +R  +   A +       +  +     CG   + 
Sbjct: 300 AKTKNGLSPIHMA-AQGDHL----DCVRLLLQYDAEIDDITLDHLTPLHVAAHCG--HHR 352

Query: 209 IDRVLL-QSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWDMDT 267
           + +VLL + +KP   A      L  A     + V+ LLL+ G  +D     G        
Sbjct: 353 VAKVLLDKGAKPNSRALNGFTPLHIACKKNHVRVMELLLKTGASIDAVTESG-------- 404

Query: 268 GEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQH-ISPNILH-NGRTLIHHAILCNN 325
                          +T   V  F     I+  L Q   SPN+ +    T +H A    +
Sbjct: 405 ---------------LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGH 449

Query: 326 ARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGET 385
               + LL         V   +K +  P+H AAR+G   +++ L+    N N  T AG T
Sbjct: 450 TEVAKYLLQNKAK----VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHT 505

Query: 386 AAMICARYKH-EECLKFLASE----------------GADLGLINYA------GQCANSI 422
              I AR  H E  L  L  E                 A  G +  A          N+ 
Sbjct: 506 PLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAA 565

Query: 423 AKSSRWTL--GFQQAVVDSIR----SGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWA 476
            K+    L        +D ++     G    S   + ++PL    + N V+  + L+++ 
Sbjct: 566 GKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG 625

Query: 477 DVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEV- 535
               + +   G +   +AA  GH E   LLL   AN  L NK G T + L  + + G V 
Sbjct: 626 G-SANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHL--VAQEGHVP 682

Query: 536 LEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAA 595
           +  V++++ +        G+  LH A+  G+  LV  L+    DVNA    GY+PL  AA
Sbjct: 683 VADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAA 742

Query: 596 KSGHGSVCQLLISSGAKCDIENARNETALALARENG--NGNEAENVILDELALTLVLD 651
           + GH  +  LL+ +GA  +  ++   T LA+A+  G  +  +   V+ DE +  LV D
Sbjct: 743 QQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSD 800

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

>sp|Q02357|ANK1_MOUSE Ankyrin-1 OS=Mus musculus GN=Ank1 PE=1 SV=2

 Score =  108 bits (270), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 140/589 (23%), Positives = 240/589 (40%), Gaps = 82/589 (13%)

Query: 87  KTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATT-AAVREDHLEILDLLIKAGA 145
           K E+T L  AA  G++ +   LL  GA +  K   G +    A + DHL+ + LL++  A
Sbjct: 266 KDELTPLHCAARNGHVRISEILLDHGAPIQAKTKNGLSPIHMAAQGDHLDCVRLLLQYNA 325

Query: 146 CQEACE----EALLETSYLGQARPAELLM---ATDLIRPQVSVHALVSACFRGFVNVVDT 198
             +         L   ++ G  R A++L+   A    R       L  AC +  + V++ 
Sbjct: 326 EIDDITLDHLTPLHVAAHCGHHRVAKVLLDKGAKPNSRALNGFTPLHIACKKNHIRVMEL 385

Query: 199 LIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAG-------VK 251
           L+K G   +A+     +S    LH          A     + +V+ LLQ G       VK
Sbjct: 386 LLKTGASIDAV----TESGLTPLHV---------ASFMGHLPIVKNLLQRGASPNVSNVK 432

Query: 252 MDIKVRMGAWSWDMDTGEEL-----RVGAGLAEDYCITWCAVEYFESSGAILHMLFQHIS 306
           ++  + M A +   +  + L     +  A   +D     CA      +G +  +L    S
Sbjct: 433 VETPLHMAARAGHTEVAKYLLQNKAKANAKAKDDQTPLHCAAR-IGHTGMVKLLLENGAS 491

Query: 307 PNILHN-GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKI 365
           PN+    G T +H A    +      LL    +KE      +K    P+H+AA+ G  ++
Sbjct: 492 PNLATTAGHTPLHTAAREGHVDTALALL----EKEASQACMTKKGFTPLHVAAKYGKVRL 547

Query: 366 LRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKS 425
              L+    + N+    G T   +   + + + +K L   G                  S
Sbjct: 548 AELLLEHDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS--------------PHS 593

Query: 426 SRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDA 485
             W                       + ++PL    + N ++  + L+++     + +  
Sbjct: 594 PAW-----------------------NGYTPLHIAAKQNQIEVARSLLQYGG-SANAESV 629

Query: 486 DGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEV-LEQVILEYA 544
            G +   +AA  GH E   LLL   AN  L NK G T + L  +++ G V +  V++++ 
Sbjct: 630 QGVTPLHLAAQEGHTEMVALLLSKQANGNLGNKSGLTPLHL--VSQEGHVPVADVLIKHG 687

Query: 545 LEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQ 604
           +        G+  LH A+  G+  LV  L+    DVNA    GY+PL  AA+ GH  +  
Sbjct: 688 VTVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVT 747

Query: 605 LLISSGAKCDIENARNETALALARENG--NGNEAENVILDELALTLVLD 651
           LL+ +GA  +  ++   T LA+A+  G  +  +   V+ DE ++ LV D
Sbjct: 748 LLLKNGASPNEVSSNGTTPLAIAKRLGYISVTDVLKVVTDETSVVLVSD 796

Attaches integral membrane proteins to cytoskeletal elements; binds to the erythrocyte membrane protein band 4.2, to Na-K ATPase, to the lymphocyte membrane protein GP85, and to the cytoskeletal proteins fodrin, tubulin, vimentin and desmin. Erythrocyte ankyrins also link spectrin (beta chain) to the cytoplasmic domain of the erythrocytes anion exchange protein; they retain most or all of these binding functions. In skeletal muscle, isoform Mu7 together with obscurin may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Mus musculus (taxid: 10090)

>sp|Q502K3|ANR52_DANRE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Danio rerio GN=ankrd52 PE=2 SV=1

 Score =  102 bits (254), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 120/470 (25%), Positives = 188/470 (40%), Gaps = 69/470 (14%)

Query: 184 LVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVR 243
           L +A + G V+++D LI  G + NA D V L               L  A  SR    V 
Sbjct: 45  LHAAAWLGDVHIMDLLISAGANVNAKDHVWL-------------TPLHRAAASRNERAVG 91

Query: 244 LLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQ 303
           LLL+ G   D+  R   W         L + A      C+                 L  
Sbjct: 92  LLLRKGA--DVTARDKYWQ------TPLHIAAANRATRCVE---------------TLLP 128

Query: 304 HISPNIL--HNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLG 361
           H+S   +    GR  +HHA        V+LLLN    K   +    K + +PIH AA LG
Sbjct: 129 HVSSLNMADRTGRAPLHHAAQSGYQEMVKLLLN----KGANLSASDKKDRQPIHWAAYLG 184

Query: 362 SAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANS 421
             ++++ L+S G + + +   G T     A   H + +K+L   GA++   N  G  A  
Sbjct: 185 HLEVVKLLVSQGSDKSCKDKRGYTPLHAAAASGHVDVVKYLLRNGAEIDEPNAFGNTALH 244

Query: 422 IAKSSRWTLGFQQAVVDSI--RSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVD 479
           +A  +      Q+AV + +  R  N+ Q  N   ++PL     + +     +L+     D
Sbjct: 245 VACYT-----GQEAVANELVNRGANVNQP-NHRGYTPLHLAAVSTNGALCLELLVNNGAD 298

Query: 480 LDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQV 539
           ++ Q  +G S   +AA  G     ++L+  G  I   ++YG T + +A      E+L   
Sbjct: 299 VNMQSKEGKSPLHMAAIHGRFTRSQILIQNGGEIDCVDRYGNTPLHVAA-KYGHELLIST 357

Query: 540 ILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRC------------------YDVN 581
           ++    +  ++G  G + LH A   G  D    L+S                    +D+N
Sbjct: 358 LMTNGADTARQGIHGMFPLHLAVLYGSSDCCRKLLSSGQLYSIVLSMSKEHVLSAGFDIN 417

Query: 582 ASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENG 631
             D  G T L  AA  G+     LL+SSGA  + ++    T L  A  NG
Sbjct: 418 TPDNFGRTCLHAAASGGNIECLNLLLSSGADMNKKDKFGRTPLHYAAANG 467

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Danio rerio (taxid: 7955)

>sp|Q9ULJ7|ANR50_HUMAN Ankyrin repeat domain-containing protein 50 OS=Homo sapiens GN=ANKRD50 PE=1 SV=4

 Score = 95.5 bits (236), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 150/583 (25%), Positives = 230/583 (39%), Gaps = 108/583 (18%)

Query: 105  VRKLLSLGANVNQKLFRGYATTA-AVREDHLEILDLLIKAGACQEACEEALLETSYLGQA 163
            +R LL  GA+VNQ    G    A A     L++++LL+  GA  E  E+A   T      
Sbjct: 528  IRTLLDNGASVNQCDSNGRTLLANAAYSGSLDVVNLLVSRGADLE-IEDAHGHT------ 580

Query: 164  RPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHA 223
                                L  A  +G   VV+ LI CG + N  D+            
Sbjct: 581  -------------------PLTLAARQGHTKVVNCLIGCGANINHTDQ------------ 609

Query: 224  NFDCNALVGAVVSRQISVVRLLLQAGVKMD-------IKVRMGAWSWDMD-TGEELRVGA 275
                 AL  A       VV  LL AGVK+D         +R  AW    D     L+ GA
Sbjct: 610  -DGWTALRSAAWGGHTEVVSALLYAGVKVDCADADSRTALRAAAWGGHEDIVLNLLQHGA 668

Query: 276  GL--AEDYCITWCAVEYFESSGAILHMLFQHISPNILH---NGRTLIHHAILC-----NN 325
             +  A++   T      +     I+  L  H    + H   +GRT +  A LC      +
Sbjct: 669  EVNKADNEGRTALIAAAYMGHREIVEHLLDH-GAEVNHEDVDGRTALSVAALCVPASKGH 727

Query: 326  ARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGET 385
            A  V LL    +D+   V    K  + P+ +AA  G   ++  L+  G +++     G T
Sbjct: 728  ASVVSLL----IDRGAEVDHCDKDGMTPLLVAAYEGHVDVVDLLLEGGADVDHTDNNGRT 783

Query: 386  AAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKS-------------------- 425
              +  A   H   +  L   GA +  I+  G+   SIA +                    
Sbjct: 784  PLLAAASMGHASVVNTLLFWGAAVDSIDSEGRTVLSIASAQGNVEVVRTLLDRGLDENHR 843

Query: 426  --SRWT----LGFQ------QAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLI 473
              + WT      F+      +A+++     N I   N  R  P +  +Q    D ++ L+
Sbjct: 844  DDAGWTPLHMAAFEGHRLICEALIEQGARTNEI--DNDGRI-PFILASQEGHYDCVQILL 900

Query: 474  EWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNG 533
            E    ++D++  DG +A  +AA  GH +   LL   GA++  ++  G   + +  L    
Sbjct: 901  E-NKSNIDQRGYDGRNALRVAALEGHRDIVELLFSHGADVNCKDADGRPTLYILALEN-- 957

Query: 534  EVLEQVILEYALEEGQKGSA----GFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYT 589
               +  + EY LE G    A    G  ALH +  +G  ++V  L++   DVNA+D +  +
Sbjct: 958  ---QLTMAEYFLENGANVEASDAEGRTALHVSCWQGHMEMVQVLIAYHADVNAADNEKRS 1014

Query: 590  PLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGN 632
             L  AA  GH  V QLLI  GA  D    +  TAL +A + G+
Sbjct: 1015 ALQSAAWQGHVKVVQLLIEHGAVVDHTCNQGATALCIAAQEGH 1057

Homo sapiens (taxid: 9606)

>sp|Q5ZLC8|ANR52_CHICK Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Gallus gallus GN=ANKRD52 PE=2 SV=1

 Score = 94.7 bits (234), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 120/469 (25%), Positives = 186/469 (39%), Gaps = 65/469 (13%)

Query: 184 LVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVR 243
           L +A + G V +++ LI  G + NA D V L               L  A  SR    + 
Sbjct: 45  LHTAAYIGDVAILELLILSGANVNAKDTVWL-------------TPLHRAAASRNEKALH 91

Query: 244 LLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQ 303
           LLL+     D+  R   W         L V A      C+            AI+ +L  
Sbjct: 92  LLLKHSA--DVNARDKYWQ------TPLHVAAANRATKCVE-----------AIIPLLS- 131

Query: 304 HISPNIL-HNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGS 362
             + N+    GRT +HHA+   +   V LLLN    K   + T  K + +PIH AA LG 
Sbjct: 132 --TVNVADRTGRTALHHAVHSGHLEMVNLLLN----KGASLSTCDKKDRQPIHWAAFLGH 185

Query: 363 AKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSI 422
            ++L+ L++ G ++  +   G T     A     E ++ L   G ++   N  G  A  I
Sbjct: 186 LEVLKLLVARGADVMCKDKKGYTLLHTAAASGQIEVVRHLLRLGVEIDEPNSFGNTALHI 245

Query: 423 AKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDE 482
           A      +G      + +  G  +   N   F+PL F   + +     +L+     D++ 
Sbjct: 246 A----CYMGQDAVANELVNYGANVNQPNEKGFTPLHFAAVSTNGALCLELLVNNGADVNF 301

Query: 483 QDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNG-EVLEQVIL 541
           Q  +G S   +AA  G     ++L+  G+ I   +KYG T + +A   R G E+L   ++
Sbjct: 302 QSKEGKSPLHMAAIHGRFTRSQILIQNGSEIDCADKYGNTPLHVAA--RYGHELLISTLM 359

Query: 542 EYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSR------------------CYDVNAS 583
               +  ++G    + LH A   G  D    L+S                    +D+N  
Sbjct: 360 TNGADTARRGIHDMFPLHLAVLFGFSDCCRKLLSSGQLYSIVSSLSNEHVLSAGFDINTP 419

Query: 584 DADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGN 632
           D  G T L  AA  G+     LL+SSGA     +    T L  A  NG+
Sbjct: 420 DNLGRTCLHAAASGGNVECLNLLLSSGADLRRRDKFGRTPLHYAAANGS 468

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Gallus gallus (taxid: 9031)

>sp|Q5F478|ANR44_CHICK Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Gallus gallus GN=ANKRD44 PE=2 SV=1

 Score = 92.8 bits (229), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 116/447 (25%), Positives = 182/447 (40%), Gaps = 49/447 (10%)

Query: 187 ACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLL 246
           A F G  ++++ LI  G   NA D + L               L  AV SR    V++L+
Sbjct: 48  ASFLGDADIIELLILSGARVNAKDNMWL-------------TPLHRAVASRSEEAVQVLI 94

Query: 247 QAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHIS 306
           +     D+  R   W         L V A           A +  + +  I+ ML    S
Sbjct: 95  KHSA--DVNARDKNWQ------TPLHVAA-----------ANKALKCAEIIIPMLS---S 132

Query: 307 PNIL-HNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKI 365
            N+    GRT +HHA L  +   V LLL     K   +  + K + R +H AA +G  ++
Sbjct: 133 VNVSDRGGRTALHHAALNGHVEMVNLLLA----KGANINAFDKKDRRALHWAAYMGHLEV 188

Query: 366 LRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKS 425
           +  LI+ G  +  +   G T     A       +K L + G ++  +N  G  A  IA  
Sbjct: 189 VALLINHGAEVTCKDKKGYTPLHAAASNGQINIVKHLLNLGVEIDEMNIYGNTALHIA-- 246

Query: 426 SRWTLGFQQAVVDS-IRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQD 484
                  Q +VV+  I  G  +   N + F+PL F   +       +L+     D++ Q 
Sbjct: 247 ---CYNGQDSVVNELIDYGANVNQPNNNGFTPLHFAAASTHGALCLELLVNNGADVNIQS 303

Query: 485 ADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNG-EVLEQVILEY 543
            DG S   + A  G     + L+  G  I   +K G T + +A   R G E+L   ++  
Sbjct: 304 KDGKSPLHMTAVHGRFTRSQTLIQNGGEIDCVDKDGNTPLHVAA--RYGHELLINTLITS 361

Query: 544 ALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVC 603
             +  + G    + LH AA     D    L+S  ++++  D+ G T L  AA  G+    
Sbjct: 362 GADTAKCGIHNMFPLHLAALNAHSDCCRKLLSSGFEIDTPDSFGRTCLHAAAAGGNVECI 421

Query: 604 QLLISSGAKCDIENARNETALALAREN 630
           +LL SSGA  + ++ R  T L  A  N
Sbjct: 422 KLLQSSGADFNKKDKRGRTPLHYAAAN 448

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	758
359473567	761	PREDICTED: ankyrin-2-like [Vitis vinifer	0.989	0.985	0.717	0.0
297738379	762	unnamed protein product [Vitis vinifera]	0.989	0.984	0.717	0.0
356569188	761	PREDICTED: ankyrin-1-like [Glycine max]	0.970	0.967	0.667	0.0
147840488	829	hypothetical protein VITISV_018267 [Viti	0.985	0.901	0.671	0.0
359488597	829	PREDICTED: ankyrin repeat domain-contain	0.985	0.901	0.671	0.0
147782178	709	hypothetical protein VITISV_017131 [Viti	0.923	0.987	0.708	0.0
255547800	647	ankyrin repeat-containing protein, putat	0.836	0.979	0.740	0.0
357463057	768	Ankyrin repeat domain-containing protein	0.969	0.957	0.641	0.0
449441380	753	PREDICTED: ankyrin-2-like [Cucumis sativ	0.965	0.972	0.636	0.0
357503833	745	Ankyrin repeat domain-containing protein	0.959	0.975	0.628	0.0

>gi|359473567|ref|XP_002265470.2| PREDICTED: ankyrin-2-like [Vitis vinifera]

 Score = 1115 bits (2883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 545/760 (71%), Positives = 633/760 (83%), Gaps = 10/760 (1%)

Query: 1   MMFGNPAGAVFLAGKQQVFPVDYEAEVSQRLVDAAHVNDVKRANECIGDPFVDVNFVGTV 60
           M+F N AG  FLAGKQ VFP+DY AEVSQ+LVDA+H ND+K A +CI DPFVDV+F+GTV
Sbjct: 1   MVFSN-AGTGFLAGKQ-VFPIDYAAEVSQKLVDASHRNDLKSALDCIADPFVDVSFIGTV 58

Query: 61  SLRAKKTELVLHDEAAHEVRVVYEEFKTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLF 120
            LRA+KTE+VLHDE+ HEVRV +EEFKTEVTALFLAAHAGN+ LVRKLLS+GANVNQKLF
Sbjct: 59  YLRARKTEVVLHDESPHEVRVEFEEFKTEVTALFLAAHAGNVALVRKLLSVGANVNQKLF 118

Query: 121 RGYATTAAVREDHLEILDLLIKAGACQEACEEALLETSYLGQARPAELLMATDLIRPQVS 180
           RGYATTAAVRE HLEIL  LI AGA Q ACEEALLE SYLG+ARPAELLM +++IRP  +
Sbjct: 119 RGYATTAAVREGHLEILQTLINAGASQPACEEALLEASYLGRARPAELLMGSEMIRPYAA 178

Query: 181 VHALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQIS 240
           VHALV+AC RGFV+VVDTLIKCGVDANA DR+LLQSSKP +H N +CNAL  A+VSRQ+S
Sbjct: 179 VHALVTACCRGFVDVVDTLIKCGVDANATDRMLLQSSKPFMHTNVNCNALAVAIVSRQVS 238

Query: 241 VVRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHM 300
           VVRLLLQAGV++DIKVR+GAWSWD  TGEE RVG GLAE Y ITWCAVEYFE+SGAIL M
Sbjct: 239 VVRLLLQAGVRVDIKVRLGAWSWDTATGEEFRVGVGLAEPYSITWCAVEYFEASGAILRM 298

Query: 301 LFQHISPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARL 360
           L QH S N  H GRTL+HHAILC N  A+++LLNC  D E PV+T SKTELRPIHLAA+ 
Sbjct: 299 LLQHHSVNNHHLGRTLVHHAILCGNPGALDVLLNCGADVELPVKTTSKTELRPIHLAAQF 358

Query: 361 GSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCAN 420
           G AKIL+ LI+AGCN+NS TA+GE+A MIC RYKH+ECL+ LA+ GAD GL+N AGQCA 
Sbjct: 359 GLAKILQCLINAGCNLNSPTASGESALMICTRYKHDECLRVLAAAGADFGLVNAAGQCAC 418

Query: 421 SIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDL 480
           SIA S RWTLGF+QAV+D I +G+ + SSN S FSPL+F TQAND  ALKKLIE  D+D+
Sbjct: 419 SIASSIRWTLGFRQAVLDVIHAGSTVASSNTSIFSPLIFATQANDAVALKKLIERPDIDI 478

Query: 481 DEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVI 540
           DEQD +G SAAMIAAA G V+AFRLL++AGAN+KLQNKYGETA+TL+E N N ++ E+VI
Sbjct: 479 DEQDQNGLSAAMIAAAGGQVDAFRLLVYAGANVKLQNKYGETALTLSEANHNADLFEKVI 538

Query: 541 LEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHG 600
           LEYALE G   SAGFY LH AA+ GD DL  TL +R YD+N +D DGYTPLMLAA+ GHG
Sbjct: 539 LEYALERGNHRSAGFYPLHCAARCGDLDLARTLANRGYDINFADTDGYTPLMLAARGGHG 598

Query: 601 SVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHTK 660
           S+C+ LIS GA C+I+N R+ETAL LAR+NG GN AE VILDELA TLVLDG  VKKHTK
Sbjct: 599 SMCEFLISCGAICNIKNERHETALVLARKNGFGNGAERVILDELARTLVLDGAPVKKHTK 658

Query: 661 CGKGSPHVKLLKM--------WGKSRKRNVVCRAAEVGPSDTFRWNRRRKFDVEEPGMFH 712
            GKG+PH KLLKM        WGKS KRNV+CR AE+GPS +FRWNRRRK D +EPG+FH
Sbjct: 659 RGKGTPHCKLLKMVDGIGVLRWGKSSKRNVICRGAELGPSTSFRWNRRRKIDADEPGLFH 718

Query: 713 VVTTQNKEVHFVCQGGLEMADLWVRGIRLVTGQAIFGKMQ 752
           V+TT+NKEVHFVC+GG+E+A+LWVRGI+LVT +AIFGK Q
Sbjct: 719 VMTTKNKEVHFVCEGGIEVAELWVRGIKLVTREAIFGKKQ 758

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738379|emb|CBI27580.3| unnamed protein product [Vitis vinifera]

 Score = 1115 bits (2883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 545/760 (71%), Positives = 633/760 (83%), Gaps = 10/760 (1%)

Query: 1   MMFGNPAGAVFLAGKQQVFPVDYEAEVSQRLVDAAHVNDVKRANECIGDPFVDVNFVGTV 60
           M+F N AG  FLAGKQ VFP+DY AEVSQ+LVDA+H ND+K A +CI DPFVDV+F+GTV
Sbjct: 2   MVFSN-AGTGFLAGKQ-VFPIDYAAEVSQKLVDASHRNDLKSALDCIADPFVDVSFIGTV 59

Query: 61  SLRAKKTELVLHDEAAHEVRVVYEEFKTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLF 120
            LRA+KTE+VLHDE+ HEVRV +EEFKTEVTALFLAAHAGN+ LVRKLLS+GANVNQKLF
Sbjct: 60  YLRARKTEVVLHDESPHEVRVEFEEFKTEVTALFLAAHAGNVALVRKLLSVGANVNQKLF 119

Query: 121 RGYATTAAVREDHLEILDLLIKAGACQEACEEALLETSYLGQARPAELLMATDLIRPQVS 180
           RGYATTAAVRE HLEIL  LI AGA Q ACEEALLE SYLG+ARPAELLM +++IRP  +
Sbjct: 120 RGYATTAAVREGHLEILQTLINAGASQPACEEALLEASYLGRARPAELLMGSEMIRPYAA 179

Query: 181 VHALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQIS 240
           VHALV+AC RGFV+VVDTLIKCGVDANA DR+LLQSSKP +H N +CNAL  A+VSRQ+S
Sbjct: 180 VHALVTACCRGFVDVVDTLIKCGVDANATDRMLLQSSKPFMHTNVNCNALAVAIVSRQVS 239

Query: 241 VVRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHM 300
           VVRLLLQAGV++DIKVR+GAWSWD  TGEE RVG GLAE Y ITWCAVEYFE+SGAIL M
Sbjct: 240 VVRLLLQAGVRVDIKVRLGAWSWDTATGEEFRVGVGLAEPYSITWCAVEYFEASGAILRM 299

Query: 301 LFQHISPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARL 360
           L QH S N  H GRTL+HHAILC N  A+++LLNC  D E PV+T SKTELRPIHLAA+ 
Sbjct: 300 LLQHHSVNNHHLGRTLVHHAILCGNPGALDVLLNCGADVELPVKTTSKTELRPIHLAAQF 359

Query: 361 GSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCAN 420
           G AKIL+ LI+AGCN+NS TA+GE+A MIC RYKH+ECL+ LA+ GAD GL+N AGQCA 
Sbjct: 360 GLAKILQCLINAGCNLNSPTASGESALMICTRYKHDECLRVLAAAGADFGLVNAAGQCAC 419

Query: 421 SIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDL 480
           SIA S RWTLGF+QAV+D I +G+ + SSN S FSPL+F TQAND  ALKKLIE  D+D+
Sbjct: 420 SIASSIRWTLGFRQAVLDVIHAGSTVASSNTSIFSPLIFATQANDAVALKKLIERPDIDI 479

Query: 481 DEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVI 540
           DEQD +G SAAMIAAA G V+AFRLL++AGAN+KLQNKYGETA+TL+E N N ++ E+VI
Sbjct: 480 DEQDQNGLSAAMIAAAGGQVDAFRLLVYAGANVKLQNKYGETALTLSEANHNADLFEKVI 539

Query: 541 LEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHG 600
           LEYALE G   SAGFY LH AA+ GD DL  TL +R YD+N +D DGYTPLMLAA+ GHG
Sbjct: 540 LEYALERGNHRSAGFYPLHCAARCGDLDLARTLANRGYDINFADTDGYTPLMLAARGGHG 599

Query: 601 SVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHTK 660
           S+C+ LIS GA C+I+N R+ETAL LAR+NG GN AE VILDELA TLVLDG  VKKHTK
Sbjct: 600 SMCEFLISCGAICNIKNERHETALVLARKNGFGNGAERVILDELARTLVLDGAPVKKHTK 659

Query: 661 CGKGSPHVKLLKM--------WGKSRKRNVVCRAAEVGPSDTFRWNRRRKFDVEEPGMFH 712
            GKG+PH KLLKM        WGKS KRNV+CR AE+GPS +FRWNRRRK D +EPG+FH
Sbjct: 660 RGKGTPHCKLLKMVDGIGVLRWGKSSKRNVICRGAELGPSTSFRWNRRRKIDADEPGLFH 719

Query: 713 VVTTQNKEVHFVCQGGLEMADLWVRGIRLVTGQAIFGKMQ 752
           V+TT+NKEVHFVC+GG+E+A+LWVRGI+LVT +AIFGK Q
Sbjct: 720 VMTTKNKEVHFVCEGGIEVAELWVRGIKLVTREAIFGKKQ 759

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569188|ref|XP_003552787.1| PREDICTED: ankyrin-1-like [Glycine max]

 Score = 1025 bits (2651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/745 (66%), Positives = 600/745 (80%), Gaps = 9/745 (1%)

Query: 15  KQQVFPVDYEAEVSQRLVDAAHVNDVKRANECIGDPFVDVNFVGTVSLRAKKTELVLHDE 74
           ++QVFPVDYE E+SQRLVDAAH  D   A ECI +P VDVNFVGTVS ++K TE+VL DE
Sbjct: 12  RKQVFPVDYETEISQRLVDAAHYGDTDAAFECIANPLVDVNFVGTVSFKSKTTEIVLQDE 71

Query: 75  AAHEVRVVYEEFKTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTAAVREDHL 134
           + H V   YEEFKTE+TALFLAAH GNL+L+RKLL++GANVN +LFRGYATTA+VRE HL
Sbjct: 72  SPHRVNSAYEEFKTELTALFLAAHTGNLSLLRKLLNVGANVNMRLFRGYATTASVREGHL 131

Query: 135 EILDLLIKAGACQEACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVN 194
           +IL++LI AGA Q ACEEAL+E SYLG+AR AELLM ++++RPQV+VHALVSAC RGFV 
Sbjct: 132 KILEVLINAGASQLACEEALMEASYLGRARFAELLMQSNMVRPQVAVHALVSACCRGFVE 191

Query: 195 VVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDI 254
           V+D LIK GVDANAIDR+LLQSSKP LHA+ DCNAL  AVVSRQI+VV LLLQ GV++DI
Sbjct: 192 VIDVLIKHGVDANAIDRILLQSSKPFLHASVDCNALFAAVVSRQINVVGLLLQVGVRLDI 251

Query: 255 KVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGR 314
           KV++GAW WD DTGEE RVG GLAE Y ITWCAVEYFES+GAILHML   +SPN LH GR
Sbjct: 252 KVKLGAWLWDTDTGEEFRVGVGLAEPYPITWCAVEYFESTGAILHMLLCQLSPNSLHTGR 311

Query: 315 TLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGC 374
           +L+HHAI+CNN +AV +LL    D E  VQT  +T   PIH+AARLGS  IL+ LI+ GC
Sbjct: 312 SLLHHAIICNNEKAVNILLKNGADAEVVVQTTEETNEHPIHMAARLGSCNILQCLINGGC 371

Query: 375 NINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQ 434
           N++S+T  G+TA MICARYKHE+CL  L S GADLG++N +G CA SIA   +WT  FQ+
Sbjct: 372 NLDSQTKCGDTALMICARYKHEKCLGVLVSAGADLGMVNSSGHCATSIANCVQWTKVFQR 431

Query: 435 AVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIA 494
           A++D IR+G +++SSN SRFS L+FVT+AND++ LKKLIE  ++DLDEQ+A+GFSAAMIA
Sbjct: 432 AILDVIRAGKVVKSSNTSRFSALLFVTRANDIEGLKKLIENNNIDLDEQNANGFSAAMIA 491

Query: 495 AAAGHVEAFRLLLHAGANI-KLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSA 553
           A  G+VEAF+LLL+AGA++  L+NKYG TA+ L ++++NGEV  +V+LEYAL++G  GS 
Sbjct: 492 AVGGNVEAFKLLLYAGADVTNLKNKYGLTALNLIDISQNGEVFHKVMLEYALKKGGNGSI 551

Query: 554 GFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKC 613
               LHRAA  GD ++ H L+   YDVNA D  GYTPLMLAA+   G +C+LLIS GAKC
Sbjct: 552 EVNPLHRAACYGDINIAHNLLKEGYDVNAFDGQGYTPLMLAARGCRGEMCELLISYGAKC 611

Query: 614 DIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHTKCGKGSPHVKLLKM 673
           DI+N R+ETAL LARENG  N+AE VILDE+A  LVL G  VKKHTKCGKGSPH KLL M
Sbjct: 612 DIQNERHETALLLARENGARNDAERVILDEVARKLVLHGGRVKKHTKCGKGSPHGKLLVM 671

Query: 674 --------WGKSRKRNVVCRAAEVGPSDTFRWNRRRKFDVEEPGMFHVVTTQNKEVHFVC 725
                   WGKS KRNV+C+ AEVGPS  FRWNRRRKFDV+EPGMFHVVTT+NK+VHFVC
Sbjct: 672 IGAAGILRWGKSSKRNVICKEAEVGPSAKFRWNRRRKFDVDEPGMFHVVTTKNKQVHFVC 731

Query: 726 QGGLEMADLWVRGIRLVTGQAIFGK 750
           +GG+EMA+LWVRGIRL T +AIFG+
Sbjct: 732 EGGVEMAELWVRGIRLATREAIFGQ 756

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147840488|emb|CAN68422.1| hypothetical protein VITISV_018267 [Vitis vinifera]

 Score = 1017 bits (2629), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/757 (67%), Positives = 610/757 (80%), Gaps = 10/757 (1%)

Query: 2   MFGNPAGAVFLAGKQQVFPVDYEAEVSQRLVDAAHVNDVKRANECIGDPFVDVNFVGTVS 61
           +FG+  G  FL GKQ VFPVD EAEVSQRL++A+H  D+K A ECI DPFVDVNFVG V 
Sbjct: 71  VFGHSGGG-FLTGKQ-VFPVDCEAEVSQRLLEASHSGDLKSALECIADPFVDVNFVGVVC 128

Query: 62  LRAKKTELVLHDEAAHEVRVVYEEFKTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFR 121
           L+AK+TE++L DE+A EVRV YEEFKTEVTALFLA H GN+ LVRKLLS+GA+VNQKLFR
Sbjct: 129 LKAKRTEVLLRDESAGEVRVEYEEFKTEVTALFLAVHTGNVALVRKLLSIGADVNQKLFR 188

Query: 122 GYATTAAVREDHLEILDLLIKAGACQEACEEALLETSYLGQARPAELLMATDLIRPQVSV 181
           G+ATTAAVRE HLEIL++L+KAGA Q ACEEALLE S  G+AR AELLMA+DLIRP ++V
Sbjct: 189 GFATTAAVREGHLEILEILLKAGASQPACEEALLEASCHGRARLAELLMASDLIRPHIAV 248

Query: 182 HALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISV 241
           HALV+AC RGFV+VVDTL+KCGVDANA DRVLLQSSKP+LH N DC ALV AVVSRQ+SV
Sbjct: 249 HALVTACCRGFVDVVDTLMKCGVDANATDRVLLQSSKPSLHTNLDCTALVAAVVSRQVSV 308

Query: 242 VRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHML 301
           VRLLLQAG + DIKVR+GAWSWDM +GEE RVGAGLAE Y ITWCAVEYFE SGAIL ML
Sbjct: 309 VRLLLQAGARTDIKVRLGAWSWDMASGEEFRVGAGLAEPYTITWCAVEYFEVSGAILRML 368

Query: 302 FQHISPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLG 361
            QH+SPN LH GRTL+HHAILC N  A+ +LLNC    E PV+T  KTE RPIH+AARLG
Sbjct: 369 LQHLSPNTLHFGRTLLHHAILCGNTGAINVLLNCGAHVESPVKTTGKTEFRPIHMAARLG 428

Query: 362 SAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANS 421
            A +L+ LI  GC++NS+T +GETA MICA+YK E+CL+ LA  GAD GL+N  GQ A+S
Sbjct: 429 LATVLQSLIDFGCDLNSKTDSGETALMICAKYKQEDCLRVLAMAGADFGLVNITGQSASS 488

Query: 422 IAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLD 481
           IA S+RWTLGFQQAV+D+IR+  + +SS+   FSPLMFV +  D+ ALK LI   +++LD
Sbjct: 489 IAVSNRWTLGFQQAVLDAIRARKVPRSSSFQVFSPLMFVARVGDIYALKTLIGQPEIELD 548

Query: 482 EQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVIL 541
            QD +G SA M+ A  GHVEAFRLL+ AGA++KL NKYGETAITL+ELN+N ++ E+V+L
Sbjct: 549 YQDDNGLSAVMVTAIEGHVEAFRLLVFAGADVKLSNKYGETAITLSELNQNHDLFEKVML 608

Query: 542 EYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGS 601
           E+ LE+G + + GFYALH AA+RGD D V  L SR YDVN  D DGYTPLMLAA+ GHGS
Sbjct: 609 EFTLEKGNRNAGGFYALHCAARRGDLDAVRLLTSRGYDVNVPDGDGYTPLMLAAREGHGS 668

Query: 602 VCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHTKC 661
           +C+LLIS GA  +++NAR ETAL+LAR+NG  N+AE VILD+LA  LVL G +V KHTK 
Sbjct: 669 MCELLISCGANTEVKNARGETALSLARKNGMKNDAECVILDQLARKLVLGGDWVLKHTKG 728

Query: 662 GKGSPHVKLLKM--------WGKSRKRNVVCRAAEVGPSDTFRWNRRRKFDVEEPGMFHV 713
           GKG+PH K +KM        WGKS +RNV+CR AE+GPS  F+ NR+R+   +EPG+F V
Sbjct: 729 GKGTPHGKEMKMMGALGVLRWGKSSRRNVICREAEMGPSSAFQKNRQRQGGADEPGLFRV 788

Query: 714 VTTQNKEVHFVCQGGLEMADLWVRGIRLVTGQAIFGK 750
           VTT+NKEVHFVC+GGLE A+LWVRGI+L+T +AIFGK
Sbjct: 789 VTTKNKEVHFVCEGGLEKAELWVRGIKLITREAIFGK 825

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488597|ref|XP_002270424.2| PREDICTED: ankyrin repeat domain-containing protein 17-like [Vitis vinifera] gi|296090241|emb|CBI40060.3| unnamed protein product [Vitis vinifera]

 Score = 1016 bits (2626), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/757 (67%), Positives = 609/757 (80%), Gaps = 10/757 (1%)

Query: 2   MFGNPAGAVFLAGKQQVFPVDYEAEVSQRLVDAAHVNDVKRANECIGDPFVDVNFVGTVS 61
           +FG+  G  FL GKQ VFPVD EAEVSQRL++A+H  D+K A ECI DPFVDVNFVG V 
Sbjct: 71  VFGHSGGG-FLTGKQ-VFPVDCEAEVSQRLLEASHSGDLKSALECIADPFVDVNFVGVVC 128

Query: 62  LRAKKTELVLHDEAAHEVRVVYEEFKTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFR 121
           L+AK+TE++L DE+A EVRV YEEFKTEVTALFLA H GN+ LVRKLLS+GA+VNQKLFR
Sbjct: 129 LKAKRTEVLLRDESAGEVRVEYEEFKTEVTALFLAVHTGNVALVRKLLSIGADVNQKLFR 188

Query: 122 GYATTAAVREDHLEILDLLIKAGACQEACEEALLETSYLGQARPAELLMATDLIRPQVSV 181
           G+ATTAAVRE HLEIL++L+KAGA Q ACEEALLE S  G+AR AELLMA+DLIRP ++V
Sbjct: 189 GFATTAAVREGHLEILEILLKAGASQPACEEALLEASCHGRARLAELLMASDLIRPHIAV 248

Query: 182 HALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISV 241
           HALV+AC RGFV+VVDTL+KCGVDANA DRVLLQSSKP+LH N DC ALV AVVSRQ+SV
Sbjct: 249 HALVTACCRGFVDVVDTLMKCGVDANATDRVLLQSSKPSLHTNLDCTALVAAVVSRQVSV 308

Query: 242 VRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHML 301
           VRLLLQAG + DIKVR+GAWSWDM +GEE RVGAGLAE Y ITWCAVEYFE SGAIL ML
Sbjct: 309 VRLLLQAGARTDIKVRLGAWSWDMASGEEFRVGAGLAEPYTITWCAVEYFEVSGAILRML 368

Query: 302 FQHISPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLG 361
            QH+SPN LH GRTL+HHAILC N  A+ +LLNC    E PV+T  KTE RPIH+AARLG
Sbjct: 369 LQHLSPNTLHFGRTLLHHAILCGNTGAINVLLNCGAHVESPVKTTGKTEFRPIHMAARLG 428

Query: 362 SAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANS 421
            A +L+ LI  GC++NS+T +GETA MICA+YK E+CL+ LA  GAD GL+N  GQ A+S
Sbjct: 429 LATVLQSLIDFGCDLNSKTDSGETALMICAKYKQEDCLRVLAMAGADFGLVNITGQSASS 488

Query: 422 IAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLD 481
           IA S+RWTLGFQQAV+D+IR+  + +SS+   FSPLMFV +  D+ ALK LI   +++LD
Sbjct: 489 IAVSNRWTLGFQQAVLDAIRARKVPRSSSFQVFSPLMFVARVGDIYALKTLIGQPEIELD 548

Query: 482 EQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVIL 541
            QD +G SA M+ A  GHVEAFRLL+ AGA++KL NKYGETAITL+ELN+N ++ E+V+L
Sbjct: 549 YQDDNGLSAVMVTAIEGHVEAFRLLVFAGADVKLSNKYGETAITLSELNQNHDLFEKVML 608

Query: 542 EYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGS 601
           E+ LE+G   + GFYALH AA+RGD D V  L SR YDVN  D DGYTPLMLAA+ GHGS
Sbjct: 609 EFTLEKGNHNAGGFYALHCAARRGDLDAVRLLTSRGYDVNVPDGDGYTPLMLAAREGHGS 668

Query: 602 VCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHTKC 661
           +C+LLIS GA  +++NAR ETAL+LAR+NG  N+AE VILD+LA  LVL G +V KHTK 
Sbjct: 669 MCELLISCGANTEVKNARGETALSLARKNGMKNDAECVILDQLARKLVLGGDWVLKHTKG 728

Query: 662 GKGSPHVKLLKM--------WGKSRKRNVVCRAAEVGPSDTFRWNRRRKFDVEEPGMFHV 713
           GKG+PH K +KM        WGKS +RNV+CR AE+GPS  F+ NR+R+   +EPG+F V
Sbjct: 729 GKGTPHGKEMKMMGALGVLRWGKSSRRNVICREAEMGPSSAFQKNRQRQGGADEPGLFRV 788

Query: 714 VTTQNKEVHFVCQGGLEMADLWVRGIRLVTGQAIFGK 750
           VTT+NKEVHFVC+GGLE A+LWVRGI+L+T +AIFGK
Sbjct: 789 VTTKNKEVHFVCEGGLEKAELWVRGIKLITREAIFGK 825

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147782178|emb|CAN63194.1| hypothetical protein VITISV_017131 [Vitis vinifera]

 Score = 1013 bits (2620), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/710 (70%), Positives = 580/710 (81%), Gaps = 10/710 (1%)

Query: 1   MMFGNPAGAVFLAGKQQVFPVDYEAEVSQRLVDAAHVNDVKRANECIGDPFVDVNFVGTV 60
           M+F N AG  FLAGKQ VFP+DY AEVSQ+LVDA+H ND+K A +CI DPFVDV+F+GTV
Sbjct: 1   MVFSN-AGTGFLAGKQ-VFPIDYAAEVSQKLVDASHRNDLKSALDCIADPFVDVSFIGTV 58

Query: 61  SLRAKKTELVLHDEAAHEVRVVYEEFKTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLF 120
            LRA+KTE+VLHDE+ HEVRV +EEFKTEVTALFLAAHAGN+ LVRKLLS+GANVNQKLF
Sbjct: 59  YLRARKTEVVLHDESPHEVRVEFEEFKTEVTALFLAAHAGNVALVRKLLSVGANVNQKLF 118

Query: 121 RGYATTAAVREDHLEILDLLIKAGACQEACEEALLETSYLGQARPAELLMATDLIRPQVS 180
           RGYATTAAVRE HLEIL  LI AGA Q ACEEALLE SYLG+ARPAELLM +++IRP  +
Sbjct: 119 RGYATTAAVREGHLEILQTLINAGASQPACEEALLEASYLGRARPAELLMGSEMIRPYAA 178

Query: 181 VHALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQIS 240
           VHALV+AC RGFV+VVDTLIKCGVDANA DR+LLQSSKP +H N +CNAL  A+VSRQ+S
Sbjct: 179 VHALVTACCRGFVDVVDTLIKCGVDANATDRMLLQSSKPFMHTNVNCNALAVAIVSRQVS 238

Query: 241 VVRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHM 300
           VVRLLLQAGV++DIKVR+GAWSWD  TGEE RVG GLAE Y ITWCAVEYFE+SGAIL M
Sbjct: 239 VVRLLLQAGVRVDIKVRLGAWSWDTATGEEFRVGVGLAEPYSITWCAVEYFEASGAILRM 298

Query: 301 LFQHISPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARL 360
           L QH S N  H GRTL+HHAILC N  A+++LLNC  D E PV+T SK ELRPIHLAA+ 
Sbjct: 299 LLQHHSVNNHHLGRTLVHHAILCGNPGALDVLLNCGADVELPVKTTSKXELRPIHLAAQF 358

Query: 361 GSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCAN 420
           G AKIL+ LI+AGCN+NS TA+GE+A MIC RYKHEECL+ LA+ GAD GL+N AGQCA 
Sbjct: 359 GLAKILQCLINAGCNLNSPTASGESALMICTRYKHEECLRVLAAAGADFGLVNAAGQCAC 418

Query: 421 SIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDL 480
           SIA S RWTLGF+QAV+D I +G+ + SSN S FSPL+F TQAND  ALKKLIE  D+D+
Sbjct: 419 SIASSIRWTLGFRQAVLDVIHAGSTVASSNTSIFSPLIFATQANDAVALKKLIERPDIDI 478

Query: 481 DEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVI 540
           DEQD +G SAAMIAAA G V+AFRLL++AGAN KLQNKYGETA+TL+E N N ++ E+VI
Sbjct: 479 DEQDQNGLSAAMIAAAGGQVDAFRLLVYAGANXKLQNKYGETALTLSEANHNADJFEKVI 538

Query: 541 LEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHG 600
           LEYALE G   SAGFY LH AA+ GD DL  TL +R YD+N +D DGYTPLMLAA+ GHG
Sbjct: 539 LEYALERGNHRSAGFYPLHCAARCGDLDLARTLANRGYDINFADTDGYTPLMLAARGGHG 598

Query: 601 SVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHTK 660
           S+C+ LIS GA C+I+N R+ETAL LAR+NG GN AE VILDELA TLVLDG  VKKHTK
Sbjct: 599 SMCEFLISCGAICNIKNERHETALVLARKNGFGNGAERVILDELARTLVLDGAPVKKHTK 658

Query: 661 CGKGSPHVKLLKM--------WGKSRKRNVVCRAAEVGPSDTFRWNRRRK 702
            GKG+PH KLLKM        WGKS KRNV+CR AE+GPS +F     +K
Sbjct: 659 RGKGTPHCKLLKMVDGIGVLRWGKSSKRNVICRGAELGPSTSFPVEPEKK 708

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547800|ref|XP_002514957.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223546008|gb|EEF47511.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  983 bits (2542), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/643 (74%), Positives = 545/643 (84%), Gaps = 9/643 (1%)

Query: 119 LFRGYATTAAVREDHLEILDLLIKAGACQEACEEALLETSYLGQARPAELLMATDLIRPQ 178
           LFRGYATTAAVRE HL++L++L+KAGA QEACEEALLE SYLGQAR AELLM +DLIRPQ
Sbjct: 2   LFRGYATTAAVREGHLDVLEVLMKAGASQEACEEALLEASYLGQARHAELLMGSDLIRPQ 61

Query: 179 VSVHALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQ 238
           V+VHALV+AC RGFVNVVDTLIKCGVDANAIDRVLL+SSKP+L+AN DCNAL  AVVSRQ
Sbjct: 62  VAVHALVTACCRGFVNVVDTLIKCGVDANAIDRVLLRSSKPSLYANVDCNALAAAVVSRQ 121

Query: 239 ISVVRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAIL 298
            SVVRLLLQ  V+MDIKV++GAWSWDMDTGEE RVGAGLAE Y ITWCAVEYFE+SGAIL
Sbjct: 122 TSVVRLLLQVNVRMDIKVKLGAWSWDMDTGEEFRVGAGLAEAYLITWCAVEYFEASGAIL 181

Query: 299 HMLFQHISPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAA 358
            ML +H SPNILH GR+LIHHAILCNNARA E++LNC  DKEFPV+T SK + RP+HLAA
Sbjct: 182 RMLLRHFSPNILHFGRSLIHHAILCNNARAAEVILNCGADKEFPVKTTSKNDWRPVHLAA 241

Query: 359 RLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQC 418
           RLGS K+L +LI AGCN+NSRT +GETA M+CA+YK + CLK LAS GAD GL+N AGQ 
Sbjct: 242 RLGSVKVLEQLIVAGCNLNSRTDSGETALMVCAKYKQKNCLKVLASAGADFGLVNSAGQS 301

Query: 419 ANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADV 478
            +SIA S+RW LGFQ+AVV  I++G  I+SSNAS FSPLMFV QAND++ALKKLIE + +
Sbjct: 302 VSSIAMSTRWALGFQEAVVTVIQAGKNIKSSNASVFSPLMFVIQANDIEALKKLIERSYI 361

Query: 479 DLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQ 538
           DLDEQD DGFSAAMIAAA GHVEAFRLL++AGANIKL+NKYGETAI L+ELN + EV+E+
Sbjct: 362 DLDEQDDDGFSAAMIAAAGGHVEAFRLLVYAGANIKLENKYGETAIRLSELNHHDEVIEK 421

Query: 539 VILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSG 598
           V+LEYALEEG   SAG +ALHRAA+RGD +LV  LV R YD+NASD DGYTPLMLAA  G
Sbjct: 422 VMLEYALEEGYDYSAGIHALHRAARRGDLNLVSMLVKRGYDINASDDDGYTPLMLAAMGG 481

Query: 599 HGSVCQLLISSGAKCDIENARNETALALARENG-NGNEAENVILDELALTLVLDGTYVKK 657
              +CQLLIS GA CDIENAR ETAL +AR+NG  G+E E+VILDELA  LVL G  VKK
Sbjct: 482 RSRICQLLISCGASCDIENARRETALLIARKNGYYGDETESVILDELARQLVLGGARVKK 541

Query: 658 HTKCGKGSPHVKLLKM--------WGKSRKRNVVCRAAEVGPSDTFRWNRRRKFDVEEPG 709
           HT+ GKG+PH K L+M        WGKS KRNV+CR AEVGPS  FRWNRRRKFDVE+PG
Sbjct: 542 HTRGGKGAPHYKELRMVGTAGVLRWGKSSKRNVICRGAEVGPSSKFRWNRRRKFDVEDPG 601

Query: 710 MFHVVTTQNKEVHFVCQGGLEMADLWVRGIRLVTGQAIFGKMQ 752
           MFHV+TT+NKEVHFVC+GG EMA+LWVRGI+LVT +AIFGK +
Sbjct: 602 MFHVITTKNKEVHFVCEGGTEMAELWVRGIKLVTREAIFGKKK 644

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463057|ref|XP_003601810.1| Ankyrin repeat domain-containing protein [Medicago truncatula] gi|355490858|gb|AES72061.1| Ankyrin repeat domain-containing protein [Medicago truncatula]

 Score =  980 bits (2533), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/751 (64%), Positives = 590/751 (78%), Gaps = 16/751 (2%)

Query: 15  KQQVFPVDYEAEVSQRLVDAAHVNDVKRANECIGDPFVDVNFVGTVSLRAKKTELVLHDE 74
           ++QVFP+DYE E+SQRLVDAAH  D   A EC+ +P VDVNF+GTV L++K  E+VL DE
Sbjct: 12  RKQVFPIDYETEMSQRLVDAAHRGDTDSAIECLANPLVDVNFIGTVMLKSKTMEIVLQDE 71

Query: 75  AAHEVRVVYEEFKTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTAAVREDHL 134
           + H V  VYEEFK EVTALFLAAH+GNLTL+RKLL++GANVN +LFRGYATTAAVRE HL
Sbjct: 72  SPHRVNSVYEEFKIEVTALFLAAHSGNLTLIRKLLNVGANVNVRLFRGYATTAAVREGHL 131

Query: 135 EILDLLIKAGACQEACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVN 194
           +IL++LI  GA Q ACEEALLE SY+G AR AELLM +++IRP V++HALVSAC RGF  
Sbjct: 132 KILEVLINGGASQLACEEALLEASYVGHARFAELLMQSNMIRPHVAIHALVSACCRGFTE 191

Query: 195 VVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDI 254
           VVD LIK GVD NA+DR LLQSSKP LHAN DCNAL  AVVSRQI+VVRLLLQ GV++D 
Sbjct: 192 VVDVLIKHGVDVNAMDRTLLQSSKPFLHANVDCNALFAAVVSRQINVVRLLLQVGVRLDT 251

Query: 255 KVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGR 314
           KV++GAWSW+ DTGEE RVG GLAE Y ITWCAVEYFES+G IL+ML  H+SPN  H GR
Sbjct: 252 KVKLGAWSWERDTGEEFRVGVGLAEPYPITWCAVEYFESTGTILNMLLYHLSPNSFHIGR 311

Query: 315 TLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGC 374
           TL+HH I+CNN RA+ +LL+  VD E  VQT  +T + PIH+AARLGS  ILR LI+  C
Sbjct: 312 TLLHHTIMCNNERALNILLSNGVDTELVVQTTEETNVHPIHMAARLGSCNILRCLINGKC 371

Query: 375 NINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQ 434
           N++S+T  G+TA MIC R K+E+CL+ L S GADLG++N +G  A SI+ S++WT  +Q+
Sbjct: 372 NLDSQTKFGDTALMICTRNKNEKCLRVLVSSGADLGIVNLSGHYATSISSSNQWTQVYQK 431

Query: 435 AVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIA 494
           A++D IRSG  ++SSNASRFS L+FVT+AND++ALKKLIE+ +++LDEQ+ +G SA MIA
Sbjct: 432 AILDIIRSGTGVKSSNASRFSALLFVTRANDIEALKKLIEYRNINLDEQNGNGLSAVMIA 491

Query: 495 AAAGHVEAFRLLLHAGAN-IKLQNKYGETAITLAELNRNGEVLE---QVILEYALEEGQK 550
           AA G+VEAF++LLHAGA+ I L+N+YG TA+ L +LN+NGE  E   +V+ EYAL++G  
Sbjct: 492 AAEGNVEAFKVLLHAGADVINLKNRYGLTALNLIDLNQNGENKENFHKVMFEYALKKGCL 551

Query: 551 GSAGFY---ALHRAAKRGDFDLVHTLVSR-CYDVNASDADGYTPLMLAAKSGHGSVCQLL 606
             +       LHRAA  GD  +V  L+    YDVN  D +GYTPLMLAA+  +G +C++L
Sbjct: 552 NISTLTEPNPLHRAACYGDISIVEKLLKEGYYDVNGFDGNGYTPLMLAARESNGEMCEIL 611

Query: 607 ISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHTKCGKGSP 666
           IS GAKCD++N RNETAL LAREN  GN+AE VILDELA  +VL G  VKKHTKCGKG P
Sbjct: 612 ISYGAKCDVKNERNETALLLARENNKGNDAERVILDELARRVVLRGACVKKHTKCGKGLP 671

Query: 667 HVKLLKM--------WGKSRKRNVVCRAAEVGPSDTFRWNRRRKFDVEEPGMFHVVTTQN 718
           H K L M        WGKS KRNVVC+ AEVGPS+ FRWNRRRKFDV+E GMF+VVT +N
Sbjct: 672 HKKQLVMIGAAGILRWGKSNKRNVVCKEAEVGPSERFRWNRRRKFDVDELGMFYVVTAKN 731

Query: 719 KEVHFVCQGGLEMADLWVRGIRLVTGQAIFG 749
           KEVHFVC+GG+EMA+LWVRGIRLVT +AIFG
Sbjct: 732 KEVHFVCEGGVEMAELWVRGIRLVTREAIFG 762

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441380|ref|XP_004138460.1| PREDICTED: ankyrin-2-like [Cucumis sativus] gi|449495266|ref|XP_004159782.1| PREDICTED: ankyrin-2-like [Cucumis sativus]

 Score =  962 bits (2488), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/742 (63%), Positives = 581/742 (78%), Gaps = 10/742 (1%)

Query: 16  QQVFPVDYEAEVSQRLVDAAHVNDVKRANECIGDPFVDVNFVGTVSLRAKKTELVL-HDE 74
           +QVFP+++EAEVSQRL++A+H  D+K A + I +P VDVNF+G V L+ +KTE+V   DE
Sbjct: 7   KQVFPLNFEAEVSQRLIEASHSGDLKSALDYIANPCVDVNFIGAVHLKNRKTEVVFTDDE 66

Query: 75  AAHEVRVVYEEFKTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTAAVREDHL 134
           +A +VRV Y+EFKT+VTALF+A H GN+ LV+KLLS+GA+VNQKLFRG+ATTAAVRE H+
Sbjct: 67  SASQVRVEYDEFKTDVTALFVAVHTGNVALVKKLLSVGADVNQKLFRGFATTAAVRESHI 126

Query: 135 EILDLLIKAGACQEACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVN 194
           EIL++L+KAGA Q ACEEALLE+S  G AR AELLM +DLIRP V+VHALV+AC RGF++
Sbjct: 127 EILEILLKAGASQPACEEALLESSCHGHARSAELLMGSDLIRPHVAVHALVTACCRGFID 186

Query: 195 VVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDI 254
           VVDTL+KCGVDANA DRVLLQSSKP+LH N +C ALV AVVSR+IS+VR LLQAG + DI
Sbjct: 187 VVDTLLKCGVDANATDRVLLQSSKPSLHTNVNCTALVAAVVSRKISIVRFLLQAGAQTDI 246

Query: 255 KVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGR 314
            VR+GAWSWDMDTGEE RVGAGLA+ Y +TWCAVEYFE SGAILHML +H+SPN LH GR
Sbjct: 247 SVRLGAWSWDMDTGEEFRVGAGLADPYSVTWCAVEYFERSGAILHMLLRHMSPNALHYGR 306

Query: 315 TLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGC 374
           TLIHHAILC NA AV +L  C  D E PV+T  KTE RP+H+AARLG+A +L+ L+ AGC
Sbjct: 307 TLIHHAILCGNAGAVAVLSKCGADVECPVKTTGKTEFRPLHMAARLGNAAVLQCLVDAGC 366

Query: 375 NINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQ 434
           ++NSRT A +TA MICA++K+EECLK L + GAD GL+N AGQ  +SIA S++W  GFQQ
Sbjct: 367 DLNSRTDAEDTALMICAKHKYEECLKVLGAAGADFGLVNVAGQSVSSIAGSNQWIFGFQQ 426

Query: 435 AVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIA 494
            V+D I++G    SSN S F PL+   Q  D +ALK LI W   DLD QD  GF+A M A
Sbjct: 427 TVIDLIKTGKRPISSNMSIFCPLILAAQTGDTEALKALIGWGGCDLDYQDDQGFTAVMFA 486

Query: 495 AAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAG 554
           A+ GH EAFRLL++AGA+++L NK GETAITL +L+ N +  E+V+LE+AL+ G + +AG
Sbjct: 487 ASNGHTEAFRLLVYAGADVRLSNKSGETAITLYQLHPNHDQFEKVMLEFALDMGNRNAAG 546

Query: 555 FYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCD 614
           FYALH AA+RGD D V  L ++ YDVNA+D+DGYTPLMLAA+ GHGS+C+LLIS GA+ D
Sbjct: 547 FYALHCAARRGDLDAVKFLTNKGYDVNATDSDGYTPLMLAARGGHGSMCKLLISLGARAD 606

Query: 615 IENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHTKCGKGSPHVKLLKM- 673
             + R ETAL+LAR+N   +EAE VILDELA  LVL G  VKKHT+ GKGSPH K L+M 
Sbjct: 607 TRSTRGETALSLARKN-EKSEAEEVILDELARGLVLHGARVKKHTRGGKGSPHGKELRMI 665

Query: 674 -------WGKSRKRNVVCRAAEVGPSDTFRWNRRRKFDVEEPGMFHVVTTQNKEVHFVCQ 726
                  WGKS +RNVVCR  EVG S  F  NR +K D  E G+F V+T +NKEVHFVC+
Sbjct: 666 GSMGMLRWGKSSRRNVVCREVEVGSSARFVKNRVKKGDGGEAGLFRVMTVKNKEVHFVCE 725

Query: 727 GGLEMADLWVRGIRLVTGQAIF 748
           GG EMA+LWVRGIRLVT +A+ 
Sbjct: 726 GGCEMAELWVRGIRLVTREALI 747

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357503833|ref|XP_003622205.1| Ankyrin repeat domain-containing protein [Medicago truncatula] gi|355497220|gb|AES78423.1| Ankyrin repeat domain-containing protein [Medicago truncatula]

 Score =  931 bits (2406), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/737 (62%), Positives = 564/737 (76%), Gaps = 10/737 (1%)

Query: 16  QQVFPVDYEAEVSQRLVDAAHVNDVKRANECIGDPFVDVNFVGTVSLRAKKTELVLHDEA 75
           +Q+FP++YE EVSQRL++A+H  D+  A  CI DP VDVNF G VSL+++ TELV++ E+
Sbjct: 7   KQIFPLNYETEVSQRLLEASHSGDLSLAFHCISDPSVDVNFTGAVSLKSRNTELVVNCES 66

Query: 76  AHEVRVVYEEFKTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTAAVREDHLE 135
           +  V V ++EF T+VT LFLA HAGN +LVRKLLS+GA+VNQKLFRG+ATTAAVRE HL+
Sbjct: 67  SSRVCVEFQEFVTDVTPLFLAVHAGNASLVRKLLSVGADVNQKLFRGFATTAAVREGHLD 126

Query: 136 ILDLLIKAGACQEACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNV 195
           IL+ LI AGA Q ACEEALLE SY GQA   ELLM++D IRP ++VHALV+AC RGFV+V
Sbjct: 127 ILETLINAGASQLACEEALLEASYHGQAGCGELLMSSDFIRPHIAVHALVAACCRGFVDV 186

Query: 196 VDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIK 255
           V+TLIKCGVDA+A DRVLLQS KP+LH N DCNALV AVV RQ+ VV LLLQ     D +
Sbjct: 187 VETLIKCGVDASATDRVLLQSLKPSLHTNVDCNALVAAVVHRQVHVVSLLLQNVATTDFE 246

Query: 256 VRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRT 315
           VR+GAWSWD  TGEELRVGAGL E Y ITWCAVEYFE SGAIL +L QH+S N  H GRT
Sbjct: 247 VRLGAWSWDNATGEELRVGAGLGEPYGITWCAVEYFEKSGAILRLLLQHVSNNC-HCGRT 305

Query: 316 LIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCN 375
           ++HHAILC N  AV +LL C  + E  V+T SKTE  P+H+A+RLG   I + LI  GC+
Sbjct: 306 ILHHAILCGNVEAVRILLECGANVESLVKTTSKTEFLPVHMASRLGLPAITQCLIDFGCD 365

Query: 376 INSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQA 435
           +NSRT  G+TA MICA+YK EECLK L   GAD  L+N AGQ A+SIA+S +W+ GFQQA
Sbjct: 366 LNSRTDCGDTALMICAKYKQEECLKVLTRAGADFCLVNSAGQSASSIAESYKWSHGFQQA 425

Query: 436 VVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAA 495
           VVD IR+G I +SSN S FSPL+FV++A D +ALK +IE  + DLD QD  GFSAAM  A
Sbjct: 426 VVDVIRNGKIPKSSNTSTFSPLIFVSKAGDAEALKTVIESGEFDLDYQDDSGFSAAMHTA 485

Query: 496 AAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGF 555
             GHVE+FRLL++AGA++KL NK GETAITL+ELN+N  + E+V+LE+ LE+G + + GF
Sbjct: 486 VKGHVESFRLLVYAGADVKLCNKSGETAITLSELNQNCNLFEKVMLEFTLEKGNQNTGGF 545

Query: 556 YALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDI 615
           YALH AA+RGD D V  L S+ +DVN  D + YTPLMLAA+ GH S+C+LLIS GA C+ 
Sbjct: 546 YALHCAARRGDLDAVTLLTSKGFDVNVPDGEDYTPLMLAAREGHASLCKLLISYGAHCNA 605

Query: 616 ENARNETALALARENGNG-NEAENVILDELALTLVLDGTYVKKHTKCGKGSPHVKLLKM- 673
           +NAR ETAL LAR+   G N+AE VILDELA  LVL G YV+KHTKCGKG+PHVK L+M 
Sbjct: 606 KNARGETALLLARKFAGGKNDAEGVILDELARKLVLGGAYVQKHTKCGKGNPHVKQLRML 665

Query: 674 -------WGKSRKRNVVCRAAEVGPSDTFRWNRRRKFDVEEPGMFHVVTTQNKEVHFVCQ 726
                  WG+S +RNV+CR A +GPS T R NR    D EEPGMF V+T +N+EVHFVC+
Sbjct: 666 RSSGVLCWGQSSRRNVLCREALLGPSSTLRRNRHNTGDAEEPGMFRVLTNKNREVHFVCE 725

Query: 727 GGLEMADLWVRGIRLVT 743
           GG E A LWVRGI+LVT
Sbjct: 726 GGSEAAKLWVRGIKLVT 742

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	758
TAIR|locus:2145613	751	AT5G14230 [Arabidopsis thalian	0.965	0.974	0.544	1.3e-212
UNIPROTKB|F1NJR5	1895	Gga.55799 "Uncharacterized pro	0.569	0.227	0.236	1.3e-22
UNIPROTKB|F1MY81	1136	ANK1 "Uncharacterized protein"	0.656	0.438	0.222	1.3e-20
UNIPROTKB|F1PRD8	1857	ANK1 "Uncharacterized protein"	0.649	0.264	0.223	3.4e-20
UNIPROTKB|F1PRC8	1916	ANK1 "Uncharacterized protein"	0.649	0.256	0.223	5.9e-20
UNIPROTKB|F1SE30	1885	ANK1 "Uncharacterized protein"	0.656	0.264	0.222	1.2e-19
UNIPROTKB|F1PJ90	1782	ANK3 "Uncharacterized protein"	0.676	0.287	0.223	2.5e-19
MGI|MGI:88026	1961	Ank3 "ankyrin 3, epithelial" [	0.676	0.261	0.222	3.2e-19
UNIPROTKB|K7GLA8	1847	ANK3 "Uncharacterized protein"	0.676	0.277	0.222	3.5e-19
MGI|MGI:88024	1862	Ank1 "ankyrin 1, erythroid" [M	0.649	0.264	0.222	6.6e-19

TAIR|locus:2145613 AT5G14230 [Arabidopsis thaliana (taxid:3702)]

 Score = 2055 (728.5 bits), Expect = 1.3e-212, P = 1.3e-212
 Identities = 407/747 (54%), Positives = 531/747 (71%)

Query:    16 QQVFPVDYEAEVSQRLVDAAHVNDVKRANECIGDPFVDVNFVGTVSLRAKKTELVLHDEA 75
             +QV P+DYEAEVSQRL++A    D K A++C+ DP VDVNFVG VSL+ +++E+VL DE+
Sbjct:     7 RQVVPMDYEAEVSQRLLEAILDGDFKTASDCVSDPLVDVNFVGAVSLKTRRSEVVLRDES 66

Query:    76 AHEVRVVYEEFKTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTAAVREDHLE 135
               EVRV YEEFKT+VTALFLA + GN  LV++LL++GA+VNQKLFRG+ATT AVRE H +
Sbjct:    67 PSEVRVEYEEFKTDVTALFLAVNFGNAALVKELLNIGADVNQKLFRGFATTVAVREGHFD 126

Query:   136 ILDLLIKXXXXXXXXXXXXXXTSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNV 195
             + ++L+K               S  G++R  ELLM TDLIRPQV+VHAL +AC RGFV+V
Sbjct:   127 VFEILLKAGASQPACEEALVGASCHGRSRFVELLMGTDLIRPQVAVHALATACCRGFVDV 186

Query:   196 VDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIK 255
             V TL+KCGVDAN+ DR+LLQSSKP+L+ N DC ALV A+V+RQ+S VR+LLQAGVK DI 
Sbjct:   187 VGTLLKCGVDANSTDRLLLQSSKPSLYTNVDCTALVAAIVNRQVSAVRVLLQAGVKTDIM 246

Query:   256 VRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRT 315
             VR+GAWSWD +TGEE RVGAG+AE Y +TWCAVEYFE+SG IL +L +  SPN LHNGRT
Sbjct:   247 VRLGAWSWDTNTGEEFRVGAGVAEPYPLTWCAVEYFETSGDILRLLLKLQSPNALHNGRT 306

Query:   316 LIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCN 375
             L+HHA+LC N  AV +LL+C  D E P++T    ELRPIH+AAR GS +I+++L+  GC+
Sbjct:   307 LLHHAVLCGNKAAVSVLLDCGADPEAPIKTSRGIELRPIHIAARDGSVEIIQQLVGFGCD 366

Query:   376 INSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQA 435
             INS+   G TA +I  ++KH EC+K LA +GAD GL+N  G  A SIA+S++W+LG ++ 
Sbjct:   367 INSKNDVGNTALLISIKHKHPECVKVLALDGADFGLVNKFGHSAVSIAESNKWSLGLERV 426

Query:   436 VVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDXXXXXXXXXXX 495
             +++ IR G +  SSNAS FSPL++  QA D +ALK L++  D+ LD QD           
Sbjct:   427 ILELIRFGVVPHSSNASVFSPLLYGAQAGDAEALKALVKAQDIYLDYQDEEGFSAAMLAA 486

Query:   496 XXXXXXXFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAG- 554
                    FR+L++AGA++KL N  G+T ++L+E N N +V+E+V+LE+ALE+  +  AG 
Sbjct:   487 MNGHVEAFRVLVYAGADVKLYNNSGDTVVSLSEQNGNRDVIEKVMLEFALEKDSRNMAGG 546

Query:   555 FYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCD 614
             FYALH AA+RGD   V  L  + Y ++  D DGYTPLMLAA+ GHG +C+ LIS GA C+
Sbjct:   547 FYALHCAARRGDVKAVKLLSGKGYSLDIPDGDGYTPLMLAAREGHGHMCEYLISCGANCN 606

Query:   615 IENARNETALALARXXXXXXXXXXVILDELALTLVLDGTYVKKHTKCGKGSPHVKLLKM- 673
              +N R E  L LA           VI +EL+   V++G+ V KHTK GKG  H K L+M 
Sbjct:   607 AKNGRGEKLLDLA-----TGDAEKVIRNELSRRFVIEGSSVMKHTKGGKGKKHGKGLRML 661

Query:   674 -------WGKSRKRNVVCRAAEVGPSDTFRWNRRRKFD-VEEPGMFHVVTTQNKEVHFVC 725
                    WGKSRKR VVC+  E+G S  FR NR+ K D  EE G+F VVTT+NKEVHFVC
Sbjct:   662 ESSGVLSWGKSRKRTVVCKEVEIGMSQRFRKNRKGKGDGAEEEGIFRVVTTENKEVHFVC 721

Query:   726 QGGLEMADLWVRGIRLVTGQAIFGKMQ 752
             +GGL  A++WVRGIRLVT + I G+ Q
Sbjct:   722 EGGLVCAEMWVRGIRLVTRETICGRTQ 748

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1NJR5 Gga.55799 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 202 (76.2 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
 Identities = 111/469 (23%), Positives = 197/469 (42%)

Query:    24 EAEVSQRLVDAAHVNDVKRANECIGDPFVDVNF-----VGTVSLRAKKTELVLHDEAAHE 78
             +A+ +   + AA   ++ RA + + +  VD+N      +  + L +K+    +  E  H+
Sbjct:    42 KADAATSFLRAARSGNLDRALDHLRNG-VDINTCNQNGLNALHLASKEGHTKMVVELLHK 100

Query:    79 VRVVYEEFKTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATT-AAVREDHLEIL 137
               V+    K   TAL +AA AG   +VR+L++ GANVN +  +G+     A +E+HLE++
Sbjct:   101 EIVLETTTKKGNTALHIAALAGQQDVVRELVNYGANVNAQSQKGFTPLYMAAQENHLEVV 160

Query:   138 DLLIKXXXXXXXXXXXXXXTSYLGQARPAELLMATDLI----RPQVSVHALVSACFRGFV 193
               L++                 +   +  E ++A  LI    + +V + AL  A      
Sbjct:   161 KFLLENGANQNVATEDGFTPLAVALQQGHENVVA-HLINYGTKGKVRLPALHIAARNDDT 219

Query:   194 NVVDTLIKCGVDANAIDRVLLQSSKPALH--ANFDCNALVGAVVSRQISVVRLLLQAGVK 251
                  L++   D NA D VL ++    LH  A+++  ++   +++R  SV     Q G+ 
Sbjct:   220 RTAAVLLQN--DPNA-D-VLSKTGFTPLHIAAHYENLSVAQLLLNRGASV-NFTPQNGIT 274

Query:   252 -MDIKVRMGAWSWD---MDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISP 307
              + I  R G        +D G ++       ++     CA         I  +L  H +P
Sbjct:   275 PLHIASRRGNIIMVRLLLDRGAQIETRT--KDELTPLHCAAR--NGHVRIAEILLDHGAP 330

Query:   308 --NILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKI 365
                   NG + IH A   ++   V LLL  + +    +   +   L P+H+AA  G  ++
Sbjct:   331 IQAKTKNGLSPIHMAAQGDHLDCVRLLLQYSAE----IDDITLDHLTPLHVAAHCGHHRV 386

Query:   366 LRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKS 425
              + L+  G   NSR   G T   I  +  H   ++ L   GA +  +  +G     +A  
Sbjct:   387 AKLLVEKGAKPNSRALNGFTPLHIACKKNHIRVMELLLKTGASIDAVTESGLTPLHVAAF 446

Query:   426 SRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIE 474
                 +G    V   ++ G     SN    +PL    +A  +D  K LI+
Sbjct:   447 ----MGHLPIVKTLLQRGASPNVSNVKVETPLHMAARAGHMDVAKYLIQ 491

GO:0007165 "signal transduction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0014731 "spectrin-associated cytoskeleton" evidence=IEA

GO:0015672 "monovalent inorganic cation transport" evidence=IEA

GO:0030507 "spectrin binding" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0048821 "erythrocyte development" evidence=IEA

GO:0051117 "ATPase binding" evidence=IEA

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

UNIPROTKB|F1MY81 ANK1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 226 (84.6 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
 Identities = 120/539 (22%), Positives = 219/539 (40%)

Query:    87 KTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATT-AAVREDHLEILDLLIKXXX 145
             K E+T L  AA  G+L +   LL  GA +  K   G +    A + DHL+ + LL++   
Sbjct:   269 KDELTPLHCAARNGHLRISEILLDHGAPIQAKTKNGLSPIHMAAQGDHLDCVRLLLQYNA 328

Query:   146 XXXXXXXXXXX----TSYLGQARPAELLM---ATDLIRPQVSVHALVSACFRGFVNVVDT 198
                             ++ G  R A++L+   A    R       L  AC +  + V++ 
Sbjct:   329 EIDDITLDHLTPLHVAAHCGHHRVAKVLLDKGAKPNSRALNGFTPLHIACKKNHIRVMEL 388

Query:   199 LIKCGVDANAIDRVLLQSSKPALH-ANFDCNA-LVGAVVSRQISVVRLLLQAGVKMDIKV 256
             L+K G   +A+     +S    LH A+F  +  +V +++ R+ S       + VK++  +
Sbjct:   389 LLKMGASIDAVT----ESGLTPLHVASFMGHLPIVKSLLQREASPN----VSNVKVETPL 440

Query:   257 RMGAWSWDMDTGEEL-----RVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILH 311
              M A +   +  + L     +V A   +D     CA     ++   L +L  + +PN+  
Sbjct:   441 HMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKL-LLENNANPNLAT 499

Query:   312 N-GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLI 370
               G T +H  I       VE  L   ++KE      +K    P+H+AA+ G  ++   L+
Sbjct:   500 TAGHTPLH--IAAREGH-VETAL-ALLEKEASQTCMTKKGFTPLHVAAKYGKVRMAELLL 555

Query:   371 SAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTL 430
                 + N+   +G T   +   + H + ++ L   G         G     IA       
Sbjct:   556 EHDAHPNAAGKSGLTPLHVAVHHNHLDVVRLLLPRGGSPHSPALNGYTPLHIAAKQN--- 612

Query:   431 GFQQAVVDSI-RSGNIIQSSNASRFSPLMFVTQANDVDALKKLI-EWADVDLDEQDXXXX 488
               Q  V  S+ + G    + +    +PL    Q    + +  L+ + A+ +L  +     
Sbjct:   613 --QLEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTP 670

Query:   489 XXXXXXXXXXXXXXFRLLLHAGANIKLQNKYGETAITLAELNRNGEV-LEQVILEYALEE 547
                             L+ H G  +    + G T + +A  +  G + L + +L++  + 
Sbjct:   671 LHLVAQEGHIPVADV-LIKH-GVTVDATTRMGYTPLHVA--SHYGNIKLVKFLLQHKADV 726

Query:   548 GQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLL 606
               K   G+  LH+AA++G  D+V  L+      N   ++G TPL +A + G+ SV  +L
Sbjct:   727 NAKTKLGYSPLHQAAQQGHTDIVTLLLKHGASPNEVSSNGTTPLAIAKRLGYISVTDVL 785

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

GO:0051117 "ATPase binding" evidence=IEA

GO:0048821 "erythrocyte development" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0030507 "spectrin binding" evidence=IEA

GO:0015672 "monovalent inorganic cation transport" evidence=IEA

GO:0014731 "spectrin-associated cytoskeleton" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|F1PRD8 ANK1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 225 (84.3 bits), Expect = 3.4e-20, Sum P(2) = 3.4e-20
 Identities = 122/545 (22%), Positives = 220/545 (40%)

Query:    87 KTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATT-AAVREDHLEILDLLIKXXX 145
             K E+T L  AA  G++ +   LL  GA +  K   G +    A + DHL+ + LL++   
Sbjct:   264 KDELTPLHCAARNGHVRISEILLDHGAPIQAKTKNGLSPIHMAAQGDHLDCVRLLLQYNA 323

Query:   146 XXXXXXXXXXX----TSYLGQARPAELLM---ATDLIRPQVSVHALVSACFRGFVNVVDT 198
                             ++ G  R A++L+   A    R       L  AC +  + V++ 
Sbjct:   324 EIDDITLDHLTPLHVAAHCGHHRVAKVLLDKGAKPNSRALNGFTPLHIACKKNHIRVMEL 383

Query:   199 LIKCGVDANAIDRVLLQSSKPALH-ANFDCNALVGAVVSRQISVVRLLLQAG-------V 250
             L+K G   +A+     +S    LH A+F     +G      + +V+ LLQ G       V
Sbjct:   384 LLKTGASIDAVT----ESGLTPLHVASF-----MG-----HLPIVKNLLQRGASPNVSNV 429

Query:   251 KMDIKVRMGAWSWDMDTGEEL-----RVGAGLAEDYCITWCAVEYFESSGAILHMLFQHI 305
             K++  + M A +   +  + L     +V A   +D     CA     ++   L +L  + 
Sbjct:   430 KVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKL-LLENNA 488

Query:   306 SPNILHN-GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAK 364
             +PN+    G T +H  I     + VE  L   ++KE      +K    P+H+AA+ G  +
Sbjct:   489 NPNLATTAGHTPLH--IAAREGQ-VETAL-ALLEKEASQACMTKKGFTPLHVAAKYGKVR 544

Query:   365 ILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAK 424
             +   L+    + N+    G T   +   + H + ++ L   G       + G     IA 
Sbjct:   545 VAELLLGRDAHPNAAGKNGLTPLHVAVHHNHLDIVRLLLPRGGSPHSPAWNGYTPLHIAA 604

Query:   425 SSRWTLGFQQAVVDSI-RSGNIIQSSNASRFSPLMFVTQANDVDALKKLI-EWADVDLDE 482
                     Q  V  S+ + G    + +    +PL    Q    + +  L+ + A+ +L  
Sbjct:   605 KQN-----QMEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGN 659

Query:   483 QDXXXXXXXXXXXXXXXXXXFRLLLHAGANIKLQNKYGETAITLAELNRNGEV-LEQVIL 541
             +                     L+ H G  +    + G T + +A  +  G + L + +L
Sbjct:   660 KSGLTPLHLVAQEGHVPVADV-LIKH-GVTVDATTRMGYTPLHVA--SHYGNIKLVKFLL 715

Query:   542 EYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGS 601
             ++  +   K   G+  LH+AA++G  D+V  L+      N   ++G TPL +A + G+ S
Sbjct:   716 QHQADVNAKTKQGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSNGTTPLAIAKRLGYIS 775

Query:   602 VCQLL 606
             V  +L
Sbjct:   776 VTDVL 780

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1PRC8 ANK1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 225 (84.3 bits), Expect = 5.9e-20, Sum P(2) = 5.9e-20
 Identities = 122/545 (22%), Positives = 220/545 (40%)

Query:    87 KTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATT-AAVREDHLEILDLLIKXXX 145
             K E+T L  AA  G++ +   LL  GA +  K   G +    A + DHL+ + LL++   
Sbjct:   274 KDELTPLHCAARNGHVRISEILLDHGAPIQAKTKNGLSPIHMAAQGDHLDCVRLLLQYNA 333

Query:   146 XXXXXXXXXXX----TSYLGQARPAELLM---ATDLIRPQVSVHALVSACFRGFVNVVDT 198
                             ++ G  R A++L+   A    R       L  AC +  + V++ 
Sbjct:   334 EIDDITLDHLTPLHVAAHCGHHRVAKVLLDKGAKPNSRALNGFTPLHIACKKNHIRVMEL 393

Query:   199 LIKCGVDANAIDRVLLQSSKPALH-ANFDCNALVGAVVSRQISVVRLLLQAG-------V 250
             L+K G   +A+     +S    LH A+F     +G      + +V+ LLQ G       V
Sbjct:   394 LLKTGASIDAVT----ESGLTPLHVASF-----MG-----HLPIVKNLLQRGASPNVSNV 439

Query:   251 KMDIKVRMGAWSWDMDTGEEL-----RVGAGLAEDYCITWCAVEYFESSGAILHMLFQHI 305
             K++  + M A +   +  + L     +V A   +D     CA     ++   L +L  + 
Sbjct:   440 KVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKL-LLENNA 498

Query:   306 SPNILHN-GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAK 364
             +PN+    G T +H  I     + VE  L   ++KE      +K    P+H+AA+ G  +
Sbjct:   499 NPNLATTAGHTPLH--IAAREGQ-VETAL-ALLEKEASQACMTKKGFTPLHVAAKYGKVR 554

Query:   365 ILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAK 424
             +   L+    + N+    G T   +   + H + ++ L   G       + G     IA 
Sbjct:   555 VAELLLGRDAHPNAAGKNGLTPLHVAVHHNHLDIVRLLLPRGGSPHSPAWNGYTPLHIAA 614

Query:   425 SSRWTLGFQQAVVDSI-RSGNIIQSSNASRFSPLMFVTQANDVDALKKLI-EWADVDLDE 482
                     Q  V  S+ + G    + +    +PL    Q    + +  L+ + A+ +L  
Sbjct:   615 KQN-----QMEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGN 669

Query:   483 QDXXXXXXXXXXXXXXXXXXFRLLLHAGANIKLQNKYGETAITLAELNRNGEV-LEQVIL 541
             +                     L+ H G  +    + G T + +A  +  G + L + +L
Sbjct:   670 KSGLTPLHLVAQEGHVPVADV-LIKH-GVTVDATTRMGYTPLHVA--SHYGNIKLVKFLL 725

Query:   542 EYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGS 601
             ++  +   K   G+  LH+AA++G  D+V  L+      N   ++G TPL +A + G+ S
Sbjct:   726 QHQADVNAKTKQGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSNGTTPLAIAKRLGYIS 785

Query:   602 VCQLL 606
             V  +L
Sbjct:   786 VTDVL 790

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IMP

GO:0005622 "intracellular" evidence=IMP

GO:0072661 "protein targeting to plasma membrane" evidence=IMP

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1SE30 ANK1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 221 (82.9 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
 Identities = 120/539 (22%), Positives = 216/539 (40%)

Query:    87 KTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATT-AAVREDHLEILDLLIKXXX 145
             K E+T L  AA  G+L +   LL  GA +  K   G +    A + DHL+ + LL++   
Sbjct:   303 KDELTPLHCAARNGHLRISEILLDHGAPIQAKTKNGLSPIHMAAQGDHLDCVRLLLQYNA 362

Query:   146 XXXXXXXXXXX----TSYLGQARPAELLM---ATDLIRPQVSVHALVSACFRGFVNVVDT 198
                             ++ G  R A++L+   A    R       L  AC +  + V++ 
Sbjct:   363 EIDDITLDHLTPLHVAAHCGHHRVAKVLLDKGAKPNSRALNGFTPLHIACKKNHIRVMEL 422

Query:   199 LIKCGVDANAIDRVLLQSSKPALH-ANFDCNA-LVGAVVSRQISVVRLLLQAGVKMDIKV 256
             L+K G   +A+     +S    LH A+F  +  +V  ++ R  S       + VK++  +
Sbjct:   423 LLKTGASIDAVT----ESGLTPLHVASFMGHLPIVKNLLQRDASPN----VSNVKVETPL 474

Query:   257 RMGAWSWDMDTGEEL-----RVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILH 311
              M A +   +  + L     +V A   +D     CA     ++   L +L  + +PN+  
Sbjct:   475 HMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKL-LLENNANPNLAT 533

Query:   312 N-GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLI 370
               G T +H  I       VE  L   ++K       +K    P+H+AA+ G  ++   L+
Sbjct:   534 TAGHTPLH--IAAREGH-VETAL-ALLEKGASQACMTKKGFTPLHVAAKYGKVRVAELLL 589

Query:   371 SAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTL 430
                 + N+    G T   +   + H + +K L   G       + G     IA       
Sbjct:   590 EHDAHPNAAGKNGLTPLHVAVHHNHLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQN--- 646

Query:   431 GFQQAVVDSI-RSGNIIQSSNASRFSPLMFVTQANDVDALKKLI-EWADVDLDEQDXXXX 488
               Q  V  S+ + G    + +    +PL    Q    + +  L+ + A+ +L  +     
Sbjct:   647 --QMEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTP 704

Query:   489 XXXXXXXXXXXXXXFRLLLHAGANIKLQNKYGETAITLAELNRNGEV-LEQVILEYALEE 547
                             L+ H G  +    + G T + +A  +  G + L + +L++  + 
Sbjct:   705 LHLVAQEGHVPVADV-LIKH-GVTVDATTRMGYTPLHVA--SHYGNIKLVKFLLQHQADV 760

Query:   548 GQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLL 606
               K   G+  LH+AA++G  D+V  L+      N   ++G TPL +A + G+ SV  +L
Sbjct:   761 NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSNGTTPLAIAKRLGYISVTDVL 819

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

GO:0051117 "ATPase binding" evidence=IEA

GO:0048821 "erythrocyte development" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0030507 "spectrin binding" evidence=IEA

GO:0015672 "monovalent inorganic cation transport" evidence=IEA

GO:0014731 "spectrin-associated cytoskeleton" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1PJ90 ANK3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 232 (86.7 bits), Expect = 2.5e-19, Sum P(2) = 2.5e-19
 Identities = 124/554 (22%), Positives = 218/554 (39%)

Query:    91 TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA-AVREDHLEILDLLIKXXXXXXX 149
             T L++AA   +L +V+ LL  GA+ +     G+   A A+++ H +++ LL++       
Sbjct:   142 TPLYMAAQENHLEVVKFLLDNGASQSLATEDGFTPLAVALQQGHDQVVSLLLENDTKGKV 201

Query:   150 XXXXXXXTSYLGQARPAELLMATDL---IRPQVSVHALVSACFRGFVNVVDTLIKCGVDA 206
                     +     + A LL+  D    I  +     L  A   G +NV   L+     A
Sbjct:   202 RLPALHIAARKDDTKAAALLLQNDNNADIESKSGFTPLHIAAHYGNINVATLLLN---RA 258

Query:   207 NAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVR-------MG 259
              A+D        P LH          A      ++V+LLL  G K+D K R        G
Sbjct:   259 AAVDFTARNDITP-LHV---------ASKRGNANMVKLLLDRGAKIDAKTRDGLTPLHCG 308

Query:   260 AWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILH---MLFQHISP--NILHNGR 314
             A S      E L   A           +  +  + G  L+   +L QH  P  ++ ++  
Sbjct:   309 ARSGHEQVVEMLLDRAAPILSKTKNGLSPLHMATQGDHLNCVQLLLQHNVPVDDVTNDYL 368

Query:   315 TLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGC 374
             T +H A  C + +  ++LL    DK+      +     P+H+A +    K++  L+  G 
Sbjct:   369 TALHVAAHCGHYKVAKVLL----DKKANPNAKALNGFTPLHIACKKNRIKVMELLLKHGA 424

Query:   375 NINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQ 434
             +I + T +G T   + A   H   +  L   GA     N  G+ A  +A  S    G  +
Sbjct:   425 SIQAVTESGLTPIHVAAFMGHVNIVSQLMHHGASPNTTNVRGETALHMAARS----GQAE 480

Query:   435 AVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEW-ADVDLDEQDXXXXXXXXX 493
              V   ++ G  +++      +PL    +    D +++L++  A  +              
Sbjct:   481 VVRYLVQDGAQVEAKAKDDQTPLHISARLGKADIVQQLLQQGASPNAATTSGYTPLHLSA 540

Query:   494 XXXXXXXXXFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSA 553
                      F  LL  GA++ +  K G T + +A      EV   ++L+ +      G +
Sbjct:   541 REGHEDVAAF--LLDHGASLSITTKKGFTPLHVAAKYGKLEVAN-LLLQKSASPDAAGKS 597

Query:   554 GFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKC 613
             G   LH AA   +  +   L+ +    +A+  +GYTPL +AAK     +   L+  GA  
Sbjct:   598 GLTPLHVAAHYDNQKVALLLLDQGASPHAAAKNGYTPLHIAAKKNQMDIATTLLEYGADA 657

Query:   614 DIENARNETALALA 627
             +    +   ++ LA
Sbjct:   658 NAVTRQGIASVHLA 671

GO:0007165 "signal transduction" evidence=IEA

MGI|MGI:88026 Ank3 "ankyrin 3, epithelial" [Mus musculus (taxid:10090)]

 Score = 232 (86.7 bits), Expect = 3.2e-19, Sum P(2) = 3.2e-19
 Identities = 123/554 (22%), Positives = 219/554 (39%)

Query:    91 TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA-AVREDHLEILDLLIKXXXXXXX 149
             T L++AA   +L +VR LL  GA+ +     G+   A A+++ H +++ LL++       
Sbjct:   125 TPLYMAAQENHLEVVRFLLDNGASQSLATEDGFTPLAVALQQGHDQVVSLLLENDTKGKV 184

Query:   150 XXXXXXXTSYLGQARPAELLMATDL---IRPQVSVHALVSACFRGFVNVVDTLIKCGVDA 206
                     +     + A LL+  D    +  +     L  A   G +NV   L+     A
Sbjct:   185 RLPALHIAARKDDTKAAALLLQNDTNADVESKSGFTPLHIAAHYGNINVATLLLN---RA 241

Query:   207 NAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWDMD 266
              A+D        P LH          A      ++V+LLL  G K+D K R G       
Sbjct:   242 AAVDFTARNDITP-LHV---------ASKRGNANMVKLLLDRGAKIDAKTRDGLTPLHCG 291

Query:   267 --TGEELRVGAGLAEDYCI-----TWCAVEYFESSGAILH---MLFQHISP--NILHNGR 314
               +G E  V   L     I        +  +  + G  L+   +L QH  P  ++ ++  
Sbjct:   292 ARSGHEQVVEMLLDRSAPILSKTKNGLSPLHMATQGDHLNCVQLLLQHNVPVDDVTNDYL 351

Query:   315 TLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGC 374
             T +H A  C + +  ++LL    DK+      +     P+H+A +    +++  L+  G 
Sbjct:   352 TALHVAAHCGHYKVAKVLL----DKKASPNAKALNGFTPLHIACKKNRIRVMELLLKHGA 407

Query:   375 NINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQ 434
             +I + T +G T   + A   H   +  L   GA     N  G+ A  +A  S    G  +
Sbjct:   408 SIQAVTESGLTPIHVAAFMGHVNIVSQLMHHGASPNTTNVRGETALHMAARS----GQAE 463

Query:   435 AVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEW-ADVDLDEQDXXXXXXXXX 493
              V   ++ G  +++      +PL    +    D +++L++  A  +              
Sbjct:   464 VVRYLVQDGAQVEAKAKDDQTPLHISARLGKADIVQQLLQQGASPNAATTSGYTPLHLAA 523

Query:   494 XXXXXXXXXFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSA 553
                      F  LL  GA++ +  K G T + +A      EV   ++L+ +      G +
Sbjct:   524 REGHEDVAAF--LLDHGASLSITTKKGFTPLHVAAKYGKLEVAS-LLLQKSASPDAAGKS 580

Query:   554 GFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKC 613
             G   LH AA   +  +   L+ +    +A+  +GYTPL +AAK     +   L+  GA  
Sbjct:   581 GLTPLHVAAHYDNQKVALLLLDQGASPHAAAKNGYTPLHIAAKKNQMDIATSLLEYGADA 640

Query:   614 DIENARNETALALA 627
             +    +   ++ LA
Sbjct:   641 NAVTRQGIASVHLA 654

GO:0000281 "cytokinesis after mitosis" evidence=ISO

GO:0005200 "structural constituent of cytoskeleton" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISO

GO:0007009 "plasma membrane organization" evidence=ISO

GO:0007165 "signal transduction" evidence=IEA

GO:0007409 "axonogenesis" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP

GO:0010650 "positive regulation of cell communication by electrical coupling" evidence=ISO

GO:0014704 "intercalated disc" evidence=ISO;IDA

GO:0016020 "membrane" evidence=IDA

GO:0016323 "basolateral plasma membrane" evidence=ISO

GO:0016328 "lateral plasma membrane" evidence=ISO

GO:0016529 "sarcoplasmic reticulum" evidence=ISO

GO:0019228 "regulation of action potential in neuron" evidence=IMP

GO:0030018 "Z disc" evidence=ISO

GO:0030054 "cell junction" evidence=IEA

GO:0030424 "axon" evidence=IDA

GO:0030425 "dendrite" evidence=ISO

GO:0031594 "neuromuscular junction" evidence=ISO

GO:0033268 "node of Ranvier" evidence=ISO;IDA

GO:0033270 "paranode region of axon" evidence=IDA

GO:0034112 "positive regulation of homotypic cell-cell adhesion" evidence=ISO

GO:0042383 "sarcolemma" evidence=ISO

GO:0043001 "Golgi to plasma membrane protein transport" evidence=ISO

GO:0043005 "neuron projection" evidence=ISO

GO:0043194 "axon initial segment" evidence=ISO;IDA

GO:0045184 "establishment of protein localization" evidence=ISO

GO:0045202 "synapse" evidence=IDA

GO:0045211 "postsynaptic membrane" evidence=ISO

GO:0045760 "positive regulation of action potential" evidence=TAS

GO:0050808 "synapse organization" evidence=IMP

GO:0071709 "membrane assembly" evidence=ISO

GO:0072659 "protein localization to plasma membrane" evidence=ISO;IDA;IMP

GO:0072660 "maintenance of protein location in plasma membrane" evidence=ISO

GO:0072661 "protein targeting to plasma membrane" evidence=ISO;IMP

GO:0090314 "positive regulation of protein targeting to membrane" evidence=ISO

UNIPROTKB|K7GLA8 ANK3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 231 (86.4 bits), Expect = 3.5e-19, Sum P(2) = 3.5e-19
 Identities = 123/554 (22%), Positives = 218/554 (39%)

Query:    91 TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA-AVREDHLEILDLLIKXXXXXXX 149
             T L++AA   +L +V+ LL  GA+ +     G+   A A+++ H +++ LL++       
Sbjct:   104 TPLYMAAQENHLEVVKFLLDNGASQSLATEDGFTPLAVALQQGHDQVVSLLLENDTKGKV 163

Query:   150 XXXXXXXTSYLGQARPAELLMATDL---IRPQVSVHALVSACFRGFVNVVDTLIKCGVDA 206
                     +     + A LL+  D    +  +     L  A   G +NV   L+     A
Sbjct:   164 RLPALHIAARKDDTKAAALLLQNDNNADVESKSGFTPLHIAAHYGNINVATLLLN---RA 220

Query:   207 NAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVR-------MG 259
              A+D        P LH          A      ++V+LLL  G K+D K R        G
Sbjct:   221 AAVDFTARNDITP-LHV---------ASKRGNANMVKLLLDRGAKIDAKTRDGLTPLHCG 270

Query:   260 AWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILH---MLFQHISP--NILHNGR 314
             A S      E L   A           +  +  + G  L+   +L QH  P  ++ ++  
Sbjct:   271 ARSGHEQVVEMLLDRAAPILSKTKNGLSPLHMATQGDHLNCVQLLLQHNVPVDDVTNDYL 330

Query:   315 TLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGC 374
             T +H A  C + +  ++LL    DK+      +     P+H+A +    K++  L+  G 
Sbjct:   331 TALHVAAHCGHYKVAKVLL----DKKANPNAKALNGFTPLHIACKKNRIKVMELLLKHGA 386

Query:   375 NINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQ 434
             +I + T +G T   + A   H   +  L   GA     N  G+ A  +A  S    G  +
Sbjct:   387 SIQAVTESGLTPIHVAAFMGHVNIVSQLMHHGASPNTTNVRGETALHMAARS----GQAE 442

Query:   435 AVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEW-ADVDLDEQDXXXXXXXXX 493
              V   ++ G  +++      +PL    +    D +++L++  A  +              
Sbjct:   443 VVRYLVQDGAQVEAKAKDDQTPLHISARLGKADIVQQLLQQGASPNAATTSGYTPLHLSA 502

Query:   494 XXXXXXXXXFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSA 553
                      F  LL  GA++ +  K G T + +A      EV   ++L+ +      G +
Sbjct:   503 REGHEDVAAF--LLDHGASLSITTKKGFTPLHVAAKYGKLEVAN-LLLQKSASPDAAGKS 559

Query:   554 GFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKC 613
             G   LH AA   +  +   L+ +    +A+  +GYTPL +AAK     +   L+  GA  
Sbjct:   560 GLTPLHVAAHYDNQKVALLLLDQGASPHAAAKNGYTPLHIAAKKNQMDIATTLLEYGADA 619

Query:   614 DIENARNETALALA 627
             +    +   ++ LA
Sbjct:   620 NAVTRQGIASVHLA 633

GO:0007165 "signal transduction" evidence=IEA

MGI|MGI:88024 Ank1 "ankyrin 1, erythroid" [Mus musculus (taxid:10090)]

 Score = 214 (80.4 bits), Expect = 6.6e-19, Sum P(2) = 6.6e-19
 Identities = 121/545 (22%), Positives = 216/545 (39%)

Query:    87 KTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATT-AAVREDHLEILDLLIKXXX 145
             K E+T L  AA  G++ +   LL  GA +  K   G +    A + DHL+ + LL++   
Sbjct:   266 KDELTPLHCAARNGHVRISEILLDHGAPIQAKTKNGLSPIHMAAQGDHLDCVRLLLQYNA 325

Query:   146 XXXXXXXXXXX----TSYLGQARPAELLM---ATDLIRPQVSVHALVSACFRGFVNVVDT 198
                             ++ G  R A++L+   A    R       L  AC +  + V++ 
Sbjct:   326 EIDDITLDHLTPLHVAAHCGHHRVAKVLLDKGAKPNSRALNGFTPLHIACKKNHIRVMEL 385

Query:   199 LIKCGVDANAIDRVLLQSSKPALH-ANFDCNALVGAVVSRQISVVRLLLQAG-------V 250
             L+K G   +A+     +S    LH A+F     +G      + +V+ LLQ G       V
Sbjct:   386 LLKTGASIDAVT----ESGLTPLHVASF-----MG-----HLPIVKNLLQRGASPNVSNV 431

Query:   251 KMDIKVRMGAWSWDMDTGEEL-----RVGAGLAEDYCITWCAVEYFESSGAILHMLFQHI 305
             K++  + M A +   +  + L     +  A   +D     CA      +G +  +L    
Sbjct:   432 KVETPLHMAARAGHTEVAKYLLQNKAKANAKAKDDQTPLHCAAR-IGHTGMVKLLLENGA 490

Query:   306 SPNILHN-GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAK 364
             SPN+    G T +H A    +      LL    +KE      +K    P+H+AA+ G  +
Sbjct:   491 SPNLATTAGHTPLHTAAREGHVDTALALL----EKEASQACMTKKGFTPLHVAAKYGKVR 546

Query:   365 ILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAK 424
             +   L+    + N+    G T   +   + + + +K L   G       + G     IA 
Sbjct:   547 LAELLLEHDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAA 606

Query:   425 SSRWTLGFQQAVVDSI-RSGNIIQSSNASRFSPLMFVTQANDVDALKKLI-EWADVDLDE 482
                     Q  V  S+ + G    + +    +PL    Q    + +  L+ + A+ +L  
Sbjct:   607 KQN-----QIEVARSLLQYGGSANAESVQGVTPLHLAAQEGHTEMVALLLSKQANGNLGN 661

Query:   483 QDXXXXXXXXXXXXXXXXXXFRLLLHAGANIKLQNKYGETAITLAELNRNGEV-LEQVIL 541
             +                     L+ H G  +    + G T + +A  +  G + L + +L
Sbjct:   662 KSGLTPLHLVSQEGHVPVADV-LIKH-GVTVDATTRMGYTPLHVA--SHYGNIKLVKFLL 717

Query:   542 EYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGS 601
             ++  +   K   G+  LH+AA++G  D+V  L+      N   ++G TPL +A + G+ S
Sbjct:   718 QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSNGTTPLAIAKRLGYIS 777

Query:   602 VCQLL 606
             V  +L
Sbjct:   778 VTDVL 782

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISO

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IMP

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISO

GO:0007165 "signal transduction" evidence=IEA

GO:0008093 "cytoskeletal adaptor activity" evidence=ISO

GO:0010638 "positive regulation of organelle organization" evidence=ISO

GO:0014731 "spectrin-associated cytoskeleton" evidence=ISO;IMP

GO:0015672 "monovalent inorganic cation transport" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0016529 "sarcoplasmic reticulum" evidence=ISO

GO:0019899 "enzyme binding" evidence=ISO

GO:0030018 "Z disc" evidence=ISO

GO:0030507 "spectrin binding" evidence=ISO

GO:0030673 "axolemma" evidence=ISO

GO:0030863 "cortical cytoskeleton" evidence=IDA

GO:0031430 "M band" evidence=ISO

GO:0031672 "A band" evidence=ISO

GO:0042383 "sarcolemma" evidence=ISO

GO:0043005 "neuron projection" evidence=ISO

GO:0045211 "postsynaptic membrane" evidence=ISO

GO:0048821 "erythrocyte development" evidence=IMP

GO:0051117 "ATPase binding" evidence=ISO

GO:0072661 "protein targeting to plasma membrane" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00035060001 SubName- Full=Chromosome chr1 scaffold_75, whole genome shotgun sequence; (762 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	758
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-25
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-17
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-17
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-16
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	6e-16
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	8e-15
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-14
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	3e-13
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-13
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	7e-12
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-11
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	1e-10
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-10
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	3e-10
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	4e-10
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-09
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	4e-09
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	6e-09
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-08
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	8e-08
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-07
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-07
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	3e-07
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	4e-07
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	5e-07
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-06
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-06
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	4e-06
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-06
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	8e-06
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-05
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	1e-05
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	1e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-05
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-05
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-05
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-05
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-05
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	3e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	3e-05
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	5e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	6e-05
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	2e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	2e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	3e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	4e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	7e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	8e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	0.001
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.001
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.001
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	0.003
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.003
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.003
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	0.003
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.003
smart00248	30	smart00248, ANK, ankyrin repeats	0.003
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  100 bits (252), Expect = 3e-25
 Identities = 49/127 (38%), Positives = 76/127 (59%), Gaps = 1/127 (0%)

Query: 481 DEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVI 540
           + +D DG +   +AA+ GH+E  +LLL  GA++  ++  G T + LA  N + E+++ ++
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVK-LL 59

Query: 541 LEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHG 600
           LE   +   +   G   LH AA+ G+ D+V  L+    DVNA D DG TPL LAAK+GH 
Sbjct: 60  LEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHL 119

Query: 601 SVCQLLI 607
            V +LL+
Sbjct: 120 EVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 79.3 bits (196), Expect = 1e-17
 Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 4/106 (3%)

Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
           +GRT +H A    +   V+LLL    D    V         P+HLAA+ G  +I++ L+ 
Sbjct: 6   DGRTPLHLAASNGHLEVVKLLLENGAD----VNAKDNDGRTPLHLAAKNGHLEIVKLLLE 61

Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQ 417
            G ++N+R   G T   + AR  + + +K L   GAD+   +  G+
Sbjct: 62  KGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGR 107

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 76.9 bits (190), Expect = 3e-17
 Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 36/126 (28%)

Query: 492 MIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKG 551
            +AA  G++E  +LLL  GA++ L +                                  
Sbjct: 2   HLAAKNGNLELVKLLLEKGADVNLGDTD-------------------------------- 29

Query: 552 SAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGA 611
                ALH AA+ G+ ++V  L+    DVNA D DG T L LAA++G+  + +LL+  GA
Sbjct: 30  ----TALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGA 85

Query: 612 KCDIEN 617
             ++++
Sbjct: 86  DINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 74.6 bits (184), Expect = 2e-16
 Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 317 IHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNI 376
           +H A    N   V+LLL    D               +HLAAR G+ +I++ L+  G ++
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNL------GDTDTALHLAARNGNLEIVKLLLEHGADV 54

Query: 377 NSRTAAGETAAMICARYKHEECLKFLASEGADLGLIN 413
           N++   G TA  + AR  + E +K L   GAD+ L +
Sbjct: 55  NAKDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 74.3 bits (183), Expect = 6e-16
 Identities = 37/155 (23%), Positives = 67/155 (43%), Gaps = 38/155 (24%)

Query: 353 PIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLI 412
           P+HLAA  G  ++++ L+  G ++N++   G T   + A+  H E +K L  +GAD+   
Sbjct: 10  PLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNAR 69

Query: 413 NYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKL 472
           +  G                                      +PL    +  ++D +K L
Sbjct: 70  DKDGN-------------------------------------TPLHLAARNGNLDVVKLL 92

Query: 473 IEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLL 507
           ++    D++ +D DG +   +AA  GH+E  +LLL
Sbjct: 93  LK-HGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 71.3 bits (175), Expect = 8e-15
 Identities = 38/161 (23%), Positives = 67/161 (41%), Gaps = 38/161 (23%)

Query: 377 NSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAV 436
           N+R   G T   + A   H E +K L   GAD+   +  G+                   
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGR------------------- 41

Query: 437 VDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAA 496
                             +PL    +   ++ +K L+E    D++ +D DG +   +AA 
Sbjct: 42  ------------------TPLHLAAKNGHLEIVKLLLE-KGADVNARDKDGNTPLHLAAR 82

Query: 497 AGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLE 537
            G+++  +LLL  GA++  ++K G T + LA  N + EV++
Sbjct: 83  NGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVK 123

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 69.3 bits (170), Expect = 3e-14
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 4/92 (4%)

Query: 311 HNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLI 370
           ++GRT +H A    +   V+LLL    D    V    K    P+HLAAR G+  +++ L+
Sbjct: 38  NDGRTPLHLAAKNGHLEIVKLLLEKGAD----VNARDKDGNTPLHLAARNGNLDVVKLLL 93

Query: 371 SAGCNINSRTAAGETAAMICARYKHEECLKFL 402
             G ++N+R   G T   + A+  H E +K L
Sbjct: 94  KHGADVNARDKDGRTPLHLAAKNGHLEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 69.9 bits (170), Expect = 3e-13
 Identities = 55/227 (24%), Positives = 92/227 (40%), Gaps = 32/227 (14%)

Query: 429 TLGFQQAVVDSIRSGNIIQSSNASRFSPLM----FVTQANDVDALKKLIEWADVDLDEQD 484
                  +V  +   ++  S+ + +   L      +  A+  + L KLI   D  L  +D
Sbjct: 13  KCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLI--VDRHLAARD 70

Query: 485 ADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYA 544
            DG      AA+ G  +  +LLL +GA++  ++  G+T + LA LN N       + +  
Sbjct: 71  LDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLL 130

Query: 545 LEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQ 604
           LE G                          +     N  D DG TPL  AA +G   + +
Sbjct: 131 LEAG--------------------------ADLDVNNLRDEDGNTPLHWAALNGDADIVE 164

Query: 605 LLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLD 651
           LL+ +GA  +  N+   TAL  A +NG     + ++   L L+L+  
Sbjct: 165 LLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKF 211

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 65.0 bits (159), Expect = 5e-13
 Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 2/75 (2%)

Query: 558 LHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIEN 617
           LH AAK G+ +LV  L+ +  DVN  D D  T L LAA++G+  + +LL+  GA  + ++
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 618 ARNETALALARENGN 632
               TAL LA  NGN
Sbjct: 59  KDGNTALHLAARNGN 73

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 61.9 bits (151), Expect = 7e-12
 Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 39/129 (30%)

Query: 457 LMFVTQANDVDALKKLIEW-ADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKL 515
           L    +  +++ +K L+E  ADV+L + D    +A  +AA  G++E  +LLL  GA++  
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD----TALHLAARNGNLEIVKLLLEHGADVNA 56

Query: 516 QNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVS 575
           ++K G T                                  ALH AA+ G+ ++V  L+ 
Sbjct: 57  KDKDGNT----------------------------------ALHLAARNGNLEIVKLLLE 82

Query: 576 RCYDVNASD 584
              D+N  D
Sbjct: 83  HGADINLKD 91

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 61.2 bits (149), Expect = 3e-11
 Identities = 46/159 (28%), Positives = 61/159 (38%), Gaps = 44/159 (27%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKAGACQ 147
           T L LAA  G+L +V+ LL  GA+VN K   G   T    A +  HLEI+ LL++ GA  
Sbjct: 9   TPLHLAASNGHLEVVKLLLENGADVNAKDNDGR--TPLHLAAKNGHLEIVKLLLEKGAD- 65

Query: 148 EACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDAN 207
                 +      G                      L  A   G ++VV  L+K G D N
Sbjct: 66  ------VNARDKDGN-------------------TPLHLAARNGNLDVVKLLLKHGADVN 100

Query: 208 AIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLL 246
           A D                   L  A  +  + VV+LLL
Sbjct: 101 ARD-------------KDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 64.5 bits (157), Expect = 1e-10
 Identities = 48/185 (25%), Positives = 86/185 (46%), Gaps = 4/185 (2%)

Query: 437 VDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAA 496
           V  +   N  +  + +  S L+ V    +   L++L++ A +D D  D+ G +   IAA+
Sbjct: 509 VGDLLGDNGGEHDDPNMASNLLTVASTGNAALLEELLK-AKLDPDIGDSKGRTPLHIAAS 567

Query: 497 AGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFY 556
            G+ +   +LL    N+ +++  G TA+  A   ++ ++    IL Y         A   
Sbjct: 568 KGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFR--IL-YHFASISDPHAAGD 624

Query: 557 ALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIE 616
            L  AAKR D   +  L+ +  +V++ D  G T L +A    H  + +LLI +GA  D  
Sbjct: 625 LLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKA 684

Query: 617 NARNE 621
           N  ++
Sbjct: 685 NTDDD 689

Length = 823

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 57.3 bits (139), Expect = 2e-10
 Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 40/130 (30%)

Query: 388 MICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQ 447
            + A+  + E +K L  +GAD+ L +                                  
Sbjct: 2   HLAAKNGNLELVKLLLEKGADVNLGDTD-------------------------------- 29

Query: 448 SSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLL 507
                  + L    +  +++ +K L+E    D++ +D DG +A  +AA  G++E  +LLL
Sbjct: 30  -------TALHLAARNGNLEIVKLLLE-HGADVNAKDKDGNTALHLAARNGNLEIVKLLL 81

Query: 508 HAGANIKLQN 517
             GA+I L++
Sbjct: 82  EHGADINLKD 91

Length = 91

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 63.2 bits (153), Expect = 3e-10
 Identities = 92/389 (23%), Positives = 154/389 (39%), Gaps = 78/389 (20%)

Query: 296 AILHMLFQHISPNILHNGR--------TLIHHAILCNNARAVELLLNCAVDKEFPVQTYS 347
           A +H+L + IS N +H  +         LI   I  +     E+LL    D       Y 
Sbjct: 120 ACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLEGGADVN-AKDIYC 178

Query: 348 KTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGA 407
            T   PIH AA  G+AK++  L+S G ++N       +        K+ + +K +    +
Sbjct: 179 IT---PIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRS 235

Query: 408 -----DLGLINYAGQCANSIAKSS--RWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFV 460
                DL L+       N   ++S   +  GF    +D  ++            +PL   
Sbjct: 236 NINKNDLSLLK---AIRNEDLETSLLLYDAGFSVNSIDDCKN------------TPLHHA 280

Query: 461 TQANDVDAL-KKLIEWADVDLDEQDADGFSAAMIAAAAGH-VEAFRLLLHAGANIKLQ-- 516
           +QA  +  L  KL+E    D++ ++  G +   + A  G+  E  R L+  GA++     
Sbjct: 281 SQAPSLSRLVPKLLERG-ADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADR 339

Query: 517 ------------NKYGETAITLAELN-------------------RNGEVLEQVILEYAL 545
                       ++  +  ITL EL                    RN  V+   +L+Y  
Sbjct: 340 LYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGA 399

Query: 546 E---EGQK-GSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSG-HG 600
           +     QK G+A  +AL        +  V TL+ R  +VN+ + D  TPL  A K     
Sbjct: 400 DIEALSQKIGTALHFALCGT---NPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKL 456

Query: 601 SVCQLLISSGAKCDIENARNETALALARE 629
            V ++L+ +GA  +  N +N+  L +A E
Sbjct: 457 DVIEMLLDNGADVNAINIQNQYPLLIALE 485

Length = 682

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 62.4 bits (152), Expect = 4e-10
 Identities = 51/210 (24%), Positives = 87/210 (41%), Gaps = 24/210 (11%)

Query: 353 PIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHE-----ECLKFLASEGA 407
           P++LA    +  +++ L+  G +INS T    T     +  K+      E +K L   GA
Sbjct: 38  PLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGA 97

Query: 408 DLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQAN--D 465
           ++   +  G      A S          V   + +G  +   N+   + L    ++N  D
Sbjct: 98  NVNAPDNNGITPLLYAISK--KSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKID 155

Query: 466 VDALKKLIEWA---------------DVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAG 510
           +  LK LI+                  V ++ +D  GF+    A    + E  + LL  G
Sbjct: 156 LKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLG 215

Query: 511 ANIKLQNKYGETAITLAELNRNGEVLEQVI 540
           AN  L NKYG+T + +A LN N E+ + ++
Sbjct: 216 ANPNLVNKYGDTPLHIAILNNNKEIFKLLL 245

Length = 422

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 53.4 bits (129), Expect = 2e-09
 Identities = 22/51 (43%), Positives = 34/51 (66%)

Query: 557 ALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLI 607
           ALH+AA  G  +LV  L+ +  D+N +D DG T L +AA++G+  V +LL+
Sbjct: 4   ALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 59.9 bits (145), Expect = 4e-09
 Identities = 43/179 (24%), Positives = 81/179 (45%), Gaps = 18/179 (10%)

Query: 357 AARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAG 416
            A  G+A +L  L+ A  + +   + G T   I A   +E+C+  L     ++ + +  G
Sbjct: 532 VASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANG 591

Query: 417 QCA--NSIAKSSR---WTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKK 471
             A  N+I+         L    ++ D   +G++           L    + ND+ A+K+
Sbjct: 592 NTALWNAISAKHHKIFRILYHFASISDPHAAGDL-----------LCTAAKRNDLTAMKE 640

Query: 472 LIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGE-TAITLAEL 529
           L++   +++D +D  G +A  +A A  HV+  RLL+  GA++   N   + +   L EL
Sbjct: 641 LLKQG-LNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELREL 698

Length = 823

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 58.5 bits (141), Expect = 6e-09
 Identities = 46/179 (25%), Positives = 79/179 (44%), Gaps = 4/179 (2%)

Query: 454 FSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANI 513
            SP+    +  D +A+K L++   +  D +  D  S    A   G V+A   LL  G   
Sbjct: 36  ISPIKLAMKFRDSEAIKLLMKHGAIP-DVKYPDIESELHDAVEEGDVKAVEELLDLGKFA 94

Query: 514 K-LQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHT 572
             +  K G T + LA + +  +++ ++++    +     +  F  LH A   GD   +  
Sbjct: 95  DDVFYKDGMTPLHLATILKKLDIM-KLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIEL 153

Query: 573 LVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNE-TALALAREN 630
           L+     ++  D  G TPL++A   G  ++C++L+ SGA  D         AL  A EN
Sbjct: 154 LIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIEN 212

Length = 413

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 51.1 bits (123), Expect = 3e-08
 Identities = 29/63 (46%), Positives = 36/63 (57%), Gaps = 5/63 (7%)

Query: 86  FKTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIK 142
                TAL LAA  GNL +V+ LL  GA+VN K   G   TA   A R  +LEI+ LL++
Sbjct: 25  LGDTDTALHLAARNGNLEIVKLLLEHGADVNAKDKDGN--TALHLAARNGNLEIVKLLLE 82

Query: 143 AGA 145
            GA
Sbjct: 83  HGA 85

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 53.7 bits (128), Expect = 8e-08
 Identities = 35/168 (20%), Positives = 62/168 (36%), Gaps = 34/168 (20%)

Query: 375 NINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQ 434
           ++ +R   G       A    ++ +K L + GAD+   +  G     +A           
Sbjct: 65  HLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLA----------- 113

Query: 435 AVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADV--DLDEQDADGFSAAM 492
                  +GN                    +++  K L+E        + +D DG +   
Sbjct: 114 -----ALNGN----------------PPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLH 152

Query: 493 IAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVI 540
            AA  G  +   LLL AGA+   +N YG TA+  A  N   E+++ ++
Sbjct: 153 WAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLL 200

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 49.9 bits (120), Expect = 1e-07
 Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 354 IHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLIN 413
           +HLAA+ G+ ++++ L+  G ++N      +TA  + AR  + E +K L   GAD+   +
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 414 YAGQCA 419
             G  A
Sbjct: 59  KDGNTA 64

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 48.4 bits (116), Expect = 1e-07
 Identities = 17/53 (32%), Positives = 25/53 (47%)

Query: 350 ELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFL 402
               +H AA  G  ++++ L+  G +IN     G TA  I A   + E LK L
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 19/56 (33%), Positives = 32/56 (57%)

Query: 472 LIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLA 527
           L+E   +DL+  D +G +   +AA  G +E  + LL  G ++ L++  G TA+ LA
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 24/52 (46%), Positives = 33/52 (63%)

Query: 581 NASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGN 632
           NA D DG TPL LAA +GH  V +LL+ +GA  + ++    T L LA +NG+
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGH 52

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 51.7 bits (123), Expect = 3e-07
 Identities = 33/108 (30%), Positives = 47/108 (43%), Gaps = 6/108 (5%)

Query: 311 HNGRTLIHHAILCNN-----ARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKI 365
            +G T +H A L  N         +LLL    D +       +    P+H AA  G A I
Sbjct: 104 ADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLR-DEDGNTPLHWAALNGDADI 162

Query: 366 LRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLIN 413
           +  L+ AG + NSR + G TA    A+    E +K L  +G  L L+ 
Sbjct: 163 VELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLK 210

Length = 235

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 52.7 bits (127), Expect = 4e-07
 Identities = 63/292 (21%), Positives = 103/292 (35%), Gaps = 49/292 (16%)

Query: 353 PIHLAARLGS---AKILRRLISAGCNINSRTAAGETAAMICARYKHEE-CLKFLASEGAD 408
           P+HL     S     I+R L+ AG ++N+    G T   +          +K L   GAD
Sbjct: 50  PLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGAD 109

Query: 409 LGLINYAGQCAN---SIAKSSRWTLGFQQAVVDS-IRSGNIIQSSNASRFSPLMFVTQAN 464
              +N   +       +  S          V+   +R G  + + +    +PL  + ++ 
Sbjct: 110 ---VNAKDKVGRTPLHVYLSGFNI---NPKVIRLLLRKGADVNALDLYGMTPLAVLLKSR 163

Query: 465 DVDA--LKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGAN-IKLQNKYGE 521
           + +   L+ LI+ A  D+   D    S                LLH      K + +   
Sbjct: 164 NANVELLRLLID-AGADVYAVDDRFRS----------------LLHHHLQSFKPRARIVR 206

Query: 522 TAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVN 581
             I         ++L    L               A   + KR    LV  L+     +N
Sbjct: 207 ELIRAGCDPAATDMLGNTPLHSM------------ATGSSCKRS---LVLPLLIAGISIN 251

Query: 582 ASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNG 633
           A +  G TPL  AA   +   C+ LI+ GA  +  ++   T L+L   N NG
Sbjct: 252 ARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNG 303

Length = 471

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 52.7 bits (126), Expect = 5e-07
 Identities = 55/247 (22%), Positives = 98/247 (39%), Gaps = 28/247 (11%)

Query: 353 PIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLI 412
           P+  A R G AKI+   I  G +IN          +   +    + +K L   G D  ++
Sbjct: 38  PLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSIL 97

Query: 413 NYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKL 472
                C              +  +   +  G  +   +A   + L +  +  D++++K L
Sbjct: 98  PIP--CIE------------KDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKML 143

Query: 473 IEW-ADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNR 531
            E+ ADV++  +D +G     IA      +  +LLL  GA   +++  GE+      L+ 
Sbjct: 144 FEYGADVNI--EDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESP-----LHN 196

Query: 532 NGEVLEQVILEYALEEGQ----KGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADG 587
             E  +   ++  ++ G     K   GF  LH A    +   +  L++    +N  D DG
Sbjct: 197 AAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIH-NRSAIELLINNA-SINDQDIDG 254

Query: 588 YTPLMLA 594
            TPL  A
Sbjct: 255 STPLHHA 261

Length = 434

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 51.2 bits (123), Expect = 1e-06
 Identities = 53/236 (22%), Positives = 97/236 (41%), Gaps = 26/236 (11%)

Query: 446 IQSSNASRFSPLMFVTQA----NDVDALKKLIEWADVDLDEQDADGFSAAMIAAAA--GH 499
           I SS  +  +PL +++       DV  + KL+     +++  D +G +  + A +     
Sbjct: 61  INSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNS 120

Query: 500 VEAFRLLLHAGANIKLQNKYGETAITLA-ELNRNG-EVLEQVI-----------LEYALE 546
                 LL  GAN+ ++N  GE  + L  E N+   ++L+ +I           + Y L 
Sbjct: 121 YSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLS 180

Query: 547 EG----QKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSV 602
            G     K   GF  LH A    + + V  L+    + N  +  G TPL +A  + +  +
Sbjct: 181 YGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEI 240

Query: 603 CQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKH 658
            +LL+++G    I     ET L    ++ N      ++   +    +LD  + K  
Sbjct: 241 FKLLLNNGP--SI-KTIIETLLYFKDKDLNTITKIKMLKKSIMYMFLLDPGFYKNR 293

Length = 422

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 51.2 bits (123), Expect = 1e-06
 Identities = 53/264 (20%), Positives = 96/264 (36%), Gaps = 50/264 (18%)

Query: 313 GRTLIH---HAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGS-AKILRR 368
           G+T +H   H         V LLL    D    V    +    P+HL     +   +++ 
Sbjct: 47  GKTPLHLYLHYSSEKVKDIVRLLLEAGAD----VNAPERCGFTPLHLYLYNATTLDVIKL 102

Query: 369 LISAGCNINSRTAAGETAAMICARYK--HEECLKFLASEGADLGLINYAGQCANSIA--- 423
           LI AG ++N++   G T   +       + + ++ L  +GAD+  ++  G     +A   
Sbjct: 103 LIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYG--MTPLAVLL 160

Query: 424 KSSRWTL---------GFQQAVVDS-----------------------IRSGNIIQSSNA 451
           KS    +         G     VD                        IR+G    +++ 
Sbjct: 161 KSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDM 220

Query: 452 SRFSPLMFVTQANDVDALK--KLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHA 509
              +PL  +   +         L+  A + ++ ++  G +    AA   +  A R L+  
Sbjct: 221 LGNTPLHSMATGSSCKRSLVLPLLI-AGISINARNRYGQTPLHYAAVFNNPRACRRLIAL 279

Query: 510 GANIKLQNKYGETAITLAELNRNG 533
           GA+I   +  G T ++L   N NG
Sbjct: 280 GADINAVSSDGNTPLSLMVRNNNG 303

Length = 471

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 6/84 (7%)

Query: 297 ILHMLFQH-ISPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIH 355
           ++ +L +     N+     T +H A    N   V+LLL    +    V    K     +H
Sbjct: 12  LVKLLLEKGADVNLGDTD-TALHLAARNGNLEIVKLLL----EHGADVNAKDKDGNTALH 66

Query: 356 LAARLGSAKILRRLISAGCNINSR 379
           LAAR G+ +I++ L+  G +IN +
Sbjct: 67  LAARNGNLEIVKLLLEHGADINLK 90

Length = 91

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 44.3 bits (105), Expect = 4e-06
 Identities = 21/49 (42%), Positives = 30/49 (61%)

Query: 579 DVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALA 627
           D+NA+D +G TPL LAAK G   + Q L+  G   ++ ++   TAL LA
Sbjct: 8   DLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 44.9 bits (107), Expect = 5e-06
 Identities = 36/118 (30%), Positives = 47/118 (39%), Gaps = 27/118 (22%)

Query: 93  LFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTAAVREDHLEILDLLIKAGACQEACEE 152
           L LAA  GNL LV+ LL  GA+VN       A   A R  +LEI+ LL++ GA       
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLG-DTDTALHLAARNGNLEIVKLLLEHGA------- 52

Query: 153 ALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDANAID 210
            +      G                     AL  A   G + +V  L++ G D N  D
Sbjct: 53  DVNAKDKDGNT-------------------ALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 48.5 bits (116), Expect = 8e-06
 Identities = 58/304 (19%), Positives = 104/304 (34%), Gaps = 85/304 (27%)

Query: 81  VVYEEFKTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGY------ATTAAVREDHL 134
           +    +K  V  L+LA  A N+ +V+ LL  GA++N             +       D  
Sbjct: 27  LNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVK 86

Query: 135 EILDLLIKAGACQEACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVN 194
           EI+ LL++ GA   A               P               +   +S       +
Sbjct: 87  EIVKLLLEYGANVNAP--------DNNGITP---------------LLYAISKKS-NSYS 122

Query: 195 VVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDI 254
           +V+ L+  G + N  +       +  LH   + N          + +++LL+  GV ++ 
Sbjct: 123 IVEYLLDNGANVNIKN----SDGENLLHLYLESN-------KIDLKILKLLIDKGVDINA 171

Query: 255 KVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHI-SPNILHNG 313
           K R                              V Y  S G         I   ++   G
Sbjct: 172 KNR------------------------------VNYLLSYGV-------PINIKDV--YG 192

Query: 314 RTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAG 373
            T +H+A+  NN   V+ LL+   +        +K    P+H+A    + +I + L++ G
Sbjct: 193 FTPLHYAVYNNNPEFVKYLLDLGAN----PNLVNKYGDTPLHIAILNNNKEIFKLLLNNG 248

Query: 374 CNIN 377
            +I 
Sbjct: 249 PSIK 252

Length = 422

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 45/224 (20%), Positives = 70/224 (31%), Gaps = 57/224 (25%)

Query: 193 VNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKM 252
             +V  L++ G + NA D        P L+A            S   S+V  LL  G  +
Sbjct: 86  KEIVKLLLEYGANVNAPDNN---GITPLLYAISKK--------SNSYSIVEYLLDNGANV 134

Query: 253 DIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHN 312
           +IK                                +  +  S          I   IL  
Sbjct: 135 NIK-------------------------NSDGENLLHLYLESN--------KIDLKIL-- 159

Query: 313 GRTLIHHAILCNNARAVELLLNCAVDKEFPVQT---YSKTELRPIHLAARLGSAKILRRL 369
            + LI   +  N    V  LL+       P+     Y  T   P+H A    + + ++ L
Sbjct: 160 -KLLIDKGVDINAKNRVNYLLS----YGVPINIKDVYGFT---PLHYAVYNNNPEFVKYL 211

Query: 370 ISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLIN 413
           +  G N N     G+T   I     ++E  K L + G  +  I 
Sbjct: 212 LDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKTII 255

Length = 422

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 48.1 bits (114), Expect = 1e-05
 Identities = 47/165 (28%), Positives = 71/165 (43%), Gaps = 11/165 (6%)

Query: 486 DGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYAL 545
           DG S   +A      EA +LL+  GA   +  KY +    L +    G+V     +E  L
Sbjct: 34  DGISPIKLAMKFRDSEAIKLLMKHGAIPDV--KYPDIESELHDAVEEGDV---KAVEELL 88

Query: 546 EEGQKGSAGFYA-----LHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHG 600
           + G+     FY      LH A      D++  L++R  D +  + D ++PL LA   G  
Sbjct: 89  DLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDI 148

Query: 601 SVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELA 645
              +LLI   A  DIE+    T L +A   G+      ++LD  A
Sbjct: 149 KGIELLIDHKACLDIEDCCGCTPLIIAMAKGD-IAICKMLLDSGA 192

Length = 413

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 48.1 bits (114), Expect = 1e-05
 Identities = 53/236 (22%), Positives = 87/236 (36%), Gaps = 44/236 (18%)

Query: 299 HMLFQHISPNI-LHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLA 357
            +L   I+PN  +++G + I  A+   ++ A++LL+        P   Y   E   +H A
Sbjct: 20  RLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGA---IPDVKYPDIE-SELHDA 75

Query: 358 ARLGSAKILRRLISAGCNINSRT-AAGETAAMICARYKHEECLKFLASEGADLGLINYAG 416
              G  K +  L+  G   +      G T   +    K  + +K L + GAD  +     
Sbjct: 76  VEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDI----- 130

Query: 417 QCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWA 476
                                            N  +FSPL       D+  ++ LI+  
Sbjct: 131 --------------------------------PNTDKFSPLHLAVMMGDIKGIELLID-H 157

Query: 477 DVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRN 532
              LD +D  G +  +IA A G +   ++LL +GANI    K G  A     +  N
Sbjct: 158 KACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENN 213

Length = 413

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 48.5 bits (116), Expect = 1e-05
 Identities = 75/311 (24%), Positives = 117/311 (37%), Gaps = 74/311 (23%)

Query: 105 VRKLLSLGANVNQKLFRG-YATTA------AVREDHLEILDLLIKAGA---CQEACEEAL 154
           VR+LL+ GA+VN   FRG Y  T          E   +I+ LL++AGA     E C    
Sbjct: 30  VRRLLAAGADVN---FRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTP 86

Query: 155 LETSYLGQARPAELLMATDLIRPQVSVHA-------LVSACFRGF---VNVVDTLIKCGV 204
           L   YL  A    L +   LI+    V+A        +     GF     V+  L++ G 
Sbjct: 87  LH-LYLYNA--TTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGA 143

Query: 205 DANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISV--VRLLLQAGVKM-DIKVRMGAW 261
           D NA+D              +    L   + SR  +V  +RLL+ AG  +  +  R    
Sbjct: 144 DVNALD-------------LYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDR---- 186

Query: 262 SWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHN--GRTLIHH 319
                +         L   +       + F+    I+  L +        +  G T +H 
Sbjct: 187 ---FRS---------LLHHHL------QSFKPRARIVRELIRAGCDPAATDMLGNTPLHS 228

Query: 320 AIL---CNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNI 376
                 C  +  + LL+            Y +T   P+H AA   + +  RRLI+ G +I
Sbjct: 229 MATGSSCKRSLVLPLLIAGISINA--RNRYGQT---PLHYAAVFNNPRACRRLIALGADI 283

Query: 377 NSRTAAGETAA 387
           N+ ++ G T  
Sbjct: 284 NAVSSDGNTPL 294

Length = 471

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 48.0 bits (114), Expect = 1e-05
 Identities = 44/204 (21%), Positives = 84/204 (41%), Gaps = 24/204 (11%)

Query: 436 VVDSIRSGNI------------IQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQ 483
           ++D+IRSG+             I   N     PL+   +    D +K LI+         
Sbjct: 39  LIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLID--------- 89

Query: 484 DADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEY 543
             +G   +++       +  + +L  G ++ +++   +T +  A    + E + +++ EY
Sbjct: 90  --NGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESI-KMLFEY 146

Query: 544 ALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVC 603
             +   +   G Y +H A K   FD++  L+ +    N  D +G +PL  AA+ G  +  
Sbjct: 147 GADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACI 206

Query: 604 QLLISSGAKCDIENARNETALALA 627
           +LLI  G     +     T L  A
Sbjct: 207 KLLIDHGNHIMNKCKNGFTPLHNA 230

Length = 434

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 19/51 (37%), Positives = 29/51 (56%)

Query: 487 GFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLE 537
           G +A   AA +G +E  + LL  G +I   ++ G TA+ +A  N N EVL+
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLK 51

Length = 54

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 47.3 bits (113), Expect = 2e-05
 Identities = 64/280 (22%), Positives = 109/280 (38%), Gaps = 55/280 (19%)

Query: 362 SAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLK---FLASEGADLGLINYAGQC 418
           + + +RRL++AG ++N R   G+T   +   Y  E+       L   GAD+         
Sbjct: 26  TVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAP------ 79

Query: 419 ANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPL-MFVTQANDVDALKKLIEWAD 477
                                 R G          F+PL +++  A  +D +K LI+ A 
Sbjct: 80  ---------------------ERCG----------FTPLHLYLYNATTLDVIKLLIK-AG 107

Query: 478 VDLDEQDADGFSA--AMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEV 535
            D++ +D  G +     ++    + +  RLLL  GA++   + YG T + +   +RN  V
Sbjct: 108 ADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANV 167

Query: 536 LEQVILEYALEEGQKGSA----GFYALHRAAK--RGDFDLVHTLVSRCYDVNASDADGYT 589
               +L   ++ G    A        LH   +  +    +V  L+    D  A+D  G T
Sbjct: 168 ---ELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNT 224

Query: 590 PLMLAAK--SGHGSVCQLLISSGAKCDIENARNETALALA 627
           PL   A   S   S+   L+ +G   +  N   +T L  A
Sbjct: 225 PLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYA 264

Length = 471

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 47.7 bits (113), Expect = 2e-05
 Identities = 24/75 (32%), Positives = 39/75 (52%)

Query: 558 LHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIEN 617
           LH A K+GD + +  L     DVN  D +G  P+ +A K     + +LL+  GA  ++++
Sbjct: 128 LHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKD 187

Query: 618 ARNETALALARENGN 632
              E+ L  A E G+
Sbjct: 188 NNGESPLHNAAEYGD 202

Length = 434

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 33/153 (21%), Positives = 56/153 (36%), Gaps = 38/153 (24%)

Query: 183 ALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVV 242
            L  A   G + VV  L++ G D NA D             N     L  A  +  + +V
Sbjct: 10  PLHLAASNGHLEVVKLLLENGADVNAKD-------------NDGRTPLHLAAKNGHLEIV 56

Query: 243 RLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLF 302
           +LLL+ G  ++ + + G      +T                    ++       ++ +L 
Sbjct: 57  KLLLEKGADVNARDKDG------NT----------PLHLAARNGNLD-------VVKLLL 93

Query: 303 QH-ISPNIL-HNGRTLIHHAILCNNARAVELLL 333
           +H    N    +GRT +H A    +   V+LLL
Sbjct: 94  KHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 29/133 (21%), Positives = 46/133 (34%), Gaps = 39/133 (29%)

Query: 127 AAVREDHLEILDLLIKAGACQEACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVS 186
            A    HLE++ LL++ GA   A           G+                     L  
Sbjct: 13  LAASNGHLEVVKLLLENGADVNAK-------DNDGR-------------------TPLHL 46

Query: 187 ACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLL 246
           A   G + +V  L++ G D NA D                   L  A  +  + VV+LLL
Sbjct: 47  AAKNGHLEIVKLLLEKGADVNARD-------------KDGNTPLHLAARNGNLDVVKLLL 93

Query: 247 QAGVKMDIKVRMG 259
           + G  ++ + + G
Sbjct: 94  KHGADVNARDKDG 106

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 46.8 bits (111), Expect = 3e-05
 Identities = 38/165 (23%), Positives = 69/165 (41%), Gaps = 13/165 (7%)

Query: 466 VDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKY-GETAI 524
            +  K +     V +D++  D    A I          +LLL  GA+I +++++ G TA+
Sbjct: 122 TNRYKNIQTIDLVYIDKKSKDDIIEAEIT---------KLLLSYGADINMKDRHKGNTAL 172

Query: 525 TLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASD 584
             A  N++  + E ++  Y              LH A K  +  +VH L+      +A D
Sbjct: 173 HYATENKDQRLTELLLS-YGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARD 231

Query: 585 ADGYTPLMLAAKSGHG-SVCQLLISSGAKCDIENA-RNETALALA 627
             G TPL ++        + +LL+  G   + ++     TAL  +
Sbjct: 232 KCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS 276

Length = 477

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 41.0 bits (97), Expect = 3e-05
 Identities = 15/32 (46%), Positives = 22/32 (68%)

Query: 586 DGYTPLMLAAKSGHGSVCQLLISSGAKCDIEN 617
           DG TPL LAA++GH  V +LL+ +GA  +  +
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 45.2 bits (106), Expect = 5e-05
 Identities = 45/189 (23%), Positives = 76/189 (40%), Gaps = 42/189 (22%)

Query: 329 VELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAM 388
            ELLL   VD+    +        P+H AA  G  KI++ L+++G ++N++ A G+T   
Sbjct: 54  SELLLKLIVDRHLAAR--DLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLH 111

Query: 389 ICARYKHE-----ECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSG 443
           + A   +      E  K L   GADL                                  
Sbjct: 112 LAALNGNPPEGNIEVAKLLLEAGADL---------------------------------- 137

Query: 444 NIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAF 503
           ++    +    +PL +     D D ++ L+E A  D + +++ G +A   AA  G +E  
Sbjct: 138 DVNNLRDEDGNTPLHWAALNGDADIVELLLE-AGADPNSRNSYGVTALDPAAKNGRIELV 196

Query: 504 RLLLHAGAN 512
           +LLL  G +
Sbjct: 197 KLLLDKGLH 205

Length = 235

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 40.7 bits (96), Expect = 6e-05
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 453 RFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLL 507
             + L     +  ++ +K L+E   VD++  D DG +A  IAA  G++E  +LLL
Sbjct: 1   GRTALHKAAISGRLELVKYLLE-KGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 27/128 (21%), Positives = 46/128 (35%), Gaps = 41/128 (32%)

Query: 128 AVREDHLEILDLLIKAGACQEACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSA 187
           A +  +LE++ LL++ GA     +                               AL  A
Sbjct: 4   AAKNGNLELVKLLLEKGADVNLGDTDT----------------------------ALHLA 35

Query: 188 CFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQ 247
              G + +V  L++ G D NA D                  AL  A  +  + +V+LLL+
Sbjct: 36  ARNGNLEIVKLLLEHGADVNAKD-------------KDGNTALHLAARNGNLEIVKLLLE 82

Query: 248 AGVKMDIK 255
            G  +++K
Sbjct: 83  HGADINLK 90

Length = 91

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 12/111 (10%)

Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSA-----GFYAL 558
            +LL  GA+   ++K G T + ++     G   +  IL+  LE G   +A     G  AL
Sbjct: 218 HILLENGASTDARDKCGNTPLHIS----VGYCKDYDILKLLLEHGVDVNAKSYILGLTAL 273

Query: 559 HRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHG-SVCQLLIS 608
           H + K      +  L+    D+N+ ++   TPL  A K     ++ ++LIS
Sbjct: 274 HSSIK--SERKLKLLLEYGADINSLNSYKLTPLSSAVKQYLCINIGRILIS 322

Length = 477

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 44.9 bits (106), Expect = 2e-04
 Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 479 DLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQ 538
           D + +D DG +   IA A GHV+  R+LL  GA+  L +K G+T + LAE N   EV+ Q
Sbjct: 107 DPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVV-Q 165

Query: 539 VILEYALEEGQKGSAG 554
           ++  ++    + G+  
Sbjct: 166 LLSRHSQCHFELGANA 181

Length = 664

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 38.3 bits (90), Expect = 3e-04
 Identities = 14/33 (42%), Positives = 22/33 (66%)

Query: 486 DGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNK 518
           DG +   +AA  GH+E  +LLL AGA++  ++K
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 43.7 bits (103), Expect = 4e-04
 Identities = 26/76 (34%), Positives = 37/76 (48%)

Query: 562 AKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNE 621
           A  GD      L++   D N  D DG TPL +A  +GH  V ++L+  GA   + +   +
Sbjct: 90  AASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGK 149

Query: 622 TALALARENGNGNEAE 637
           T L LA ENG     +
Sbjct: 150 TPLELAEENGFREVVQ 165

Length = 664

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 42.6 bits (100), Expect = 7e-04
 Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 2/106 (1%)

Query: 555 FYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCD 614
           F  LH+A +  + D+V +L++R ++VN  D    TPL +  K  +    + +I S  KC 
Sbjct: 38  FIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCS 97

Query: 615 IENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHTK 660
           +       A+  A  N N    + ++ +       +D  Y+ K +K
Sbjct: 98  VFYT--LVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSK 141

Length = 477

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 37.6 bits (88), Expect = 8e-04
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 5/56 (8%)

Query: 89  EVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLI 141
             TAL  AA +G L LV+ LL  G ++N+        TA   A    +LE+L LL+
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRT--DEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 41.8 bits (98), Expect = 0.001
 Identities = 43/215 (20%), Positives = 78/215 (36%), Gaps = 40/215 (18%)

Query: 448 SSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLL 507
           S++   F PL    +A ++D +K L+     ++++ D    +   I     +    + ++
Sbjct: 32  SASLIPFIPLHQAVEARNLDVVKSLLT-RGHNVNQPDHRDLTPLHIICKEPNKLGMKEMI 90

Query: 508 HAGANIKLQNK--YGETAITLAELNRNGEVLE---------------------------- 537
                   +    Y   AI  A  NRN E+ +                            
Sbjct: 91  ----RSINKCSVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIE 146

Query: 538 ----QVILEYALEEGQKG-SAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLM 592
               +++L Y  +   K    G  ALH A +  D  L   L+S   +VN  D    +PL 
Sbjct: 147 AEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLH 206

Query: 593 LAAKSGHGSVCQLLISSGAKCDIENARNETALALA 627
            A K  +  +  +L+ +GA  D  +    T L ++
Sbjct: 207 HAVKHYNKPIVHILLENGASTDARDKCGNTPLHIS 241

Length = 477

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 36.8 bits (86), Expect = 0.001
 Identities = 12/28 (42%), Positives = 21/28 (75%)

Query: 353 PIHLAARLGSAKILRRLISAGCNINSRT 380
           P+HLAAR G  ++++ L+ AG ++N+R 
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 14/28 (50%), Positives = 19/28 (67%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQK 118
           T L LAA  G+L +V+ LL  GA+VN +
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAR 31

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 37.2 bits (87), Expect = 0.003
 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 15/76 (19%)

Query: 184 LVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVR 243
           L  A   G + +V  L++ G D N  D         ALH          A  +  + +V+
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTDT------ALHL---------AARNGNLEIVK 45

Query: 244 LLLQAGVKMDIKVRMG 259
           LLL+ G  ++ K + G
Sbjct: 46  LLLEHGADVNAKDKDG 61

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 36.1 bits (84), Expect = 0.003
 Identities = 17/46 (36%), Positives = 23/46 (50%)

Query: 587 GYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGN 632
           G T L  AA SG   + + L+  G   +  +    TAL +A ENGN
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGN 46

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 36.2 bits (84), Expect = 0.003
 Identities = 19/41 (46%), Positives = 23/41 (56%)

Query: 554 GFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLA 594
           G   LH AAK G  +LV  L+    D+N  D+DG T L LA
Sbjct: 16  GNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 40.3 bits (94), Expect = 0.003
 Identities = 64/344 (18%), Positives = 120/344 (34%), Gaps = 60/344 (17%)

Query: 180 SVHALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQI 239
           +   L+ A   G   +V+  IK G D N I+     +  P        + L+ A+     
Sbjct: 35  TTTPLIDAIRSGDAKIVELFIKHGADINHIN-----TKIP--------HPLLTAIKIGAH 81

Query: 240 SVVRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILH 299
            +++LL+  GV   I                L +        CI    ++     G    
Sbjct: 82  DIIKLLIDNGVDTSI----------------LPIP-------CIEKDMIKTILDCG---- 114

Query: 300 MLFQHISPNILH-NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAA 358
                I  NI     +T +H+AI   +  ++++L     D    V         PIH+A 
Sbjct: 115 -----IDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGAD----VNIEDDNGCYPIHIAI 165

Query: 359 RLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQC 418
           +     I++ L+  G   N +   GE+     A Y    C+K L   G      +   +C
Sbjct: 166 KHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGN-----HIMNKC 220

Query: 419 ANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQAN-DVDALKKLIEWAD 477
            N         +   ++ ++ + +   I   +    +PL        D+D +  L+ +  
Sbjct: 221 KNGFTPLHNAII-HNRSAIELLINNASINDQDIDGSTPLHHAINPPCDIDIIDILL-YHK 278

Query: 478 VDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGE 521
            D+  +D  G +   I  A  ++    ++    AN  L  +  +
Sbjct: 279 ADISIKDNKGEN--PIDTAFKYINKDPVIKDIIANAVLIKEADK 320

Length = 434

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 35.6 bits (83), Expect = 0.003
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 554 GFYALHRAAKRGDFDLVHTLVSRCYDVNASD 584
           G   LH AA+ G  ++V  L+    DVNA D
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 35.3 bits (82), Expect = 0.003
 Identities = 14/30 (46%), Positives = 20/30 (66%)

Query: 586 DGYTPLMLAAKSGHGSVCQLLISSGAKCDI 615
           DG TPL LAA++G+  V +LL+  GA  + 
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 39.9 bits (93), Expect = 0.004
 Identities = 62/256 (24%), Positives = 99/256 (38%), Gaps = 43/256 (16%)

Query: 297 ILHMLFQH---ISPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRP 353
           I  +L  +   I+    H G T +H+A    + R  ELLL+   +   P     KT   P
Sbjct: 149 ITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIP----DKTNNSP 204

Query: 354 IHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARY-KHEECLKFLASEGADLGLI 412
           +H A +  +  I+  L+  G + ++R   G T   I   Y K  + LK L   G D+   
Sbjct: 205 LHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVN-- 262

Query: 413 NYAGQCANSIAKSSRWTLGFQQAVVDSIRS----------GNIIQSSNASRFSPL-MFVT 461
                     AKS    LG   A+  SI+S          G  I S N+ + +PL   V 
Sbjct: 263 ----------AKSY--ILGL-TALHSSIKSERKLKLLLEYGADINSLNSYKLTPLSSAVK 309

Query: 462 QANDVDALKKLIE----WADVDLDEQDADGFSAAMIAAAAGHV-----EAFRLLLHAGAN 512
           Q   ++  + LI        +  D ++++GF   M    +        +     L+  A+
Sbjct: 310 QYLCINIGRILISNICLLKRIKPDIKNSEGFIDNMDCITSNKRLNQIKDKCEDELNRLAS 369

Query: 513 IKLQNKYGETAITLAE 528
           IK+ N Y        +
Sbjct: 370 IKITNTYSFDDFLKCD 385

Length = 477

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	758
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.98
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.97
PHA02795	437	ankyrin-like protein; Provisional	99.97
PHA02795	437	ankyrin-like protein; Provisional	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.96
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.96
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.94
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.92
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.92
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.92
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.92
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.91
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.91
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.9
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.89
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.89
KOG0514	452	consensus Ankyrin repeat protein [General function	99.88
PHA02743	166	Viral ankyrin protein; Provisional	99.87
PHA02743	166	Viral ankyrin protein; Provisional	99.87
KOG0514	452	consensus Ankyrin repeat protein [General function	99.86
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.85
PHA02741	169	hypothetical protein; Provisional	99.84
PHA02736	154	Viral ankyrin protein; Provisional	99.82
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.82
PHA02741	169	hypothetical protein; Provisional	99.82
PHA02884	300	ankyrin repeat protein; Provisional	99.81
PHA02736	154	Viral ankyrin protein; Provisional	99.8
PHA02884	300	ankyrin repeat protein; Provisional	99.79
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.78
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.74
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.72
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.71
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.7
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.68
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.63
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.63
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.6
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.59
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.51
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.5
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.44
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.43
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.42
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.4
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.38
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.32
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.32
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.29
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.27
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.25
PF13606	30	Ank_3: Ankyrin repeat	98.89
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.84
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.82
PF13606	30	Ank_3: Ankyrin repeat	98.81
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.75
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.72
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.63
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.63
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.6
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.54
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.53
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.48
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.46
KOG0522	560	consensus Ankyrin repeat protein [General function	98.42
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.39
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.38
KOG0522	560	consensus Ankyrin repeat protein [General function	98.3
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.21
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.2
KOG2384	223	consensus Major histocompatibility complex protein	98.18
KOG0511	516	consensus Ankyrin repeat protein [General function	98.12
KOG2384	223	consensus Major histocompatibility complex protein	98.0
KOG0511	516	consensus Ankyrin repeat protein [General function	97.98
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.86
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.81
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.69
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.86
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.82
KOG2505	591	consensus Ankyrin repeat protein [General function	96.78
PLN03218	1060	maturation of RBCL 1; Provisional	96.72
KOG2505	591	consensus Ankyrin repeat protein [General function	96.7
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.7
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.33
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.22
PLN03218	1060	maturation of RBCL 1; Provisional	95.89
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	95.88
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.57
PLN03077	857	Protein ECB2; Provisional	94.32
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	93.07
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	92.55
PLN03077	857	Protein ECB2; Provisional	91.7
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	89.25

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=6.2e-63  Score=546.42  Aligned_cols=573  Identities=25%  Similarity=0.297  Sum_probs=449.8

Q ss_pred             cccchhHHH-HHHHHHcCCHHHHHhhhcCCCCCcccccceeeccccceeeecccccchhhhhhhcccCCchHHHHHHHcC
Q 035705           22 DYEAEVSQR-LVDAAHVNDVKRANECIGDPFVDVNFVGTVSLRAKKTELVLHDEAAHEVRVVYEEFKTEVTALFLAAHAG  100 (758)
Q Consensus        22 ~~~~~~~~~-L~~A~~~G~~~~v~~LL~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g  100 (758)
                      .++..+..+ |+.|+++|+.+.+..|++.. ...+..                            .+.|.||||+|+-.|
T Consensus        15 ~~~~~~~~~~l~~a~r~~~~~~~~~l~~~e-~~~~~~----------------------------sk~~~~pl~~aa~~~   65 (1143)
T KOG4177|consen   15 ENDVKGRLPALHIAARNDDTNAAKLLLQNE-HNADVD----------------------------SKSGFTPLHIAAHYG   65 (1143)
T ss_pred             ccCccccchHHHHHHhccchhhcccccccc-cccchh----------------------------cccccCHHHHHhhhh
Confidence            344444443 89999999999999999875 332221                            235556666666666


Q ss_pred             cHHHHHHHHhCCCCCCcccccCcch-hHHhhhChHHHHHHHHhcCCCccc----cchHHHHHHHcCChhHHHHHHhccC-
Q 035705          101 NLTLVRKLLSLGANVNQKLFRGYAT-TAAVREDHLEILDLLIKAGACQEA----CEEALLETSYLGQARPAELLMATDL-  174 (758)
Q Consensus       101 ~~~iv~~Ll~~ga~~~~~~~~g~~l-~~A~~~g~~~iv~~Ll~~ga~~~~----~~~~l~~A~~~g~~~iv~~Ll~~~~-  174 (758)
                      +.+++++|++.|+.++....+|.++ |.|++.|+.+++++|+..|+.++.    +.||||.|+..|+.+++++|+..+. 
T Consensus        66 ~~~v~~~ll~~~a~v~~~~~~~~~plh~a~~~~~a~~v~~ll~~ga~~~~~~~~~lTpLh~aa~~g~~~~~~~ll~~~a~  145 (1143)
T KOG4177|consen   66 NENVAELLLNRGAIVNATARNGITPLHVASKRGDAEMVKLLLCRGAQIDARDRDGLTPLHCAARKGHVQVIELLLQHGAP  145 (1143)
T ss_pred             hhhhhhhhhccccccCcccccCccHHHHHHhhcchhHHHHHHhccCchhhcccCCCcchhhhcccccHHHHHHHHHccCC
Confidence            6666666666666666666666543 666666666666666666665544    3466666666666666666665543 


Q ss_pred             --CCCCCCchH-----------------------HHHHHhcCCHHHHHHHHhCCCCCCcchhhhhhccccccccCCCCch
Q 035705          175 --IRPQVSVHA-----------------------LVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNA  229 (758)
Q Consensus       175 --~~~~~~~t~-----------------------L~~A~~~g~~~iv~~Ll~~g~d~~~~~~~~~~~~~~~~~~~~~~t~  229 (758)
                        .++..|.||                       ++.|...++.+++++|++..++.+..+             ..+.||
T Consensus       146 ~~~k~~~g~t~l~~a~~~~~~~ll~~~~~~d~l~~~~~~~~~~~~~~~ll~~~~~~~~a~~-------------~~~~tp  212 (1143)
T KOG4177|consen  146 INIKTKNGLSPLHMAAQVACARLLLEYKAPDYLRLHVAAHCGHARVAKLLLDKKADPNASA-------------LNGFTP  212 (1143)
T ss_pred             CcccccCCCCchhhhcchhhhHHhhhcccchhhhhhHHhhcchHHHHhhhhcccCCccccc-------------cCCCCc
Confidence              223333333                       355556666777777777777776666             457888


Q ss_pred             hHHHHhcCCHHHHHHHHHcCCCCccccccCccccccccchhhhhhccccccccccchhhhhhhchHHHHHHHhhc-cCCC
Q 035705          230 LVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQH-ISPN  308 (758)
Q Consensus       230 L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~  308 (758)
                      +|.|+..+.++++++++.+|+++...+..|.++++.+                       .+.+..+++.+++++ ..++
T Consensus       213 l~~a~~~nri~~~eLll~~gadv~a~d~~gl~~lh~a-----------------------~~~g~~~i~~~l~~~ga~~~  269 (1143)
T KOG4177|consen  213 LHIACKKNRIKVVELLLKHGADVSAKDESGLTPLHVA-----------------------AFMGHLDIVKLLLQHGASVN  269 (1143)
T ss_pred             hhhhccccccceeeeeeeccCcCCcccccCccHHHHH-----------------------HhccchhHHHHHHhcccccC
Confidence            8888888888888888888888888877776665553                       344566777777777 3333


Q ss_pred             -CCCCCchHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHH
Q 035705          309 -ILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAA  387 (758)
Q Consensus       309 -~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L  387 (758)
                       .+..|.||+|.|+..+..+++++|+++|+++..    .+....||+|.|...|..++++++++.++.++..+..|.|||
T Consensus       270 ~~~vr~~tplh~AA~~~~~e~~~~ll~~ga~~~~----~~~~~kt~l~~a~~~g~~~i~~~~l~~~~~~~aar~~g~t~l  345 (1143)
T KOG4177|consen  270 VSTVRGETPLHMAARAGQVEVCKLLLQNGADVLA----KARDDQTPLHIASRLGHEEIVHLLLQAGATPNAARTAGYTPL  345 (1143)
T ss_pred             cccccccCcchhhhccchhhhHhhhhccCccccc----ccccccChhhhhcccchHHHHHHHhhccCCccccCcCCcccc
Confidence             477888999999999999999999999988876    677888899999999999999999999999998888899999


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHH
Q 035705          388 MICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVD  467 (758)
Q Consensus       388 ~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~  467 (758)
                      |+++..++.+++.+|...+..-...+..+.+|+|.|    ...+..++++.+++.|.+++.....|.||||.++..++..
T Consensus       346 Hlaa~~~~~~~~~~l~~~~~~~~~a~~k~~~pl~la----~~~g~~~~v~Lll~~ga~~~~~gk~gvTplh~aa~~~~~~  421 (1143)
T KOG4177|consen  346 HLAAKEGQVEVAGALLEHGAQRRQAEEKGFTPLHLA----VKSGRVSVVELLLEAGADPNSAGKNGVTPLHVAAHYGNPR  421 (1143)
T ss_pred             cHhhhhhhHHHHHHhhccccccCcccccCCcchhhh----cccCchhHHHhhhhccCCcccCCCCCcceeeehhhccCcc
Confidence            999999988888888888888888888889999998    5567888999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCcccCCCCCcHHHHHHHcC-CHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccc
Q 035705          468 ALKKLIEWADVDLDEQDADGFSAAMIAAAAG-HVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALE  546 (758)
Q Consensus       468 ~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~  546 (758)
                      +++.++++ +++++..+..|.||+|+|+..| ..++...+++.|++++.....|.||||+|+..|+.+++..++ .....
T Consensus       422 ~v~l~l~~-gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~lll-e~~~~  499 (1143)
T KOG4177|consen  422 VVKLLLKR-GASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLL-EGGAN  499 (1143)
T ss_pred             eEEEEecc-CCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhh-hcCCc
Confidence            99999997 7899999999999999999998 888888888999999999999999999999999999887444 44466


Q ss_pred             cCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHH
Q 035705          547 EGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALAL  626 (758)
Q Consensus       547 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~  626 (758)
                      .+.....|.|++|.|...+...+++.++++|++++.++..|.||||.|+.+|+.++|++||++|||++.+++.|+||||.
T Consensus       500 ~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~  579 (1143)
T KOG4177|consen  500 DNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQ  579 (1143)
T ss_pred             cCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhH
Confidence            67777788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHCCChhhHHHHHHHHHHHHHHhCCCccccccccCCCcchHHHHHHhcccC
Q 035705          627 ARENGNGNEAENVILDELALTLVLDGTYVKKHTKCGKGSPHVKLLKMWGKSR  678 (758)
Q Consensus       627 A~~~~~~~~~~~ll~~~~~~~L~~~g~~~~~~d~~g~t~l~~a~~~~~~~~~  678 (758)
                      |+..|+.+         ++.+|+++|+++|..|.+|.|||++|+...+....
T Consensus       580 Aa~~G~~~---------i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~  622 (1143)
T KOG4177|consen  580 AAQQGHND---------IAELLLKHGASVNAADLDGFTPLHIAVRLGYLSVV  622 (1143)
T ss_pred             HHHcChHH---------HHHHHHHcCCCCCcccccCcchhHHHHHhcccchh
Confidence            99999775         56688899999999999999999998876654443

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=1.1e-61  Score=536.50  Aligned_cols=560  Identities=25%  Similarity=0.338  Sum_probs=510.6

Q ss_pred             hhHHHHHHHHHcCCHHHHHhhhcCCCCCcccccceeeccccceeeecccccchhhhhhhcccCCchHHHHHHHcCcHHHH
Q 035705           26 EVSQRLVDAAHVNDVKRANECIGDPFVDVNFVGTVSLRAKKTELVLHDEAAHEVRVVYEEFKTEVTALFLAAHAGNLTLV  105 (758)
Q Consensus        26 ~~~~~L~~A~~~G~~~~v~~LL~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv  105 (758)
                      .+.|++|.|+-.|+.++++.|+..+ ..++..                            ..+|.||||.|++.|+.++|
T Consensus        53 ~~~~pl~~aa~~~~~~v~~~ll~~~-a~v~~~----------------------------~~~~~~plh~a~~~~~a~~v  103 (1143)
T KOG4177|consen   53 SGFTPLHIAAHYGNENVAELLLNRG-AIVNAT----------------------------ARNGITPLHVASKRGDAEMV  103 (1143)
T ss_pred             cccCHHHHHhhhhhhhhhhhhhccc-cccCcc----------------------------cccCccHHHHHHhhcchhHH
Confidence            6789999999999999999999997 676654                            58899999999999999999


Q ss_pred             HHHHhCCCCCCcccccCcch-hHHhhhChHHHHHHHHhcCCCccc----cchH-----------------------HHHH
Q 035705          106 RKLLSLGANVNQKLFRGYAT-TAAVREDHLEILDLLIKAGACQEA----CEEA-----------------------LLET  157 (758)
Q Consensus       106 ~~Ll~~ga~~~~~~~~g~~l-~~A~~~g~~~iv~~Ll~~ga~~~~----~~~~-----------------------l~~A  157 (758)
                      +.|+..|+.++.++..|.|+ |.|+..|+.+++++|+.++++++.    +.++                       ++.|
T Consensus       104 ~~ll~~ga~~~~~~~~~lTpLh~aa~~g~~~~~~~ll~~~a~~~~k~~~g~t~l~~a~~~~~~~ll~~~~~~d~l~~~~~  183 (1143)
T KOG4177|consen  104 KLLLCRGAQIDARDRDGLTPLHCAARKGHVQVIELLLQHGAPINIKTKNGLSPLHMAAQVACARLLLEYKAPDYLRLHVA  183 (1143)
T ss_pred             HHHHhccCchhhcccCCCcchhhhcccccHHHHHHHHHccCCCcccccCCCCchhhhcchhhhHHhhhcccchhhhhhHH
Confidence            99999999999999999875 999999999999999999987754    2222                       3667


Q ss_pred             HHcCChhHHHHHHhccC---CCCCCCchHHHHHHhcCCHHHHHHHHhCCCCCCcchhhhhhccccccccCCCCchhHHHH
Q 035705          158 SYLGQARPAELLMATDL---IRPQVSVHALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAV  234 (758)
Q Consensus       158 ~~~g~~~iv~~Ll~~~~---~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~d~~~~~~~~~~~~~~~~~~~~~~t~L~~A~  234 (758)
                      ...++.++++++.....   ..+..+.||+|.||..+.++++++++.+|+++...+             ..|.||||.|+
T Consensus       184 ~~~~~~~~~~ll~~~~~~~~a~~~~~~tpl~~a~~~nri~~~eLll~~gadv~a~d-------------~~gl~~lh~a~  250 (1143)
T KOG4177|consen  184 AHCGHARVAKLLLDKKADPNASALNGFTPLHIACKKNRIKVVELLLKHGADVSAKD-------------ESGLTPLHVAA  250 (1143)
T ss_pred             hhcchHHHHhhhhcccCCccccccCCCCchhhhccccccceeeeeeeccCcCCccc-------------ccCccHHHHHH
Confidence            77888999999987654   455678999999999999999999999999999999             45999999999


Q ss_pred             hcCCHHHHHHHHHcCCCCccccccCccccccccchhhhhhccccccccccchhhhhhhchHHHHHHHhhc-cCCC-CCCC
Q 035705          235 VSRQISVVRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQH-ISPN-ILHN  312 (758)
Q Consensus       235 ~~g~~~iv~~Ll~~ga~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~-~~~~  312 (758)
                      ..|+.+++++|+.+|+.++..+..+.++++.+..                       ....++.++++++ .++. ....
T Consensus       251 ~~g~~~i~~~l~~~ga~~~~~~vr~~tplh~AA~-----------------------~~~~e~~~~ll~~ga~~~~~~~~  307 (1143)
T KOG4177|consen  251 FMGHLDIVKLLLQHGASVNVSTVRGETPLHMAAR-----------------------AGQVEVCKLLLQNGADVLAKARD  307 (1143)
T ss_pred             hccchhHHHHHHhcccccCcccccccCcchhhhc-----------------------cchhhhHhhhhccCccccccccc
Confidence            9999999999999999999999999998888542                       3455778888888 4443 4678


Q ss_pred             CchHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 035705          313 GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICAR  392 (758)
Q Consensus       313 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  392 (758)
                      ..||+|.|...|..++++++++.++.++.    .+..|.||||+++..++.++..+|...+.+-...+..+.||+|.|+.
T Consensus       308 ~kt~l~~a~~~g~~~i~~~~l~~~~~~~a----ar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~~~pl~la~~  383 (1143)
T KOG4177|consen  308 DQTPLHIASRLGHEEIVHLLLQAGATPNA----ARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQAEEKGFTPLHLAVK  383 (1143)
T ss_pred             ccChhhhhcccchHHHHHHHhhccCCccc----cCcCCcccccHhhhhhhHHHHHHhhccccccCcccccCCcchhhhcc
Confidence            89999999999999999999999999887    68899999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcC-CHHHHHH
Q 035705          393 YKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQAN-DVDALKK  471 (758)
Q Consensus       393 ~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~-~~~~v~~  471 (758)
                      .|..+++++++++|++++.....|.||+|.+    ...+..++++.+++.|++.+..+..|+||+|.|+..| ..+....
T Consensus       384 ~g~~~~v~Lll~~ga~~~~~gk~gvTplh~a----a~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~  459 (1143)
T KOG4177|consen  384 SGRVSVVELLLEAGADPNSAGKNGVTPLHVA----AHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARL  459 (1143)
T ss_pred             cCchhHHHhhhhccCCcccCCCCCcceeeeh----hhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhh
Confidence            9999999999999999999999999999999    5567889999999999999999999999999999999 7777777


Q ss_pred             HHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCC
Q 035705          472 LIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKG  551 (758)
Q Consensus       472 Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~  551 (758)
                      +++. +.++|.....|.||||.|+..|+.++++.|++.++..+.....+.+++|.+...+...+++ .+...+..++.++
T Consensus       460 l~~~-g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~-~l~~~ga~v~~~~  537 (1143)
T KOG4177|consen  460 LLQY-GADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAK-ILLEHGANVDLRT  537 (1143)
T ss_pred             Hhhc-CCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHH-HHhhcCCceehhc
Confidence            7776 8999999999999999999999999999999999999999999999999999999999887 5567889999999


Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCC
Q 035705          552 SAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENG  631 (758)
Q Consensus       552 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~  631 (758)
                      ..|.||||.|+..|+.++|++||++|+|++.+|+.|+||||.|+..|+.+|+.+|+++||++|..|.+|.|||++|++.|
T Consensus       538 ~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg  617 (1143)
T KOG4177|consen  538 GRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVRLG  617 (1143)
T ss_pred             ccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHHHhCCCc-----cccccccCCCcchHH
Q 035705          632 NGNEAENVILDELALTLVLDGTY-----VKKHTKCGKGSPHVK  669 (758)
Q Consensus       632 ~~~~~~~ll~~~~~~~L~~~g~~-----~~~~d~~g~t~l~~a  669 (758)
                      +.+         ++++|+..|++     ....+..|.+|..++
T Consensus       618 ~~~---------~~k~l~~~~~~~~~~~~~~e~~~g~~p~~v~  651 (1143)
T KOG4177|consen  618 YLS---------VVKLLKVVTATPAATDPVKENRKGAVPEDVA  651 (1143)
T ss_pred             ccc---------hhhHHHhccCccccccchhhhhcccChhhHH
Confidence            997         55677778888     788888999998765

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.1e-55  Score=499.58  Aligned_cols=448  Identities=16%  Similarity=0.162  Sum_probs=377.4

Q ss_pred             ccCCchHHHHHHHcCcHHHHHHHHhCCCC-CCcccccCcch-hHHhhhChHHHHHHHHhcCCCc--cccchHHHHHHHcC
Q 035705           86 FKTEVTALFLAAHAGNLTLVRKLLSLGAN-VNQKLFRGYAT-TAAVREDHLEILDLLIKAGACQ--EACEEALLETSYLG  161 (758)
Q Consensus        86 ~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~-~~~~~~~g~~l-~~A~~~g~~~iv~~Ll~~ga~~--~~~~~~l~~A~~~g  161 (758)
                      +..+.||||.|+..||.++|+.|++.+.+ ++..|..|.|| |+|+..++..-+...+..+++.  +.+.+.+..+....
T Consensus        38 ~~~~~t~LH~A~~~g~~e~V~~ll~~~~~~~~~~~~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  117 (682)
T PHA02876         38 ESIPFTAIHQALQLRQIDIVEEIIQQNPELIYITDHKCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYASIILNKHKL  117 (682)
T ss_pred             ccccchHHHHHHHHHhhhHHHHHHHhCcccchhhchhhccccccccCCCCccccccccccchhhcccccHHHHHHHHHHH
Confidence            35689999999999999999999998777 45667778865 9999888743222222233322  11223332222222


Q ss_pred             ChhHHHHHHhc---cC------CCCCCCchHHHHHHhcCCHHHHHHHHhCCCCCCcchhhhhhccccccccCCCCchhHH
Q 035705          162 QARPAELLMAT---DL------IRPQVSVHALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVG  232 (758)
Q Consensus       162 ~~~iv~~Ll~~---~~------~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~d~~~~~~~~~~~~~~~~~~~~~~t~L~~  232 (758)
                      ...+++.|.+.   ..      .......++|+.|+..|+.+++++|+++|+++|..+             ..|.||||+
T Consensus       118 ~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~~Gadvn~~d-------------~~G~TpLh~  184 (682)
T PHA02876        118 DEACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLEGGADVNAKD-------------IYCITPIHY  184 (682)
T ss_pred             HHHHHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHhCCCCCCCCC-------------CCCCCHHHH
Confidence            22223333221   11      112224678999999999999999999999999998             469999999


Q ss_pred             HHhcCCHHHHHHHHHcCCCCccccccCccccccccchhhhhhccccccccccchhhhhhhchHHHHHHHhhccCCCCCCC
Q 035705          233 AVVSRQISVVRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHN  312 (758)
Q Consensus       233 A~~~g~~~iv~~Ll~~ga~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  312 (758)
                      |+..|+.++|++|+++|++++..                                                      +..
T Consensus       185 Aa~~G~~~iv~~LL~~Gad~n~~------------------------------------------------------~~~  210 (682)
T PHA02876        185 AAERGNAKMVNLLLSYGADVNII------------------------------------------------------ALD  210 (682)
T ss_pred             HHHCCCHHHHHHHHHCCCCcCcc------------------------------------------------------CCC
Confidence            99999999999999999999875                                                      346


Q ss_pred             CchHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 035705          313 GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICAR  392 (758)
Q Consensus       313 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  392 (758)
                      |.||||.|+..|+.+++++|++.+.+++        .+.++|+.|+..++.+++++|++.|++++..+..|.||||+|+.
T Consensus       211 g~t~L~~A~~~~~~~ivk~Ll~~~~~~~--------~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~  282 (682)
T PHA02876        211 DLSVLECAVDSKNIDTIKAIIDNRSNIN--------KNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQ  282 (682)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCCCCC--------CCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHh
Confidence            7899999999999999999999887654        34579999999999999999999999999999999999999999


Q ss_pred             cCCH-HHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHc-CCHHHHH
Q 035705          393 YKHE-ECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQA-NDVDALK  470 (758)
Q Consensus       393 ~g~~-~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~-~~~~~v~  470 (758)
                      .++. +++++|++.|++++..|..|.||||+|+..+   ...++++.|+..|++++..+..|.||||+|+.. ++.++++
T Consensus       283 ~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g---~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~  359 (682)
T PHA02876        283 APSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNG---YDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVI  359 (682)
T ss_pred             CCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhC---CCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHH
Confidence            9986 6999999999999999999999999997643   247899999999999999999999999999986 4688888


Q ss_pred             HHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCC
Q 035705          471 KLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQK  550 (758)
Q Consensus       471 ~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~  550 (758)
                      .|++. |++++.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++...+..+|.+.+.+++..
T Consensus       360 lLl~~-gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~  438 (682)
T PHA02876        360 TLLEL-GANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSK  438 (682)
T ss_pred             HHHHc-CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcC
Confidence            88887 89999999999999999999999999999999999999999999999999998777655444666788999999


Q ss_pred             CCCCchHHHHHHHcC-CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCC
Q 035705          551 GSAGFYALHRAAKRG-DFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCD  614 (758)
Q Consensus       551 ~~~g~t~L~~A~~~g-~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~  614 (758)
                      |..|+||||+|+..| +.+++++|+++|+++|.+|..|.|||++|+..+  ++++.|+.+|+++.
T Consensus       439 d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~~g~tpl~~a~~~~--~~v~~Ll~~~a~~~  501 (682)
T PHA02876        439 NKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIALEYH--GIVNILLHYGAELR  501 (682)
T ss_pred             CCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhC--CHHHHHHHCCCCCC
Confidence            999999999999977 789999999999999999999999999999865  58999999999875

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=9.6e-55  Score=496.58  Aligned_cols=477  Identities=19%  Similarity=0.247  Sum_probs=385.7

Q ss_pred             HHHHHHHcCcH-HHHHH-----HHhCCCCCCcccccCcch-hHHhhhChHHHHHHHHhcCCCc-----cccchHHHHHHH
Q 035705           92 ALFLAAHAGNL-TLVRK-----LLSLGANVNQKLFRGYAT-TAAVREDHLEILDLLIKAGACQ-----EACEEALLETSY  159 (758)
Q Consensus        92 ~L~~A~~~g~~-~iv~~-----Ll~~ga~~~~~~~~g~~l-~~A~~~g~~~iv~~Ll~~ga~~-----~~~~~~l~~A~~  159 (758)
                      -|+.|+..|.. ++...     |+.+|++....+..+.|+ |.|+..||.++|+.|++++.+.     ..+.||||.|+.
T Consensus         5 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~LH~A~~~g~~e~V~~ll~~~~~~~~~~~~~~~tpLh~a~~   84 (682)
T PHA02876          5 DLYRIMCRGNCIDILSAIDNYDLHKHGANQCENESIPFTAIHQALQLRQIDIVEEIIQQNPELIYITDHKCHSTLHTICI   84 (682)
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHhhhHHHHHHHhCcccchhhchhhccccccccC
Confidence            36677777766 33322     445688887777777764 9999999999999999988663     237789999888


Q ss_pred             cCChhHHHHHHhccC---CCCCCCchHHHHHHhcCCHHHHHHHHh--CCCCCCcchhhhhhccccccccCCCCchhHHHH
Q 035705          160 LGQARPAELLMATDL---IRPQVSVHALVSACFRGFVNVVDTLIK--CGVDANAIDRVLLQSSKPALHANFDCNALVGAV  234 (758)
Q Consensus       160 ~g~~~iv~~Ll~~~~---~~~~~~~t~L~~A~~~g~~~iv~~Ll~--~g~d~~~~~~~~~~~~~~~~~~~~~~t~L~~A~  234 (758)
                      .++.  +..++.-..   .....+.+.+..+-.......++.|-+  .|.++......         ......++++.|+
T Consensus        85 ~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~---------~~~~~~~~l~~~i  153 (682)
T PHA02876         85 IPNV--MDIVISLTLDCDIILDIKYASIILNKHKLDEACIHILKEAISGNDIHYDKIN---------ESIEYMKLIKERI  153 (682)
T ss_pred             CCCc--cccccccccchhhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHhhc---------cchhhhHHHHHHH
Confidence            8763  222222111   112233444443433333333333332  23333221100         0023568899999


Q ss_pred             hcCCHHHHHHHHHcCCCCccccccCccccccccchhhhhhccccccccccchhhhhhhchHHHHHHHhhccCCCCCCCCc
Q 035705          235 VSRQISVVRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGR  314 (758)
Q Consensus       235 ~~g~~~iv~~Ll~~ga~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~g~  314 (758)
                      ..|+.+++++|+++|++++.+                                                      +..|.
T Consensus       154 ~~~~~~i~k~Ll~~Gadvn~~------------------------------------------------------d~~G~  179 (682)
T PHA02876        154 QQDELLIAEMLLEGGADVNAK------------------------------------------------------DIYCI  179 (682)
T ss_pred             HCCcHHHHHHHHhCCCCCCCC------------------------------------------------------CCCCC
Confidence            999999999999999999976                                                      34688


Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 035705          315 TLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYK  394 (758)
Q Consensus       315 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g  394 (758)
                      ||||+|+..|+.++|++|+++|++++.    .+..|.||||+|+..|+.+++++|++.+.+++.    +.++|+.|+..+
T Consensus       180 TpLh~Aa~~G~~~iv~~LL~~Gad~n~----~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~----~~~~L~~ai~~~  251 (682)
T PHA02876        180 TPIHYAAERGNAKMVNLLLSYGADVNI----IALDDLSVLECAVDSKNIDTIKAIIDNRSNINK----NDLSLLKAIRNE  251 (682)
T ss_pred             CHHHHHHHCCCHHHHHHHHHCCCCcCc----cCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCC----CcHHHHHHHHcC
Confidence            999999999999999999999999876    678899999999999999999999999887754    457999999999


Q ss_pred             CHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcC-CHHHHHHHH
Q 035705          395 HEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQAN-DVDALKKLI  473 (758)
Q Consensus       395 ~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~-~~~~v~~Ll  473 (758)
                      +.+++++|++.|++++..+..|.||||+|+..+   ...++++.|++.|++++..+..|.||||+|+..| ..++++.|+
T Consensus       252 ~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~---~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll  328 (682)
T PHA02876        252 DLETSLLLYDAGFSVNSIDDCKNTPLHHASQAP---SLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLI  328 (682)
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCC---CHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHH
Confidence            999999999999999999999999999997543   3457899999999999999999999999999999 589999999


Q ss_pred             HhcCCCCcccCCCCCcHHHHHHHc-CCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCC
Q 035705          474 EWADVDLDEQDADGFSAAMIAAAA-GHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGS  552 (758)
Q Consensus       474 ~~~~~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~  552 (758)
                      .. |++++..+..|.||||+|+.. ++.+++++|++.|++++.+|..|.||||+|+..|+.++++.|+ +.+.+++..+.
T Consensus       329 ~~-gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll-~~gad~~~~~~  406 (682)
T PHA02876        329 ML-GADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLL-DYGADIEALSQ  406 (682)
T ss_pred             Hc-CCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCccccCC
Confidence            98 899999999999999999985 5788999999999999999999999999999999999999776 56788888999


Q ss_pred             CCchHHHHHHHcCC-HHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcC-cHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHC
Q 035705          553 AGFYALHRAAKRGD-FDLVHTLVSRCYDVNASDADGYTPLMLAAKSG-HGSVCQLLISSGAKCDIENARNETALALAREN  630 (758)
Q Consensus       553 ~g~t~L~~A~~~g~-~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~-~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~  630 (758)
                      .|.||||+|+..++ ..++++|+++|+++|.+|..|+||||+|+..+ +.+++++|+++|+|++.+|..|.|||++|+.+
T Consensus       407 ~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~~g~tpl~~a~~~  486 (682)
T PHA02876        407 KIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIALEY  486 (682)
T ss_pred             CCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHh
Confidence            99999999987665 56799999999999999999999999999876 68999999999999999999999999999976


Q ss_pred             CChhhHHHHHHHHHHHHHHhCCCcccc
Q 035705          631 GNGNEAENVILDELALTLVLDGTYVKK  657 (758)
Q Consensus       631 ~~~~~~~~ll~~~~~~~L~~~g~~~~~  657 (758)
                      +.           +++.|+..|+++..
T Consensus       487 ~~-----------~v~~Ll~~~a~~~~  502 (682)
T PHA02876        487 HG-----------IVNILLHYGAELRD  502 (682)
T ss_pred             CC-----------HHHHHHHCCCCCCc
Confidence            52           45678888888663

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.4e-54  Score=476.26  Aligned_cols=445  Identities=15%  Similarity=0.151  Sum_probs=333.6

Q ss_pred             ccCCchHHHHHHHc---CcHHHHHHHHhCCCCCCcccccCcch-hHHhhhChHH----HHHHHHhcCCCccccchHHHHH
Q 035705           86 FKTEVTALFLAAHA---GNLTLVRKLLSLGANVNQKLFRGYAT-TAAVREDHLE----ILDLLIKAGACQEACEEALLET  157 (758)
Q Consensus        86 ~~~g~t~L~~A~~~---g~~~iv~~Ll~~ga~~~~~~~~g~~l-~~A~~~g~~~----iv~~Ll~~ga~~~~~~~~l~~A  157 (758)
                      |.+|+||||+|+..   |+.++|++|+++|++++..+..|.|+ |+|+..|+.+    ++++|++.+...+.        
T Consensus        29 d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~--------  100 (661)
T PHA02917         29 NQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNI--------  100 (661)
T ss_pred             CCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCC--------
Confidence            68999999998655   88999999999999999999999875 9999999854    55777776433221        


Q ss_pred             HHcCChhHHHHHHhccCCCCCCCchHHHHHHhcCCHHHHHHHHhCCCCCCcchhhhhhccccccccCCCCchhHHH--Hh
Q 035705          158 SYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGA--VV  235 (758)
Q Consensus       158 ~~~g~~~iv~~Ll~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~d~~~~~~~~~~~~~~~~~~~~~~t~L~~A--~~  235 (758)
                                          ....++++.|+..|+.++|++|+++|+|+|..+             ..|.|||+.|  +.
T Consensus       101 --------------------~~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d-------------~~g~T~L~~~~a~~  147 (661)
T PHA02917        101 --------------------NDFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKC-------------ENHRSVIENYVMTD  147 (661)
T ss_pred             --------------------CCcchHHHHHhhcCCHHHHHHHHHcCCCCCccC-------------CCCccHHHHHHHcc
Confidence                                112356788999999999999999999999998             4599999965  45


Q ss_pred             cCCHHHHHHHHHcCCCCccccccCccccccccchhhhhhccccccccccchhhhhhhchHHHHHHHhhccCCCCCCCCch
Q 035705          236 SRQISVVRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRT  315 (758)
Q Consensus       236 ~g~~~iv~~Ll~~ga~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~g~t  315 (758)
                      .|+.++|++|+++|++++.++..+...+...                                        ......+.|
T Consensus       148 ~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~----------------------------------------~~~~~~~~t  187 (661)
T PHA02917        148 DPVPEIIDLFIENGCSVLYEDEDDEYGYAYD----------------------------------------DYQPRNCGT  187 (661)
T ss_pred             CCCHHHHHHHHHcCCCccccccccccccccc----------------------------------------ccccccccc
Confidence            7899999999999999987654321110000                                        001345679


Q ss_pred             HHHHHHH-----------cCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCH--HHHHHHHHcCCCCC----C
Q 035705          316 LIHHAIL-----------CNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSA--KILRRLISAGCNIN----S  378 (758)
Q Consensus       316 ~L~~A~~-----------~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~--~~v~~Ll~~g~~~~----~  378 (758)
                      |||+|+.           .++.++|++|++.|++++.    .+..|.||||+|+..|+.  ++|++|++ |++++    .
T Consensus       188 ~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~----~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~~  262 (661)
T PHA02917        188 VLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSS----IDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSYI  262 (661)
T ss_pred             HHHHHHhhcccccccccccCcHHHHHHHHHCCCCccc----CCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccccc
Confidence            9999986           4689999999999999886    789999999999999985  79999975 88775    4


Q ss_pred             CCCCCCcHHHHHHHc-------C--CHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHH-cCCCccc
Q 035705          379 RTAAGETAAMICARY-------K--HEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIR-SGNIIQS  448 (758)
Q Consensus       379 ~~~~g~t~L~~A~~~-------g--~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~-~g~~~~~  448 (758)
                      .|..+.+|+++|+.-       +  +.+++++|++.|++.      +.++++++    ...+..+++.+++. .+.++  
T Consensus       263 ~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--  330 (661)
T PHA02917        263 DDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPH------GIMCSIVP----LWRNDKETISLILKTMNSDV--  330 (661)
T ss_pred             cCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCC------ceeEeeec----ccccchHHHHHHHHHhchHH--
Confidence            566788899999842       1  779999999999862      44455555    33456667776663 33332  


Q ss_pred             CCCCCCcHHHHHHHcCC--HHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHh-CCCCCCcCCCCCCcHHH
Q 035705          449 SNASRFSPLMFVTQAND--VDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLH-AGANIKLQNKYGETAIT  525 (758)
Q Consensus       449 ~~~~~~t~L~~a~~~~~--~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~  525 (758)
                          -.+++..++..|.  .++++.|++. |++++.++..|.++.    ...+.+++++|+. .|++++..+..|+||||
T Consensus       331 ----~~~~l~~~~~~g~~~~~~v~~Ll~~-GAdvn~~~~~g~~~~----~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~  401 (661)
T PHA02917        331 ----LQHILIEYMTFGDIDIPLVECMLEY-GAVVNKEAIHGYFRN----INIDSYTMKYLLKKEGGDAVNHLDDGEIPIG  401 (661)
T ss_pred             ----HHHHHHHHHHcCCCcHHHHHHHHHc-CCCCCCCCccccchh----hcCCHHHHHHHHHhcCCCccccCCCCCChhH
Confidence                0122333444565  4588888887 788888888887754    3556777777776 57777666667888888


Q ss_pred             HHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHH
Q 035705          526 LAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQL  605 (758)
Q Consensus       526 ~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~  605 (758)
                      .|++.+......+         ......|.+...  ...+..+++++|+++|+|+|.+|..|+||||+|+..++.+++++
T Consensus       402 ~a~~~~~~~~~~~---------~~~~~~~~~~~~--~~~~~~~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~  470 (661)
T PHA02917        402 HLCKSNYGCYNFY---------TYTYKKGLCDMS--YACPILSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSL  470 (661)
T ss_pred             HHHHhcccchhhh---------hhhhhhccchhh--hhhhhHHHHHHHHHCCCCCCCCCCCCcCHHHHHHHcCCHHHHHH
Confidence            8876554322210         001112222222  22347889999999999999999999999999999999999999


Q ss_pred             HHhCCCCCCCCCCCCCcHHHHHHH-CCChhhHHHHHHHHHHHHHHhCCCcccc
Q 035705          606 LISSGAKCDIENARNETALALARE-NGNGNEAENVILDELALTLVLDGTYVKK  657 (758)
Q Consensus       606 Ll~~gad~~~~d~~g~t~L~~A~~-~~~~~~~~~ll~~~~~~~L~~~g~~~~~  657 (758)
                      |+++|+|++.+|..|+||||+|+. .++.+         ++++|+.+|++++.
T Consensus       471 Ll~~GAdin~~d~~G~T~L~~A~~~~~~~~---------iv~~LL~~ga~i~~  514 (661)
T PHA02917        471 LLESGSDVNIRSNNGYTCIAIAINESRNIE---------LLKMLLCHKPTLDC  514 (661)
T ss_pred             HHHCcCCCCCCCCCCCCHHHHHHHhCCCHH---------HHHHHHHcCCChhH
Confidence            999999999999999999999996 56665         66688888888763

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1e-49  Score=425.56  Aligned_cols=265  Identities=14%  Similarity=0.138  Sum_probs=178.0

Q ss_pred             CCchHHHHHHHcC--CHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 035705          312 NGRTLIHHAILCN--NARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMI  389 (758)
Q Consensus       312 ~g~t~L~~A~~~g--~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~  389 (758)
                      .|.||||+|+..+  ..+++++|+++|++++..   .+..|.|||| |+..|+.+++++|+++|++++.+|..|+||||+
T Consensus       104 ~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~---~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~  179 (446)
T PHA02946        104 QHKTPLYYLSGTDDEVIERINLLVQYGAKINNS---VDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHR  179 (446)
T ss_pred             CCCCHHHHHHHcCCchHHHHHHHHHcCCCcccc---cCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHH
Confidence            4445555555433  245555555555554421   2445555554 334455555555555555555555555555555


Q ss_pred             HHHcCC--HHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcC--C
Q 035705          390 CARYKH--EECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQAN--D  465 (758)
Q Consensus       390 A~~~g~--~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~--~  465 (758)
                      |+..++  .+++++|+++|++                                     ++..|..|.||||+|+..+  +
T Consensus       180 A~~~~~~~~~~v~~Ll~~Gad-------------------------------------in~~d~~G~TpLH~Aa~~~~~~  222 (446)
T PHA02946        180 HLMSDNPKASTISWMMKLGIS-------------------------------------PSKPDHDGNTPLHIVCSKTVKN  222 (446)
T ss_pred             HHHhcCCCHHHHHHHHHcCCC-------------------------------------CcccCCCCCCHHHHHHHcCCCc
Confidence            544332  3455555555554                                     4555555566777777765  6


Q ss_pred             HHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCC-HHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhc
Q 035705          466 VDALKKLIEWADVDLDEQDADGFSAAMIAAAAGH-VEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYA  544 (758)
Q Consensus       466 ~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~-~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~  544 (758)
                      .++++.|++  ++++|.+|..|.||||+|+..++ .+++++|+++|++++     ++| ++.|+..+..++++.+..+. 
T Consensus       223 ~~iv~lLl~--gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~-----~~~-~~~a~~~~~~~~~e~l~~~g-  293 (446)
T PHA02946        223 VDIINLLLP--STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVIT-----DQT-VNICIFYDRDDVLEIINDKG-  293 (446)
T ss_pred             HHHHHHHHc--CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCC-----CcH-HHHHHHcCchHHHHHHHHcC-
Confidence            788888774  68888888888888888888877 478888888886654     333 78888888888777655432 


Q ss_pred             cccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHH
Q 035705          545 LEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETAL  624 (758)
Q Consensus       545 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L  624 (758)
                            +..|.||||+|+..|+.++|++|+++|+       .|+||||+|+..++.+++++|+++|+++|.. ..|.|||
T Consensus       294 ------~~~~~TpLh~Aa~~g~~eivk~Ll~~~~-------~~~t~L~~A~~~~~~~~v~~Ll~~ga~~n~~-~~G~t~l  359 (446)
T PHA02946        294 ------KQYDSTDFKMAVEVGSIRCVKYLLDNDI-------ICEDAMYYAVLSEYETMVDYLLFNHFSVDSV-VNGHTCM  359 (446)
T ss_pred             ------cccCCCHHHHHHHcCCHHHHHHHHHCCC-------ccccHHHHHHHhCHHHHHHHHHHCCCCCCCc-cccccHH
Confidence                  1356788888888888888888888764       4688888888888888888888888888885 5788888


Q ss_pred             HHHHHCCChhhHHHHH
Q 035705          625 ALARENGNGNEAENVI  640 (758)
Q Consensus       625 ~~A~~~~~~~~~~~ll  640 (758)
                      |+|++.++.++++.|+
T Consensus       360 ~~a~~~~~~~~~~~ll  375 (446)
T PHA02946        360 SECVRLNNPVILSKLM  375 (446)
T ss_pred             HHHHHcCCHHHHHHHH
Confidence            8888888887766555

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.7e-50  Score=445.19  Aligned_cols=452  Identities=14%  Similarity=0.086  Sum_probs=353.4

Q ss_pred             cccchhHHHHHHHHHc---CCHHHHHhhhcCCCCCcccccceeeccccceeeecccccchhhhhhhcccCCchHHHHHHH
Q 035705           22 DYEAEVSQRLVDAAHV---NDVKRANECIGDPFVDVNFVGTVSLRAKKTELVLHDEAAHEVRVVYEEFKTEVTALFLAAH   98 (758)
Q Consensus        22 ~~~~~~~~~L~~A~~~---G~~~~v~~LL~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~   98 (758)
                      .-+..+.||||.|+..   |+.++|+.||+.| +|++..                            +..|+||||+|+.
T Consensus        27 ~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~g-a~v~~~----------------------------~~~g~TpL~~Aa~   77 (661)
T PHA02917         27 TRNQFKNNALHAYLFNEHCNNVEVVKLLLDSG-TNPLHK----------------------------NWRQLTPLEEYTN   77 (661)
T ss_pred             ccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCC-CCcccc----------------------------CCCCCCHHHHHHH
Confidence            3377889999997555   8899999999987 888754                            6899999999999


Q ss_pred             cCcHH----HHHHHHhCCCCCCcccccCcchhHHhhhChHHHHHHHHhcCCCccccchHHHHHHHcCChhHHHHHHhccC
Q 035705           99 AGNLT----LVRKLLSLGANVNQKLFRGYATTAAVREDHLEILDLLIKAGACQEACEEALLETSYLGQARPAELLMATDL  174 (758)
Q Consensus        99 ~g~~~----iv~~Ll~~ga~~~~~~~~g~~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~l~~A~~~g~~~iv~~Ll~~~~  174 (758)
                      .|+.+    +|+.|++.+..+|..+. ..++++|+.+|+.++|++|+++|++++.                         
T Consensus        78 ~g~~~v~~~~~~~Ll~~~~~~n~~~~-~~~~~~a~~~~~~e~vk~Ll~~Gadin~-------------------------  131 (661)
T PHA02917         78 SRHVKVNKDIAMALLEATGYSNINDF-NIFSYMKSKNVDVDLIKVLVEHGFDLSV-------------------------  131 (661)
T ss_pred             cCChhHHHHHHHHHHhccCCCCCCCc-chHHHHHhhcCCHHHHHHHHHcCCCCCc-------------------------
Confidence            99954    56788887655555432 1234889999999999999999999985                         


Q ss_pred             CCCCCCchHHHHHH--hcCCHHHHHHHHhCCCCCCcchhhhhh-ccccccccCCCCchhHHHHh-----------cCCHH
Q 035705          175 IRPQVSVHALVSAC--FRGFVNVVDTLIKCGVDANAIDRVLLQ-SSKPALHANFDCNALVGAVV-----------SRQIS  240 (758)
Q Consensus       175 ~~~~~~~t~L~~A~--~~g~~~iv~~Ll~~g~d~~~~~~~~~~-~~~~~~~~~~~~t~L~~A~~-----------~g~~~  240 (758)
                       .+..|.|||+.|+  ..|+.+++++|+++|+++|..+..... ..........+.||||+|+.           .++.+
T Consensus       132 -~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~e  210 (661)
T PHA02917        132 -KCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPE  210 (661)
T ss_pred             -cCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHH
Confidence             6677999999553  578999999999999999865421000 00000011234699999986           46899


Q ss_pred             HHHHHHHcCCCCccccccCccccccccchhhhhhccccccccccchhhhhhhchHHHHHHHhhccCCCCCCCCchHHHHH
Q 035705          241 VVRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHA  320 (758)
Q Consensus       241 iv~~Ll~~ga~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~g~t~L~~A  320 (758)
                      +|++|+++|++++.+                                                      +.+|.||||+|
T Consensus       211 iv~~Li~~Gadvn~~------------------------------------------------------d~~G~TpLh~A  236 (661)
T PHA02917        211 VVKCLINHGIKPSSI------------------------------------------------------DKNYCTALQYY  236 (661)
T ss_pred             HHHHHHHCCCCcccC------------------------------------------------------CCCCCcHHHHH
Confidence            999999999999986                                                      45788999999


Q ss_pred             HHcCCH--HHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHc---------CCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 035705          321 ILCNNA--RAVELLLNCAVDKEFPVQTYSKTELRPIHLAARL---------GSAKILRRLISAGCNINSRTAAGETAAMI  389 (758)
Q Consensus       321 ~~~g~~--~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~---------g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~  389 (758)
                      +..|+.  ++|++|++ |++++......+..+.+|+++|+..         .+.++|++|++.|++      .+.+++++
T Consensus       237 ~~~g~~~~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~------~~~~~~~~  309 (661)
T PHA02917        237 IKSSHIDIDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKP------HGIMCSIV  309 (661)
T ss_pred             HHcCCCcHHHHHHHHh-CCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCC------CceeEeee
Confidence            999985  79999985 8887654444677889999999942         178999999999985      36788999


Q ss_pred             HHHcCCHHHHHHHHH-CCCCCCCcccCCCCHHHHHHhcc-cccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHH
Q 035705          390 CARYKHEECLKFLAS-EGADLGLINYAGQCANSIAKSSR-WTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVD  467 (758)
Q Consensus       390 A~~~g~~~iv~~Ll~-~g~~~~~~~~~g~t~l~~a~~~~-~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~  467 (758)
                      ++..+..+++++++. .|.+         +++|.+.... ......++++.|++.|++++.++..|.++.    ...+.+
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~----~~~~~~  376 (661)
T PHA02917        310 PLWRNDKETISLILKTMNSD---------VLQHILIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRN----INIDSY  376 (661)
T ss_pred             cccccchHHHHHHHHHhchH---------HHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCCCCccccchh----hcCCHH
Confidence            999999999999985 3443         4656554321 112246799999999999999999998854    467888


Q ss_pred             HHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCH--HHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhcc
Q 035705          468 ALKKLIEWADVDLDEQDADGFSAAMIAAAAGHV--EAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYAL  545 (758)
Q Consensus       468 ~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~--~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~  545 (758)
                      +++.||...|++++..+.+|.||||.|++.+..  +...+...          .|.+..  +...+..++++ +|...+.
T Consensus       377 ~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~~~v~-~Ll~~GA  443 (661)
T PHA02917        377 TMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYK----------KGLCDM--SYACPILSTIN-ICLPYLK  443 (661)
T ss_pred             HHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhhhh----------hccchh--hhhhhhHHHHH-HHHHCCC
Confidence            999999866888888888899999999876553  43322222          222222  22233667776 4556778


Q ss_pred             ccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH-cCcHHHHHHHHhCCCCCCCC
Q 035705          546 EEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAK-SGHGSVCQLLISSGAKCDIE  616 (758)
Q Consensus       546 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~-~~~~~iv~~Ll~~gad~~~~  616 (758)
                      +++.+|..|+||||+|+..++.+++++|+++|+++|.+|..|+||||+|+. .++.+++++|+++|++++..
T Consensus       444 dIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdin~~d~~G~T~L~~A~~~~~~~~iv~~LL~~ga~i~~i  515 (661)
T PHA02917        444 DINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINESRNIELLKMLLCHKPTLDCV  515 (661)
T ss_pred             CCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhCCCHHHHHHHHHcCCChhHH
Confidence            889999999999999999999999999999999999999999999999996 68899999999999998754

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=6.5e-49  Score=419.46  Aligned_cols=356  Identities=16%  Similarity=0.130  Sum_probs=294.7

Q ss_pred             hhHHhhhChHHHHHHHHhcCCCccccchHHHHHHH--cCChhHHHHHHhccC---CCCCCCchHHHHHHhcCCHHHHHHH
Q 035705          125 TTAAVREDHLEILDLLIKAGACQEACEEALLETSY--LGQARPAELLMATDL---IRPQVSVHALVSACFRGFVNVVDTL  199 (758)
Q Consensus       125 l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~l~~A~~--~g~~~iv~~Ll~~~~---~~~~~~~t~L~~A~~~g~~~iv~~L  199 (758)
                      +..++..++.++++.+++.. ......++||.++.  .++.+++++|++++.   ..+..|.||||+|+..|+.+++++|
T Consensus        13 l~~~~~~~n~~~~~~~l~~~-~~~g~~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lL   91 (446)
T PHA02946         13 LYAKYNSKNLDVFRNMLQAI-EPSGNYHILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAML   91 (446)
T ss_pred             HHHHHccCcHHHHHHHHhcc-CCCCCChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            57888899999999999764 23334678887653  446789999998876   3456789999999999999999999


Q ss_pred             HhCCCCCCcchhhhhhccccccccCCCCchhHHHHhcC--CHHHHHHHHHcCCCCccccccCccccccccchhhhhhccc
Q 035705          200 IKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSR--QISVVRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGL  277 (758)
Q Consensus       200 l~~g~d~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g--~~~iv~~Ll~~ga~~~~~~~~g~~~~~~~~~~~~~~~~~~  277 (758)
                      +++|+++|..+             ..|.||||+|+..+  ..+++++|+++|++++..                      
T Consensus        92 L~~GAdin~~d-------------~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~----------------------  136 (446)
T PHA02946         92 LTHGADPNACD-------------KQHKTPLYYLSGTDDEVIERINLLVQYGAKINNS----------------------  136 (446)
T ss_pred             HHCcCCCCCCC-------------CCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccc----------------------
Confidence            99999999888             45999999998766  488999999999998853                      


Q ss_pred             cccccccchhhhhhhchHHHHHHHhhccCCCCCCCCchHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHH
Q 035705          278 AEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLA  357 (758)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A  357 (758)
                                                     .+..|.|||| |+..|+.+++++|++.|++++.    .+..|+||||+|
T Consensus       137 -------------------------------~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~----~d~~G~t~Lh~A  180 (446)
T PHA02946        137 -------------------------------VDEEGCGPLL-ACTDPSERVFKKIMSIGFEARI----VDKFGKNHIHRH  180 (446)
T ss_pred             -------------------------------cCCCCCcHHH-HHHCCChHHHHHHHhccccccc----cCCCCCCHHHHH
Confidence                                           2568999997 6778999999999999999876    789999999999


Q ss_pred             HHcCC--HHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchH
Q 035705          358 ARLGS--AKILRRLISAGCNINSRTAAGETAAMICARYK--HEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQ  433 (758)
Q Consensus       358 ~~~g~--~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g--~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~  433 (758)
                      +..++  .+++++|+++|++++.+|.+|.||||+|+..+  +.+++++|++ |++++.+|..|.                
T Consensus       181 ~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~----------------  243 (446)
T PHA02946        181 LMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGD----------------  243 (446)
T ss_pred             HHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCC----------------
Confidence            87654  79999999999999999999999999999986  7899999885 788877766665                


Q ss_pred             HHHHHHHHcCCCcccCCCCCCcHHHHHHHcCC-HHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Q 035705          434 QAVVDSIRSGNIIQSSNASRFSPLMFVTQAND-VDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGAN  512 (758)
Q Consensus       434 ~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~-~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~  512 (758)
                                           ||||+|+..++ .++++.|+++ |.+++     ++ +++.|+..+..++++++.++|. 
T Consensus       244 ---------------------TpLh~A~~~~~~~~~~~~Ll~~-g~~~~-----~~-~~~~a~~~~~~~~~e~l~~~g~-  294 (446)
T PHA02946        244 ---------------------SPLTLLIKTLSPAHLINKLLST-SNVIT-----DQ-TVNICIFYDRDDVLEIINDKGK-  294 (446)
T ss_pred             ---------------------CHHHHHHHhCChHHHHHHHHhC-CCCCC-----Cc-HHHHHHHcCchHHHHHHHHcCc-
Confidence                                 56666666666 4777788876 44433     22 3788888888888888887764 


Q ss_pred             CCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHH
Q 035705          513 IKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLM  592 (758)
Q Consensus       513 ~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~  592 (758)
                           ..|.||||+|+..|+.+++++|+.+.        ..|.||||+|+..++.+++++|+.+|+++|.. ..|.||||
T Consensus       295 -----~~~~TpLh~Aa~~g~~eivk~Ll~~~--------~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~n~~-~~G~t~l~  360 (446)
T PHA02946        295 -----QYDSTDFKMAVEVGSIRCVKYLLDND--------IICEDAMYYAVLSEYETMVDYLLFNHFSVDSV-VNGHTCMS  360 (446)
T ss_pred             -----ccCCCHHHHHHHcCCHHHHHHHHHCC--------CccccHHHHHHHhCHHHHHHHHHHCCCCCCCc-cccccHHH
Confidence                 24678888888888888888888642        35789999999999999999999999999986 58999999


Q ss_pred             HHHHcCcHHHHHHHHhCCCC
Q 035705          593 LAAKSGHGSVCQLLISSGAK  612 (758)
Q Consensus       593 ~A~~~~~~~iv~~Ll~~gad  612 (758)
                      +|++.++.++++.|+++..+
T Consensus       361 ~a~~~~~~~~~~~ll~~~~~  380 (446)
T PHA02946        361 ECVRLNNPVILSKLMLHNPT  380 (446)
T ss_pred             HHHHcCCHHHHHHHHhcCcc
Confidence            99999999999999995433

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.6e-48  Score=415.70  Aligned_cols=384  Identities=16%  Similarity=0.143  Sum_probs=310.2

Q ss_pred             HHHHHHHHhCCCCCC-cchhhhhhccccccccCCCCchhHHHHhcC---CHHHHHHHHHcCCCCccccccCccccccccc
Q 035705          193 VNVVDTLIKCGVDAN-AIDRVLLQSSKPALHANFDCNALVGAVVSR---QISVVRLLLQAGVKMDIKVRMGAWSWDMDTG  268 (758)
Q Consensus       193 ~~iv~~Ll~~g~d~~-~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g---~~~iv~~Ll~~ga~~~~~~~~g~~~~~~~~~  268 (758)
                      ...+++.++.-+++| ..+             ..|.||||+|+..|   +.++|++|+++||+++.++            
T Consensus        20 ~~~~~~~~~~~~~in~~kd-------------~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD------------   74 (672)
T PHA02730         20 YKKIKLEIETCHNLSKHID-------------RRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRN------------   74 (672)
T ss_pred             HHHHHHHHHHhcchhhhcC-------------CCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccC------------
Confidence            456778888777887 555             45999999999997   5999999999999999864            


Q ss_pred             hhhhhhccccccccccchhhhhhhchHHHHHHHhhccCCCCCCCCchHHHHHHHcC--CHHHHHHHHHccCCCCCCcccC
Q 035705          269 EELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCN--NARAVELLLNCAVDKEFPVQTY  346 (758)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~g~~~~~~~~~~  346 (758)
                                                                ..|+||||+|+..+  +.++|++|++.|++.+.  +..
T Consensus        75 ------------------------------------------~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~--~~~  110 (672)
T PHA02730         75 ------------------------------------------NEGLTPLGVYSKRKYVKSQIVHLLISSYSNASN--ELT  110 (672)
T ss_pred             ------------------------------------------CCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCc--ccc
Confidence                                                      57889999999876  79999999999765532  125


Q ss_pred             CCCCCcHHHHHHH--cCCHHHHHHHHH-cCCCCCCCCC-----CCCcHHHHHHHcCCHHHHHHHHHCCCCCC-------C
Q 035705          347 SKTELRPIHLAAR--LGSAKILRRLIS-AGCNINSRTA-----AGETAAMICARYKHEECLKFLASEGADLG-------L  411 (758)
Q Consensus       347 ~~~g~t~L~~A~~--~g~~~~v~~Ll~-~g~~~~~~~~-----~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~-------~  411 (758)
                      +..+.+||+.++.  +++.++|++|++ .+++++....     .|.+|++++...+++++|++|+++|++++       .
T Consensus       111 ~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~  190 (672)
T PHA02730        111 SNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCM  190 (672)
T ss_pred             cccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCccccccccccc
Confidence            5668889998888  888999999996 6788876632     78999999999999999999999999985       2


Q ss_pred             cccCCC-CHHHHHHhc--ccccchHHHHHHHHHcCCCcccCCCCCCcHHHH--HHHcCCHHHHHHHHH------------
Q 035705          412 INYAGQ-CANSIAKSS--RWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMF--VTQANDVDALKKLIE------------  474 (758)
Q Consensus       412 ~~~~g~-t~l~~a~~~--~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~--a~~~~~~~~v~~Ll~------------  474 (758)
                      .+.... |.||+.+.+  .......+++++|+++|++++.++..|.||||+  +...++.|++++|++            
T Consensus       191 ~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~  270 (672)
T PHA02730        191 YDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDIS  270 (672)
T ss_pred             ccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhcccccccccccc
Confidence            333444 444534433  135568899999999999999999999999985  555677999999998            


Q ss_pred             --------------------hcCCCCcc--------------------cCCCCCc---------------------HHHH
Q 035705          475 --------------------WADVDLDE--------------------QDADGFS---------------------AAMI  493 (758)
Q Consensus       475 --------------------~~~~~~~~--------------------~~~~g~t---------------------~L~~  493 (758)
                                          + |+|+..                    .+..|.+                     .||.
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~  349 (672)
T PHA02730        271 QPYIRGVLADYLNKRFRVTPY-NVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLIN  349 (672)
T ss_pred             chhhhhhHHHhhhhhhhcccC-CcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHH
Confidence                                3 566544                    4555544                     5666


Q ss_pred             HHHcC---CHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCC----hhHHHHHHHhhc-cccCCCCCCCchHHHH---HH
Q 035705          494 AAAAG---HVEAFRLLLHAGANIKLQNKYGETAITLAELNRN----GEVLEQVILEYA-LEEGQKGSAGFYALHR---AA  562 (758)
Q Consensus       494 A~~~g---~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~ll~~~~-~~~~~~~~~g~t~L~~---A~  562 (758)
                      -...+   +.+++++|+++||+++.. ..|.||||+|+..++    .++++.|+.+.+ .+++..|..|.||||.   |.
T Consensus       350 Y~~~~~~v~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~  428 (672)
T PHA02730        350 YLHYGDMVSIPILRCMLDNGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSR  428 (672)
T ss_pred             HHhcCCcCcHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHH
Confidence            66655   689999999999999985 789999999998875    799998887765 4788899999999994   33


Q ss_pred             HcC---------CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCC-CCCcHHHHHHHC--
Q 035705          563 KRG---------DFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENA-RNETALALAREN--  630 (758)
Q Consensus       563 ~~g---------~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~-~g~t~L~~A~~~--  630 (758)
                      ..+         ..+++++|+++|+++|.+|..|+||||+|+..++.+++++|+++||++|.+|. .|.||||+|+..  
T Consensus       429 ~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~  508 (672)
T PHA02730        429 FNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRE  508 (672)
T ss_pred             hccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhc
Confidence            232         23679999999999999999999999999999999999999999999999997 599999999874  


Q ss_pred             CChhhHHHHHHHHHHHHHHhCCCccc
Q 035705          631 GNGNEAENVILDELALTLVLDGTYVK  656 (758)
Q Consensus       631 ~~~~~~~~ll~~~~~~~L~~~g~~~~  656 (758)
                      ++.+         +++.|+++|+++.
T Consensus       509 ~~~e---------Iv~~LLs~ga~i~  525 (672)
T PHA02730        509 NKTK---------LVDLLLSYHPTLE  525 (672)
T ss_pred             CcHH---------HHHHHHHcCCCHH
Confidence            5665         5556777777654

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=5.2e-48  Score=422.05  Aligned_cols=398  Identities=16%  Similarity=0.146  Sum_probs=271.5

Q ss_pred             HcCcHHHHHHHHhCC-CCCCcc-cccCcch-hHHhh--hChHHHHHHHHhcCCCccccchHHHHHHHcCChhHHHHHHhc
Q 035705           98 HAGNLTLVRKLLSLG-ANVNQK-LFRGYAT-TAAVR--EDHLEILDLLIKAGACQEACEEALLETSYLGQARPAELLMAT  172 (758)
Q Consensus        98 ~~g~~~iv~~Ll~~g-a~~~~~-~~~g~~l-~~A~~--~g~~~iv~~Ll~~ga~~~~~~~~l~~A~~~g~~~iv~~Ll~~  172 (758)
                      +.++.++|++|+++| +|+|.. +..|.|+ |+|+.  .++.+++++|+++|++++.                       
T Consensus       151 ~~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~-----------------------  207 (764)
T PHA02716        151 RGIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNL-----------------------  207 (764)
T ss_pred             cCCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCC-----------------------
Confidence            468889999999999 999988 7778865 77654  3578899999999988875                       


Q ss_pred             cCCCCCCCchHHHHHHhcCC--HHHHHHHHhCCCCCCcchhhhhhccccccccCCCCchhHHHH---hcCCHHHHHHHHH
Q 035705          173 DLIRPQVSVHALVSACFRGF--VNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAV---VSRQISVVRLLLQ  247 (758)
Q Consensus       173 ~~~~~~~~~t~L~~A~~~g~--~~iv~~Ll~~g~d~~~~~~~~~~~~~~~~~~~~~~t~L~~A~---~~g~~~iv~~Ll~  247 (758)
                         .+..|.||||+|+..|+  .++|++|+++|+|+|..+             ..|+||||+|+   ..++.++++.|++
T Consensus       208 ---kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD-------------~~G~TPLh~Ai~~a~n~~~EIvkiLie  271 (764)
T PHA02716        208 ---QNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKC-------------VNGMSPIMTYIINIDNINPEITNIYIE  271 (764)
T ss_pred             ---CCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCC-------------CCCCCHHHHHHHhhhccCHHHHHHHHH
Confidence               56678899999998885  488999999999999887             45899999875   4678899998888


Q ss_pred             cCCCCccccccCccccccccchhhhhhccccccccccchhhhhhhchHHHHHHHhhccCCCCCCCCchH---HHHHHHcC
Q 035705          248 AGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTL---IHHAILCN  324 (758)
Q Consensus       248 ~ga~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~g~t~---L~~A~~~g  324 (758)
                      .+..-...                                                        ...++   +..|+..|
T Consensus       272 ~~d~n~~~--------------------------------------------------------~~~~~L~~~i~AA~~g  295 (764)
T PHA02716        272 SLDGNKVK--------------------------------------------------------NIPMILHSYITLARNI  295 (764)
T ss_pred             hccccccc--------------------------------------------------------cchhhhHHHHHHHHcC
Confidence            64221100                                                        01122   33578888


Q ss_pred             CHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHH--cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH----------
Q 035705          325 NARAVELLLNCAVDKEFPVQTYSKTELRPIHLAAR--LGSAKILRRLISAGCNINSRTAAGETAAMICAR----------  392 (758)
Q Consensus       325 ~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~----------  392 (758)
                      +.+++++|++.|++++.    +|..|+||||+|+.  .++.+++++|+++|++++.+|..|.||||+|+.          
T Consensus       296 ~leiVklLLe~GAdIN~----kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~  371 (764)
T PHA02716        296 DISVVYSFLQPGVKLHY----KDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDP  371 (764)
T ss_pred             CHHHHHHHHhCCCceec----cCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccc
Confidence            99999999998888765    67888999998764  457889999999999999888889999998765          


Q ss_pred             ----cCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHH
Q 035705          393 ----YKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDA  468 (758)
Q Consensus       393 ----~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~  468 (758)
                          .++.+++++|+++|++++.++..|.||||.++......+..+++++|++.++.....+                +.
T Consensus       372 ~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~----------------~~  435 (764)
T PHA02716        372 ETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKH----------------RI  435 (764)
T ss_pred             cccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhh----------------hh
Confidence                2566777777777777777777777777643322233344555555555443211111                01


Q ss_pred             HHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccC
Q 035705          469 LKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEG  548 (758)
Q Consensus       469 v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~  548 (758)
                      ++.++.+       .+.. ..++|.++..+..++..++.+...-.       .+        ...+++..+ .....+++
T Consensus       436 ~q~ll~~-------~d~~-~~~lhh~~a~~~~~~~~~~~~~~~~~-------~~--------~~~~v~~~~-ii~~~nvN  491 (764)
T PHA02716        436 LQDLLIR-------VDDT-PCIIHHIIAKYNIPTDLYTDEYEPYD-------ST--------KIHDVYHCA-IIERYNNA  491 (764)
T ss_pred             hhhhhhc-------cCcc-hhhHHHHHHhcCcchhhhhhhhhhcc-------cc--------ccchhhHHH-HHhhcccc
Confidence            1111111       1111 12255555555555444333221100       00        111222211 12344567


Q ss_pred             CCCCCCchHHHHHHHcCCH-----HHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcH-----HHHHHHHhCCCCCCCCCC
Q 035705          549 QKGSAGFYALHRAAKRGDF-----DLVHTLVSRCYDVNASDADGYTPLMLAAKSGHG-----SVCQLLISSGAKCDIENA  618 (758)
Q Consensus       549 ~~~~~g~t~L~~A~~~g~~-----~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~-----~iv~~Ll~~gad~~~~d~  618 (758)
                      ..|..|+||||+|+..|+.     +++++|++.|+++|.+|..|+||||+|+++|+.     ++|++||++|++++..  
T Consensus       492 ~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~~ga~~~~~--  569 (764)
T PHA02716        492 VCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINIPTKNGVTPLMLTMRNNRLSGHQWYIVKNILDKRPNVDIV--  569 (764)
T ss_pred             ccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCccccHHHHHHHHHhcCCCcchH--
Confidence            7778888888888887765     455889999999999999999999999988865     8899999998888775  


Q ss_pred             CCCcHHHHHHHCCChhhHHHHH
Q 035705          619 RNETALALARENGNGNEAENVI  640 (758)
Q Consensus       619 ~g~t~L~~A~~~~~~~~~~~ll  640 (758)
                          .|++|...++.+.+..+.
T Consensus       570 ----~l~~~~~~~~~~~~~ll~  587 (764)
T PHA02716        570 ----IIFLDKCYANGKFPSLLL  587 (764)
T ss_pred             ----HHHHHhhhhhhHHHHHHH
Confidence                478888777776555444

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.9e-47  Score=408.98  Aligned_cols=300  Identities=13%  Similarity=0.120  Sum_probs=216.8

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHccCCCC-CCc--ccCCCCCC-cHHHHH------HHcCCHHHHHHHHHcCCCCCCCCC
Q 035705          312 NGRTLIHHAILCNNARAVELLLNCAVDKE-FPV--QTYSKTEL-RPIHLA------ARLGSAKILRRLISAGCNINSRTA  381 (758)
Q Consensus       312 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~--~~~~~~g~-t~L~~A------~~~g~~~~v~~Ll~~g~~~~~~~~  381 (758)
                      .|.+|++.|...++.++|++|+++|++++ ..+  ...+..+. |.||++      ...++.|++++|+++|+++|.+|.
T Consensus       154 ~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~  233 (672)
T PHA02730        154 LGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDE  233 (672)
T ss_pred             cchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCC
Confidence            67888888888888888888888888874 111  11223333 444433      345678888888888888888888


Q ss_pred             CCCcHHHH--HHHcCCHHHHHHHHHCCCCCCCcccC----CCCHHHHHHhcccc----cchHHHHHHHHHcCCC------
Q 035705          382 AGETAAMI--CARYKHEECLKFLASEGADLGLINYA----GQCANSIAKSSRWT----LGFQQAVVDSIRSGNI------  445 (758)
Q Consensus       382 ~g~t~L~~--A~~~g~~~iv~~Ll~~g~~~~~~~~~----g~t~l~~a~~~~~~----~~~~~~~~~ll~~g~~------  445 (758)
                      .|.||||+  |...++.|+|++|++...+....+..    -+..++--.....+    .-..+++..|++.+..      
T Consensus       234 ~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~  313 (672)
T PHA02730        234 GGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMR  313 (672)
T ss_pred             CCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhh
Confidence            88888874  44456688888888733322111110    01111111111111    1234566666664432      


Q ss_pred             -cccCCCCCCc---------------------HHHHHHHcC---CHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCC-
Q 035705          446 -IQSSNASRFS---------------------PLMFVTQAN---DVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGH-  499 (758)
Q Consensus       446 -~~~~~~~~~t---------------------~L~~a~~~~---~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~-  499 (758)
                       +...+..|.+                     .||.-.+.+   +.+++++|+++ |+++|.. ..|.||||+|+..++ 
T Consensus       314 ~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~-GAdIN~k-~~G~TpLH~Aa~~nnn  391 (672)
T PHA02730        314 SITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDN-GATMDKT-TDNNYPLHDYFVNNNN  391 (672)
T ss_pred             ccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHC-CCCCCcC-CCCCcHHHHHHHHcCC
Confidence             1124444443                     666666655   58999999999 8999985 799999999998875 


Q ss_pred             ---HHHHHHHHhCCC--CCCcCCCCCCcHHHH---HHHcC---------ChhHHHHHHHhhccccCCCCCCCchHHHHHH
Q 035705          500 ---VEAFRLLLHAGA--NIKLQNKYGETAITL---AELNR---------NGEVLEQVILEYALEEGQKGSAGFYALHRAA  562 (758)
Q Consensus       500 ---~~~v~~Ll~~g~--~~~~~~~~g~t~L~~---A~~~~---------~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~  562 (758)
                         .+++++|+++|+  +++..|..|.||||.   |...+         ..++++ +|...+++++..|..|.||||+|+
T Consensus       392 ~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk-~LIs~GADINakD~~G~TPLh~Aa  470 (672)
T PHA02730        392 IVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFD-ILSKYMDDIDMIDNENKTLLYYAV  470 (672)
T ss_pred             cchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHH-HHHhcccchhccCCCCCCHHHHHH
Confidence               899999999998  689999999999984   33232         123466 555788899999999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCCCCC-CCCcHHHHHHHc--CcHHHHHHHHhCCCCCC
Q 035705          563 KRGDFDLVHTLVSRCYDVNASDA-DGYTPLMLAAKS--GHGSVCQLLISSGAKCD  614 (758)
Q Consensus       563 ~~g~~~~v~~Ll~~ga~~n~~d~-~g~tpL~~A~~~--~~~~iv~~Ll~~gad~~  614 (758)
                      ..++.+++++|+++|+++|..|. .|.||||+|+..  ++.+++++|+++|+++.
T Consensus       471 ~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga~i~  525 (672)
T PHA02730        471 DVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHPTLE  525 (672)
T ss_pred             HhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCCCHH
Confidence            99999999999999999999997 599999999974  78999999999999875

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=5.5e-46  Score=406.19  Aligned_cols=374  Identities=14%  Similarity=0.085  Sum_probs=278.8

Q ss_pred             hcCCHHHHHHHHhCC-CCCCcc-hhhhhhccccccccCCCCchhHHHHh--cCCHHHHHHHHHcCCCCccccccCccccc
Q 035705          189 FRGFVNVVDTLIKCG-VDANAI-DRVLLQSSKPALHANFDCNALVGAVV--SRQISVVRLLLQAGVKMDIKVRMGAWSWD  264 (758)
Q Consensus       189 ~~g~~~iv~~Ll~~g-~d~~~~-~~~~~~~~~~~~~~~~~~t~L~~A~~--~g~~~iv~~Ll~~ga~~~~~~~~g~~~~~  264 (758)
                      ..++.+++++|+++| +|+|.. +             ..|.||||+|+.  .++.+++++|+++|++++.+         
T Consensus       151 ~~v~leiVk~LLe~G~ADIN~~~d-------------~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~k---------  208 (764)
T PHA02716        151 RGIDLDLIKYMVDVGIVNLNYVCK-------------KTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQ---------  208 (764)
T ss_pred             cCCCHHHHHHHHHCCCCCcccccC-------------CCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCC---------
Confidence            468899999999999 999987 5             459999999864  46789999999999999976         


Q ss_pred             cccchhhhhhccccccccccchhhhhhhchHHHHHHHhhccCCCCCCCCchHHHHHHHcCC--HHHHHHHHHccCCCCCC
Q 035705          265 MDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCNN--ARAVELLLNCAVDKEFP  342 (758)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~g~t~L~~A~~~g~--~~~v~~Ll~~g~~~~~~  342 (758)
                                                                   +..|.||||+|+..|+  .++|++|+++|++++. 
T Consensus       209 ---------------------------------------------D~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~-  242 (764)
T PHA02716        209 ---------------------------------------------NNHLITPLHTYLITGNVCASVIKKIIELGGDMDM-  242 (764)
T ss_pred             ---------------------------------------------CCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCC-
Confidence                                                         4478899999999995  5899999999999887 


Q ss_pred             cccCCCCCCcHHHHHH---HcCCHHHHHHHHHcCCCCCCCCCCCCcHHH---HHHHcCCHHHHHHHHHCCCCCCCcccCC
Q 035705          343 VQTYSKTELRPIHLAA---RLGSAKILRRLISAGCNINSRTAAGETAAM---ICARYKHEECLKFLASEGADLGLINYAG  416 (758)
Q Consensus       343 ~~~~~~~g~t~L~~A~---~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~---~A~~~g~~~iv~~Ll~~g~~~~~~~~~g  416 (758)
                         ++..|+||||.|+   ..++.++++.|++.+......  ...++++   .|+..|+.+++++|+++|++++.+|..|
T Consensus       243 ---kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~--~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G  317 (764)
T PHA02716        243 ---KCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVK--NIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAG  317 (764)
T ss_pred             ---CCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccc--cchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCC
Confidence               6889999999885   567899999999874332111  1123343   4788999999999999999999999999


Q ss_pred             CCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHH--------------cCCHHHHHHHHHhcCCCCcc
Q 035705          417 QCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQ--------------ANDVDALKKLIEWADVDLDE  482 (758)
Q Consensus       417 ~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~--------------~~~~~~v~~Ll~~~~~~~~~  482 (758)
                      +||||+|+...  .+..+++++|++.|++++.+|..|+||||+|+.              .++.+++++|+++ |++++.
T Consensus       318 ~TPLH~Aaa~~--~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~-GADIn~  394 (764)
T PHA02716        318 RTCLHQYILRH--NISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISL-GADITA  394 (764)
T ss_pred             CCHHHHHHHHh--CCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHC-CCCCCC
Confidence            99999875421  235678888888888888888888888888765              2567788888876 778888


Q ss_pred             cCCCCCcHHHH----HHHcCCHHHHHHHHhCCCCCCcCCC--------CCCcH--HHHHHHcCChhHHHHHHHhhccccC
Q 035705          483 QDADGFSAAMI----AAAAGHVEAFRLLLHAGANIKLQNK--------YGETA--ITLAELNRNGEVLEQVILEYALEEG  548 (758)
Q Consensus       483 ~~~~g~t~L~~----A~~~g~~~~v~~Ll~~g~~~~~~~~--------~g~t~--L~~A~~~~~~~~v~~ll~~~~~~~~  548 (758)
                      ++..|.||||.    |...++.+++++|++.|+.....+.        .+.+|  +|.++..+..+....+......   
T Consensus       395 kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~---  471 (764)
T PHA02716        395 VNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPY---  471 (764)
T ss_pred             cCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhc---
Confidence            88888888873    2234567788888777654332221        11222  3333333333322111100000   


Q ss_pred             CCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcH-----HHHHHHHhCCCCCCCCCCCCCcH
Q 035705          549 QKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHG-----SVCQLLISSGAKCDIENARNETA  623 (758)
Q Consensus       549 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~-----~iv~~Ll~~gad~~~~d~~g~t~  623 (758)
                                   ......+++..++..+.++|..|..|+||||+|+..|+.     +++++|++.|+|+|.+|++|+||
T Consensus       472 -------------~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~~d~~G~TP  538 (764)
T PHA02716        472 -------------DSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINIPTKNGVTP  538 (764)
T ss_pred             -------------cccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCcccCCCCCCH
Confidence                         001223455666667889999999999999999999876     45699999999999999999999


Q ss_pred             HHHHHHCCChhhHHHHHHHHHHHHHHhCCCccccc
Q 035705          624 LALARENGNGNEAENVILDELALTLVLDGTYVKKH  658 (758)
Q Consensus       624 L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~~~~~  658 (758)
                      ||+|+++|+.+....    ++++.|+++|++++..
T Consensus       539 Lh~A~~~g~~~~~~~----eIvk~LL~~ga~~~~~  569 (764)
T PHA02716        539 LMLTMRNNRLSGHQW----YIVKNILDKRPNVDIV  569 (764)
T ss_pred             HHHHHHcCCccccHH----HHHHHHHhcCCCcchH
Confidence            999999998733321    4777888888887776

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=7.6e-47  Score=392.13  Aligned_cols=147  Identities=31%  Similarity=0.378  Sum_probs=137.5

Q ss_pred             CcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHH-hhccccCCCCCCCchHH
Q 035705          480 LDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVIL-EYALEEGQKGSAGFYAL  558 (758)
Q Consensus       480 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~-~~~~~~~~~~~~g~t~L  558 (758)
                      +|..|.+|.||||+|++.|+.+.++.|+..|++++.++.++.||||.|+..|+...++.||. ......+..|-.|+|||
T Consensus       266 v~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpL  345 (929)
T KOG0510|consen  266 VNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPL  345 (929)
T ss_pred             hhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCch
Confidence            45678999999999999999999999999999999999999999999999999999999999 55667788899999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCC---CCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHH
Q 035705          559 HRAAKRGDFDLVHTLVSRCYDVN---ASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALAL  626 (758)
Q Consensus       559 ~~A~~~g~~~~v~~Ll~~ga~~n---~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~  626 (758)
                      |.|+++|+..++++||+.|+..+   ..|.+|.||||.|+..|+..+|++|+.+||++..+|+.|.|++++
T Consensus       346 Hlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  346 HLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADIGVKNKKGKSAFDT  416 (929)
T ss_pred             hhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCceeeccccccccccc
Confidence            99999999999999999999887   569999999999999999999999999999999999999999884

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.3e-45  Score=382.94  Aligned_cols=335  Identities=24%  Similarity=0.289  Sum_probs=265.5

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 035705          310 LHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMI  389 (758)
Q Consensus       310 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~  389 (758)
                      ...|.|++|.|+..+..      ++.-+..    ...|..+.||||+|++....+.+++|++.|++++..+.++.+|+|+
T Consensus        58 ~~~gd~~~~~~~~~~y~------~~~~~~~----~a~D~~~n~~l~~a~~~~~~~~i~~Lls~gad~~~~n~~~~aplh~  127 (929)
T KOG0510|consen   58 RAFGDTELHHASARNYI------LSKLAIS----YAKDSADNTPLHAAVEYNQGDKIQVLLSYGADTPLRNLNKNAPLHL  127 (929)
T ss_pred             hhhchhHHHHHHhhcch------hhhhhhh----hhhhcccCchhHHHhhcchHHHHHHHHhcCCCCChhhhhccCchhh
Confidence            34566666666666544      1111111    1145566667777777777777777777777776666667777777


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHH
Q 035705          390 CARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDAL  469 (758)
Q Consensus       390 A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v  469 (758)
                      |+..++.++++.|+++|+|++..|..+.||||.|+.    .+..+..+.|++.|+++...+.+|.+|+|.|+++|..++.
T Consensus       128 A~~~~~~s~L~~Ll~~~~dvnl~de~~~TpLh~A~~----~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~m  203 (929)
T KOG0510|consen  128 AADSGNYSCLKLLLDYGADVNLEDENGFTPLHLAAR----KNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECM  203 (929)
T ss_pred             ccccchHHHHHHHHHhcCCccccccCCCchhhHHHh----cChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhh
Confidence            777777777777777777777777777777777643    3445566666777777777777777888888888888888


Q ss_pred             HHHHHhc----CCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCC---------------CCcCCCCCCcHHHHHHHc
Q 035705          470 KKLIEWA----DVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGAN---------------IKLQNKYGETAITLAELN  530 (758)
Q Consensus       470 ~~Ll~~~----~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---------------~~~~~~~g~t~L~~A~~~  530 (758)
                      +..+.+.    +..+|..+..+.||||.|+..|+.++++.+|+.|..               ++..|.+|.||||+|+++
T Consensus       204 Ei~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~  283 (929)
T KOG0510|consen  204 EIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQ  283 (929)
T ss_pred             hhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHc
Confidence            8888722    467888888888888888888888888888877643               245688999999999999


Q ss_pred             CChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHh-cC-CCCCCCCCCCCcHHHHHHHcCcHHHHHHHHh
Q 035705          531 RNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVS-RC-YDVNASDADGYTPLMLAAKSGHGSVCQLLIS  608 (758)
Q Consensus       531 ~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g-a~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~  608 (758)
                      |+.+.+. +|...|.+++.++.++.||||.||..|+.+.|+.||+ .| ...|..|..|+||||.|++.||..++++|++
T Consensus       284 G~~~svd-~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~  362 (929)
T KOG0510|consen  284 GGPESVD-NLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLN  362 (929)
T ss_pred             CChhHHH-HHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHh
Confidence            9999998 5667889999999999999999999999999999999 55 7789999999999999999999999999999


Q ss_pred             CCCCCC---CCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCccccccccCCCcchH
Q 035705          609 SGAKCD---IENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHTKCGKGSPHV  668 (758)
Q Consensus       609 ~gad~~---~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~~~~~d~~g~t~l~~  668 (758)
                      .||+..   ..|++|.||||+|+..|+..         +++.|+.+|+++..+|+.|.|++++
T Consensus       363 ~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~---------av~~Li~~Ga~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  363 KGALFLNMSEADSDGNTALHLAAKYGNTS---------AVQKLISHGADIGVKNKKGKSAFDT  416 (929)
T ss_pred             cChhhhcccccccCCchhhhHHHHhccHH---------HHHHHHHcCCceeeccccccccccc
Confidence            999987   56999999999999999997         6668999999999999999999986

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.3e-44  Score=387.18  Aligned_cols=318  Identities=19%  Similarity=0.274  Sum_probs=284.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCC-CCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 035705          315 TLIHHAILCNNARAVELLLNCAVD-KEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARY  393 (758)
Q Consensus       315 t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  393 (758)
                      ..|..|+..|+.+.++.|++.+.. ++.    .+..|.||||.|+..|+.++|++|+++|++++..+..|.||||.|+..
T Consensus         3 ~~l~~ai~~gd~~~v~~ll~~~~~~~n~----~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~   78 (434)
T PHA02874          3 QDLRMCIYSGDIEAIEKIIKNKGNCINI----SVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKI   78 (434)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCCCC----cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc
Confidence            368899999999999999986543 343    567899999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 035705          394 KHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLI  473 (758)
Q Consensus       394 g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll  473 (758)
                      |+.+++++|+++|+++....              ......++++.+++.|++++..+..|.||||+|+..|+.+++++|+
T Consensus        79 ~~~~iv~~Ll~~g~~~~~~~--------------~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll  144 (434)
T PHA02874         79 GAHDIIKLLIDNGVDTSILP--------------IPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLF  144 (434)
T ss_pred             CCHHHHHHHHHCCCCCCcch--------------hccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHH
Confidence            99999999999999875421              1223568999999999999999999999999999999999999999


Q ss_pred             HhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCC
Q 035705          474 EWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSA  553 (758)
Q Consensus       474 ~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~  553 (758)
                      +. |++++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+. .+.+++..+..
T Consensus       145 ~~-gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~-~g~~i~~~~~~  222 (434)
T PHA02874        145 EY-GADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLID-HGNHIMNKCKN  222 (434)
T ss_pred             hC-CCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCCcCCCCC
Confidence            98 89999999999999999999999999999999999999999999999999999999999997765 56678888999


Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcC-cHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCC
Q 035705          554 GFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSG-HGSVCQLLISSGAKCDIENARNETALALARENGN  632 (758)
Q Consensus       554 g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~-~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~  632 (758)
                      |.||||.|+..+. +++.+|+ .|+++|.+|..|+||||+|+..+ +.+++++|+++|+|++.+|..|+||||+|++.++
T Consensus       223 g~TpL~~A~~~~~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~n~~d~~g~TpL~~A~~~~~  300 (434)
T PHA02874        223 GFTPLHNAIIHNR-SAIELLI-NNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTAFKYIN  300 (434)
T ss_pred             CCCHHHHHHHCCh-HHHHHHH-cCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhCC
Confidence            9999999999875 5667666 68999999999999999999875 7999999999999999999999999999999874


Q ss_pred             hhhHHHHHHHHHHHHHHhCCCccccccccC
Q 035705          633 GNEAENVILDELALTLVLDGTYVKKHTKCG  662 (758)
Q Consensus       633 ~~~~~~ll~~~~~~~L~~~g~~~~~~d~~g  662 (758)
                      ..        .+++.|+..++.++..+..+
T Consensus       301 ~~--------~~ik~ll~~~~~~~~~~~~~  322 (434)
T PHA02874        301 KD--------PVIKDIIANAVLIKEADKLK  322 (434)
T ss_pred             cc--------HHHHHHHHhcCchhhccccc
Confidence            43        35667788887777666655

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.1e-43  Score=383.90  Aligned_cols=331  Identities=21%  Similarity=0.249  Sum_probs=286.3

Q ss_pred             HHHHHHhcCCHHHHHHHHhC-CCCCCcchhhhhhccccccccCCCCchhHHHHhcCCHHHHHHHHHcCCCCccccccCcc
Q 035705          183 ALVSACFRGFVNVVDTLIKC-GVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAW  261 (758)
Q Consensus       183 ~L~~A~~~g~~~iv~~Ll~~-g~d~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~~  261 (758)
                      .|..|+..|+.++++.|++. +..++..+             ..+.||||.|+..|+.++|++|+++|++++..      
T Consensus         4 ~l~~ai~~gd~~~v~~ll~~~~~~~n~~~-------------~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~------   64 (434)
T PHA02874          4 DLRMCIYSGDIEAIEKIIKNKGNCINISV-------------DETTTPLIDAIRSGDAKIVELFIKHGADINHI------   64 (434)
T ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCCCcC-------------CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC------
Confidence            47889999999999999975 45566665             45899999999999999999999999998865      


Q ss_pred             ccccccchhhhhhccccccccccchhhhhhhchHHHHHHHhhccCCCCCCCCchHHHHHHHcCCHHHHHHHHHccCCCCC
Q 035705          262 SWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEF  341 (758)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~  341 (758)
                                                                      +..|.||||.|+..|+.+++++|+++|+++..
T Consensus        65 ------------------------------------------------~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~   96 (434)
T PHA02874         65 ------------------------------------------------NTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSI   96 (434)
T ss_pred             ------------------------------------------------CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc
Confidence                                                            34678999999999999999999999988643


Q ss_pred             CcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHH
Q 035705          342 PVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANS  421 (758)
Q Consensus       342 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~  421 (758)
                      .              +....+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|     
T Consensus        97 ~--------------~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g-----  157 (434)
T PHA02874         97 L--------------PIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNG-----  157 (434)
T ss_pred             c--------------hhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCC-----
Confidence            1              233457899999999999999999999999999999999999999999998887765555     


Q ss_pred             HHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHH
Q 035705          422 IAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVE  501 (758)
Q Consensus       422 ~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~  501 (758)
                                                      .||||+|+..++.+++++|++. |++++..+..|.||||+|+..|+.+
T Consensus       158 --------------------------------~tpLh~A~~~~~~~iv~~Ll~~-g~~~n~~~~~g~tpL~~A~~~g~~~  204 (434)
T PHA02874        158 --------------------------------CYPIHIAIKHNFFDIIKLLLEK-GAYANVKDNNGESPLHNAAEYGDYA  204 (434)
T ss_pred             --------------------------------CCHHHHHHHCCcHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHH
Confidence                                            4678888899999999999998 8999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcC-CHHHHHHHHhcCCCC
Q 035705          502 AFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRG-DFDLVHTLVSRCYDV  580 (758)
Q Consensus       502 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~~ga~~  580 (758)
                      ++++|++.|++++.++..|.||||.|+..+. +.+.+|+  .+.+++..|..|+||||+|+..+ +.+++++|+++|+++
T Consensus       205 iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll--~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~  281 (434)
T PHA02874        205 CIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLI--NNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADI  281 (434)
T ss_pred             HHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh-HHHHHHH--cCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCC
Confidence            9999999999999999999999999999765 5566555  46788899999999999999876 899999999999999


Q ss_pred             CCCCCCCCcHHHHHHHcC-cHHHHHHHHhCCCCCCCCCCCC-CcHHHHHHHCCChhh
Q 035705          581 NASDADGYTPLMLAAKSG-HGSVCQLLISSGAKCDIENARN-ETALALARENGNGNE  635 (758)
Q Consensus       581 n~~d~~g~tpL~~A~~~~-~~~iv~~Ll~~gad~~~~d~~g-~t~L~~A~~~~~~~~  635 (758)
                      +.+|..|+||||+|+..+ ..++++.|++.++.++..+..+ .+++..+....+...
T Consensus       282 n~~d~~g~TpL~~A~~~~~~~~~ik~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  338 (434)
T PHA02874        282 SIKDNKGENPIDTAFKYINKDPVIKDIIANAVLIKEADKLKDSDFLEHIEIKDNKEF  338 (434)
T ss_pred             CCCCCCCCCHHHHHHHhCCccHHHHHHHHhcCchhhccccchhHHHHHHHHhccchH
Confidence            999999999999999987 7889999999999887766555 566777666655543

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=3e-42  Score=379.40  Aligned_cols=293  Identities=20%  Similarity=0.238  Sum_probs=270.1

Q ss_pred             HHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcC---CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 035705          318 HHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLG---SAKILRRLISAGCNINSRTAAGETAAMICARYK  394 (758)
Q Consensus       318 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g---~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g  394 (758)
                      ..++..++.++|++|++.|++++.    .+..|.||||+|+..+   +.+++++|+++|+++|.++..|.||||+|+..|
T Consensus        19 ~~~~~~~~~~~v~~Ll~~ga~vn~----~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~   94 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAGADVNF----RGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNA   94 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcCCCccc----CCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC
Confidence            456778899999999999999886    6889999999999999   999999999999999999999999999999999


Q ss_pred             -CHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcC--CHHHHHH
Q 035705          395 -HEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQAN--DVDALKK  471 (758)
Q Consensus       395 -~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~--~~~~v~~  471 (758)
                       ..+++++|+++|++++..+..|.||||+|+..  .....+++++|++.|++++..+..|.||||+|+..+  +.+++++
T Consensus        95 ~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~--~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~  172 (471)
T PHA03095         95 TTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSG--FNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRL  172 (471)
T ss_pred             CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhC--CcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHH
Confidence             59999999999999999999999999999732  345789999999999999999999999999998876  6899999


Q ss_pred             HHHhcCCCCcccCCCCCcHHHHHHHc--CCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCh--hHHHHHHHhhcccc
Q 035705          472 LIEWADVDLDEQDADGFSAAMIAAAA--GHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNG--EVLEQVILEYALEE  547 (758)
Q Consensus       472 Ll~~~~~~~~~~~~~g~t~L~~A~~~--g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--~~v~~ll~~~~~~~  547 (758)
                      |++. |++++..+..|.||||+++..  ++.++++.|+++|++++.+|..|.||||+|+..|+.  .+++ ++...+.++
T Consensus       173 Ll~~-g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~-~ll~~g~di  250 (471)
T PHA03095        173 LIDA-GADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVL-PLLIAGISI  250 (471)
T ss_pred             HHHc-CCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHH-HHHHcCCCC
Confidence            9998 899999999999999999875  788999999999999999999999999999999875  3444 455678999


Q ss_pred             CCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCC
Q 035705          548 GQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENA  618 (758)
Q Consensus       548 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~  618 (758)
                      +..|..|+||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.++++.|+++|++++..+.
T Consensus       251 n~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~~~~~~~  321 (471)
T PHA03095        251 NARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSAETVAA  321 (471)
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999876553

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=2.7e-42  Score=336.30  Aligned_cols=218  Identities=25%  Similarity=0.397  Sum_probs=166.5

Q ss_pred             HHHHHcCCHHHHHhhhcCCCCCcccccceeeccccceeeecccccchhhhhhhcccCCchHHHHHHHcCcHHHHHHHHh-
Q 035705           32 VDAAHVNDVKRANECIGDPFVDVNFVGTVSLRAKKTELVLHDEAAHEVRVVYEEFKTEVTALFLAAHAGNLTLVRKLLS-  110 (758)
Q Consensus        32 ~~A~~~G~~~~v~~LL~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~-  110 (758)
                      ..|++.|++..+..|+.... .                       .++........+|.|||.+||++||.++|++|++ 
T Consensus         9 ~naa~~g~l~~l~~ll~~~s-~-----------------------~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~   64 (615)
T KOG0508|consen    9 INAARDGKLQLLAKLLINSS-N-----------------------EEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEH   64 (615)
T ss_pred             HHHhhhhhHHHHHHHHhCCc-h-----------------------HHHHHHhccccCCCCceeeehhcCcHHHHHHHHHH
Confidence            47899999998888887642 1                       1222223346789999999999999999999999 


Q ss_pred             CCCCCCccc--------ccCcch-hHHhhhChHHHHHHHHhcCCCccccchHHHHHHHcCChhHHHHHHhccCCCCCCCc
Q 035705          111 LGANVNQKL--------FRGYAT-TAAVREDHLEILDLLIKAGACQEACEEALLETSYLGQARPAELLMATDLIRPQVSV  181 (758)
Q Consensus       111 ~ga~~~~~~--------~~g~~l-~~A~~~g~~~iv~~Ll~~ga~~~~~~~~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~  181 (758)
                      .++++....        ..|-|+ -.|+..||++|||+|+++|+++|.                          ....+.
T Consensus        65 ~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~--------------------------tT~TNS  118 (615)
T KOG0508|consen   65 CRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVND--------------------------TTRTNS  118 (615)
T ss_pred             hcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCcccc--------------------------ccccCC
Confidence            488876532        223344 455667888888888888877764                          334456


Q ss_pred             hHHHHHHhcCCHHHHHHHHhCCCCCCcchhhhhhccccccccCCCCchhHHHHhcCCHHHHHHHHHcCCCCccccccCcc
Q 035705          182 HALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAW  261 (758)
Q Consensus       182 t~L~~A~~~g~~~iv~~Ll~~g~d~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~~  261 (758)
                      |||-.||.-|++++||+|+++|+|++..++             .|.|.|++||..|+.+|+++|++.|+|++.+      
T Consensus       119 tPLraACfDG~leivKyLvE~gad~~Ianr-------------hGhTcLmIa~ykGh~~I~qyLle~gADvn~k------  179 (615)
T KOG0508|consen  119 TPLRAACFDGHLEIVKYLVEHGADPEIANR-------------HGHTCLMIACYKGHVDIAQYLLEQGADVNAK------  179 (615)
T ss_pred             ccHHHHHhcchhHHHHHHHHcCCCCccccc-------------CCCeeEEeeeccCchHHHHHHHHhCCCcchh------
Confidence            888888888888888888888888888874             4888888888888888888888888888875      


Q ss_pred             ccccccchhhhhhccccccccccchhhhhhhchHHHHHHHhhccCCCCCCCCchHHHHHHHcCCHHHHHHHHHccCCCCC
Q 035705          262 SWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEF  341 (758)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~  341 (758)
                                                                      +..|+|+||.|+..|++|++++|+++|+.++ 
T Consensus       180 ------------------------------------------------s~kGNTALH~caEsG~vdivq~Ll~~ga~i~-  210 (615)
T KOG0508|consen  180 ------------------------------------------------SYKGNTALHDCAESGSVDIVQLLLKHGAKID-  210 (615)
T ss_pred             ------------------------------------------------cccCchHHHhhhhcccHHHHHHHHhCCceee-
Confidence                                                            3467788888888888888888888887776 


Q ss_pred             CcccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 035705          342 PVQTYSKTELRPIHLAARLGSAKILRRLIS  371 (758)
Q Consensus       342 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  371 (758)
                          .|..|.|||..|+..|+.++|.+|++
T Consensus       211 ----~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  211 ----VDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             ----ecCCCCchHHHHhhhcchHHHHHHhc
Confidence                35678888888888888888888886

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2e-41  Score=373.63  Aligned_cols=274  Identities=24%  Similarity=0.296  Sum_probs=204.1

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH-----HHHcCCHHHHHHHHHCCCCCCCcccCCCCHH
Q 035705          346 YSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMI-----CARYKHEECLKFLASEGADLGLINYAGQCAN  420 (758)
Q Consensus       346 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~-----A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l  420 (758)
                      .+..+.||||.|+..|+.++|++|+++|++++..+..+.||||+     |+..++.+++++|+++|++++..+..|.|||
T Consensus        31 ~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL  110 (480)
T PHA03100         31 SYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPL  110 (480)
T ss_pred             hhcccchhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchh
Confidence            34455556666655555556666665555555555555556655     5555555566666555555555555555555


Q ss_pred             HHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcC--CHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcC
Q 035705          421 SIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQAN--DVDALKKLIEWADVDLDEQDADGFSAAMIAAAAG  498 (758)
Q Consensus       421 ~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~--~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g  498 (758)
                      |+|+.  ...+..+++++|++.|++++..+..|.||||.|+..+  +.+++++|+++ |++++.++..|.||||+|+..|
T Consensus       111 ~~A~~--~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~-g~din~~d~~g~tpL~~A~~~~  187 (480)
T PHA03100        111 LYAIS--KKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDK-GVDINAKNRYGYTPLHIAVEKG  187 (480)
T ss_pred             hHHHh--cccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHC-CCCcccccCCCCCHHHHHHHhC
Confidence            55532  1334555555555555555556666678888888888  89999999998 8999999999999999999999


Q ss_pred             CHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCC--HHHHHHHHhc
Q 035705          499 HVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGD--FDLVHTLVSR  576 (758)
Q Consensus       499 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~--~~~v~~Ll~~  576 (758)
                      +.+++++|+++|++++..+..|.++++.                            .||||.|+..|+  .+++++|+++
T Consensus       188 ~~~iv~~Ll~~ga~~~~~~~~~~~~~~~----------------------------~t~l~~a~~~~~~~~~iv~~Ll~~  239 (480)
T PHA03100        188 NIDVIKFLLDNGADINAGDIETLLFTIF----------------------------ETPLHIAACYNEITLEVVNYLLSY  239 (480)
T ss_pred             CHHHHHHHHHcCCCccCCCCCCCcHHHH----------------------------HhHHHHHHHhCcCcHHHHHHHHHc
Confidence            9999999999999999988888777766                            588888888888  8888888888


Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCccc
Q 035705          577 CYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVK  656 (758)
Q Consensus       577 ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~~~  656 (758)
                      |+++|.+|..|+||||+|+..++.+++++|+++|+|++.+|..|+|||++|+..++.+         +++.|+++|++++
T Consensus       240 g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~---------iv~~Ll~~g~~i~  310 (480)
T PHA03100        240 GVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKE---------IFKLLLNNGPSIK  310 (480)
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHH---------HHHHHHhcCCCHH
Confidence            8888888888888888888888888888888888888888888888888888888875         5567777787777


Q ss_pred             ccc
Q 035705          657 KHT  659 (758)
Q Consensus       657 ~~d  659 (758)
                      ..+
T Consensus       311 ~i~  313 (480)
T PHA03100        311 TII  313 (480)
T ss_pred             HHH
Confidence            644

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.2e-41  Score=374.59  Aligned_cols=291  Identities=20%  Similarity=0.271  Sum_probs=264.8

Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC---CHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccc
Q 035705          355 HLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYK---HEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLG  431 (758)
Q Consensus       355 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g---~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~  431 (758)
                      ..++..++.++|++|+++|++++..+..|.||||+|+..+   +.+++++|+++|++++.++..|.||||+|+..+.   
T Consensus        19 ~~~~~~~~~~~v~~Ll~~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~---   95 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNAT---   95 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC---
Confidence            4566778899999999999999999999999999999998   9999999999999999999999999999965431   


Q ss_pred             hHHHHHHHHHcCCCcccCCCCCCcHHHHHH--HcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcC--CHHHHHHHH
Q 035705          432 FQQAVVDSIRSGNIIQSSNASRFSPLMFVT--QANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAG--HVEAFRLLL  507 (758)
Q Consensus       432 ~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~--~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll  507 (758)
                      ..+++++|++.|++++..+..|.||||+|+  ..++.+++++|++. |++++..+..|.||||+|+..+  +.+++++|+
T Consensus        96 ~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~-gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll  174 (471)
T PHA03095         96 TLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRK-GADVNALDLYGMTPLAVLLKSRNANVELLRLLI  174 (471)
T ss_pred             cHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHH
Confidence            689999999999999999999999999999  56689999999998 8999999999999999999876  689999999


Q ss_pred             hCCCCCCcCCCCCCcHHHHHHHc--CChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCH--HHHHHHHhcCCCCCCC
Q 035705          508 HAGANIKLQNKYGETAITLAELN--RNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDF--DLVHTLVSRCYDVNAS  583 (758)
Q Consensus       508 ~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~--~~v~~Ll~~ga~~n~~  583 (758)
                      ++|++++..+..|.||||+++..  ++.++++.| ...+.+++..|..|+||||+|+..|+.  .+++.|++.|+++|.+
T Consensus       175 ~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~L-l~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~  253 (471)
T PHA03095        175 DAGADVYAVDDRFRSLLHHHLQSFKPRARIVREL-IRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINAR  253 (471)
T ss_pred             HcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHH-HHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCc
Confidence            99999999999999999999875  566777755 567889999999999999999999864  6899999999999999


Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCcccccc
Q 035705          584 DADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHT  659 (758)
Q Consensus       584 d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~~~~~d  659 (758)
                      |..|+||||+|+..|+.+++++|+++|||++.+|..|+||||+|+..++.++         ++.|++++++++..+
T Consensus       254 d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~---------v~~LL~~~~~~~~~~  320 (471)
T PHA03095        254 NRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRA---------VRAALAKNPSAETVA  320 (471)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHH---------HHHHHHhCCCHHHHH
Confidence            9999999999999999999999999999999999999999999999999975         446666666665433

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7e-40  Score=358.51  Aligned_cols=305  Identities=18%  Similarity=0.153  Sum_probs=233.1

Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 035705          309 ILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAM  388 (758)
Q Consensus       309 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~  388 (758)
                      ....+.||||.|+..|+.++|++|+++|++++.    .+..|.||||+||..|+.+++++|++.+.+.+.  ..+.+|++
T Consensus        33 ~~~~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~----~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~--~~~~~~l~  106 (477)
T PHA02878         33 ASLIPFIPLHQAVEARNLDVVKSLLTRGHNVNQ----PDHRDLTPLHIICKEPNKLGMKEMIRSINKCSV--FYTLVAIK  106 (477)
T ss_pred             ccccCcchHHHHHHcCCHHHHHHHHHCCCCCCC----CCCCCCCHHHHHHHCccHhHHHHHHHHHhcccc--ccchhhHH
Confidence            345678899999999999999999999988776    678899999999999999999999988765544  46778999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHH--cCCH
Q 035705          389 ICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQ--ANDV  466 (758)
Q Consensus       389 ~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~--~~~~  466 (758)
                      .|+..++.+++++|+..+.+.....    .. ..                                  +.....  ....
T Consensus       107 ~a~~~~~~ei~~~Ll~~~~~~~~~~----~~-~~----------------------------------~~~~~~~~~~~~  147 (477)
T PHA02878        107 DAFNNRNVEIFKIILTNRYKNIQTI----DL-VY----------------------------------IDKKSKDDIIEA  147 (477)
T ss_pred             HHHHcCCHHHHHHHHhCcccCcccC----cH-HH----------------------------------HhhccchhhHHH
Confidence            9999999999999988755422110    00 00                                  000001  1123


Q ss_pred             HHHHHHHHhcCCCCcccCCC-CCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhcc
Q 035705          467 DALKKLIEWADVDLDEQDAD-GFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYAL  545 (758)
Q Consensus       467 ~~v~~Ll~~~~~~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~  545 (758)
                      +++++|+++ |++++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.++++.|+ +.+.
T Consensus       148 ~iv~~Ll~~-gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll-~~ga  225 (477)
T PHA02878        148 EITKLLLSY-GADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILL-ENGA  225 (477)
T ss_pred             HHHHHHHHc-CCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHH-HcCC
Confidence            577777776 6777777777 777777777777777777777777777777777777777777777777777555 4566


Q ss_pred             ccCCCCCCCchHHHHHHHc-CCHHHHHHHHhcCCCCCCCCC-CCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcH
Q 035705          546 EEGQKGSAGFYALHRAAKR-GDFDLVHTLVSRCYDVNASDA-DGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETA  623 (758)
Q Consensus       546 ~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~n~~d~-~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~  623 (758)
                      +++..|..|.||||+|+.. ++.+++++|+++|+++|.++. .|+||||+|  .++.+++++|+++|+|+|.+|..|+||
T Consensus       226 ~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~Tp  303 (477)
T PHA02878        226 STDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTP  303 (477)
T ss_pred             CCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCH
Confidence            7777778888888888865 689999999999999999886 799999999  578899999999999999999999999


Q ss_pred             HHHHHHCC-ChhhHHHHHHHHHHHHHHhCCCccccccccCCCcc
Q 035705          624 LALARENG-NGNEAENVILDELALTLVLDGTYVKKHTKCGKGSP  666 (758)
Q Consensus       624 L~~A~~~~-~~~~~~~ll~~~~~~~L~~~g~~~~~~d~~g~t~l  666 (758)
                      ||+|+..+ ..++++.++..    ..+..+.+++.++..|.++-
T Consensus       304 L~~A~~~~~~~~~~~~li~~----~~~~~~~~~~~~~~~g~~~n  343 (477)
T PHA02878        304 LSSAVKQYLCINIGRILISN----ICLLKRIKPDIKNSEGFIDN  343 (477)
T ss_pred             HHHHHHHcCccchHHHHHHH----HHHHHhccCcccCcHHHHHH
Confidence            99999754 34555544332    34455677888888887653

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=8.2e-39  Score=338.78  Aligned_cols=444  Identities=14%  Similarity=0.078  Sum_probs=294.0

Q ss_pred             hHHHHHHHcCcHHH--HHHHHhCCCCCCcccccCcch-hHHhhhChH----HHHHHHHhcCCCccccchHHHHHHHcCCh
Q 035705           91 TALFLAAHAGNLTL--VRKLLSLGANVNQKLFRGYAT-TAAVREDHL----EILDLLIKAGACQEACEEALLETSYLGQA  163 (758)
Q Consensus        91 t~L~~A~~~g~~~i--v~~Ll~~ga~~~~~~~~g~~l-~~A~~~g~~----~iv~~Ll~~ga~~~~~~~~l~~A~~~g~~  163 (758)
                      ..|.-.|..=+.+.  .+.|+++|++|-. ..++.|| +.=..+.+.    +++-.|++   .++               
T Consensus         5 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~---~~~---------------   65 (631)
T PHA02792          5 KILYDSCKTFNIDACSAQSLIESGANPLY-EYDGETPLKAYVTKKNNNIKNDVVILLLS---SVD---------------   65 (631)
T ss_pred             hHHHhHhhccchhHHHHHHHHHcCCCccc-ccCCCccHHHHHhhhhhhHHHHHHHHHHh---CCC---------------
Confidence            34444555444444  5788999999877 4566665 544333332    23333333   222               


Q ss_pred             hHHHHHHhccCCCCCCCchHHHH-HHhcCCHHHHHHHHhCCCCCCcchhhhhhccccccccCCCCchhHHHHh-cCCHHH
Q 035705          164 RPAELLMATDLIRPQVSVHALVS-ACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVV-SRQISV  241 (758)
Q Consensus       164 ~iv~~Ll~~~~~~~~~~~t~L~~-A~~~g~~~iv~~Ll~~g~d~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~-~g~~~i  241 (758)
                                 ..+-.+.+++++ |+.+|+.|+|++|+++|+|+|..+             +.+.||+++|+. .++.|+
T Consensus        66 -----------~~n~~~~~~~~~~~s~n~~lElvk~LI~~GAdvN~~~-------------n~~~~~l~ya~~~~~~~ei  121 (631)
T PHA02792         66 -----------YKNINDFDIFEYLCSDNIDIELLKLLISKGLEINSIK-------------NGINIVEKYATTSNPNVDV  121 (631)
T ss_pred             -----------cCccCCccHHHHHHHhcccHHHHHHHHHcCCCccccc-------------CCCCcceeEeecCCCChHH
Confidence                       234445667765 556899999999999999999988             558899999965 699999


Q ss_pred             HHHHHHcCCCCccccccCccccccccchhhhhhccccccccccchhhhhhhchHHHHHHHhhccCCCCCCCCchHHHHHH
Q 035705          242 VRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAI  321 (758)
Q Consensus       242 v~~Ll~~ga~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~g~t~L~~A~  321 (758)
                      +++|+++||++...+.                                                      .|.||++.-+
T Consensus       122 vk~Ll~~Gad~~~~~~------------------------------------------------------~g~~~~~~~~  147 (631)
T PHA02792        122 FKLLLDKGIPTCSNIQ------------------------------------------------------YGYKIIIEQI  147 (631)
T ss_pred             HHHHHHCCCCcccccc------------------------------------------------------cCcchhhhhc
Confidence            9999999999876543                                                      5566665544


Q ss_pred             HcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcC-------CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 035705          322 LCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLG-------SAKILRRLISAGCNINSRTAAGETAAMICARYK  394 (758)
Q Consensus       322 ~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g-------~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g  394 (758)
                      .....--.+--.+ .-+.+..++..+..|.||||+|+.++       +.|+++.|+++|++++..|..|.||||+|+.+.
T Consensus       148 ~~~~~~~~~~~~~-~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~  226 (631)
T PHA02792        148 TRAEYYNWDDELD-DYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKC  226 (631)
T ss_pred             ccccccchhhhcc-ccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcc
Confidence            3211100000000 00112223346777888888888888       788888888888888888888888888888888


Q ss_pred             --CHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccc----cchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHH
Q 035705          395 --HEECLKFLASEGADLGLINYAGQCANSIAKSSRWT----LGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDA  468 (758)
Q Consensus       395 --~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~----~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~  468 (758)
                        ..|++++|++.--+.    ......|.--......    .-...++..|++.+..-+        .+.........+.
T Consensus       227 ~i~~ei~~~L~~~~~~~----~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~--------i~~~~~~~~~~~~  294 (631)
T PHA02792        227 DIKREIFDALFDSNYSG----NELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFY--------ILELCNSLRNNII  294 (631)
T ss_pred             cchHHHHHHHHhccccc----cchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccc--------hhhhhhhhhhhhH
Confidence              788888888741111    1112222222222221    123446777776553111        1111111111222


Q ss_pred             HHHHHHhcCCCCcccCCCCCcHHHHHHHcC--CHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccc
Q 035705          469 LKKLIEWADVDLDEQDADGFSAAMIAAAAG--HVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALE  546 (758)
Q Consensus       469 v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~  546 (758)
                      +..++.+.. +      .-+..||.=..++  +.+++++|+++|+++..  .....+++.|+..|+.++++.|+. .|++
T Consensus       295 ~~~~~~~~~-~------~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r--~~~~n~~~~Aa~~gn~eIVelLIs-~GAD  364 (631)
T PHA02792        295 ISSILKRYT-D------SIQDLLSEYVSYHTVYINVIKCMIDEGATLYR--FKHINKYFQKFDNRDPKVVEYILK-NGNV  364 (631)
T ss_pred             HHHHHHHHh-H------HHHHHHHHHHhcCCccHHHHHHHHHCCCcccc--CCcchHHHHHHHcCCHHHHHHHHH-cCCc
Confidence            322322210 0      1112344444444  67888888888888752  225566888888888888886665 4677


Q ss_pred             cCCCCCCC--chHHHHHHHcCCH---HHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCC
Q 035705          547 EGQKGSAG--FYALHRAAKRGDF---DLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNE  621 (758)
Q Consensus       547 ~~~~~~~g--~t~L~~A~~~g~~---~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~  621 (758)
                      ++..|..|  .||||.|+.....   +++++|+++|+|+|.+|..|+||||+|+..++.+++++|+++|++++.+|..|+
T Consensus       365 IN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~  444 (631)
T PHA02792        365 VVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGS  444 (631)
T ss_pred             hhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCC
Confidence            87777664  5899988776654   468999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHH---CCChhhHHHHHHHHHHHHHHhCCCccc
Q 035705          622 TALALARE---NGNGNEAENVILDELALTLVLDGTYVK  656 (758)
Q Consensus       622 t~L~~A~~---~~~~~~~~~ll~~~~~~~L~~~g~~~~  656 (758)
                      ||||+|+.   .+..++++.+.  ++++.|+++|.++.
T Consensus       445 TpL~~A~~~~~~~~~~i~~~~~--~il~lLLs~~p~i~  480 (631)
T PHA02792        445 TCIGICVILAHACIPEIAELYI--KILEIILSKLPTIE  480 (631)
T ss_pred             CHHHHHHHHHhcccHHHHHHHH--HHHHHHHhcCCChh
Confidence            99999975   44555555443  58889999997765

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.1e-39  Score=357.58  Aligned_cols=283  Identities=24%  Similarity=0.325  Sum_probs=227.7

Q ss_pred             CHHHHHHHHhCCCCCCcchhhhhhccccccccCCCCchhHHHHhcCCHHHHHHHHHcCCCCccccccCccccccccchhh
Q 035705          192 FVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWDMDTGEEL  271 (758)
Q Consensus       192 ~~~iv~~Ll~~g~d~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~~~~~~~~~~~~  271 (758)
                      ..++++++++.+-..+..+             ..+.||||.|+..|+.++|++|+++|++++..                
T Consensus        14 ~~~~~~~~~~~~~~~~~~~-------------~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~----------------   64 (480)
T PHA03100         14 KVKNIKYIIMEDDLNDYSY-------------KKPVLPLYLAKEARNIDVVKILLDNGADINSS----------------   64 (480)
T ss_pred             HHHHHHHHHhcCccchhhh-------------cccchhhhhhhccCCHHHHHHHHHcCCCCCCc----------------
Confidence            3567788887764444444             34888999999999999999999998888764                


Q ss_pred             hhhccccccccccchhhhhhhchHHHHHHHhhccCCCCCCCCchHHHH-----HHHcCCHHHHHHHHHccCCCCCCcccC
Q 035705          272 RVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHH-----AILCNNARAVELLLNCAVDKEFPVQTY  346 (758)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~g~t~L~~-----A~~~g~~~~v~~Ll~~g~~~~~~~~~~  346 (758)
                                                            +..+.||||.     |+..++.+++++|++.|++++.    .
T Consensus        65 --------------------------------------~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~----~  102 (480)
T PHA03100         65 --------------------------------------TKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNA----P  102 (480)
T ss_pred             --------------------------------------cccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCC----C
Confidence                                                  3356788888     8888999999999988888765    6


Q ss_pred             CCCCCcHHHHHH--HcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHHCCCCCCCcccCCCCHHHH
Q 035705          347 SKTELRPIHLAA--RLGSAKILRRLISAGCNINSRTAAGETAAMICARYK--HEECLKFLASEGADLGLINYAGQCANSI  422 (758)
Q Consensus       347 ~~~g~t~L~~A~--~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g--~~~iv~~Ll~~g~~~~~~~~~g~t~l~~  422 (758)
                      +..|.||||+|+  ..|+.+++++|+++|++++..+..|.||||+|+..+  +.+++++|+++|++++..+..|      
T Consensus       103 d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g------  176 (480)
T PHA03100        103 DNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYG------  176 (480)
T ss_pred             CCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCC------
Confidence            788888999998  888899999999988888888888889999998888  8888888888888877665544      


Q ss_pred             HHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCC------CcHHHHHHH
Q 035705          423 AKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADG------FSAAMIAAA  496 (758)
Q Consensus       423 a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g------~t~L~~A~~  496 (758)
                                                     .||||+|+..|+.+++++|+++ |++++..+..|      .||||.|+.
T Consensus       177 -------------------------------~tpL~~A~~~~~~~iv~~Ll~~-ga~~~~~~~~~~~~~~~~t~l~~a~~  224 (480)
T PHA03100        177 -------------------------------YTPLHIAVEKGNIDVIKFLLDN-GADINAGDIETLLFTIFETPLHIAAC  224 (480)
T ss_pred             -------------------------------CCHHHHHHHhCCHHHHHHHHHc-CCCccCCCCCCCcHHHHHhHHHHHHH
Confidence                                           4677777888888888888887 78888888877      666777777


Q ss_pred             cCC--HHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHH
Q 035705          497 AGH--VEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLV  574 (758)
Q Consensus       497 ~g~--~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  574 (758)
                      .++  .+++++|++.|++++.+|.                                  .|.||||+|+..|+.+++++|+
T Consensus       225 ~~~~~~~iv~~Ll~~g~din~~d~----------------------------------~g~TpL~~A~~~~~~~iv~~Ll  270 (480)
T PHA03100        225 YNEITLEVVNYLLSYGVPINIKDV----------------------------------YGFTPLHYAVYNNNPEFVKYLL  270 (480)
T ss_pred             hCcCcHHHHHHHHHcCCCCCCCCC----------------------------------CCCCHHHHHHHcCCHHHHHHHH
Confidence            766  6777777776666665554                                  5556677777788888889999


Q ss_pred             hcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCC
Q 035705          575 SRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIEN  617 (758)
Q Consensus       575 ~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d  617 (758)
                      ++|+|+|.+|..|.||||+|+..++.+++++|+++|++++..+
T Consensus       271 ~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~i~~i~  313 (480)
T PHA03100        271 DLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKTII  313 (480)
T ss_pred             HcCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCHHHHH
Confidence            9999999999999999999999999999999999999887654

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1e-38  Score=350.17  Aligned_cols=280  Identities=20%  Similarity=0.238  Sum_probs=236.9

Q ss_pred             cCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHc--CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC------
Q 035705          323 CNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARL--GSAKILRRLISAGCNINSRTAAGETAAMICARYK------  394 (758)
Q Consensus       323 ~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~--g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g------  394 (758)
                      ..+.++|++|+++|++++.    . ..|.||||.++..  ++.++|++|+++|+++|.++ .+.||||.|+.++      
T Consensus        13 ~~~~~~v~~LL~~GadvN~----~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~~~~~   86 (494)
T PHA02989         13 TVDKNALEFLLRTGFDVNE----E-YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETPLCAVLRNREITSNK   86 (494)
T ss_pred             cCcHHHHHHHHHcCCCccc----c-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CCCCcHHHHHhccCcchhh
Confidence            4689999999999999886    3 5688998776554  36899999999999999876 5799999998754      


Q ss_pred             CHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCc-ccCCCCCCcHHHHHHHc--CCHHHHHH
Q 035705          395 HEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNII-QSSNASRFSPLMFVTQA--NDVDALKK  471 (758)
Q Consensus       395 ~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~-~~~~~~~~t~L~~a~~~--~~~~~v~~  471 (758)
                      +.+++++|+++|++++.++..|.||||.|+... ..+..+++++|++.|+++ +..+..|+||||+|+..  ++.+++++
T Consensus        87 ~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~-~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~  165 (494)
T PHA02989         87 IKKIVKLLLKFGADINLKTFNGVSPIVCFIYNS-NINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKI  165 (494)
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhc-ccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHH
Confidence            478999999999999999999999999886543 235789999999999999 78999999999998764  58899999


Q ss_pred             HHHhcCCCCcc-cCCCCCcHHHHHHHcC----CHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcC------ChhHHHHHH
Q 035705          472 LIEWADVDLDE-QDADGFSAAMIAAAAG----HVEAFRLLLHAGANIKLQNKYGETAITLAELNR------NGEVLEQVI  540 (758)
Q Consensus       472 Ll~~~~~~~~~-~~~~g~t~L~~A~~~g----~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~------~~~~v~~ll  540 (758)
                      |+++ |++++. .+..|.||||.|+..+    +.+++++|+++|++++..+..+.||||.++..+      ..+++++++
T Consensus       166 Ll~~-Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~  244 (494)
T PHA02989        166 LLSF-GVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFIL  244 (494)
T ss_pred             HHHc-CCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHH
Confidence            9998 899998 6789999999987764    899999999999999999999999999876543      455666443


Q ss_pred             HhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCC
Q 035705          541 LEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAK  612 (758)
Q Consensus       541 ~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad  612 (758)
                       . +.+++..|..|+||||+|+..|+.+++++|+++|+|+|.+|..|+||||+|+..++.++++.|++.+++
T Consensus       245 -~-~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p~  314 (494)
T PHA02989        245 -K-YIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQLKPG  314 (494)
T ss_pred             -h-CCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Confidence             2 478888888888888888888888888888888888888888888888888888888888888887654

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.6e-38  Score=347.71  Aligned_cols=297  Identities=18%  Similarity=0.145  Sum_probs=228.9

Q ss_pred             chhhhhhhchHHHHHHHhhcc-CCC-CCCCCchHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCC
Q 035705          285 WCAVEYFESSGAILHMLFQHI-SPN-ILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGS  362 (758)
Q Consensus       285 ~~~~~~~~~~~~~~~~ll~~~-~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~  362 (758)
                      +...+...+..+++++|++.. +++ .+..|.||||+|+..|+.++++.|++.+.+...      ..+.+|++.|+..++
T Consensus        40 PLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~------~~~~~~l~~a~~~~~  113 (477)
T PHA02878         40 PLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSV------FYTLVAIKDAFNNRN  113 (477)
T ss_pred             hHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhcccc------ccchhhHHHHHHcCC
Confidence            344556678889999999983 444 478899999999999999999999998766543      467899999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHH
Q 035705          363 AKILRRLISAGCNINSRTAAGETAAMICARYK--HEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSI  440 (758)
Q Consensus       363 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g--~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll  440 (758)
                      .+++++|+..+.+......  ...+......+  ..+++++|+++|++++                              
T Consensus       114 ~ei~~~Ll~~~~~~~~~~~--~~~~~~~~~~~~~~~~iv~~Ll~~gadin------------------------------  161 (477)
T PHA02878        114 VEIFKIILTNRYKNIQTID--LVYIDKKSKDDIIEAEITKLLLSYGADIN------------------------------  161 (477)
T ss_pred             HHHHHHHHhCcccCcccCc--HHHHhhccchhhHHHHHHHHHHHcCCCCC------------------------------
Confidence            9999999988654322111  01111111111  1235555555555554                              


Q ss_pred             HcCCCcccCCCC-CCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCC
Q 035705          441 RSGNIIQSSNAS-RFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKY  519 (758)
Q Consensus       441 ~~g~~~~~~~~~-~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~  519 (758)
                             ..+.. |.||||+|+..|+.+++++|++. |++++.++..|.||||.|+..|+.+++++|++.|++++.+|..
T Consensus       162 -------~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~-gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~  233 (477)
T PHA02878        162 -------MKDRHKGNTALHYATENKDQRLTELLLSY-GANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKC  233 (477)
T ss_pred             -------ccCCCCCCCHHHHHHhCCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCC
Confidence                   44444 66788888888888888888887 7888888888889999998888889999999888888888888


Q ss_pred             CCcHHHHHHHc-CChhHHHHHHHhhccccCCCCC-CCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHc
Q 035705          520 GETAITLAELN-RNGEVLEQVILEYALEEGQKGS-AGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKS  597 (758)
Q Consensus       520 g~t~L~~A~~~-~~~~~v~~ll~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~  597 (758)
                      |.||||+|+.. ++.++++.|+ +.+.+++..+. .|.||||+|  .++.+++++|+++|+|+|..|..|+||||+|+..
T Consensus       234 g~TpLh~A~~~~~~~~iv~~Ll-~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~~  310 (477)
T PHA02878        234 GNTPLHISVGYCKDYDILKLLL-EHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSSAVKQ  310 (477)
T ss_pred             CCCHHHHHHHhcCCHHHHHHHH-HcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHH
Confidence            89999988875 6788887555 55677777764 799999999  5778999999999999999999999999999975


Q ss_pred             C-cHHHHHHHHhC-----CCCCCCCCCCCCcHHHHHHHC
Q 035705          598 G-HGSVCQLLISS-----GAKCDIENARNETALALAREN  630 (758)
Q Consensus       598 ~-~~~iv~~Ll~~-----gad~~~~d~~g~t~L~~A~~~  630 (758)
                      + ..+++++|+.+     +++++.++..|.++-..++..
T Consensus       311 ~~~~~~~~~li~~~~~~~~~~~~~~~~~g~~~n~~~i~~  349 (477)
T PHA02878        311 YLCINIGRILISNICLLKRIKPDIKNSEGFIDNMDCITS  349 (477)
T ss_pred             cCccchHHHHHHHHHHHHhccCcccCcHHHHHHHHHHhc
Confidence            4 46777777654     578888888888776555543

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=2.4e-39  Score=315.80  Aligned_cols=198  Identities=21%  Similarity=0.284  Sum_probs=172.5

Q ss_pred             CCCCCchHHHHHHhcCCHHHHHHHHh-CCCCCCcchhhhhhccccccccCCCCchhHHHHhcCCHHHHHHHHHcCCCCcc
Q 035705          176 RPQVSVHALVSACFRGFVNVVDTLIK-CGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDI  254 (758)
Q Consensus       176 ~~~~~~t~L~~A~~~g~~~iv~~Ll~-~g~d~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~  254 (758)
                      ....|.|||..||++||.++|++|++ .++++.......+.     -....|-+||-.|+..||+++|+.|+++|+++|.
T Consensus        38 ~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FD-----ge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~  112 (615)
T KOG0508|consen   38 EVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFD-----GETIEGAPPLWAASAAGHLEVVKLLLRRGASVND  112 (615)
T ss_pred             cccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeC-----CcccCCCchhhHHhccCcHHHHHHHHHhcCcccc
Confidence            34557899999999999999999999 57776654322110     1114588999999999999999999999999996


Q ss_pred             ccccCccccccccchhhhhhccccccccccchhhhhhhchHHHHHHHhhccCCCCCCCCchHHHHHHHcCCHHHHHHHHH
Q 035705          255 KVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCNNARAVELLLN  334 (758)
Q Consensus       255 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  334 (758)
                      ..                                                      ....|||-.||..|++++||+|++
T Consensus       113 tT------------------------------------------------------~TNStPLraACfDG~leivKyLvE  138 (615)
T KOG0508|consen  113 TT------------------------------------------------------RTNSTPLRAACFDGHLEIVKYLVE  138 (615)
T ss_pred             cc------------------------------------------------------ccCCccHHHHHhcchhHHHHHHHH
Confidence            52                                                      345699999999999999999999


Q ss_pred             ccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCccc
Q 035705          335 CAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINY  414 (758)
Q Consensus       335 ~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~  414 (758)
                      +|+|+++    .+..|.|.||+||..|+.+|+++|++.|+|+|.++..|+|+||.|++.|+.+++++|+++|+.++. |.
T Consensus       139 ~gad~~I----anrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~-d~  213 (615)
T KOG0508|consen  139 HGADPEI----ANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDV-DG  213 (615)
T ss_pred             cCCCCcc----cccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceeee-cC
Confidence            9999987    799999999999999999999999999999999999999999999999999999999999998874 55


Q ss_pred             CCCCHHHHHHhcccccchHHHHHHHHH
Q 035705          415 AGQCANSIAKSSRWTLGFQQAVVDSIR  441 (758)
Q Consensus       415 ~g~t~l~~a~~~~~~~~~~~~~~~ll~  441 (758)
                      .|.|||..|    ...++.++++.|++
T Consensus       214 ~GmtPL~~A----a~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  214 HGMTPLLLA----AVTGHTDIVERLLQ  236 (615)
T ss_pred             CCCchHHHH----hhhcchHHHHHHhc
Confidence            699999999    45578889999986

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.5e-38  Score=348.96  Aligned_cols=279  Identities=22%  Similarity=0.261  Sum_probs=247.9

Q ss_pred             cCCHHHHHHHHhCCCCCCcchhhhhhccccccccCCCCchhHHHHhc--CCHHHHHHHHHcCCCCccccccCcccccccc
Q 035705          190 RGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVS--RQISVVRLLLQAGVKMDIKVRMGAWSWDMDT  267 (758)
Q Consensus       190 ~g~~~iv~~Ll~~g~d~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~--g~~~iv~~Ll~~ga~~~~~~~~g~~~~~~~~  267 (758)
                      ..+.++|++|+++|+|+|..+              .|.|||+.++..  ++.++|++|+++||+++.++           
T Consensus        13 ~~~~~~v~~LL~~GadvN~~~--------------~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-----------   67 (494)
T PHA02989         13 TVDKNALEFLLRTGFDVNEEY--------------RGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-----------   67 (494)
T ss_pred             cCcHHHHHHHHHcCCCccccc--------------CCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC-----------
Confidence            577999999999999999874              388998765544  37999999999999998642           


Q ss_pred             chhhhhhccccccccccchhhhhhhchHHHHHHHhhccCCCCCCCCchHHHHHHHcC------CHHHHHHHHHccCCCCC
Q 035705          268 GEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCN------NARAVELLLNCAVDKEF  341 (758)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~g~t~L~~A~~~g------~~~~v~~Ll~~g~~~~~  341 (758)
                                                                  .+.||||.|+..+      +.+++++|+++|++++.
T Consensus        68 --------------------------------------------~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~  103 (494)
T PHA02989         68 --------------------------------------------YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINL  103 (494)
T ss_pred             --------------------------------------------CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCC
Confidence                                                        3579999988754      57899999999999887


Q ss_pred             CcccCCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCC-CCCCCCCCcHHHHHHHc--CCHHHHHHHHHCCCCCCC-ccc
Q 035705          342 PVQTYSKTELRPIHLAARL---GSAKILRRLISAGCNI-NSRTAAGETAAMICARY--KHEECLKFLASEGADLGL-INY  414 (758)
Q Consensus       342 ~~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~--g~~~iv~~Ll~~g~~~~~-~~~  414 (758)
                          ++..|.||||.|+..   |+.+++++|+++|+++ +.+|..|+||||+|+..  ++.+++++|+++|++++. .+.
T Consensus       104 ----~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~  179 (494)
T PHA02989        104 ----KTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSL  179 (494)
T ss_pred             ----CCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccc
Confidence                788999999988765   6799999999999999 79999999999998764  589999999999999998 688


Q ss_pred             CCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHc------CCHHHHHHHHHhcCCCCcccCCCCC
Q 035705          415 AGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQA------NDVDALKKLIEWADVDLDEQDADGF  488 (758)
Q Consensus       415 ~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~------~~~~~v~~Ll~~~~~~~~~~~~~g~  488 (758)
                      .|.||+|+++......+..+++++|++.|++++..+..+.|+||.++..      +..+++++|+.  ++++|.+|..|.
T Consensus       180 ~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~--~advn~~d~~G~  257 (494)
T PHA02989        180 YGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILK--YIKINKKDKKGF  257 (494)
T ss_pred             cCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHh--CCCCCCCCCCCC
Confidence            9999999998887778899999999999999999999999999987654      35678887776  689999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhh
Q 035705          489 SAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEY  543 (758)
Q Consensus       489 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~  543 (758)
                      ||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+..|+.++++.|+...
T Consensus       258 TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~~  312 (494)
T PHA02989        258 NPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQLK  312 (494)
T ss_pred             CHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999888653

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.7e-38  Score=314.66  Aligned_cols=235  Identities=17%  Similarity=0.163  Sum_probs=175.6

Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHH
Q 035705          361 GSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSI  440 (758)
Q Consensus       361 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll  440 (758)
                      ++.+++++|+++|++  ..|..|+||||+|+..|+.+++++|+++|++++..+                           
T Consensus        10 ~~~~~~~~Lis~~a~--~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d---------------------------   60 (284)
T PHA02791         10 KSKQLKSFLSSKDAF--KADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE---------------------------   60 (284)
T ss_pred             CHHHHHHHHHhCCCC--CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC---------------------------
Confidence            456666666666653  456666667777666666666666666666554321                           


Q ss_pred             HcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCC
Q 035705          441 RSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYG  520 (758)
Q Consensus       441 ~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g  520 (758)
                                  +.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|+++|++++.++..|
T Consensus        61 ------------~~TpLh~Aa~~g~~eiV~lLL~~-Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g  127 (284)
T PHA02791         61 ------------NEFPLHQAATLEDTKIVKILLFS-GMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTG  127 (284)
T ss_pred             ------------CCCHHHHHHHCCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCC
Confidence                        23566666666777777777765 67777777778888888888888888888888888887777776


Q ss_pred             C-cHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcH-HHHHHHcC
Q 035705          521 E-TAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTP-LMLAAKSG  598 (758)
Q Consensus       521 ~-t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tp-L~~A~~~~  598 (758)
                      + ||||+|+..|+.+++++|+.+.+...+.  ..|.||||+|+..|+.+++++|+++|+++|.+|..|.|| ||+|+..|
T Consensus       128 ~~TpL~~Aa~~g~~eivk~LL~~~~~~~d~--~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~  205 (284)
T PHA02791        128 WKTSFYHAVMLNDVSIVSYFLSEIPSTFDL--AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNK  205 (284)
T ss_pred             CcHHHHHHHHcCCHHHHHHHHhcCCccccc--ccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcC
Confidence            4 7888888888888888777654322111  257899999999999999999999999999999999987 99999999


Q ss_pred             cHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCcc
Q 035705          599 HGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYV  655 (758)
Q Consensus       599 ~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~~  655 (758)
                      +.++|++|+++|+++|.+|..| |||      +..+         ++++|+++.++.
T Consensus       206 ~~e~v~lLl~~Ga~in~~~~~~-~~l------~~~e---------~~~~ll~~~~~~  246 (284)
T PHA02791        206 DLEMLQALFKYDINIYSVNLEN-VLL------DDAE---------IAKMIIEKHVEY  246 (284)
T ss_pred             CHHHHHHHHHCCCCCccCcccC-ccC------CCHH---------HHHHHHHhhhhh
Confidence            9999999999999999999854 666      5554         566666666554

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.3e-37  Score=325.74  Aligned_cols=405  Identities=13%  Similarity=0.054  Sum_probs=295.7

Q ss_pred             cCCchHHHHHHHcCcH-HHHHHHHhCCCCCCcccccCcch--hHHhhhChHHHHHHHHhcCCCccccchHHHHHHHcCCh
Q 035705           87 KTEVTALFLAAHAGNL-TLVRKLLSLGANVNQKLFRGYAT--TAAVREDHLEILDLLIKAGACQEACEEALLETSYLGQA  163 (758)
Q Consensus        87 ~~g~t~L~~A~~~g~~-~iv~~Ll~~ga~~~~~~~~g~~l--~~A~~~g~~~iv~~Ll~~ga~~~~~~~~l~~A~~~g~~  163 (758)
                      .+|.||||.=....+. .-++.++..|-.++..+.+|+.+  ..|+.+|++++|++|+++||+++.              
T Consensus        35 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~s~n~~lElvk~LI~~GAdvN~--------------  100 (631)
T PHA02792         35 YDGETPLKAYVTKKNNNIKNDVVILLLSSVDYKNINDFDIFEYLCSDNIDIELLKLLISKGLEINS--------------  100 (631)
T ss_pred             cCCCccHHHHHhhhhhhHHHHHHHHHHhCCCcCccCCccHHHHHHHhcccHHHHHHHHHcCCCccc--------------
Confidence            5777999977655553 33667777788899888888865  689999999999999999999985              


Q ss_pred             hHHHHHHhccCCCCCCCchHHHHHHh-cCCHHHHHHHHhCCCCCCcchhhhhhccccccccCCCCchhHHHHhcCC-HHH
Q 035705          164 RPAELLMATDLIRPQVSVHALVSACF-RGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQ-ISV  241 (758)
Q Consensus       164 ~iv~~Ll~~~~~~~~~~~t~L~~A~~-~g~~~iv~~Ll~~g~d~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~-~~i  241 (758)
                                  .++.+.+|+++|+. .++.|++++|+++|+|+++.+             ..|.|||+.-+.... .+.
T Consensus       101 ------------~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~-------------~~g~~~~~~~~~~~~~~~~  155 (631)
T PHA02792        101 ------------IKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNI-------------QYGYKIIIEQITRAEYYNW  155 (631)
T ss_pred             ------------ccCCCCcceeEeecCCCChHHHHHHHHCCCCccccc-------------ccCcchhhhhcccccccch
Confidence                        34457889999966 699999999999999987766             469999886654321 000


Q ss_pred             HHHHHHc--CCCCccccccCccccccccchhhhhhccccccccccchhhhhhhchHHHHHHHhhccCCCCCCCCchHHHH
Q 035705          242 VRLLLQA--GVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHH  319 (758)
Q Consensus       242 v~~Ll~~--ga~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~g~t~L~~  319 (758)
                      -+.+-+.  |..++                                                      ..+..|.||||+
T Consensus       156 ~~~~~~~~~~~~i~------------------------------------------------------~~~~~g~t~L~~  181 (631)
T PHA02792        156 DDELDDYDYDYTTD------------------------------------------------------YDDRMGKTVLYY  181 (631)
T ss_pred             hhhccccccccccc------------------------------------------------------cCCCCCCchHHH
Confidence            0000000  00011                                                      135679999999


Q ss_pred             HHHcC-------CHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 035705          320 AILCN-------NARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLG--SAKILRRLISAGCNINSRTAAGETAAMIC  390 (758)
Q Consensus       320 A~~~g-------~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  390 (758)
                      |+..+       +.++++.|+++|++++.    .+..|.||||+|+.+.  +.|++++|++..-+.    ..-+..|.--
T Consensus       182 ~i~~~s~~~~~~~~~v~k~Li~~g~~~~~----~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~----~~~~~~l~~y  253 (631)
T PHA02792        182 YIITRSQDGYATSLDVINYLISHEKEMRY----YTYREHTTLYYYVDKCDIKREIFDALFDSNYSG----NELMNILSNY  253 (631)
T ss_pred             HHhhCCcccccCCHHHHHHHHhCCCCcCc----cCCCCChHHHHHHHcccchHHHHHHHHhccccc----cchHhHHHHH
Confidence            99999       89999999999999886    7888999999999999  899999999841111    1112233322


Q ss_pred             HH--c----C--CHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHH
Q 035705          391 AR--Y----K--HEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQ  462 (758)
Q Consensus       391 ~~--~----g--~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~  462 (758)
                      .+  .    .  +..+|..|++.+-.-+..         .++.+ +. ....+...|.+.. +      .-+..||.-..
T Consensus       254 ~~~~~~~~~~~id~~iv~~ll~~~~~~~i~---------~~~~~-~~-~~~~~~~~~~~~~-~------~~q~~l~~Yl~  315 (631)
T PHA02792        254 LRKQYRNKNHKIDNYIVDKLLSGHDTFYIL---------ELCNS-LR-NNIIISSILKRYT-D------SIQDLLSEYVS  315 (631)
T ss_pred             HHHHhccCccCccHHHHHHHHhCCCccchh---------hhhhh-hh-hhhHHHHHHHHHh-H------HHHHHHHHHHh
Confidence            21  1    1  244899999875532221         01000 00 0111111111111 0      01124555556


Q ss_pred             cC--CHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCC--CcHHHHHHHcCChhH---
Q 035705          463 AN--DVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYG--ETAITLAELNRNGEV---  535 (758)
Q Consensus       463 ~~--~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g--~t~L~~A~~~~~~~~---  535 (758)
                      .+  +.+++++|++. |+++..  .....+++.|+..|+.++|++|+++|++++.+|..|  .||||+|+.....++   
T Consensus       316 ~~~v~ieiIK~LId~-Ga~~~r--~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~I  392 (631)
T PHA02792        316 YHTVYINVIKCMIDE-GATLYR--FKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSI  392 (631)
T ss_pred             cCCccHHHHHHHHHC-CCcccc--CCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHH
Confidence            65  67999999998 788752  235667999999999999999999999999998775  699999887766553   


Q ss_pred             HHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH---c-------CcHHHHHH
Q 035705          536 LEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAK---S-------GHGSVCQL  605 (758)
Q Consensus       536 v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~---~-------~~~~iv~~  605 (758)
                      ++ ++...+++++..|..|.||||+|+..++.+++++|+++|+++|.+|..|+||||+|+.   .       ...+++++
T Consensus       393 lk-lLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~l  471 (631)
T PHA02792        393 LK-LCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEI  471 (631)
T ss_pred             HH-HHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            34 4567788999999999999999999999999999999999999999999999999976   2       23567999


Q ss_pred             HHhCCCCCC
Q 035705          606 LISSGAKCD  614 (758)
Q Consensus       606 Ll~~gad~~  614 (758)
                      |+++|+++.
T Consensus       472 LLs~~p~i~  480 (631)
T PHA02792        472 ILSKLPTIE  480 (631)
T ss_pred             HHhcCCChh
Confidence            999998865

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.1e-36  Score=333.61  Aligned_cols=286  Identities=16%  Similarity=0.180  Sum_probs=229.6

Q ss_pred             CHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHH--cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc-----CCHH
Q 035705          325 NARAVELLLNCAVDKEFPVQTYSKTELRPIHLAAR--LGSAKILRRLISAGCNINSRTAAGETAAMICARY-----KHEE  397 (758)
Q Consensus       325 ~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-----g~~~  397 (758)
                      ..+.|+.|++.+. ++.     ...+.|+++.+..  .++.++|++|+++|+++|..+..|.||||.|+.+     +..+
T Consensus        17 ~~~~v~~ll~~~~-~~~-----~~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~   90 (489)
T PHA02798         17 KLSTVKLLIKSCN-PNE-----IVNEYSIFQKYLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLD   90 (489)
T ss_pred             cHHHHHHHHhcCC-hhh-----hcccchHHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHH
Confidence            4567777776542 222     1345566553333  3467778888888888887777788888777653     5577


Q ss_pred             HHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCC---HHHHHHHHH
Q 035705          398 CLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQAND---VDALKKLIE  474 (758)
Q Consensus       398 iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~---~~~v~~Ll~  474 (758)
                      ++++|+++|++++.++..|.||||+|+..+. .+..+++++|++.|++++..+..|.||||+|++.++   .+++++|++
T Consensus        91 iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~-~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~  169 (489)
T PHA02798         91 IVKILIENGADINKKNSDGETPLYCLLSNGY-INNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLE  169 (489)
T ss_pred             HHHHHHHCCCCCCCCCCCcCcHHHHHHHcCC-cChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHH
Confidence            8888888888888888788888887765432 256778888888888888888888899999999887   999999999


Q ss_pred             hcCCCCcccC-CCCCcHHHHHHHc----CCHHHHHHHHhCCCCCCcCCCCCCcHHH-------HHHHcCChhHHHHHHHh
Q 035705          475 WADVDLDEQD-ADGFSAAMIAAAA----GHVEAFRLLLHAGANIKLQNKYGETAIT-------LAELNRNGEVLEQVILE  542 (758)
Q Consensus       475 ~~~~~~~~~~-~~g~t~L~~A~~~----g~~~~v~~Ll~~g~~~~~~~~~g~t~L~-------~A~~~~~~~~v~~ll~~  542 (758)
                      . |++++.++ ..|.||||.++..    ++.+++++|+++|++++..+..|.++++       .+...++.+++..|+. 
T Consensus       170 ~-gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~-  247 (489)
T PHA02798        170 K-GVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS-  247 (489)
T ss_pred             h-CCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHh-
Confidence            8 89999885 5789999998764    4799999999999999999999999876       2344566777776543 


Q ss_pred             hccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCC
Q 035705          543 YALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARN  620 (758)
Q Consensus       543 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g  620 (758)
                       +.+++.+|..|+||||+|+..|+.+++++|+++|+|+|.+|..|+||||+|+..++.++++.|+++|++++......
T Consensus       248 -~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~~~~i~~~~  324 (489)
T PHA02798        248 -YIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENESKFIFNSILNKKPNKNTISYTY  324 (489)
T ss_pred             -cCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcCcHHHHHHHHccCCCHHHHHHHH
Confidence             48999999999999999999999999999999999999999999999999999999999999999999988655433

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.4e-36  Score=301.09  Aligned_cols=235  Identities=13%  Similarity=0.165  Sum_probs=173.3

Q ss_pred             cCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q 035705          323 CNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFL  402 (758)
Q Consensus       323 ~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~L  402 (758)
                      .++.+++++|+++|++.      .|..|.||||+|+..|+.+++++|+++|++++..+  +.||||+|+..|+.+++++|
T Consensus         9 ~~~~~~~~~Lis~~a~~------~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lL   80 (284)
T PHA02791          9 WKSKQLKSFLSSKDAFK------ADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKIL   80 (284)
T ss_pred             cCHHHHHHHHHhCCCCC------CCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHH
Confidence            36778888888877642      56788888888888888888888888888877654  57888888888888888888


Q ss_pred             HHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcc
Q 035705          403 ASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDE  482 (758)
Q Consensus       403 l~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~  482 (758)
                      ++.|++++.+|..|+                                     ||||+|+..|+.+++++|++. |++++.
T Consensus        81 L~~Gadvn~~d~~G~-------------------------------------TpLh~Aa~~g~~eivk~Ll~~-gadin~  122 (284)
T PHA02791         81 LFSGMDDSQFDDKGN-------------------------------------TALYYAVDSGNMQTVKLFVKK-NWRLMF  122 (284)
T ss_pred             HHCCCCCCCCCCCCC-------------------------------------CHHHHHHHcCCHHHHHHHHHC-CCCcCc
Confidence            888887776655554                                     455556666666666666665 566666


Q ss_pred             cCCCCC-cHHHHHHHcCCHHHHHHHHhCCCCCCcCC-CCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchH-HH
Q 035705          483 QDADGF-SAAMIAAAAGHVEAFRLLLHAGANIKLQN-KYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYA-LH  559 (758)
Q Consensus       483 ~~~~g~-t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~-L~  559 (758)
                      ++..|. ||||+|+..|+.+++++|++++.+.  .+ ..|.||||+|+..|+.++++.|+. .+.+++..+..|.|| ||
T Consensus       123 ~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~-~gAd~n~~d~~g~t~~L~  199 (284)
T PHA02791        123 YGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCIHITIKNGHVDMMILLLD-YMTSTNTNNSLLFIPDIK  199 (284)
T ss_pred             cCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCccHHHHHHHcCCHHHHHHHHH-CCCCCCcccCCCCChHHH
Confidence            666653 6666666666666666666665432  12 235667777777776666665544 355666666677766 99


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCC
Q 035705          560 RAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKC  613 (758)
Q Consensus       560 ~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~  613 (758)
                      +|+..|+.+++++|+++|+++|.+|..| |||      ++.|++++||++-++.
T Consensus       200 ~Aa~~~~~e~v~lLl~~Ga~in~~~~~~-~~l------~~~e~~~~ll~~~~~~  246 (284)
T PHA02791        200 LAIDNKDLEMLQALFKYDINIYSVNLEN-VLL------DDAEIAKMIIEKHVEY  246 (284)
T ss_pred             HHHHcCCHHHHHHHHHCCCCCccCcccC-ccC------CCHHHHHHHHHhhhhh
Confidence            9999999999999999999999999854 666      8899999999987763

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.9e-38  Score=267.99  Aligned_cols=206  Identities=25%  Similarity=0.313  Sum_probs=153.7

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhcCCCCcccCC-CCCcHHHHHHHcCCHHHHHHHH-hCCCCCCcCCCCCCcHHHHHHHcC
Q 035705          454 FSPLMFVTQANDVDALKKLIEWADVDLDEQDA-DGFSAAMIAAAAGHVEAFRLLL-HAGANIKLQNKYGETAITLAELNR  531 (758)
Q Consensus       454 ~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~  531 (758)
                      .++.+.++......-++.+++...-.++.++. +|+||||+||..|+.++|.+|+ +.+..++..|..|+||||+|+..|
T Consensus         4 ~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g   83 (226)
T KOG4412|consen    4 ASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNG   83 (226)
T ss_pred             cchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcC
Confidence            35566666666666666666653334555544 7777777777777777777777 446777777777777777777777


Q ss_pred             ChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCC
Q 035705          532 NGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGA  611 (758)
Q Consensus       532 ~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga  611 (758)
                      +.++|+.|+.+.+.+++..+..|.|+||+|+..|+.+|+++|+++|+.++.+|..|.||||.|+.-|+.+++++|+..|+
T Consensus        84 ~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a  163 (226)
T KOG4412|consen   84 NDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGA  163 (226)
T ss_pred             cHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCC
Confidence            77777777777777777777778888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCccccccccCCCcchHH
Q 035705          612 KCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHTKCGKGSPHVK  669 (758)
Q Consensus       612 d~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~~~~~d~~g~t~l~~a  669 (758)
                      .+|.+|+.|+||||.|.-.|+.+         +..+|+++|++++..|+.| ||+..+
T Consensus       164 ~~n~qDk~G~TpL~~al~e~~~d---------~a~lLV~~gAd~~~edke~-t~~~~a  211 (226)
T KOG4412|consen  164 PLNTQDKYGFTPLHHALAEGHPD---------VAVLLVRAGADTDREDKEG-TALRIA  211 (226)
T ss_pred             CCCcccccCccHHHHHHhccCch---------HHHHHHHhccceeeccccC-chHHHH
Confidence            88888888888888886666665         4557777788888888877 776554

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.7e-36  Score=321.74  Aligned_cols=240  Identities=21%  Similarity=0.277  Sum_probs=150.0

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccc
Q 035705          352 RPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLG  431 (758)
Q Consensus       352 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~  431 (758)
                      ++||.|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..                
T Consensus         4 ~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~----------------   67 (413)
T PHA02875          4 VALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPD----------------   67 (413)
T ss_pred             hHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCC----------------
Confidence            3444444444444444444444444444444444444444444444444444444443322211                


Q ss_pred             hHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCC-cccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 035705          432 FQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDL-DEQDADGFSAAMIAAAAGHVEAFRLLLHAG  510 (758)
Q Consensus       432 ~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  510 (758)
                                           +.||||.|+..|+.+++++|++. |.++ +..+..|.||||+|+..|+.+++++|+++|
T Consensus        68 ---------------------~~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g  125 (413)
T PHA02875         68 ---------------------IESELHDAVEEGDVKAVEELLDL-GKFADDVFYKDGMTPLHLATILKKLDIMKLLIARG  125 (413)
T ss_pred             ---------------------cccHHHHHHHCCCHHHHHHHHHc-CCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCC
Confidence                                 22344444444444444444444 2222 233444556666666666666666666666


Q ss_pred             CCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCC-Cc
Q 035705          511 ANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADG-YT  589 (758)
Q Consensus       511 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g-~t  589 (758)
                      ++++.++..|.||||+|+..|+.++++.|+ +.+.+++..|..|.||||+|+..|+.+++++|+++|++++..+..| .|
T Consensus       126 ad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll-~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t  204 (413)
T PHA02875        126 ADPDIPNTDKFSPLHLAVMMGDIKGIELLI-DHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVA  204 (413)
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-hcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCch
Confidence            666666556666666666666666655444 3344555666677788888888999999999999999999998887 48


Q ss_pred             HHHHHHHcCcHHHHHHHHhCCCCCCCC---CCCCCcHHHHHHHC
Q 035705          590 PLMLAAKSGHGSVCQLLISSGAKCDIE---NARNETALALAREN  630 (758)
Q Consensus       590 pL~~A~~~~~~~iv~~Ll~~gad~~~~---d~~g~t~L~~A~~~  630 (758)
                      |+|+|+..++.+++++|+++|+|++..   +..+.|||++++..
T Consensus       205 ~l~~A~~~~~~~iv~~Ll~~gad~n~~~~~~~~~~t~l~~~~~~  248 (413)
T PHA02875        205 ALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEECTILDMICNM  248 (413)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCcCcchHhhcCCCchHHHHHHHhh
Confidence            899999999999999999999999875   67789999987654

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.1e-35  Score=325.78  Aligned_cols=276  Identities=18%  Similarity=0.198  Sum_probs=232.3

Q ss_pred             CHHHHHHHHhCCCCCCcchhhhhhccccccccCCCCchhHHHH--hcCCHHHHHHHHHcCCCCccccccCccccccccch
Q 035705          192 FVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAV--VSRQISVVRLLLQAGVKMDIKVRMGAWSWDMDTGE  269 (758)
Q Consensus       192 ~~~iv~~Ll~~g~d~~~~~~~~~~~~~~~~~~~~~~t~L~~A~--~~g~~~iv~~Ll~~ga~~~~~~~~g~~~~~~~~~~  269 (758)
                      ..++|+.|++.+ +++...              .+.|+++.+.  ..++.++|++|+++|++++..+             
T Consensus        17 ~~~~v~~ll~~~-~~~~~~--------------~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d-------------   68 (489)
T PHA02798         17 KLSTVKLLIKSC-NPNEIV--------------NEYSIFQKYLQRDSPSTDIVKLFINLGANVNGLD-------------   68 (489)
T ss_pred             cHHHHHHHHhcC-Chhhhc--------------ccchHHHHHHhCCCCCHHHHHHHHHCCCCCCCCC-------------
Confidence            478999999875 444332              2667776444  3458999999999999999763             


Q ss_pred             hhhhhccccccccccchhhhhhhchHHHHHHHhhccCCCCCCCCchHHHHHHHc-----CCHHHHHHHHHccCCCCCCcc
Q 035705          270 ELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILC-----NNARAVELLLNCAVDKEFPVQ  344 (758)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~g~t~L~~A~~~-----g~~~~v~~Ll~~g~~~~~~~~  344 (758)
                                                               ..|.||||.|+..     ++.+++++|+++|++++.   
T Consensus        69 -----------------------------------------~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~---  104 (489)
T PHA02798         69 -----------------------------------------NEYSTPLCTILSNIKDYKHMLDIVKILIENGADINK---  104 (489)
T ss_pred             -----------------------------------------CCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCC---
Confidence                                                     4678999998764     678999999999999887   


Q ss_pred             cCCCCCCcHHHHHHHcC---CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC---HHHHHHHHHCCCCCCCcc-cCCC
Q 035705          345 TYSKTELRPIHLAARLG---SAKILRRLISAGCNINSRTAAGETAAMICARYKH---EECLKFLASEGADLGLIN-YAGQ  417 (758)
Q Consensus       345 ~~~~~g~t~L~~A~~~g---~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~---~~iv~~Ll~~g~~~~~~~-~~g~  417 (758)
                       .+..|.||||+|+..+   +.+++++|+++|++++.+|..|.||||+|++.++   .+++++|+++|++++..+ ..|.
T Consensus       105 -~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~  183 (489)
T PHA02798        105 -KNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKY  183 (489)
T ss_pred             -CCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCC
Confidence             7889999999999986   7899999999999999999999999999999988   999999999999999875 5789


Q ss_pred             CHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHH-------HHHHcCCHHHHHHHHHhcCCCCcccCCCCCcH
Q 035705          418 CANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLM-------FVTQANDVDALKKLIEWADVDLDEQDADGFSA  490 (758)
Q Consensus       418 t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~-------~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~  490 (758)
                      ||+|.++.........+++++|++.|++++..+..+.++++       .+...++.+++++|+.  ++++|.+|..|.||
T Consensus       184 t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~--~~dvN~~d~~G~TP  261 (489)
T PHA02798        184 DTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS--YIDINQVDELGFNP  261 (489)
T ss_pred             cHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHh--cCCCCCcCcCCccH
Confidence            99999887766777889999999999999988888888876       2345567788888776  58899999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHh
Q 035705          491 AMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILE  542 (758)
Q Consensus       491 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~  542 (758)
                      ||+|+..|+.+++++|+++|+|++.++..|+|||++|+..++.++++.|+..
T Consensus       262 L~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~  313 (489)
T PHA02798        262 LYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENESKFIFNSILNK  313 (489)
T ss_pred             HHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcCcHHHHHHHHcc
Confidence            9999999999999999999999998888888888888888887777766543

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.5e-37  Score=260.76  Aligned_cols=182  Identities=29%  Similarity=0.415  Sum_probs=169.6

Q ss_pred             cccCCC-CCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCCcCCCCCCcH
Q 035705          446 IQSSNA-SRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHA-GANIKLQNKYGETA  523 (758)
Q Consensus       446 ~~~~~~-~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~  523 (758)
                      .+.++. +|+||||+||..|+.+++.+|++..++.+|.+|..|+||||+|+..|+.++|+.|+.+ |+|+|..+..|+|+
T Consensus        30 L~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~  109 (226)
T KOG4412|consen   30 LNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTC  109 (226)
T ss_pred             hhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcce
Confidence            444444 7889999999999999999999888899999999999999999999999999999988 99999999999999


Q ss_pred             HHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHH
Q 035705          524 ITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVC  603 (758)
Q Consensus       524 L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv  603 (758)
                      ||+|+..|..++++.|+ +.+..++.+|..|.||||.|+..|.++++++|++.|+.+|.+|+.|+||||.|...++.++.
T Consensus       110 LHyAagK~r~eIaqlLl-e~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a  188 (226)
T KOG4412|consen  110 LHYAAGKGRLEIAQLLL-EKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVA  188 (226)
T ss_pred             ehhhhcCChhhHHHHHH-hcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHH
Confidence            99999999999998555 55599999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCcHHHHHHH
Q 035705          604 QLLISSGAKCDIENARNETALALARE  629 (758)
Q Consensus       604 ~~Ll~~gad~~~~d~~g~t~L~~A~~  629 (758)
                      .+|+++|||++..|++| ||+..|+-
T Consensus       189 ~lLV~~gAd~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  189 VLLVRAGADTDREDKEG-TALRIACN  213 (226)
T ss_pred             HHHHHhccceeeccccC-chHHHHHH
Confidence            99999999999999999 99988863

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=9.5e-35  Score=313.25  Aligned_cols=253  Identities=19%  Similarity=0.255  Sum_probs=217.8

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 035705          313 GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICAR  392 (758)
Q Consensus       313 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  392 (758)
                      .+++|+.|+..|+.+++++|++.|++++.    .+..|.||||+|+..|+.+++++|+++|++++..+..+.||||.|+.
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~n~----~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~   77 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINPNF----EIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVE   77 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCCCc----cCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHH
Confidence            46899999999999999999999999886    56789999999999999999999999999999998999999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHH
Q 035705          393 YKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKL  472 (758)
Q Consensus       393 ~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~L  472 (758)
                      .|+.+++++|++.|++.+..                                    .+..|.||||+|+..|+.+++++|
T Consensus        78 ~g~~~~v~~Ll~~~~~~~~~------------------------------------~~~~g~tpL~~A~~~~~~~iv~~L  121 (413)
T PHA02875         78 EGDVKAVEELLDLGKFADDV------------------------------------FYKDGMTPLHLATILKKLDIMKLL  121 (413)
T ss_pred             CCCHHHHHHHHHcCCccccc------------------------------------ccCCCCCHHHHHHHhCCHHHHHHH
Confidence            99999999999998765321                                    223456788888888889999999


Q ss_pred             HHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCC
Q 035705          473 IEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGS  552 (758)
Q Consensus       473 l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~  552 (758)
                      ++. |++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+ +.+.+++..+.
T Consensus       122 l~~-gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll-~~ga~~n~~~~  199 (413)
T PHA02875        122 IAR-GADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLL-DSGANIDYFGK  199 (413)
T ss_pred             HhC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-hCCCCCCcCCC
Confidence            888 7888888888999999999999999999999999988888888999999999999988888655 45667777766


Q ss_pred             CC-chHHHHHHHcCCHHHHHHHHhcCCCCCCC---CCCCCcHHHHHHHc---CcHHHHHHHH
Q 035705          553 AG-FYALHRAAKRGDFDLVHTLVSRCYDVNAS---DADGYTPLMLAAKS---GHGSVCQLLI  607 (758)
Q Consensus       553 ~g-~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~---d~~g~tpL~~A~~~---~~~~iv~~Ll  607 (758)
                      .| .||+|+|+..|+.+++++|+++|+|+|..   +..+.|||+.++..   ...+.++.++
T Consensus       200 ~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~li  261 (413)
T PHA02875        200 NGCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEECTILDMICNMCTNLESEAIDALI  261 (413)
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHCCcCcchHhhcCCCchHHHHHHHhhcCCcccHHHHHHH
Confidence            66 58999999999999999999999999875   67889999987643   3355565555

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.98  E-value=6.6e-32  Score=276.72  Aligned_cols=208  Identities=25%  Similarity=0.343  Sum_probs=159.2

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCC-CCCCcHHHHHHHcCCh
Q 035705          455 SPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQN-KYGETAITLAELNRNG  533 (758)
Q Consensus       455 t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~  533 (758)
                      ..+..|++.|.++.++.+++..+.+++..|.+|.|+||+|+.+++.+++++|+++|+++|... .-+.||||+|+++|+.
T Consensus        46 ~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~  125 (600)
T KOG0509|consen   46 DDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHI  125 (600)
T ss_pred             hhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcH
Confidence            456677777888888888777677777777788888888888888888888888888887776 4567788888888888


Q ss_pred             hHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCC
Q 035705          534 EVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKC  613 (758)
Q Consensus       534 ~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~  613 (758)
                      .+++ +|.++|++++..|.+|.||||.|++.|+.-+|-+||.+|+|+|.+|.+|+||||+|+.+|+...+..||..|+++
T Consensus       126 ~vv~-lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~  204 (600)
T KOG0509|consen  126 SVVD-LLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASL  204 (600)
T ss_pred             HHHH-HHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccc
Confidence            7777 455677777778888888888888888888888888888888888888888888888777777777788888887


Q ss_pred             CCCC-CCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCccccccccCCCcchHHHHH
Q 035705          614 DIEN-ARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHTKCGKGSPHVKLLK  672 (758)
Q Consensus       614 ~~~d-~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~~~~~d~~g~t~l~~a~~~  672 (758)
                      +.+| .+|.||||+|+..|+..+         ++++++.|++.+..|.+|+||+.+|-.+
T Consensus       205 ~~~d~~~g~TpLHwa~~~gN~~~---------v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  205 LLTDDNHGNTPLHWAVVGGNLTA---------VKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             cccccccCCchHHHHHhcCCcce---------EehhhhcCCcccccccCCCCHHHHHHHh
Confidence            7777 778888888888877763         3356667777888888888887777444

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=3.8e-31  Score=271.15  Aligned_cols=209  Identities=24%  Similarity=0.309  Sum_probs=183.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHC-CCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHH
Q 035705          383 GETAAMICARYKHEECLKFLASE-GADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVT  461 (758)
Q Consensus       383 g~t~L~~A~~~g~~~iv~~Ll~~-g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~  461 (758)
                      -.+.+..|++.|.++.|+.|++. |.+++                                     ..|.+|.|+||+|+
T Consensus        44 ~~~~~v~A~q~G~l~~v~~lve~~g~~v~-------------------------------------~~D~~g~tlLHWAA   86 (600)
T KOG0509|consen   44 SLDDIVKATQYGELETVKELVESEGESVN-------------------------------------NPDREGVTLLHWAA   86 (600)
T ss_pred             hhhhhhhHhhcchHHHHHHHHhhcCcCCC-------------------------------------CCCcCCccceeHHH
Confidence            34556677777777777777776 55554                                     44555667888899


Q ss_pred             HcCCHHHHHHHHHhcCCCCcccC-CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHH
Q 035705          462 QANDVDALKKLIEWADVDLDEQD-ADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVI  540 (758)
Q Consensus       462 ~~~~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll  540 (758)
                      .+++.+++++|+++ |+++|... .-+.||||+|+++|+..+|++|+++|||++.+|.+|.+|+|.|++.|+..++.++|
T Consensus        87 iNNrl~v~r~li~~-gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll  165 (600)
T KOG0509|consen   87 INNRLDVARYLISH-GADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLL  165 (600)
T ss_pred             HcCcHHHHHHHHHc-CCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHH
Confidence            99999999999998 89999888 66889999999999999999999999999999999999999999999999999888


Q ss_pred             HhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCC-CCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCC
Q 035705          541 LEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASD-ADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENAR  619 (758)
Q Consensus       541 ~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d-~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~  619 (758)
                      .+. .+++.+|.+|+||||+|+.+|....++.||+-|+.++..| ..|+||||+|+..|+..++++|++.|++.+.+|.+
T Consensus       166 ~~~-~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~  244 (600)
T KOG0509|consen  166 SKG-ADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTN  244 (600)
T ss_pred             Hhc-ccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEehhhhcCCcccccccC
Confidence            777 8999999999999999999998888999999999999988 89999999999999999999888888999999999


Q ss_pred             CCcHHHHHHHC
Q 035705          620 NETALALAREN  630 (758)
Q Consensus       620 g~t~L~~A~~~  630 (758)
                      |+||+.+|.+.
T Consensus       245 g~tp~~LA~~~  255 (600)
T KOG0509|consen  245 GKTPFDLAQER  255 (600)
T ss_pred             CCCHHHHHHHh
Confidence            99999999776

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.97  E-value=5.9e-31  Score=279.31  Aligned_cols=326  Identities=20%  Similarity=0.225  Sum_probs=287.6

Q ss_pred             ccCCchHHHHHHHcCcHHHHHHHHhCCCCCCcccccCcch-hHHhhhChHHHHHHHHhcCCCccccchHHHHHHHcCChh
Q 035705           86 FKTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYAT-TAAVREDHLEILDLLIKAGACQEACEEALLETSYLGQAR  164 (758)
Q Consensus        86 ~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~~l-~~A~~~g~~~iv~~Ll~~ga~~~~~~~~l~~A~~~g~~~  164 (758)
                      ..+-.|+|-.||..||.|+|++|+.+|+++..+|..|+++ .+|+..||..+|+.|+.+.++++.               
T Consensus       754 e~n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~vea---------------  818 (2131)
T KOG4369|consen  754 EPNIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEA---------------  818 (2131)
T ss_pred             CccccccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhh---------------
Confidence            3566799999999999999999999999999999999964 999999999999999999888764               


Q ss_pred             HHHHHHhccCCCCCCCchHHHHHHhcCCHHHHHHHHhCCCCCCcchhhhhhccccccccCCCCchhHHHHhcCCHHHHHH
Q 035705          165 PAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRL  244 (758)
Q Consensus       165 iv~~Ll~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~d~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~  244 (758)
                                ..+..+.|+|.+||..|..++|++||..|++-..++             -...|||..|...|..++|+.
T Consensus       819 ----------Qsdrtkdt~lSlacsggr~~vvelLl~~gankehrn-------------vsDytPlsla~Sggy~~iI~~  875 (2131)
T KOG4369|consen  819 ----------QSDRTKDTMLSLACSGGRTRVVELLLNAGANKEHRN-------------VSDYTPLSLARSGGYTKIIHA  875 (2131)
T ss_pred             ----------hcccccCceEEEecCCCcchHHHHHHHhhccccccc-------------hhhcCchhhhcCcchHHHHHH
Confidence                      355667899999999999999999999998877666             347899999999999999999


Q ss_pred             HHHcCCCCccccccCccccccccchhhhhhccccccccccchhhhhhhchHHHHHHHhhccCCCCCCCCchHHHHHHHcC
Q 035705          245 LLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCN  324 (758)
Q Consensus       245 Ll~~ga~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~g~t~L~~A~~~g  324 (758)
                      |+.+|++++.+..                                                    ..-|-+||+.|..+|
T Consensus       876 llS~GseInSrtg----------------------------------------------------SklgisPLmlatmng  903 (2131)
T KOG4369|consen  876 LLSSGSEINSRTG----------------------------------------------------SKLGISPLMLATMNG  903 (2131)
T ss_pred             Hhhcccccccccc----------------------------------------------------cccCcchhhhhhhcc
Confidence            9999999998743                                                    356889999999999


Q ss_pred             CHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 035705          325 NARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLAS  404 (758)
Q Consensus       325 ~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~  404 (758)
                      +.+.++.|++.|.|+|..+.   .+.+|+|-+|+..|..++|.+||.+.+++..+-..|-|||+-++..|.+|+-++|+.
T Consensus       904 h~~at~~ll~~gsdiNaqIe---TNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~  980 (2131)
T KOG4369|consen  904 HQAATLSLLQPGSDINAQIE---TNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIA  980 (2131)
T ss_pred             ccHHHHHHhcccchhccccc---cccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhh
Confidence            99999999999999998743   477899999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccC
Q 035705          405 EGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQD  484 (758)
Q Consensus       405 ~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~  484 (758)
                      .|+|++....-                                   ....|+|..++..|+...+..|+.. .+.+..++
T Consensus       981 ~gad~nasPvp-----------------------------------~T~dtalti~a~kGh~kfv~~lln~-~atv~v~N 1024 (2131)
T KOG4369|consen  981 AGADTNASPVP-----------------------------------NTWDTALTIPANKGHTKFVPKLLNG-DATVRVPN 1024 (2131)
T ss_pred             cccccccCCCC-----------------------------------CcCCccceeecCCCchhhhHHhhCC-ccceeccc
Confidence            99998753211                                   1123678888888999999988886 67888888


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHH
Q 035705          485 ADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVI  540 (758)
Q Consensus       485 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll  540 (758)
                      .+|+|+|..|+..|++..+.+|+++++|++..|....++++.|.+.|+.+||++..
T Consensus      1025 kkG~T~Lwla~~Gg~lss~~il~~~~ad~d~qdnr~~S~~maafRKgh~~iVk~mv 1080 (2131)
T KOG4369|consen 1025 KKGCTVLWLASAGGALSSCPILVSSVADADQQDNRTNSRTMAAFRKGHFAIVKKMV 1080 (2131)
T ss_pred             CCCCcccchhccCCccccchHHhhcccChhhhhcccccccHHHHHhchhheecccc
Confidence            99999999999999999999999999999888888888999999999998888765

>PHA02795 ankyrin-like protein; Provisional

Probab=99.97  E-value=4.1e-29  Score=256.03  Aligned_cols=218  Identities=15%  Similarity=0.101  Sum_probs=187.1

Q ss_pred             HHHHHhCCCCCCcccccCcchhHHhhhChHHHHHHHHhcCCCccccchHHHHHHHcCChhHHHHHHhccCCCCCCCchHH
Q 035705          105 VRKLLSLGANVNQKLFRGYATTAAVREDHLEILDLLIKAGACQEACEEALLETSYLGQARPAELLMATDLIRPQVSVHAL  184 (758)
Q Consensus       105 v~~Ll~~ga~~~~~~~~g~~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~t~L  184 (758)
                      -+|++++|+++|....+|    +|+..+..+++++|+++|++++.-.+                .+    ..+..++|+|
T Consensus        65 ~~~~~~~~~~i~~~~~~~----~~~~~~~k~~~~~l~s~~~~~~~~~~----------------~~----~~~~~~~~~L  120 (437)
T PHA02795         65 YDYFRIHRDNIDQYIVDR----LFAYITYKDIISALVSKNYMEDIFSI----------------II----KNCNSVQDLL  120 (437)
T ss_pred             HHHHHHcCcchhhhhhhh----HHhhcchHHHHHHHHhcccccchhhh----------------hh----hccccccHHH
Confidence            589999999999887776    89999999999999999998773111                11    1455689999


Q ss_pred             HHHHh--cCCHHHHHHHHhCCCCCCcchhhhhhccccccccCCCCchhHHHHhcCCHHHHHHHHHcCCCCccccccCccc
Q 035705          185 VSACF--RGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWS  262 (758)
Q Consensus       185 ~~A~~--~g~~~iv~~Ll~~g~d~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~~~  262 (758)
                      |.++.  .|+.++|++|+++|+|++..+               +.||||.|+..++.+++++|+++|++......   ++
T Consensus       121 ~~~~~n~~n~~eiV~~LI~~GADIn~~~---------------~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~---~~  182 (437)
T PHA02795        121 LYYLSNAYVEIDIVDFMVDHGAVIYKIE---------------CLNAYFRGICKKESSVVEFILNCGIPDENDVK---LD  182 (437)
T ss_pred             HHHHHhcCCCHHHHHHHHHCCCCCCCCC---------------CCCHHHHHHHcCcHHHHHHHHhcCCccccccc---ch
Confidence            99999  999999999999999999855               68999999999999999999999985432210   00


Q ss_pred             cccccchhhhhhccccccccccchhhhhhhchHHHHHHHhhccCCCCCCCCchHHHHHHHcCCHHHHHHHHHccCCCCCC
Q 035705          263 WDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFP  342 (758)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~  342 (758)
                      +                                             .+..+.+++|.|...++.+++++|+++|++++. 
T Consensus       183 l---------------------------------------------~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~-  216 (437)
T PHA02795        183 L---------------------------------------------YKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQ-  216 (437)
T ss_pred             h---------------------------------------------hhhhccchhHHHHhcCHHHHHHHHHhCcCCcCc-
Confidence            0                                             112466999999999999999999999999886 


Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC--------HHHHHHHHHCCCCCCCcc
Q 035705          343 VQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKH--------EECLKFLASEGADLGLIN  413 (758)
Q Consensus       343 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~--------~~iv~~Ll~~g~~~~~~~  413 (758)
                         ++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+        .+++++|+++|++++...
T Consensus       217 ---kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~~  292 (437)
T PHA02795        217 ---LDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCIK  292 (437)
T ss_pred             ---CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCchh
Confidence               78999999999999999999999999999999999999999999999984        699999999999887643

>PHA02795 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.1e-28  Score=252.92  Aligned_cols=218  Identities=13%  Similarity=0.036  Sum_probs=163.3

Q ss_pred             HHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCc------ccCCCCCcHHHHHHH--cCCHHHHHHHH
Q 035705          436 VVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLD------EQDADGFSAAMIAAA--AGHVEAFRLLL  507 (758)
Q Consensus       436 ~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~------~~~~~g~t~L~~A~~--~g~~~~v~~Ll  507 (758)
                      .++++.+|.+++....++     +|+..+..|++++|+.+ |++++      .++..++|+||+++.  .|+.++|++|+
T Consensus        65 ~~~~~~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~-~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI  138 (437)
T PHA02795         65 YDYFRIHRDNIDQYIVDR-----LFAYITYKDIISALVSK-NYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMV  138 (437)
T ss_pred             HHHHHHcCcchhhhhhhh-----HHhhcchHHHHHHHHhc-ccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHH
Confidence            344555555555554444     56667777777777776 66766      566667777777777  67777777777


Q ss_pred             hCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCC-----CCCCchHHHHHHHcCCHHHHHHHHhcCCCCCC
Q 035705          508 HAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQK-----GSAGFYALHRAAKRGDFDLVHTLVSRCYDVNA  582 (758)
Q Consensus       508 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~-----~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~  582 (758)
                      ++|||++..  .+.||+|.|+..++.+++++|+.....+.+..     +..+.||+|.|+..++.+++++|+++|+++|.
T Consensus       139 ~~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~  216 (437)
T PHA02795        139 DHGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQ  216 (437)
T ss_pred             HCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCc
Confidence            777777663  34677777777777777776665543232222     13477999999999999999999999999999


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCccccccccC
Q 035705          583 SDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHTKCG  662 (758)
Q Consensus       583 ~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~~~~~d~~g  662 (758)
                      +|..|+||||+|+..|+.+++++|+++||+++.+|..|+||||+|+..|+.-. ..--..+++++|+++|++++..+..+
T Consensus       217 kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~-~~~~~~eIvelLL~~gadI~~~~~~~  295 (437)
T PHA02795        217 LDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIA-RRETHLKILEILLREPLSIDCIKLAI  295 (437)
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCccc-ccccHHHHHHHHHhCCCCCCchhHHh
Confidence            99999999999999999999999999999999999999999999999985300 00000147778999999998876544

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=2.1e-28  Score=234.78  Aligned_cols=176  Identities=15%  Similarity=0.205  Sum_probs=158.6

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcC--CHHHHHHHHhCCCCCCcCC-CCCCcHHHHH
Q 035705          451 ASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAG--HVEAFRLLLHAGANIKLQN-KYGETAITLA  527 (758)
Q Consensus       451 ~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A  527 (758)
                      +.+.|||+.|+..++.+.++.|++.    ++..+..|.||||+|+..+  +.+++++|+++|++++.++ ..|.||||+|
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk~Li~~----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a   94 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVKKWIKF----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHY   94 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHHHHHHh----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHH
Confidence            4557999999999999999999975    5678899999999999854  8999999999999999997 5899999998


Q ss_pred             HHc---CChhHHHHHHHhhccccCCCCCCCchHHHHHHH--cCCHHHHHHHHhcCCCCCCCCCCCCcHHHH-HHHcCcHH
Q 035705          528 ELN---RNGEVLEQVILEYALEEGQKGSAGFYALHRAAK--RGDFDLVHTLVSRCYDVNASDADGYTPLML-AAKSGHGS  601 (758)
Q Consensus       528 ~~~---~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~--~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~-A~~~~~~~  601 (758)
                      +..   ++.++++.|+ +.+.+++..|..|.||||.|+.  .++.+++++|+++|++++.+|..|.||||. |+..++.+
T Consensus        95 ~~~~~~~~~eiv~~Ll-~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~  173 (209)
T PHA02859         95 LSFNKNVEPEILKILI-DSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKK  173 (209)
T ss_pred             HHhCccccHHHHHHHH-HCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHH
Confidence            763   4789988666 6789999999999999999986  468999999999999999999999999996 56788999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCcHHHHHHHCC
Q 035705          602 VCQLLISSGAKCDIENARNETALALARENG  631 (758)
Q Consensus       602 iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~  631 (758)
                      ++++|+++|++++.+|..|+||||+|..++
T Consensus       174 iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        174 IFDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            999999999999999999999999998764

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.96  E-value=4.6e-30  Score=272.59  Aligned_cols=322  Identities=23%  Similarity=0.258  Sum_probs=295.8

Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCcHH
Q 035705          309 ILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINS-RTAAGETAA  387 (758)
Q Consensus       309 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L  387 (758)
                      ...+-.|+|-.||..|+.|+|++|+.+|+++..    +|+.|.+||.+|+..||..+|+.|+.+.++++. .|..+.|+|
T Consensus       753 Te~n~~t~LT~acaggh~e~vellv~rganieh----rdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~l  828 (2131)
T KOG4369|consen  753 TEPNIKTNLTSACAGGHREEVELLVVRGANIEH----RDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTML  828 (2131)
T ss_pred             cCccccccccccccCccHHHHHHHHHhcccccc----cccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceE
Confidence            345567999999999999999999999999776    899999999999999999999999999999985 567899999


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCC--CCCCcHHHHHHHcCC
Q 035705          388 MICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSN--ASRFSPLMFVTQAND  465 (758)
Q Consensus       388 ~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~--~~~~t~L~~a~~~~~  465 (758)
                      .+|+..|+.++|++||..|++-..++....||+.+|    ...++.+++..|+..|..++.+.  +.|.+||+.|..+|+
T Consensus       829 Slacsggr~~vvelLl~~gankehrnvsDytPlsla----~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh  904 (2131)
T KOG4369|consen  829 SLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLA----RSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGH  904 (2131)
T ss_pred             EEecCCCcchHHHHHHHhhccccccchhhcCchhhh----cCcchHHHHHHHhhcccccccccccccCcchhhhhhhccc
Confidence            999999999999999999999999999999999999    66789999999999999888765  678899999999999


Q ss_pred             HHHHHHHHHhcCCCCcccC-CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhc
Q 035705          466 VDALKKLIEWADVDLDEQD-ADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYA  544 (758)
Q Consensus       466 ~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~  544 (758)
                      .+.++.||+. |.|+|..- .+.+|+|-+|+..|+.++|.+||.+.+++..+.+.|.|||+-++..|..++-. ||...+
T Consensus       905 ~~at~~ll~~-gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~-~li~~g  982 (2131)
T KOG4369|consen  905 QAATLSLLQP-GSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGN-LLIAAG  982 (2131)
T ss_pred             cHHHHHHhcc-cchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccch-hhhhcc
Confidence            9999999998 88999754 46789999999999999999999999999999999999999999999999877 455566


Q ss_pred             cccCCC--CCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCc
Q 035705          545 LEEGQK--GSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNET  622 (758)
Q Consensus       545 ~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t  622 (758)
                      .+.+..  -....|+|-+++..|+...|+.|+...+.+..+++.|.|+|..|+..|+...+.+|+++++|++..|....|
T Consensus       983 ad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad~d~qdnr~~S 1062 (2131)
T KOG4369|consen  983 ADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVLWLASAGGALSSCPILVSSVADADQQDNRTNS 1062 (2131)
T ss_pred             cccccCCCCCcCCccceeecCCCchhhhHHhhCCccceecccCCCCcccchhccCCccccchHHhhcccChhhhhccccc
Confidence            666654  234458999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCChhhHHHHH
Q 035705          623 ALALARENGNGNEAENVI  640 (758)
Q Consensus       623 ~L~~A~~~~~~~~~~~ll  640 (758)
                      +++-|.+.|+..+|++..
T Consensus      1063 ~~maafRKgh~~iVk~mv 1080 (2131)
T KOG4369|consen 1063 RTMAAFRKGHFAIVKKMV 1080 (2131)
T ss_pred             ccHHHHHhchhheecccc
Confidence            999999999999998876

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=9.7e-28  Score=230.12  Aligned_cols=176  Identities=18%  Similarity=0.129  Sum_probs=155.3

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcC--ChhHHHHHHHhhccccCCCC-CCCchHHHHH
Q 035705          485 ADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNR--NGEVLEQVILEYALEEGQKG-SAGFYALHRA  561 (758)
Q Consensus       485 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~--~~~~v~~ll~~~~~~~~~~~-~~g~t~L~~A  561 (758)
                      ..+.||||.|+..|+.++|+.|++.   ++..+..|.||||+|+..+  +.++++.|+ +.+.+++..+ ..|.||||+|
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll-~~gadvn~~~~~~g~TpLh~a   94 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLI-ENGADVNFKTRDNNLSALHHY   94 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHH-HCCCCCCccCCCCCCCHHHHH
Confidence            4568999999999999999999976   4667889999999999855  889998666 5678888886 5899999998


Q ss_pred             HHc---CCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH--cCcHHHHHHHHhCCCCCCCCCCCCCcHHHH-HHHCCChhh
Q 035705          562 AKR---GDFDLVHTLVSRCYDVNASDADGYTPLMLAAK--SGHGSVCQLLISSGAKCDIENARNETALAL-ARENGNGNE  635 (758)
Q Consensus       562 ~~~---g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~--~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~-A~~~~~~~~  635 (758)
                      +..   ++.+++++|+++|+++|.+|..|.||||+|+.  .++.+++++|+++|+|++.+|..|.||||. |+..++.+ 
T Consensus        95 ~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~-  173 (209)
T PHA02859         95 LSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKK-  173 (209)
T ss_pred             HHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHH-
Confidence            764   47999999999999999999999999999986  468999999999999999999999999996 55566664 


Q ss_pred             HHHHHHHHHHHHHHhCCCccccccccCCCcchHHHHHH
Q 035705          636 AENVILDELALTLVLDGTYVKKHTKCGKGSPHVKLLKM  673 (758)
Q Consensus       636 ~~~ll~~~~~~~L~~~g~~~~~~d~~g~t~l~~a~~~~  673 (758)
                              ++++|+++|++++.+|..|+||+++|..+.
T Consensus       174 --------iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        174 --------IFDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             --------HHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence                    677899999999999999999999997754

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.94  E-value=9.7e-28  Score=211.49  Aligned_cols=235  Identities=24%  Similarity=0.293  Sum_probs=172.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcc
Q 035705          349 TELRPIHLAARLGSAKILRRLISAGCN-INSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSR  427 (758)
Q Consensus       349 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~  427 (758)
                      .|..-+-.+.+.|+.+++..+.....+ +...+.+|.++++.++-.++...+..++.+|+..|..+-.+.          
T Consensus        61 lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~----------  130 (296)
T KOG0502|consen   61 LGESLLTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPW----------  130 (296)
T ss_pred             cCCcccchhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhcCCCCCcceeeeeecccccCCccccccC----------
Confidence            344444555566666666655554333 334445566666666666666666666666665554443333          


Q ss_pred             cccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHH
Q 035705          428 WTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLL  507 (758)
Q Consensus       428 ~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  507 (758)
                                                 +|+.+++...+.+.+..+.+   ..+|..|+.|.|||.+|+..|+.++|++|+
T Consensus       131 ---------------------------s~~slsVhql~L~~~~~~~~---n~VN~~De~GfTpLiWAaa~G~i~vV~fLL  180 (296)
T KOG0502|consen  131 ---------------------------SPLSLSVHQLHLDVVDLLVN---NKVNACDEFGFTPLIWAAAKGHIPVVQFLL  180 (296)
T ss_pred             ---------------------------ChhhHHHHHHHHHHHHHHhh---ccccCccccCchHhHHHHhcCchHHHHHHH
Confidence                                       34444444445555544444   468889999999999999999999999999


Q ss_pred             hCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCC
Q 035705          508 HAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADG  587 (758)
Q Consensus       508 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g  587 (758)
                      +.|+|++...+..                                  .|+|.+|++.|..+||++||.++.|+|..|.+|
T Consensus       181 ~~GAdp~~lgk~r----------------------------------esALsLAt~ggytdiV~lLL~r~vdVNvyDwNG  226 (296)
T KOG0502|consen  181 NSGADPDALGKYR----------------------------------ESALSLATRGGYTDIVELLLTREVDVNVYDWNG  226 (296)
T ss_pred             HcCCChhhhhhhh----------------------------------hhhHhHHhcCChHHHHHHHHhcCCCcceeccCC
Confidence            9999997665433                                  356778888889999999999999999999999


Q ss_pred             CcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCccccccccCCCcch
Q 035705          588 YTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHTKCGKGSPH  667 (758)
Q Consensus       588 ~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~~~~~d~~g~t~l~  667 (758)
                      -|||-||++.++.++|+.|++.|||++..+..|++++.+|+..|+. +|+..         +++-++.+.+|+.-+||+|
T Consensus       227 gTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~Vqqv---------ie~h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  227 GTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR-IVQQV---------IEKHALKLCQDSEKRTPLH  296 (296)
T ss_pred             CceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH-HHHHH---------HHHHHHHHhhcccCCCCCC
Confidence            9999999999999999999999999999999999999999999987 44444         4444455566777777765

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.92  E-value=5.8e-25  Score=228.10  Aligned_cols=253  Identities=21%  Similarity=0.262  Sum_probs=161.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHHccC---------CCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCc
Q 035705          315 TLIHHAILCNNARAVELLLNCAV---------DKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGET  385 (758)
Q Consensus       315 t~L~~A~~~g~~~~v~~Ll~~g~---------~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t  385 (758)
                      +-+..|++.|+.+.+..|++.-.         ......+..|.+|.|+||.|+.+|+.+++++|+++.+-++..|..|.+
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~   84 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGIL   84 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcc
Confidence            34666777777777777776310         001112334455556666666666666666666555555555555556


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCC
Q 035705          386 AAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQAND  465 (758)
Q Consensus       386 ~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~  465 (758)
                      |||+|++.|+.+++|+|+.++..+|..+                                     .+|.||||.|++.|+
T Consensus        85 plhlaaw~g~~e~vkmll~q~d~~na~~-------------------------------------~e~~tplhlaaqhgh  127 (854)
T KOG0507|consen   85 PLHLAAWNGNLEIVKMLLLQTDILNAVN-------------------------------------IENETPLHLAAQHGH  127 (854)
T ss_pred             eEEehhhcCcchHHHHHHhcccCCCccc-------------------------------------ccCcCccchhhhhcc
Confidence            6666666665555555555543332222                                     222345555555555


Q ss_pred             HHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhcc
Q 035705          466 VDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYAL  545 (758)
Q Consensus       466 ~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~  545 (758)
                      .+++.+|+++ ++|+-..+..+.|+|-.|++.|..++|+.|++...++-.                        +...+ 
T Consensus       128 ~dvv~~Ll~~-~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~------------------------~~~~~-  181 (854)
T KOG0507|consen  128 LEVVFYLLKK-NADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQS------------------------SLRVG-  181 (854)
T ss_pred             hHHHHHHHhc-CCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhh------------------------cccCC-
Confidence            5555555555 455555555555555555555555555555544111100                        00011 


Q ss_pred             ccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHH
Q 035705          546 EEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALA  625 (758)
Q Consensus       546 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~  625 (758)
                       -...+..+.+|||.|+++|+.++++.|++.|.|+|.....| |+||.|+..|..++|.+|++.|.+..++|..|+|+|.
T Consensus       182 -~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t~~g-talheaalcgk~evvr~ll~~gin~h~~n~~~qtald  259 (854)
T KOG0507|consen  182 -DIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTTEDG-TALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALD  259 (854)
T ss_pred             -CCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccccccc-hhhhhHhhcCcchhhhHHHhhccccccccccchHHHH
Confidence             23345678899999999999999999999999999988776 8999999999999999999999999999999999999


Q ss_pred             HHHHCCC
Q 035705          626 LARENGN  632 (758)
Q Consensus       626 ~A~~~~~  632 (758)
                      +-...-.
T Consensus       260 il~d~~~  266 (854)
T KOG0507|consen  260 IIIDLQE  266 (854)
T ss_pred             HHHhcch
Confidence            8776543

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.92  E-value=1.6e-25  Score=197.61  Aligned_cols=205  Identities=22%  Similarity=0.260  Sum_probs=170.8

Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 035705          309 ILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAM  388 (758)
Q Consensus       309 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~  388 (758)
                      .+.+|+++++.|+-+++.+.+..++.+|+..|.    .+-.+++|+.+++...+.+.+..+.++  -+|..|..|.|||.
T Consensus        92 t~p~g~~~~~v~ap~~s~~k~sttltN~~rgne----vs~~p~s~~slsVhql~L~~~~~~~~n--~VN~~De~GfTpLi  165 (296)
T KOG0502|consen   92 TDPEGWSALLVAAPCGSVDKVSTTLTNGARGNE----VSLMPWSPLSLSVHQLHLDVVDLLVNN--KVNACDEFGFTPLI  165 (296)
T ss_pred             CCchhhhhhhhcCCCCCcceeeeeecccccCCc----cccccCChhhHHHHHHHHHHHHHHhhc--cccCccccCchHhH
Confidence            356799999999999999999999999988776    577899999999999988888777664  67889999999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHH
Q 035705          389 ICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDA  468 (758)
Q Consensus       389 ~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~  468 (758)
                      +|+.+|++++|++|++.|++++...+...                                     |+|..|++.|..++
T Consensus       166 WAaa~G~i~vV~fLL~~GAdp~~lgk~re-------------------------------------sALsLAt~ggytdi  208 (296)
T KOG0502|consen  166 WAAAKGHIPVVQFLLNSGADPDALGKYRE-------------------------------------SALSLATRGGYTDI  208 (296)
T ss_pred             HHHhcCchHHHHHHHHcCCChhhhhhhhh-------------------------------------hhHhHHhcCChHHH
Confidence            99999999999999999999877654443                                     57777788888888


Q ss_pred             HHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccC
Q 035705          469 LKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEG  548 (758)
Q Consensus       469 v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~  548 (758)
                      |+.||.+ +.|+|..|-+|-|||.+|++.++.++++.|++.|+|++..+..|.+++..|+..|+. +|+.+++++... .
T Consensus       209 V~lLL~r-~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~lk-l  285 (296)
T KOG0502|consen  209 VELLLTR-EVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR-IVQQVIEKHALK-L  285 (296)
T ss_pred             HHHHHhc-CCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH-HHHHHHHHHHHH-H
Confidence            9988888 788999999999999999999999999999999999998888899999999988887 777666655433 3


Q ss_pred             CCCCCCchHHH
Q 035705          549 QKGSAGFYALH  559 (758)
Q Consensus       549 ~~~~~g~t~L~  559 (758)
                      ..|+.-.||+|
T Consensus       286 ~Q~~~~~~~~~  296 (296)
T KOG0502|consen  286 CQDSEKRTPLH  296 (296)
T ss_pred             hhcccCCCCCC
Confidence            34445555553

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.92  E-value=1.2e-24  Score=225.70  Aligned_cols=271  Identities=20%  Similarity=0.161  Sum_probs=218.4

Q ss_pred             HHHHHHHHHcCCHHHHHhhhcCCCCCcccccceeeccccceeeecccccchhhhhhhcccCCchHHHHHHHcCcHHHHHH
Q 035705           28 SQRLVDAAHVNDVKRANECIGDPFVDVNFVGTVSLRAKKTELVLHDEAAHEVRVVYEEFKTEVTALFLAAHAGNLTLVRK  107 (758)
Q Consensus        28 ~~~L~~A~~~G~~~~v~~LL~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~  107 (758)
                      .+-|..|++.||++.|..||+..++   ..+.....             .+..-+...|.+|.|+||.|+.+|+.+++++
T Consensus         4 ~qel~~a~ka~d~~tva~ll~~~~~---r~~~l~~~-------------trsds~n~qd~~gfTalhha~Lng~~~is~l   67 (854)
T KOG0507|consen    4 KQELIDACKAGDYDTVALLLSSKKG---RSGLLFFT-------------TRSDSHNLQDYSGFTLLHHAVLNGQNQISKL   67 (854)
T ss_pred             hhhHHHhhhcccHHHHHHhccCCCC---CCCCCCCC-------------CCCccccccCccchhHHHHHHhcCchHHHHH
Confidence            4668999999999999999998643   11111111             1112223446799999999999999999999


Q ss_pred             HHhCCCCCCcccccCcc-hhHHhhhChHHHHHHHHhcCCCccccchHHHHHHHcCChhHHHHHHhccCCCCCCCchHHHH
Q 035705          108 LLSLGANVNQKLFRGYA-TTAAVREDHLEILDLLIKAGACQEACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVS  186 (758)
Q Consensus       108 Ll~~ga~~~~~~~~g~~-l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~t~L~~  186 (758)
                      |++..+-++..+..|.. +|+|+++|+.+++++|+.++..+|.                          ....|.||||.
T Consensus        68 lle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na--------------------------~~~e~~tplhl  121 (854)
T KOG0507|consen   68 LLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNA--------------------------VNIENETPLHL  121 (854)
T ss_pred             HhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCc--------------------------ccccCcCccch
Confidence            99999999999988885 5999999999999999999866554                          44568999999


Q ss_pred             HHhcCCHHHHHHHHhCCCCCCcchhhhhhccccccccCCCCchhHHHHhcCCHHHHHHHHHcCCCCccccccCccccccc
Q 035705          187 ACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWDMD  266 (758)
Q Consensus       187 A~~~g~~~iv~~Ll~~g~d~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~~~~~~~  266 (758)
                      |+..||.+++.+|+++|+|+-..+             +.+.|+|..|++.|..++|+.|+....++...+          
T Consensus       122 aaqhgh~dvv~~Ll~~~adp~i~n-------------ns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~----------  178 (854)
T KOG0507|consen  122 AAQHGHLEVVFYLLKKNADPFIRN-------------NSKETVLDLASRFGRAEVVQMLLQKKFPVQSSL----------  178 (854)
T ss_pred             hhhhcchHHHHHHHhcCCCccccC-------------cccccHHHHHHHhhhhHHHHHHhhhccchhhcc----------
Confidence            999999999999999999998888             569999999999999999999999833222110          


Q ss_pred             cchhhhhhccccccccccchhhhhhhchHHHHHHHhhccCCCCCCCCchHHHHHHHcCCHHHHHHHHHccCCCCCCcccC
Q 035705          267 TGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTY  346 (758)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~  346 (758)
                                                          ...+...+..+.+|||.|+++|+.++++.|++.|.++|.     
T Consensus       179 ------------------------------------~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~-----  217 (854)
T KOG0507|consen  179 ------------------------------------RVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINY-----  217 (854)
T ss_pred             ------------------------------------cCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCccc-----
Confidence                                                001223456788999999999999999999999999886     


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC---CHHHHHHHHH
Q 035705          347 SKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYK---HEECLKFLAS  404 (758)
Q Consensus       347 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g---~~~iv~~Ll~  404 (758)
                      ....-|+||.|+..|..++|.+|++.|.+...++.+|.|+|.+-...-   ..+++-++..
T Consensus       218 ~t~~gtalheaalcgk~evvr~ll~~gin~h~~n~~~qtaldil~d~~~~~~~ei~ga~~~  278 (854)
T KOG0507|consen  218 TTEDGTALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALDIIIDLQENRRYEIAGAVKN  278 (854)
T ss_pred             ccccchhhhhHhhcCcchhhhHHHhhccccccccccchHHHHHHHhcchhhhhhhhhhhhc
Confidence            355668999999999999999999999999999999999998766432   3455554443

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.92  E-value=6.4e-24  Score=245.79  Aligned_cols=178  Identities=25%  Similarity=0.299  Sum_probs=163.6

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHH
Q 035705          449 SNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAE  528 (758)
Q Consensus       449 ~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  528 (758)
                      .+.++.++|+.|+..|+.++++.|++. |+++|..|..|.||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+
T Consensus       521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~-G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~  599 (823)
T PLN03192        521 DDPNMASNLLTVASTGNAALLEELLKA-KLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAI  599 (823)
T ss_pred             CCccchhHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHH
Confidence            344567899999999999999999998 8999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHh
Q 035705          529 LNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLIS  608 (758)
Q Consensus       529 ~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~  608 (758)
                      ..|+.++++.|+.. +...  ....+.++||.|+..|+.++++.|+++|+|+|.+|..|+||||+|+..|+.+++++|++
T Consensus       600 ~~g~~~iv~~L~~~-~~~~--~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~  676 (823)
T PLN03192        600 SAKHHKIFRILYHF-ASIS--DPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIM  676 (823)
T ss_pred             HhCCHHHHHHHHhc-Cccc--CcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHH
Confidence            99999999988743 3322  23467799999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCC-CcHHHHHHHC
Q 035705          609 SGAKCDIENARN-ETALALAREN  630 (758)
Q Consensus       609 ~gad~~~~d~~g-~t~L~~A~~~  630 (758)
                      +|||++.+|..| .||+.++...
T Consensus       677 ~GAdv~~~~~~g~~t~~~l~~~~  699 (823)
T PLN03192        677 NGADVDKANTDDDFSPTELRELL  699 (823)
T ss_pred             cCCCCCCCCCCCCCCHHHHHHHH
Confidence            999999999988 9999887543

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.91  E-value=6e-24  Score=245.21  Aligned_cols=262  Identities=17%  Similarity=0.127  Sum_probs=166.9

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHc--cCCCCCCcccCCCCCCcHHH-HHHHcCCHHHHHHHHHcCCCCCCCCCCCCcH
Q 035705          310 LHNGRTLIHHAILCNNARAVELLLNC--AVDKEFPVQTYSKTELRPIH-LAARLGSAKILRRLISAGCNINSRTAAGETA  386 (758)
Q Consensus       310 ~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~  386 (758)
                      -..++..++.|+..|+.+.++.+++.  +.++|.    .|..|.|||| .|+.+++.+++++|+++|+    .+..|.||
T Consensus        14 ~~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~----~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~   85 (743)
T TIGR00870        14 LSDEEKAFLPAAERGDLASVYRDLEEPKKLNINC----PDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTL   85 (743)
T ss_pred             CCHHHHHHHHHHHcCCHHHHHHHhccccccCCCC----cCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHH
Confidence            35667888889999999999888887  555554    6788888998 8888888888888888877    56678888


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCH
Q 035705          387 AMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDV  466 (758)
Q Consensus       387 L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~  466 (758)
                      ||.|+. +..+.++.++....+....   + .+....                   ..........|.||||.|+..|+.
T Consensus        86 Lh~A~~-~~~~~v~~ll~~l~~~~~~---~-~~~~~~-------------------~~~~~~~~~~G~TpLhlAa~~~~~  141 (743)
T TIGR00870        86 LHAISL-EYVDAVEAILLHLLAAFRK---S-GPLELA-------------------NDQYTSEFTPGITALHLAAHRQNY  141 (743)
T ss_pred             HHHHHh-ccHHHHHHHHHHHhhcccc---c-Cchhhh-------------------ccccccccCCCCcHHHHHHHhCCH
Confidence            888876 3333333333332111100   0 000000                   000112234677888888888888


Q ss_pred             HHHHHHHHhcCCCCcccC--------------CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCC
Q 035705          467 DALKKLIEWADVDLDEQD--------------ADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRN  532 (758)
Q Consensus       467 ~~v~~Ll~~~~~~~~~~~--------------~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  532 (758)
                      ++++.|+++ |++++.++              ..|.||||.|+..|+.+++++|+++|+|++..|..|+||||+|+..+.
T Consensus       142 eiVklLL~~-GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~  220 (743)
T TIGR00870       142 EIVKLLLER-GASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENE  220 (743)
T ss_pred             HHHHHHHhC-CCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhh
Confidence            888888887 78877543              247788888888888888888888888888777777887777776652


Q ss_pred             hhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcC---CCC----CCCCCCCCcHHHHHHHcCcHHHHHH
Q 035705          533 GEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRC---YDV----NASDADGYTPLMLAAKSGHGSVCQL  605 (758)
Q Consensus       533 ~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g---a~~----n~~d~~g~tpL~~A~~~~~~~iv~~  605 (758)
                      ...-                  .+.+       ...+.+++++.+   .+.    +..|.+|.||||+|+..|+.+++++
T Consensus       221 ~~~~------------------~~~l-------~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~l  275 (743)
T TIGR00870       221 FKAE------------------YEEL-------SCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRL  275 (743)
T ss_pred             hhHH------------------HHHH-------HHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHH
Confidence            1110                  0000       122333333333   233    5567777777777777777777777


Q ss_pred             HHhCCCCCCCCCCCCCcHHHHHHH
Q 035705          606 LISSGAKCDIENARNETALALARE  629 (758)
Q Consensus       606 Ll~~gad~~~~d~~g~t~L~~A~~  629 (758)
                      |++.+.+..........|.+.+..
T Consensus       276 LL~~~~~~kk~~a~~~~~~~~~~~  299 (743)
T TIGR00870       276 KLAIKYKQKKFVAWPNGQQLLSLY  299 (743)
T ss_pred             HHHHHHhcceeeccCcchHhHhhh
Confidence            777555444434445555555443

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.91  E-value=1.3e-23  Score=242.52  Aligned_cols=260  Identities=16%  Similarity=0.116  Sum_probs=186.3

Q ss_pred             CchHHHHHHhcCCHHHHHHHHhC--CCCCCcchhhhhhccccccccCCCCchhH-HHHhcCCHHHHHHHHHcCCCCcccc
Q 035705          180 SVHALVSACFRGFVNVVDTLIKC--GVDANAIDRVLLQSSKPALHANFDCNALV-GAVVSRQISVVRLLLQAGVKMDIKV  256 (758)
Q Consensus       180 ~~t~L~~A~~~g~~~iv~~Ll~~--g~d~~~~~~~~~~~~~~~~~~~~~~t~L~-~A~~~g~~~iv~~Ll~~ga~~~~~~  256 (758)
                      +..+++.|+..|+.+.++.+++.  +.++|..|             ..|.|||| .|+.+++.+++++|+++|+    . 
T Consensus        17 ~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d-------------~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~-   78 (743)
T TIGR00870        17 EEKAFLPAAERGDLASVYRDLEEPKKLNINCPD-------------RLGRSALFVAAIENENLELTELLLNLSC----R-   78 (743)
T ss_pred             HHHHHHHHHHcCCHHHHHHHhccccccCCCCcC-------------ccchhHHHHHHHhcChHHHHHHHHhCCC----C-
Confidence            46788889999999999999988  88888777             45899999 8888889999999998876    1 


Q ss_pred             ccCccccccccchhhhhhccccccccccchhhhhhhchHHHHHHHhhccCCCCCCCCchHHHHHHHcC---CHHHHHHHH
Q 035705          257 RMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCN---NARAVELLL  333 (758)
Q Consensus       257 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~g~t~L~~A~~~g---~~~~v~~Ll  333 (758)
                                                                           +..|.||||.|+..+   ...+++.+.
T Consensus        79 -----------------------------------------------------~~~G~T~Lh~A~~~~~~~v~~ll~~l~  105 (743)
T TIGR00870        79 -----------------------------------------------------GAVGDTLLHAISLEYVDAVEAILLHLL  105 (743)
T ss_pred             -----------------------------------------------------CCcChHHHHHHHhccHHHHHHHHHHHh
Confidence                                                                 235778999888622   223334444


Q ss_pred             HccCC------CCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC--------------CCCCcHHHHHHHc
Q 035705          334 NCAVD------KEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRT--------------AAGETAAMICARY  393 (758)
Q Consensus       334 ~~g~~------~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--------------~~g~t~L~~A~~~  393 (758)
                      ..+.+      .+.........|.||||+|+..|+.++|++|+++|++++.++              ..|.||||.|+..
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~  185 (743)
T TIGR00870       106 AAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACL  185 (743)
T ss_pred             hcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHh
Confidence            33322      111111123568899999999999999999999999988653              2588999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhccc-----ccchHHHHHHHHHcCCC---c----ccCCCCCCcHHHHHH
Q 035705          394 KHEECLKFLASEGADLGLINYAGQCANSIAKSSRW-----TLGFQQAVVDSIRSGNI---I----QSSNASRFSPLMFVT  461 (758)
Q Consensus       394 g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~-----~~~~~~~~~~ll~~g~~---~----~~~~~~~~t~L~~a~  461 (758)
                      |+.+++++|+++|++++..|..|+||+|+|+....     ......+.+.+++.+..   .    +..|..|.||||.|+
T Consensus       186 ~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~  265 (743)
T TIGR00870       186 GSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAA  265 (743)
T ss_pred             CCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhh
Confidence            99999999999999999999999999999977641     11123344444444433   3    556889999999999


Q ss_pred             HcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHc--------CCHHHHHHHHhCCC
Q 035705          462 QANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAA--------GHVEAFRLLLHAGA  511 (758)
Q Consensus       462 ~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~--------g~~~~v~~Ll~~g~  511 (758)
                      ..|+.++++.|++. +............|.+.+...        ....+++.++..++
T Consensus       266 ~~g~~~l~~lLL~~-~~~~kk~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~  322 (743)
T TIGR00870       266 KEGRIVLFRLKLAI-KYKQKKFVAWPNGQQLLSLYWLEELDGWRRKQSVLELIVVFVI  322 (743)
T ss_pred             hcCCccHHHHHHHH-HHhcceeeccCcchHhHhhhccccCCcccccccHHHHHHHHHH
Confidence            99999999999996 344444444555666655432        22245566665543

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.90  E-value=6.5e-23  Score=237.47  Aligned_cols=191  Identities=21%  Similarity=0.252  Sum_probs=133.8

Q ss_pred             CCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 035705          324 NNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLA  403 (758)
Q Consensus       324 g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll  403 (758)
                      ...++-..+.+.+...      .+..+.++|+.||..|+.++++.|++.|+++|..|..|+||||+|+..|+.+++++|+
T Consensus       505 ~~l~v~~ll~~~~~~~------~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll  578 (823)
T PLN03192        505 HDLNVGDLLGDNGGEH------DDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLL  578 (823)
T ss_pred             ccccHHHHHhhccccc------CCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHH
Confidence            3444445555544331      2344567777777777777777777777777777777777777777777777777777


Q ss_pred             HCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccc
Q 035705          404 SEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQ  483 (758)
Q Consensus       404 ~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~  483 (758)
                      ++|++++.+|..|.||||+|+    ..++.++++.|++.+...+.  ..+.++||.|+..|+.++++.|+++ |+++|.+
T Consensus       579 ~~gadin~~d~~G~TpL~~A~----~~g~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~-Gadin~~  651 (823)
T PLN03192        579 KHACNVHIRDANGNTALWNAI----SAKHHKIFRILYHFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQ-GLNVDSE  651 (823)
T ss_pred             hcCCCCCCcCCCCCCHHHHHH----HhCCHHHHHHHHhcCcccCc--ccCchHHHHHHHhCCHHHHHHHHHC-CCCCCCC
Confidence            777777777767766666663    23455556665555544332  2345788888888888888888887 7888888


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCC-CcHHHHH
Q 035705          484 DADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYG-ETAITLA  527 (758)
Q Consensus       484 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g-~t~L~~A  527 (758)
                      |.+|.||||+|+..|+.+++++|+++|++++..+..| .||+.++
T Consensus       652 d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~  696 (823)
T PLN03192        652 DHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELR  696 (823)
T ss_pred             CCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCCCCCCCCCHHHHH
Confidence            8888888888888888888888888888888887777 7777665

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.89  E-value=1.9e-22  Score=202.73  Aligned_cols=232  Identities=27%  Similarity=0.390  Sum_probs=179.3

Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 035705          315 TLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYK  394 (758)
Q Consensus       315 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g  394 (758)
                      -.+.-|+..|..+-|..|+..|++++.    .+.+|.|+||.+|...+.+||++|+++|++||..|..|+||||.|+..|
T Consensus        42 a~~l~A~~~~d~~ev~~ll~~ga~~~~----~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg  117 (527)
T KOG0505|consen   42 AVFLEACSRGDLEEVRKLLNRGASPNL----CNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCG  117 (527)
T ss_pred             HHHHhccccccHHHHHHHhccCCCccc----cCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccc
Confidence            345678899999999999999988865    7899999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 035705          395 HEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIE  474 (758)
Q Consensus       395 ~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~  474 (758)
                      +..++++|+++|+++...+.+|..|...+...                                     ...+++..-..
T Consensus       118 ~~~i~~~li~~gA~~~avNsdg~~P~dl~e~e-------------------------------------a~~~~l~~~~~  160 (527)
T KOG0505|consen  118 YLNIVEYLIQHGANLLAVNSDGNMPYDLAEDE-------------------------------------ATLDVLETEMA  160 (527)
T ss_pred             cHHHHHHHHHhhhhhhhccCCCCCccccccCc-------------------------------------chhHHHHHHHH
Confidence            99999999999999988888887776665221                                     11112222222


Q ss_pred             hcCCCCccc-CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCC
Q 035705          475 WADVDLDEQ-DADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSA  553 (758)
Q Consensus       475 ~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~  553 (758)
                      ..+++++.. .....+-         .+=++..+..|.+                                  .+..+..
T Consensus       161 r~gi~iea~R~~~e~~m---------l~D~~q~l~~G~~----------------------------------~d~~~~r  197 (527)
T KOG0505|consen  161 RQGIDIEAARKAEEQTM---------LDDARQWLNAGAE----------------------------------LDARHAR  197 (527)
T ss_pred             HhcccHHHHhhhhHHHH---------HHHHHHHHhcccc----------------------------------ccccccc
Confidence            212221110 0000000         0111112223433                                  3344445


Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHC
Q 035705          554 GFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALAREN  630 (758)
Q Consensus       554 g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~  630 (758)
                      |-|.||.|+..|..++.++|+++|.+++.+|.+||||||.|+..|..+++++|+++|++.+.....|.||+.+|...
T Consensus       198 G~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~dee  274 (527)
T KOG0505|consen  198 GATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADEE  274 (527)
T ss_pred             cchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhhh
Confidence            77888888999999999999999999999999999999999999999999999999999999999999999998753

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.89  E-value=9e-23  Score=205.09  Aligned_cols=217  Identities=24%  Similarity=0.298  Sum_probs=178.4

Q ss_pred             HHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Q 035705          433 QQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGAN  512 (758)
Q Consensus       433 ~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~  512 (758)
                      .+-+..|+..|+.++..+.+|.|+||.++.-.+.++|++|+++ |++||..|..|+||||.|+..|+..++++|+.+|++
T Consensus        53 ~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~-ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~  131 (527)
T KOG0505|consen   53 LEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVEN-GANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGAN  131 (527)
T ss_pred             HHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHh-cCCccccccccCCcchhhcccccHHHHHHHHHhhhh
Confidence            3333344444444455566677899999999999999999999 899999999999999999999999999999999999


Q ss_pred             CCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHc----CCHHHHHHHHhcCCCCCCCCCCCC
Q 035705          513 IKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKR----GDFDLVHTLVSRCYDVNASDADGY  588 (758)
Q Consensus       513 ~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~----g~~~~v~~Ll~~ga~~n~~d~~g~  588 (758)
                      +...+..|..|+..+...-..+++..-....+++++            |++.    -..+=++..+..|.+.+..+..|.
T Consensus       132 ~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~ie------------a~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~  199 (527)
T KOG0505|consen  132 LLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIE------------AARKAEEQTMLDDARQWLNAGAELDARHARGA  199 (527)
T ss_pred             hhhccCCCCCccccccCcchhHHHHHHHHHhcccHH------------HHhhhhHHHHHHHHHHHHhccccccccccccc
Confidence            999999999999888766666665544444443321            1211    122334455568999999998899


Q ss_pred             cHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCccccccccCCCcchH
Q 035705          589 TPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHTKCGKGSPHV  668 (758)
Q Consensus       589 tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~~~~~d~~g~t~l~~  668 (758)
                      |.||.|+..|..++.++|+++|.+++++|.+|+||||.|+-.|..+         +.++|+++|++++...+.|.||+.+
T Consensus       200 T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~---------~~elL~~~ga~~d~~t~~g~~p~dv  270 (527)
T KOG0505|consen  200 TALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQED---------ACELLVEHGADMDAKTKMGETPLDV  270 (527)
T ss_pred             hHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHh---------HHHHHHHhhcccchhhhcCCCCccc
Confidence            9999999999999999999999999999999999999999999986         5668999999999999999999988


Q ss_pred             HHH
Q 035705          669 KLL  671 (758)
Q Consensus       669 a~~  671 (758)
                      |.-
T Consensus       271 ~de  273 (527)
T KOG0505|consen  271 ADE  273 (527)
T ss_pred             hhh
Confidence            765

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.88  E-value=2e-22  Score=191.72  Aligned_cols=160  Identities=29%  Similarity=0.416  Sum_probs=135.5

Q ss_pred             CcccCCCCCcHHHHHHHcCCHHHHHHHHhCC-CCCCcCCCCCCcHHHHHHH-----cCChhHHHHHHHhhccccCCCCCC
Q 035705          480 LDEQDADGFSAAMIAAAAGHVEAFRLLLHAG-ANIKLQNKYGETAITLAEL-----NRNGEVLEQVILEYALEEGQKGSA  553 (758)
Q Consensus       480 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~-----~~~~~~v~~ll~~~~~~~~~~~~~  553 (758)
                      +|..|.+|+|+|||++.+.++++|+.||+.| ++++..++-|.||+++++.     ..+.++|..|+.-...+... ...
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKA-sQ~  339 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKA-SQH  339 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhh-hhh
Confidence            4566788888888888888888888888775 6788888888888888765     34667777776544333322 358


Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHh-CCCCCCCCCCCCCcHHHHHHHCCC
Q 035705          554 GFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLIS-SGAKCDIENARNETALALARENGN  632 (758)
Q Consensus       554 g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~-~gad~~~~d~~g~t~L~~A~~~~~  632 (758)
                      |+|+|++|+.+|+.++|+.||..|+|||.+|.+|.|+|++|+..||.+|+++||. -+.|+...|.+|-|+|.+|.+.|+
T Consensus       340 gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh  419 (452)
T KOG0514|consen  340 GQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGH  419 (452)
T ss_pred             cchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCc
Confidence            9999999999999999999999999999999999999999999999999999998 479999999999999999999999


Q ss_pred             hhhHHHHH
Q 035705          633 GNEAENVI  640 (758)
Q Consensus       633 ~~~~~~ll  640 (758)
                      .++.-.|.
T Consensus       420 ~eIa~mlY  427 (452)
T KOG0514|consen  420 REIAVMLY  427 (452)
T ss_pred             hHHHHHHH
Confidence            99766543

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.87  E-value=1.3e-21  Score=180.40  Aligned_cols=145  Identities=18%  Similarity=0.093  Sum_probs=89.4

Q ss_pred             CCCCcCCCCCCcHHHHHHHcCChhHHHH---HHHhhccccCCCCCCCchHHHHHHHcCCHH---HHHHHHhcCCCCCCCC
Q 035705          511 ANIKLQNKYGETAITLAELNRNGEVLEQ---VILEYALEEGQKGSAGFYALHRAAKRGDFD---LVHTLVSRCYDVNASD  584 (758)
Q Consensus       511 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~---ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~---~v~~Ll~~ga~~n~~d  584 (758)
                      ++++..+..+.++||.|++.|+.+.+..   ++...+..++..|..|+||||+|+..|+.+   ++++|+++|+++|.+|
T Consensus        11 ~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d   90 (166)
T PHA02743         11 LGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARE   90 (166)
T ss_pred             hHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCC
Confidence            3333344444444444444444422221   122233344444555555555555555433   3677777777777777


Q ss_pred             -CCCCcHHHHHHHcCcHHHHHHHHh-CCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCccccccccC
Q 035705          585 -ADGYTPLMLAAKSGHGSVCQLLIS-SGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHTKCG  662 (758)
Q Consensus       585 -~~g~tpL~~A~~~~~~~iv~~Ll~-~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~~~~~d~~g  662 (758)
                       ..|+||||+|+..++.+++++|++ .|++++.+|..|+||||+|+..++.+         ++++|+++|++++.++..|
T Consensus        91 ~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~---------iv~~Ll~~ga~~~~~~~~~  161 (166)
T PHA02743         91 LGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRR---------MMEILRANGAVCDDPLSIG  161 (166)
T ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHH---------HHHHHHHcCCCCCCcccCC
Confidence             467777777777777777777774 67777777777777777777777764         5557777777777777666


Q ss_pred             CC
Q 035705          663 KG  664 (758)
Q Consensus       663 ~t  664 (758)
                      ..
T Consensus       162 ~~  163 (166)
T PHA02743        162 LS  163 (166)
T ss_pred             cc
Confidence            43

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.87  E-value=2.1e-21  Score=179.00  Aligned_cols=144  Identities=17%  Similarity=0.224  Sum_probs=114.6

Q ss_pred             CCCCcccCCCCCcHHHHHHHcCCH----HHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhH---HHHHHHhhccccCC
Q 035705          477 DVDLDEQDADGFSAAMIAAAAGHV----EAFRLLLHAGANIKLQNKYGETAITLAELNRNGEV---LEQVILEYALEEGQ  549 (758)
Q Consensus       477 ~~~~~~~~~~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~---v~~ll~~~~~~~~~  549 (758)
                      +++++..+.++.++||.|++.|+.    +++++|++.|++++..|..|+||||+|+..|+.+.   ++ +|.+.+.+++.
T Consensus        10 ~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~-~Ll~~Gadin~   88 (166)
T PHA02743         10 NLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIE-LLVNMGADINA   88 (166)
T ss_pred             chHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHH-HHHHcCCCCCC
Confidence            456666667777777777777776    55556667777777777777777777777776654   33 44456677777


Q ss_pred             CC-CCCchHHHHHHHcCCHHHHHHHHh-cCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCC
Q 035705          550 KG-SAGFYALHRAAKRGDFDLVHTLVS-RCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNE  621 (758)
Q Consensus       550 ~~-~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~  621 (758)
                      .+ ..|.||||+|+..++.+++++|++ .|++++.+|..|+||||+|+..++.+++++|+++|++++.++..|.
T Consensus        89 ~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~  162 (166)
T PHA02743         89 RELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGL  162 (166)
T ss_pred             CCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCc
Confidence            76 478889999999999999999995 7999999999999999999999999999999999999999887775

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.86  E-value=1.1e-21  Score=186.58  Aligned_cols=167  Identities=23%  Similarity=0.317  Sum_probs=127.0

Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCC
Q 035705          376 INSRTAAGETAAMICARYKHEECLKFLASEG-ADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRF  454 (758)
Q Consensus       376 ~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g-~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~  454 (758)
                      +|..|.+|+|+||||+.++++++|+.||+.| ++++..+..|.||+++++                              
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaA------------------------------  310 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAA------------------------------  310 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHH------------------------------
Confidence            4567777888888888888888888887776 467777777777766663                              


Q ss_pred             cHHHHHHHcCCHHHHHHHHHhcCCCCcccC-CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCh
Q 035705          455 SPLMFVTQANDVDALKKLIEWADVDLDEQD-ADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNG  533 (758)
Q Consensus       455 t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  533 (758)
                        |-..-...+.++|..|++.  .|+|.+- ..|+|+|++|+.+|+.++|+.||..|+|+|.+|.+|.|+|++|+..|+.
T Consensus       311 --LA~lk~~~d~~vV~~LF~m--gnVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhk  386 (452)
T KOG0514|consen  311 --LAKLKQPADRTVVERLFKM--GDVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHK  386 (452)
T ss_pred             --HHhhcchhhHHHHHHHHhc--cCcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChH
Confidence              2222233456778888876  3666553 5688999999999999999999999999999988888888888888888


Q ss_pred             hHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhc
Q 035705          534 EVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSR  576 (758)
Q Consensus       534 ~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  576 (758)
                      |+++.||....++....|.+|.|+|.+|...|+.+|.-+|..+
T Consensus       387 EivklLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  387 EIVKLLLAVPSCDISLTDVDGSTALSIALEAGHREIAVMLYAH  429 (452)
T ss_pred             HHHHHHhccCcccceeecCCCchhhhhHHhcCchHHHHHHHHH
Confidence            8888888888888888888888888888888888877776543

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.85  E-value=6.9e-21  Score=161.97  Aligned_cols=140  Identities=24%  Similarity=0.248  Sum_probs=109.3

Q ss_pred             HHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHH
Q 035705          524 ITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVC  603 (758)
Q Consensus       524 L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv  603 (758)
                      +.+|+..+....|+.||......++.+|.+|+||||.|+.+|+.+||+.|+..|++++++...||||||-||..++.+++
T Consensus        67 ~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va  146 (228)
T KOG0512|consen   67 LLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVA  146 (228)
T ss_pred             HHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhHH
Confidence            45677777777777777777777888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCccccccccCCCcchHHH
Q 035705          604 QLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHTKCGKGSPHVKL  670 (758)
Q Consensus       604 ~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~~~~~d~~g~t~l~~a~  670 (758)
                      .+||++|+|||+..+...||||+|+...+....       +..+|...+.++-.++..+.||+.+|-
T Consensus       147 ~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t-------~~~Ll~dryi~pg~~nn~eeta~~iAR  206 (228)
T KOG0512|consen  147 GRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDT-------LELLLHDRYIHPGLKNNLEETAFDIAR  206 (228)
T ss_pred             HHHHhccCcccccccccchhhHHhhcccchHHH-------HHHHhhccccChhhhcCccchHHHHHH
Confidence            888888888888888888888888877665432       122344557777788888888887763

>PHA02741 hypothetical protein; Provisional

Probab=99.84  E-value=1.9e-20  Score=173.66  Aligned_cols=124  Identities=23%  Similarity=0.263  Sum_probs=92.2

Q ss_pred             CCCCCCcHHHHHHHcCChhHHHHHHHh-----hccccCCCCCCCchHHHHHHHcCC----HHHHHHHHhcCCCCCCCCC-
Q 035705          516 QNKYGETAITLAELNRNGEVLEQVILE-----YALEEGQKGSAGFYALHRAAKRGD----FDLVHTLVSRCYDVNASDA-  585 (758)
Q Consensus       516 ~~~~g~t~L~~A~~~~~~~~v~~ll~~-----~~~~~~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~ga~~n~~d~-  585 (758)
                      ++..|.||||+|+..|+.++++.|+..     .+.+++..|..|+||||+|+..|+    .+++++|+++|+++|.++. 
T Consensus        17 ~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~   96 (169)
T PHA02741         17 KNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEML   96 (169)
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcC
Confidence            344444555555555555544444321     234555666677777777777776    5888999999999999885 


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHh-CCCCCCCCCCCCCcHHHHHHHCCChhhHHHH
Q 035705          586 DGYTPLMLAAKSGHGSVCQLLIS-SGAKCDIENARNETALALARENGNGNEAENV  639 (758)
Q Consensus       586 ~g~tpL~~A~~~~~~~iv~~Ll~-~gad~~~~d~~g~t~L~~A~~~~~~~~~~~l  639 (758)
                      .|+||||+|+..++.+++++|++ .|++++.+|..|+||||+|+..++.++++.|
T Consensus        97 ~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L  151 (169)
T PHA02741         97 EGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQIL  151 (169)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHH
Confidence            89999999999999999999997 5999999999999999999999988755543

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.82  E-value=4.2e-20  Score=169.20  Aligned_cols=99  Identities=20%  Similarity=0.236  Sum_probs=85.8

Q ss_pred             CCCCCCchHHHHHHHcCCH---HHHHHHHhcCCCCCCCC-CCCCcHHHHHHHcCcHHHHHHHHh-CCCCCCCCCCCCCcH
Q 035705          549 QKGSAGFYALHRAAKRGDF---DLVHTLVSRCYDVNASD-ADGYTPLMLAAKSGHGSVCQLLIS-SGAKCDIENARNETA  623 (758)
Q Consensus       549 ~~~~~g~t~L~~A~~~g~~---~~v~~Ll~~ga~~n~~d-~~g~tpL~~A~~~~~~~iv~~Ll~-~gad~~~~d~~g~t~  623 (758)
                      ..|..|.||||+|+..|+.   +++++|++.|+++|.+| ..|+||||+|+..++.+++++|++ .|++++.+|..|+||
T Consensus        50 ~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tp  129 (154)
T PHA02736         50 EYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTP  129 (154)
T ss_pred             HhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCH
Confidence            4577888999999988876   46889999999999998 489999999999999999999997 599999999999999


Q ss_pred             HHHHHHCCChhhHHHHHHHHHHHHHHhCCCccc
Q 035705          624 LALARENGNGNEAENVILDELALTLVLDGTYVK  656 (758)
Q Consensus       624 L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~~~  656 (758)
                      ||+|+..++.+         ++++|+++|++++
T Consensus       130 L~~A~~~~~~~---------i~~~Ll~~ga~~~  153 (154)
T PHA02736        130 YYVACERHDAK---------MMNILRAKGAQCK  153 (154)
T ss_pred             HHHHHHcCCHH---------HHHHHHHcCCCCC
Confidence            99999999886         5667888888765

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.82  E-value=1.4e-19  Score=154.07  Aligned_cols=144  Identities=27%  Similarity=0.401  Sum_probs=117.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhH
Q 035705          456 PLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEV  535 (758)
Q Consensus       456 ~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~  535 (758)
                      .+.+|+..+....|+.||+...-.+|.+|.+|.||||.|+.+|+.+||+.|+..|++++.+..                 
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~-----------------  128 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTN-----------------  128 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccc-----------------
Confidence            456778888888888888776566788888888888888888888888888888877766554                 


Q ss_pred             HHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCc-HHHHHHHHh-CCCCC
Q 035705          536 LEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGH-GSVCQLLIS-SGAKC  613 (758)
Q Consensus       536 v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~-~~iv~~Ll~-~gad~  613 (758)
                                       .|+||||.||+.++.+++.+||++|+|||+......||||+|+...+ ...+.+|+. .+.++
T Consensus       129 -----------------~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~p  191 (228)
T KOG0512|consen  129 -----------------EGWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHP  191 (228)
T ss_pred             -----------------cCccchhhhhcccchhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccCh
Confidence                             56677888888899999999999999999999999999999997765 456666654 78899


Q ss_pred             CCCCCCCCcHHHHHHHCCCh
Q 035705          614 DIENARNETALALARENGNG  633 (758)
Q Consensus       614 ~~~d~~g~t~L~~A~~~~~~  633 (758)
                      -..+..+.||+.+|-+.+..
T Consensus       192 g~~nn~eeta~~iARRT~~s  211 (228)
T KOG0512|consen  192 GLKNNLEETAFDIARRTSMS  211 (228)
T ss_pred             hhhcCccchHHHHHHHhhhh
Confidence            99999999999999887654

>PHA02741 hypothetical protein; Provisional

Probab=99.82  E-value=1.7e-19  Score=167.38  Aligned_cols=131  Identities=24%  Similarity=0.301  Sum_probs=90.1

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHh------CCCCCCcCCCCCCcHHHHHHHcCCh----hHHHHHHHhhccccCCCCC
Q 035705          483 QDADGFSAAMIAAAAGHVEAFRLLLH------AGANIKLQNKYGETAITLAELNRNG----EVLEQVILEYALEEGQKGS  552 (758)
Q Consensus       483 ~~~~g~t~L~~A~~~g~~~~v~~Ll~------~g~~~~~~~~~g~t~L~~A~~~~~~----~~v~~ll~~~~~~~~~~~~  552 (758)
                      ++..|.||||+|+..|+.++++.|+.      .|++++.+|..|+||||+|+..|+.    +++++|+ ..+.+++..+.
T Consensus        17 ~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll-~~gadin~~~~   95 (169)
T PHA02741         17 KNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLI-ELGADINAQEM   95 (169)
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHH-HcCCCCCCCCc
Confidence            45556666666666666666665532      2455666666666666666666652    4444443 34555566553


Q ss_pred             -CCchHHHHHHHcCCHHHHHHHHh-cCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCC
Q 035705          553 -AGFYALHRAAKRGDFDLVHTLVS-RCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCD  614 (758)
Q Consensus       553 -~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~  614 (758)
                       .|+||||+|+..++.+++++|++ .|++++..|..|+||||+|+..++.+++++|++.++...
T Consensus        96 ~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~~~  159 (169)
T PHA02741         96 LEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVATSR  159 (169)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHhc
Confidence             67788888888888888888887 488888888888888888888888888888888766543

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.81  E-value=6.6e-19  Score=174.48  Aligned_cols=153  Identities=19%  Similarity=0.205  Sum_probs=115.9

Q ss_pred             chHHHHHHhcCCHHHHHHHHhCCCCCCcchhhhhhccccccccCCCCchhHHHHhcCCHHHHHHHHHcCCCCccccccCc
Q 035705          181 VHALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGA  260 (758)
Q Consensus       181 ~t~L~~A~~~g~~~iv~~Ll~~g~d~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~  260 (758)
                      .++|+.|+..|+.+++++|+++|+|+|..+..         ....|.||||+|+..++.+++++|+++|++++..+    
T Consensus        34 ~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~---------sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~----  100 (300)
T PHA02884         34 ANILYSSIKFHYTDIIDAILKLGADPEAPFPL---------SENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYA----  100 (300)
T ss_pred             CHHHHHHHHcCCHHHHHHHHHCCCCccccCcc---------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCccc----
Confidence            34677777778889999999999888876310         00258888888888888888888888888888642    


Q ss_pred             cccccccchhhhhhccccccccccchhhhhhhchHHHHHHHhhccCCCCCCCCchHHHHHHHcCCHHHHHHHHHccCCCC
Q 035705          261 WSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCNNARAVELLLNCAVDKE  340 (758)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~  340 (758)
                                                                       +..|.||||.|+..|+.+++++|++.|++++
T Consensus       101 -------------------------------------------------~~~g~TpLh~Aa~~~~~eivklLL~~GAdin  131 (300)
T PHA02884        101 -------------------------------------------------EEAKITPLYISVLHGCLKCLEILLSYGADIN  131 (300)
T ss_pred             -------------------------------------------------CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence                                                             2357788888888888888888888888887


Q ss_pred             CCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCC
Q 035705          341 FPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGA  407 (758)
Q Consensus       341 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~  407 (758)
                      .    .+..|.||||+|+..++.+++..+.  |..   .+..+.+|++++   ++.+++++|+++++
T Consensus       132 ~----kd~~G~TpL~~A~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~---~n~ei~~~Lish~v  186 (300)
T PHA02884        132 I----QTNDMVTPIELALMICNNFLAFMIC--DNE---ISNFYKHPKKIL---INFDILKILVSHFI  186 (300)
T ss_pred             C----CCCCCCCHHHHHHHhCChhHHHHhc--CCc---ccccccChhhhh---ccHHHHHHHHHHHH
Confidence            6    6778888888888888888775554  222   355567777764   46788888888765

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.80  E-value=2.3e-19  Score=164.31  Aligned_cols=131  Identities=20%  Similarity=0.296  Sum_probs=88.4

Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHhCCC--C-----CCcCCCCCCcHHHHHHHcCChhH---HHHHHHhhccccCCC
Q 035705          481 DEQDADGFSAAMIAAAAGHVEAFRLLLHAGA--N-----IKLQNKYGETAITLAELNRNGEV---LEQVILEYALEEGQK  550 (758)
Q Consensus       481 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~--~-----~~~~~~~g~t~L~~A~~~~~~~~---v~~ll~~~~~~~~~~  550 (758)
                      +.+|..|.||||+|+..|+.  +.++...+.  +     ++.+|..|+||||+|+..|+.+.   ++ +|.+.+.+++..
T Consensus        11 ~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~-~Ll~~gadin~~   87 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLK-LLMEWGADINGK   87 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHH-HHHHcCCCcccc
Confidence            33455566666666666652  222222111  1     12345566666666666665532   33 333445566666


Q ss_pred             C-CCCchHHHHHHHcCCHHHHHHHHh-cCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCC
Q 035705          551 G-SAGFYALHRAAKRGDFDLVHTLVS-RCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCD  614 (758)
Q Consensus       551 ~-~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~  614 (758)
                      + ..|.||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..++.+++++|+++|++++
T Consensus        88 ~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         88 ERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            5 377788888888888899999987 489999999999999999999999999999999998875

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.79  E-value=2.2e-18  Score=170.80  Aligned_cols=151  Identities=13%  Similarity=0.089  Sum_probs=113.2

Q ss_pred             ccCCCCCc-HHHHHHHcCCHHHHHHHHhCCCCCCcCC----CCCCcHHHHHHHcCChhHHHHHHHhhccccCCC-CCCCc
Q 035705          482 EQDADGFS-AAMIAAAAGHVEAFRLLLHAGANIKLQN----KYGETAITLAELNRNGEVLEQVILEYALEEGQK-GSAGF  555 (758)
Q Consensus       482 ~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~~~----~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~-~~~g~  555 (758)
                      .+|..+.| +||.|+..|+.+++++|+++|++++.++    ..|.||||+|+..++.++++.|+ +.|++++.. +..|.
T Consensus        27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL-~~GADVN~~~~~~g~  105 (300)
T PHA02884         27 KKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLI-RYGADVNRYAEEAKI  105 (300)
T ss_pred             ccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCcCcccCCCCC
Confidence            34555555 4555566677888888888888877763    46788888888888888777665 456777764 45788


Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhh
Q 035705          556 YALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNE  635 (758)
Q Consensus       556 t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~  635 (758)
                      ||||.|+..++.+++++|+++|++++.+|..|.||||+|+..++.+++.++.  |..   .+..+.+|++++.   +.++
T Consensus       106 TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~---n~ei  177 (300)
T PHA02884        106 TPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMIC--DNE---ISNFYKHPKKILI---NFDI  177 (300)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhc--CCc---ccccccChhhhhc---cHHH
Confidence            9999999999999999999999999999999999999999989888876665  322   4567788888763   4555


Q ss_pred             HHHHHH
Q 035705          636 AENVIL  641 (758)
Q Consensus       636 ~~~ll~  641 (758)
                      ++.|+.
T Consensus       178 ~~~Lis  183 (300)
T PHA02884        178 LKILVS  183 (300)
T ss_pred             HHHHHH
Confidence            554443

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.78  E-value=1.2e-19  Score=167.09  Aligned_cols=118  Identities=28%  Similarity=0.338  Sum_probs=76.5

Q ss_pred             CCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCC
Q 035705          509 AGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGY  588 (758)
Q Consensus       509 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~  588 (758)
                      ..-|.|.-|..|.+|||+|++.|+..+++.|+ ..+..++..+....||||+|+..|+.++|+.|++..+|+|+.+..|+
T Consensus        23 tehdln~gddhgfsplhwaakegh~aivemll-~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgn  101 (448)
T KOG0195|consen   23 TEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLL-SRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGN  101 (448)
T ss_pred             cccccccccccCcchhhhhhhcccHHHHHHHH-hcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCC
Confidence            34555666666666666666666666666443 44555666666666666666666666666666666666666666666


Q ss_pred             cHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHH
Q 035705          589 TPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALA  627 (758)
Q Consensus       589 tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A  627 (758)
                      |||||||..|...+++-|+..||-+++.|+.|.|||..|
T Consensus       102 tplhyacfwgydqiaedli~~ga~v~icnk~g~tpldka  140 (448)
T KOG0195|consen  102 TPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKA  140 (448)
T ss_pred             CchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhh
Confidence            666666666666666666666666666666666666655

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.74  E-value=1.3e-17  Score=176.60  Aligned_cols=186  Identities=22%  Similarity=0.211  Sum_probs=141.2

Q ss_pred             cccCCCCCCcHHHHHHH---cCCHHHHHHHHHhcCCCCcc----cCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCC
Q 035705          446 IQSSNASRFSPLMFVTQ---ANDVDALKKLIEWADVDLDE----QDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNK  518 (758)
Q Consensus       446 ~~~~~~~~~t~L~~a~~---~~~~~~v~~Ll~~~~~~~~~----~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~  518 (758)
                      ++.+...|.|.||.|..   .++.++++.|++..+--+|.    ....|.||||+|+.+.+.++|++|++.|||++.+..
T Consensus       136 ~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~  215 (782)
T KOG3676|consen  136 LNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARAC  215 (782)
T ss_pred             cccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhh
Confidence            34444556667776665   34557888888764433332    235799999999999999999999999999987632


Q ss_pred             CCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcC
Q 035705          519 YGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSG  598 (758)
Q Consensus       519 ~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~  598 (758)
                       |.  +..+-..+...        ...+-...-..|..||..||-.++.+++++|+++|||++.+|..|+|.||..+..-
T Consensus       216 -G~--FF~~~dqk~~r--------k~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~  284 (782)
T KOG3676|consen  216 -GA--FFCPDDQKASR--------KSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHF  284 (782)
T ss_pred             -cc--ccCcccccccc--------cccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHH
Confidence             11  00000000000        00011111256889999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHhCCCC--CCCCCCCCCcHHHHHHHCCChhhHHHHHHH
Q 035705          599 HGSVCQLLISSGAK--CDIENARNETALALARENGNGNEAENVILD  642 (758)
Q Consensus       599 ~~~iv~~Ll~~gad--~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~  642 (758)
                      ..++.++++++|++  ...+|+.|-|||.+|++.|..++.+.++..
T Consensus       285 ~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  285 VTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             HHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            99999999999999  899999999999999999999988776644

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.72  E-value=4.6e-17  Score=133.69  Aligned_cols=89  Identities=33%  Similarity=0.495  Sum_probs=60.7

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHH
Q 035705          558 LHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAE  637 (758)
Q Consensus       558 L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~  637 (758)
                      ||+|++.|+.+++++|++.+.+++.    |+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+++.+   
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~---   73 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLE---   73 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHH---
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHH---
Confidence            5677777777777777777666665    667777777777777777777777777777777777777777777664   


Q ss_pred             HHHHHHHHHHHHhCCCcccccc
Q 035705          638 NVILDELALTLVLDGTYVKKHT  659 (758)
Q Consensus       638 ~ll~~~~~~~L~~~g~~~~~~d  659 (758)
                            ++++|+++|++++.+|
T Consensus        74 ------~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   74 ------IVKLLLEHGADVNIRN   89 (89)
T ss_dssp             ------HHHHHHHTTT-TTSS-
T ss_pred             ------HHHHHHHcCCCCCCcC
Confidence                  4556666777776654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.71  E-value=1e-17  Score=154.54  Aligned_cols=153  Identities=22%  Similarity=0.290  Sum_probs=126.2

Q ss_pred             HcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHH
Q 035705          462 QANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVIL  541 (758)
Q Consensus       462 ~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~  541 (758)
                      +.|+.--|+..|+....|.|.-|..|.+|||+|++.|+..+|+.|+.+|+.+|..+....||||+|+..|+.++|+.|+ 
T Consensus         9 regna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll-   87 (448)
T KOG0195|consen    9 REGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLL-   87 (448)
T ss_pred             hcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHH-
Confidence            4444444444455446788899999999999999999999999999999999999998899999999999999998766 


Q ss_pred             hhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCC
Q 035705          542 EYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDI  615 (758)
Q Consensus       542 ~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~  615 (758)
                      +...+++..+..|+|||||||..|+..+.+-|+..|+.++..+++|.|||..|--.-...+.+.--++|-++|.
T Consensus        88 ~~kadvnavnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp~l~~~l~e~aek~gq~~nr  161 (448)
T KOG0195|consen   88 SRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPNR  161 (448)
T ss_pred             HHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhchHHHHHHHHHHHHhCCCCCc
Confidence            45678999999999999999999999999999999999999999999999987533333333333446777763

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.70  E-value=1.4e-16  Score=130.70  Aligned_cols=89  Identities=30%  Similarity=0.428  Sum_probs=81.5

Q ss_pred             HHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCH
Q 035705          317 IHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHE  396 (758)
Q Consensus       317 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~  396 (758)
                      ||+|++.|+.+++++|++.+.+++.        |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~--------~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   72 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL--------GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNL   72 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS--------SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC--------CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCH
Confidence            7999999999999999998877652        88999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCCCCcc
Q 035705          397 ECLKFLASEGADLGLIN  413 (758)
Q Consensus       397 ~iv~~Ll~~g~~~~~~~  413 (758)
                      +++++|+++|++++.+|
T Consensus        73 ~~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   73 EIVKLLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHHHHHTTT-TTSS-
T ss_pred             HHHHHHHHcCCCCCCcC
Confidence            99999999999998764

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.68  E-value=7e-16  Score=163.72  Aligned_cols=213  Identities=20%  Similarity=0.203  Sum_probs=163.7

Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCC-----CCCCcccCCCCCCcHHHHHHHc---CCHHHHHHHHHcCCC-CC---C-CCC
Q 035705          315 TLIHHAILCNNARAVELLLNCAVD-----KEFPVQTYSKTELRPIHLAARL---GSAKILRRLISAGCN-IN---S-RTA  381 (758)
Q Consensus       315 t~L~~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~-~~---~-~~~  381 (758)
                      .++..|...+..+....|+..+-.     ....++.+...|.|.||.|.-+   ++.++++.|++.-.. +|   . ...
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            677888888888888777765421     1223444678899999999874   557899999986321 22   1 234


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHH
Q 035705          382 AGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVT  461 (758)
Q Consensus       382 ~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~  461 (758)
                      .|.||||+|+.+.+.++|++|++.|||++.+-.-..          .........+    ..-+..-.-..|..||.+|+
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~F----------F~~~dqk~~r----k~T~Y~G~~YfGEyPLSfAA  248 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACGAF----------FCPDDQKASR----KSTNYTGYFYFGEYPLSFAA  248 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccc----------cCcccccccc----cccCCcceeeeccCchHHHH
Confidence            699999999999999999999999999976421000          0000000000    00111112246789999999


Q ss_pred             HcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCC--CCcCCCCCCcHHHHHHHcCChhHHHHH
Q 035705          462 QANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGAN--IKLQNKYGETAITLAELNRNGEVLEQV  539 (758)
Q Consensus       462 ~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~l  539 (758)
                      -.++.|++++|+++ |+|++.+|..|+|.||..+..-..++.++++++|++  ...+|..|.|||.+|++-|..++++.+
T Consensus       249 C~nq~eivrlLl~~-gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~i  327 (782)
T KOG3676|consen  249 CTNQPEIVRLLLAH-GADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHI  327 (782)
T ss_pred             HcCCHHHHHHHHhc-CCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHH
Confidence            99999999999997 899999999999999999999999999999999999  889999999999999999999999999


Q ss_pred             HHh
Q 035705          540 ILE  542 (758)
Q Consensus       540 l~~  542 (758)
                      ++.
T Consensus       328 le~  330 (782)
T KOG3676|consen  328 LER  330 (782)
T ss_pred             HHh
Confidence            987

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.63  E-value=5.1e-15  Score=130.82  Aligned_cols=121  Identities=40%  Similarity=0.593  Sum_probs=84.0

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHH
Q 035705          484 DADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK  563 (758)
Q Consensus       484 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~  563 (758)
                      +.+|.||||+|+..++.+++++|++.|.+.+.                                  .+..|.||||.|+.
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~----------------------------------~~~~g~~~l~~a~~   49 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADVNA----------------------------------KDNDGRTPLHLAAK   49 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCc----------------------------------cCCCCCcHHHHHHH
Confidence            45566666666666666666666666655443                                  44455566666777


Q ss_pred             cCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHH
Q 035705          564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAEN  638 (758)
Q Consensus       564 ~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~  638 (758)
                      .++.+++++|++.|++++..+..|.||+|+|+..++.+++++|+++|.+++..|..|.||+++|...++.+++++
T Consensus        50 ~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  124 (126)
T cd00204          50 NGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKL  124 (126)
T ss_pred             cCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHH
Confidence            777777777777777777777777777777777777777777777777777777777777777777777665543

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.63  E-value=7.1e-15  Score=129.91  Aligned_cols=124  Identities=39%  Similarity=0.614  Sum_probs=99.6

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHH
Q 035705          449 SNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAE  528 (758)
Q Consensus       449 ~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  528 (758)
                      .+..|.||||+|+..++.+++++|++. +.+.+..+..|.||||.|+..++.+++++|++.|++++..+..|.       
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~-~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~-------   74 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLEN-GADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGN-------   74 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCC-------
Confidence            457899999999999999999999998 677789999999999999999999999999999986665555444       


Q ss_pred             HcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHH
Q 035705          529 LNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLI  607 (758)
Q Consensus       529 ~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll  607 (758)
                                                 ||+|.|+..++.+++++|+++|.+++..+..|.||+++|...++.+++++|+
T Consensus        75 ---------------------------~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          75 ---------------------------TPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             ---------------------------CHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence                                       5555566666666666666666677777777777777777777777777663

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.60  E-value=5.6e-15  Score=112.08  Aligned_cols=104  Identities=24%  Similarity=0.303  Sum_probs=94.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 035705          315 TLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYK  394 (758)
Q Consensus       315 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g  394 (758)
                      .-+.+++++|.++-|+..+..|.++|.     ...|++|||+|+-.|+.+++++|+..|++++.+|.+|-|||..|+..|
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~-----~~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEG   78 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNE-----IYGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEG   78 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHH-----HhCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHh
Confidence            456789999999999999999988774     358999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCCCCcccCCCCHHHHH
Q 035705          395 HEECLKFLASEGADLGLINYAGQCANSIA  423 (758)
Q Consensus       395 ~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a  423 (758)
                      |.++|++|+++|++-.....+|.+.+..+
T Consensus        79 H~~cVklLL~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   79 HRDCVKLLLQNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             hHHHHHHHHHcCcccceeCCCchhHHhhc
Confidence            99999999999999888888887765544

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.59  E-value=5e-15  Score=112.32  Aligned_cols=103  Identities=24%  Similarity=0.321  Sum_probs=88.0

Q ss_pred             HHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHH
Q 035705          523 AITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSV  602 (758)
Q Consensus       523 ~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~i  602 (758)
                      -+.|++++|..+-|+..+.+. .+++..- .|++|||+|+-.|+.+++++|+..|++++.+|+.|-|||..|+..||.++
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g-~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~c   82 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEG-LNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDC   82 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHcc-ccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHH
Confidence            456777777777777666554 3443332 78999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCcHHHHH
Q 035705          603 CQLLISSGAKCDIENARNETALALA  627 (758)
Q Consensus       603 v~~Ll~~gad~~~~d~~g~t~L~~A  627 (758)
                      |++||+.|||-..+..+|.+.+..+
T Consensus        83 VklLL~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   83 VKLLLQNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             HHHHHHcCcccceeCCCchhHHhhc
Confidence            9999999999999999997776544

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.51  E-value=1.8e-14  Score=105.13  Aligned_cols=55  Identities=40%  Similarity=0.560  Sum_probs=32.9

Q ss_pred             HHhcC-CCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHH
Q 035705          573 LVSRC-YDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALA  627 (758)
Q Consensus       573 Ll~~g-a~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A  627 (758)
                      ||++| +++|.+|..|+||||+|+..|+.+++++|++.|+|++.+|.+|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            67888 99999999999999999999999999999999999999999999999987

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.50  E-value=5.8e-13  Score=131.85  Aligned_cols=133  Identities=33%  Similarity=0.401  Sum_probs=110.3

Q ss_pred             CCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCC-----hhHHHHHHHhhc--cccCCC
Q 035705          478 VDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRN-----GEVLEQVILEYA--LEEGQK  550 (758)
Q Consensus       478 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~-----~~~v~~ll~~~~--~~~~~~  550 (758)
                      ......+..+.++++.++..+..+++++++..|++++.++..|.||||+|+..++     .++++.|+....  ...+..
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~  143 (235)
T COG0666          64 RHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLR  143 (235)
T ss_pred             cccccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCcccc
Confidence            3445566678899999999999999999999999999999999999999999888     777777776666  466667


Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCC
Q 035705          551 GSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSG  610 (758)
Q Consensus       551 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~g  610 (758)
                      |..|.||||+|+..|+.+++++|++.|++++.++..|.|+++.|+..++.++++.|++.+
T Consensus       144 ~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         144 DEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            888888888888888888888888888888888888888888888888888888888865

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.44  E-value=1.1e-12  Score=121.52  Aligned_cols=118  Identities=29%  Similarity=0.385  Sum_probs=103.3

Q ss_pred             CcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCC-CCCCCCcHHHHHHHcCc
Q 035705          521 ETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNA-SDADGYTPLMLAAKSGH  599 (758)
Q Consensus       521 ~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~-~d~~g~tpL~~A~~~~~  599 (758)
                      ..||.-++..+..+-...||.. ...++..|..|+|+|..|+..|+.+++++||+.|+|+|. ++..+.||||+|+..|+
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~-vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn   91 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLST-VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGN   91 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHH-hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCC
Confidence            4566667777777766666654 445788899999999999999999999999999999996 46788999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHH
Q 035705          600 GSVCQLLISSGAKCDIENARNETALALARENGNGNEAENV  639 (758)
Q Consensus       600 ~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~l  639 (758)
                      .++.++|++.|+.+...|.-|+|+-.+|+.-|+.++|..+
T Consensus        92 ~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iI  131 (396)
T KOG1710|consen   92 QDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAII  131 (396)
T ss_pred             chHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHH
Confidence            9999999999999999999999999999999999988754

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.43  E-value=4e-12  Score=125.75  Aligned_cols=126  Identities=25%  Similarity=0.332  Sum_probs=112.9

Q ss_pred             CCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCC-----HHHHHHHHhcCC---CCCCCC
Q 035705          513 IKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGD-----FDLVHTLVSRCY---DVNASD  584 (758)
Q Consensus       513 ~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~-----~~~v~~Ll~~ga---~~n~~d  584 (758)
                      ....+..+.++++.++..+..+++.+ +...+.+++..+..|.||||+|+..++     .+++++|++.|+   ..+.+|
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~  144 (235)
T COG0666          66 LAARDLDGRLPLHSAASKGDDKIVKL-LLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRD  144 (235)
T ss_pred             cccCCccccCHHHHHHHcCcHHHHHH-HHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccC
Confidence            34556678999999999999999964 455666669999999999999999999     999999999999   666679


Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHH
Q 035705          585 ADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENV  639 (758)
Q Consensus       585 ~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~l  639 (758)
                      ..|+||||+|+..|+.+++++|++.|++++.++..|.|+++.|+..++.+++..+
T Consensus       145 ~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l  199 (235)
T COG0666         145 EDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLL  199 (235)
T ss_pred             CCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999755533

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.42  E-value=8.2e-13  Score=148.69  Aligned_cols=105  Identities=30%  Similarity=0.357  Sum_probs=85.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhh
Q 035705          556 YALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNE  635 (758)
Q Consensus       556 t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~  635 (758)
                      +.|+.|+..|+.++++.|++.|+++|.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+..++.++
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~i  163 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREV  163 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHH
Confidence            35788888888888888888888888888888888888888888888888888888888888888888888888888864


Q ss_pred             HHHHHHHHHHHHHHhC-------CCccccccccCCCcchHH
Q 035705          636 AENVILDELALTLVLD-------GTYVKKHTKCGKGSPHVK  669 (758)
Q Consensus       636 ~~~ll~~~~~~~L~~~-------g~~~~~~d~~g~t~l~~a  669 (758)
                      ++         +|+.+       |++.+..+..|++|+...
T Consensus       164 v~---------~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~  195 (664)
T PTZ00322        164 VQ---------LLSRHSQCHFELGANAKPDSFTGKPPSLED  195 (664)
T ss_pred             HH---------HHHhCCCcccccCCCCCccccCCCCccchh
Confidence            44         45555       888888888888776544

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.40  E-value=5.9e-13  Score=96.78  Aligned_cols=54  Identities=41%  Similarity=0.656  Sum_probs=30.2

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHH
Q 035705          554 GFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLI  607 (758)
Q Consensus       554 g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll  607 (758)
                      |+||||+|++.|+.+++++|+++|+|+|.+|.+|+||||+|+..|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            456666666666666666666666666666666666666666666666666654

...

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.38  E-value=9.8e-13  Score=95.59  Aligned_cols=53  Identities=34%  Similarity=0.491  Sum_probs=44.5

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHH
Q 035705          587 GYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENV  639 (758)
Q Consensus       587 g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~l  639 (758)
                      |+||||+|++.|+.+++++|+++|+|++.+|.+|+||||+|+..|+.+++++|
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~L   53 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFL   53 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHH
Confidence            78999999999999999999999999999999999999999999999877655

...

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.32  E-value=4.3e-12  Score=127.20  Aligned_cols=114  Identities=30%  Similarity=0.437  Sum_probs=96.1

Q ss_pred             HHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHH
Q 035705          525 TLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQ  604 (758)
Q Consensus       525 ~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~  604 (758)
                      .-|+..|.+++|+..+.+ -.+....+..|.|+||.|+-.|+.+||++|++.|++||..|.+||||||+|+.+++..+++
T Consensus       555 LDaaLeGEldlVq~~i~e-v~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ck  633 (752)
T KOG0515|consen  555 LDAALEGELDLVQRIIYE-VTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCK  633 (752)
T ss_pred             HhhhhcchHHHHHHHHHh-hcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHH
Confidence            347778999999877654 3466677889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCCCCCC-CCCCcHHHHHH--HCCChhhHHHH
Q 035705          605 LLISSGAKCDIEN-ARNETALALAR--ENGNGNEAENV  639 (758)
Q Consensus       605 ~Ll~~gad~~~~d-~~g~t~L~~A~--~~~~~~~~~~l  639 (758)
                      .|++.|+-+.+.. .++.||..-+-  +.|+..+..+|
T Consensus       634 qLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL  671 (752)
T KOG0515|consen  634 QLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYL  671 (752)
T ss_pred             HHHhccceEEeeecccccchhhhcchhhhhHHHHHHHH
Confidence            9999999987654 67888887653  34666655544

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.32  E-value=1.8e-12  Score=94.52  Aligned_cols=55  Identities=33%  Similarity=0.388  Sum_probs=32.5

Q ss_pred             HHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHH
Q 035705          540 ILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLA  594 (758)
Q Consensus       540 l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A  594 (758)
                      |.....+++..|..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|
T Consensus         2 L~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    2 LEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             ----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            3444578888889999999999999999999999999999999999999999987

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.29  E-value=1.6e-11  Score=138.32  Aligned_cols=106  Identities=17%  Similarity=0.263  Sum_probs=98.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 035705          315 TLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYK  394 (758)
Q Consensus       315 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g  394 (758)
                      +.|+.|+..|+.+.++.|++.|++++.    .|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~----~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g  159 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNC----RDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENG  159 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCC----cCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC
Confidence            568999999999999999999999876    7889999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHC-------CCCCCCcccCCCCHHHHHH
Q 035705          395 HEECLKFLASE-------GADLGLINYAGQCANSIAK  424 (758)
Q Consensus       395 ~~~iv~~Ll~~-------g~~~~~~~~~g~t~l~~a~  424 (758)
                      +.+++++|+++       |++++..+..|.+|+....
T Consensus       160 ~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        160 FREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             cHHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            99999999999       8888888888887766553

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.27  E-value=3.4e-11  Score=111.92  Aligned_cols=122  Identities=25%  Similarity=0.327  Sum_probs=106.2

Q ss_pred             CCchhHHHHhcCCHHHHHHHHHcCCCCccccccCccccccccchhhhhhccccccccccchhhhhhhchHHHHHHHhhcc
Q 035705          226 DCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHI  305 (758)
Q Consensus       226 ~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  305 (758)
                      ...||.-++..+..+-...|++.--.++..                                                  
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~--------------------------------------------------   41 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQVNQR--------------------------------------------------   41 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhhhhcc--------------------------------------------------
Confidence            567888999999888888888774334443                                                  


Q ss_pred             CCCCCCCCchHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCc
Q 035705          306 SPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGET  385 (758)
Q Consensus       306 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t  385 (758)
                          +..|.|+|..|+..|+.++|+.|++.|+|+|..   .+..++||||+|+-.|+.++.+.|++.|+.....+.-|+|
T Consensus        42 ----D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~---qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrT  114 (396)
T KOG1710|consen   42 ----DPSGMSVLAHAAYKGNLTLVELLLELGADVNDK---QHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRT  114 (396)
T ss_pred             ----CCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcc---cccccccHHHHHHHcCCchHHHHHHhccCccccccchhhh
Confidence                567889999999999999999999999999875   6788999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHH
Q 035705          386 AAMICARYKHEECLKFLAS  404 (758)
Q Consensus       386 ~L~~A~~~g~~~iv~~Ll~  404 (758)
                      +-.+|+.-|+-++|..+-.
T Consensus       115 AaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen  115 AAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             HHHHHHHhcchHHHHHHhc
Confidence            9999999999998887643

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.25  E-value=2.3e-11  Score=122.01  Aligned_cols=117  Identities=21%  Similarity=0.199  Sum_probs=82.5

Q ss_pred             HHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHH
Q 035705          457 LMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVL  536 (758)
Q Consensus       457 L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v  536 (758)
                      |.-|+..|.+|+|+.++.. -.|+...+..|.|+||-|+..|+++||++|++.|+++|..|.+||||||+|+..++..++
T Consensus       554 LLDaaLeGEldlVq~~i~e-v~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~c  632 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYE-VTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMC  632 (752)
T ss_pred             HHhhhhcchHHHHHHHHHh-hcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHH
Confidence            4457777888888888876 367777888888888888888888888888888888888888777777777777666666


Q ss_pred             HHHHHhhccccCCCCCCCchHHHHHH--HcCCHHHHHHHH
Q 035705          537 EQVILEYALEEGQKGSAGFYALHRAA--KRGDFDLVHTLV  574 (758)
Q Consensus       537 ~~ll~~~~~~~~~~~~~g~t~L~~A~--~~g~~~~v~~Ll  574 (758)
                      +.|++...+..-..-.++.|+...+-  +.|..++.+||.
T Consensus       633 kqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~  672 (752)
T KOG0515|consen  633 KQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLY  672 (752)
T ss_pred             HHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHH
Confidence            66666555555555555555554432  235555555554

>PF13606 Ank_3: Ankyrin repeat

Probab=98.89  E-value=1.9e-09  Score=66.36  Aligned_cols=30  Identities=47%  Similarity=0.633  Sum_probs=28.2

Q ss_pred             CCchHHHHHHHcCcHHHHHHHHhCCCCCCc
Q 035705           88 TEVTALFLAAHAGNLTLVRKLLSLGANVNQ  117 (758)
Q Consensus        88 ~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~  117 (758)
                      +|+||||+||+.|+.++|++|+++|+|+|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            589999999999999999999999999973

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.84  E-value=1.9e-08  Score=100.77  Aligned_cols=85  Identities=28%  Similarity=0.378  Sum_probs=80.2

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCCC-CCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhh
Q 035705          557 ALHRAAKRGDFDLVHTLVSRCYDVNASD-ADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNE  635 (758)
Q Consensus       557 ~L~~A~~~g~~~~v~~Ll~~ga~~n~~d-~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~  635 (758)
                      -||..++.|+.+..-.||..||++|..+ ..|.||||.|++.|+..-+++|+-+|||++..|.+|+||+.||-..|+.++
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~l  215 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHEL  215 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHH
Confidence            3899999999999999999999999987 479999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 035705          636 AENVIL  641 (758)
Q Consensus       636 ~~~ll~  641 (758)
                      .+.|+.
T Consensus       216 aeRl~e  221 (669)
T KOG0818|consen  216 AERLVE  221 (669)
T ss_pred             HHHHHH
Confidence            988873

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.82  E-value=2.1e-09  Score=113.89  Aligned_cols=87  Identities=25%  Similarity=0.247  Sum_probs=80.7

Q ss_pred             cccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCC-CCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcH
Q 035705          545 LEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDA-DGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETA  623 (758)
Q Consensus       545 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~-~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~  623 (758)
                      ...+..|..|+|+||+|+..+..+++++||++|+|++.+|. .|+||||.|+..|+.+++-+||++|+.+.++|++|.+|
T Consensus        43 n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsp  122 (1267)
T KOG0783|consen   43 NLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSP  122 (1267)
T ss_pred             hhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCH
Confidence            34577788999999999999999999999999999999995 79999999999999999999999999999999999999


Q ss_pred             HHHHHHCC
Q 035705          624 LALARENG  631 (758)
Q Consensus       624 L~~A~~~~  631 (758)
                      |.+.++-.
T Consensus       123 lq~~~r~~  130 (1267)
T KOG0783|consen  123 LQFLSRVL  130 (1267)
T ss_pred             HHHHhhcc
Confidence            99988743

>PF13606 Ank_3: Ankyrin repeat

Probab=98.81  E-value=5.5e-09  Score=64.33  Aligned_cols=29  Identities=38%  Similarity=0.651  Sum_probs=21.9

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhCCCCCC
Q 035705          586 DGYTPLMLAAKSGHGSVCQLLISSGAKCD  614 (758)
Q Consensus       586 ~g~tpL~~A~~~~~~~iv~~Ll~~gad~~  614 (758)
                      +|+||||+|++.|+.+++++|+++|+|+|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            47777777777777777777777777776

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.75  E-value=1.2e-08  Score=65.05  Aligned_cols=33  Identities=39%  Similarity=0.684  Sum_probs=25.2

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCC
Q 035705          586 DGYTPLMLAAKSGHGSVCQLLISSGAKCDIENA  618 (758)
Q Consensus       586 ~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~  618 (758)
                      +|+||||+|+..|+.+++++|+++|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            477788888888888888888888888777663

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.72  E-value=1.7e-08  Score=64.34  Aligned_cols=32  Identities=34%  Similarity=0.461  Sum_probs=30.3

Q ss_pred             CCchHHHHHHHcCcHHHHHHHHhCCCCCCccc
Q 035705           88 TEVTALFLAAHAGNLTLVRKLLSLGANVNQKL  119 (758)
Q Consensus        88 ~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~  119 (758)
                      +|+||||+|+..|+.++|++|+++|++++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            58999999999999999999999999999875

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.63  E-value=1.3e-07  Score=94.88  Aligned_cols=88  Identities=19%  Similarity=0.222  Sum_probs=82.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 035705          315 TLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYK  394 (758)
Q Consensus       315 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g  394 (758)
                      --||..++.|+.+..-.||..|+++|+.   -...|.||||.|++.|+.--+++|+-+|+|++..|.+|+||+.+|-..|
T Consensus       135 rQLhasvRt~nlet~LRll~lGA~~N~~---hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~g  211 (669)
T KOG0818|consen  135 KQLHSSVRTGNLETCLRLLSLGAQANFF---HPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGG  211 (669)
T ss_pred             HHHHHHhhcccHHHHHHHHHcccccCCC---CcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcC
Confidence            3589999999999999999999999985   4578999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHC
Q 035705          395 HEECLKFLASE  405 (758)
Q Consensus       395 ~~~iv~~Ll~~  405 (758)
                      |-++.+.|++.
T Consensus       212 H~~laeRl~e~  222 (669)
T KOG0818|consen  212 HHELAERLVEI  222 (669)
T ss_pred             chHHHHHHHHH
Confidence            99999888874

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.63  E-value=3.3e-08  Score=98.67  Aligned_cols=89  Identities=22%  Similarity=0.272  Sum_probs=81.7

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHh-CCCCCCCCCCCCCcHHHHHHH
Q 035705          551 GSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLIS-SGAKCDIENARNETALALARE  629 (758)
Q Consensus       551 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~-~gad~~~~d~~g~t~L~~A~~  629 (758)
                      ..++..++++|++.|++..++.+.-.|.|++.+|.+.+|+||.|+..|+.+++++|++ .+.|++.+|+.|+|||.-|..
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~  582 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKH  582 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHh
Confidence            3456678999999999999999999999999999999999999999999999999999 489999999999999999999


Q ss_pred             CCChhhHHHH
Q 035705          630 NGNGNEAENV  639 (758)
Q Consensus       630 ~~~~~~~~~l  639 (758)
                      .++.+++++|
T Consensus       583 F~h~~v~k~L  592 (622)
T KOG0506|consen  583 FKHKEVVKLL  592 (622)
T ss_pred             cCcHHHHHHH
Confidence            9999866544

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.60  E-value=2.3e-08  Score=106.29  Aligned_cols=82  Identities=20%  Similarity=0.295  Sum_probs=62.1

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHH
Q 035705          344 QTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTA-AGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSI  422 (758)
Q Consensus       344 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~  422 (758)
                      +.+|..|+|+||+|+..+..++++|||++|++++.+|. .|.||||-|+..|+++++-+|+++|+.+.+.|++|.+||..
T Consensus        46 nikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq~  125 (1267)
T KOG0783|consen   46 NIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQF  125 (1267)
T ss_pred             hHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHHH
Confidence            34667777777777777777777777777777777774 47777777777777777777777777777777777777777


Q ss_pred             HHh
Q 035705          423 AKS  425 (758)
Q Consensus       423 a~~  425 (758)
                      .+.
T Consensus       126 ~~r  128 (1267)
T KOG0783|consen  126 LSR  128 (1267)
T ss_pred             Hhh
Confidence            665

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.54  E-value=2.2e-07  Score=100.55  Aligned_cols=139  Identities=17%  Similarity=0.083  Sum_probs=107.0

Q ss_pred             ccccchhHHHHHHHHHcCCHHHHHhhhcCCCC---CcccccceeeccccceeeecccccchhhhhhhcccCCchHHHHHH
Q 035705           21 VDYEAEVSQRLVDAAHVNDVKRANECIGDPFV---DVNFVGTVSLRAKKTELVLHDEAAHEVRVVYEEFKTEVTALFLAA   97 (758)
Q Consensus        21 ~~~~~~~~~~L~~A~~~G~~~~v~~LL~~~~~---d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~   97 (758)
                      ..-.+.....++.|++.||...|+..|++...   ++|                            +.|.=|+++|++|+
T Consensus        19 ~~~l~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lnin----------------------------c~d~lGr~al~iai   70 (822)
T KOG3609|consen   19 DADLNEGEKGFLLAHENGDVPLVAKALEYKAVSKLNIN----------------------------CRDPLGRLALHIAI   70 (822)
T ss_pred             ccccchhhHHHHHHHHcCChHHHHHHHHhccccccchh----------------------------ccChHhhhceeccc
Confidence            33344566778999999999999999998642   233                            33788999999999


Q ss_pred             HcCcHHHHHHHHhCCCCCCcccccCcchhHHhhhChHHHHHHHHhcCCCccccchHHHHHHHcCChhHHHHHHhccCCCC
Q 035705           98 HAGNLTLVRKLLSLGANVNQKLFRGYATTAAVREDHLEILDLLIKAGACQEACEEALLETSYLGQARPAELLMATDLIRP  177 (758)
Q Consensus        98 ~~g~~~iv~~Ll~~ga~~~~~~~~g~~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~l~~A~~~g~~~iv~~Ll~~~~~~~  177 (758)
                      .+-+.+++++|++++..+      |.++.+|+..|..+.|+.++.+-........                ..+.....-
T Consensus        71 ~nenle~~eLLl~~~~~~------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~----------------~~d~~~~~f  128 (822)
T KOG3609|consen   71 DNENLELQELLLDTSSEE------GDALLLAIAVGSVPLVELLLVHFVDAPYLER----------------SGDANSPHF  128 (822)
T ss_pred             ccccHHHHHHHhcCcccc------chHHHHHHHHHHHHHHHHHHhcccccchhcc----------------ccccCcccC
Confidence            999999999999987655      6689999999999999999998654322110                111111222


Q ss_pred             CCCchHHHHHHhcCCHHHHHHHHhCCCCCCcc
Q 035705          178 QVSVHALVSACFRGFVNVVDTLIKCGVDANAI  209 (758)
Q Consensus       178 ~~~~t~L~~A~~~g~~~iv~~Ll~~g~d~~~~  209 (758)
                      ..+.|||.+||..+++|++++||++|+++...
T Consensus       129 t~ditPliLAAh~NnyEil~~Ll~kg~~i~~P  160 (822)
T KOG3609|consen  129 TPDITPLMLAAHLNNFEILQCLLTRGHCIPIP  160 (822)
T ss_pred             CCCccHHHHHHHhcchHHHHHHHHcCCCCCCC
Confidence            34689999999999999999999999887644

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.53  E-value=2.5e-07  Score=94.73  Aligned_cols=96  Identities=24%  Similarity=0.306  Sum_probs=86.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 035705          315 TLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYK  394 (758)
Q Consensus       315 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g  394 (758)
                      .-|..|+...++..+-+||.+|......-...+.+|+|+||+||+.|+..+.++|+-+|+|+..+|..|+|+|.||-+.|
T Consensus       626 qqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~  705 (749)
T KOG0705|consen  626 QQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAG  705 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcc
Confidence            35677888899999999999998877666667788899999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCCC
Q 035705          395 HEECLKFLASEGADLG  410 (758)
Q Consensus       395 ~~~iv~~Ll~~g~~~~  410 (758)
                      ..+++..|+++|+..+
T Consensus       706 sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  706 SQECIDVLLQYGCPDE  721 (749)
T ss_pred             cHHHHHHHHHcCCCcc
Confidence            9999999999998643

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.48  E-value=1.6e-07  Score=93.97  Aligned_cols=92  Identities=21%  Similarity=0.233  Sum_probs=61.2

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHc
Q 035705          485 ADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKR  564 (758)
Q Consensus       485 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~  564 (758)
                      .++..++++|++.|....++.+.-.|.|++..|.+.+|+||.|+..|+.+++++|+.....+++..|..|+|||.-|...
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F  583 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHF  583 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhc
Confidence            34556677777777777777777777777777777777766666666666666666666666666666666666666666


Q ss_pred             CCHHHHHHHHhc
Q 035705          565 GDFDLVHTLVSR  576 (758)
Q Consensus       565 g~~~~v~~Ll~~  576 (758)
                      ++.+++++|-+.
T Consensus       584 ~h~~v~k~L~~~  595 (622)
T KOG0506|consen  584 KHKEVVKLLEEA  595 (622)
T ss_pred             CcHHHHHHHHHH
Confidence            666666655543

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.46  E-value=5.2e-07  Score=91.98  Aligned_cols=95  Identities=26%  Similarity=0.330  Sum_probs=85.3

Q ss_pred             cccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCC--CCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCc
Q 035705          545 LEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYD--VNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNET  622 (758)
Q Consensus       545 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~--~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t  622 (758)
                      -+.-..+.+..|.||+|++.|+-++|+|+|++|..  ++..|..|.|+||.|+..++..++++|++.||.+...|..|+|
T Consensus       890 g~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~t  969 (1004)
T KOG0782|consen  890 GSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKT  969 (1004)
T ss_pred             CceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCC
Confidence            34445677888999999999999999999999943  5778899999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCChhhHHHH
Q 035705          623 ALALARENGNGNEAENV  639 (758)
Q Consensus       623 ~L~~A~~~~~~~~~~~l  639 (758)
                      |-.-|-+.|..+++.+|
T Consensus       970 p~eraqqa~d~dlaayl  986 (1004)
T KOG0782|consen  970 PQERAQQAGDPDLAAYL  986 (1004)
T ss_pred             hHHHHHhcCCchHHHHH
Confidence            99999999999866654

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.42  E-value=5.4e-07  Score=92.04  Aligned_cols=84  Identities=30%  Similarity=0.396  Sum_probs=59.7

Q ss_pred             HHHHHHHcCCHHHHHHHH--hcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChh
Q 035705          557 ALHRAAKRGDFDLVHTLV--SRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGN  634 (758)
Q Consensus       557 ~L~~A~~~g~~~~v~~Ll--~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~  634 (758)
                      |+|+++.....+-+..++  +.+..++..|..|+||||+|+.-|+.+.++.|+.+|||+..+|+.|++|||.|+..|+..
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q  102 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQ  102 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHH
Confidence            467776666555544433  234566777777788888888888888888888888888888888888888888888777


Q ss_pred             hHHHHH
Q 035705          635 EAENVI  640 (758)
Q Consensus       635 ~~~~ll  640 (758)
                      ++..++
T Consensus       103 ~i~~vl  108 (560)
T KOG0522|consen  103 IITEVL  108 (560)
T ss_pred             HHHHHH
Confidence            666554

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.39  E-value=7.5e-07  Score=91.35  Aligned_cols=91  Identities=32%  Similarity=0.360  Sum_probs=78.4

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCC--CCCC--CCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCC
Q 035705          557 ALHRAAKRGDFDLVHTLVSRCY--DVNA--SDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGN  632 (758)
Q Consensus       557 ~L~~A~~~g~~~~v~~Ll~~ga--~~n~--~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~  632 (758)
                      -|..|+...++..+-+||.+|.  .+|.  .+.+|+|+||+|++.|+..+.++|+=+|+|+-++|..|+|||.||-+.|.
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhccc
Confidence            3667888888999999999983  3443  45678999999999999999999999999999999999999999999998


Q ss_pred             hhhHHHHHHHHHHHHHHhCCCccc
Q 035705          633 GNEAENVILDELALTLVLDGTYVK  656 (758)
Q Consensus       633 ~~~~~~ll~~~~~~~L~~~g~~~~  656 (758)
                      .+         ++..|+++|+...
T Consensus       707 qe---------c~d~llq~gcp~e  721 (749)
T KOG0705|consen  707 QE---------CIDVLLQYGCPDE  721 (749)
T ss_pred             HH---------HHHHHHHcCCCcc
Confidence            86         6668899997643

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.38  E-value=1.1e-06  Score=89.55  Aligned_cols=119  Identities=20%  Similarity=0.223  Sum_probs=103.6

Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccc-cCCCCCCCchHHHHHHHcCCHHH
Q 035705          491 AMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALE-EGQKGSAGFYALHRAAKRGDFDL  569 (758)
Q Consensus       491 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~-~~~~~~~g~t~L~~A~~~g~~~~  569 (758)
                      +..|+..+.+--++.+..+|-++-.++.+..+.||+|+..|+.++|+++|.+.+.. .+..|..|.|+||.|+-.++..+
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~v  949 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAV  949 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHH
Confidence            34555566555555666778888889999999999999999999999999887654 57778999999999999999999


Q ss_pred             HHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhC
Q 035705          570 VHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISS  609 (758)
Q Consensus       570 v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~  609 (758)
                      ..+|++.|+.+-.+|..|.||-..|-+.|..++.-+|-+.
T Consensus       950 c~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  950 CQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            9999999999999999999999999999999999998764

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.30  E-value=1.5e-06  Score=88.82  Aligned_cols=88  Identities=22%  Similarity=0.381  Sum_probs=73.6

Q ss_pred             cHHHHHHHcCChhHHHH-HHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcH
Q 035705          522 TAITLAELNRNGEVLEQ-VILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHG  600 (758)
Q Consensus       522 t~L~~A~~~~~~~~v~~-ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~  600 (758)
                      -|+|+++.....+-+.. +..+....++..|..|.||||.|+..|+.+.++.|+.+|+++..++..|++|||.|+..|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence            34777777666555444 33445667788899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhC
Q 035705          601 SVCQLLISS  609 (758)
Q Consensus       601 ~iv~~Ll~~  609 (758)
                      +++..++.+
T Consensus       102 q~i~~vlr~  110 (560)
T KOG0522|consen  102 QIITEVLRH  110 (560)
T ss_pred             HHHHHHHHH
Confidence            888887764

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.21  E-value=1.1e-05  Score=87.71  Aligned_cols=131  Identities=23%  Similarity=0.256  Sum_probs=79.6

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhcC---CCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcC
Q 035705          455 SPLMFVTQANDVDALKKLIEWAD---VDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNR  531 (758)
Q Consensus       455 t~L~~a~~~~~~~~v~~Ll~~~~---~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  531 (758)
                      --...|+.+|+...|+..++...   .++|..|.-|+++|+.|+.+.+.+++++|++++...       ..+|-+|+..|
T Consensus        27 ~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~~   99 (822)
T KOG3609|consen   27 KGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAVG   99 (822)
T ss_pred             HHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHHH
Confidence            34566777777777777777632   356677777777777777777777777777765443       33566666666


Q ss_pred             ChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCC
Q 035705          532 NGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGA  611 (758)
Q Consensus       532 ~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga  611 (758)
                      ..+.|+.++........         ++.               .+..-...-..+.|||.+||..++.||+++||++|+
T Consensus       100 ~v~~VE~ll~~~~~~~~---------~~~---------------~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~  155 (822)
T KOG3609|consen  100 SVPLVELLLVHFVDAPY---------LER---------------SGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGH  155 (822)
T ss_pred             HHHHHHHHHhcccccch---------hcc---------------ccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCC
Confidence            66666655433221100         000               111111223456778888888888888888888777


Q ss_pred             CCCCC
Q 035705          612 KCDIE  616 (758)
Q Consensus       612 d~~~~  616 (758)
                      ++-..
T Consensus       156 ~i~~P  160 (822)
T KOG3609|consen  156 CIPIP  160 (822)
T ss_pred             CCCCC
Confidence            76544

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.20  E-value=1.9e-06  Score=96.76  Aligned_cols=108  Identities=30%  Similarity=0.319  Sum_probs=90.0

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCC
Q 035705          552 SAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENG  631 (758)
Q Consensus       552 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~  631 (758)
                      ..|.|+||.|+..+..-++++|++.|+++|..|..|+||||.+...|+...+..|+++||++++.+.+|++||++|....
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~  733 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAA  733 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999998886


Q ss_pred             ChhhHHHHHHHHHHHHHHhCCCccccccccCCC
Q 035705          632 NGNEAENVILDELALTLVLDGTYVKKHTKCGKG  664 (758)
Q Consensus       632 ~~~~~~~ll~~~~~~~L~~~g~~~~~~d~~g~t  664 (758)
                      +.+.+-.+...     ....++..+..+..+++
T Consensus       734 ~~d~~~l~~l~-----~~~~~~~~~~~~~~~~~  761 (785)
T KOG0521|consen  734 NADIVLLLRLA-----AEAAPAFGNPGDETVKA  761 (785)
T ss_pred             cccHHHHHhhh-----HhhccCcCCcccchhcc
Confidence            66654433211     13445555555544444

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.18  E-value=4.3e-06  Score=73.77  Aligned_cols=67  Identities=24%  Similarity=0.275  Sum_probs=42.5

Q ss_pred             ccCCCCCCCchHHHHHHHcCCHHHHHHHHhcC-CCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCC
Q 035705          546 EEGQKGSAGFYALHRAAKRGDFDLVHTLVSRC-YDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAK  612 (758)
Q Consensus       546 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad  612 (758)
                      ++|..|..||||++.|+..|+.+.+.+|+.+| +.|..+|..|.+++.+|-+.|..++++.|-+.-.+
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            45566666666666666666666666666666 66666666666666666666666666666665333

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.12  E-value=1.3e-05  Score=78.30  Aligned_cols=74  Identities=34%  Similarity=0.451  Sum_probs=62.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHC
Q 035705          556 YALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALAREN  630 (758)
Q Consensus       556 t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~  630 (758)
                      --|..||+.|+.+.|++|++.|.++|.+|....+||.+|+..||.++|++|+++||-+..-.-+|.-++ |++-+
T Consensus        38 ~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~-YgaLn  111 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCH-YGALN  111 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhh-hhhhh
Confidence            348899999999999999999999999999999999999999999999999999998765555665544 44433

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.00  E-value=1.5e-05  Score=70.38  Aligned_cols=70  Identities=21%  Similarity=0.255  Sum_probs=47.9

Q ss_pred             CCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCC
Q 035705          510 GANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYD  579 (758)
Q Consensus       510 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~  579 (758)
                      +.++|.+|..|+||+++|+..|+.+.+.+|+......+...|..|.+++.+|-+.|..++++.|.+.-.+
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            3466667777777777777777777777666666667777777777777777777777777777665333

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.98  E-value=1.7e-05  Score=77.56  Aligned_cols=67  Identities=18%  Similarity=0.290  Sum_probs=38.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcH
Q 035705          316 LIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETA  386 (758)
Q Consensus       316 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~  386 (758)
                      -|..||+.|..+.|++|++.|.++|.    .|....+||.+|+-.||.++||+|+++|+--+.-...|..+
T Consensus        39 elceacR~GD~d~v~~LVetgvnVN~----vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC  105 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNVNA----VDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRC  105 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCcch----hhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchh
Confidence            45566666666666666665555554    45555566666666666666666666665444333444443

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.86  E-value=1.2e-05  Score=90.43  Aligned_cols=89  Identities=20%  Similarity=0.235  Sum_probs=78.1

Q ss_pred             hcCCCCCCC--CCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCC
Q 035705          575 SRCYDVNAS--DADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDG  652 (758)
Q Consensus       575 ~~ga~~n~~--d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g  652 (758)
                      .+++++|..  -..|.|+||.|+..+..-++++|+++|+++|.+|..|+||||.+...|+..         .+..|+++|
T Consensus       642 ~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~---------~~~~ll~~~  712 (785)
T KOG0521|consen  642 AHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTS---------IACLLLKRG  712 (785)
T ss_pred             cchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccc---------hhhhhcccc
Confidence            344455542  346899999999999999999999999999999999999999999999997         566788899


Q ss_pred             CccccccccCCCcchHHHHH
Q 035705          653 TYVKKHTKCGKGSPHVKLLK  672 (758)
Q Consensus       653 ~~~~~~d~~g~t~l~~a~~~  672 (758)
                      ++.+..+.+|++|+++|...
T Consensus       713 a~~~a~~~~~~~~l~~a~~~  732 (785)
T KOG0521|consen  713 ADPNAFDPDGKLPLDIAMEA  732 (785)
T ss_pred             ccccccCccCcchhhHHhhh
Confidence            99999999999999998664

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.81  E-value=5.3e-05  Score=84.57  Aligned_cols=126  Identities=23%  Similarity=0.193  Sum_probs=90.1

Q ss_pred             CcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHH-hcCCCCCCCCCCCCcHHH
Q 035705          514 KLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLV-SRCYDVNASDADGYTPLM  592 (758)
Q Consensus       514 ~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~ga~~n~~d~~g~tpL~  592 (758)
                      ......|+|.+|+++..++...++.++...+......|.+|.-.+|+++ .+..++.-+|+ -.|..++.+|..||||||
T Consensus       568 ~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca-~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~  646 (975)
T KOG0520|consen  568 SSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCA-ALGYEWAFLPISADGVAIDIRDRNGWTPLH  646 (975)
T ss_pred             ccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhh-hcCCceeEEEEeecccccccccCCCCcccc
Confidence            3445567888888888888888887777545555555666666677744 44455554444 456788888888888888


Q ss_pred             HHHHcCcHHHHHHHHhCCCCCC------CCCCCCCcHHHHHHHCCChhhHHHHH
Q 035705          593 LAAKSGHGSVCQLLISSGAKCD------IENARNETALALARENGNGNEAENVI  640 (758)
Q Consensus       593 ~A~~~~~~~iv~~Ll~~gad~~------~~d~~g~t~L~~A~~~~~~~~~~~ll  640 (758)
                      +|+.+|+..++..|++.|++..      ..+..|.|+-.+|..+|+..+..+|-
T Consensus       647 wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~ls  700 (975)
T KOG0520|consen  647 WAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLS  700 (975)
T ss_pred             hHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHh
Confidence            8888888888888888776644      33456888888888888877666554

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.69  E-value=4.1e-05  Score=85.43  Aligned_cols=130  Identities=18%  Similarity=0.105  Sum_probs=106.1

Q ss_pred             CCcccCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchH
Q 035705          479 DLDEQDADGFSAAMIAAAAGHVEAFRLLLHA-GANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYA  557 (758)
Q Consensus       479 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~  557 (758)
                      ........|++.+|.++..++..+++.+++- |......|..|.-.+|+ |..+..+....++.-.+..++.+|..|+||
T Consensus       566 ~~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tp  644 (975)
T KOG0520|consen  566 LSSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTP  644 (975)
T ss_pred             ccccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcc
Confidence            3445567789999999999999999999986 76667778888888888 556666766667778888999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCC------CCCCCCCcHHHHHHHcCcHHHHHHHHhC
Q 035705          558 LHRAAKRGDFDLVHTLVSRCYDVN------ASDADGYTPLMLAAKSGHGSVCQLLISS  609 (758)
Q Consensus       558 L~~A~~~g~~~~v~~Ll~~ga~~n------~~d~~g~tpL~~A~~~~~~~iv~~Ll~~  609 (758)
                      ||+|+.+|+..++..|++.|++.+      ..+..|.|+-..|...|+..+.-+|-++
T Consensus       645 L~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  645 LHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             cchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            999999999999999998876544      3445789999999999988777777654

>smart00248 ANK ankyrin repeats

Probab=96.86  E-value=0.0017  Score=39.32  Aligned_cols=29  Identities=48%  Similarity=0.660  Sum_probs=25.7

Q ss_pred             CCchHHHHHHHcCcHHHHHHHHhCCCCCC
Q 035705           88 TEVTALFLAAHAGNLTLVRKLLSLGANVN  116 (758)
Q Consensus        88 ~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~  116 (758)
                      +|.||||+|+..|+.+++++|++.|.+++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            36799999999999999999999988764

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.82  E-value=0.0073  Score=55.46  Aligned_cols=120  Identities=19%  Similarity=0.206  Sum_probs=84.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhH
Q 035705          456 PLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEV  535 (758)
Q Consensus       456 ~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~  535 (758)
                      .|--|+...+.+-+.-++...        .+-.+++.+++.++..+++.+|+.+-         ..|.-..|.......-
T Consensus       156 sledAV~AsN~~~i~~~VtdK--------kdA~~Am~~si~~~K~dva~~lls~f---------~ft~~dv~~~~~~~yd  218 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDK--------KDAHQAMWLSIGNAKEDVALYLLSKF---------NFTKQDVASMEKELYD  218 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcch--------HHHHHHHHHHhcccHHHHHHHHHhhc---------ceecchhhhcCcchhh
Confidence            456677777777777666542        23457888888888888888888641         1122222222233344


Q ss_pred             HHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcC-CCCCCC---CCCCCcHHHHHHHcCcHHHHHHHHhCCC
Q 035705          536 LEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRC-YDVNAS---DADGYTPLMLAAKSGHGSVCQLLISSGA  611 (758)
Q Consensus       536 v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~n~~---d~~g~tpL~~A~~~~~~~iv~~Ll~~ga  611 (758)
                      ++++|.+.+                    .+..+++++|++| +++|..   -+.|.|-|.-|+.+++.+++.+||++||
T Consensus       219 ieY~LS~h~--------------------a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  219 IEYLLSEHS--------------------ASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             HHHHHhhcC--------------------CcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence            555654433                    3578999999999 888864   5689999999999999999999999998


Q ss_pred             C
Q 035705          612 K  612 (758)
Q Consensus       612 d  612 (758)
                      -
T Consensus       279 ~  279 (284)
T PF06128_consen  279 I  279 (284)
T ss_pred             c
Confidence            4

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.78  E-value=0.0015  Score=66.82  Aligned_cols=63  Identities=19%  Similarity=0.195  Sum_probs=54.5

Q ss_pred             CHHHHHHHHhcCCCCCC------CCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q 035705          566 DFDLVHTLVSRCYDVNA------SDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALAR  628 (758)
Q Consensus       566 ~~~~v~~Ll~~ga~~n~------~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~  628 (758)
                      -.+.+++|.+++++.|.      .+..--|+||+|+..|...+|.+||+.|+|+..+|..|+||..++.
T Consensus       403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             chhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            47788899998877654      3445679999999999999999999999999999999999999887

>PLN03218 maturation of RBCL 1; Provisional

Probab=96.72  E-value=0.44  Score=57.09  Aligned_cols=166  Identities=16%  Similarity=0.114  Sum_probs=85.3

Q ss_pred             HHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcC---CHHHHHHHHhcC
Q 035705          501 EAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRG---DFDLVHTLVSRC  577 (758)
Q Consensus       501 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g---~~~~v~~Ll~~g  577 (758)
                      .+++.+++.|..|+....  .+.|...+..+..+....++...+......+..-.+.|..+...-   -..+++...+.|
T Consensus       833 ~lf~eM~~~Gi~Pd~~T~--~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~~~~A~~l~~em~~~G  910 (1060)
T PLN03218        833 MVYRETISAGTLPTMEVL--SQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEYDPRAFSLLEEAASLG  910 (1060)
T ss_pred             HHHHHHHHCCCCCCHHHH--HHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccChHHHHHHHHHHHHcC
Confidence            455566677776654332  122322234555667777777777666666656666666654221   234556666788


Q ss_pred             CCCCCCCCCCCcHHH------HHHHcC---cHHHHHHHHhCCCCCCCCCC------------CCCcHHHHHHHCCChhhH
Q 035705          578 YDVNASDADGYTPLM------LAAKSG---HGSVCQLLISSGAKCDIENA------------RNETALALARENGNGNEA  636 (758)
Q Consensus       578 a~~n~~d~~g~tpL~------~A~~~~---~~~iv~~Ll~~gad~~~~d~------------~g~t~L~~A~~~~~~~~~  636 (758)
                      .-++..-+.-...++      .|+...   -...++.-++.|+++-..-.            .|...+-+|.+-+.    
T Consensus       911 i~p~~~~~~~~~~~d~~~~~~~aa~~~l~~wl~~~~~~~~~g~~lp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----  986 (1060)
T PLN03218        911 VVPSVSFKKSPIVIDAEELPVFAAEVYLLTILKGLKHRLAAGAKLPNVTILLPTEKKEIYTPKGEKTINLAGRVGQ----  986 (1060)
T ss_pred             CCCCcccccCceEEEcccCcchhHHHHHHHHHHHHHHHHhccCcCCcceeeeccccceeeccCCchhHHHHHHHHH----
Confidence            776654211111111      122211   12344445667776432211            34434444443332    


Q ss_pred             HHHHHHHHHHHHHhCCCccccccccCCCcchHHHHHHhcccC
Q 035705          637 ENVILDELALTLVLDGTYVKKHTKCGKGSPHVKLLKMWGKSR  678 (758)
Q Consensus       637 ~~ll~~~~~~~L~~~g~~~~~~d~~g~t~l~~a~~~~~~~~~  678 (758)
                            .+.-+|.+-+++.......|+--+.--.++.|-+..
T Consensus       987 ------~~~~~l~~l~~~~~~~~~~g~~~~~~~~~~~wl~~~ 1022 (1060)
T PLN03218        987 ------AVAALLRRLGLPYQGSESHGKLRINGLSLRRWFQPK 1022 (1060)
T ss_pred             ------HHHHHHHHhCCCCCCCCCCCeEEeccHHHHHHhccc
Confidence                  234455556777777766688766555555565544

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.70  E-value=0.0019  Score=66.06  Aligned_cols=67  Identities=22%  Similarity=0.381  Sum_probs=50.9

Q ss_pred             CHHHHHHHHHccCCCCCCcccCCC--CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 035705          325 NARAVELLLNCAVDKEFPVQTYSK--TELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICA  391 (758)
Q Consensus       325 ~~~~v~~Ll~~g~~~~~~~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  391 (758)
                      -.+.+++|.+++.+.|+.+.....  .-.|+||+|+..|..++|.+||+.|+|+..+|..|+||..++.
T Consensus       403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             chhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            366788888888877765543332  3457888888888888888888888888888888888888776

>smart00248 ANK ankyrin repeats

Probab=96.70  E-value=0.0028  Score=38.25  Aligned_cols=28  Identities=46%  Similarity=0.702  Sum_probs=19.0

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHhCCCCCC
Q 035705          587 GYTPLMLAAKSGHGSVCQLLISSGAKCD  614 (758)
Q Consensus       587 g~tpL~~A~~~~~~~iv~~Ll~~gad~~  614 (758)
                      |.||+|+|+..++.++++.|+++|.+++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            5667777777777777777777666553

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.33  E-value=0.049  Score=48.90  Aligned_cols=46  Identities=17%  Similarity=0.083  Sum_probs=35.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 035705          316 LIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS  371 (758)
Q Consensus       316 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  371 (758)
                      -|..|+..|-...|...++.|.+++.          ++|..|+..++-.++.+++.
T Consensus       146 hl~~a~~kgll~F~letlkygg~~~~----------~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  146 HLEKAAAKGLLPFVLETLKYGGNVDI----------IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCcccH----------HHHHHHHHhhHHHHHHHhhc
Confidence            56778888888888888887776542          57888888888888887764

These proteins may be involved in promoting survival of infected macrophages [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.22  E-value=0.021  Score=51.15  Aligned_cols=135  Identities=15%  Similarity=0.097  Sum_probs=94.7

Q ss_pred             chHHHHHHHcCcHHHHHHHHhCCCCCCcccccCcch-hHHhhhChHHHHHHHHhcCCCccccchHHHHHHHcCChhHHH-
Q 035705           90 VTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYAT-TAAVREDHLEILDLLIKAGACQEACEEALLETSYLGQARPAE-  167 (758)
Q Consensus        90 ~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~~l-~~A~~~g~~~iv~~Ll~~ga~~~~~~~~l~~A~~~g~~~iv~-  167 (758)
                      +-.|..|+..+.+.|.++.-+...+-   -...+.| ..||++.+.|||+|+= ..-.+....+-+..|....+.+... 
T Consensus        47 ~CLl~HAVk~nmL~ILqkyke~L~~~---~~~~q~LFElAC~~qkydiV~WI~-qnL~i~~~~~iFdIA~~~kDlsLysl  122 (192)
T PF03158_consen   47 WCLLYHAVKYNMLSILQKYKEDLENE---RYLNQELFELACEEQKYDIVKWIG-QNLHIYNPEDIFDIAFAKKDLSLYSL  122 (192)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHhhcc---hhHHHHHHHHHHHHccccHHHHHh-hccCCCCchhhhhhhhhccchhHHHH
Confidence            45677899999999998887753321   1223466 8999999999999993 3233334456677788887776521 


Q ss_pred             ---HHHhccCCCCCC-----CchHHHHHHhcCCHHHHHHHHhCCCCCCcchhhhhhccccccccCCCCchhHHHHhcCCH
Q 035705          168 ---LLMATDLIRPQV-----SVHALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQI  239 (758)
Q Consensus       168 ---~Ll~~~~~~~~~-----~~t~L~~A~~~g~~~iv~~Ll~~g~d~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~  239 (758)
                         ++++........     -..-|..|+..|-...+...+++|-+++                   .++|..|+...+.
T Consensus       123 GY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~-------------------~~vls~Av~ynhR  183 (192)
T PF03158_consen  123 GYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVD-------------------IIVLSQAVKYNHR  183 (192)
T ss_pred             HHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCccc-------------------HHHHHHHHHhhHH
Confidence               122221111011     1235889999999999999999998764                   3679999999999


Q ss_pred             HHHHHHHH
Q 035705          240 SVVRLLLQ  247 (758)
Q Consensus       240 ~iv~~Ll~  247 (758)
                      .++.+++.
T Consensus       184 kIL~yfi~  191 (192)
T PF03158_consen  184 KILDYFIR  191 (192)
T ss_pred             HHHHHhhc
Confidence            99999874

These proteins may be involved in promoting survival of infected macrophages [].

>PLN03218 maturation of RBCL 1; Provisional

Probab=95.89  E-value=1.8  Score=52.10  Aligned_cols=83  Identities=12%  Similarity=-0.051  Sum_probs=42.0

Q ss_pred             HHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHh-CCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHH
Q 035705          568 DLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLIS-SGAKCDIENARNETALALARENGNGNEAENVILDELAL  646 (758)
Q Consensus       568 ~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~-~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~  646 (758)
                      .+.+.+++.|..++....  .+.|-..+..+..+..+.+++ .|..+...+..-.+.|..+...-..+..      .+..
T Consensus       833 ~lf~eM~~~Gi~Pd~~T~--~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~~~~A~------~l~~  904 (1060)
T PLN03218        833 MVYRETISAGTLPTMEVL--SQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEYDPRAF------SLLE  904 (1060)
T ss_pred             HHHHHHHHCCCCCCHHHH--HHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccChHHHH------HHHH
Confidence            445556667766654322  112211122334555555554 5666666665556666665422111222      2445


Q ss_pred             HHHhCCCccccc
Q 035705          647 TLVLDGTYVKKH  658 (758)
Q Consensus       647 ~L~~~g~~~~~~  658 (758)
                      .....|.-++..
T Consensus       905 em~~~Gi~p~~~  916 (1060)
T PLN03218        905 EAASLGVVPSVS  916 (1060)
T ss_pred             HHHHcCCCCCcc
Confidence            566778887775

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=95.88  E-value=5  Score=46.75  Aligned_cols=113  Identities=15%  Similarity=0.150  Sum_probs=58.4

Q ss_pred             hHHHHHHHcCcHHHHHHHHhCCCCCCcccccCcch-hHHhhhChH----HHHHHHHhcCCCccc-cch-HHHHHHHcCCh
Q 035705           91 TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYAT-TAAVREDHL----EILDLLIKAGACQEA-CEE-ALLETSYLGQA  163 (758)
Q Consensus        91 t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~~l-~~A~~~g~~----~iv~~Ll~~ga~~~~-~~~-~l~~A~~~g~~  163 (758)
                      +.+..-++.|..+-+..+.+.-..+|....+  ++ ..-++.|+.    ++.+.+++.|..++. ..+ .+..++..|..
T Consensus       163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n--~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~  240 (697)
T PLN03081        163 RVLLMHVKCGMLIDARRLFDEMPERNLASWG--TIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA  240 (697)
T ss_pred             HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHH--HHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence            4555666777887777777765554433211  33 344455554    344445555665543 122 23334455555


Q ss_pred             hHHHHH----HhccCCCCCCC-chHHHHHHhcCCHHHHHHHHhCCCC
Q 035705          164 RPAELL----MATDLIRPQVS-VHALVSACFRGFVNVVDTLIKCGVD  205 (758)
Q Consensus       164 ~iv~~L----l~~~~~~~~~~-~t~L~~A~~~g~~~iv~~Ll~~g~d  205 (758)
                      +..+.+    ...+...+..- .+.+..-+..|..+-+..+++.-..
T Consensus       241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~  287 (697)
T PLN03081        241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE  287 (697)
T ss_pred             HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence            544444    23333333322 3344556677887777777765433

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.57  E-value=0.1  Score=48.17  Aligned_cols=114  Identities=20%  Similarity=0.208  Sum_probs=75.3

Q ss_pred             HHHHHHcCCHHHHHhhhcCCCCCcccccceeeccccceeeecccccchhhhhhhcccCCchHHHHHHHcCcHHHHHHHHh
Q 035705           31 LVDAAHVNDVKRANECIGDPFVDVNFVGTVSLRAKKTELVLHDEAAHEVRVVYEEFKTEVTALFLAAHAGNLTLVRKLLS  110 (758)
Q Consensus        31 L~~A~~~G~~~~v~~LL~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~  110 (758)
                      |-.|+..-|.+.+..++...                                    ++-.++|-+|..++..+++-+|++
T Consensus       157 ledAV~AsN~~~i~~~VtdK------------------------------------kdA~~Am~~si~~~K~dva~~lls  200 (284)
T PF06128_consen  157 LEDAVKASNYEEISNLVTDK------------------------------------KDAHQAMWLSIGNAKEDVALYLLS  200 (284)
T ss_pred             HHHHHhhcCHHHHHHHhcch------------------------------------HHHHHHHHHHhcccHHHHHHHHHh
Confidence            55677777777777777653                                    234589999999999999999998


Q ss_pred             CCCCCCcccccCcchhHHhhhChHHHHHHHHh-cCCCccccchHHHHHHHcCChhHHHHHHhccC-------CCCCCCch
Q 035705          111 LGANVNQKLFRGYATTAAVREDHLEILDLLIK-AGACQEACEEALLETSYLGQARPAELLMATDL-------IRPQVSVH  182 (758)
Q Consensus       111 ~ga~~~~~~~~g~~l~~A~~~g~~~iv~~Ll~-~ga~~~~~~~~l~~A~~~g~~~iv~~Ll~~~~-------~~~~~~~t  182 (758)
                      + .....+|       .|-......=++|+|+ +|+                +..|++++++++.       ...+.|.|
T Consensus       201 ~-f~ft~~d-------v~~~~~~~ydieY~LS~h~a----------------~~kvL~~Fi~~Glv~vN~~F~~~NSGdt  256 (284)
T PF06128_consen  201 K-FNFTKQD-------VASMEKELYDIEYLLSEHSA----------------SYKVLEYFINRGLVDVNKKFQKVNSGDT  256 (284)
T ss_pred             h-cceecch-------hhhcCcchhhHHHHHhhcCC----------------cHHHHHHHHhccccccchhhhccCCcch
Confidence            4 2222222       1222222223444443 233                2345566665554       34567889


Q ss_pred             HHHHHHhcCCHHHHHHHHhCCC
Q 035705          183 ALVSACFRGFVNVVDTLIKCGV  204 (758)
Q Consensus       183 ~L~~A~~~g~~~iv~~Ll~~g~  204 (758)
                      .|.-|..+++.+++..||++|+
T Consensus       257 MLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  257 MLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             HHHhHHhcCcHHHHHHHHHcCc
Confidence            9999999999999999999997

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PLN03077 Protein ECB2; Provisional

Probab=94.32  E-value=16  Score=43.88  Aligned_cols=289  Identities=10%  Similarity=0.050  Sum_probs=132.5

Q ss_pred             chHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcH-HHHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCcHHH
Q 035705          314 RTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRP-IHLAARLGSAK----ILRRLISAGCNINSRTAAGETAAM  388 (758)
Q Consensus       314 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~-L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~  388 (758)
                      .+.+..-++.|..+-...+++.-..++       ...++. +..-++.|..+    +.+.+.+.|..++...  -.+.|.
T Consensus       327 n~Li~~y~k~g~~~~A~~vf~~m~~~d-------~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t--~~~ll~  397 (857)
T PLN03077        327 NSLIQMYLSLGSWGEAEKVFSRMETKD-------AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT--IASVLS  397 (857)
T ss_pred             HHHHHHHHhcCCHHHHHHHHhhCCCCC-------eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCcee--HHHHHH
Confidence            345556667778777777776543332       222333 33344556544    3334444566555332  223444


Q ss_pred             HHHHcCCHHHHH----HHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHH-HHHHHc
Q 035705          389 ICARYKHEECLK----FLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPL-MFVTQA  463 (758)
Q Consensus       389 ~A~~~g~~~iv~----~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L-~~a~~~  463 (758)
                      ..+..|..+...    .+.+.|..++..-  ..+.+...+.    .+..+-...+.+.-.   .++...++.+ ...++.
T Consensus       398 a~~~~g~~~~a~~l~~~~~~~g~~~~~~~--~n~Li~~y~k----~g~~~~A~~vf~~m~---~~d~vs~~~mi~~~~~~  468 (857)
T PLN03077        398 ACACLGDLDVGVKLHELAERKGLISYVVV--ANALIEMYSK----CKCIDKALEVFHNIP---EKDVISWTSIIAGLRLN  468 (857)
T ss_pred             HHhccchHHHHHHHHHHHHHhCCCcchHH--HHHHHHHHHH----cCCHHHHHHHHHhCC---CCCeeeHHHHHHHHHHC
Confidence            445556655443    3444455433210  0011111111    122222222222111   1222233333 334455


Q ss_pred             CCHHHHHHHHHhc--CCCCcccCCCCC-cHHHHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHH
Q 035705          464 NDVDALKKLIEWA--DVDLDEQDADGF-SAAMIAAAAGHVE----AFRLLLHAGANIKLQNKYGETAITLAELNRNGEVL  536 (758)
Q Consensus       464 ~~~~~v~~Ll~~~--~~~~~~~~~~g~-t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v  536 (758)
                      |..+-+..+++..  +..+   |..-. +.|...+..|..+    +...+++.|..++..  .+...+..-++.|..+-.
T Consensus       469 g~~~eA~~lf~~m~~~~~p---d~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~--~~naLi~~y~k~G~~~~A  543 (857)
T PLN03077        469 NRCFEALIFFRQMLLTLKP---NSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGF--LPNALLDLYVRCGRMNYA  543 (857)
T ss_pred             CCHHHHHHHHHHHHhCCCC---CHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccce--echHHHHHHHHcCCHHHH
Confidence            6554333333321  1222   22222 2334444556554    444555667665543  234556677788888887


Q ss_pred             HHHHHhhccccCCCCCCCchHHHH-HHHcCCHH----HHHHHHhcCCCCCCCCCCCCcHHHHHH-HcCcHH----HHHHH
Q 035705          537 EQVILEYALEEGQKGSAGFYALHR-AAKRGDFD----LVHTLVSRCYDVNASDADGYTPLMLAA-KSGHGS----VCQLL  606 (758)
Q Consensus       537 ~~ll~~~~~~~~~~~~~g~t~L~~-A~~~g~~~----~v~~Ll~~ga~~n~~d~~g~tpL~~A~-~~~~~~----iv~~L  606 (758)
                      ..++...     ..|...++.+.. .++.|..+    +++.+.+.|..+|...   .+.|..|+ ..|..+    +.+.+
T Consensus       544 ~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T---~~~ll~a~~~~g~v~ea~~~f~~M  615 (857)
T PLN03077        544 WNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT---FISLLCACSRSGMVTQGLEYFHSM  615 (857)
T ss_pred             HHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc---HHHHHHHHhhcChHHHHHHHHHHH
Confidence            7666553     334444555544 44667654    4444455677766544   33344443 445544    34444


Q ss_pred             H-hCCCCCCCCCCCCCcHHHHHHHCCChhh
Q 035705          607 I-SSGAKCDIENARNETALALARENGNGNE  635 (758)
Q Consensus       607 l-~~gad~~~~d~~g~t~L~~A~~~~~~~~  635 (758)
                      . ++|..|+...-  .+-+..-++.|..+-
T Consensus       616 ~~~~gi~P~~~~y--~~lv~~l~r~G~~~e  643 (857)
T PLN03077        616 EEKYSITPNLKHY--ACVVDLLGRAGKLTE  643 (857)
T ss_pred             HHHhCCCCchHHH--HHHHHHHHhCCCHHH
Confidence            4 45666643210  122334456666653

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=93.07  E-value=0.27  Score=38.22  Aligned_cols=46  Identities=15%  Similarity=0.202  Sum_probs=21.5

Q ss_pred             chhHHhhhChHHHHHHHHhcCCCccccchHHHHHHHcCChhHHHHHHhc
Q 035705          124 ATTAAVREDHLEILDLLIKAGACQEACEEALLETSYLGQARPAELLMAT  172 (758)
Q Consensus       124 ~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~l~~A~~~g~~~iv~~Ll~~  172 (758)
                      ++..|+.+|+.||++.+++.+ .++  ...+..|+...+.+++++|++.
T Consensus         9 tl~~Ai~GGN~eII~~c~~~~-~~~--~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    9 TLEYAIIGGNFEIINICLKKN-KPD--NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHhCCCHHHHHHHHHHh-ccH--HHHHHHHHHHhhHHHHHHHHHh
Confidence            344555555555555555433 111  2334455555555555555443

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=92.55  E-value=0.23  Score=38.54  Aligned_cols=48  Identities=17%  Similarity=0.228  Sum_probs=35.4

Q ss_pred             chHHHHHHhcCCHHHHHHHHhCCCCCCcchhhhhhccccccccCCCCchhHHHHhcCCHHHHHHHHHc
Q 035705          181 VHALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQA  248 (758)
Q Consensus       181 ~t~L~~A~~~g~~~iv~~Ll~~g~d~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~  248 (758)
                      ...+..|+..|+.|+++.+++.+ .++                   ...+..|+...+.+++++|+++
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~-~~~-------------------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKN-KPD-------------------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHh-ccH-------------------HHHHHHHHHHhhHHHHHHHHHh
Confidence            34577888888888888888765 222                   2358888888888888888887

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PLN03077 Protein ECB2; Provisional

Probab=91.70  E-value=36  Score=40.82  Aligned_cols=309  Identities=12%  Similarity=0.015  Sum_probs=142.5

Q ss_pred             hHHHHHHHcCCHHHHHHH----HHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHH-H
Q 035705          315 TLIHHAILCNNARAVELL----LNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAM-I  389 (758)
Q Consensus       315 t~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~-~  389 (758)
                      +.+...+..|..+..+.+    .+.|..++.      ....+.+..-++.|+.+-+..+++.-..+   |..-++.+. .
T Consensus       293 ~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~------~~~n~Li~~y~k~g~~~~A~~vf~~m~~~---d~~s~n~li~~  363 (857)
T PLN03077        293 SVISACELLGDERLGREMHGYVVKTGFAVDV------SVCNSLIQMYLSLGSWGEAEKVFSRMETK---DAVSWTAMISG  363 (857)
T ss_pred             HHHHHHHhcCChHHHHHHHHHHHHhCCccch------HHHHHHHHHHHhcCCHHHHHHHHhhCCCC---CeeeHHHHHHH
Confidence            344445556666544444    344554442      12334556666777777777777653222   222333333 3


Q ss_pred             HHHcCCHH----HHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCC
Q 035705          390 CARYKHEE----CLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQAND  465 (758)
Q Consensus       390 A~~~g~~~----iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~  465 (758)
                      .++.|..+    +.+.+.+.|..++...  -.+.+...+..+....-.++.....+.|...+..-  ..+.+..-++.|.
T Consensus       364 ~~~~g~~~~A~~lf~~M~~~g~~Pd~~t--~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~--~n~Li~~y~k~g~  439 (857)
T PLN03077        364 YEKNGLPDKALETYALMEQDNVSPDEIT--IASVLSACACLGDLDVGVKLHELAERKGLISYVVV--ANALIEMYSKCKC  439 (857)
T ss_pred             HHhCCCHHHHHHHHHHHHHhCCCCCcee--HHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHH--HHHHHHHHHHcCC
Confidence            34455543    3334444555554321  11112222222222333445555556665433221  1234455667777


Q ss_pred             HHHHHHHHHhcCCCCcccCCCCCcHHHH-HHHcCCHHH----HHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHH
Q 035705          466 VDALKKLIEWADVDLDEQDADGFSAAMI-AAAAGHVEA----FRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVI  540 (758)
Q Consensus       466 ~~~v~~Ll~~~~~~~~~~~~~g~t~L~~-A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll  540 (758)
                      .+-+..+++..    ..+|...++.+.. -+..|..+-    ++.+++ +..++...  -.+.|...+..|..+..+.+.
T Consensus       440 ~~~A~~vf~~m----~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t--~~~lL~a~~~~g~l~~~~~i~  512 (857)
T PLN03077        440 IDKALEVFHNI----PEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVT--LIAALSACARIGALMCGKEIH  512 (857)
T ss_pred             HHHHHHHHHhC----CCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhH--HHHHHHHHhhhchHHHhHHHH
Confidence            77777777652    1123333333333 334454432    222221 22222111  122334444556655554443


Q ss_pred             H---hhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHH-HHcCcHH----HHHHHHhCCCC
Q 035705          541 L---EYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLA-AKSGHGS----VCQLLISSGAK  612 (758)
Q Consensus       541 ~---~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A-~~~~~~~----iv~~Ll~~gad  612 (758)
                      .   +.+...+.  ..+...+..-++.|+.+-...+.+.-    ..|..-++.|..+ +..|..+    +.+.+.+.|..
T Consensus       513 ~~~~~~g~~~~~--~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~  586 (857)
T PLN03077        513 AHVLRTGIGFDG--FLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN  586 (857)
T ss_pred             HHHHHhCCCccc--eechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            2   22322222  22334556667778877776666543    3344445555443 3556644    44444567877


Q ss_pred             CCCCCCCCCcHHHHH-HHCCChhhHHHHHHHHHHHHHH-hCCCcccc
Q 035705          613 CDIENARNETALALA-RENGNGNEAENVILDELALTLV-LDGTYVKK  657 (758)
Q Consensus       613 ~~~~d~~g~t~L~~A-~~~~~~~~~~~ll~~~~~~~L~-~~g~~~~~  657 (758)
                      ||...   .+.+..| +..|..+....     +...+. ..|..++.
T Consensus       587 Pd~~T---~~~ll~a~~~~g~v~ea~~-----~f~~M~~~~gi~P~~  625 (857)
T PLN03077        587 PDEVT---FISLLCACSRSGMVTQGLE-----YFHSMEEKYSITPNL  625 (857)
T ss_pred             CCccc---HHHHHHHHhhcChHHHHHH-----HHHHHHHHhCCCCch
Confidence            76543   3344334 44566554432     333344 45666654

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=89.25  E-value=50  Score=38.49  Aligned_cols=139  Identities=14%  Similarity=0.062  Sum_probs=62.9

Q ss_pred             HHHHHHcCcHHHH----HHHHhCCCCCCcccccCcch-hHHhhhChHHHHHHHHhcCCCccc-cchHHHH-HHHcCChhH
Q 035705           93 LFLAAHAGNLTLV----RKLLSLGANVNQKLFRGYAT-TAAVREDHLEILDLLIKAGACQEA-CEEALLE-TSYLGQARP  165 (758)
Q Consensus        93 L~~A~~~g~~~iv----~~Ll~~ga~~~~~~~~g~~l-~~A~~~g~~~iv~~Ll~~ga~~~~-~~~~l~~-A~~~g~~~i  165 (758)
                      |...+..++.+.+    ..+...|..++....  ..+ ..-++.|..+-+..+++.-..++. ..+.+.. -+..|..+-
T Consensus       130 l~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~--n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~  207 (697)
T PLN03081        130 VEACIALKSIRCVKAVYWHVESSGFEPDQYMM--NRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYRE  207 (697)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCCCcchHHH--HHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHH
Confidence            3344455555433    444455766653321  133 556667777766666665443332 2333332 345555443


Q ss_pred             HHHHH----hccCCCCCCCchH-HHHHHhcCCHHHHHHH----HhCCCCCCcchhhhhhccccccccCCCCchhHHHHhc
Q 035705          166 AELLM----ATDLIRPQVSVHA-LVSACFRGFVNVVDTL----IKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVS  236 (758)
Q Consensus       166 v~~Ll----~~~~~~~~~~~t~-L~~A~~~g~~~iv~~L----l~~g~d~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~  236 (758)
                      +..++    +.+...+....+. |..++..|..+..+.+    ++.|...+...               ..+.+..-++.
T Consensus       208 A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~---------------~n~Li~~y~k~  272 (697)
T PLN03081        208 AFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFV---------------SCALIDMYSKC  272 (697)
T ss_pred             HHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCcccee---------------HHHHHHHHHHC
Confidence            32222    2232222222222 2333344444444333    34454443322               23334455566


Q ss_pred             CCHHHHHHHHHc
Q 035705          237 RQISVVRLLLQA  248 (758)
Q Consensus       237 g~~~iv~~Ll~~  248 (758)
                      |..+-+..+++.
T Consensus       273 g~~~~A~~vf~~  284 (697)
T PLN03081        273 GDIEDARCVFDG  284 (697)
T ss_pred             CCHHHHHHHHHh
Confidence            666666666554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	758
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-15
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		1e-14
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		2e-14
2xee_A	157	Structural Determinants For Improved Thermal Stabil		2e-14
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-14
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		4e-14
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-14
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		1e-13
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-13
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		3e-13
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-12
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		8e-12
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-11
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		1e-11
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-11
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		4e-11
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		4e-11
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		4e-11
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		7e-11
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		1e-10
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		4e-10
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		2e-09
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		4e-04
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		2e-09
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		5e-09
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		2e-09
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		8e-09
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		1e-08
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		2e-08
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		2e-08
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		3e-08
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		3e-08
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		4e-08
1uoh_A	226	Human Gankyrin Length = 226		6e-08
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		6e-08
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		6e-08
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		7e-08
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		8e-08
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		8e-08
2xen_A	91	Structural Determinants For Improved Thermal Stabil		8e-08
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		9e-08
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		2e-07
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		2e-07
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		1e-06
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		2e-06
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		2e-06
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		2e-06
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		5e-04
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		2e-06
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		3e-06
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		6e-05
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		3e-06
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		3e-06
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		3e-06
1ycs_B	239	P53-53bp2 Complex Length = 239		4e-06
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		4e-06
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		4e-06
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		5e-06
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		2e-05
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		6e-06
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		1e-05
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		1e-05
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		2e-05
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		3e-05
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		3e-05
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		4e-05
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		5e-05
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		5e-05
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		7e-05
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		1e-04
2vge_A	229	Crystal Structure Of The C-Terminal Region Of Human		2e-04
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		2e-04
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		2e-04
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		2e-04
3so8_A	162	Crystal Structure Of Ankra Length = 162		2e-04
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		2e-04
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		2e-04
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		6e-04

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/123 (39%), Positives = 72/123 (58%), Gaps = 1/123 (0%)
Query: 506 LLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRG 565
           LL  GA++   +  G+T + LA  N + EV+ +++L    +   K S G   LH AA+ G
Sbjct: 23  LLENGADVNASDSDGKTPLHLAAENGHKEVV-KLLLSQGADPNAKDSDGKTPLHLAAENG 81
Query: 566 DFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALA 625
             ++V  L+S+  D NA D+DG TPL LAA++GH  V +LL+S GA  +  ++   T L 
Sbjct: 82  HKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLD 141
Query: 626 LAR 628
           LAR
Sbjct: 142 LAR 144

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 135/341 (39%), Gaps = 35/341 (10%)
Query: 343 VQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKH-EECLKF 401
           V   +K +  P+H AAR+G   +++ L+    N N  T AG T   I AR  H E  L  
Sbjct: 73  VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLAL 132
Query: 402 LASEG----------------ADLGLINYA------GQCANSIAKSSRWTL--GFQQAVV 437
           L  E                 A  G +  A          N+  K+    L        +
Sbjct: 133 LEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNL 192
Query: 438 DSIR----SGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDXXXXXXXXX 493
           D ++     G    S   + ++PL    + N V+  + L+++     + +          
Sbjct: 193 DIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG-SANAESVQGVTPLHL 251
Query: 494 XXXXXXXXXFRLLLHAGANIKLQNKYGETAITLAELNRNGEV-LEQVILEYALEEGQKGS 552
                      LLL   AN  L NK G T + L  + + G V +  V++++ +       
Sbjct: 252 AAQEGHAEMVALLLSKQANGNLGNKSGLTPLHL--VAQEGHVPVADVLIKHGVMVDATTR 309
Query: 553 AGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAK 612
            G+  LH A+  G+  LV  L+    DVNA    GY+PL  AA+ GH  +  LL+ +GA 
Sbjct: 310 MGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS 369
Query: 613 CDIENARNETALALARXX--XXXXXXXXVILDELALTLVLD 651
            +  ++   T LA+A+            V+ DE +  LV D
Sbjct: 370 PNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSD 410

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 72/124 (58%), Gaps = 1/124 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
           R+L+  GA++  ++K G T + LA    + E++E V+L+   +   K   G+  LH AA+
Sbjct: 19  RILMANGADVNAKDKDGYTPLHLAAREGHLEIVE-VLLKAGADVNAKDKDGYTPLHLAAR 77
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETA 623
            G  ++V  L+    DVNA D DGYTPL LAA+ GH  + ++L+ +GA  + ++   +T 
Sbjct: 78  EGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTP 137
Query: 624 LALA 627
             LA
Sbjct: 138 FDLA 141

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 72/124 (58%), Gaps = 1/124 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
           R+L+  GA++  ++K G T + LA    + E++E V+L+   +   K   G+  LH AA+
Sbjct: 19  RILMANGADVNAKDKDGYTPLHLAAREGHLEIVE-VLLKAGADVNAKDKDGYTPLHLAAR 77
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETA 623
            G  ++V  L+    DVNA D DGYTPL LAA+ GH  + ++L+ +GA  + ++   +T 
Sbjct: 78  EGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTP 137
Query: 624 LALA 627
             LA
Sbjct: 138 FDLA 141

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 77.0 bits (188), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 70/123 (56%), Gaps = 1/123 (0%)
Query: 506 LLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRG 565
           L+  GA++   +  G T +  A  N + EV+ ++++    +   K S G   LH AA+ G
Sbjct: 23  LIENGADVNASDSDGRTPLHHAAENGHKEVV-KLLISKGADVNAKDSDGRTPLHHAAENG 81
Query: 566 DFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALA 625
             ++V  L+S+  DVNA D+DG TPL  AA++GH  V +LLIS GA  +  ++   T L 
Sbjct: 82  HKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLD 141
Query: 626 LAR 628
           LAR
Sbjct: 142 LAR 144

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 77.0 bits (188), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 73/124 (58%), Gaps = 1/124 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
           R+L+  GA++  ++K G T + LA    + E++E V+L+   +   K   G+  LH AA+
Sbjct: 31  RILMANGADVNAKDKDGYTPLHLAAREGHLEIVE-VLLKAGADVNAKDKDGYTPLHLAAR 89
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETA 623
            G  ++V  L+    DVNA D DGYTPL LAA+ GH  + ++L+ +GA  + ++   +TA
Sbjct: 90  EGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTA 149
Query: 624 LALA 627
             ++
Sbjct: 150 FDIS 153

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 76.3 bits (186), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 47/123 (38%), Positives = 69/123 (56%), Gaps = 1/123 (0%)
Query: 506 LLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRG 565
           L+  GA++   +  G T +  A    + E+++ +I + A +   K S G   LH AAK G
Sbjct: 23  LIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGA-DVNAKDSDGRTPLHYAAKEG 81
Query: 566 DFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALA 625
             ++V  L+S+  DVNA D+DG TPL  AAK GH  + +LLIS GA  +  ++   T L 
Sbjct: 82  HKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLD 141
Query: 626 LAR 628
           LAR
Sbjct: 142 LAR 144

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 72/124 (58%), Gaps = 1/124 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
           R+L+  GA++   + +G T + L   N + E++E V+L+YA +      +G+  LH AA 
Sbjct: 31  RILMANGADVNANDWFGITPLHLVVNNGHLEIIE-VLLKYAADVNASDKSGWTPLHLAAY 89
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETA 623
           RG  ++V  L+    DVNA D  GYTPL LAA+ GH  + ++L+  GA  + ++   +TA
Sbjct: 90  RGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTA 149
Query: 624 LALA 627
             ++
Sbjct: 150 FDIS 153

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 74/124 (59%), Gaps = 1/124 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
           R+L+  GA++  ++  G T + LA    + E++E V+L+   +   K S G   LH AA+
Sbjct: 31  RILMANGADVNARDFTGWTPLHLAAHFGHLEIVE-VLLKNGADVNAKDSLGVTPLHLAAR 89
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETA 623
           RG  ++V  L+    DVNASD+ G+TPL LAAK GH  + ++L+ +GA  + ++   +TA
Sbjct: 90  RGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTA 149
Query: 624 LALA 627
             ++
Sbjct: 150 FDIS 153

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 66/109 (60%), Gaps = 1/109 (0%)
Query: 503 FRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAA 562
            +LLL AGA++  ++K G T + LA  N + EV+ +++LE   +   K   G   LH AA
Sbjct: 18  VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVV-KLLLEAGADVNAKDKNGRTPLHLAA 76
Query: 563 KRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGA 611
           + G  ++V  L+    DVNA D +G TPL LAA++GH  V +LL+ +GA
Sbjct: 77  RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/123 (35%), Positives = 68/123 (55%), Gaps = 1/123 (0%)
Query: 506 LLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRG 565
           LL  GA+    +  G T +  A  N + E++ +++L    +   K S G   LH AA+ G
Sbjct: 23  LLENGADPNASDSDGRTPLHYAAENGHKEIV-KLLLSKGADPNAKDSDGRTPLHYAAENG 81
Query: 566 DFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALA 625
             ++V  L+S+  D NA D+DG TPL  AA++GH  + +LL+S GA  +  ++   T L 
Sbjct: 82  HKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLD 141
Query: 626 LAR 628
           LAR
Sbjct: 142 LAR 144

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 69.3 bits (168), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 71/124 (57%), Gaps = 1/124 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
           R+L+  GA++  ++ YG+T + LA    + E++E V+L+   +      +G   LH AAK
Sbjct: 31  RILMANGADVNAEDTYGDTPLHLAARVGHLEIVE-VLLKNGADVNALDFSGSTPLHLAAK 89
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETA 623
           RG  ++V  L+    DVNA D  G TPL LAA +GH  + ++L+  GA  + ++   +TA
Sbjct: 90  RGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTA 149
Query: 624 LALA 627
             ++
Sbjct: 150 FDIS 153

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 69/124 (55%), Gaps = 1/124 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
           R+L+  GA++   +  G T + LA    + E++E V+L++  +   + + G+  LH AA 
Sbjct: 31  RILMANGADVNAHDDQGSTPLHLAAWIGHPEIVE-VLLKHGADVNARDTDGWTPLHLAAD 89
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETA 623
            G  ++V  L+    DVNA DA G TPL LAA  GH  + ++L+  GA  + ++   +TA
Sbjct: 90  NGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTA 149
Query: 624 LALA 627
             ++
Sbjct: 150 FDIS 153

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 68/124 (54%), Gaps = 1/124 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
           R+L+  GA++   +  G T + LA  N + E++E V+L+   +       G   LH AA 
Sbjct: 31  RILMANGADVNATDNDGYTPLHLAASNGHLEIVE-VLLKNGADVNASDLTGITPLHLAAA 89
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETA 623
            G  ++V  L+    DVNA D DG+TPL LAAK GH  + ++L+  GA  + ++   +TA
Sbjct: 90  TGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTA 149
Query: 624 LALA 627
             ++
Sbjct: 150 FDIS 153

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 69/124 (55%), Gaps = 1/124 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
           R+L+  GA++   +  G T + LA    + E++E V+L+   +     S G   LH AA 
Sbjct: 31  RILMANGADVNASDHVGWTPLHLAAYFGHLEIVE-VLLKNGADVNADDSLGVTPLHLAAD 89
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETA 623
           RG  ++V  L+    DVNA+D +G+TPL LAA  GH  + ++L+  GA  + ++   +TA
Sbjct: 90  RGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTA 149
Query: 624 LALA 627
             ++
Sbjct: 150 FDIS 153

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 71/124 (57%), Gaps = 1/124 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
           R+L+  GA++  ++  G+T + LA +  + E++E V+L++  +       G   LH AA 
Sbjct: 31  RILMANGADVNAEDDSGKTPLHLAAIKGHLEIVE-VLLKHGADVNAADKMGDTPLHLAAL 89
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETA 623
            G  ++V  L+    DVNA+D  G+TPL LAA +GH  + ++L+  GA  + ++   +TA
Sbjct: 90  YGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTA 149
Query: 624 LALA 627
             ++
Sbjct: 150 FDIS 153

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 70/124 (56%), Gaps = 1/124 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
           R+L+  GA++   +  G T + LA  + + E++E V+L++  +       G+  LH AA 
Sbjct: 31  RILMANGADVNAADNTGTTPLHLAAYSGHLEIVE-VLLKHGADVDASDVFGYTPLHLAAY 89
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETA 623
            G  ++V  L+    DVNA D+DG TPL LAAK G+  + ++L+  GA  + ++   +TA
Sbjct: 90  WGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTA 149
Query: 624 LALA 627
             ++
Sbjct: 150 FDIS 153

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 68/124 (54%), Gaps = 1/124 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
           R+L+  GA++   +  G T + LA    + E++E V+L+Y  +     + G   LH AA 
Sbjct: 31  RILMANGADVNATDWLGHTPLHLAAKTGHLEIVE-VLLKYGADVNAWDNYGATPLHLAAD 89
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETA 623
            G  ++V  L+    DVNA D +G+TPL LAA  GH  + ++L+  GA  + ++   +TA
Sbjct: 90  NGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTA 149
Query: 624 LALA 627
             ++
Sbjct: 150 FDIS 153

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 65/121 (53%), Gaps = 1/121 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
           R+L+  GA++   +  G T + LA  N   E++E V+L+   +     SAG   LH AA 
Sbjct: 23  RILMANGADVNATDDNGLTPLHLAAANGQLEIVE-VLLKNGADVNASDSAGITPLHLAAY 81
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETA 623
            G  ++V  L+    DVNA D  G+TPL LAA SG   + ++L+  GA  + ++A   TA
Sbjct: 82  DGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTA 141
Query: 624 L 624
Sbjct: 142 F 142

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 70/124 (56%), Gaps = 1/124 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
           R+L+  GA++  ++  G T + LA  N + E++E V+L+   +      AG   L  AA 
Sbjct: 31  RILMANGADVNAEDASGWTPLHLAAFNGHLEIVE-VLLKNGADVNAVDHAGMTPLRLAAL 89
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETA 623
            G  ++V  L+    DVNA+D +G+TPL LAA  GH  + ++L+ +GA  + ++   +TA
Sbjct: 90  FGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTA 149
Query: 624 LALA 627
             ++
Sbjct: 150 FDIS 153

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 68/124 (54%), Gaps = 1/124 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
           R+L+  GA++   +  G T + LA ++ + E++E V+L++  +       GF  LH AA 
Sbjct: 31  RILIANGADVNAVDNTGLTPLHLAAVSGHLEIVE-VLLKHGADVDAADVYGFTPLHLAAM 89
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETA 623
            G  ++V  L+    DVNA D  G TPL LAA  GH  + ++L+  GA  + ++   +TA
Sbjct: 90  TGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTA 149
Query: 624 LALA 627
             ++
Sbjct: 150 FDIS 153

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 65/124 (52%), Gaps = 1/124 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
           R+L+  GA+    + YG T + +A    + E++E V+L    +     + G   LH AA 
Sbjct: 19  RILMANGADANAYDHYGRTPLHMAAAVGHLEIVE-VLLRNGADVNAVDTNGTTPLHLAAS 77
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETA 623
            G  ++V  L+    DVNA DA G TPL LAA  GH  + ++L+  GA  + ++   +TA
Sbjct: 78  LGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTA 137
Query: 624 LALA 627
             ++
Sbjct: 138 FDIS 141

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 61/149 (40%), Gaps = 15/149 (10%)
Query: 558 LHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIEN 617
           L  AA+ G  D V  L++   D NA D  G TPL +AA  GH  + ++L+ +GA  +  +
Sbjct: 6   LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVD 65
Query: 618 ARNETALALARXXXXXXXXXXVILDELALTLVLDGTYVKKHTKCGKGSPHVKLLKMWGKS 677
               T L LA             L  L +  VL       + K   G   + L   WG  
Sbjct: 66  TNGTTPLHLAAS-----------LGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHL 114
Query: 678 RKRNVVCR-AAEVGPSDTFRWNRRRKFDV 705
               V+ +  A+V   D F    +  FD+
Sbjct: 115 EIVEVLLKHGADVNAQDKF---GKTAFDI 140

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 56/98 (57%), Gaps = 4/98 (4%)
Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
           +G T +H+A    +A  V+ LL+   D    V   SK    P+HLAA+ G A+I++ L++
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGAD----VNARSKDGNTPLHLAAKNGHAEIVKLLLA 63
Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGADL 409
            G ++N+R+  G T   +  +  H E +K L ++GAD+
Sbjct: 64  KGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADV 101

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 43/75 (57%)
Query: 554 GFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKC 613
           G   LH AAK G  + V  L+S+  DVNA   DG TPL LAAK+GH  + +LL++ GA  
Sbjct: 9   GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68
Query: 614 DIENARNETALALAR 628
           +  +    T   LA+
Sbjct: 69  NARSKDGNTPEHLAK 83

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 520 GETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYD 579
           G T + LA  N + EV+ +++LE   +   K   G   LH AA+ G  ++V  L+    D
Sbjct: 2   GRTPLHLAARNGHLEVV-KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 580 VNASDADGYTPLMLAAKSGHGSVCQLLISSGA 611
           VNA D +G TPL LAA++GH  V +LL+ +GA
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 59.3 bits (142), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 1/124 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
           R+L+  GA++   +  G T + LA    + E++E V+L+   +     + G   LH AA 
Sbjct: 31  RILMANGADVNAADVVGWTPLHLAAYWGHLEIVE-VLLKNGADVNAYDTLGSTPLHLAAH 89
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETA 623
            G  ++V  L+    DVNA D +G TPL LAA  GH  + ++L+  GA  + ++   +TA
Sbjct: 90  FGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTA 149
Query: 624 LALA 627
             ++
Sbjct: 150 FDIS 153

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 552 SAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGA 611
            AG   LH AAKRG  ++V  L+    DVNASD+ G TPL LAA  GH  + ++L+  GA
Sbjct: 45  DAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGA 104
Query: 612 KCDIENARNETALALA 627
             + ++   +TA  ++
Sbjct: 105 DVNAQDKFGKTAFDIS 120

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 44/76 (57%)
Query: 552 SAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGA 611
            AG   LH AAKRG  ++V  L+    DVNASD  G TPL LAA  GH  + ++L+  GA
Sbjct: 45  DAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGA 104
Query: 612 KCDIENARNETALALA 627
             + ++   +TA  ++
Sbjct: 105 DVNAQDKFGKTAFDIS 120

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 121/306 (39%), Gaps = 68/306 (22%)
Query: 313 GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISA 372
           G T +H+A+  +    VELLL    D   PV    K    P  LAA  GS K+L+  +S 
Sbjct: 59  GWTPLHNAVQMSREDIVELLLRHGAD---PV-LRKKNGATPFILAAIAGSVKLLKLFLSK 114
Query: 373 GCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGF 432
           G ++N     G TA M  A Y   + LKFL   GA++ L     +         R   G 
Sbjct: 115 GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE------DQERLRKGG 168
Query: 433 QQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDXXXXXXXX 492
             A++D+   G+                     V+ LK L       LDE          
Sbjct: 169 ATALMDAAEKGH---------------------VEVLKIL-------LDEM--------- 191
Query: 493 XXXXXXXXXXFRLLLHAGANIKLQNKYGETAITLAELNRNG---EVLEQVILEYALEEGQ 549
                            GA++   +  G  A+  A L+ +    E +  ++L++  +   
Sbjct: 192 -----------------GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV 234
Query: 550 KGSAGFYALHRAAKRGDFDLVHTLVSRCY-DVNASDADGYTPLMLAAKSGHGSVCQLLIS 608
           +G  G   L  A ++    LV  L+ + + ++N +D+DG T L+LA +     + +LL  
Sbjct: 235 RGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 294
Query: 609 SGAKCD 614
            GA  D
Sbjct: 295 RGASTD 300

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 121/306 (39%), Gaps = 68/306 (22%)
Query: 313 GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISA 372
           G T +H+A+  +    VELLL    D   PV    K    P  LAA  GS K+L+  +S 
Sbjct: 39  GWTPLHNAVQMSREDIVELLLRHGAD---PV-LRKKNGATPFLLAAIAGSVKLLKLFLSK 94
Query: 373 GCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGF 432
           G ++N     G TA M  A Y   + LKFL   GA++ L     +         R   G 
Sbjct: 95  GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE------DQERLRKGG 148
Query: 433 QQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDXXXXXXXX 492
             A++D+   G+                     V+ LK L       LDE          
Sbjct: 149 ATALMDAAEKGH---------------------VEVLKIL-------LDEM--------- 171
Query: 493 XXXXXXXXXXFRLLLHAGANIKLQNKYGETAITLAELNRNG---EVLEQVILEYALEEGQ 549
                            GA++   +  G  A+  A L+ +    E +  ++L++  +   
Sbjct: 172 -----------------GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV 214
Query: 550 KGSAGFYALHRAAKRGDFDLVHTLVSRCY-DVNASDADGYTPLMLAAKSGHGSVCQLLIS 608
           +G  G   L  A ++    LV  L+ + + ++N +D+DG T L+LA +     + +LL  
Sbjct: 215 RGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 274
Query: 609 SGAKCD 614
            GA  D
Sbjct: 275 RGASTD 280

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 519 YGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCY 578
           +G TA+ + +L  N E+  +++L  A  +  K   GF  +H AA+ G  D + TL+    
Sbjct: 37  FGRTALQVMKLG-NPEIARRLLLRGANPD-LKDRTGFAVIHDAARAGQLDTLQTLLEFQA 94
Query: 579 DVNASDADGYTPLMLAAKSGHGSVCQLLIS-SGAKCDIENARNETALALAR 628
           DVN  D +G  PL LAAK GH  V + L+  + +     N + +TA  LAR
Sbjct: 95  DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR 145

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 519 YGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCY 578
           +G TA+ + +L  N E+  +++L  A  +  K   GF  +H AA+ G  D + TL+    
Sbjct: 37  FGRTALQVMKLG-NPEIARRLLLRGANPD-LKDRTGFAVIHDAARAGFLDTLQTLLENQA 94
Query: 579 DVNASDADGYTPLMLAAKSGHGSVCQLLIS-SGAKCDIENARNETALALAR 628
           DVN  D +G  PL LAAK GH  V + L+  + +     N + +TA  LAR
Sbjct: 95  DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR 145

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 1/126 (0%)
Query: 503 FRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAA 562
            + LL  GA +   N+ G T +  A  ++N   +  ++LE       K      A+HRAA
Sbjct: 89  VKALLGKGAQVNAVNQNGCTPLHYAA-SKNRHEIAVMLLEGGANPDAKDHYEATAMHRAA 147
Query: 563 KRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNET 622
            +G+  ++H L+      N  D +G TPL LA         +LL+S GA   IEN   +T
Sbjct: 148 AKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKT 207
Query: 623 ALALAR 628
            L +A+
Sbjct: 208 PLQVAK 213

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 1/126 (0%)
Query: 503 FRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAA 562
            + LL  GA +   N+ G T +  A  ++N   +  ++LE       K      A+HRAA
Sbjct: 90  VKALLGKGAQVNAVNQNGCTPLHYAA-SKNRHEIAVMLLEGGANPDAKDHYEATAMHRAA 148
Query: 563 KRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNET 622
            +G+  ++H L+      N  D +G TPL LA         +LL+S GA   IEN   +T
Sbjct: 149 AKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKT 208
Query: 623 ALALAR 628
            L +A+
Sbjct: 209 PLQVAK 214

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 519 YGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCY 578
           +G TA+ + +L  N E+  +++L  A  +  K   GF  +H AA+ G  D + TL+    
Sbjct: 37  FGRTALQVMKLG-NPEIARRLLLRGANPD-LKDRTGFAVIHDAARAGFLDTLQTLLEFQA 94
Query: 579 DVNASDADGYTPLMLAAKSGHGSVCQLLIS-SGAKCDIENARNETALALAR 628
           DVN  D +G  PL LAAK GH  V + L+  + +     N + +TA  LAR
Sbjct: 95  DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR 145

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 519 YGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCY 578
           +G TA+ + +L  N E+  +++L  A  +  K   GF  +H AA+ G  D + TL+    
Sbjct: 37  FGRTALQVMKLG-NPEIARRLLLRGANPD-LKDRTGFAVIHDAARAGFLDTLQTLLEFQA 94
Query: 579 DVNASDADGYTPLMLAAKSGHGSVCQLLIS-SGAKCDIENARNETALALAR 628
           DVN  D +G  PL LAAK GH  V + L+  + +     N + +TA  LAR
Sbjct: 95  DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR 145

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 1/124 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
           R+L+  GA++   +  G T + LA    + E++E V+L++  +       G   LH AA 
Sbjct: 31  RILMANGADVNATDASGLTPLHLAATYGHLEIVE-VLLKHGADVNAIDIMGSTPLHLAAL 89
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETA 623
            G  ++V  L+    DVNA D  G TPL LAA  GH  + ++L+  GA  + ++   +TA
Sbjct: 90  IGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTA 149
Query: 624 LALA 627
             ++
Sbjct: 150 FDIS 153

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 1/124 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
           R+L+  GA++   +  G T + LA    + E++E V+L++  +       G   LH AA 
Sbjct: 31  RILMANGADVNATDASGLTPLHLAATYGHLEIVE-VLLKHGADVNAIDIXGSTPLHLAAL 89
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETA 623
            G  ++V  L+    DVNA D  G TPL LAA  GH  + ++L+  GA  + ++   +TA
Sbjct: 90  IGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTA 149
Query: 624 LALA 627
             ++
Sbjct: 150 FDIS 153

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 43/70 (61%)
Query: 558 LHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIEN 617
           L  AA+ G  D V  L++   DVNA D DGYTPL LAA+ GH  + ++L+ +GA  + ++
Sbjct: 6   LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 65
Query: 618 ARNETALALA 627
              +TA  ++
Sbjct: 66  KFGKTAFDIS 75

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 43/76 (56%)
Query: 552 SAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGA 611
            AG   LH AAKRG  ++V  L+    DVNA D  G TPL LAA  GH  + ++L+  GA
Sbjct: 45  DAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGA 104
Query: 612 KCDIENARNETALALA 627
             + ++   +TA  ++
Sbjct: 105 DVNAQDKFGKTAFDIS 120

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 1/125 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
           + LL  GA++   N+ G T +  A  ++N   +  ++LE       K      A+HRAA 
Sbjct: 90  KALLVKGAHVNAVNQNGCTPLHYAA-SKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAA 148
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETA 623
           +G+  +VH L+      N  D +G TPL LA         + L++ GA   IEN   +T 
Sbjct: 149 KGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTP 208
Query: 624 LALAR 628
           L +A+
Sbjct: 209 LQVAK 213

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 1/125 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
           + LL  GA++   N+ G T +  A  ++N   +  ++LE       K      A+HRAA 
Sbjct: 90  KALLVKGAHVNAVNQNGCTPLHYAA-SKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAA 148
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETA 623
           +G+  +VH L+      N  D +G TPL LA         + L++ GA   IEN   +T 
Sbjct: 149 KGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTP 208
Query: 624 LALAR 628
           L +A+
Sbjct: 209 LQVAK 213

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 58/111 (52%), Gaps = 3/111 (2%)
Query: 519 YGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCY 578
           +G TA+ + +L  N E+  +++L  A  +  K   G   +H AA+ G  D + TL+    
Sbjct: 37  FGRTALQVMKLG-NPEIARRLLLRGANPD-LKDRTGNAVIHDAARAGFLDTLQTLLEFQA 94
Query: 579 DVNASDADGYTPLMLAAKSGHGSVCQLLIS-SGAKCDIENARNETALALAR 628
           DVN  D +G  PL LAAK GH  V + L+  + +     N + +TA  LAR
Sbjct: 95  DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR 145

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 7/114 (6%)
Query: 517 NKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSR 576
           N++G+TA+ +         LE  +L+       + ++G   +H AA+ G  D +  LV  
Sbjct: 39  NRFGKTALQVMMFGSPAVALE--LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEH 96
Query: 577 CYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIE--NARNETALALAR 628
             DVNA D+ G  P+ LA + GH SV   L     + D+   +A   T L LAR
Sbjct: 97  GADVNALDSTGSLPIHLAIREGHSSVVSFL---APESDLHHRDASGLTPLELAR 147

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 7/114 (6%)
Query: 517 NKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSR 576
           N++G+TA+ +         LE  +L+       + ++G   +H AA+ G  D +  LV  
Sbjct: 41  NRFGKTALQVMMFGSPAVALE--LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEH 98
Query: 577 CYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIE--NARNETALALAR 628
             DVNA D+ G  P+ LA + GH SV   L     + D+   +A   T L LAR
Sbjct: 99  GADVNALDSTGSLPIHLAIREGHSSVVSFL---APESDLHHRDASGLTPLELAR 149

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 100/230 (43%), Gaps = 10/230 (4%)
Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
           +G T +H A++  N  AV  L+N        +  Y+     P+HLA       ++R L++
Sbjct: 8   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 67
Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGA----DLGLINYAGQCANSIAKSSR 427
           AG +  +    G+TAA +   ++   CL+ L    A    DL   NY G  A  +A ++ 
Sbjct: 68  AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE 127
Query: 428 WTLGFQQAVVDSIRSGNIIQSSN-ASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDXX 486
                Q+ V   +  G  I + +  S  SPL+   + N +  ++ L++    +++ Q   
Sbjct: 128 C----QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHG-ANVNAQMYS 182
Query: 487 XXXXXXXXXXXXXXXXFRLLLHAGANIKLQNKYGETAITLAELNRNGEVL 536
                            R L+ +GA+  L+N + +T + +A   R  ++L
Sbjct: 183 GSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL 232

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 4/126 (3%)
Query: 503 FRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYA---LEEGQKGSAGFYALH 559
            RLL+ AGA+    +++G+TA  LA  +R+   L  ++   A   L+   +   G  ALH
Sbjct: 62  VRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH 121
Query: 560 RAAKRGDFDLVHTLVSRCYDVNASD-ADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENA 618
            A      + V  L+ R  D++A D   G +PL+ A ++   S+ QLL+  GA  + +  
Sbjct: 122 VAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMY 181
Query: 619 RNETAL 624
              +AL
Sbjct: 182 SGSSAL 187

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 97/225 (43%), Gaps = 31/225 (13%)
Query: 431 GFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDXXXXXX 490
           G  + V+  +  G  I  +N    + L      ++VD +K L+E    ++++ D      
Sbjct: 51  GDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVE-NGANINQPDNEGWIP 109
Query: 491 XXXXXXXXXXXXFRLLLHAGANIKLQNKYGETAITLA-----------ELNRNG------ 533
                          L+  GA++   N  G+T + +A           E+NR G      
Sbjct: 110 LHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAA 169
Query: 534 -EVLEQVILEYA--------LEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASD 584
            +  E+++L  A        + + +   +G  ALH AA +G  +++  L+   YDVN  D
Sbjct: 170 RKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKD 229
Query: 585 ADGYTPLMLAAKSGHGSVCQLLISSGAKCDIE--NARNETALALA 627
            DG+TPL  AA  G    C++L+ +   CD+E  N   +TA  +A
Sbjct: 230 YDGWTPLHAAAHWGKEEACRILVEN--LCDMEAVNKVGQTAFDVA 272

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 120/302 (39%), Gaps = 29/302 (9%)
Query: 312 NGR--TLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRL 369
           +GR  T +H A   N  R V+LLL    D    V    K  L P+H A   G  ++   L
Sbjct: 55  DGRKSTPLHLAAGYNRVRIVQLLLQHGAD----VHAKDKGGLVPLHNACSYGHYEVTELL 110
Query: 370 ISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWT 429
           +  G  +N+      T     A     E    L S GAD  L+N  G+ A  +A +    
Sbjct: 111 LKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPE-- 168
Query: 430 LGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDXXXXX 489
              ++ +    +  +++Q++  +            D+  +KK +    ++  +       
Sbjct: 169 --LRERLTYEFKGHSLLQAAREA------------DLAKVKKTLALEIINFKQPQSHETA 214
Query: 490 X--XXXXXXXXXXXXFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEE 547
                            LLL  GAN+  +NK   T + +A    + +V+E V+ ++  + 
Sbjct: 215 LHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVME-VLHKHGAKM 273
Query: 548 GQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLI 607
               S G  ALHRAA  G       L+S   D +     G+T    AA+ G+ +V Q+L 
Sbjct: 274 NALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFT----AAQMGNEAVQQILS 329
Query: 608 SS 609
            S
Sbjct: 330 ES 331

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 44/90 (48%)
Query: 538 QVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKS 597
           Q++L++  +   K   G   LH A   G +++   L+     VNA D   +TPL  AA  
Sbjct: 75  QLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASK 134
Query: 598 GHGSVCQLLISSGAKCDIENARNETALALA 627
               VC LL+S GA   + N   ++A+ +A
Sbjct: 135 NRVEVCSLLLSHGADPTLVNCHGKSAVDMA 164

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 517 NKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSR 576
           N++G+TA+ +         LE  +L+       + ++G   +H AA+ G  D +  LV  
Sbjct: 39  NRFGKTALQVMMFGSTAIALE--LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEH 96
Query: 577 CYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIE--NARNETALALA 627
             DVN  D  G  P+ LA + GH +V   L    A+ D+   +AR  T L LA
Sbjct: 97  GADVNVPDGTGALPIHLAVQEGHTAVVSFL---AAESDLHRRDARGLTPLELA 146

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/168 (21%), Positives = 73/168 (43%), Gaps = 9/168 (5%)
Query: 465 DVDALKKLIEWADVDLDEQDXXXXXXXXX--------XXXXXXXXXFRLLLHAGANIKLQ 516
           D++ ++ L+EW + DL++ +                             +  +G  + + 
Sbjct: 23  DLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVT 82
Query: 517 NKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSR 576
           ++ G + + +A L+   +++  ++L++    G + +     LH A ++G F +V  L+  
Sbjct: 83  SQDGSSPLHVAALHGRADLIP-LLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDS 141
Query: 577 CYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETAL 624
               N  D  G TPL+ A   GH  +  LL+  GA  +  N +  TAL
Sbjct: 142 NAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTAL 189

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 35/58 (60%)
Query: 554 GFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGA 611
           G  ALH A   G  ++V  LV    +VNA+D+DG+TPL  AA   +  VC+ L+ SGA
Sbjct: 70  GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 35/58 (60%)
Query: 554 GFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGA 611
           G  ALH A   G  ++V  LV    +VNA+D+DG+TPL  AA   +  VC+ L+ SGA
Sbjct: 70  GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 41/74 (55%)
Query: 554 GFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKC 613
           G   LH AA+ G  ++V  L+    DVNA D  G TPL LAA  GH  + ++L+  GA  
Sbjct: 47  GLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADV 106
Query: 614 DIENARNETALALA 627
           + ++   +TA  ++
Sbjct: 107 NAQDKFGKTAFDIS 120

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 517 NKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSR 576
           N++G+TA+ +         LE  +L+       + ++G   +H AA+ G  D +  LV  
Sbjct: 33  NRFGKTALQVMMFGSTAIALE--LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEH 90
Query: 577 CYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIE--NARNETALALA 627
             DVN  D  G  P+ LA + GH +V   L    A+ D+   +AR  T L LA
Sbjct: 91  GADVNVPDGTGALPIHLAVQEGHTAVVSFL---AAESDLHRRDARGLTPLELA 140

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 97/245 (39%), Gaps = 42/245 (17%)
Query: 353 PIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLI 412
           P+H AA  G   I   L+ AG NI++ +    T  M  A   H E +K+L   GA +   
Sbjct: 14  PLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPK 73
Query: 413 NYAGQ-CANSIAKSSRWTLGFQQAVVDSIRSGNI-IQSSNASRFSPLMFVTQANDVDALK 470
           +  G  C +  AK      G  + V   + +G + +   +   ++P+++ T+   VD +K
Sbjct: 74  DAEGSTCLHLAAKK-----GHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVK 128
Query: 471 KLIEWADVDLDEQDXXXXXXXXXXXXXXXXXXFRLLLHAGANIKLQNKYGETAITLAELN 530
                                             LLL  G++I +++      +  A  +
Sbjct: 129 ----------------------------------LLLSKGSDINIRDNEENICLHWAAFS 154
Query: 531 RNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTP 590
              ++ E ++L    +       G   LH AA+   +D V   +SR  DV   + +G TP
Sbjct: 155 GCVDIAE-ILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETP 213
Query: 591 LMLAA 595
           L  A+
Sbjct: 214 LQCAS 218

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 541 LEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHG 600
           + + +E   K S     LH AA+ G  D+ H LV    +++    D  TPLM AA++ H 
Sbjct: 2   MNFKMEHQNKRSP----LHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHL 57
Query: 601 SVCQLLISSGAKCDIENARNETALALA 627
              + LI +GA  D ++A   T L LA
Sbjct: 58  EAVKYLIKAGALVDPKDAEGSTCLHLA 84

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 42/78 (53%)
Query: 550 KGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISS 609
           K   G   L+ A   G  ++V  L+    DVNA DA G+TPL LAA  GH  + ++L+  
Sbjct: 43  KDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKH 102
Query: 610 GAKCDIENARNETALALA 627
           GA  + ++   +TA  ++
Sbjct: 103 GADVNAQDKFGKTAFDIS 120

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 40/74 (54%)
Query: 554 GFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKC 613
           G   LH AA     ++V  L+    DVNA D DG TPL LAA  GH  + ++L+  GA  
Sbjct: 47  GNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADV 106
Query: 614 DIENARNETALALA 627
           + ++   +TA  ++
Sbjct: 107 NAQDKFGKTAFDIS 120

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 42/70 (60%)
Query: 558 LHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIEN 617
           L  AA+ G  D V  L++   DV A D +G TPL LAA++GH  V +LL+ +GA  + ++
Sbjct: 10  LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQD 69
Query: 618 ARNETALALA 627
              +TA  ++
Sbjct: 70  KFGKTAFDIS 79

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 39/74 (52%)
Query: 554 GFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKC 613
           G   LH AA     ++V  L+    DVNA DA G TPL L A  GH  + ++L+  GA  
Sbjct: 47  GLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADV 106
Query: 614 DIENARNETALALA 627
           + ++   +TA  ++
Sbjct: 107 NAQDKFGKTAFDIS 120

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 60/124 (48%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
           R L+ AG +++  +K   T +  A +N   ++++  I + A+ +   G      LH A +
Sbjct: 26  RELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATR 85
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETA 623
           +G   +V  L+    D +  D +G + + LAA+ GH S+   LI+ G   D+ +    T 
Sbjct: 86  QGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTP 145
Query: 624 LALA 627
           L  A
Sbjct: 146 LMWA 149

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 558 LHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIEN 617
           L  AA+ G  D V  L++   DV A D +G TPL LAA++GH  V +LL+ +GA    ++
Sbjct: 28  LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQD 87
Query: 618 ARNETALALA 627
              +TA  ++
Sbjct: 88  KFGKTAFDIS 97

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 540 ILEYALEEGQ----KGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAA 595
           ++EY L+ G     K   G   LH A   G +++   LV     VN +D   +TPL  AA
Sbjct: 57  VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAA 116
Query: 596 KSGHGSVCQLLISSGAKCDIENARNETALALAR 628
             G   +C+LL+  GA    +N    T L L +
Sbjct: 117 AKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 149

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 540 ILEYALEEGQ----KGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAA 595
           ++EY L+ G     K   G   LH A   G +++   LV     VN +D   +TPL  AA
Sbjct: 61  VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAA 120
Query: 596 KSGHGSVCQLLISSGAKCDIENARNETALALAR 628
             G   +C+LL+  GA    +N    T L L +
Sbjct: 121 AKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 153

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 540 ILEYALEEGQ----KGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAA 595
           ++EY L+ G     K   G   LH A   G +++   LV     VN +D   +TPL  AA
Sbjct: 59  VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAA 118
Query: 596 KSGHGSVCQLLISSGAKCDIENARNETALALAR 628
             G   +C+LL+  GA    +N    T L L +
Sbjct: 119 AKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 151

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 38/70 (54%)
Query: 558 LHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIEN 617
           L  AA+ G  D V  L +   DVNA+D  G+TPL LAA  GH  + ++L+ +GA  +   
Sbjct: 18  LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG 77
Query: 618 ARNETALALA 627
               T L LA
Sbjct: 78  NTGRTPLHLA 87

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 517 NKYGETAITLAELNRNGEVLEQVILEYALEEGQ----KGSAGFYALHRAAKRGDFDLVHT 572
           N  GET + +A +   G++     +EY L+ G     K  AG+  LH A   G   +V  
Sbjct: 7   NHRGETLLHIASIK--GDIPS---VEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVEL 61
Query: 573 LVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGA 611
           L+     VN +     +PL  AAK+GH  + +LL+S GA
Sbjct: 62  LLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGA 100

>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp Length = 229

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 534 EVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLML 593
           EV++Q + E   +  Q    G  ALH A    ++ +V  L++   +VN+ D+ G+TPL  
Sbjct: 35  EVVQQAVKEMN-DPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHC 93
Query: 594 AAKSGHGSVCQLLISSGA 611
           AA      +C  L+  GA
Sbjct: 94  AASCNDTVICMALVQHGA 111

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 42/71 (59%)
Query: 557 ALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIE 616
           ++H+ A +G+   + T + +   +N +D +G+TPLM AA  G  +V + L+ +GA   + 
Sbjct: 22  SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 81
Query: 617 NARNETALALA 627
               E+AL+LA
Sbjct: 82  GKGRESALSLA 92

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 42/71 (59%)
Query: 557 ALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIE 616
           ++H+ A +G+   + T + +   +N +D +G+TPLM AA  G  +V + L+ +GA   + 
Sbjct: 6   SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 65
Query: 617 NARNETALALA 627
               E+AL+LA
Sbjct: 66  GKGRESALSLA 76

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 60/126 (47%), Gaps = 6/126 (4%)
Query: 506 LLHAGA-NIKLQNKYGETAITLAELN--RNGEVLEQVILEYALEE--GQKGSAGFYALHR 560
           LL +G   +  QN+ G + I L  L   +  + +E V+  + L     +   AG  AL  
Sbjct: 130 LLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALML 189
Query: 561 AAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARN 620
           A   G  D+V  L++   DVN  D DG T LM A + GH  +  LL++  + CDI     
Sbjct: 190 AVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPS-CDISLTDR 248
Query: 621 ETALAL 626
           + + AL
Sbjct: 249 DGSTAL 254

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 42/71 (59%)
Query: 557 ALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIE 616
           ++H+ A +G+   + T + +   +N +D +G+TPLM AA  G  +V + L+ +GA   + 
Sbjct: 4   SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 63
Query: 617 NARNETALALA 627
               E+AL+LA
Sbjct: 64  GKGRESALSLA 74

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 313 GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISA 372
           G + +H A    +    E+LL   V ++      +K +  P+H+AA  G A I+  L+  
Sbjct: 34  GTSPLHLAAQYGHFSTTEVLLRAGVSRD----ARTKVDRTPLHMAASEGHANIVEVLLKH 89
Query: 373 GCNINSRTAAGETAAMICARYKHEECLKFLASEGADL 409
           G ++N++     TA      + H+E ++ L   GAD+
Sbjct: 90  GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV 126

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 37/73 (50%)
Query: 552 SAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGA 611
             G   LH AA  G  +++  L+ +  D+NA D    TPL+ A   GH S  +LL+S GA
Sbjct: 33  EGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA 92
Query: 612 KCDIENARNETAL 624
              ++     TAL
Sbjct: 93  DKTVKGPDGLTAL 105

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 36/73 (49%)
Query: 552 SAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGA 611
             G   LH AA  G  +++  L+ +  D+NA D    TPL+ A   GH S  +LL+S GA
Sbjct: 38  EGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA 97
Query: 612 KCDIENARNETAL 624
              ++     TA 
Sbjct: 98  DKTVKGPDGLTAF 110

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	758
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-59
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-46
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-45
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-33
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-44
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-34
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-27
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-22
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-20
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-07
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-43
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-32
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-24
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-19
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-17
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-16
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-14
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-41
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-27
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-21
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-18
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-41
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-40
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-29
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-26
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-23
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-22
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-41
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-39
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-30
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-26
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-26
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-06
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-41
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-29
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-27
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-21
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-18
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-11
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-10
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-40
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-36
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-25
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-24
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-23
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-04
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-40
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-29
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-25
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-22
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-38
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-33
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-18
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-17
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-11
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-08
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-08
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-07
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-37
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-35
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-20
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-18
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-10
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	9e-09
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-36
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-35
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-30
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-21
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-18
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-15
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-14
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	8e-11
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-35
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-31
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-19
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-18
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-13
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-34
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	7e-22
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-18
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-17
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-12
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-08
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-08
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-34
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-27
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-21
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-14
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-12
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-09
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-07
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-07
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-34
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-32
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-26
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-25
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-19
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-18
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-15
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-09
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-07
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	9e-33
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-28
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-27
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	7e-24
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-12
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-09
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-32
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-29
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-23
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-17
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-16
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	9e-13
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-09
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-07
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-07
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-05
3hra_A	201	Ankyrin repeat family protein; structural protein;	9e-32
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-30
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-23
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-20
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-10
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-10
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-10
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-31
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-23
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-21
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-17
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-13
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-07
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-06
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-31
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-25
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-22
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-20
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-11
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-11
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-11
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-08
3v30_A	172	DNA-binding protein rfxank; structural genomics co	8e-07
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-30
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-25
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-17
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-14
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-13
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-11
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-11
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	8e-09
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-29
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-24
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-23
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-18
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-15
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-09
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-08
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-05
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-29
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-21
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-17
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-12
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-10
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-08
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-28
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-25
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-19
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-14
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-10
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-08
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-27
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-20
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	7e-18
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-17
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-08
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-07
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-27
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-27
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	6e-25
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-17
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-16
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-14
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	8e-08
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-07
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-06
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-06
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-27
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-25
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-14
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-08
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-05
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-27
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-18
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	8e-14
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-08
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-07
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-07
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-06
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-05
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	7e-27
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	8e-26
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-25
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-10
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-07
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-07
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	9e-27
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-19
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	7e-16
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-13
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	7e-08
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	6e-06
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-26
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	9e-26
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-19
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	7e-12
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-07
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-07
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-07
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-26
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-15
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-12
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-11
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-10
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-10
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-09
2rfa_A	232	Transient receptor potential cation channel subfa	6e-26
2rfa_A	232	Transient receptor potential cation channel subfa	9e-25
2rfa_A	232	Transient receptor potential cation channel subfa	3e-16
2rfa_A	232	Transient receptor potential cation channel subfa	2e-13
2rfa_A	232	Transient receptor potential cation channel subfa	4e-12
2rfa_A	232	Transient receptor potential cation channel subfa	7e-08
2rfa_A	232	Transient receptor potential cation channel subfa	7e-06
2rfa_A	232	Transient receptor potential cation channel subfa	1e-04
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-25
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-16
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-12
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	5e-11
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	9e-11
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-10
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-07
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	5e-25
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-16
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-13
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-11
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-11
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	6e-11
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-09
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-08
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-07
2etb_A	256	Transient receptor potential cation channel subfam	7e-25
2etb_A	256	Transient receptor potential cation channel subfam	9e-20
2etb_A	256	Transient receptor potential cation channel subfam	2e-16
2etb_A	256	Transient receptor potential cation channel subfam	2e-09
2etb_A	256	Transient receptor potential cation channel subfam	5e-09
2etb_A	256	Transient receptor potential cation channel subfam	2e-07
2etb_A	256	Transient receptor potential cation channel subfam	9e-07
2etb_A	256	Transient receptor potential cation channel subfam	2e-06
2etb_A	256	Transient receptor potential cation channel subfam	5e-06
2etb_A	256	Transient receptor potential cation channel subfam	2e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	8e-25
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-12
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	9e-11
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	5e-06
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-24
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-21
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-14
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	7e-09
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-07
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-07
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-04
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	5e-24
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-19
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-17
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-12
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-11
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-09
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	9e-07
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-04
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	9e-24
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-13
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	9e-11
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-09
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-09
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-07
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-23
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-23
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-12
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-12
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-06
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-22
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-11
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-11
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-09
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-07
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-07
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-05
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-22
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-22
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	7e-19
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-16
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-08
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-06
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	7e-06
2pnn_A	273	Transient receptor potential cation channel subfa	2e-22
2pnn_A	273	Transient receptor potential cation channel subfa	6e-17
2pnn_A	273	Transient receptor potential cation channel subfa	1e-12
2pnn_A	273	Transient receptor potential cation channel subfa	8e-11
2pnn_A	273	Transient receptor potential cation channel subfa	7e-08
2pnn_A	273	Transient receptor potential cation channel subfa	1e-05
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-22
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-16
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-14
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-12
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-09
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-08
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-06
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	5e-21
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	6e-17
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	5e-11
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-09
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	6e-09
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-08
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-08
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	6e-08
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-04
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-19
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-13
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-10
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-09
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	6e-08
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-07
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-07
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-16
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-15
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-13
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-10
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-09
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	9e-13
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	7e-10
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	6e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	4e-06
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-12
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	9e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-07
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-07
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-07
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	5e-04
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	3e-12
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	3e-09
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-08
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	8e-08
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-06
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	5e-04
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	6e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	6e-09
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-08
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  206 bits (528), Expect = 1e-59
 Identities = 101/502 (20%), Positives = 173/502 (34%), Gaps = 108/502 (21%)

Query: 183 ALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVV 242
            L  A F G + +V  L++ G   N  +                   L  A  +    V 
Sbjct: 17  PLHVASFMGHLPIVKNLLQRGASPNVSN-------------VKVETPLHMAARAGHTEVA 63

Query: 243 RLLLQAGVKMDIKVRMG-------AWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSG 295
           + LLQ   K++ K +         A     +                     V+    + 
Sbjct: 64  KYLLQNKAKVNAKAKDDQTPLHCAARIGHTNM--------------------VKLLLENN 103

Query: 296 AILHMLFQHISPNIL-HNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPI 354
           A         +PN+    G T +H A    +   V  LL     +       +K    P+
Sbjct: 104 A---------NPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA----CMTKKGFTPL 150

Query: 355 HLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINY 414
           H+AA+ G  ++   L+    + N+    G T   +   + + + +K L   G        
Sbjct: 151 HVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS------ 204

Query: 415 AGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIE 474
                                            S   + ++PL    + N V+  + L++
Sbjct: 205 -------------------------------PHSPAWNGYTPLHIAAKQNQVEVARSLLQ 233

Query: 475 WADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGE 534
                 + +   G +   +AA  GH E   LLL   AN  L NK G T + L     +  
Sbjct: 234 -YGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVP 292

Query: 535 VLEQVILEYALEEG----QKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTP 590
           V +  +L   ++ G         G+  LH A+  G+  LV  L+    DVNA    GY+P
Sbjct: 293 VAD--VL---IKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSP 347

Query: 591 LMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVL 650
           L  AA+ GH  +  LL+ +GA  +  ++   T LA+A+  G      +V   ++   +  
Sbjct: 348 LHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGY----ISVT--DVLKVVTD 401

Query: 651 DGTYVKKHTKCGKGSPH-VKLL 671
           + ++V    K     P  V  +
Sbjct: 402 ETSFVLVSDKHRMSFPETVDEI 423

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  171 bits (435), Expect = 1e-46
 Identities = 68/321 (21%), Positives = 107/321 (33%), Gaps = 76/321 (23%)

Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
           +G T +H A    +   V+ LL             +     P+H+AAR G  ++ + L+ 
Sbjct: 13  SGLTPLHVASFMGHLPIVKNLLQRGASPNVS----NVKVETPLHMAARAGHTEVAKYLLQ 68

Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLG 431
               +N++    +T     AR  H   +K L    A+  L   AG            T  
Sbjct: 69  NKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAG-----------HT-- 115

Query: 432 FQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAA 491
                                   PL    +   V+ +  L+E  +         GF+  
Sbjct: 116 ------------------------PLHIAAREGHVETVLALLE-KEASQACMTKKGFTPL 150

Query: 492 MIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKG 551
            +AA  G V    LLL   A+     K G T                             
Sbjct: 151 HVAAKYGKVRVAELLLERDAHPNAAGKNGLT----------------------------- 181

Query: 552 SAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGA 611
                 LH A    + D+V  L+ R    ++   +GYTPL +AAK     V + L+  G 
Sbjct: 182 -----PLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG 236

Query: 612 KCDIENARNETALALARENGN 632
             + E+ +  T L LA + G+
Sbjct: 237 SANAESVQGVTPLHLAAQEGH 257

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  166 bits (422), Expect = 7e-45
 Identities = 95/557 (17%), Positives = 163/557 (29%), Gaps = 156/557 (28%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKAGACQ 147
           T L +A+  G+L +V+ LL  GA+ N    +    T    A R  H E+   L++  A  
Sbjct: 16  TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVE--TPLHMAARAGHTEVAKYLLQNKAKV 73

Query: 148 EACEE----ALLETSYLGQARPAELLMATDLIRPQVSVH------ALVSACFRGFVNVVD 197
            A  +     L   + +G     +LL+  +      ++        L  A   G V  V 
Sbjct: 74  NAKAKDDQTPLHCAARIGHTNMVKLLLENN---ANPNLATTAGHTPLHIAAREGHVETVL 130

Query: 198 TLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVR 257
            L++       +                    L  A    ++ V  LLL+     +   +
Sbjct: 131 ALLEKEASQACMT-------------KKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGK 177

Query: 258 MG-------AWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNIL 310
            G           ++D                     V+     G          SP+  
Sbjct: 178 NGLTPLHVAVHHNNLDI--------------------VKLLLPRGG---------SPHSP 208

Query: 311 -HNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRL 369
             NG T +H A   N       LL             S   + P+HLAA+ G A+++  L
Sbjct: 209 AWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE----SVQGVTPLHLAAQEGHAEMVALL 264

Query: 370 ISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWT 429
           +S   N N    +G T   + A+  H      L   G  +      G           +T
Sbjct: 265 LSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMG-----------YT 313

Query: 430 LGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFS 489
                                     PL   +   ++  +K L++    D++ +   G+S
Sbjct: 314 --------------------------PLHVASHYGNIKLVKFLLQ-HQADVNAKTKLGYS 346

Query: 490 AAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQ 549
               AA  GH +   LLL  GA+    +  G T + +A+      V +  +L+   +E  
Sbjct: 347 PLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTD--VLKVVTDETS 404

Query: 550 KGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISS 609
                                         V  SD    +                ++  
Sbjct: 405 -----------------------------FVLVSDKHRMSFP---------ETVDEILDV 426

Query: 610 GAKCDIENARNETALAL 626
                      E  ++ 
Sbjct: 427 SED------EGEELISF 437

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  132 bits (334), Expect = 4e-33
 Identities = 52/262 (19%), Positives = 78/262 (29%), Gaps = 72/262 (27%)

Query: 371 SAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTL 430
           S G +      +G T   + +   H   +K L   GA                       
Sbjct: 2   SPGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGAS---------------------- 39

Query: 431 GFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSA 490
                             SN    +PL    +A   +  K L++     ++ +  D  + 
Sbjct: 40  ---------------PNVSNVKVETPLHMAARAGHTEVAKYLLQ-NKAKVNAKAKDDQTP 83

Query: 491 AMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQK 550
              AA  GH    +LLL   AN  L    G T                            
Sbjct: 84  LHCAARIGHTNMVKLLLENNANPNLATTAGHT---------------------------- 115

Query: 551 GSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSG 610
                  LH AA+ G  + V  L+ +          G+TPL +AAK G   V +LL+   
Sbjct: 116 ------PLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERD 169

Query: 611 AKCDIENARNETALALARENGN 632
           A  +       T L +A  + N
Sbjct: 170 AHPNAAGKNGLTPLHVAVHHNN 191

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  160 bits (407), Expect = 2e-44
 Identities = 74/321 (23%), Positives = 123/321 (38%), Gaps = 56/321 (17%)

Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
               L+  A+   +   V+ LL    +  F  +    T   P+H A ++    I+  L+ 
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWT---PLHNAVQMSREDIVELLLR 60

Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLG 431
            G +   R   G T  ++ A     + LK   S+GAD   +N                  
Sbjct: 61  HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD---VN------------------ 99

Query: 432 FQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEW-ADV--------DLDE 482
                             +   F+  M       V ALK L +  A+V        D + 
Sbjct: 100 ----------------ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQER 143

Query: 483 QDADGFSAAMIAAAAGHVEAFRLLL-HAGANIKLQNKYGETAITLAELNRNGEVLEQVIL 541
               G +A M AA  GHVE  ++LL   GA++   +  G  A+  A L+ +   +E +  
Sbjct: 144 LRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAIT- 202

Query: 542 EYALEEG----QKGSAGFYALHRAAKRGDFDLVHTLVSRCY-DVNASDADGYTPLMLAAK 596
              L+ G     +G  G   L  A ++    LV  L+ + + ++N +D+DG T L+LA +
Sbjct: 203 HLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVE 262

Query: 597 SGHGSVCQLLISSGAKCDIEN 617
                + +LL   GA  D  +
Sbjct: 263 LKLKKIAELLCKRGASTDCGD 283

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  132 bits (334), Expect = 2e-34
 Identities = 65/286 (22%), Positives = 103/286 (36%), Gaps = 68/286 (23%)

Query: 353 PIHLAARLGSAKILRRLISAGCNINSRTA-AGETAAMICARYKHEECLKFLASEGADLGL 411
            +  A +     ++++L+  G N+N +    G T      +   E+ ++ L   GAD   
Sbjct: 8   LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD--- 64

Query: 412 INYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKK 471
                     + K +  T                          P +    A  V  LK 
Sbjct: 65  PV--------LRKKNGAT--------------------------PFLLAAIAGSVKLLKL 90

Query: 472 LIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNR 531
            +     D++E D  GF+A M AA  G V+A + L   GAN+ L+ K  E          
Sbjct: 91  FLS-KGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQ-------- 141

Query: 532 NGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCY-DVNASDADGYTP 590
                            +    G  AL  AA++G  +++  L+     DVNA D  G   
Sbjct: 142 ----------------ERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNA 185

Query: 591 LMLAAKSGHGS----VCQLLISSGAKCDIENARNETALALARENGN 632
           L+ A  S   S    +  LL+  GA  ++   R +T L LA E  +
Sbjct: 186 LIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH 231

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  110 bits (277), Expect = 6e-27
 Identities = 50/202 (24%), Positives = 85/202 (42%), Gaps = 22/202 (10%)

Query: 455 SPLMFVTQANDVDALKKLIEWADVDLDEQDAD-GFSAAMIAAAAGHVEAFRLLLHAGANI 513
             L+   Q  DVD +++L+E    +++ Q+ + G++    A      +   LLL  GA+ 
Sbjct: 7   HLLIKAVQNEDVDLVQQLLE-GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP 65

Query: 514 KLQNKYGETAITLAELNRNGEVLEQVILEYALEEG----QKGSAGFYALHRAAKRGDFDL 569
            L+ K G T   LA +  + +     +L+  L +G    +    GF A   AA  G    
Sbjct: 66  VLRKKNGATPFLLAAIAGSVK-----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA 120

Query: 570 VHTLVSRCYDVNASDAD----------GYTPLMLAAKSGHGSVCQLLIS-SGAKCDIENA 618
           +  L  R  +VN               G T LM AA+ GH  V ++L+   GA  +  + 
Sbjct: 121 LKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN 180

Query: 619 RNETALALARENGNGNEAENVI 640
               AL  A  + + ++ E + 
Sbjct: 181 MGRNALIHALLSSDDSDVEAIT 202

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 95.2 bits (238), Expect = 7e-22
 Identities = 64/335 (19%), Positives = 118/335 (35%), Gaps = 80/335 (23%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYAT--TAAVREDHLEILDLLIKAGACQE 148
             L  A    ++ LV++LL  GANVN +   G  T    AV+    +I++LL++ GA   
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 66

Query: 149 ACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDANA 208
             ++        G          T            + A   G V ++   +  G D N 
Sbjct: 67  LRKK-------NGA---------T----------PFLLAAIAGSVKLLKLFLSKGADVNE 100

Query: 209 IDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWDMDTG 268
            D              +   A + A V  ++  ++ L + G  ++++ +       +  G
Sbjct: 101 CD-------------FYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKG 147

Query: 269 EELRVGAGLAEDYCIT--WCAVEYFESSGAILHMLFQHISPNI---LHNGRTLIHHAILC 323
                          T    A E       +L +L   +  ++    + GR  + HA+L 
Sbjct: 148 GA-------------TALMDAAEK--GHVEVLKILLDEMGADVNACDNMGRNALIHALLS 192

Query: 324 NNARA----VELLLNC-----AVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS-AG 373
           ++         LLL+         +        KT   P+ LA       +++RL+    
Sbjct: 193 SDDSDVEAITHLLLDHGADVNVRGE------RGKT---PLILAVEKKHLGLVQRLLEQEH 243

Query: 374 CNINSRTAAGETAAMICARYKHEECLKFLASEGAD 408
             IN   + G+TA ++    K ++  + L   GA 
Sbjct: 244 IEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS 278

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 90.6 bits (226), Expect = 3e-20
 Identities = 32/149 (21%), Positives = 50/149 (33%), Gaps = 33/149 (22%)

Query: 484 DADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEY 543
             +     + A     V+  + LL  GAN+  Q + G                       
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEG----------------------- 38

Query: 544 ALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVC 603
                     G+  LH A +    D+V  L+    D      +G TP +LAA +G   + 
Sbjct: 39  ----------GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLL 88

Query: 604 QLLISSGAKCDIENARNETALALARENGN 632
           +L +S GA  +  +    TA   A   G 
Sbjct: 89  KLFLSKGADVNECDFYGFTAFMEAAVYGK 117

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 50.9 bits (123), Expect = 5e-07
 Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 22/138 (15%)

Query: 91  TALFLAAHAGNLTLVRKLLS-LGANVNQKLFRG-----YATTAAVREDHLEILDLLIKAG 144
           TAL  AA  G++ +++ LL  +GA+VN     G     +A  ++   D   I  LL+  G
Sbjct: 150 TALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHG 209

Query: 145 ACQEACEE----ALLETSYLGQARPAELLMATDLIRPQVSVH--------ALVSACFRGF 192
           A      E     L+           + L    L +  + ++        AL+ A     
Sbjct: 210 ADVNVRGERGKTPLILAVEKKHLGLVQRL----LEQEHIEINDTDSDGKTALLLAVELKL 265

Query: 193 VNVVDTLIKCGVDANAID 210
             + + L K G   +  D
Sbjct: 266 KKIAELLCKRGASTDCGD 283

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  152 bits (387), Expect = 1e-41
 Identities = 57/327 (17%), Positives = 104/327 (31%), Gaps = 60/327 (18%)

Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
           +G T +H A++  +   ++ LL  +   E  +   +      +HLAA LG A  + +L +
Sbjct: 8   DGDTALHLAVIHQHEPFLDFLLGFSAGHE-YLDLQNDLGQTALHLAAILGEASTVEKLYA 66

Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLG 431
           AG  +      G TA  +  R +   C   L                  S   +   +  
Sbjct: 67  AGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHA 126

Query: 432 FQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAA 491
                                   P    +Q N  +  +   E   + L+ ++ DG +  
Sbjct: 127 ------------------------PAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL 162

Query: 492 MIAAAAGHVEAFRLLLHAGANI-KLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQK 550
            +A      E  RLL  AGA++ K +   G T                            
Sbjct: 163 HVAVIHKDAEMVRLLRDAGADLNKPEPTCGRT---------------------------- 194

Query: 551 GSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSG 610
                  LH A +     ++  L+    D  A    G TPL  A    +  + +LL + G
Sbjct: 195 ------PLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHG 248

Query: 611 AKCDIENARNETALALARENGNGNEAE 637
           A    +     +  + +  + + +  +
Sbjct: 249 APEPEDGGDKLSPCSSSGSDSDSDNRD 275

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  109 bits (275), Expect = 9e-27
 Identities = 40/266 (15%), Positives = 69/266 (25%), Gaps = 62/266 (23%)

Query: 376 INSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQA 435
               T  G+TA  +   ++HE  L FL    A    ++        +      T      
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLD--------LQNDLGQT------ 47

Query: 436 VVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAA 495
                                L       +   ++KL   A   +   +  G +A  +A 
Sbjct: 48  --------------------ALHLAAILGEASTVEKLYA-AGAGVLVAERGGHTALHLAC 86

Query: 496 AAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGF 555
                    +LL    +            +                              
Sbjct: 87  RVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAP------------------- 127

Query: 556 YALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDI 615
            A   +    + +           + A + DG+TPL +A       + +LL  +GA  D+
Sbjct: 128 -AAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGA--DL 184

Query: 616 ENARNE----TALALARENGNGNEAE 637
            N        T L LA E    +  E
Sbjct: 185 -NKPEPTCGRTPLHLAVEAQAASVLE 209

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 94.5 bits (236), Expect = 2e-21
 Identities = 58/292 (19%), Positives = 86/292 (29%), Gaps = 50/292 (17%)

Query: 128 AVREDHLEILDLLIKAGACQEACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSA 187
           AV   H   LD L+   A  E  +      + LGQ                    AL  A
Sbjct: 16  AVIHQHEPFLDFLLGFSAGHEYLDLQ----NDLGQT-------------------ALHLA 52

Query: 188 CFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQ 247
              G  + V+ L   G      +R        ALH          A   R  +   +LLQ
Sbjct: 53  AILGEASTVEKLYAAGAGVLVAER----GGHTALHL---------ACRVRAHTCACVLLQ 99

Query: 248 AGVKMDIKVRMGAWSWDMD-TGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHIS 306
                         +   D T +     A +              E              
Sbjct: 100 PRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRL---------Q 150

Query: 307 PNIL-HNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKI 365
                ++G T +H A++  +A  V LL +   D   P  T  +T   P+HLA    +A +
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRT---PLHLAVEAQAASV 207

Query: 366 LRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQ 417
           L  L+ AG +  +R   G T         +    + L + GA          
Sbjct: 208 LELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKL 259

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 84.1 bits (209), Expect = 5e-18
 Identities = 51/315 (16%), Positives = 77/315 (24%), Gaps = 97/315 (30%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKAGACQ 147
           TAL LAA  G  + V KL + GA V      G+  TA   A R        +L++     
Sbjct: 47  TALHLAAILGEASTVEKLYAAGAGVLVAERGGH--TALHLACRVRAHTCACVLLQPRPSH 104

Query: 148 EACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDAN 207
                               L  + D         A V +                +   
Sbjct: 105 PRDASDTY------------LTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLE 152

Query: 208 AIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWDMDT 267
           A +          LH          AV+ +   +VRLL  AG  ++          +   
Sbjct: 153 AEN----YDGHTPLHV---------AVIHKDAEMVRLLRDAGADLNKP--------EPTC 191

Query: 268 GEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCNNAR 327
           G                                             RT +H A+    A 
Sbjct: 192 G---------------------------------------------RTPLHLAVEAQAAS 206

Query: 328 AVELLLNC-----AVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAA 382
            +ELLL       A           +T   P+  A    +  + R L + G         
Sbjct: 207 VLELLLKAGADPTARMY------GGRT---PLGSALLRPNPILARLLRAHGAPEPEDGGD 257

Query: 383 GETAAMICARYKHEE 397
             +           +
Sbjct: 258 KLSPCSSSGSDSDSD 272

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 57.9 bits (141), Expect = 3e-09
 Identities = 27/173 (15%), Positives = 44/173 (25%), Gaps = 44/173 (25%)

Query: 87  KTEVTALFLAAHAGNLTLVRKLL-SLGANVNQKLFRGYATTA---AVREDHLEILDLLIK 142
            T      + +                  +  + + G+  T    AV     E++ LL  
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH--TPLHVAVIHKDAEMVRLLRD 179

Query: 143 AGACQEACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKC 202
           AGA     E     T                          L  A      +V++ L+K 
Sbjct: 180 AGADLNKPEPTCGRT-------------------------PLHLAVEAQAASVLELLLKA 214

Query: 203 GVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIK 255
           G D  A         +  L +         A++     + RLL   G      
Sbjct: 215 GADPTARMY----GGRTPLGS---------ALLRPNPILARLLRAHGAPEPED 254

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 44.1 bits (105), Expect = 8e-05
 Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 5/55 (9%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIK 142
           T L  A    N  L R L + GA   +        +    +  +   +  D   +
Sbjct: 227 TPLGSALLRPNPILARLLRAHGAPEPEDGGDKL--SPCSSSGSDSDSDNRDEGDE 279

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  153 bits (388), Expect = 6e-41
 Identities = 55/305 (18%), Positives = 104/305 (34%), Gaps = 50/305 (16%)

Query: 353 PIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLI 412
            IH+AAR G    +RRLI  G +   +   G TA  +  ++   +  K+LAS G    L 
Sbjct: 23  KIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLW 82

Query: 413 NYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNI------IQSSNASRFSPLMFVTQANDV 466
           +  GQ    +A                + +         ++ +      P   + + ++ 
Sbjct: 83  H--GQKPIHLA----------------VMANKTDLVVALVEGAKERGQMPESLLNECDER 124

Query: 467 DALKKLIEWADVDLDEQDADGFSAAMIAAAAG--HVEAFRLLLHAGANIKLQNKYGETAI 524
           +         ++    +   G +A       G  ++E  ++L+  GA+   ++K  ET +
Sbjct: 125 EV-------NEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPL 177

Query: 525 TLAELNRNGEVLEQVILEYALEEG----QKGSAGFYALHRAAKRGDFDLVHTLVSRCYDV 580
             A   RN E L+ ++     +           G   LH A      D+    V    DV
Sbjct: 178 MRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDV 237

Query: 581 NASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNE-------------TALALA 627
           N  D +   PL L+ ++    + + L+       I+                    +  A
Sbjct: 238 NMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAA 297

Query: 628 RENGN 632
            +   
Sbjct: 298 ADPSK 302

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  151 bits (385), Expect = 2e-40
 Identities = 44/335 (13%), Positives = 102/335 (30%), Gaps = 71/335 (21%)

Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
           +G+  IH A++ N    V  L+  A ++        +    P  L       ++      
Sbjct: 83  HGQKPIHLAVMANKTDLVVALVEGAKERG-------QM---PESLLNECDEREV------ 126

Query: 372 AGCNINSRTAAGETAAMICARY--KHEECLKFLASEGADLGLINYAGQCANSIAKSSRWT 429
                + +   G+TA   C     ++ E +K L   GA     + A             T
Sbjct: 127 NEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKAD-----------ET 175

Query: 430 LGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWAD----VDLDEQDA 485
                                     PLM   +  + +AL  +++       + LD  + 
Sbjct: 176 --------------------------PLMRAMEFRNREALDLMMDTVPSKSSLRLDYANK 209

Query: 486 DGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYAL 545
            G S    A      +     +  G ++ +++      + L+       + ++++ +  +
Sbjct: 210 QGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDV 269

Query: 546 EEGQ------------KGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLML 593
              Q                    +  AA     +++  L  +  +V  S   G    + 
Sbjct: 270 FLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVK 329

Query: 594 AAKSGHGSVCQLLISSGAKCDIENARNETALALAR 628
             K    +V ++ ++  A     +     + A+++
Sbjct: 330 RKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVSK 364

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  118 bits (299), Expect = 4e-29
 Identities = 53/427 (12%), Positives = 111/427 (25%), Gaps = 82/427 (19%)

Query: 112 GANVNQKLFRGYATTA---AVREDHLEILDLLIKAGACQEACEEALLETSYLGQARPAEL 168
             N  +             A R+   + +  LI+ G                G       
Sbjct: 10  KLNRIKSDDENM--EKIHVAARKGQTDEVRRLIETGVSPTIQNR-------FGC------ 54

Query: 169 LMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCN 228
              T          AL  AC  G V+    L   G   +          +  +H      
Sbjct: 55  ---T----------ALHLACKFGCVDTAKYLASVGEVHSLWHG------QKPIHL----- 90

Query: 229 ALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITW--- 285
               AV++ +  +V  L++   +              +  E      G    +C      
Sbjct: 91  ----AVMANKTDLVVALVEGAKERGQMPESLL----NECDEREVNEIGSHVKHCKGQTAL 142

Query: 286 -CAVEYFESSGAILHMLFQH-ISPNIL-HNGRTLIHHAILCNNARAVELLLNCAVDKE-F 341
              V        ++ +L Q   SP        T +  A+   N  A++L+++    K   
Sbjct: 143 HWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSL 202

Query: 342 PVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKF 401
            +   +K     +H A  +    +  R +  G ++N           +  R       K 
Sbjct: 203 RLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKE 262

Query: 402 LASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVT 461
           L  +     +                              +G  +          +    
Sbjct: 263 LLQKTDVFLIQACPYH------------------------NGTTVLPDRVVWLDFVPAAA 298

Query: 462 QANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGE 521
             +  + L+ L E    ++      G   A+           R+ L   A ++ +++   
Sbjct: 299 DPSKQEVLQLLQE-KLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRA 357

Query: 522 TAITLAE 528
            +  +++
Sbjct: 358 RSSAVSK 364

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  111 bits (279), Expect = 1e-26
 Identities = 43/272 (15%), Positives = 64/272 (23%), Gaps = 62/272 (22%)

Query: 369 LISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRW 428
                 N             + AR    + ++ L   G    + N  G            
Sbjct: 6   TDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFG-----------C 54

Query: 429 TLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEW-ADVDLDEQDADG 487
           T                           L    +   VD  K L               G
Sbjct: 55  T--------------------------ALHLACKFGCVDTAKYLASVGEVHS----LWHG 84

Query: 488 FSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEE 547
                +A  A   +    L+            G+   +L       EV E          
Sbjct: 85  QKPIHLAVMANKTDLVVALVEGAKE------RGQMPESLLNECDEREVNEIGSHV----- 133

Query: 548 GQKGSAGFYALHRAAKRGD--FDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQL 605
             K   G  ALH     G    +++  LV       A D    TPLM A +  +     L
Sbjct: 134 --KHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDL 191

Query: 606 LI-----SSGAKCDIENARNETALALARENGN 632
           ++      S  + D  N +  + L  A     
Sbjct: 192 MMDTVPSKSSLRLDYANKQGNSHLHWAILINW 223

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  100 bits (251), Expect = 6e-23
 Identities = 44/368 (11%), Positives = 102/368 (27%), Gaps = 92/368 (25%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKAGACQ 147
           TAL LA   G +   + L S+G   +      +       AV  +  +++  L++     
Sbjct: 55  TALHLACKFGCVDTAKYLASVGEVHSLW----HGQKPIHLAVMANKTDLVVALVEGAK-- 108

Query: 148 EACEEALLETSYLGQARPAELLM-------ATDLIRPQVSVHALVSACFRG--FVNVVDT 198
           E  +      +   +    E+          T          AL      G  ++ ++  
Sbjct: 109 ERGQMPESLLNECDEREVNEIGSHVKHCKGQT----------ALHWCVGLGPEYLEMIKI 158

Query: 199 LIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLL-----QAGVKMD 253
           L++ G    A D+    + +  L           A+  R    + L++     ++ +++D
Sbjct: 159 LVQLGASPTAKDK----ADETPLMR---------AMEFRNREALDLMMDTVPSKSSLRLD 205

Query: 254 IKVRMG-------AWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHIS 306
              + G             D                        F   G           
Sbjct: 206 YANKQGNSHLHWAILINWEDV--------------------AMRFVEMGI---------D 236

Query: 307 PNIL-HNGRTLIHHAILCNNARAVELLLNCAVDKEFP---------VQTYSKTELRPIHL 356
            N+  +     ++ ++        + LL                  V       L  +  
Sbjct: 237 VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPA 296

Query: 357 AARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAG 416
           AA     ++L+ L      +      G   A+   +       +   +  A +   + + 
Sbjct: 297 AADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSR 356

Query: 417 QCANSIAK 424
             +++++K
Sbjct: 357 ARSSAVSK 364

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 97.2 bits (243), Expect = 6e-22
 Identities = 29/167 (17%), Positives = 51/167 (30%), Gaps = 42/167 (25%)

Query: 471 KLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELN 530
            + ++  ++  + D +      +AA  G  +  R L+  G +  +QN++G T        
Sbjct: 4   SMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCT-------- 55

Query: 531 RNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTP 590
                                     ALH A K G  D    L S     +     G  P
Sbjct: 56  --------------------------ALHLACKFGCVDTAKYLASVGEVHS--LWHGQKP 87

Query: 591 LMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAE 637
           + LA  +    +   L+    +      R +   +L  E       E
Sbjct: 88  IHLAVMANKTDLVVALVEGAKE------RGQMPESLLNECDEREVNE 128

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 48.7 bits (117), Expect = 3e-06
 Identities = 9/76 (11%), Positives = 21/76 (27%), Gaps = 5/76 (6%)

Query: 73  DEAAHEVRVVYEEFKTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AV 129
               H    V  +    +  +  AA      +++ L      V + L  G          
Sbjct: 274 ACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGA--GGAVKRK 331

Query: 130 REDHLEILDLLIKAGA 145
           ++    +  + +   A
Sbjct: 332 KKAAPAVKRMKLAPSA 347

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  152 bits (387), Expect = 6e-41
 Identities = 78/322 (24%), Positives = 118/322 (36%), Gaps = 58/322 (18%)

Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
              T +H A   N  R V+LLL    D    V    K  L P+H A   G  ++   L+ 
Sbjct: 57  RKSTPLHLAAGYNRVRIVQLLLQHGAD----VHAKDKGGLVPLHNACSYGHYEVTELLLK 112

Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLG 431
            G  +N+      T     A     E    L S GAD  L+N  G+ A  +A +      
Sbjct: 113 HGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPE---- 168

Query: 432 FQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAA 491
             +  +     G+            L+   +  D+  +KK +   ++   +Q     +A 
Sbjct: 169 -LRERLTYEFKGH-----------SLLQAAREADLAKVKKTLA-LEIINFKQPQSHETAL 215

Query: 492 MIAAAAGH---VEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEG 548
             A A+ H    +   LLL  GAN+  +NK   T                          
Sbjct: 216 HCAVASLHPKRKQVAELLLRKGANVNEKNKDFMT-------------------------- 249

Query: 549 QKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLIS 608
                    LH AA+R   D++  L      +NA D+ G T L  AA +GH   C+LL+S
Sbjct: 250 --------PLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLS 301

Query: 609 SGAKCDIENARNETALALAREN 630
            G+   I + +  TA  +  E 
Sbjct: 302 YGSDPSIISLQGFTAAQMGNEA 323

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  148 bits (375), Expect = 2e-39
 Identities = 63/304 (20%), Positives = 101/304 (33%), Gaps = 62/304 (20%)

Query: 353 PIHLAARLGSAKILRR-LISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGL 411
            +  AAR G+ + L   L     N ++      T   + A Y     ++ L   GAD+  
Sbjct: 27  ELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHA 86

Query: 412 INYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKK 471
            +  G                                       PL         +  + 
Sbjct: 87  KDKGG-----------LV--------------------------PLHNACSYGHYEVTEL 109

Query: 472 LIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNR 531
           L++     ++  D   F+    AA+   VE   LLL  GA+  L N +G++A+ +A    
Sbjct: 110 LLK-HGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPE 168

Query: 532 NGEVLEQVI-----LEYALEEGQKGSA---------------GFYALHRAAKRGDFDLVH 571
             E L         L+ A E                         ALH A          
Sbjct: 169 LRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQ 228

Query: 572 T---LVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALAR 628
               L+ +  +VN  + D  TPL +AA+  H  V ++L   GAK +  ++  +TAL  A 
Sbjct: 229 VAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAA 288

Query: 629 ENGN 632
             G+
Sbjct: 289 LAGH 292

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  121 bits (306), Expect = 3e-30
 Identities = 54/341 (15%), Positives = 93/341 (27%), Gaps = 93/341 (27%)

Query: 297 ILHMLFQHISPNILH-NGRTLIHHAILCNNA-RAVELLLNCAVDKEFPVQTYSKTELRPI 354
            L +        +     +  +  A    N  + + LL    V+           +  P+
Sbjct: 7   ALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVN----CHASDGRKSTPL 62

Query: 355 HLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINY 414
           HLAA     +I++ L+  G +++++   G         Y H E  + L   GA    +N 
Sbjct: 63  HLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGAC---VN- 118

Query: 415 AGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIE 474
                                            + +  +F+PL      N V+    L+ 
Sbjct: 119 ---------------------------------AMDLWQFTPLHEAASKNRVEVCSLLLS 145

Query: 475 WADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGE 534
               D    +  G SA  +A      E                                 
Sbjct: 146 -HGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGH------------------------ 180

Query: 535 VLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLA 594
                                 +L +AA+  D   V   ++             T L  A
Sbjct: 181 ----------------------SLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCA 218

Query: 595 AKSGHGS---VCQLLISSGAKCDIENARNETALALARENGN 632
             S H     V +LL+  GA  + +N    T L +A E  +
Sbjct: 219 VASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAH 259

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  111 bits (279), Expect = 1e-26
 Identities = 41/299 (13%), Positives = 73/299 (24%), Gaps = 96/299 (32%)

Query: 364 KILRRLISAGCNINSRTAAGETAAMICARYKH-EECLKFLASEGADLGLINYAGQCANSI 422
           K    L              +   +  AR  + E+ +  L     +              
Sbjct: 5   KSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVN-------------- 50

Query: 423 AKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEW-ADVDLD 481
                                    +S+  + +PL      N V  ++ L++  ADV   
Sbjct: 51  -----------------------CHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV--H 85

Query: 482 EQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVIL 541
            +D  G      A + GH E   LLL  GA +   + +  T                   
Sbjct: 86  AKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFT------------------- 126

Query: 542 EYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGS 601
                           LH AA +   ++   L+S   D    +  G + + +A       
Sbjct: 127 ---------------PLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRE 171

Query: 602 VCQLLIS---------------------SGAKCDIENARNETALALARENGNGNEAENV 639
                                              +   +ETAL  A  + +    +  
Sbjct: 172 RLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVA 230

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  108 bits (273), Expect = 8e-26
 Identities = 70/442 (15%), Positives = 123/442 (27%), Gaps = 134/442 (30%)

Query: 91  TALFLAAHAGNLTLVRKLL-SLGANVNQKLFRGYATTA---AVREDHLEILDLLIKAGAC 146
             L  AA +GN   +  LL  L  N +    R    T    A   + + I+ LL++ GA 
Sbjct: 26  DELLEAARSGNEEKLMALLTPLNVNCHASDGRKS--TPLHLAAGYNRVRIVQLLLQHGAD 83

Query: 147 QEACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDA 206
             A ++        G                      L +AC  G   V + L+K G   
Sbjct: 84  VHAKDKG-------GLV-------------------PLHNACSYGHYEVTELLLKHGACV 117

Query: 207 NAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWDMD 266
           NA+D              +    L  A    ++ V  LLL  G    +    G       
Sbjct: 118 NAMD-------------LWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHG------- 157

Query: 267 TGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNI---LHNGRTLIHHAILC 323
                               A          + M               G +L+  A   
Sbjct: 158 ------------------KSA----------VDMAPTPELRERLTYEFKGHSLLQAAREA 189

Query: 324 NNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLG---SAKILRRLISAGCNINSRT 380
           + A+  + L    ++ +       ++    +H A         ++   L+  G N+N + 
Sbjct: 190 DLAKVKKTLALEIINFK-----QPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKN 244

Query: 381 AAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSI 440
               T   + A   H + ++ L   GA +  ++  GQ                       
Sbjct: 245 KDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQ----------------------- 281

Query: 441 RSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHV 500
                         + L     A  +   + L+     D       GF+AA +       
Sbjct: 282 --------------TALHRAALAGHLQTCRLLLS-YGSDPSIISLQGFTAAQMGN----- 321

Query: 501 EAFRLLLHAGANIKLQNKYGET 522
           EA + +L     ++  +     
Sbjct: 322 EAVQQILSESTPMRTSDVDYRL 343

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 48.3 bits (116), Expect = 5e-06
 Identities = 37/177 (20%), Positives = 60/177 (33%), Gaps = 47/177 (26%)

Query: 85  EFKTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDH---LEILD 138
            ++ +  +L  AA   +L  V+K L+L     ++       TA   AV   H    ++ +
Sbjct: 174 TYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHE--TALHCAVASLHPKRKQVAE 231

Query: 139 LLIKAGACQEACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDT 198
           LL++ GA            +             T           L  A  R   +V++ 
Sbjct: 232 LLLRKGANVNE-------KNKDFM---------T----------PLHVAAERAHNDVMEV 265

Query: 199 LIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIK 255
           L K G   NA+D             +    AL  A ++  +   RLLL  G    I 
Sbjct: 266 LHKHGAKMNALD-------------SLGQTALHRAALAGHLQTCRLLLSYGSDPSII 309

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  149 bits (378), Expect = 6e-41
 Identities = 45/266 (16%), Positives = 90/266 (33%), Gaps = 38/266 (14%)

Query: 353 PIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLI 412
            I  A + G  +  R L+ AG ++        T     A     + +K+  S+GA +   
Sbjct: 12  DIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIV--- 68

Query: 413 NYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKL 472
                  + +      T                          PL + T+   +  + +L
Sbjct: 69  -------DQLGGDLNST--------------------------PLHWATRQGHLSMVVQL 95

Query: 473 IEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRN 532
           ++    D    D +G S   +AA  GH      L+  G ++ + ++ G T +  A    +
Sbjct: 96  MK-YGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTH 154

Query: 533 G-EVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPL 591
             +    ++                ALH A   G+  ++  L+    +V+A +  G + L
Sbjct: 155 SVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESAL 214

Query: 592 MLAAKSGHGSVCQLLISSGAKCDIEN 617
            LA +  +  +   L  +      +N
Sbjct: 215 DLAKQRKNVWMINHLQEARQAKGYDN 240

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  115 bits (291), Expect = 3e-29
 Identities = 37/156 (23%), Positives = 68/156 (43%)

Query: 480 LDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQV 539
           +   D       + A   G  E  R L+ AG +++  +K   T +  A +N   ++++  
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61

Query: 540 ILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGH 599
           I + A+ +   G      LH A ++G   +V  L+    D +  D +G + + LAA+ GH
Sbjct: 62  ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGH 121

Query: 600 GSVCQLLISSGAKCDIENARNETALALARENGNGNE 635
            S+   LI+ G   D+ +    T L  A    +  +
Sbjct: 122 TSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVD 157

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  110 bits (279), Expect = 1e-27
 Identities = 46/261 (17%), Positives = 79/261 (30%), Gaps = 75/261 (28%)

Query: 375 NINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQ 434
           ++           +   +Y   E  + L   G D+   +               T     
Sbjct: 1   HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKEN-----------VT----- 44

Query: 435 AVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDAD-GFSAAMI 493
                                 L +    N +D +K  I      +D+   D   +    
Sbjct: 45  ---------------------LLHWAAINNRIDLVKYYIS-KGAIVDQLGGDLNSTPLHW 82

Query: 494 AAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSA 553
           A   GH+     L+  GA+  L +  G +                               
Sbjct: 83  ATRQGHLSMVVQLMKYGADPSLIDGEGCS------------------------------- 111

Query: 554 GFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHG-SVCQLLISSGAK 612
               +H AA+ G   +V  L+++  DV+  D +G TPLM AA   H     +LL++    
Sbjct: 112 ---CIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS 168

Query: 613 CDIENARN-ETALALARENGN 632
            ++ +  +  TAL  A   GN
Sbjct: 169 VNLGDKYHKNTALHWAVLAGN 189

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 92.9 bits (232), Expect = 2e-21
 Identities = 54/336 (16%), Positives = 88/336 (26%), Gaps = 108/336 (32%)

Query: 183 ALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVV 242
            +V A   G       L++ G D    D               +   L  A ++ +I +V
Sbjct: 12  DIVKATQYGIYERCRELVEAGYDVRQPD-------------KENVTLLHWAAINNRIDLV 58

Query: 243 RLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLF 302
           +  +  G  +D            D                                    
Sbjct: 59  KYYISKGAIVDQL--------GGDLN---------------------------------- 76

Query: 303 QHISPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGS 362
                       T +H A    +   V  L+    D               IHLAA+ G 
Sbjct: 77  -----------STPLHWATRQGHLSMVVQLMKYGADPS----LIDGEGCSCIHLAAQFGH 121

Query: 363 AKILRRLISAGCNINSRTAAGETAAMICARYKHE-ECLKFLASEGADLGLINYAGQCANS 421
             I+  LI+ G +++     G T  M  A   H  +  + L +    +          N 
Sbjct: 122 TSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSV----------NL 171

Query: 422 IAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLD 481
             K  + T                           L +   A +   +  L+E A  ++D
Sbjct: 172 GDKYHKNT--------------------------ALHWAVLAGNTTVISLLLE-AGANVD 204

Query: 482 EQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQN 517
            Q+  G SA  +A    +V     L  A       N
Sbjct: 205 AQNIKGESALDLAKQRKNVWMINHLQEARQAKGYDN 240

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 83.6 bits (208), Expect = 3e-18
 Identities = 51/332 (15%), Positives = 93/332 (28%), Gaps = 117/332 (35%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKAGACQ 147
             +  A   G     R+L+  G +V Q        T    A   + ++++   I  GA  
Sbjct: 11  WDIVKATQYGIYERCRELVEAGYDVRQPDKENV--TLLHWAAINNRIDLVKYYISKGAIV 68

Query: 148 EACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDAN 207
           +     L  T                          L  A  +G +++V  L+K G D +
Sbjct: 69  DQLGGDLNST-------------------------PLHWATRQGHLSMVVQLMKYGADPS 103

Query: 208 AIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMG-------A 260
            ID                C+ +  A      S+V  L+  G  +D+  + G       A
Sbjct: 104 LID-------------GEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAA 150

Query: 261 WSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNIL--HNGRTLIH 318
           +         +                     +            S N+   ++  T +H
Sbjct: 151 YR-----THSVDP--------------TRLLLTFNV---------SVNLGDKYHKNTALH 182

Query: 319 HAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINS 378
            A+L  N   + L                                     L+ AG N+++
Sbjct: 183 WAVLAGNTTVISL-------------------------------------LLEAGANVDA 205

Query: 379 RTAAGETAAMICARYKHEECLKFLASEGADLG 410
           +   GE+A  +  + K+   +  L       G
Sbjct: 206 QNIKGESALDLAKQRKNVWMINHLQEARQAKG 237

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 63.6 bits (156), Expect = 2e-11
 Identities = 45/183 (24%), Positives = 69/183 (37%), Gaps = 36/183 (19%)

Query: 90  VTALFLAAHAGNLTLVRKLLSLGANVNQK-LFRGYATTA---AVREDHLEILDLLIKAGA 145
           VT L  AA    + LV+  +S GA V+Q         T    A R+ HL ++  L+K GA
Sbjct: 43  VTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNS--TPLHWATRQGHLSMVVQLMKYGA 100

Query: 146 CQEACEE----ALLETSYLGQARPAELLMATDLIRPQVSVH--------ALVSACFRGF- 192
                +      +   +  G       L+A         V          L+ A +R   
Sbjct: 101 DPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKG-----QDVDMMDQNGMTPLMWAAYRTHS 155

Query: 193 VNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKM 252
           V+    L+   V  N  D+        ALH          AV++   +V+ LLL+AG  +
Sbjct: 156 VDPTRLLLTFNVSVNLGDKY---HKNTALHW---------AVLAGNTTVISLLLEAGANV 203

Query: 253 DIK 255
           D +
Sbjct: 204 DAQ 206

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 59.0 bits (144), Expect = 7e-10
 Identities = 28/169 (16%), Positives = 54/169 (31%), Gaps = 44/169 (26%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDH-LEILDLLIKAGAC 146
           + + LAA  G+ ++V  L++ G +V+     G   T    A    H ++   LL+     
Sbjct: 111 SCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGM--TPLMWAAYRTHSVDPTRLLLTFNVS 168

Query: 147 QEACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDA 206
               ++    T                         AL  A   G   V+  L++ G + 
Sbjct: 169 VNLGDKYHKNT-------------------------ALHWAVLAGNTTVISLLLEAGANV 203

Query: 207 NAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIK 255
           +A +                 +AL  A   + + ++  L +A       
Sbjct: 204 DAQN-------------IKGESALDLAKQRKNVWMINHLQEARQAKGYD 239

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  152 bits (385), Expect = 2e-40
 Identities = 67/338 (19%), Positives = 107/338 (31%), Gaps = 54/338 (15%)

Query: 311 HNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLI 370
           H             N    +           P +  S      +H  A  GS  I   + 
Sbjct: 59  HYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEP-EPESPI---KLHTEAA-GSYAITEPIT 113

Query: 371 SAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTL 430
               NI        T     A     E  + L    A   +       A+          
Sbjct: 114 RESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECI----AAGAD---------- 158

Query: 431 GFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSA 490
                          + + +    +PLM    A     +  L++ A  D    +    SA
Sbjct: 159 ---------------VNAMDCDENTPLMLAVLARRRRLVAYLMK-AGADPTIYNKSERSA 202

Query: 491 AMIAAAAGHVEAFRLLL---HAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEE 547
              AAA         +L       +I+  ++ G TA+ +   N   + +     +  +E+
Sbjct: 203 LHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVA--SAKLLVEK 260

Query: 548 G------------QKGSAGFYALHRAAKRGDFDLVHTLVSRC-YDVNASDADGYTPLMLA 594
           G             +   G  ALH AA+  +  +V  LV     + +  D DG TP+MLA
Sbjct: 261 GAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLA 320

Query: 595 AKSGHGSVCQLLISSGAKCDIENARNETALALARENGN 632
           A+ G   V   LI  GA  +  +A + TA  LA+ N +
Sbjct: 321 AQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNH 358

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  140 bits (354), Expect = 2e-36
 Identities = 58/349 (16%), Positives = 115/349 (32%), Gaps = 74/349 (21%)

Query: 288 VEYFESSGAILHMLFQHISPNIL-HNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTY 346
            ++  ++  I         P          +H      +    E +   +V+       +
Sbjct: 77  GDFNHTNLQI---------PTEPEPESPIKLHTEA-AGSYAITEPITRESVNII--DPRH 124

Query: 347 SKTELRPIHLAARLGSAKI--------LRRLISAGCNINSRTAAGETAAMICARYKHEEC 398
           ++T    +H  A   SA+          +  I+AG ++N+      T  M+    +    
Sbjct: 125 NRT---VLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRL 181

Query: 399 LKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLM 458
           + +L   GAD                                         N S  S L 
Sbjct: 182 VAYLMKAGAD-------------------------------------PTIYNKSERSALH 204

Query: 459 FVTQANDVDALKKLIE--WADVDLDEQDADGFSAAMIAAAAGH---VEAFRLLLHAGANI 513
                 D   +  ++       D++E D +G +A MI A       V + +LL+  GA +
Sbjct: 205 QAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKV 264

Query: 514 KL--------QNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRG 565
                     +   G TA+  A    N  +++ ++ E    + ++   G   +  AA+ G
Sbjct: 265 DYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEG 324

Query: 566 DFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCD 614
             ++V  L+ +   V A DA  +T   LA  + H ++  +      + +
Sbjct: 325 RIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPERE 373

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  108 bits (273), Expect = 1e-25
 Identities = 51/303 (16%), Positives = 89/303 (29%), Gaps = 74/303 (24%)

Query: 353 PIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLI 412
            +  A+  G  K            N                 ++    F  +        
Sbjct: 40  SLLEASYDGYIKR---------QRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEP 90

Query: 413 NYAGQCANSIAKSSRWTLGFQQAVVDS-IRSG-NIIQSSNASRFSPLMFVTQANDVDALK 470
                       +         A+ +   R   NII   +    + L ++   +  +  +
Sbjct: 91  EPESPIKLHTEAAGS------YAITEPITRESVNIIDPRH--NRTVLHWIASNSSAEKSE 142

Query: 471 KLIEWAD-------VDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETA 523
            LI            D++  D D  +  M+A  A        L+ AGA+  + NK   + 
Sbjct: 143 DLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERS- 201

Query: 524 ITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCY---DV 580
                                            ALH+AA   DF ++  +++      D+
Sbjct: 202 ---------------------------------ALHQAAANRDFGMMVYMLNSTKLKGDI 228

Query: 581 NASDADGYTPLMLAAKSGH---GSVCQLLISSGAKCDIENARN--------ETALALARE 629
              D +G T LM+ A +      +  +LL+  GAK D + A           TAL  A +
Sbjct: 229 EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQ 288

Query: 630 NGN 632
             N
Sbjct: 289 VSN 291

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  105 bits (265), Expect = 1e-24
 Identities = 57/378 (15%), Positives = 106/378 (28%), Gaps = 69/378 (18%)

Query: 61  SLRAKKTELVLHDEAAHEVRVVYEEFKTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLF 120
           S+ + +  L+      +  R   E     +         GN  L     +      +   
Sbjct: 33  SITSSQHSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEP 92

Query: 121 RGYATTAAVREDHLEILDLLIKAGACQEACEE---ALLETSYLGQARPAELL---MATDL 174
                          I + + +              L   +    A  +E L    A + 
Sbjct: 93  ESPIKLHTEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKEC 152

Query: 175 IRPQVSVH--------ALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFD 226
           I     V+         L+ A       +V  L+K G D    +               +
Sbjct: 153 IAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYN-------------KSE 199

Query: 227 CNALVGAVVSRQISVVRLLLQ---AGVKMDIKVRMG-------AWSWDMDTGEELRVGAG 276
            +AL  A  +R   ++  +L        ++   R G       A +   D          
Sbjct: 200 RSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVA------- 252

Query: 277 LAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCNNARAVELLLNC- 335
                     + +     GA +         +  + GRT +H+A   +N   V+ L+   
Sbjct: 253 ----------SAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEK 302

Query: 336 -----AVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMIC 390
                  D+        KT   PI LAA+ G  +++  LI  G ++ +  A   TA  + 
Sbjct: 303 GSNKDKQDE------DGKT---PIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLA 353

Query: 391 ARYKHEECLKFLASEGAD 408
               H   +        +
Sbjct: 354 QANNHHNIVDIFDRCRPE 371

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  101 bits (253), Expect = 4e-23
 Identities = 37/205 (18%), Positives = 54/205 (26%), Gaps = 28/205 (13%)

Query: 450 NASRFSPLMFVTQAN-----DVDALKKLIEWA------DVDLDEQDADGFSAAMIAAAAG 498
           NAS + P M   + N      + + +  +  A          +E               G
Sbjct: 13  NASVWMPPMENEEKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNG 72

Query: 499 HVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEG---QKGSAGF 555
           +                        +               I E    E           
Sbjct: 73  NDFLGDFNHTNLQIPTEPEPESPIKLHTEAAGS----YA--ITEPITRESVNIIDPRHNR 126

Query: 556 YALHRAAKRGDFDLVHTLVSRCY--------DVNASDADGYTPLMLAAKSGHGSVCQLLI 607
             LH  A     +    L+            DVNA D D  TPLMLA  +    +   L+
Sbjct: 127 TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLM 186

Query: 608 SSGAKCDIENARNETALALARENGN 632
            +GA   I N    +AL  A  N +
Sbjct: 187 KAGADPTIYNKSERSALHQAAANRD 211

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 30/176 (17%), Positives = 59/176 (33%), Gaps = 52/176 (29%)

Query: 91  TALFLAA---HAGNLTLVRKLLSLGANVNQKLFRGYAT------TA---AVREDHLEILD 138
           TAL + A       +   + L+  GA V+        +      TA   A +  ++ I+ 
Sbjct: 237 TALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVK 296

Query: 139 LLI-KAGACQEACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVD 197
            L+ + G+ ++  +E        G+         T           ++ A   G + VV 
Sbjct: 297 YLVGEKGSNKDKQDED-------GK---------T----------PIMLAAQEGRIEVVM 330

Query: 198 TLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMD 253
            LI+ G    A+D               D  A   A  +   ++V +  +   + +
Sbjct: 331 YLIQQGASVEAVD-------------ATDHTARQLAQANNHHNIVDIFDRCRPERE 373

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  149 bits (378), Expect = 3e-40
 Identities = 62/327 (18%), Positives = 107/327 (32%), Gaps = 60/327 (18%)

Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
             +          +   +E  +      +  V+            A   G  + + RL+ 
Sbjct: 7   KQKRNEQLKRWIGSETDLEPPVVKRKKTK--VKFDDGA---VFLAACSSGDTEEVLRLLE 61

Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLG 431
            G +IN     G TA        + + +KFL   GA+   IN           +  W   
Sbjct: 62  RGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN---IN--------QPDNEGWI-- 108

Query: 432 FQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAA 491
                                   PL        +D  + LI      +   +++G +  
Sbjct: 109 ------------------------PLHAAASCGYLDIAEYLIS-QGAHVGAVNSEGDTPL 143

Query: 492 MIAAAAGHVEAFRLLL-HAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEG-- 548
            IA      E  +  +   G +I+   K  E  +                 ++       
Sbjct: 144 DIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRD------------ARQWLNSGHIN 191

Query: 549 --QKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLL 606
             +   +G  ALH AA +G  +++  L+   YDVN  D DG+TPL  AA  G    C++L
Sbjct: 192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL 251

Query: 607 ISSGAKCDIENARNETALALARENGNG 633
           + +    +  N   +TA  +A E+  G
Sbjct: 252 VENLCDMEAVNKVGQTAFDVADEDILG 278

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  117 bits (296), Expect = 3e-29
 Identities = 61/341 (17%), Positives = 98/341 (28%), Gaps = 106/341 (31%)

Query: 288 VEYFESSGAILHMLFQHISPNIL-HNGRTLIHHAILCNNARAVELLLNC-----AVDKEF 341
           V      GA           N    +G T +H A + +N   V+ L+         D E 
Sbjct: 56  VLRLLERGA---------DINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEG 106

Query: 342 PVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKF 401
                      P+H AA  G   I   LIS G ++ +  + G+T   I      EE L+ 
Sbjct: 107 ------WI---PLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQN 157

Query: 402 LASE-GADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFV 460
             +  G D+       +                                           
Sbjct: 158 EVNRQGVDIEAARKEEERIMLR-------------------------------------- 179

Query: 461 TQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYG 520
                 DA + L     ++       G +A  +AAA G+ E  +LL+ A  ++ +++  G
Sbjct: 180 ------DARQWLNS-GHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDG 232

Query: 521 ETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDV 580
            T                                   LH AA  G  +    LV    D+
Sbjct: 233 WT----------------------------------PLHAAAHWGKEEACRILVENLCDM 258

Query: 581 NASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNE 621
            A +  G T   +A +   G + +L             R +
Sbjct: 259 EAVNKVGQTAFDVADEDILGYLEELQKKQNL--LHSEKREK 297

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  105 bits (264), Expect = 4e-25
 Identities = 37/157 (23%), Positives = 56/157 (35%), Gaps = 10/157 (6%)

Query: 480 LDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQV 539
           +   DA       +    G        +      K++   G   +         EV    
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEV---- 56

Query: 540 ILEYALEEG----QKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAA 595
                LE G         G  ALH+A    + D+V  LV    ++N  D +G+ PL  AA
Sbjct: 57  --LRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAA 114

Query: 596 KSGHGSVCQLLISSGAKCDIENARNETALALARENGN 632
             G+  + + LIS GA     N+  +T L +A E   
Sbjct: 115 SCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAM 151

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 98.3 bits (246), Expect = 1e-22
 Identities = 47/333 (14%), Positives = 93/333 (27%), Gaps = 67/333 (20%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTAAVREDHLEILDLLIKAGACQEAC 150
               L    G+ T +   +        K   G    AA      E +  L++ GA     
Sbjct: 10  RNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYA 69

Query: 151 EE----ALLETSYLGQARPAELLMATDLIRPQVSVH--------ALVSACFRGFVNVVDT 198
                 AL +          +      L+    +++         L +A   G++++ + 
Sbjct: 70  NVDGLTALHQACIDDNVDMVKF-----LVENGANINQPDNEGWIPLHAAASCGYLDIAEY 124

Query: 199 LIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRM 258
           LI  G    A++             +     L  A       +++  +            
Sbjct: 125 LISQGAHVGAVN-------------SEGDTPLDIAEEEAMEELLQNEVNRQGV------- 164

Query: 259 GAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNI---LHNGRT 315
                D++   +      L +       A ++  S              N      +G T
Sbjct: 165 -----DIEAARKEEERIMLRD-------ARQWLNSGHI-----------NDVRHAKSGGT 201

Query: 316 LIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCN 375
            +H A        ++LL+    D          T   P+H AA  G  +  R L+   C+
Sbjct: 202 ALHVAAAKGYTEVLKLLIQARYDVNI-KDYDGWT---PLHAAAHWGKEEACRILVENLCD 257

Query: 376 INSRTAAGETAAMICARYKHEECLKFLASEGAD 408
           + +    G+TA  +          +    +   
Sbjct: 258 MEAVNKVGQTAFDVADEDILGYLEELQKKQNLL 290

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 49.0 bits (118), Expect = 2e-06
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 87  KTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKA 143
           K+  TAL +AA  G   +++ L+    +VN K + G+  T    A      E   +L++ 
Sbjct: 197 KSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGW--TPLHAAAHWGKEEACRILVEN 254

Query: 144 GA 145
             
Sbjct: 255 LC 256

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  142 bits (360), Expect = 2e-38
 Identities = 55/263 (20%), Positives = 95/263 (36%), Gaps = 46/263 (17%)

Query: 353 PIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLI 412
           P+H AA  G   I   L+ AG NI++ +    T  M  A   H E +K+L   GA     
Sbjct: 14  PLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL---- 69

Query: 413 NYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKL 472
                                            +   +A   + L    +    + ++ L
Sbjct: 70  ---------------------------------VDPKDAEGSTCLHLAAKKGHYEVVQYL 96

Query: 473 IEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRN 532
           +    +D++ QD  G++  + A    HV+  +LLL  G++I +++      +  A  +  
Sbjct: 97  LSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGC 156

Query: 533 GEVLEQVILEYALEEG----QKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGY 588
            +     I E  L            G   LH AA+   +D V   +SR  DV   + +G 
Sbjct: 157 VD-----IAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGE 211

Query: 589 TPLMLAAKSGHGSVCQLLISSGA 611
           TPL  A+ +        +  +  
Sbjct: 212 TPLQCASLNSQVWSALQMSKALQ 234

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  125 bits (317), Expect = 9e-33
 Identities = 45/187 (24%), Positives = 86/187 (45%), Gaps = 1/187 (0%)

Query: 446 IQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRL 505
            +  + ++ SPL    +A  VD    L++ A  ++D    D  +  M AA   H+EA + 
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHMLVQ-AGANIDTCSEDQRTPLMEAAENNHLEAVKY 62

Query: 506 LLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRG 565
           L+ AGA +  ++  G T + LA    + EV++ ++    ++   +   G+  +  A +  
Sbjct: 63  LIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYK 122

Query: 566 DFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALA 625
             DLV  L+S+  D+N  D +    L  AA SG   + ++L+++       N   ++ L 
Sbjct: 123 HVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLH 182

Query: 626 LARENGN 632
           +A     
Sbjct: 183 IAARENR 189

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 83.2 bits (207), Expect = 5e-18
 Identities = 35/203 (17%), Positives = 62/203 (30%), Gaps = 45/203 (22%)

Query: 312 NGRTLIHHAILCNNARAVELLL-NCAVDKEFPVQT-YSKTELRPIHLAARLGSAKILRRL 369
            G T +H A    +   V+ LL N  +D     Q     T   P+  A       +++ L
Sbjct: 76  EGSTCLHLAAKKGHYEVVQYLLSNGQMDVN--CQDDGGWT---PMIWATEYKHVDLVKLL 130

Query: 370 ISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWT 429
           +S G +IN R           A     +  + L +   DL  +N  G            +
Sbjct: 131 LSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHG-----------DS 179

Query: 430 LGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFS 489
                                     PL    + N  D +   +   D D+  ++ +G +
Sbjct: 180 --------------------------PLHIAARENRYDCVVLFLS-RDSDVTLKNKEGET 212

Query: 490 AAMIAAAAGHVEAFRLLLHAGAN 512
               A+    V +   +  A  +
Sbjct: 213 PLQCASLNSQVWSALQMSKALQD 235

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 80.9 bits (201), Expect = 2e-17
 Identities = 47/245 (19%), Positives = 85/245 (34%), Gaps = 57/245 (23%)

Query: 183 ALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVV 242
            L +A   G V++   L++ G + +                      L+ A  +  +  V
Sbjct: 14  PLHAAAEAGHVDICHMLVQAGANIDTCS-------------EDQRTPLMEAAENNHLEAV 60

Query: 243 RLLLQAGVKMDIKVRMG-------AWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSG 295
           + L++AG  +D K   G       A     +                     V+Y  S+G
Sbjct: 61  KYLIKAGALVDPKDAEGSTCLHLAAKKGHYEV--------------------VQYLLSNG 100

Query: 296 AILHMLFQHISPNIL---HNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELR 352
            +          ++      G T +  A    +   V+LLL+   D           E  
Sbjct: 101 QM----------DVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN----IRDNEENI 146

Query: 353 PIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLI 412
            +H AA  G   I   L++A C++++    G++   I AR    +C+    S  +D+ L 
Sbjct: 147 CLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLK 206

Query: 413 NYAGQ 417
           N  G+
Sbjct: 207 NKEGE 211

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 64.0 bits (157), Expect = 1e-11
 Identities = 40/183 (21%), Positives = 64/183 (34%), Gaps = 40/183 (21%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKAGACQ 147
           + L  AA AG++ +   L+  GAN++         T    A   +HLE +  LIKAGA  
Sbjct: 13  SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQR--TPLMEAAENNHLEAVKYLIKAGALV 70

Query: 148 EACEE----ALLETSYLGQARPAELLM---ATDLIRPQVSVH--------ALVSACFRGF 192
           +  +      L   +  G     + L+     D       V+         ++ A     
Sbjct: 71  DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMD-------VNCQDDGGWTPMIWATEYKH 123

Query: 193 VNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKM 252
           V++V  L+  G D N  D          LH          A  S  + +  +LL A   +
Sbjct: 124 VDLVKLLLSKGSDINIRDN----EENICLHW---------AAFSGCVDIAEILLAAKCDL 170

Query: 253 DIK 255
              
Sbjct: 171 HAV 173

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 54.3 bits (132), Expect = 3e-08
 Identities = 23/163 (14%), Positives = 45/163 (27%), Gaps = 44/163 (26%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKAGACQ 147
           T +  A    ++ LV+ LLS G+++N +            A     ++I ++L+ A    
Sbjct: 113 TPMIWATEYKHVDLVKLLLSKGSDINIRDNEEN--ICLHWAAFSGCVDIAEILLAAKCDL 170

Query: 148 EACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDAN 207
            A           G +                    L  A      + V   +    D  
Sbjct: 171 HAVNIH-------GDS-------------------PLHIAARENRYDCVVLFLSRDSDVT 204

Query: 208 AIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGV 250
             +                   L  A ++ Q+     + +A  
Sbjct: 205 LKN-------------KEGETPLQCASLNSQVWSALQMSKALQ 234

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 52.8 bits (128), Expect = 8e-08
 Identities = 34/169 (20%), Positives = 58/169 (34%), Gaps = 45/169 (26%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGA-NVNQKLFRGYATTA---AVREDHLEILDLLIKAGAC 146
           T L LAA  G+  +V+ LLS G  +VN +   G+  T    A    H++++ LL+  G+ 
Sbjct: 79  TCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGW--TPMIWATEYKHVDLVKLLLSKGSD 136

Query: 147 QEACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDA 206
               +                                L  A F G V++ + L+    D 
Sbjct: 137 INIRDNE-------ENI-------------------CLHWAAFSGCVDIAEILLAAKCDL 170

Query: 207 NAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIK 255
           +A++                 + L  A    +   V L L     + +K
Sbjct: 171 HAVN-------------IHGDSPLHIAARENRYDCVVLFLSRDSDVTLK 206

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 50.5 bits (122), Expect = 4e-07
 Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 87  KTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKA 143
             E   L  AA +G + +   LL+   +++     G   +    A RE+  + + L +  
Sbjct: 142 NEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGD--SPLHIAARENRYDCVVLFLSR 199

Query: 144 GA 145
            +
Sbjct: 200 DS 201

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  140 bits (356), Expect = 2e-37
 Identities = 44/308 (14%), Positives = 91/308 (29%), Gaps = 81/308 (26%)

Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
           +  + +H A +  +  ++  L++        V   +   + P+H A   G    ++ L+ 
Sbjct: 58  SDWSPMHEAAIHGHQLSLRNLISQGWA----VNIITADHVSPLHEACLGGHLSCVKILLK 113

Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLG 431
            G  +N  TA   T           +C+  L   GA    +           +S   +  
Sbjct: 114 HGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGAS---VQ---------PESDLAS-- 159

Query: 432 FQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAA 491
                                   P+    +   V+ +  LI +   ++D + +   +  
Sbjct: 160 ------------------------PIHEAARRGHVECVNSLIAY-GGNIDHKISHLGTPL 194

Query: 492 MIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKG 551
            +A         + LL +GA++  Q K  ++                             
Sbjct: 195 YLACENQQRACVKKLLESGADVN-QGKGQDSP---------------------------- 225

Query: 552 SAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGA 611
                 LH   +    +L   L+    D  A +A+G  P+ L       +    L   GA
Sbjct: 226 ------LHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQL-FLEREGA 278

Query: 612 KCDIENAR 619
              +   +
Sbjct: 279 --SLPKPK 284

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  135 bits (343), Expect = 1e-35
 Identities = 45/248 (18%), Positives = 94/248 (37%), Gaps = 18/248 (7%)

Query: 389 ICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQS 448
           + + + H      L   G+ +  ++      +             +         N +  
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDG------SKPAGPRDFPGIRLLSNPLMG 54

Query: 449 SNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLH 508
              S +SP+          +L+ LI      ++   AD  S    A   GH+   ++LL 
Sbjct: 55  DAVSDWSPMHEAAIHGHQLSLRNLIS-QGWAVNIITADHVSPLHEACLGGHLSCVKILLK 113

Query: 509 AGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEG---QKGSAGFYALHRAAKRG 565
            GA +        T +  A ++ + + +   +L   L+ G   Q  S     +H AA+RG
Sbjct: 114 HGAQVNGVTADWHTPLFNACVSGSWDCVN--LL---LQHGASVQPESDLASPIHEAARRG 168

Query: 566 DFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARN-ETAL 624
             + V++L++   +++   +   TPL LA ++   +  + L+ SGA  D+   +  ++ L
Sbjct: 169 HVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGA--DVNQGKGQDSPL 226

Query: 625 ALARENGN 632
                  +
Sbjct: 227 HAVVRTAS 234

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 91.0 bits (227), Expect = 3e-20
 Identities = 55/354 (15%), Positives = 105/354 (29%), Gaps = 102/354 (28%)

Query: 187 ACFRGFVNVVDTLIKCGVDANAID--RVLLQSSKPALHANF----------------DCN 228
                  +    L+  G    ++D  +  +  SKPA   +F                D +
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWS 61

Query: 229 ALVGAVVSRQISVVRLLLQAGVKMDIKVRMG-------AWSWDMDTGEELRVGAGLAEDY 281
            +  A +      +R L+  G  ++I                 +                
Sbjct: 62  PMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSC-------------- 107

Query: 282 CITWCAVEYFESSGAILHMLFQHISPNIL-HNGRTLIHHAILCNNARAVELLLNCAVDKE 340
                 V+     GA           N +  +  T + +A +  +   V LLL      +
Sbjct: 108 ------VKILLKHGA---------QVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ 152

Query: 341 FPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLK 400
              ++   +   PIH AAR G  + +  LI+ G NI+ + +   T   +    +   C+K
Sbjct: 153 --PESDLAS---PIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVK 207

Query: 401 FLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFV 460
            L   GAD   +N             + +                          PL  V
Sbjct: 208 KLLESGAD---VN---------QGKGQDS--------------------------PLHAV 229

Query: 461 TQANDVDALKKLIEW-ADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANI 513
            +    +    L+++ AD     ++A+G     +      +     L   GA++
Sbjct: 230 VRTASEELACLLMDFGADT--QAKNAEGKRPVELVPPESPLAQL-FLEREGASL 280

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 84.1 bits (209), Expect = 5e-18
 Identities = 50/330 (15%), Positives = 92/330 (27%), Gaps = 65/330 (19%)

Query: 95  LAAHAGNLTLVRKLLSLGANVNQKLFRGYATTAAVREDHLEILDLLIKAGACQEACEE-- 152
           + +   +      L+  G+++     +      +      +   + + +           
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDW 60

Query: 153 -ALLETSYLGQARPAELLMATDLIRPQVSVH--------ALVSACFRGFVNVVDTLIKCG 203
             + E +  G       L     I    +V+         L  AC  G ++ V  L+K G
Sbjct: 61  SPMHEAAIHGHQLSLRNL-----ISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHG 115

Query: 204 VDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSW 263
              N +           L           A VS     V LLLQ G  +           
Sbjct: 116 AQVNGVTA----DWHTPLFN---------ACVSGSWDCVNLLLQHGASVQ---------- 152

Query: 264 DMDTGEELRVGAGLAEDYCIT--WCAVEYFESSGAILHMLFQH-ISPNIL-HNGRTLIHH 319
                          E    +    A          ++ L  +  + +    +  T ++ 
Sbjct: 153 --------------PESDLASPIHEAARR--GHVECVNSLIAYGGNIDHKISHLGTPLYL 196

Query: 320 AILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSR 379
           A        V+ LL    D          +   P+H   R  S ++   L+  G +  ++
Sbjct: 197 ACENQQRACVKKLLESGADVN--QGKGQDS---PLHAVVRTASEELACLLMDFGADTQAK 251

Query: 380 TAAGETAAMICARYKHEECLKFLASEGADL 409
            A G+    +         L FL  EGA L
Sbjct: 252 NAEGKRPVELVPPESPLAQL-FLEREGASL 280

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 61.4 bits (150), Expect = 2e-10
 Identities = 35/166 (21%), Positives = 60/166 (36%), Gaps = 45/166 (27%)

Query: 87  KTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKA 143
              V+ L  A   G+L+ V+ LL  GA VN      +  T    A      + ++LL++ 
Sbjct: 90  ADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWH--TPLFNACVSGSWDCVNLLLQH 147

Query: 144 GACQEACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCG 203
           GA  +   E+ L +                          +  A  RG V  V++LI  G
Sbjct: 148 GASVQP--ESDLAS-------------------------PIHEAARRGHVECVNSLIAYG 180

Query: 204 VDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAG 249
            + +             L+          A  ++Q + V+ LL++G
Sbjct: 181 GNIDHKIS----HLGTPLYL---------ACENQQRACVKKLLESG 213

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 56.3 bits (137), Expect = 9e-09
 Identities = 18/123 (14%), Positives = 38/123 (30%), Gaps = 32/123 (26%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKAGACQ 147
           + +  AA  G++  V  L++ G N++ K+      T    A        +  L+++GA  
Sbjct: 159 SPIHEAARRGHVECVNSLIAYGGNIDHKISHLG--TPLYLACENQQRACVKKLLESGADV 216

Query: 148 EACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDAN 207
              +    ++                          L +        +   L+  G D  
Sbjct: 217 NQGKG--QDS-------------------------PLHAVVRTASEELACLLMDFGADTQ 249

Query: 208 AID 210
           A +
Sbjct: 250 AKN 252

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 47.1 bits (113), Expect = 1e-05
 Identities = 13/58 (22%), Positives = 18/58 (31%), Gaps = 6/58 (10%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKAGA 145
           + L       +  L   L+  GA+   K   G           E  L  L  L + GA
Sbjct: 224 SPLHAVVRTASEELACLLMDFGADTQAKNAEGK--RPVELVPPESPLAQL-FLEREGA 278

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  136 bits (346), Expect = 1e-36
 Identities = 63/302 (20%), Positives = 102/302 (33%), Gaps = 71/302 (23%)

Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
           +G T +H A++  N  AV  L+N        +  Y+     P+HLA       ++R L++
Sbjct: 8   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 67

Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGL-INYAGQCANSIAKSSRWTL 430
           AG +  +    G+TAA +   ++   CL+ L    A   L +                  
Sbjct: 68  AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLE----------------- 110

Query: 431 GFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDA-DGFS 489
                            + N    + L         + ++ L+E    D+D  D   G S
Sbjct: 111 -----------------ARNYDGLTALHVAVNTECQETVQLLLE-RGADIDAVDIKSGRS 152

Query: 490 AAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQ 549
             + A     +   +LLL  GAN+  Q   G +                           
Sbjct: 153 PLIHAVENNSLSMVQLLLQHGANVNAQMYSGSS--------------------------- 185

Query: 550 KGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISS 609
                  ALH A+ RG   LV TLV    D +  +    TPLM+A       + +   + 
Sbjct: 186 -------ALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATR 238

Query: 610 GA 611
            A
Sbjct: 239 PA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  132 bits (334), Expect = 5e-35
 Identities = 51/288 (17%), Positives = 94/288 (32%), Gaps = 79/288 (27%)

Query: 353 PIHLAARLGSAKILRRLIS----AGCNINSRTAAGETAAMICARYKHEECLKFLASEGAD 408
           P+H+A   G+   + RL++     G  ++      +T   +         ++ L + GA 
Sbjct: 12  PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS 71

Query: 409 LGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDA 468
              ++  GQ                                     +      +      
Sbjct: 72  PMALDRHGQ-------------------------------------TAAHLACEHRSPTC 94

Query: 469 LKKLIE---WADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQN-KYGETAI 524
           L+ L++      +DL+ ++ DG +A  +A      E  +LLL  GA+I   + K G +  
Sbjct: 95  LRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSP- 153

Query: 525 TLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASD 584
                                            L  A +     +V  L+    +VNA  
Sbjct: 154 ---------------------------------LIHAVENNSLSMVQLLLQHGANVNAQM 180

Query: 585 ADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGN 632
             G + L  A+  G   + + L+ SGA   ++N  N+T L +AR    
Sbjct: 181 YSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRV 228

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  119 bits (302), Expect = 1e-30
 Identities = 46/186 (24%), Positives = 80/186 (43%), Gaps = 7/186 (3%)

Query: 454 FSPLMFVTQANDVDALKKLIEW---ADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAG 510
            +PL       ++ A+ +L+        +LD  +    +   +A         RLL+ AG
Sbjct: 10  DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 69

Query: 511 ANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEG---QKGSAGFYALHRAAKRGDF 567
           A+    +++G+TA  LA  +R+   L  ++   A        +   G  ALH A      
Sbjct: 70  ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQ 129

Query: 568 DLVHTLVSRCYDVNASDA-DGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALAL 626
           + V  L+ R  D++A D   G +PL+ A ++   S+ QLL+  GA  + +     +AL  
Sbjct: 130 ETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHS 189

Query: 627 ARENGN 632
           A   G 
Sbjct: 190 ASGRGL 195

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 91.7 bits (229), Expect = 5e-21
 Identities = 33/161 (20%), Positives = 49/161 (30%), Gaps = 42/161 (26%)

Query: 480 LDEQDADGFSAAMIAAAAGHVEAFRLLL----HAGANIKLQNKYGETAITLAELNRNGEV 535
               D DG +   IA   G++ A   L+      G  + + N   +T             
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTP------------ 49

Query: 536 LEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAA 595
                                 LH A       +V  LV+      A D  G T   LA 
Sbjct: 50  ----------------------LHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC 87

Query: 596 KSGHGSVCQLLISSGAKCDIE-NARNE---TALALARENGN 632
           +    +  + L+ S A   ++  ARN    TAL +A     
Sbjct: 88  EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC 128

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 82.9 bits (206), Expect = 7e-18
 Identities = 26/202 (12%), Positives = 66/202 (32%), Gaps = 39/202 (19%)

Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
           +G+T  H A    +   +  LL+ A      ++  +   L  +H+A      + ++ L+ 
Sbjct: 78  HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLE 137

Query: 372 AGCNINSRTA-AGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTL 430
            G +I++    +G +  +          ++ L   GA++    Y+G            + 
Sbjct: 138 RGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSG-----------SS- 185

Query: 431 GFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSA 490
                                     L   +    +  ++ L+  +  D   ++    + 
Sbjct: 186 -------------------------ALHSASGRGLLPLVRTLVR-SGADSSLKNCHNDTP 219

Query: 491 AMIAAAAGHVEAFRLLLHAGAN 512
            M+A +   ++  R      A+
Sbjct: 220 LMVARSRRVIDILRGKATRPAS 241

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 76.0 bits (188), Expect = 1e-15
 Identities = 46/247 (18%), Positives = 80/247 (32%), Gaps = 53/247 (21%)

Query: 183 ALVSACFRGFVNVVDTLI----KCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQ 238
            L  A  +G +  V  L+    + G + +  +       +  LH          AV++  
Sbjct: 12  PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNN----LRQTPLHL---------AVITTL 58

Query: 239 ISVVRLLLQAGVKMDIKVRMG-------AWSWDMDTGEELRVGAGLAEDYCITWCAVEYF 291
            SVVRLL+ AG       R G                                   +   
Sbjct: 59  PSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTC--------------------LRAL 98

Query: 292 ESSGAILHMLFQHISPNIL-HNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTE 350
             S A        +      ++G T +H A+       V+LLL    D +       ++ 
Sbjct: 99  LDSAAP-----GTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRS- 152

Query: 351 LRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLG 410
             P+  A    S  +++ L+  G N+N++  +G +A    +       ++ L   GAD  
Sbjct: 153 --PLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS 210

Query: 411 LINYAGQ 417
           L N    
Sbjct: 211 LKNCHND 217

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 72.5 bits (179), Expect = 2e-14
 Identities = 50/238 (21%), Positives = 86/238 (36%), Gaps = 59/238 (24%)

Query: 183 ALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVV 242
            L  A      +VV  L+  G    A+DR      + A H          A   R  + +
Sbjct: 49  PLHLAVITTLPSVVRLLVTAGASPMALDR----HGQTAAHL---------ACEHRSPTCL 95

Query: 243 RLLLQ--AGVKMDIKVRMGAWSWDMDTGEELRVGAGL------AEDYCITWCAVEYFESS 294
           R LL   A   +D++ R      + D         GL          C     V+     
Sbjct: 96  RALLDSAAPGTLDLEAR------NYD---------GLTALHVAVNTECQE--TVQLLLER 138

Query: 295 GAILHMLFQHISPNI----LHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYS-KT 349
           GA           +I    + +GR+ + HA+  N+   V+LLL    +     Q YS  +
Sbjct: 139 GA-----------DIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVN--AQMYSGSS 185

Query: 350 ELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGA 407
               +H A+  G   ++R L+ +G + + +    +T  M+    +  + L+  A+  A
Sbjct: 186 ---ALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 61.7 bits (151), Expect = 8e-11
 Identities = 59/300 (19%), Positives = 97/300 (32%), Gaps = 84/300 (28%)

Query: 91  TALFLAAHAGNLTLVRKLLSL----GANVNQKLFRGYATTA---AVREDHLEILDLLIKA 143
           T L +A   GNL  V +L++L    G  ++         T    AV      ++ LL+ A
Sbjct: 11  TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQ--TPLHLAVITTLPSVVRLLVTA 68

Query: 144 GACQEACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCG 203
           GA   A +         GQ                    A   AC       +  L+   
Sbjct: 69  GASPMALDR-------HGQT-------------------AAHLACEHRSPTCLRALLDSA 102

Query: 204 ----VDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMG 259
               +D  A +                  AL  AV +     V+LLL+ G  +D      
Sbjct: 103 APGTLDLEARN-------------YDGLTALHVAVNTECQETVQLLLERGADIDAV---- 145

Query: 260 AWSWDMDTGEELRVGAGLAEDYCIT--WCAVEYFESSGAILHMLFQH-ISPNIL-HNGRT 315
               D+ +G               +    AVE   +S +++ +L QH  + N   ++G +
Sbjct: 146 ----DIKSGR--------------SPLIHAVEN--NSLSMVQLLLQHGANVNAQMYSGSS 185

Query: 316 LIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCN 375
            +H A        V  L+    D       ++ T   P+ +A       ILR   +   +
Sbjct: 186 ALHSASGRGLLPLVRTLVRSGADSSLK-NCHNDT---PLMVARSRRVIDILRGKATRPAS 241

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  135 bits (343), Expect = 1e-35
 Identities = 48/320 (15%), Positives = 84/320 (26%), Gaps = 86/320 (26%)

Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
           +G +  ++AI  NN R V  LLN    K             P+H AA L   KI++ L+ 
Sbjct: 30  HGHSASYYAIADNNVRLVCTLLNAGALKN------LLENEFPLHQAATLEDTKIVKILLF 83

Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLG 431
           +G + +     G TA        + + +K    +   L              K+   T  
Sbjct: 84  SGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL----------MFYGKTGWKT-- 131

Query: 432 FQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAA 491
                                           NDV  +   +           A   S  
Sbjct: 132 ------------------------SFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCI 165

Query: 492 MIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKG 551
            I    GHV+   LLL    +    N                                  
Sbjct: 166 HITIKNGHVDMMILLLDYMTSTNTNNSLLFIP---------------------------- 197

Query: 552 SAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGA 611
                 +  A    D +++  L          D + Y+  +         + +++I    
Sbjct: 198 -----DIKLAIDNKDIEMLQALFKY-------DINIYSANLENVLLDDAEIAKMIIEKHV 245

Query: 612 KCDIENARNETALALARENG 631
             + ++      L + + N 
Sbjct: 246 --EYKSDSYTKDLDIVKNNK 263

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  123 bits (311), Expect = 2e-31
 Identities = 42/287 (14%), Positives = 87/287 (30%), Gaps = 58/287 (20%)

Query: 356 LAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYA 415
                  +K L+  +S   +       G +A+       +   +  L + GA     N  
Sbjct: 5   SRINTWKSKQLKSFLS-SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGAL---KN-- 58

Query: 416 GQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEW 475
                     +                             PL       D   +K L+  
Sbjct: 59  -------LLENE---------------------------FPLHQAATLEDTKIVKILLF- 83

Query: 476 ADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYG-ETAITLAELNRNGE 534
           + +D  + D  G +A   A  +G+++  +L +     +    K G +T+   A +  +  
Sbjct: 84  SGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVS 143

Query: 535 VLEQVILEYALEEG---QKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTP- 590
           +     + Y L E       +     +H   K G  D++  L+      N +++  + P 
Sbjct: 144 I-----VSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPD 198

Query: 591 LMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAE 637
           + LA  +    + Q L       +I      +A        +   A+
Sbjct: 199 IKLAIDNKDIEMLQALFKYDI--NI-----YSANLENVLLDDAEIAK 238

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 86.8 bits (216), Expect = 6e-19
 Identities = 24/292 (8%), Positives = 67/292 (22%), Gaps = 90/292 (30%)

Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTE--LRPIHLAARLGSAKILRRL 369
                +H A    + + V++LL   +D           +     ++ A   G+ + ++  
Sbjct: 61  ENEFPLHQAATLEDTKIVKILLFSGLDDS------QFDDKGNTALYYAVDSGNMQTVKLF 114

Query: 370 ISAGCNINSRTAAG-ETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRW 428
           +     +      G +T+            + +  SE              ++   +   
Sbjct: 115 VKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI------------PSTFDLAILL 162

Query: 429 TLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGF 488
           +                           +    +   VD +  L++      +  ++  F
Sbjct: 163 S--------------------------CIHITIKNGHVDMMILLLD-YMTSTNTNNSLLF 195

Query: 489 SAA-MIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEE 547
                +A     +E  + L     NI                                  
Sbjct: 196 IPDIKLAIDNKDIEMLQALFKYDINI---YS----------------------------- 223

Query: 548 GQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGH 599
                    A        D ++   ++ +  +  +        ++   K   
Sbjct: 224 ---------ANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDE 266

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 85.3 bits (212), Expect = 2e-18
 Identities = 49/334 (14%), Positives = 92/334 (27%), Gaps = 94/334 (28%)

Query: 95  LAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKAGACQEACE 151
              +      ++  LS   +  +    G+  +A   A+ ++++ ++  L+ AGA +   E
Sbjct: 5   SRINTWKSKQLKSFLS-SKDTFKADVHGH--SASYYAIADNNVRLVCTLLNAGALKNLLE 61

Query: 152 EALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDANAIDR 211
               E                           L  A       +V  L+  G+D +  D 
Sbjct: 62  N---EF-------------------------PLHQAATLEDTKIVKILLFSGLDDSQFD- 92

Query: 212 VLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMG--------AWSW 263
                       +    AL  AV S  +  V+L ++   ++    + G            
Sbjct: 93  ------------DKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLN 140

Query: 264 DMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILC 323
           D+                      V YF S                L    + IH  I  
Sbjct: 141 DVSI--------------------VSYFLSEIPS---------TFDLAILLSCIHITIKN 171

Query: 324 NNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAG 383
            +   + LLL+          +        I LA      ++L+ L     NI       
Sbjct: 172 GHVDMMILLLDYMTSTNTN-NSLLFIPD--IKLAIDNKDIEMLQALFKYDINIY------ 222

Query: 384 ETAAMICARYKHEECLKFLASEGADLGLINYAGQ 417
            +A +        E  K +  +  +    +Y   
Sbjct: 223 -SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKD 255

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 70.6 bits (174), Expect = 2e-13
 Identities = 40/317 (12%), Positives = 79/317 (24%), Gaps = 95/317 (29%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKAGACQ 147
           +A + A    N+ LV  LL+ GA  N              A   +  +I+ +L+ +G   
Sbjct: 33  SASYYAIADNNVRLVCTLLNAGALKNLL----ENEFPLHQAATLEDTKIVKILLFSGLDD 88

Query: 148 EACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDAN 207
              ++        G          T          AL  A   G +  V   +K      
Sbjct: 89  SQFDD-------KGN---------T----------ALYYAVDSGNMQTVKLFVKKNWRLM 122

Query: 208 AIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMG-------A 260
              +      K + +          AV+   +S+V   L         + +         
Sbjct: 123 FYGK---TGWKTSFYH---------AVMLNDVSIVSYFLSEIPS-TFDLAILLSCIHITI 169

Query: 261 WSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNIL-HNGRT-LIH 318
            +  +D                     +                 S N          I 
Sbjct: 170 KNGHVDM--------------------MILLLDYMT---------STNTNNSLLFIPDIK 200

Query: 319 HAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINS 378
            AI   +   ++ L    ++    + +              L  A+I + +I       S
Sbjct: 201 LAIDNKDIEMLQALFKYDIN----IYS-------ANLENVLLDDAEIAKMIIEKHVEYKS 249

Query: 379 RTAAGETAAMICARYKH 395
            +   +   +   +   
Sbjct: 250 DSYTKDLDIVKNNKLDE 266

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  130 bits (329), Expect = 2e-34
 Identities = 46/296 (15%), Positives = 83/296 (28%), Gaps = 81/296 (27%)

Query: 353 PIHLAARLGSAK----ILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGAD 408
            +HLA           ++R++      +N +    +T   +       E  + L   G D
Sbjct: 11  FLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD 70

Query: 409 LGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDA 468
             L ++ G                                      +PL    +   + +
Sbjct: 71  PELRDFRGN-------------------------------------TPLHLACEQGCLAS 93

Query: 469 LKKLIE-----WADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQ-NKYGET 522
           +  L +          L   + +G +   +A+  G++    LL+  GA++  Q    G T
Sbjct: 94  VGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRT 153

Query: 523 AITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNA 582
                                             ALH A    + DLV  L+    DVN 
Sbjct: 154 ----------------------------------ALHLAVDLQNPDLVSLLLKCGADVNR 179

Query: 583 SDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAEN 638
               GY+P  L        + Q L     +       +E   +   E+      E+
Sbjct: 180 VTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFTED 235

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 94.2 bits (235), Expect = 7e-22
 Identities = 37/262 (14%), Positives = 69/262 (26%), Gaps = 67/262 (25%)

Query: 288 VEYFESSGAILHMLFQHISPNIL-HNGRTLIHHAILCNNARAVELLLNC-----AVDKEF 341
           +   +   A L         N   +  +T +H A++ N     E LL         D   
Sbjct: 28  IRQVKGDLAFL---------NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDF-- 76

Query: 342 PVQTYSKTELRPIHLAARLGSAKILRRLISAGCN------INSRTAAGETAAMICARYKH 395
                  T   P+HLA   G    +  L  +         + +    G T   + + + +
Sbjct: 77  ----RGNT---PLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGY 129

Query: 396 EECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFS 455
              ++ L S GAD+          N+    +  T                          
Sbjct: 130 LGIVELLVSLGADV----------NAQEPCNGRT-------------------------- 153

Query: 456 PLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKL 515
            L       + D +  L++    D++     G+S   +          + L         
Sbjct: 154 ALHLAVDLQNPDLVSLLLK-CGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQ 212

Query: 516 QNKYGETAITLAELNRNGEVLE 537
                E   +    +   E  E
Sbjct: 213 MLPESEDEESYDTESEFTEFTE 234

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 84.5 bits (210), Expect = 1e-18
 Identities = 31/161 (19%), Positives = 44/161 (27%), Gaps = 44/161 (27%)

Query: 482 EQDADGFSAAMIAAAAGHVEAF----RLLLHAGANIKLQNKYGETAITLAELNRNGEVLE 537
           +   DG S   +A             R +    A +  QN   +T               
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQT--------------- 47

Query: 538 QVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKS 597
                               LH A      ++   L+    D    D  G TPL LA + 
Sbjct: 48  -------------------PLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQ 88

Query: 598 GHGSVCQLLISSGAKCDIE---NARN---ETALALARENGN 632
           G  +   +L  S     +     A N    T L LA  +G 
Sbjct: 89  GCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGY 129

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 80.3 bits (199), Expect = 4e-17
 Identities = 38/238 (15%), Positives = 72/238 (30%), Gaps = 45/238 (18%)

Query: 193 VNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKM 252
           + V+  +       N  +       +  LH          AV++ Q  +   LL AG   
Sbjct: 25  MEVIRQVKGDLAFLNFQNN----LQQTPLHL---------AVITNQPEIAEALLGAGCDP 71

Query: 253 DIKVRMG-------AWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHI 305
           +++   G            + +                    V     S    H+     
Sbjct: 72  ELRDFRGNTPLHLACEQGCLAS--------------------VGVLTQSCTTPHLHSILK 111

Query: 306 SPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKI 365
           + N  +NG T +H A +      VELL++   D         +T    +HLA  L +  +
Sbjct: 112 ATN--YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRT---ALHLAVDLQNPDL 166

Query: 366 LRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIA 423
           +  L+  G ++N  T  G +   +          + L     +   +    +   S  
Sbjct: 167 VSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYD 224

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 67.6 bits (166), Expect = 1e-12
 Identities = 37/168 (22%), Positives = 59/168 (35%), Gaps = 37/168 (22%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKAGACQ 147
           T L LA       +   LL  G +   + FRG   T    A  +  L  + +L ++    
Sbjct: 47  TPLHLAVITNQPEIAEALLGAGCDPELRDFRGN--TPLHLACEQGCLASVGVLTQSCT-T 103

Query: 148 EACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDAN 207
                 L  T+Y G                      L  A   G++ +V+ L+  G D N
Sbjct: 104 PHLHSILKATNYNGHT-------------------CLHLASIHGYLGIVELLVSLGADVN 144

Query: 208 AIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIK 255
           A +     + + ALH          AV  +   +V LLL+ G  ++  
Sbjct: 145 AQEP---CNGRTALHL---------AVDLQNPDLVSLLLKCGADVNRV 180

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 55.2 bits (134), Expect = 1e-08
 Identities = 32/174 (18%), Positives = 47/174 (27%), Gaps = 49/174 (28%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGAN------VNQKLFRGYATTA---AVREDHLEILDLLI 141
           T L LA   G L  V  L            +    + G+  T    A    +L I++LL+
Sbjct: 80  TPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGH--TCLHLASIHGYLGIVELLV 137

Query: 142 KAGACQEACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIK 201
             GA   A E     T                         AL  A      ++V  L+K
Sbjct: 138 SLGADVNAQEPCNGRT-------------------------ALHLAVDLQNPDLVSLLLK 172

Query: 202 CGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIK 255
           CG D N +                               + + L Q  ++    
Sbjct: 173 CGADVNRVTY----QGYSPYQL---------TWGRPSTRIQQQLGQLTLENLQM 213

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 54.5 bits (132), Expect = 2e-08
 Identities = 28/125 (22%), Positives = 45/125 (36%), Gaps = 32/125 (25%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQK-LFRGYATTA---AVREDHLEILDLLIKAGAC 146
           T L LA+  G L +V  L+SLGA+VN +    G   TA   AV   + +++ LL+K GA 
Sbjct: 119 TCLHLASIHGYLGIVELLVSLGADVNAQEPCNGR--TALHLAVDLQNPDLVSLLLKCGAD 176

Query: 147 QEACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDA 206
                      +Y G          +                 R    +   L +  ++ 
Sbjct: 177 VNR-------VTYQGY---------S----------PYQLTWGRPSTRIQQQLGQLTLEN 210

Query: 207 NAIDR 211
             +  
Sbjct: 211 LQMLP 215

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  129 bits (328), Expect = 2e-34
 Identities = 52/282 (18%), Positives = 90/282 (31%), Gaps = 72/282 (25%)

Query: 353 PIHLAARLGSAKILRR-LISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGL 411
           P+H A        ++  L S    +  +   G         ++  E   FL S+  +   
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN--- 61

Query: 412 INYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKK 471
           +N      +S      WT                          P        +++ +K 
Sbjct: 62  VNLDDYPDDS-----GWT--------------------------PFHIACSVGNLEVVKS 90

Query: 472 LIE-WADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELN 530
           L +     DL++    G +   +A      E  + L+  GA++++++K+ +         
Sbjct: 91  LYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIP------- 143

Query: 531 RNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCY-DVNASDADGYT 589
                                      LHRAA  G   L+  L       VN  D  G+T
Sbjct: 144 ---------------------------LHRAASVGSLKLIELLCGLGKSAVNWQDKQGWT 176

Query: 590 PLMLAAKSGHGSVCQLLISS-GAKCDIENARNETALALAREN 630
           PL  A   GHG    LL+   GA+ D+ + +   A  +A   
Sbjct: 177 PLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE 218

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  109 bits (276), Expect = 3e-27
 Identities = 43/191 (22%), Positives = 72/191 (37%), Gaps = 13/191 (6%)

Query: 456 PLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKL 515
           PL      N+   +++L+      L ++D DG      + +    E    LL    N+ L
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64

Query: 516 QN---KYGETAITLAELNRNGEVLEQVILEYA---LEEGQKGSAGFYALHRAAKRGDFDL 569
            +     G T   +A    N EV++ +        L +    + G   LH A  +  F++
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNK--ITNQGVTCLHLAVGKKWFEV 122

Query: 570 VHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNE---TALAL 626
              L+     V   D     PL  AA  G   + +LL   G    + N +++   T L  
Sbjct: 123 SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGK-SAV-NWQDKQGWTPLFH 180

Query: 627 ARENGNGNEAE 637
           A   G+G+ A 
Sbjct: 181 ALAEGHGDAAV 191

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 92.9 bits (232), Expect = 2e-21
 Identities = 43/255 (16%), Positives = 78/255 (30%), Gaps = 55/255 (21%)

Query: 288 VEYFESSGAILHMLFQHISPNIL-HNGRTLIHHAILCNNARAVELLLN--CAVDKEFPVQ 344
            E   S  +                +GR  +H ++          LL+    V+ +    
Sbjct: 19  QELLHSKPS---------LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPD 69

Query: 345 TYSKTELRPIHLAARLGSAKILRRLIS--AGCNINSRTAAGETAAMICARYKHEECLKFL 402
               T   P H+A  +G+ ++++ L       ++N  T  G T   +    K  E  +FL
Sbjct: 70  DSGWT---PFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFL 126

Query: 403 ASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQ 462
              GA + + +                                          PL     
Sbjct: 127 IENGASVRIKDKFN-----------QI--------------------------PLHRAAS 149

Query: 463 ANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLL-HAGANIKLQNKYGE 521
              +  ++ L       ++ QD  G++    A A GH +A  LL+   GA   L +  G 
Sbjct: 150 VGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGA 209

Query: 522 TAITLAELNRNGEVL 536
            A  +A   +  +  
Sbjct: 210 KAEDVALNEQVKKFF 224

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 71.7 bits (177), Expect = 3e-14
 Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 4/83 (4%)

Query: 554 GFYALHRAAKRGDFDLVHT-LVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAK 612
             Y LH+A    +F  V   L S+   +   D DG  PL  +       +   L+S    
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61

Query: 613 CDIENARNE---TALALARENGN 632
            ++++  ++   T   +A   GN
Sbjct: 62  VNLDDYPDDSGWTPFHIACSVGN 84

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 67.1 bits (165), Expect = 1e-12
 Identities = 30/197 (15%), Positives = 55/197 (27%), Gaps = 43/197 (21%)

Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYS-KTELRPIHLAARLGSAKILRRLI 370
           +G T  H A    N   V+ L +  +  +    T    T    +HLA      ++ + LI
Sbjct: 71  SGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVT---CLHLAVGKKWFEVSQFLI 127

Query: 371 SAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTL 430
             G ++  +    +      A     + ++ L   G                        
Sbjct: 128 ENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGK----------------------- 164

Query: 431 GFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSA 490
                        + +   +   ++PL         DA   L+E    + D  D  G  A
Sbjct: 165 -------------SAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKA 211

Query: 491 AMIAAAAGHVEAFRLLL 507
             +A      +     L
Sbjct: 212 EDVALNEQVKK---FFL 225

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 58.2 bits (142), Expect = 1e-09
 Identities = 28/178 (15%), Positives = 51/178 (28%), Gaps = 37/178 (20%)

Query: 91  TALFLAAHAGNLTLVRKLL-SLGANVNQKLFRGYATTA---AVREDHLEILDLLIKAGA- 145
             L  A        V++LL S  + + QK   G        +V     EI   L+     
Sbjct: 4   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGR--IPLHWSVSFQAHEITSFLLSKMEN 61

Query: 146 --CQEACEE----ALLETSYLGQARPAELLMATDLIRPQVSVH--------ALVSACFRG 191
               +  ++           +G     + L        +  ++         L  A  + 
Sbjct: 62  VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP---LKPDLNKITNQGVTCLHLAVGKK 118

Query: 192 FVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAG 249
           +  V   LI+ G      D+     ++  LH          A     + ++ LL   G
Sbjct: 119 WFEVSQFLIENGASVRIKDK----FNQIPLHR---------AASVGSLKLIELLCGLG 163

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 51.7 bits (125), Expect = 2e-07
 Identities = 34/237 (14%), Positives = 58/237 (24%), Gaps = 68/237 (28%)

Query: 183 ALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVV 242
            L  +       +   L+    + N  D     S     H          A     + VV
Sbjct: 39  PLHWSVSFQAHEITSFLLSKMENVNLDDYPD-DSGWTPFHI---------ACSVGNLEVV 88

Query: 243 RLLLQAGVKMDIKVR---------MGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFES 293
           + L    +K D+            +       +                      ++   
Sbjct: 89  KSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV--------------------SQFLIE 128

Query: 294 SGAILHMLFQHISPNIL-HNGRTLIHHAILCNNARAVELLLNC------AVDKEFPVQTY 346
           +GA         S  I     +  +H A    + + +ELL           DK       
Sbjct: 129 NGA---------SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK------Q 173

Query: 347 SKTELRPIHLAARLGSAKILRRLISA-GCNINSRTAAGETAAMICARYKHEECLKFL 402
             T   P+  A   G       L+   G   +     G  A  +     +E+  KF 
Sbjct: 174 GWT---PLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFF 224

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 50.5 bits (122), Expect = 4e-07
 Identities = 30/143 (20%), Positives = 51/143 (35%), Gaps = 34/143 (23%)

Query: 91  TALFLAAHAGNLTLVRKLLS--LGANVNQKLFRGYATTA---AVREDHLEILDLLIKAGA 145
           T   +A   GNL +V+ L    L  ++N+   +G   T    AV +   E+   LI+ GA
Sbjct: 74  TPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV--TCLHLAVGKKWFEVSQFLIENGA 131

Query: 146 CQEACEE----ALLETSYLGQARPAELLMATDLIRPQVSVH-------------ALVSAC 188
                ++     L   + +G  +  ELL           +               L  A 
Sbjct: 132 SVRIKDKFNQIPLHRAASVGSLKLIELL---------CGLGKSAVNWQDKQGWTPLFHAL 182

Query: 189 FRGFVNVVDTLI-KCGVDANAID 210
             G  +    L+ K G + + +D
Sbjct: 183 AEGHGDAAVLLVEKYGAEYDLVD 205

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  129 bits (327), Expect = 7e-34
 Identities = 50/306 (16%), Positives = 88/306 (28%), Gaps = 76/306 (24%)

Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
            G    +     +    +   +              +T    +HLAAR   +   +RL+ 
Sbjct: 22  GGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGET---ALHLAARYSRSDAAKRLLE 78

Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLG 431
           A  + N +   G T          +   + L    A                        
Sbjct: 79  ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT----------------------- 115

Query: 432 FQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAA 491
                         + +      +PL+   +      L+ LI  +  D++  D  G SA 
Sbjct: 116 -------------DLDARMHDGTTPLILAARLAVEGMLEDLIN-SHADVNAVDDLGKSAL 161

Query: 492 MIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKG 551
             AAA  +V+A  +LL  GAN  +QN   ET                             
Sbjct: 162 HWAAAVNNVDAAVVLLKNGANKDMQNNREETP---------------------------- 193

Query: 552 SAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGA 611
                 L  AA+ G ++    L+    + + +D     P  +A +  H  + +LL     
Sbjct: 194 ------LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHH 247

Query: 612 KCDIEN 617
                +
Sbjct: 248 --HHHH 251

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  125 bits (316), Expect = 2e-32
 Identities = 51/281 (18%), Positives = 89/281 (31%), Gaps = 72/281 (25%)

Query: 353 PIHLAARLGSAKILRRLISAGCNI-NSRTAAGETAAMICARYKHEECLKFLASEGADLGL 411
             +      +  ++   I  G ++ N     GETA  + ARY   +  K L    AD  +
Sbjct: 26  TGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANI 85

Query: 412 INYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKK 471
            +  G            T                          PL     A+     + 
Sbjct: 86  QDNMG-----------RT--------------------------PLHAAVSADAQGVFQI 108

Query: 472 LIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNR 531
           LI     DLD +  DG +  ++AA          L+++ A++   +  G++A        
Sbjct: 109 LIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSA-------- 160

Query: 532 NGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPL 591
                                     LH AA   + D    L+    + +  +    TPL
Sbjct: 161 --------------------------LHWAAAVNNVDAAVVLLKNGANKDMQNNREETPL 194

Query: 592 MLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGN 632
            LAA+ G     ++L+   A  DI +  +     +A+E  +
Sbjct: 195 FLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH 235

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  107 bits (270), Expect = 2e-26
 Identities = 53/260 (20%), Positives = 90/260 (34%), Gaps = 61/260 (23%)

Query: 375 NINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQ 434
           ++N R   G T  MI +             E     +I+                     
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISD---------------F---- 42

Query: 435 AVVDSIRSG-NIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMI 493
                I  G ++   ++ +  + L    + +  DA K+L+E A  D + QD  G +    
Sbjct: 43  -----IYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE-ASADANIQDNMGRTPLHA 96

Query: 494 AAAAGHVEAFRLLLHAGA-NIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGS 552
           A +A     F++L+   A ++  +   G T                              
Sbjct: 97  AVSADAQGVFQILIRNRATDLDARMHDGTT------------------------------ 126

Query: 553 AGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAK 612
                L  AA+     ++  L++   DVNA D  G + L  AA   +     +L+ +GA 
Sbjct: 127 ----PLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 182

Query: 613 CDIENARNETALALARENGN 632
            D++N R ET L LA   G+
Sbjct: 183 KDMQNNREETPLFLAAREGS 202

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  104 bits (262), Expect = 3e-25
 Identities = 47/262 (17%), Positives = 91/262 (34%), Gaps = 58/262 (22%)

Query: 288 VEYFESSGAILHMLFQHISPNIL----HNGRTLIHHAILCNNARAVELLLNCAVDKEFPV 343
           +  F   GA           ++       G T +H A   + + A + LL  + D     
Sbjct: 39  ISDFIYQGA-----------SLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ- 86

Query: 344 QTYSKTELRPIHLAARLGSAKILRRLISAG-CNINSRTAAGETAAMICARYKHEECLKFL 402
                    P+H A    +  + + LI     ++++R   G T  ++ AR   E  L+ L
Sbjct: 87  ---DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDL 143

Query: 403 ASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQ 462
            +  AD+  ++  G+                                     S L +   
Sbjct: 144 INSHADVNAVDDLGK-------------------------------------SALHWAAA 166

Query: 463 ANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGET 522
            N+VDA   L++    + D Q+    +   +AA  G  E  ++LL   AN  + +     
Sbjct: 167 VNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRL 225

Query: 523 AITLAELNRNGEVLEQVILEYA 544
              +A+   + +++  + LE+ 
Sbjct: 226 PRDIAQERMHHDIVRLLDLEHH 247

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 88.3 bits (220), Expect = 1e-19
 Identities = 40/172 (23%), Positives = 60/172 (34%), Gaps = 53/172 (30%)

Query: 478 VDLDEQDADGFSAAMIAAAAG-------------HVEAFRLLLHAGANIK-LQNKYGETA 523
           +D++ +  DGF+  MIA+ +G                     ++ GA++    ++ GET 
Sbjct: 1   MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGET- 59

Query: 524 ITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNAS 583
                                            ALH AA+    D    L+    D N  
Sbjct: 60  ---------------------------------ALHLAARYSRSDAAKRLLEASADANIQ 86

Query: 584 DADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNE---TALALARENGN 632
           D  G TPL  A  +    V Q+LI + A  D+ +AR     T L LA     
Sbjct: 87  DNMGRTPLHAAVSADAQGVFQILIRNRAT-DL-DARMHDGTTPLILAARLAV 136

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 84.4 bits (210), Expect = 2e-18
 Identities = 39/209 (18%), Positives = 69/209 (33%), Gaps = 47/209 (22%)

Query: 312 NGRTLIHHAILCNNARAVELLL-NCAVDKEFPVQTYSKTELR--PIHLAARLGSAKILRR 368
            GRT +H A+  +     ++L+ N A D +      ++      P+ LAARL    +L  
Sbjct: 89  MGRTPLHAAVSADAQGVFQILIRNRATDLD------ARMHDGTTPLILAARLAVEGMLED 142

Query: 369 LISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRW 428
           LI++  ++N+    G++A    A   + +    L   GA+  + N               
Sbjct: 143 LINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE-----------E 191

Query: 429 TLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGF 488
           T                          PL    +    +  K L++    + D  D    
Sbjct: 192 T--------------------------PLFLAAREGSYETAKVLLD-HFANRDITDHMDR 224

Query: 489 SAAMIAAAAGHVEAFRLLLHAGANIKLQN 517
               IA    H +  RLL     +    +
Sbjct: 225 LPRDIAQERMHHDIVRLLDLEHHHHHHHH 253

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 75.2 bits (186), Expect = 3e-15
 Identities = 57/328 (17%), Positives = 96/328 (29%), Gaps = 101/328 (30%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTAAVREDHLEILDLLIKAGACQEAC 150
           T L +A+ +G                          +   ED   ++   I  GA     
Sbjct: 12  TPLMIASCSGGGL-------------------ETGNSEEEEDAPAVISDFIYQGASLHN- 51

Query: 151 EEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDANAID 210
                +T   G+                    AL  A      +    L++   DAN  D
Sbjct: 52  -----QTDRTGET-------------------ALHLAARYSRSDAAKRLLEASADANIQD 87

Query: 211 RVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAG-VKMDIKVRMG-------AWS 262
                  +  LHA         AV +    V ++L++     +D ++  G       A  
Sbjct: 88  N----MGRTPLHA---------AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL 134

Query: 263 WDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNIL-HNGRTLIHHAI 321
                                    +E   +S A           N +   G++ +H A 
Sbjct: 135 AVEGM--------------------LEDLINSHA---------DVNAVDDLGKSALHWAA 165

Query: 322 LCNNARAVELLLNCAVDKEFPVQT-YSKTELRPIHLAARLGSAKILRRLISAGCNINSRT 380
             NN  A  +LL    +K+  +Q    +T   P+ LAAR GS +  + L+    N +   
Sbjct: 166 AVNNVDAAVVLLKNGANKD--MQNNREET---PLFLAAREGSYETAKVLLDHFANRDITD 220

Query: 381 AAGETAAMICARYKHEECLKFLASEGAD 408
                   I     H + ++ L  E   
Sbjct: 221 HMDRLPRDIAQERMHHDIVRLLDLEHHH 248

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 57.5 bits (140), Expect = 3e-09
 Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 18/75 (24%)

Query: 579 DVNASDADGYTPLMLAAKSGHG-------------SVCQLLISSGAKCDIENARN---ET 622
           DVN    DG+TPLM+A+ SG G             +V    I  GA   + N  +   ET
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGA--SLHNQTDRTGET 59

Query: 623 ALALARENGNGNEAE 637
           AL LA      + A+
Sbjct: 60  ALHLAARYSRSDAAK 74

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 49.8 bits (120), Expect = 9e-07
 Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 5/62 (8%)

Query: 87  KTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKA 143
             E T LFLAA  G+    + LL   AN +              A    H +I+ LL   
Sbjct: 188 NREETPLFLAAREGSYETAKVLLDHFANRDITDHMDR--LPRDIAQERMHHDIVRLLDLE 245

Query: 144 GA 145
             
Sbjct: 246 HH 247

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  125 bits (316), Expect = 9e-33
 Identities = 39/256 (15%), Positives = 74/256 (28%), Gaps = 45/256 (17%)

Query: 377 NSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAV 436
                 G+                 L  E  D+  I            S   T       
Sbjct: 6   PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTG------ 59

Query: 437 VDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAA 496
              +   N +     S  +PL    +  ++  L++ ++   V ++  D  G +A   A  
Sbjct: 60  ---LIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLD-NRVGVNGLDKAGSTALYWACH 115

Query: 497 AGHVEAFRLLL-HAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGF 555
            GH +   +L       +  QNK G+T                                 
Sbjct: 116 GGHKDIVEMLFTQPNIELNQQNKLGDT--------------------------------- 142

Query: 556 YALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDI 615
            ALH AA +G  D+V  L+++    +  + +      +A  +   S+ +    + A   +
Sbjct: 143 -ALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTL 201

Query: 616 ENARNETALALARENG 631
            NA +      +    
Sbjct: 202 SNAEDYLDDEDSDLEH 217

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  113 bits (284), Expect = 2e-28
 Identities = 38/217 (17%), Positives = 70/217 (32%), Gaps = 16/217 (7%)

Query: 456 PLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKL 515
            +       +     +L    + D+        +      + G        L     +  
Sbjct: 15  KVFRALYTFEPRTPDELYI-EEGDIIYITDMSDTNWWKGTSKGR-----TGLIPSNYVAE 68

Query: 516 QNKYGETAITLAELNRNGEVLEQVILEYALEEG----QKGSAGFYALHRAAKRGDFDLVH 571
           Q +  +  +  A    N   L        L+          AG  AL+ A   G  D+V 
Sbjct: 69  QAESIDNPLHEAAKRGNLSWLR-----ECLDNRVGVNGLDKAGSTALYWACHGGHKDIVE 123

Query: 572 TLVSRC-YDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALAREN 630
            L ++   ++N  +  G T L  AA  G+  + QLL++ GA+ D+ N   + A  +A   
Sbjct: 124 MLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNA 183

Query: 631 GNGNEAENVILDELALTLVLDGTYVKKHTKCGKGSPH 667
              +  +     +   TL     Y+       +   H
Sbjct: 184 ACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHHH 220

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  109 bits (275), Expect = 2e-27
 Identities = 38/288 (13%), Positives = 73/288 (25%), Gaps = 80/288 (27%)

Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
            G+  +  A+     R  + L     D  + +   S T           G   ++     
Sbjct: 11  PGQVKVFRALYTFEPRTPDELYIEEGDIIY-ITDMSDT---NWWKGTSKGRTGLIPSNYV 66

Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLG 431
           A    +      +      A+  +   L+        +  ++ AG            T  
Sbjct: 67  AEQAES-----IDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAG-----------ST-- 108

Query: 432 FQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAA 491
                                    L +       D ++ L    +++L++Q+  G +A 
Sbjct: 109 ------------------------ALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTAL 144

Query: 492 MIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKG 551
             AA  G+ +  +LLL  GA   L+N   +                              
Sbjct: 145 HAAAWKGYADIVQLLLAKGARTDLRNIEKKL----------------------------- 175

Query: 552 SAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGH 599
                A   A       L+            S+A+ Y     +    H
Sbjct: 176 -----AFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHH 218

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 99.6 bits (249), Expect = 7e-24
 Identities = 28/154 (18%), Positives = 48/154 (31%), Gaps = 7/154 (4%)

Query: 480 LDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQV 539
             +    G      A           L     +I       +T            ++   
Sbjct: 5   PPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIP-- 62

Query: 540 ILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGH 599
               +    ++  +    LH AAKRG+   +   +     VN  D  G T L  A   GH
Sbjct: 63  ----SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGH 118

Query: 600 GSVCQLLIS-SGAKCDIENARNETALALARENGN 632
             + ++L +    + + +N   +TAL  A   G 
Sbjct: 119 KDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGY 152

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 65.0 bits (159), Expect = 6e-12
 Identities = 34/249 (13%), Positives = 55/249 (22%), Gaps = 70/249 (28%)

Query: 183 ALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVV 242
            +  A +       D L     D   I       S                         
Sbjct: 15  KVFRALYTFEPRTPDELYIEEGDIIYIT----DMSDTNWWKGTSKG-------------- 56

Query: 243 RLLLQAGVKMDIKVRMG-------AWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSG 295
           R  L     +  +           A   ++                      +     + 
Sbjct: 57  RTGLIPSNYVAEQAESIDNPLHEAAKRGNLSW--------------------LRECLDNR 96

Query: 296 AILHMLFQHISPNIL-HNGRTLIHHAILCNNARAVELLLNC------AVDKEFPVQTYSK 348
                       N L   G T ++ A    +   VE+L           +K         
Sbjct: 97  V---------GVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNK------LGD 141

Query: 349 TELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGAD 408
           T    +H AA  G A I++ L++ G   + R    + A  +         LK      A 
Sbjct: 142 T---ALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAV 198

Query: 409 LGLINYAGQ 417
             L N    
Sbjct: 199 RTLSNAEDY 207

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 56.1 bits (136), Expect = 5e-09
 Identities = 37/232 (15%), Positives = 72/232 (31%), Gaps = 52/232 (22%)

Query: 31  LVDAAHVNDVKRANECI---GDPFVDVNFVGTVSLRAKKTELVLHDEAAHEVRVVYEEFK 87
           +  A +  + +  +E     GD     +   T   +           + +    V E+ +
Sbjct: 16  VFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNY----VAEQAE 71

Query: 88  TEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLI-KA 143
           +    L  AA  GNL+ +R+ L     VN     G   TA   A    H +I+++L  + 
Sbjct: 72  SIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGS--TALYWACHGGHKDIVEMLFTQP 129

Query: 144 GACQEACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCG 203
                         + LG          T          AL +A ++G+ ++V  L+  G
Sbjct: 130 NIELNQ-------QNKLGD---------T----------ALHAAAWKGYADIVQLLLAKG 163

Query: 204 VDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIK 255
              +  +                  A   A  +   S+++          + 
Sbjct: 164 ARTDLRN-------------IEKKLAFDMATNAACASLLKKKQGTDAVRTLS 202

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  123 bits (311), Expect = 5e-32
 Identities = 49/288 (17%), Positives = 85/288 (29%), Gaps = 74/288 (25%)

Query: 324 NNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAG 383
           +    +   +              +T    +HLAAR   +   +RL+ A  + N +   G
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGET---ALHLAARYSRSDAAKRLLEASADANIQDNMG 58

Query: 384 ETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSG 443
            T          +   + L    A                                    
Sbjct: 59  RTPLHAAVSADAQGVFQILIRNRAT----------------------------------- 83

Query: 444 NIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAF 503
             + +      +PL+   +      L+ LI  +  D++  D  G SA   AAA  +V+A 
Sbjct: 84  -DLDARMHDGTTPLILAARLAVEGMLEDLIN-SHADVNAVDDLGKSALHWAAAVNNVDAA 141

Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
            +LL  GAN  +QN   ET                                   L  AA+
Sbjct: 142 VVLLKNGANKDMQNNREET----------------------------------PLFLAAR 167

Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGA 611
            G ++    L+    + + +D     P  +A +  H  + +LL     
Sbjct: 168 EGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNL 215

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  114 bits (288), Expect = 6e-29
 Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 1/157 (0%)

Query: 476 ADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEV 535
           A +  ++ D  G +A  +AA     +A + LL A A+  +Q+  G T +  A       V
Sbjct: 15  ASLH-NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGV 73

Query: 536 LEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAA 595
            + +I   A +   +   G   L  AA+     ++  L++   DVNA D  G + L  AA
Sbjct: 74  FQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAA 133

Query: 596 KSGHGSVCQLLISSGAKCDIENARNETALALARENGN 632
              +     +L+ +GA  D++N R ET L LA   G+
Sbjct: 134 AVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGS 170

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 99.0 bits (248), Expect = 1e-23
 Identities = 47/260 (18%), Positives = 87/260 (33%), Gaps = 68/260 (26%)

Query: 288 VEYFESSGAILHMLFQHISPNIL----HNGRTLIHHAILCNNARAVELLLNC-----AVD 338
           +  F   GA           ++       G T +H A   + + A + LL         D
Sbjct: 7   ISDFIYQGA-----------SLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQD 55

Query: 339 KEFPVQTYSKTELRPIHLAARLGSAKILRRLISAG-CNINSRTAAGETAAMICARYKHEE 397
                    +T   P+H A    +  + + LI     ++++R   G T  ++ AR   E 
Sbjct: 56  N------MGRT---PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEG 106

Query: 398 CLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPL 457
            L+ L +  AD   +N         A                          +    S L
Sbjct: 107 MLEDLINSHAD---VN---------AV-------------------------DDLGKSAL 129

Query: 458 MFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQN 517
            +    N+VDA   L++    + D Q+    +   +AA  G  E  ++LL   AN  + +
Sbjct: 130 HWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD 188

Query: 518 KYGETAITLAELNRNGEVLE 537
                   +A+   + +++ 
Sbjct: 189 HMDRLPRDIAQERMHHDIVR 208

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 80.1 bits (199), Expect = 3e-17
 Identities = 38/206 (18%), Positives = 68/206 (33%), Gaps = 47/206 (22%)

Query: 312 NGRTLIHHAILCNNARAVELLL-NCAVDKEFPVQTYSKTELR--PIHLAARLGSAKILRR 368
            GRT +H A+  +     ++L+ N A D +      ++      P+ LAARL    +L  
Sbjct: 57  MGRTPLHAAVSADAQGVFQILIRNRATDLD------ARMHDGTTPLILAARLAVEGMLED 110

Query: 369 LISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRW 428
           LI++  ++N+    G++A    A   + +    L   GA+    +          +    
Sbjct: 111 LINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN---KD---------MQ---- 154

Query: 429 TLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGF 488
                                N    +PL    +    +  K L++    + D  D    
Sbjct: 155 ---------------------NNREETPLFLAAREGSYETAKVLLD-HFANRDITDHMDR 192

Query: 489 SAAMIAAAAGHVEAFRLLLHAGANIK 514
               IA    H +  RLL        
Sbjct: 193 LPRDIAQERMHHDIVRLLDEYNLVRS 218

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 78.6 bits (195), Expect = 1e-16
 Identities = 32/140 (22%), Positives = 45/140 (32%), Gaps = 40/140 (28%)

Query: 497 AGHVEAFRLLLHAGANIK-LQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGF 555
                     ++ GA++    ++ GET                                 
Sbjct: 1   GDAPAVISDFIYQGASLHNQTDRTGET--------------------------------- 27

Query: 556 YALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDI 615
            ALH AA+    D    L+    D N  D  G TPL  A  +    V Q+LI + A  D+
Sbjct: 28  -ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT-DL 85

Query: 616 ENARNE---TALALARENGN 632
            +AR     T L LA     
Sbjct: 86  -DARMHDGTTPLILAARLAV 104

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 67.4 bits (166), Expect = 9e-13
 Identities = 43/240 (17%), Positives = 72/240 (30%), Gaps = 65/240 (27%)

Query: 183 ALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVV 242
           AL  A      +    L++   DAN  D       +  LHA         AV +    V 
Sbjct: 28  ALHLAARYSRSDAAKRLLEASADANIQDN----MGRTPLHA---------AVSADAQGVF 74

Query: 243 RLLLQAG-VKMDIKVRMG-------AWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESS 294
           ++L++     +D ++  G       A                           +E   +S
Sbjct: 75  QILIRNRATDLDARMHDGTTPLILAARLAVEGM--------------------LEDLINS 114

Query: 295 GAILHMLFQHISPNIL-HNGRTLIHHAILCNNARAVELLLNC-----AVDKEFPVQTYSK 348
            A           N +   G++ +H A   NN  A  +LL         +         +
Sbjct: 115 HA---------DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN------REE 159

Query: 349 TELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGAD 408
           T   P+ LAAR GS +  + L+    N +           I     H + ++ L      
Sbjct: 160 T---PLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLV 216

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 57.0 bits (139), Expect = 3e-09
 Identities = 39/189 (20%), Positives = 59/189 (31%), Gaps = 44/189 (23%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKAGACQ 147
           TAL LAA        ++LL   A+ N +   G   T    AV  D   +  +LI+  A  
Sbjct: 27  TALHLAARYSRSDAAKRLLEASADANIQDNMGR--TPLHAAVSADAQGVFQILIRNRATD 84

Query: 148 -EACEE----ALLETSYLGQARPAELLMATDLIRPQVSVHA------------LVSACFR 190
            +A        L+  + L      E L         ++ HA            L  A   
Sbjct: 85  LDARMHDGTTPLILAARLAVEGMLEDL---------INSHADVNAVDDLGKSALHWAAAV 135

Query: 191 GFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGV 250
             V+    L+K G + +  +             N +   L  A         ++LL    
Sbjct: 136 NNVDAAVVLLKNGANKDMQN-------------NREETPLFLAAREGSYETAKVLLDHFA 182

Query: 251 KMDIKVRMG 259
             DI   M 
Sbjct: 183 NRDITDHMD 191

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 50.9 bits (123), Expect = 3e-07
 Identities = 26/162 (16%), Positives = 48/162 (29%), Gaps = 44/162 (27%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKAGACQ 147
           T L LAA      ++  L++  A+VN     G   +A   A   ++++   +L+K GA +
Sbjct: 94  TPLILAARLAVEGMLEDLINSHADVNAVDDLGK--SALHWAAAVNNVDAAVVLLKNGANK 151

Query: 148 EACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDAN 207
           +         +   +                     L  A   G       L+    + +
Sbjct: 152 D-------MQNNREET-------------------PLFLAAREGSYETAKVLLDHFANRD 185

Query: 208 AIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAG 249
             D       +              A       +VRLL +  
Sbjct: 186 ITDH----MDRLPRDI---------AQERMHHDIVRLLDEYN 214

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 50.5 bits (122), Expect = 4e-07
 Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 5/58 (8%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKAGA 145
           T LFLAA  G+    + LL   AN +              A    H +I+ LL +   
Sbjct: 160 TPLFLAAREGSYETAKVLLDHFANRDITDHMDR--LPRDIAQERMHHDIVRLLDEYNL 215

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 45.5 bits (109), Expect = 2e-05
 Identities = 34/176 (19%), Positives = 57/176 (32%), Gaps = 41/176 (23%)

Query: 99  AGNLTLVRKLLSLGANV-NQKLFRGYATTA---AVREDHLEILDLLIKAGACQEACEE-- 152
                ++   +  GA++ NQ    G   TA   A R    +    L++A A     +   
Sbjct: 1   GDAPAVISDFIYQGASLHNQTDRTGE--TALHLAARYSRSDAAKRLLEASADANIQDNMG 58

Query: 153 --ALLETSYLGQARPAELLM---ATDLIRPQVSVH--------ALVSACFRGFVNVVDTL 199
              L            ++L+   ATD       +          L+ A       +++ L
Sbjct: 59  RTPLHAAVSADAQGVFQILIRNRATD-------LDARMHDGTTPLILAARLAVEGMLEDL 111

Query: 200 IKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIK 255
           I    D NA+D       K ALH          A     +    +LL+ G   D++
Sbjct: 112 INSHADVNAVD----DLGKSALHW---------AAAVNNVDAAVVLLKNGANKDMQ 154

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  121 bits (307), Expect = 9e-32
 Identities = 44/184 (23%), Positives = 78/184 (42%), Gaps = 7/184 (3%)

Query: 455 SPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIK 514
           + L    Q +     + L +     +DE D +G +   IA     +E  + L+  GA+I 
Sbjct: 8   ALLEAANQRDTKKVKEILQD-TTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN 66

Query: 515 LQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLV 574
           LQN   ++    A      E+L  ++     +  +    G  AL  AA++G  D V  L+
Sbjct: 67  LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLL 126

Query: 575 SR-CYDVNASDADGYTPLMLAA-----KSGHGSVCQLLISSGAKCDIENARNETALALAR 628
                D++  +  GYT L+ A         +  + +LL+ +GA   I++    TA+  A 
Sbjct: 127 EDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYAN 186

Query: 629 ENGN 632
           + G 
Sbjct: 187 QKGY 190

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  116 bits (294), Expect = 5e-30
 Identities = 49/257 (19%), Positives = 84/257 (32%), Gaps = 67/257 (26%)

Query: 353 PIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLI 412
            +  A +  + K+   L      ++     G T   I       E  K L   GAD   I
Sbjct: 9   LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD---I 65

Query: 413 NYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKL 472
           N          +                         N+   SP ++       + L  +
Sbjct: 66  N---------LQ-------------------------NSISDSPYLYAGAQGRTEILAYM 91

Query: 473 IEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAG-ANIKLQNKYGETAITLAELNR 531
           ++ A  DL++ +  G +A + AA  GH++  +LLL  G  +I  QN +G TA+  A    
Sbjct: 92  LKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEA---- 147

Query: 532 NGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPL 591
                                       R   +   D+V  L+    D +  D  G T +
Sbjct: 148 -------------------------VGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAM 182

Query: 592 MLAAKSGHGSVCQLLIS 608
             A + G+  + ++L  
Sbjct: 183 DYANQKGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 97.9 bits (245), Expect = 2e-23
 Identities = 41/233 (17%), Positives = 82/233 (35%), Gaps = 47/233 (20%)

Query: 311 HNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLI 370
           +    L+  A   +  +  E+L +     +  V T   T   P+++A      +I + LI
Sbjct: 4   YEVGALLEAANQRDTKKVKEILQDTTYQVD-EVDTEGNT---PLNIAVHNNDIEIAKALI 59

Query: 371 SAGCNINSRTAAGETAAMICARYKHEECLKFLASEGA-DLGLINYAGQCANSIAKSSRWT 429
             G +IN + +  ++  +        E L ++      DL   N  G             
Sbjct: 60  DRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYG-----------GN 108

Query: 430 LGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFS 489
                                      L+   +   +D +K L+E    D+D Q+  G++
Sbjct: 109 --------------------------ALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYT 142

Query: 490 AAMIAAAA-----GHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLE 537
           A + A         + +  +LL+  GA+  +++  G TA+  A      E+ +
Sbjct: 143 ALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISK 195

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 89.0 bits (222), Expect = 2e-20
 Identities = 22/153 (14%), Positives = 43/153 (28%), Gaps = 39/153 (25%)

Query: 483 QDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILE 542
           +  +  +    A      +   +L      +   +  G T                    
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNT-------------------- 41

Query: 543 YALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSV 602
                          L+ A    D ++   L+ R  D+N  ++   +P + A   G   +
Sbjct: 42  --------------PLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEI 87

Query: 603 CQLLISSGAKCDIENARNE---TALALARENGN 632
              ++      D+ N  N     AL  A E G+
Sbjct: 88  LAYMLKHAT-PDL-NKHNRYGGNALIPAAEKGH 118

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 60.9 bits (149), Expect = 1e-10
 Identities = 38/201 (18%), Positives = 64/201 (31%), Gaps = 43/201 (21%)

Query: 311 HNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELR--PIHLAARLGSAKILRR 368
             G T ++ A+  N+    + L++   D         +  +   P   A   G  +IL  
Sbjct: 37  TEGNTPLNIAVHNNDIEIAKALIDRGADIN------LQNSISDSPYLYAGAQGRTEILAY 90

Query: 369 LISAG-CNINSRTAAGETAAMICARYKHEECLKFLASEG-ADLGLINYAGQCANSIAKSS 426
           ++     ++N     G  A +  A   H + +K L  +G  D+   N  G  A   A   
Sbjct: 91  MLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGL 150

Query: 427 RWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDAD 486
           R      Q +V                                K L+E    D   +D  
Sbjct: 151 REGNQLYQDIV--------------------------------KLLME-NGADQSIKDNS 177

Query: 487 GFSAAMIAAAAGHVEAFRLLL 507
           G +A   A   G+ E  ++L 
Sbjct: 178 GRTAMDYANQKGYTEISKILA 198

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 60.5 bits (148), Expect = 1e-10
 Identities = 34/182 (18%), Positives = 57/182 (31%), Gaps = 32/182 (17%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKAGACQ 147
             L  A       +   L      V++    G   T    AV  + +EI   LI  GA  
Sbjct: 8   ALLEAANQRDTKKVKEILQDTTYQVDEVDTEGN--TPLNIAVHNNDIEIAKALIDRGADI 65

Query: 148 EACEE----ALLETSYLGQARPAELLM---ATDLIRPQVSVH------ALVSACFRGFVN 194
                      L     G+      ++     D     ++ H      AL+ A  +G ++
Sbjct: 66  NLQNSISDSPYLYAGAQGRTEILAYMLKHATPD-----LNKHNRYGGNALIPAAEKGHID 120

Query: 195 VVDTLIKCG-VDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMD 253
            V  L++ G  D +  +         AL         +         +V+LL++ G    
Sbjct: 121 NVKLLLEDGREDIDFQND----FGYTALI----EAVGLREGNQLYQDIVKLLMENGADQS 172

Query: 254 IK 255
           IK
Sbjct: 173 IK 174

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 58.6 bits (143), Expect = 5e-10
 Identities = 33/243 (13%), Positives = 65/243 (26%), Gaps = 73/243 (30%)

Query: 183 ALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVV 242
            L +A  R    V + L       + +D                   L  AV +  I + 
Sbjct: 9   LLEAANQRDTKKVKEILQDTTYQVDEVD-------------TEGNTPLNIAVHNNDIEIA 55

Query: 243 RLLLQAGVKMDIKVRMG-------AWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSG 295
           + L+  G  ++++  +              +                     + Y     
Sbjct: 56  KALIDRGADINLQNSISDSPYLYAGAQGRTEI--------------------LAYMLKHA 95

Query: 296 AILHMLFQHISPNI---LHNGRTLIHHAILCNNARAVELLLNC------AVDKEFPVQTY 346
                      P++      G   +  A    +   V+LLL          +       +
Sbjct: 96  T----------PDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQND------F 139

Query: 347 SKTELRPIHLAARLGSAK-----ILRRLISAGCNINSRTAAGETAAMICARYKHEECLKF 401
             T    +  A  L         I++ L+  G + + +  +G TA     +  + E  K 
Sbjct: 140 GYT---ALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKI 196

Query: 402 LAS 404
           LA 
Sbjct: 197 LAQ 199

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  119 bits (301), Expect = 2e-31
 Identities = 39/161 (24%), Positives = 65/161 (40%), Gaps = 10/161 (6%)

Query: 456 PLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKL 515
            +  +    ++  L   IE  +  ++  D +GF+  M AAA G +     LL  GA+ +L
Sbjct: 6   SVHQLAAQGEMLYLATRIE-QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL 64

Query: 516 QNKYGETAITLAELNRNGEVLEQVILEYALEEG----QKGSAGFYALHRAAKRGDFDLVH 571
             K  E+A++LA      ++++       L+ G    +    G   L  A        V 
Sbjct: 65  LGKGRESALSLACSKGYTDIVK-----MLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVK 119

Query: 572 TLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAK 612
            L+    D       GY  + LA   G+ SV Q++ S   K
Sbjct: 120 MLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLK 160

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 96.7 bits (242), Expect = 2e-23
 Identities = 37/234 (15%), Positives = 65/234 (27%), Gaps = 72/234 (30%)

Query: 353 PIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLI 412
            +H  A  G    L   I     IN     G T  M  A +     ++FL   GAD  L+
Sbjct: 6   SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 65

Query: 413 NYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKL 472
                           +                           L         D +K L
Sbjct: 66  GKGR-----------ES--------------------------ALSLACSKGYTDIVKML 88

Query: 473 IEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRN 532
           ++   VD++E D +G +  + A    HV+  ++LL +GA+  ++   G  +         
Sbjct: 89  LD-CGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNS--------- 138

Query: 533 GEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDAD 586
                                    +  A   G   +   + S    +  +  +
Sbjct: 139 -------------------------MDLAVALGYRSVQQVIESHLLKLLQNIKE 167

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 89.4 bits (223), Expect = 7e-21
 Identities = 28/207 (13%), Positives = 60/207 (28%), Gaps = 42/207 (20%)

Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
                +H          +   +              +    P+  AA  G   ++  L+ 
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVIN----HTDEEGFTPLMWAAAHGQIAVVEFLLQ 57

Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLG 431
            G +        E+A  +     + + +K L   G D+   ++ G            T  
Sbjct: 58  NGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNG-----------GT-- 104

Query: 432 FQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAA 491
                                   PL++    N V  +K L+E +  D   +   G+++ 
Sbjct: 105 ------------------------PLLYAVHGNHVKCVKMLLE-SGADPTIETDSGYNSM 139

Query: 492 MIAAAAGHVEAFRLLLHAGANIKLQNK 518
            +A A G+    +++      +    K
Sbjct: 140 DLAVALGYRSVQQVIESHLLKLLQNIK 166

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 79.4 bits (197), Expect = 2e-17
 Identities = 24/76 (31%), Positives = 43/76 (56%)

Query: 557 ALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIE 616
           ++H+ A +G+   + T + +   +N +D +G+TPLM AA  G  +V + L+ +GA   + 
Sbjct: 6   SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 65

Query: 617 NARNETALALARENGN 632
               E+AL+LA   G 
Sbjct: 66  GKGRESALSLACSKGY 81

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 67.4 bits (166), Expect = 2e-13
 Identities = 28/180 (15%), Positives = 58/180 (32%), Gaps = 35/180 (19%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKAGACQ 147
            ++   A  G +  +   +     +N     G+  T    A     + +++ L++ GA  
Sbjct: 5   LSVHQLAAQGEMLYLATRIEQENVINHTDEEGF--TPLMWAAAHGQIAVVEFLLQNGADP 62

Query: 148 EACEE----ALLETSYLGQARPAELLMATDLIRPQVSVHA--------LVSACFRGFVNV 195
           +   +    AL      G     ++     L+   V V+         L+ A     V  
Sbjct: 63  QLLGKGRESALSLACSKGYTDIVKM-----LLDCGVDVNEYDWNGGTPLLYAVHGNHVKC 117

Query: 196 VDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIK 255
           V  L++ G D                  +   N++  AV     SV +++    +K+   
Sbjct: 118 VKMLLESGADPTIET-------------DSGYNSMDLAVALGYRSVQQVIESHLLKLLQN 164

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 48.9 bits (118), Expect = 6e-07
 Identities = 7/47 (14%), Positives = 11/47 (23%)

Query: 586 DGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGN 632
                +   A  G        I      +  +    T L  A  +G 
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQ 48

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 47.4 bits (114), Expect = 2e-06
 Identities = 34/207 (16%), Positives = 59/207 (28%), Gaps = 56/207 (27%)

Query: 183 ALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVV 242
           ++     +G +  + T I+     N  D                   L+ A    QI+VV
Sbjct: 6   SVHQLAAQGEMLYLATRIEQENVINHTD-------------EEGFTPLMWAAAHGQIAVV 52

Query: 243 RLLLQAGVKMDIKVRMG-------AWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSG 295
             LLQ G    +  +               D                     V+     G
Sbjct: 53  EFLLQNGADPQLLGKGRESALSLACSKGYTDI--------------------VKMLLDCG 92

Query: 296 AILHMLFQHISPNIL-HNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQT-YSKTELRP 353
                       N    NG T + +A+  N+ + V++LL    D    ++T         
Sbjct: 93  V---------DVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT--IETDSGYN---S 138

Query: 354 IHLAARLGSAKILRRLISAGCNINSRT 380
           + LA  LG   + + + S    +    
Sbjct: 139 MDLAVALGYRSVQQVIESHLLKLLQNI 165

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  119 bits (300), Expect = 3e-31
 Identities = 41/171 (23%), Positives = 71/171 (41%), Gaps = 9/171 (5%)

Query: 456 PLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKL 515
            +  +    ++D LK+ +   D  +++ D  GF+  + A+A G +E  R LL  GA+  +
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64

Query: 516 QNKYGETAITLAELNRNGEVLEQVILEYALEEG----QKGSAGFYALHRAAKRGDFDLVH 571
             K  E+A++LA      +++        LE           G   L  A +      V 
Sbjct: 65  LAKERESALSLASTGGYTDIVG-----LLLERDVDINIYDWNGGTPLLYAVRGNHVKCVE 119

Query: 572 TLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNET 622
            L++R  D+      GYTP+ LA   G+  V Q++ +   K    N     
Sbjct: 120 ALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  103 bits (259), Expect = 1e-25
 Identities = 40/239 (16%), Positives = 68/239 (28%), Gaps = 73/239 (30%)

Query: 353 PIHLAARLGSAKILRRLISAGCN-INSRTAAGETAAMICARYKHEECLKFLASEGADLGL 411
            IH  A  G    L+  +  G N +N     G T  +  + +   E ++FL   GAD   
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD--- 61

Query: 412 INYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKK 471
            +        I    R +                           L   +     D +  
Sbjct: 62  PH--------ILAKERES--------------------------ALSLASTGGYTDIVGL 87

Query: 472 LIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNR 531
           L+E  DVD++  D +G +  + A    HV+    LL  GA++  +   G T         
Sbjct: 88  LLE-RDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTP-------- 138

Query: 532 NGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTP 590
                                     +  A   G   +   + +    +  S+     P
Sbjct: 139 --------------------------MDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 94.0 bits (235), Expect = 2e-22
 Identities = 28/210 (13%), Positives = 66/210 (31%), Gaps = 41/210 (19%)

Query: 313 GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISA 372
               IH          ++  L    +    V    +    P+  A+  G  + +R L+  
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNL---VNKPDERGFTPLIWASAFGEIETVRFLLEW 58

Query: 373 GCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGF 432
           G + +      E+A  + +   + + +  L     D+ + ++ G            T   
Sbjct: 59  GADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNG-----------GT--- 104

Query: 433 QQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAM 492
                                  PL++  + N V  ++ L+     DL  +   G++   
Sbjct: 105 -----------------------PLLYAVRGNHVKCVEALLA-RGADLTTEADSGYTPMD 140

Query: 493 IAAAAGHVEAFRLLLHAGANIKLQNKYGET 522
           +A A G+ +  +++ +    +   N     
Sbjct: 141 LAVALGYRKVQQVIENHILKLFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 87.5 bits (218), Expect = 4e-20
 Identities = 24/142 (16%), Positives = 44/142 (30%), Gaps = 35/142 (24%)

Query: 492 MIAAAAGHVEAFRLLLHAGAN-IKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQK 550
              AA G ++  +  L  G N +   ++ G T                            
Sbjct: 7   HQLAAQGELDQLKEHLRKGDNLVNKPDERGFTP--------------------------- 39

Query: 551 GSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSG 610
                  L  A+  G+ + V  L+    D +    +  + L LA+  G+  +  LL+   
Sbjct: 40  -------LIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERD 92

Query: 611 AKCDIENARNETALALARENGN 632
              +I +    T L  A    +
Sbjct: 93  VDINIYDWNGGTPLLYAVRGNH 114

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 62.8 bits (154), Expect = 1e-11
 Identities = 28/168 (16%), Positives = 49/168 (29%), Gaps = 44/168 (26%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKAGACQ 147
           T L  A+  G +  VR LL  GA+ +         +A   A    + +I+ LL++     
Sbjct: 38  TPLIWASAFGEIETVRFLLEWGADPHILAKERE--SALSLASTGGYTDIVGLLLERDVDI 95

Query: 148 EACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDAN 207
              +         G          T           L+ A     V  V+ L+  G D  
Sbjct: 96  NIYDWN-------GG---------T----------PLLYAVRGNHVKCVEALLARGADLT 129

Query: 208 AIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIK 255
                           +     +  AV      V +++    +K+   
Sbjct: 130 TEA-------------DSGYTPMDLAVALGYRKVQQVIENHILKLFQS 164

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 61.7 bits (151), Expect = 3e-11
 Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 4/97 (4%)

Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
            G T +  A        V  LL    D        +K     + LA+  G   I+  L+ 
Sbjct: 35  RGFTPLIWASAFGEIETVRFLLEWGADPH----ILAKERESALSLASTGGYTDIVGLLLE 90

Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGAD 408
              +IN     G T  +   R  H +C++ L + GAD
Sbjct: 91  RDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGAD 127

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 60.9 bits (149), Expect = 5e-11
 Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 4/106 (3%)

Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
              + +  A        V LLL   VD       Y      P+  A R    K +  L++
Sbjct: 68  ERESALSLASTGGYTDIVGLLLERDVDIN----IYDWNGGTPLLYAVRGNHVKCVEALLA 123

Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQ 417
            G ++ +   +G T   +     + +  + + +    L   N    
Sbjct: 124 RGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPA 169

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 53.6 bits (130), Expect = 2e-08
 Identities = 23/124 (18%), Positives = 41/124 (33%), Gaps = 31/124 (25%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKAGACQ 147
           +AL LA+  G   +V  LL    ++N   + G   T    AVR +H++ ++ L+  GA  
Sbjct: 71  SALSLASTGGYTDIVGLLLERDVDINIYDWNGG--TPLLYAVRGNHVKCVEALLARGADL 128

Query: 148 EACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDAN 207
                     +  G          T           +  A   G+  V   +    +   
Sbjct: 129 TT-------EADSGY---------T----------PMDLAVALGYRKVQQVIENHILKLF 162

Query: 208 AIDR 211
             + 
Sbjct: 163 QSNL 166

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 48.6 bits (117), Expect = 8e-07
 Identities = 34/213 (15%), Positives = 60/213 (28%), Gaps = 57/213 (26%)

Query: 183 ALVSACFRGFVNVVDTLIKCGVDA-NAIDRVLLQSSKPALHANFDCNALVGAVVSRQISV 241
           ++     +G ++ +   ++ G +  N  D                   L+ A    +I  
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPD-------------ERGFTPLIWASAFGEIET 51

Query: 242 VRLLLQAGVKMDIKVRMG-------AWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESS 294
           VR LL+ G    I  +         +     D                     V      
Sbjct: 52  VRFLLEWGADPHILAKERESALSLASTGGYTDI--------------------VGLLLER 91

Query: 295 GAILHMLFQHISPNIL-HNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQT-YSKTELR 352
                        NI   NG T + +A+  N+ + VE LL    D     +     T   
Sbjct: 92  DV---------DINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLT--TEADSGYT--- 137

Query: 353 PIHLAARLGSAKILRRLISAGCNINSRTAAGET 385
           P+ LA  LG  K+ + + +    +         
Sbjct: 138 PMDLAVALGYRKVQQVIENHILKLFQSNLVPAD 170

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  118 bits (296), Expect = 4e-30
 Identities = 46/263 (17%), Positives = 89/263 (33%), Gaps = 41/263 (15%)

Query: 353 PIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLI 412
             +LA      ++  R+++             TA        H E ++FL   G  +   
Sbjct: 10  ICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 69

Query: 413 NYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKL 472
           + AG           W+                          PL     A   + +K L
Sbjct: 70  DDAG-----------WS--------------------------PLHIAASAGXDEIVKAL 92

Query: 473 IEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRN 532
           +      ++  + +G +    AA+    E   +LL  GAN   ++ Y  TA+  A    N
Sbjct: 93  LV-KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGN 151

Query: 533 GEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLM 592
            +++  ++L Y      + + G   LH A      +    LV++   +   + +  TPL 
Sbjct: 152 LKMVH-ILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQ 210

Query: 593 LAAKSGHGSVCQLLISSGAKCDI 615
           +A   G   +    ++ G +  +
Sbjct: 211 VAK--GGLGLILKRLAEGEEASM 231

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  104 bits (261), Expect = 2e-25
 Identities = 36/191 (18%), Positives = 71/191 (37%), Gaps = 2/191 (1%)

Query: 450 NASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHA 509
             S              +  ++++          D D  +A   A +AGH E    LL  
Sbjct: 4   CVSNIMICNLAYSGKLDELKERILA-DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL 62

Query: 510 GANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDL 569
           G  +  ++  G + + +A      + + + +L            G   LH AA +   ++
Sbjct: 63  GVPVNDKDDAGWSPLHIAASA-GXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEI 121

Query: 570 VHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARE 629
              L+    + +A D    T +  AA  G+  +  +L+   A  +I++    T L LA +
Sbjct: 122 AVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACD 181

Query: 630 NGNGNEAENVI 640
                EA+ ++
Sbjct: 182 EERVEEAKFLV 192

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 81.5 bits (201), Expect = 2e-17
 Identities = 32/183 (17%), Positives = 53/183 (28%), Gaps = 43/183 (23%)

Query: 486 DGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYAL 545
                  +A +    E    +L   +     ++   TA                      
Sbjct: 6   SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTA---------------------- 43

Query: 546 EEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQL 605
                       LH A   G  ++V  L+     VN  D  G++PL +AA +G   + + 
Sbjct: 44  ------------LHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKA 91

Query: 606 LISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHTKCGKGS 665
           L+  GA  +  N    T L  A               E+A+ L+  G            +
Sbjct: 92  LLVKGAHVNAVNQNGCTPLHYAASKNR---------HEIAVMLLEGGANPDAKDHYDATA 142

Query: 666 PHV 668
            H 
Sbjct: 143 MHR 145

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 71.4 bits (175), Expect = 4e-14
 Identities = 14/92 (15%), Positives = 34/92 (36%)

Query: 549 QKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLIS 608
           +   +     + A      +L   +++       +D D  T L  A  +GH  + + L+ 
Sbjct: 2   EGCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ 61

Query: 609 SGAKCDIENARNETALALARENGNGNEAENVI 640
            G   + ++    + L +A   G     + ++
Sbjct: 62  LGVPVNDKDDAGWSPLHIAASAGXDEIVKALL 93

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 69.5 bits (170), Expect = 2e-13
 Identities = 29/202 (14%), Positives = 54/202 (26%), Gaps = 44/202 (21%)

Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
            G + +H A        V+ LL         V   ++    P+H AA     +I   L+ 
Sbjct: 72  AGWSPLHIAASAGXDEIVKALLVKGAH----VNAVNQNGCTPLHYAASKNRHEIAVMLLE 127

Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLG 431
            G N +++     TA    A   + + +  L    A                        
Sbjct: 128 GGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS----------------------- 164

Query: 432 FQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAA 491
                             +    +PL        V+  K L+      +  ++ +  +  
Sbjct: 165 --------------TNIQDTEGNTPLHLACDEERVEEAKFLVT-QGASIYIENKEEKTP- 208

Query: 492 MIAAAAGHVEAFRLLLHAGANI 513
            +  A G +      L  G   
Sbjct: 209 -LQVAKGGLGLILKRLAEGEEA 229

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 64.5 bits (157), Expect = 1e-11
 Identities = 45/290 (15%), Positives = 81/290 (27%), Gaps = 71/290 (24%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKAGACQ 147
               LA       L  ++L+  +   +        TA   A    H EI++ L++ G   
Sbjct: 9   MICNLAYSGKLDELKERILADKSLATRTDQDSR--TALHWACSAGHTEIVEFLLQLGVPV 66

Query: 148 EACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDAN 207
              ++A       G          +           L  A   G   +V  L+  G   N
Sbjct: 67  NDKDDA-------GW---------S----------PLHIAASAGXDEIVKALLVKGAHVN 100

Query: 208 AIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWDMDT 267
           A++                C  L  A    +  +  +LL+ G   D K           T
Sbjct: 101 AVN-------------QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD------AT 141

Query: 268 GEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCNNAR 327
                   G  +        V       A  ++            G T +H A       
Sbjct: 142 AMHRAAAKGNLK-------MVHILLFYKASTNIQDT--------EGNTPLHLACDEERVE 186

Query: 328 AVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNIN 377
             + L+         +   +K E  P+ +A   G   ++ + ++ G   +
Sbjct: 187 EAKFLVTQGAS----IYIENKEEKTPLQVAK--GGLGLILKRLAEGEEAS 230

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 63.0 bits (153), Expect = 3e-11
 Identities = 47/251 (18%), Positives = 80/251 (31%), Gaps = 52/251 (20%)

Query: 183 ALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVV 242
               A       + + ++     A   D                  AL  A  +    +V
Sbjct: 10  ICNLAYSGKLDELKERILADKSLATRTD-------------QDSRTALHWACSAGHTEIV 56

Query: 243 RLLLQAGVKMDIKVRMG-------AWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSG 295
             LLQ GV ++ K   G       A +             G  E        V+     G
Sbjct: 57  EFLLQLGVPVNDKDDAGWSPLHIAASA-------------GXDE-------IVKALLVKG 96

Query: 296 AILHMLFQHISPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIH 355
           A ++ + Q        NG T +H+A   N      +LL    +           +   +H
Sbjct: 97  AHVNAVNQ--------NGCTPLHYAASKNRHEIAVMLLEGGAN----PDAKDHYDATAMH 144

Query: 356 LAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYA 415
            AA  G+ K++  L+    + N +   G T   +    +  E  KFL ++GA + + N  
Sbjct: 145 RAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKE 204

Query: 416 GQCANSIAKSS 426
            +    +AK  
Sbjct: 205 EKTPLQVAKGG 215

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 55.6 bits (134), Expect = 8e-09
 Identities = 35/176 (19%), Positives = 61/176 (34%), Gaps = 23/176 (13%)

Query: 87  KTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGY-ATTAAVREDHLEILDLLIKAGA 145
               + L +AA AG   +V+ LL  GA+VN     G      A  ++  EI  +L++ GA
Sbjct: 71  DAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA 130

Query: 146 CQEACEE----ALLETSYLGQARPAELLMATDL---IRPQVSVHALVSACFRGFVNVVDT 198
             +A +     A+   +  G  +   +L+       I+       L  AC    V     
Sbjct: 131 NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKF 190

Query: 199 LIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDI 254
           L+  G      ++      K  L            V    + ++   L  G +  +
Sbjct: 191 LVTQGASIYIENK----EEKTPLQ-----------VAKGGLGLILKRLAEGEEASM 231

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  114 bits (288), Expect = 2e-29
 Identities = 41/169 (24%), Positives = 78/169 (46%), Gaps = 9/169 (5%)

Query: 468 ALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLA 527
             K + +  D   + +D+   +  M+A   G   A   L+     ++ ++  G TA+  A
Sbjct: 16  DEKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWA 75

Query: 528 ELNRNGEVLEQVILEYA-LEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDAD 586
             N    + E+++ + + +    K  +G   L  +   G  ++ + L+    +VN  + +
Sbjct: 76  VKNNRLGIAEKLLSKGSNVNT--KDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLE 133

Query: 587 GYTPLMLAAKSGHGSVCQLLISSGAKCDIENARN---ETALALARENGN 632
           G TPL++A+K G   + + L+  GA  DI +AR+    TA A AR  G 
Sbjct: 134 GETPLIVASKYGRSEIVKKLLELGA--DI-SARDLTGLTAEASARIFGR 179

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  100 bits (251), Expect = 2e-24
 Identities = 35/154 (22%), Positives = 67/154 (43%), Gaps = 4/154 (2%)

Query: 456 PLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKL 515
           PLM        +A+ KL+E     L+++D +G +A + A     +     LL  G+N+  
Sbjct: 38  PLMVACMLGMENAIDKLVE-NFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT 96

Query: 516 QNKYGETAITLAELNRNGEVLEQVILEYA-LEEGQKGSAGFYALHRAAKRGDFDLVHTLV 574
           ++  G+T +  + +    E+   ++   A + +  +   G   L  A+K G  ++V  L+
Sbjct: 97  KDFSGKTPLMWSIIFGYSEMSYFLLEHGANVND--RNLEGETPLIVASKYGRSEIVKKLL 154

Query: 575 SRCYDVNASDADGYTPLMLAAKSGHGSVCQLLIS 608
               D++A D  G T    A   G   V ++   
Sbjct: 155 ELGADISARDLTGLTAEASARIFGRQEVIKIFTE 188

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 97.8 bits (245), Expect = 1e-23
 Identities = 42/228 (18%), Positives = 84/228 (36%), Gaps = 50/228 (21%)

Query: 311 HNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLI 370
            NG  +       +  + ++ L N   D       Y++T   P+ +A  LG    + +L+
Sbjct: 6   KNGEIVEKIKDEKSINQNLDFLRN-YRDS------YNRT---PLMVACMLGMENAIDKLV 55

Query: 371 SAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAK-SSRWT 429
                +  +   G TA +   +       + L S+G++   +N          K  S  T
Sbjct: 56  ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN---VN---------TKDFSGKT 103

Query: 430 LGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFS 489
                                     PLM+       +    L+E    ++++++ +G +
Sbjct: 104 --------------------------PLMWSIIFGYSEMSYFLLE-HGANVNDRNLEGET 136

Query: 490 AAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLE 537
             ++A+  G  E  + LL  GA+I  ++  G TA   A +    EV++
Sbjct: 137 PLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIK 184

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 83.6 bits (208), Expect = 1e-18
 Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 16/126 (12%)

Query: 510 GANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDL 569
           G+++   +K GE    + +     + L+ +          + S     L  A   G  + 
Sbjct: 1   GSHM---DKNGEIVEKIKDEKSINQNLDFLRNY-------RDSYNRTPLMVACMLGMENA 50

Query: 570 VHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARN---ETALAL 626
           +  LV     +   D +G T L+ A K+    + + L+S G+  ++ N ++   +T L  
Sbjct: 51  IDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGS--NV-NTKDFSGKTPLMW 107

Query: 627 ARENGN 632
           +   G 
Sbjct: 108 SIIFGY 113

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 74.0 bits (183), Expect = 3e-15
 Identities = 37/202 (18%), Positives = 67/202 (33%), Gaps = 54/202 (26%)

Query: 312 NGRTLIHHAILCNNARAVELLLNC-----AVDKEFPVQTYSKTELRPIHLAARLGSAKIL 366
             RT +  A +     A++ L+         D          T    +  A +     I 
Sbjct: 34  YNRTPLMVACMLGMENAIDKLVENFDKLEDKDI------EGST---ALIWAVKNNRLGIA 84

Query: 367 RRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAK-S 425
            +L+S G N+N++  +G+T  M    + + E   FL   GA+   +N          +  
Sbjct: 85  EKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGAN---VN---------DRNL 132

Query: 426 SRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDA 485
              T                          PL+  ++    + +KKL+E    D+  +D 
Sbjct: 133 EGET--------------------------PLIVASKYGRSEIVKKLLE-LGADISARDL 165

Query: 486 DGFSAAMIAAAAGHVEAFRLLL 507
            G +A   A   G  E  ++  
Sbjct: 166 TGLTAEASARIFGRQEVIKIFT 187

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 57.4 bits (140), Expect = 1e-09
 Identities = 19/93 (20%), Positives = 43/93 (46%), Gaps = 4/93 (4%)

Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
           +G+T +  +I+   +     LL    +         +T   P+ +A++ G ++I+++L+ 
Sbjct: 100 SGKTPLMWSIIFGYSEMSYFLLEHGANVN-DRNLEGET---PLIVASKYGRSEIVKKLLE 155

Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLAS 404
            G +I++R   G TA      +  +E +K    
Sbjct: 156 LGADISARDLTGLTAEASARIFGRQEVIKIFTE 188

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 54.3 bits (132), Expect = 1e-08
 Identities = 32/175 (18%), Positives = 57/175 (32%), Gaps = 43/175 (24%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKAGACQ 147
           T L +A   G    + KL+     +  K   G   TA   AV+ + L I + L+  G+  
Sbjct: 37  TPLMVACMLGMENAIDKLVENFDKLEDKDIEGS--TALIWAVKNNRLGIAEKLLSKGSNV 94

Query: 148 EACEE----ALLETSYLGQARPAELLMATDLIRPQVSVHA------------LVSACFRG 191
              +      L+ +   G +  +  L         +   A            L+ A   G
Sbjct: 95  NTKDFSGKTPLMWSIIFGYSEMSYFL---------LEHGANVNDRNLEGETPLIVASKYG 145

Query: 192 FVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLL 246
              +V  L++ G D +A D                  A   A +  +  V+++  
Sbjct: 146 RSEIVKKLLELGADISARD-------------LTGLTAEASARIFGRQEVIKIFT 187

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 44.7 bits (107), Expect = 3e-05
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKAGA 145
           T L +A+  G   +V+KLL LGA+++ +   G   TA   A      E++ +  +   
Sbjct: 136 TPLIVASKYGRSEIVKKLLELGADISARDLTGL--TAEASARIFGRQEVIKIFTEVRR 191

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  112 bits (283), Expect = 7e-29
 Identities = 39/177 (22%), Positives = 64/177 (36%), Gaps = 34/177 (19%)

Query: 456 PLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKL 515
            +    +  +  A++  ++  + DL++ D  GFS    A   G      +L+  GA I +
Sbjct: 8   DIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV 67

Query: 516 QNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVS 575
            N+  +T                                   LH AA  G  D+V  L+ 
Sbjct: 68  MNRGDDT----------------------------------PLHLAASHGHRDIVQKLLQ 93

Query: 576 RCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGN 632
              D+NA +  G  PL  A   G   V + L+++GA   I N   E  +  A+    
Sbjct: 94  YKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLR 150

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 91.0 bits (227), Expect = 3e-21
 Identities = 35/248 (14%), Positives = 59/248 (23%), Gaps = 79/248 (31%)

Query: 353 PIHLAARLGSAKILRRLISAG-CNINSRTAAGETAAMICARYKHEECLKFLASEGADLGL 411
            I    R G+A  +R  +     ++N     G +      R      ++ L   GA    
Sbjct: 8   DIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR--- 64

Query: 412 INYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKK 471
                                             I   N    +PL         D ++K
Sbjct: 65  ----------------------------------INVMNRGDDTPLHLAASHGHRDIVQK 90

Query: 472 LIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNR 531
           L++    D++  +  G      A   G  +    L+  GA + + NKYGE          
Sbjct: 91  LLQ-YKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEM--------- 140

Query: 532 NGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPL 591
                                     + +A       L         ++N        P 
Sbjct: 141 -------------------------PVDKAKAPLRELLRERAEKMGQNLNR------IPY 169

Query: 592 MLAAKSGH 599
                 G 
Sbjct: 170 KDTFWKGT 177

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 79.8 bits (198), Expect = 2e-17
 Identities = 35/203 (17%), Positives = 54/203 (26%), Gaps = 43/203 (21%)

Query: 312 NGRTLIHHAILCNNARAVELLL-NCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLI 370
                I       NA AV L L N   D    +         P+H A R G + ++  LI
Sbjct: 4   EFMDDIFTQCREGNAVAVRLWLDNTEND----LNQGDDHGFSPLHWACREGRSAVVEMLI 59

Query: 371 SAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTL 430
             G  IN      +T   + A + H + ++ L    AD+  +N  G              
Sbjct: 60  MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHG-----------NV- 107

Query: 431 GFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSA 490
                                    PL +          + L+      +   +  G   
Sbjct: 108 -------------------------PLHYACFWGQDQVAEDLVA-NGALVSICNKYGEMP 141

Query: 491 AMIAAAAGHVEAFRLLLHAGANI 513
              A A             G N+
Sbjct: 142 VDKAKAPLRELLRERAEKMGQNL 164

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 63.6 bits (156), Expect = 7e-12
 Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 4/103 (3%)

Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
              T +H A    +   V+ LL    D    V  +      P+H A   G  ++   L++
Sbjct: 71  GDDTPLHLAASHGHRDIVQKLLQYKADINA-VNEHGNV---PLHYACFWGQDQVAEDLVA 126

Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINY 414
            G  ++     GE           E   +     G +L  I Y
Sbjct: 127 NGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPY 169

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 58.2 bits (142), Expect = 5e-10
 Identities = 31/175 (17%), Positives = 55/175 (31%), Gaps = 36/175 (20%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGAN-VNQKLFRGYATTA---AVREDHLEILDLLIKAGAC 146
             +F     GN   VR  L    N +NQ    G+  +    A RE    ++++LI  GA 
Sbjct: 7   DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGF--SPLHWACREGRSAVVEMLIMRGAR 64

Query: 147 QEACEE----ALLETSYLGQARPAELLMATDLIRPQVSVHA--------LVSACFRGFVN 194
                      L   +  G     +      L++ +  ++A        L  ACF G   
Sbjct: 65  INVMNRGDDTPLHLAASHGHRDIVQK-----LLQYKADINAVNEHGNVPLHYACFWGQDQ 119

Query: 195 VVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAG 249
           V + L+  G   +  +              +    +  A    +  +     + G
Sbjct: 120 VAEDLVANGALVSICN-------------KYGEMPVDKAKAPLRELLRERAEKMG 161

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 53.2 bits (129), Expect = 3e-08
 Identities = 32/139 (23%), Positives = 46/139 (33%), Gaps = 30/139 (21%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKAGACQ 147
           + L  A   G   +V  L+  GA +N         T    A    H +I+  L++  A  
Sbjct: 41  SPLHWACREGRSAVVEMLIMRGARINVMNRGDD--TPLHLAASHGHRDIVQKLLQYKADI 98

Query: 148 EACEE----ALLETSYLGQARPAELLMATDLIRPQVSVHALVS------------ACFRG 191
            A  E     L    + GQ + AE L         V+  ALVS            A    
Sbjct: 99  NAVNEHGNVPLHYACFWGQDQVAEDL---------VANGALVSICNKYGEMPVDKAKAPL 149

Query: 192 FVNVVDTLIKCGVDANAID 210
              + +   K G + N I 
Sbjct: 150 RELLRERAEKMGQNLNRIP 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  110 bits (278), Expect = 3e-28
 Identities = 51/164 (31%), Positives = 84/164 (51%), Gaps = 16/164 (9%)

Query: 476 ADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEV 535
           +        +D     + AA AG  +  R+L+  GA++  ++  G T + LA  N + E+
Sbjct: 4   SHH-HHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEI 62

Query: 536 LEQVILEYALEEG----QKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPL 591
           +E       L+ G        AG   L  AA  G  ++V  L+    DVNA+D +G+TPL
Sbjct: 63  VE-----VLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPL 117

Query: 592 MLAAKSGHGSVCQLLISSGAKCDIENARNE---TALALARENGN 632
            LAA  GH  + ++L+ +GA  D+ NA+++   TA  ++ +NGN
Sbjct: 118 HLAAMFGHLEIVEVLLKNGA--DV-NAQDKFGKTAFDISIDNGN 158

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  101 bits (255), Expect = 4e-25
 Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 10/173 (5%)

Query: 440 IRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGH 499
           +R  +      +     L+   +A   D ++ L+     D++ +DA G++   +AA  GH
Sbjct: 1   MRGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMA-NGADVNAEDASGWTPLHLAAFNGH 59

Query: 500 VEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEG----QKGSAGF 555
           +E   +LL  GA++   +  G T + LA L  + E     I+E  L+ G         G 
Sbjct: 60  LEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLE-----IVEVLLKNGADVNANDMEGH 114

Query: 556 YALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLIS 608
             LH AA  G  ++V  L+    DVNA D  G T   ++  +G+  + ++L  
Sbjct: 115 TPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 84.7 bits (211), Expect = 3e-19
 Identities = 44/185 (23%), Positives = 81/185 (43%), Gaps = 38/185 (20%)

Query: 353 PIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLI 412
            +  AAR G    +R L++ G ++N+  A+G T   + A   H E ++ L   GAD+  +
Sbjct: 17  KLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV 76

Query: 413 NYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKL 472
           ++AG            T                          PL        ++ ++ L
Sbjct: 77  DHAG-----------MT--------------------------PLRLAALFGHLEIVEVL 99

Query: 473 IEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRN 532
           ++    D++  D +G +   +AA  GH+E   +LL  GA++  Q+K+G+TA  ++  N N
Sbjct: 100 LK-NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGN 158

Query: 533 GEVLE 537
            ++ E
Sbjct: 159 EDLAE 163

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 70.9 bits (175), Expect = 2e-14
 Identities = 39/205 (19%), Positives = 71/205 (34%), Gaps = 50/205 (24%)

Query: 308 NILH--NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELR--PIHLAARLGSA 363
           +  H  +    +  A        V +L+    D        ++      P+HLAA  G  
Sbjct: 7   HHHHGSDLGKKLLEAARAGRDDEVRILMANGADVN------AEDASGWTPLHLAAFNGHL 60

Query: 364 KILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIA 423
           +I+  L+  G ++N+   AG T   + A + H E ++ L   GAD   +N         A
Sbjct: 61  EIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGAD---VN---------A 108

Query: 424 KSS-RWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDE 482
                 T                          PL        ++ ++ L++    D++ 
Sbjct: 109 NDMEGHT--------------------------PLHLAAMFGHLEIVEVLLK-NGADVNA 141

Query: 483 QDADGFSAAMIAAAAGHVEAFRLLL 507
           QD  G +A  I+   G+ +   +L 
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEILQ 166

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 59.3 bits (145), Expect = 2e-10
 Identities = 43/168 (25%), Positives = 65/168 (38%), Gaps = 44/168 (26%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKAGACQ 147
             L  AA AG    VR L++ GA+VN +   G+  T    A    HLEI+++L+K GA  
Sbjct: 16  KKLLEAARAGRDDEVRILMANGADVNAEDASGW--TPLHLAAFNGHLEIVEVLLKNGADV 73

Query: 148 EACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDAN 207
            A + A       G                      L  A   G + +V+ L+K G D N
Sbjct: 74  NAVDHA-------GMT-------------------PLRLAALFGHLEIVEVLLKNGADVN 107

Query: 208 AIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIK 255
           A D                   L  A +   + +V +LL+ G  ++ +
Sbjct: 108 AND-------------MEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQ 142

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 52.7 bits (128), Expect = 4e-08
 Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 8/95 (8%)

Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELR--PIHLAARLGSAKILRRL 369
            G T +  A L  +   VE+LL    D        +       P+HLAA  G  +I+  L
Sbjct: 79  AGMTPLRLAALFGHLEIVEVLLKNGADVN------ANDMEGHTPLHLAAMFGHLEIVEVL 132

Query: 370 ISAGCNINSRTAAGETAAMICARYKHEECLKFLAS 404
           +  G ++N++   G+TA  I     +E+  + L  
Sbjct: 133 LKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  108 bits (273), Expect = 2e-27
 Identities = 23/189 (12%), Positives = 49/189 (25%), Gaps = 18/189 (9%)

Query: 449 SNA-SRFSPLMFVTQANDVDALKKLIEW-ADVDLDE-QDADGFSAAMIAAAAGHVEAFRL 505
           SNA S +  +         +   +L E   +      +    +            +    
Sbjct: 1   SNAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMF 60

Query: 506 LLHAGANIKLQNKYGETAITLAELNRNGEVLEQV-ILEYALEEG----QKGSAGFYALHR 560
           L++ GA+IK + K G T           ++     + +  LE+G             + +
Sbjct: 61  LINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFK 120

Query: 561 AAKRGDFDLVHT-------LVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKC 613
                  D                  +   D  G T L    +       +++       
Sbjct: 121 NIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIK-- 178

Query: 614 DIENARNET 622
              N +  +
Sbjct: 179 KY-NLKENS 186

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 88.6 bits (220), Expect = 2e-20
 Identities = 23/167 (13%), Positives = 44/167 (26%), Gaps = 37/167 (22%)

Query: 486 DGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYAL 545
             +     AA  G  E F  L   G   K                               
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVL--------------------------- 37

Query: 546 EEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSV--- 602
               K +  +  L        + +   L+++  D+ +   +G T      + G   +   
Sbjct: 38  ----KSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGT 93

Query: 603 ---CQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELAL 646
              C++ +  GA         +  +     N   +E E + L +L  
Sbjct: 94  TELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIF 140

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 81.3 bits (201), Expect = 7e-18
 Identities = 26/256 (10%), Positives = 54/256 (21%), Gaps = 88/256 (34%)

Query: 347 SKTELRPIHLAARLGSAKILRRLISAGCNI---NSRTAAGETAAMICARYKHEECLKFLA 403
           + +E R +  AA LG+ +    L   G        ++                +   FL 
Sbjct: 3   AMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLI 62

Query: 404 SEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQA 463
           ++GAD+      G                                      +    + Q 
Sbjct: 63  NKGADIKSRTKEGT-------------------------------------TLFFPLFQG 85

Query: 464 N------DVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFR-------LLLHAG 510
                    +  K  +E    D+                   V+          +   +G
Sbjct: 86  GGNDITGTTELCKIFLE-KGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSG 144

Query: 511 ANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLV 570
             + +++K+G T                                  AL    +      +
Sbjct: 145 LQLLIKDKWGLT----------------------------------ALEFVKRCQKPIAL 170

Query: 571 HTLVSRCYDVNASDAD 586
             +       N  +  
Sbjct: 171 KMMEDYIKKYNLKENS 186

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 79.7 bits (197), Expect = 3e-17
 Identities = 27/221 (12%), Positives = 54/221 (24%), Gaps = 54/221 (24%)

Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTEL--RPIHLAARLGSAKILRRL 369
           +    +  A +         L     + +   ++  K+ +    +         KI   L
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDK---ESVLKSNILYDVLRNNNDEARYKISMFL 61

Query: 370 ISAGCNINSRTAAGETAAMICARYKHE------ECLKFLASEGADLGLINYAGQCANSIA 423
           I+ G +I SRT  G T      +          E  K    +GAD+  +           
Sbjct: 62  INKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPY------- 114

Query: 424 KSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKK------LIEWAD 477
                                            +        VD  +       +   + 
Sbjct: 115 ----KI--------------------------VVFKNIFNYFVDENEMIPLYKLIFSQSG 144

Query: 478 VDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNK 518
           + L  +D  G +A           A +++        L+  
Sbjct: 145 LQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKEN 185

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 24/235 (10%), Positives = 49/235 (20%), Gaps = 71/235 (30%)

Query: 183 ALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVV 242
            + +A   G       L + G +               L+       L       +  + 
Sbjct: 9   TVSAAAMLGTYEDFLELFEKGYEDKESV-----LKSNILYD-----VLRNNNDEARYKIS 58

Query: 243 RLLLQAGVKMDIKVRMG-------AWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSG 295
             L+  G  +  + + G             D      +               + F   G
Sbjct: 59  MFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTEL--------------CKIFLEKG 104

Query: 296 AILHMLFQHISPNIL-HNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPI 354
           A             L    + ++   I        E++                      
Sbjct: 105 A---------DITALYKPYKIVVFKNIFNYFVDENEMIP--------------------- 134

Query: 355 HLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADL 409
                    K++     +G  +  +   G TA     R +    LK +       
Sbjct: 135 -------LYKLI--FSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKY 180

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 50.1 bits (120), Expect = 4e-07
 Identities = 23/193 (11%), Positives = 50/193 (25%), Gaps = 37/193 (19%)

Query: 87  KTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRG----YATTAAVREDHLEILDLLIK 142
            +E   +  AA  G      +L   G    + + +             E   +I   LI 
Sbjct: 4   MSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN 63

Query: 143 AGACQEACEE----ALLETSYLGQARPAELL-MATDLIRPQVSVHA--------LVSACF 189
            GA  ++  +            G         +    +     + A        +    F
Sbjct: 64  KGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIF 123

Query: 190 RGFVNVVDT-------LIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVV 242
             FV+  +          + G+     D              +   AL      ++   +
Sbjct: 124 NYFVDENEMIPLYKLIFSQSGLQLLIKD-------------KWGLTALEFVKRCQKPIAL 170

Query: 243 RLLLQAGVKMDIK 255
           +++     K ++K
Sbjct: 171 KMMEDYIKKYNLK 183

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 13/143 (9%), Positives = 36/143 (25%), Gaps = 25/143 (17%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDH------LEILDLLI 141
             L          +   L++ GA++  +   G   T      +          E+  + +
Sbjct: 44  DVLRNNNDEARYKISMFLINKGADIKSRTKEGT--TLFFPLFQGGGNDITGTTELCKIFL 101

Query: 142 KAGACQEACEE----ALLETSYLGQARPAELLMATD--LIRPQVSVHA--------LVSA 187
           + GA   A  +     + +  +       E++        +  + +          L   
Sbjct: 102 EKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFV 161

Query: 188 CFRGFVNVVDTLIKCGVDANAID 210
                   +  +       N  +
Sbjct: 162 KRCQKPIALKMMEDYIKKYNLKE 184

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  110 bits (277), Expect = 3e-27
 Identities = 43/280 (15%), Positives = 79/280 (28%), Gaps = 57/280 (20%)

Query: 353 PIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLI 412
              +  + G +           ++ S     ET     AR   E+ L  L  E  D    
Sbjct: 18  EYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQALSQLL-EDRD---- 69

Query: 413 NYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKL 472
                                            + + + +  + L+FV        ++ L
Sbjct: 70  ---------------------------------VDAVDENGRTALLFVAGLGSDKCVRLL 96

Query: 473 IEWADVDLDEQDA-DGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNR 531
            E A  DLD +D   G +A  +AA     E    L+  GA+I+++++ G TA+ LA    
Sbjct: 97  AE-AGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREIL 155

Query: 532 NGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPL 591
                    +++    G +       +         ++         ++      G    
Sbjct: 156 KTTPKG-NPMQFGRRIGLEKVI---NVLEGQVFEYAEVD--------EIVEKRGKGKDVE 203

Query: 592 MLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENG 631
            L      G    +     A  +      E  L  A    
Sbjct: 204 YLVRWKDGGDCEWVKGVHVA--EDVAKDYEDGLEYAVAES 241

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  109 bits (275), Expect = 4e-27
 Identities = 45/289 (15%), Positives = 81/289 (28%), Gaps = 59/289 (20%)

Query: 311 HNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLI 370
             G           ++ +       A D     +T       P   AAR    + L +L+
Sbjct: 13  GEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYET-------PWWTAARKADEQALSQLL 65

Query: 371 SAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTL 430
               ++++    G TA +  A    ++C++ LA  GADL          +        T 
Sbjct: 66  E-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL----------DHRDMRGGLT- 113

Query: 431 GFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSA 490
                                     L         + ++ L+E    D++ +D  G +A
Sbjct: 114 -------------------------ALHMAAGYVRPEVVEALVE-LGADIEVEDERGLTA 147

Query: 491 AMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQK 550
             +A            +  G  I L+       +   ++    EV E  I+E       K
Sbjct: 148 LELAREILKTTPKGNPMQFGRRIGLEKV---INVLEGQVFEYAEVDE--IVE-------K 195

Query: 551 GSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGH 599
              G    +    +   D          +  A D +    L  A     
Sbjct: 196 RGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDYE--DGLEYAVAESV 242

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  103 bits (259), Expect = 6e-25
 Identities = 48/278 (17%), Positives = 75/278 (26%), Gaps = 99/278 (35%)

Query: 383 GETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRS 442
           G    +I  +  H       +   AD   +                T             
Sbjct: 15  GAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEY-----------ET------------- 47

Query: 443 GNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEA 502
                        P     +  D  AL +L+E  DVD    D +G +A +  A  G  + 
Sbjct: 48  -------------PWWTAARKADEQALSQLLEDRDVD--AVDENGRTALLFVAGLGSDKC 92

Query: 503 FRLLLHAGANIKLQN-KYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRA 561
            RLL  AGA++  ++ + G TA                                  LH A
Sbjct: 93  VRLLAEAGADLDHRDMRGGLTA----------------------------------LHMA 118

Query: 562 AKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENA--- 618
           A     ++V  LV    D+   D  G T L LA +    +     +  G +  +E     
Sbjct: 119 AGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINV 178

Query: 619 -------------------RNETALALARENGNGNEAE 637
                              + +    L R    G+   
Sbjct: 179 LEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEW 216

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 81.5 bits (202), Expect = 2e-17
 Identities = 41/273 (15%), Positives = 77/273 (28%), Gaps = 66/273 (24%)

Query: 298 LHMLFQHISPNILHNGRTLIHHAILCNNARAVELLLN----CAVDKEFPVQTYSKTELRP 353
             +   +I+ +++    T    A    + +A+  LL      AVD+        +T    
Sbjct: 30  SWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLEDRDVDAVDE------NGRT---A 80

Query: 354 IHLAARLGSAKILRRLISAGCNINSRTA-AGETAAMICARYKHEECLKFLASEGADLGLI 412
           +   A LGS K +R L  AG +++ R    G TA  + A Y   E ++ L   GAD+ + 
Sbjct: 81  LLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVE 140

Query: 413 NYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKL 472
           +  G            T                           L    +          
Sbjct: 141 DERG-----------LT--------------------------ALELAREILKTTPKGNP 163

Query: 473 IEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRN 532
           +++    +  +        +      + E           I  +   G+    L      
Sbjct: 164 MQFG-RRIGLEKVI---NVLEGQVFEYAE--------VDEIVEKRGKGKDVEYLVRWKDG 211

Query: 533 GEVLEQVILEYALEEGQKGSAGFYALHRAAKRG 565
           G+      +  A +  +        L  A    
Sbjct: 212 GDCEWVKGVHVAEDVAKDYED---GLEYAVAES 241

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 78.4 bits (194), Expect = 2e-16
 Identities = 30/152 (19%), Positives = 48/152 (31%), Gaps = 39/152 (25%)

Query: 482 EQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVIL 541
               +G    +I    GH  ++    +  A++       ET                   
Sbjct: 10  RTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYET------------------- 47

Query: 542 EYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGS 601
                              AA++ D   +  L+    DV+A D +G T L+  A  G   
Sbjct: 48  ---------------PWWTAARKADEQALSQLLEDR-DVDAVDENGRTALLFVAGLGSDK 91

Query: 602 VCQLLISSGAKCDIENARN-ETALALARENGN 632
             +LL  +GA  D  + R   TAL +A     
Sbjct: 92  CVRLLAEAGADLDHRDMRGGLTALHMAAGYVR 123

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 72.3 bits (178), Expect = 2e-14
 Identities = 29/190 (15%), Positives = 51/190 (26%), Gaps = 23/190 (12%)

Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
           NGRT +       + + V LL     D +        T    +H+AA     +++  L+ 
Sbjct: 76  NGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLT---ALHMAAGYVRPEVVEALVE 132

Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLG 431
            G +I      G TA  +                G  +GL          + + +     
Sbjct: 133 LGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYA----- 187

Query: 432 FQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEW-ADVDLDEQDADGFSA 490
               V +       I             V   +  D         A+     +D +    
Sbjct: 188 ---EVDE-------IVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAED--VAKDYE--DG 233

Query: 491 AMIAAAAGHV 500
              A A   +
Sbjct: 234 LEYAVAESVI 243

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 53.0 bits (128), Expect = 8e-08
 Identities = 23/136 (16%), Positives = 40/136 (29%), Gaps = 17/136 (12%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKAGACQ 147
           TAL +AA      +V  L+ LGA++  +  RG   TA   A            ++ G   
Sbjct: 113 TALHMAAGYVRPEVVEALVELGADIEVEDERGL--TALELAREILKTTPKGNPMQFGRRI 170

Query: 148 EACEE-ALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDA 206
              +   +LE      A   E++                   ++   +          + 
Sbjct: 171 GLEKVINVLEGQVFEYAEVDEIVEKRG-----KGKDVEYLVRWKDGGDCEWVKGVHVAED 225

Query: 207 NAIDRVLLQSSKPALH 222
            A D       +  L 
Sbjct: 226 VAKDY------EDGLE 235

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 52.6 bits (127), Expect = 1e-07
 Identities = 28/124 (22%), Positives = 47/124 (37%), Gaps = 6/124 (4%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATT--AAVREDHLEILDLLIKAGACQE 148
           TAL   A  G+   VR L   GA+++ +  RG  T    A      E+++ L++ GA  E
Sbjct: 79  TALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIE 138

Query: 149 ACEE----ALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGV 204
             +E    AL     + +  P    M          V  ++      +  V + + K G 
Sbjct: 139 VEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGK 198

Query: 205 DANA 208
             + 
Sbjct: 199 GKDV 202

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 32/178 (17%), Positives = 58/178 (32%), Gaps = 34/178 (19%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATT--AAVREDHLEILDLLIKAGACQE 148
               +    G+         + A+V  +    Y T    A R+   + L  L++     +
Sbjct: 17  MEYLIEWKDGHSPSWVPSSYIAADVVSE----YETPWWTAARKADEQALSQLLE-DRDVD 71

Query: 149 ACEE----ALLETSYLGQARPAELLM-------ATDLIRPQVSVHALVSACFRGFVNVVD 197
           A +E    ALL  + LG  +   LL          D+     ++H    A       VV+
Sbjct: 72  AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM---AAGYVRPEVVE 128

Query: 198 TLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIK 255
            L++ G D    D         AL           A    + +     +Q G ++ ++
Sbjct: 129 ALVELGADIEVEDE----RGLTALEL---------AREILKTTPKGNPMQFGRRIGLE 173

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 47.6 bits (114), Expect = 4e-06
 Identities = 9/57 (15%), Positives = 17/57 (29%), Gaps = 3/57 (5%)

Query: 581 NASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAE 637
           + +  +G    ++  K GH           A  D+  +  ET    A    +     
Sbjct: 9   SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAA--DV-VSEYETPWWTAARKADEQALS 62

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  107 bits (270), Expect = 3e-27
 Identities = 52/154 (33%), Positives = 69/154 (44%), Gaps = 15/154 (9%)

Query: 486 DGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYAL 545
              +    AAA G +E    LL    N+  QN +G TA+ + +L       E  I    L
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGN----PE--IARRLL 57

Query: 546 EEG----QKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGS 601
             G     K   GF  +H AA+ G  D + TL+    DVN  D +G  PL LAAK GH  
Sbjct: 58  LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLR 117

Query: 602 VCQLLISSGAKCDIENARN---ETALALARENGN 632
           V + L+   A  ++   RN   +TA  LAR  G 
Sbjct: 118 VVEFLVKHTA-SNV-GHRNHKGDTACDLARLYGR 149

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  101 bits (254), Expect = 5e-25
 Identities = 43/162 (26%), Positives = 66/162 (40%), Gaps = 14/162 (8%)

Query: 456 PLMFVTQANDVDALKKLIEW-ADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIK 514
            L       D++ L  L++   +V+   Q+  G +A +     G+ E  R LL  GAN  
Sbjct: 8   ELASAAARGDLEQLTSLLQNNVNVN--AQNGFGRTA-LQVMKLGNPEIARRLLLRGANPD 64

Query: 515 LQNKYGETAITLAELNRNGEVLEQVILEYALEEG----QKGSAGFYALHRAAKRGDFDLV 570
           L+++ G   I  A      +      L+  LE       + + G   LH AAK G   +V
Sbjct: 65  LKDRTGFAVIHDAARAGFLD-----TLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVV 119

Query: 571 HTLVSRC-YDVNASDADGYTPLMLAAKSGHGSVCQLLISSGA 611
             LV     +V   +  G T   LA   G   V  L+ ++GA
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 70.9 bits (175), Expect = 1e-14
 Identities = 31/200 (15%), Positives = 62/200 (31%), Gaps = 42/200 (21%)

Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
                +  A    +   +  LL   V+       + +T    + +    G+ +I RRL+ 
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVNVN-AQNGFGRT---ALQVMKL-GNPEIARRLLL 58

Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLG 431
            G N + +   G       AR    + L+ L    AD   +N          +       
Sbjct: 59  RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD---VN---------IE------- 99

Query: 432 FQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAA 491
                             +     PL    +   +  ++ L++    ++  ++  G +A 
Sbjct: 100 ------------------DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTAC 141

Query: 492 MIAAAAGHVEAFRLLLHAGA 511
            +A   G  E   L+   GA
Sbjct: 142 DLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 52.0 bits (126), Expect = 5e-08
 Identities = 34/161 (21%), Positives = 52/161 (32%), Gaps = 43/161 (26%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA--AVREDHLEILDLLIKAGACQE 148
             L  AA  G+L  +  LL    NVN +   G   TA   ++  + EI   L+  GA  +
Sbjct: 7   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGR--TALQVMKLGNPEIARRLLLRGANPD 64

Query: 149 ACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDANA 208
             +         G A                    +  A   GF++ + TL++   D N 
Sbjct: 65  LKDRT-------GFA-------------------VIHDAARAGFLDTLQTLLEFQADVNI 98

Query: 209 IDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAG 249
            D             N     L  A     + VV  L++  
Sbjct: 99  ED-------------NEGNLPLHLAAKEGHLRVVEFLVKHT 126

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 44.7 bits (107), Expect = 2e-05
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 6/59 (10%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGA-NVNQKLFRGYATTA---AVREDHLEILDLLIKAGA 145
             L LAA  G+L +V  L+   A NV  +  +G   TA   A      E++ L+   GA
Sbjct: 105 LPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGD--TACDLARLYGRNEVVSLMQANGA 161

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  106 bits (267), Expect = 6e-27
 Identities = 41/177 (23%), Positives = 62/177 (35%), Gaps = 36/177 (20%)

Query: 456 PLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKL 515
            L       DV  +++L+    V  D  +  G +A +     G       LL  GA+  +
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTA-LQVMMFGSTAIALELLKQGASPNV 63

Query: 516 QNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVS 575
           Q+  G +                                   +H AA+ G  D +  LV 
Sbjct: 64  QDTSGTSP----------------------------------VHDAARTGFLDTLKVLVE 89

Query: 576 RCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGN 632
              DVN  D  G  P+ LA + GH +V   L  + +     +AR  T L LA + G 
Sbjct: 90  HGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGA 145

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 82.5 bits (205), Expect = 1e-18
 Identities = 36/227 (15%), Positives = 62/227 (27%), Gaps = 75/227 (33%)

Query: 383 GETAAMICARYKHEECLK-FLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIR 441
                   A     + ++  L  E      +N  G            T            
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFG-----------KT------------ 38

Query: 442 SGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVE 501
                          L  V          +L++      + QD  G S    AA  G ++
Sbjct: 39  --------------ALQ-VMMFGSTAIALELLK-QGASPNVQDTSGTSPVHDAARTGFLD 82

Query: 502 AFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRA 561
             ++L+  GA++ + +  G                                     +H A
Sbjct: 83  TLKVLVEHGADVNVPDGTGAL----------------------------------PIHLA 108

Query: 562 AKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLIS 608
            + G   +V  L +   D++  DA G TPL LA + G   +  +L  
Sbjct: 109 VQEGHTAVVSFLAAES-DLHRRDARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 68.6 bits (169), Expect = 8e-14
 Identities = 33/201 (16%), Positives = 61/201 (30%), Gaps = 55/201 (27%)

Query: 313 GRTLIHHAILCNNARAVELLLNC------AVDKEFPVQTYSKTELRPIHLAARLGSAKIL 366
               +  A    + + V  LL+       A+++      + KT    + +    GS  I 
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNR------FGKT---ALQVMMF-GSTAIA 51

Query: 367 RRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSS 426
             L+  G + N +  +G +     AR    + LK L   GAD+ + +  G          
Sbjct: 52  LELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTG---------- 101

Query: 427 RWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDAD 486
                                        P+    Q      +  L   +D+    +DA 
Sbjct: 102 -AL--------------------------PIHLAVQEGHTAVVSFLAAESDL--HRRDAR 132

Query: 487 GFSAAMIAAAAGHVEAFRLLL 507
           G +   +A   G  +   +L 
Sbjct: 133 GLTPLELALQRGAQDLVDILQ 153

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 52.8 bits (128), Expect = 3e-08
 Identities = 22/106 (20%), Positives = 38/106 (35%), Gaps = 6/106 (5%)

Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
            G+T +   +   +      LL               +   P+H AAR G    L+ L+ 
Sbjct: 35  FGKTALQVMM-FGSTAIALELLKQGASPN----VQDTSGTSPVHDAARTGFLDTLKVLVE 89

Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQ 417
            G ++N     G     +  +  H   + FLA+  +DL   +  G 
Sbjct: 90  HGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-ESDLHRRDARGL 134

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 49.7 bits (120), Expect = 3e-07
 Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
           +G + +H A        +++L+    D   P      T   PIHLA + G   ++  L +
Sbjct: 67  SGTSPVHDAARTGFLDTLKVLVEHGADVNVP----DGTGALPIHLAVQEGHTAVVSFLAA 122

Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLAS 404
              +++ R A G T   +  +   ++ +  L  
Sbjct: 123 -ESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 49.3 bits (119), Expect = 4e-07
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 6/58 (10%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKAGA 145
           TAL +    G+  +  +LL  GA+ N +   G   +    A R   L+ L +L++ GA
Sbjct: 38  TALQVMMF-GSTAIALELLKQGASPNVQDTSGT--SPVHDAARTGFLDTLKVLVEHGA 92

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 47.8 bits (115), Expect = 1e-06
 Identities = 25/123 (20%), Positives = 41/123 (33%), Gaps = 31/123 (25%)

Query: 91  TALFLAAHAGNLTLVRKLL-SLGANVNQKLFRGYATTA--AVREDHLEILDLLIKAGACQ 147
             L  AA  G++  VR+LL     + +     G   TA   +      I   L+K GA  
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGK--TALQVMMFGSTAIALELLKQGASP 61

Query: 148 EACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDAN 207
              + +       G +                    +  A   GF++ +  L++ G D N
Sbjct: 62  NVQDTS-------GTS-------------------PVHDAARTGFLDTLKVLVEHGADVN 95

Query: 208 AID 210
             D
Sbjct: 96  VPD 98

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 43.9 bits (105), Expect = 2e-05
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 6/58 (10%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKAGA 145
           + +  AA  G L  ++ L+  GA+VN     G        AV+E H  ++  L    +
Sbjct: 70  SPVHDAARTGFLDTLKVLVEHGADVNVPDGTGA--LPIHLAVQEGHTAVVSFLAA-ES 124

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  108 bits (273), Expect = 7e-27
 Identities = 49/287 (17%), Positives = 85/287 (29%), Gaps = 67/287 (23%)

Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
            G+  +      N  +     +   +  +F     +   L  +  ++  G   +++R+I 
Sbjct: 4   TGQVSLPPGKRTNLRKTGSERIAHGMRVKF-----NPLPLALLLDSSLEGEFDLVQRIIY 58

Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSR-WTL 430
              + +     G TA        H E +KFL   G +   +N         A  S  WT 
Sbjct: 59  EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN---VN---------AADSDGWT- 105

Query: 431 GFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEW-ADVD-LDEQDADGF 488
                                    PL      N+V   K L+E  A V  +   D    
Sbjct: 106 -------------------------PLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTA 140

Query: 489 SAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEG 548
           +        G+ +  + L      + + NK    A+   E   + E+             
Sbjct: 141 ADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPM----------- 189

Query: 549 QKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAA 595
            K       +H    R D D +    +R      +D +GY P  L  
Sbjct: 190 -KEGDCMTIIH----REDEDEIEWWWARL-----NDKEGYVPRNLLG 226

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  105 bits (265), Expect = 8e-26
 Identities = 35/159 (22%), Positives = 57/159 (35%), Gaps = 19/159 (11%)

Query: 484 DADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEY 543
           +  G  +          +     +  G  +K  N      +  + L    ++++      
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQ-----R 55

Query: 544 ALEEG----QKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGH 599
            + E          G  ALH A   G  ++V  LV    +VNA+D+DG+TPL  AA   +
Sbjct: 56  IIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNN 115

Query: 600 GSVCQLLISSGAKCDIENARNE------TALALARENGN 632
             VC+ L+ SGA   +  A                E G 
Sbjct: 116 VQVCKFLVESGA--AV-FAMTYSDMQTAADKCEEMEEGY 151

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  104 bits (261), Expect = 3e-25
 Identities = 33/283 (11%), Positives = 67/283 (23%), Gaps = 73/283 (25%)

Query: 353 PIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLI 412
            +    R    K     I+ G  +           +  +     + ++ +  E  D  L 
Sbjct: 8   SLPPGKRTNLRKTGSERIAHGMRVK-FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLP 66

Query: 413 NYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKL 472
           N  G            T                           L     A   + +K L
Sbjct: 67  NDEG-----------IT--------------------------ALHNAVCAGHTEIVKFL 89

Query: 473 IEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRN 532
           ++   V+++  D+DG++    AA+  +V+  + L+ +GA +                   
Sbjct: 90  VQ-FGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTY-------------- 134

Query: 533 GEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLM 592
                                         + G       L      +   +      L 
Sbjct: 135 -----------------SDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALW 177

Query: 593 LAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNE 635
                      +L +  G    I +  +E  +       N  E
Sbjct: 178 DYEPQNDD---ELPMKEGDCMTIIHREDEDEIEWWWARLNDKE 217

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 59.9 bits (146), Expect = 4e-10
 Identities = 24/124 (19%), Positives = 44/124 (35%), Gaps = 28/124 (22%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKAGACQ 147
           TAL  A  AG+  +V+ L+  G NVN     G+  T    A   +++++   L+++GA  
Sbjct: 72  TALHNAVCAGHTEIVKFLVQFGVNVNAADSDGW--TPLHCAASCNNVQVCKFLVESGAAV 129

Query: 148 EACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDAN 207
            A   + ++T             A D                 G+      L        
Sbjct: 130 FAMTYSDMQT-------------AADKC----------EEMEEGYTQCSQFLYGVQEKMG 166

Query: 208 AIDR 211
            +++
Sbjct: 167 IMNK 170

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 52.6 bits (127), Expect = 1e-07
 Identities = 22/181 (12%), Positives = 41/181 (22%), Gaps = 35/181 (19%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTAAVREDHLEILDLLIKAGACQEAC 150
            +L             + ++ G  V            +  E   +++  +I         
Sbjct: 7   VSLPPGKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLP 66

Query: 151 EE----ALLETSYLGQARPAELLMATDLIRPQVSVHA------------LVSACFRGFVN 194
            +    AL      G     + L         V                L  A     V 
Sbjct: 67  NDEGITALHNAVCAGHTEIVKFL---------VQFGVNVNAADSDGWTPLHCAASCNNVQ 117

Query: 195 VVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDI 254
           V   L++ G    A+    +Q++                +        + L     KM I
Sbjct: 118 VCKFLVESGAAVFAMTYSDMQTAAD-KCE---------EMEEGYTQCSQFLYGVQEKMGI 167

Query: 255 K 255
            
Sbjct: 168 M 168

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 50.3 bits (121), Expect = 6e-07
 Identities = 25/241 (10%), Positives = 57/241 (23%), Gaps = 59/241 (24%)

Query: 183 ALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVV 242
           +L               I  G+                         L+ + +  +  +V
Sbjct: 8   SLPPGKRTNLRKTGSERIAHGMRVKF--------------NPLPLALLLDSSLEGEFDLV 53

Query: 243 RLLLQAGVKMDIKVRMG-------AWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSG 295
           + ++       +    G         +   +                     V++    G
Sbjct: 54  QRIIYEVDDPSLPNDEGITALHNAVCAGHTEI--------------------VKFLVQFG 93

Query: 296 AILHMLFQHISPNI---LHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELR 352
                       N+     +G T +H A  CNN +  + L+           +  +T   
Sbjct: 94  V-----------NVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAA- 141

Query: 353 PIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLI 412
                   G  +  + L      +         A      Y+ +   +    EG  + +I
Sbjct: 142 DKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWD---YEPQNDDELPMKEGDCMTII 198

Query: 413 N 413
           +
Sbjct: 199 H 199

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  105 bits (266), Expect = 9e-27
 Identities = 42/181 (23%), Positives = 66/181 (36%), Gaps = 34/181 (18%)

Query: 450 NASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHA 509
           N+     L+   +A DV+ +KKL     V+  + +    +    AA    V     LL  
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64

Query: 510 GANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDL 569
           GA++  ++K G                                     LH A   G +++
Sbjct: 65  GADVHAKDKGGLVP----------------------------------LHNACSYGHYEV 90

Query: 570 VHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARE 629
              LV     VN +D   +TPL  AA  G   +C+LL+  GA    +N    T L L ++
Sbjct: 91  AELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD 150

Query: 630 N 630
            
Sbjct: 151 G 151

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 84.7 bits (211), Expect = 3e-19
 Identities = 34/150 (22%), Positives = 48/150 (32%), Gaps = 35/150 (23%)

Query: 484 DADGFSAAMIAAAAGHVEAFRLLL-HAGANIKLQNKYGETAITLAELNRNGEVLEQVILE 542
           +++     + AA AG VE  + L      N +       T                    
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTP------------------- 45

Query: 543 YALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSV 602
                          LH AA      +V  L+    DV+A D  G  PL  A   GH  V
Sbjct: 46  ---------------LHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEV 90

Query: 603 CQLLISSGAKCDIENARNETALALARENGN 632
            +LL+  GA  ++ +    T L  A   G 
Sbjct: 91  AELLVKHGAVVNVADLWKFTPLHEAAAKGK 120

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 74.7 bits (185), Expect = 7e-16
 Identities = 35/187 (18%), Positives = 64/187 (34%), Gaps = 42/187 (22%)

Query: 353 PIHLAARLGSAKILRRLISA-GCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGL 411
            +  AA+ G  + +++L +    N         T     A Y     +++L   GAD   
Sbjct: 11  QLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD--- 67

Query: 412 INYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKK 471
           ++         AK                         +     PL         +  + 
Sbjct: 68  VH---------AK-------------------------DKGGLVPLHNACSYGHYEVAEL 93

Query: 472 LIE-WADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELN 530
           L++  A V  +  D   F+    AAA G  E  +LLL  GA+   +N+ G T + L +  
Sbjct: 94  LVKHGAVV--NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDG 151

Query: 531 RNGEVLE 537
            + ++ +
Sbjct: 152 -DTDIQD 157

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 67.4 bits (166), Expect = 2e-13
 Identities = 31/206 (15%), Positives = 60/206 (29%), Gaps = 46/206 (22%)

Query: 308 NILHNGRTLIHHAILCNNARAVELLLNC-AVDKEFPVQTYSKTELRPIHLAARLGSAKIL 366
                    +  A    +   V+ L    +V+           +  P+H AA      ++
Sbjct: 3   MGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCR----DIEGRQSTPLHFAAGYNRVSVV 58

Query: 367 RRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSS 426
             L+  G +++++   G         Y H E  + L   GA    +N             
Sbjct: 59  EYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV---VN---------VA-- 104

Query: 427 RWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEW-ADVDLDEQDA 485
                                  +  +F+PL         +  K L++  AD    +++ 
Sbjct: 105 -----------------------DLWKFTPLHEAAAKGKYEICKLLLQHGADP--TKKNR 139

Query: 486 DGFSAAMIAAAAGHVEAFRLLLHAGA 511
           DG +  +     G  +   LL    A
Sbjct: 140 DGNT-PLDLVKDGDTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 51.6 bits (125), Expect = 7e-08
 Identities = 36/169 (21%), Positives = 54/169 (31%), Gaps = 45/169 (26%)

Query: 91  TALFLAAHAGNLTLVRKLLSL-GANVNQKLFRGYATTA---AVREDHLEILDLLIKAGAC 146
             L  AA AG++  V+KL ++   N      R    T    A   + + +++ L++ GA 
Sbjct: 10  RQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQS--TPLHFAAGYNRVSVVEYLLQHGAD 67

Query: 147 QEACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDA 206
             A           G                      L +AC  G   V + L+K G   
Sbjct: 68  VHA-------KDKGGLV-------------------PLHNACSYGHYEVAELLVKHGAVV 101

Query: 207 NAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIK 255
           N  D          LH          A    +  + +LLLQ G     K
Sbjct: 102 NVADL----WKFTPLHE---------AAAKGKYEICKLLLQHGADPTKK 137

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 46.2 bits (111), Expect = 6e-06
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA--AVREDHLEILDLLIKAGA 145
           T L  AA  G   + + LL  GA+  +K   G   T    V++   +I DLL    A
Sbjct: 110 TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGN--TPLDLVKDGDTDIQDLLRGDAA 164

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  105 bits (265), Expect = 2e-26
 Identities = 50/245 (20%), Positives = 74/245 (30%), Gaps = 78/245 (31%)

Query: 376 INSRTAA-GETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQ 434
           I SRTA  G    +I  +  H       +   AD   +                T     
Sbjct: 6   IGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEY-----------ET----- 46

Query: 435 AVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIA 494
                                P     +  D  AL +L+E  DVD    D +G +A +  
Sbjct: 47  ---------------------PWWTAARKADEQALSQLLEDRDVD--AVDENGRTALLFV 83

Query: 495 AAAGHVEAFRLLLHAGANIKLQN-KYGETAITLAELNRNGEVLEQVILEYALEEGQKGSA 553
           A  G  +  RLL  AGA++  ++ + G TA                              
Sbjct: 84  AGLGSDKCVRLLAEAGADLDHRDMRGGLTA------------------------------ 113

Query: 554 GFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKC 613
               LH AA     ++V  LV    D+   D  G T L LA +    +     +  G + 
Sbjct: 114 ----LHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRI 169

Query: 614 DIENA 618
            +E  
Sbjct: 170 GLEKV 174

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  103 bits (260), Expect = 9e-26
 Identities = 39/164 (23%), Positives = 59/164 (35%), Gaps = 14/164 (8%)

Query: 482 EQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVIL 541
               +G    +I    GH  ++    +  A++       ET    A    + + L Q++ 
Sbjct: 9   RTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQLL- 64

Query: 542 EYALEEG----QKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDA-DGYTPLMLAAK 596
                E          G  AL   A  G    V  L     D++  D   G T L +AA 
Sbjct: 65  -----EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 119

Query: 597 SGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVI 640
                V + L+  GA  ++E+ R  TAL LARE        N +
Sbjct: 120 YVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPM 163

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 86.0 bits (214), Expect = 1e-19
 Identities = 34/207 (16%), Positives = 63/207 (30%), Gaps = 45/207 (21%)

Query: 311 HNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLI 370
             G           ++ +       A D    V +  +T   P   AAR    + L +L+
Sbjct: 12  GEGAMEYLIEWKDGHSPSWVPSSYIAAD----VVSEYET---PWWTAARKADEQALSQLL 64

Query: 371 SAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTL 430
               ++++    G TA +  A    ++C++ LA  GADL          +        T 
Sbjct: 65  E-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL----------DHRDMRGGLT- 112

Query: 431 GFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSA 490
                                     L         + ++ L+E    D++ +D  G +A
Sbjct: 113 -------------------------ALHMAAGYVRPEVVEALVE-LGADIEVEDERGLTA 146

Query: 491 AMIAAAAGHVEAFRLLLHAGANIKLQN 517
             +A            +  G  I L+ 
Sbjct: 147 LELAREILKTTPKGNPMQFGRRIGLEK 173

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 63.7 bits (156), Expect = 7e-12
 Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 14/106 (13%)

Query: 308 NILHNGRTLIHHAILCNNARAVELLLN----CAVDKEFPVQTYSKTELRPIHLAARLGSA 363
           +++    T    A    + +A+  LL      AVD+        +T    +   A LGS 
Sbjct: 39  DVVSEYETPWWTAARKADEQALSQLLEDRDVDAVDE------NGRT---ALLFVAGLGSD 89

Query: 364 KILRRLISAGCNINSR-TAAGETAAMICARYKHEECLKFLASEGAD 408
           K +R L  AG +++ R    G TA  + A Y   E ++ L   GAD
Sbjct: 90  KCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD 135

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 50.6 bits (122), Expect = 3e-07
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYAT--TAAVREDHLEILDLLIKAGA 145
           TAL   A  G+   VR L   GA+++ +  RG  T    A      E+++ L++ GA
Sbjct: 78  TALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGA 134

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 50.2 bits (121), Expect = 3e-07
 Identities = 9/58 (15%), Positives = 17/58 (29%), Gaps = 3/58 (5%)

Query: 580 VNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAE 637
            + +  +G    ++  K GH           A  D+  +  ET    A    +     
Sbjct: 7   GSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAA--DV-VSEYETPWWTAARKADEQALS 61

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 49.4 bits (119), Expect = 6e-07
 Identities = 33/185 (17%), Positives = 56/185 (30%), Gaps = 48/185 (25%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATT--AAVREDHLEILDLLIKAGACQE 148
               +    G+         + A+V  +    Y T    A R+   + L  L++     +
Sbjct: 16  MEYLIEWKDGHSPSWVPSSYIAADVVSE----YETPWWTAARKADEQALSQLLE-DRDVD 70

Query: 149 ACEE----ALLETSYLGQARPAELLMA--------------TDLIRPQVSVHALVSACFR 190
           A +E    ALL  + LG  +   LL                T          AL  A   
Sbjct: 71  AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLT----------ALHMAAGY 120

Query: 191 GFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGV 250
               VV+ L++ G D    D                  AL  A    + +     +Q G 
Sbjct: 121 VRPEVVEALVELGADIEVED-------------ERGLTALELAREILKTTPKGNPMQFGR 167

Query: 251 KMDIK 255
           ++ ++
Sbjct: 168 RIGLE 172

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  102 bits (258), Expect = 5e-26
 Identities = 34/141 (24%), Positives = 54/141 (38%), Gaps = 11/141 (7%)

Query: 476 ADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEV 535
               +        +    AAA G VE  R LL AGA+    N++G   I +  +      
Sbjct: 1   GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGS---- 56

Query: 536 LEQVILEYALEEG----QKGSAGF-YALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTP 590
            +  + E  L  G        A     +H AA+ G  D +  L      ++  DA G  P
Sbjct: 57  AQ--VAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLP 114

Query: 591 LMLAAKSGHGSVCQLLISSGA 611
           + LA + GH  + + L ++  
Sbjct: 115 VDLAEEQGHRDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 72.5 bits (179), Expect = 3e-15
 Identities = 30/160 (18%), Positives = 48/160 (30%), Gaps = 38/160 (23%)

Query: 353 PIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLI 412
            +  AA  G  + +R+L+ AG + N+    G    +        +  + L   GA+    
Sbjct: 15  GLATAAARGQVETVRQLLEAGADPNALNRFGRR-PIQVMMMGSAQVAELLLLHGAEPNCA 73

Query: 413 NYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKL 472
           + A             T                          P+    +   +D L  L
Sbjct: 74  DPAT-----------LT-------------------------RPVHDAAREGFLDTLVVL 97

Query: 473 IEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGAN 512
              A   LD  DA G     +A   GH +  R L  A  +
Sbjct: 98  HR-AGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 64.0 bits (157), Expect = 2e-12
 Identities = 24/168 (14%), Positives = 48/168 (28%), Gaps = 42/168 (25%)

Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLG 431
               I+    + +      A     E ++ L   GAD   +N  G               
Sbjct: 1   GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFG-----------RR-- 47

Query: 432 FQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEW-ADVDLDEQDADGFSA 490
                                   P+  +         + L+   A+   +  D    + 
Sbjct: 48  ------------------------PIQVMMM-GSAQVAELLLLHGAEP--NCADPATLTR 80

Query: 491 A-MIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLE 537
               AA  G ++   +L  AGA + + + +G   + LAE   + ++  
Sbjct: 81  PVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIAR 128

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 60.1 bits (147), Expect = 5e-11
 Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 4/97 (4%)

Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
            GR  I   ++  +A+  ELLL    +        + T  RP+H AAR G    L  L  
Sbjct: 44  FGRRPIQVMMM-GSAQVAELLLLHGAEPN-CADPATLT--RPVHDAAREGFLDTLVVLHR 99

Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGAD 408
           AG  ++   A G     +     H +  ++L +   D
Sbjct: 100 AGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 58.6 bits (143), Expect = 2e-10
 Identities = 28/162 (17%), Positives = 45/162 (27%), Gaps = 44/162 (27%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKAGACQ 147
             L  AA  G +  VR+LL  GA+ N     G         +     ++ +LL+  GA  
Sbjct: 14  AGLATAAARGQVETVRQLLEAGADPNALNRFGR--RPIQVMMM-GSAQVAELLLLHGAEP 70

Query: 148 EACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDAN 207
                           RP                  +  A   GF++ +  L + G   +
Sbjct: 71  NC-------ADPATLTRP------------------VHDAAREGFLDTLVVLHRAGARLD 105

Query: 208 AIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAG 249
             D              +    +  A       + R L  A 
Sbjct: 106 VCD-------------AWGRLPVDLAEEQGHRDIARYLHAAT 134

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 58.2 bits (142), Expect = 2e-10
 Identities = 23/99 (23%), Positives = 33/99 (33%), Gaps = 6/99 (6%)

Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
           +    +  A        V  LL    D        ++   RPI +    GSA++   L+ 
Sbjct: 11  SSDAGLATAAARGQVETVRQLLEAGADPNAL----NRFGRRPIQVMMM-GSAQVAELLLL 65

Query: 372 AGCNINSRTAAGETAAMICA-RYKHEECLKFLASEGADL 409
            G   N    A  T  +  A R    + L  L   GA L
Sbjct: 66  HGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARL 104

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 56.3 bits (137), Expect = 1e-09
 Identities = 8/49 (16%), Positives = 16/49 (32%)

Query: 579 DVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALA 627
            ++         L  AA  G     + L+ +GA  +  N      + + 
Sbjct: 4   GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVM 52

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  102 bits (257), Expect = 9e-25
 Identities = 48/205 (23%), Positives = 86/205 (41%), Gaps = 27/205 (13%)

Query: 455 SPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIK 514
           SPL+   + NDV AL KL+++   ++ ++ A G +A  IAA   ++EA  +L+ A   + 
Sbjct: 5   SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64

Query: 515 L-----QNKYGETAITLAELNRNGEVLEQVI------------LEYALEEGQKGSAGFYA 557
                 +   G+TA+ +A +N+N  ++  ++              +          G + 
Sbjct: 65  FEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHP 124

Query: 558 LHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGH----GSVCQLLISSGAK- 612
           L  AA  G  ++V  L+    D+ A D+ G T L +     +      +  LL+S     
Sbjct: 125 LSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGD 184

Query: 613 -----CDIENARNETALALARENGN 632
                  + N +  T   LA   GN
Sbjct: 185 HLKSLELVPNNQGLTPFKLAGVEGN 209

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 69.6 bits (171), Expect = 2e-13
 Identities = 52/255 (20%), Positives = 85/255 (33%), Gaps = 52/255 (20%)

Query: 91  TALFLAAHAGNLTLVRKLL-SLGANVNQKLFRGYATTA---AVREDHLEILDLLIKAGAC 146
           + L LAA   ++  + KLL   G  V+Q+   G   TA   A   D+LE   +L++A   
Sbjct: 5   SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGE--TALHIAALYDNLEAAMVLMEAAP- 61

Query: 147 QEACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDA 206
            E   E +    Y GQ         T          AL  A     VN+V  L+  G   
Sbjct: 62  -ELVFEPMTSELYEGQ---------T----------ALHIAVINQNVNLVRALLARGASV 101

Query: 207 NAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMG------- 259
           +A     +   +P     +  + L  A       +VRLL++ G  +  +  +G       
Sbjct: 102 SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHIL 161

Query: 260 AWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHH 319
               +     ++                     S     H+    + PN  + G T    
Sbjct: 162 ILQPNKTFACQM----------------YNLLLSYDGGDHLKSLELVPN--NQGLTPFKL 203

Query: 320 AILCNNARAVELLLN 334
           A +  N    + L+ 
Sbjct: 204 AGVEGNIVMFQHLMQ 218

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 65.7 bits (161), Expect = 4e-12
 Identities = 27/135 (20%), Positives = 43/135 (31%), Gaps = 16/135 (11%)

Query: 287 AVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCNNARAVELLLN-----CAVDKEF 341
           A      +   L              G+T +H A++  N   V  LL       A     
Sbjct: 52  AAMVLMEAAPELVFEPMTSELY---EGQTALHIAVINQNVNLVRALLARGASVSARATGS 108

Query: 342 PVQTYSKTELR----PIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEE 397
                    +     P+  AA +GS +I+R LI  G +I ++ + G T   I     ++ 
Sbjct: 109 VFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKT 168

Query: 398 ----CLKFLASEGAD 408
                   L S    
Sbjct: 169 FACQMYNLLLSYDGG 183

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 53.0 bits (128), Expect = 7e-08
 Identities = 31/246 (12%), Positives = 60/246 (24%), Gaps = 83/246 (33%)

Query: 183 ALVSACFRGFVNVVDTLIKCGVD-----ANAIDRVLLQSSKPALHANFDCNALVGAVVSR 237
           AL  A     +     L++   +       +         + ALH          AV+++
Sbjct: 40  ALHIAALYDNLEAAMVLMEAAPELVFEPMTSELY----EGQTALHI---------AVINQ 86

Query: 238 QISVVRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAI 297
            +++VR LL  G  +  +           TG            Y                
Sbjct: 87  NVNLVRALLARGASVSAR----------ATGSVFHYRPHNLIYY---------------- 120

Query: 298 LHMLFQHISPNILHNGRTLIHHAILCNNARAVELLLN-----CAVDKEFPVQTYSKTELR 352
                          G   +  A    +   V LL+       A D          T   
Sbjct: 121 ---------------GEHPLSFAACVGSEEIVRLLIEHGADIRAQDS------LGNT--- 156

Query: 353 PIHLAARLGSAKILRR----LISAGCNINSRTAA------GETAAMICARYKHEECLKFL 402
            +H+     +     +    L+S     + ++        G T   +     +    + L
Sbjct: 157 VLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHL 216

Query: 403 ASEGAD 408
             +   
Sbjct: 217 MQKRKH 222

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 587 GYTPLMLAAKSGH-GSVCQLLISSGAKCDIENARNETALALARENGNGNEAE 637
             +PL+LAAK     ++ +LL   G +     A  ETAL +A    N   A 
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAM 54

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  101 bits (255), Expect = 3e-25
 Identities = 39/167 (23%), Positives = 57/167 (34%), Gaps = 20/167 (11%)

Query: 476 ADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEV 535
           A   ++            AAA G VE  R LL AGAN    N YG   I +  +      
Sbjct: 5   AGSSME----PSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGS---- 56

Query: 536 LEQVILEYALEEG----QKGSAGF-YALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTP 590
               + E  L  G        A     +H AA+ G  D +  L      ++  DA G  P
Sbjct: 57  AR--VAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLP 114

Query: 591 LMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAE 637
           + LA + GH  V + L ++                +    G  +  +
Sbjct: 115 VDLAEELGHRDVARYLRAAAG--GT-RGS--NHARIDAAEGPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 76.0 bits (188), Expect = 2e-16
 Identities = 34/171 (19%), Positives = 51/171 (29%), Gaps = 38/171 (22%)

Query: 353 PIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLI 412
            +  AA  G  + +R L+ AG N N+  + G    +           + L   GA+    
Sbjct: 15  WLATAAARGRVEEVRALLEAGANPNAPNSYGRR-PIQVMMMGSARVAELLLLHGAE---P 70

Query: 413 NYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKL 472
           N         A  +  T                          P+    +   +D L  L
Sbjct: 71  N--------CADPATLT-------------------------RPVHDAAREGFLDTLVVL 97

Query: 473 IEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETA 523
              A   LD +DA G     +A   GH +  R L  A    +  N     A
Sbjct: 98  HR-AGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDA 147

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 65.2 bits (160), Expect = 1e-12
 Identities = 28/234 (11%), Positives = 56/234 (23%), Gaps = 85/234 (36%)

Query: 371 SAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTL 430
           +AG ++              A     E ++ L   GA+    N  G              
Sbjct: 4   AAGSSME----PSADWLATAAARGRVEEVRALLEAGANPNAPNSYG-----------RR- 47

Query: 431 GFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEW-ADVDLDEQDADGFS 489
                                    P+  +         + L+   A+   +  D    +
Sbjct: 48  -------------------------PIQVMMM-GSARVAELLLLHGAEP--NCADPATLT 79

Query: 490 AA-MIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEG 548
                AA  G ++   +L  AGA + +++ +G                            
Sbjct: 80  RPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRL-------------------------- 113

Query: 549 QKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSV 602
                    +  A + G  D+   L +       S+        + A  G   +
Sbjct: 114 --------PVDLAEELGHRDVARYLRAAAGGTRGSN-----HARIDAAEGPSDI 154

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 60.6 bits (148), Expect = 5e-11
 Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 4/98 (4%)

Query: 311 HNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLI 370
             GR  I   ++  +AR  ELLL    +          T  RP+H AAR G    L  L 
Sbjct: 43  SYGRRPIQVMMM-GSARVAELLLLHGAEPN---CADPATLTRPVHDAAREGFLDTLVVLH 98

Query: 371 SAGCNINSRTAAGETAAMICARYKHEECLKFLASEGAD 408
            AG  ++ R A G     +     H +  ++L +    
Sbjct: 99  RAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGG 136

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 59.8 bits (146), Expect = 9e-11
 Identities = 24/107 (22%), Positives = 36/107 (33%), Gaps = 6/107 (5%)

Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
                +  A        V  LL    +   P    +    RPI +    GSA++   L+ 
Sbjct: 11  PSADWLATAAARGRVEEVRALLEAGANPNAP----NSYGRRPIQVMMM-GSARVAELLLL 65

Query: 372 AGCNINSRTAAGETAAMICA-RYKHEECLKFLASEGADLGLINYAGQ 417
            G   N    A  T  +  A R    + L  L   GA L + +  G+
Sbjct: 66  HGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGR 112

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 58.6 bits (143), Expect = 3e-10
 Identities = 31/162 (19%), Positives = 45/162 (27%), Gaps = 44/162 (27%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKAGACQ 147
             L  AA  G +  VR LL  GAN N     G         +      + +LL+  GA  
Sbjct: 14  DWLATAAARGRVEEVRALLEAGANPNAPNSYGR--RPIQVMMM-GSARVAELLLLHGAEP 70

Query: 148 EACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDAN 207
              + A          RP                  +  A   GF++ +  L + G   +
Sbjct: 71  NCADPA-------TLTRP------------------VHDAAREGFLDTLVVLHRAGARLD 105

Query: 208 AIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAG 249
             D              +    +  A       V R L  A 
Sbjct: 106 VRD-------------AWGRLPVDLAEELGHRDVARYLRAAA 134

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 50.9 bits (123), Expect = 1e-07
 Identities = 9/49 (18%), Positives = 17/49 (34%)

Query: 579 DVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALA 627
              +S       L  AA  G     + L+ +GA  +  N+     + + 
Sbjct: 4   AAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVM 52

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 99.7 bits (250), Expect = 5e-25
 Identities = 51/130 (39%), Positives = 74/130 (56%), Gaps = 9/130 (6%)

Query: 486 DGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYAL 545
           +G +   +AA  GH+E  +LLL AGA++  ++K G T + LA  N + EV++       L
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK-----LLL 55

Query: 546 EEG----QKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGS 601
           E G     K   G   LH AA+ G  ++V  L+    DVNA D +G TPL LAA++GH  
Sbjct: 56  EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 115

Query: 602 VCQLLISSGA 611
           V +LL+ +GA
Sbjct: 116 VVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 75.5 bits (187), Expect = 2e-16
 Identities = 33/79 (41%), Positives = 47/79 (59%)

Query: 554 GFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKC 613
           G   LH AA+ G  ++V  L+    DVNA D +G TPL LAA++GH  V +LL+ +GA  
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 614 DIENARNETALALARENGN 632
           + ++    T L LA  NG+
Sbjct: 62  NAKDKNGRTPLHLAARNGH 80

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 67.0 bits (165), Expect = 2e-13
 Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 38/159 (23%)

Query: 353 PIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLI 412
           P+HLAAR G  ++++ L+ AG ++N++   G T   + AR  H E +K L   GAD+   
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64

Query: 413 NYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKL 472
           +  G            T                          PL    +   ++ +K L
Sbjct: 65  DKNG-----------RT--------------------------PLHLAARNGHLEVVKLL 87

Query: 473 IEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGA 511
           +E A  D++ +D +G +   +AA  GH+E  +LLL AGA
Sbjct: 88  LE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 60.8 bits (149), Expect = 2e-11
 Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 4/97 (4%)

Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
           NGRT +H A    +   V+LLL    D         +T   P+HLAAR G  ++++ L+ 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRT---PLHLAARNGHLEVVKLLLE 56

Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGAD 408
           AG ++N++   G T   + AR  H E +K L   GAD
Sbjct: 57  AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 93

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 60.1 bits (147), Expect = 4e-11
 Identities = 42/156 (26%), Positives = 66/156 (42%), Gaps = 40/156 (25%)

Query: 383 GETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRS 442
           G T   + AR  H E +K L   GAD   +N            +  T             
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGAD---VN--------AKDKNGRT------------- 37

Query: 443 GNIIQSSNASRFSPLMFVTQANDVDALKKLIEW-ADVDLDEQDADGFSAAMIAAAAGHVE 501
                        PL    +   ++ +K L+E  ADV+   +D +G +   +AA  GH+E
Sbjct: 38  -------------PLHLAARNGHLEVVKLLLEAGADVN--AKDKNGRTPLHLAARNGHLE 82

Query: 502 AFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLE 537
             +LLL AGA++  ++K G T + LA  N + EV++
Sbjct: 83  VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 118

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 59.7 bits (146), Expect = 6e-11
 Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 4/96 (4%)

Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
           NGRT +H A    +   V+LLL    D         +T   P+HLAAR G  ++++ L+ 
Sbjct: 34  NGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRT---PLHLAARNGHLEVVKLLLE 89

Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGA 407
           AG ++N++   G T   + AR  H E +K L   GA
Sbjct: 90  AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 54.3 bits (132), Expect = 4e-09
 Identities = 50/162 (30%), Positives = 68/162 (41%), Gaps = 44/162 (27%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKAGACQ 147
           T L LAA  G+L +V+ LL  GA+VN K   G   T    A R  HLE++ LL++AGA  
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR--TPLHLAARNGHLEVVKLLLEAGADV 61

Query: 148 EACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDAN 207
            A ++        G+         T           L  A   G + VV  L++ G D N
Sbjct: 62  NAKDKN-------GR---------T----------PLHLAARNGHLEVVKLLLEAGADVN 95

Query: 208 AIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAG 249
           A D                   L  A  +  + VV+LLL+AG
Sbjct: 96  AKD-------------KNGRTPLHLAARNGHLEVVKLLLEAG 124

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 52.3 bits (127), Expect = 2e-08
 Identities = 20/47 (42%), Positives = 30/47 (63%)

Query: 586 DGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGN 632
           +G TPL LAA++GH  V +LL+ +GA  + ++    T L LA  NG+
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 47

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 50.4 bits (122), Expect = 1e-07
 Identities = 27/58 (46%), Positives = 35/58 (60%), Gaps = 5/58 (8%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKAGA 145
           T L LAA  G+L +V+ LL  GA+VN K   G   T    A R  HLE++ LL++AGA
Sbjct: 70  TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR--TPLHLAARNGHLEVVKLLLEAGA 125

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  103 bits (259), Expect = 7e-25
 Identities = 43/295 (14%), Positives = 76/295 (25%), Gaps = 70/295 (23%)

Query: 352 RPIHLAARLGSAKILRRLI--------SAGCNINSRTAAGETA---AMICARYKHEECLK 400
             +      G  + L  L+            +  +  + G+T    A++  +     C+ 
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 401 FLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFV 460
            L     D G        A    +  +                           S L   
Sbjct: 64  PLLQIDKDSGNPKPLVN-AQCTDEFYQG-------------------------HSALHIA 97

Query: 461 TQANDVDALKKLIEW-ADVD-----------LDEQDADGFSAAMIAAAAGHVEAFRLLL- 507
            +   +  +K L+E  ADV                   G     +AA     +    LL 
Sbjct: 98  IEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE 157

Query: 508 --HAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRG 565
             H  A+++  +  G T +    +                      S    AL      G
Sbjct: 158 NPHQPASLEATDSLGNTVLHALVMI------------------ADNSPENSALVIHMYDG 199

Query: 566 DFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARN 620
              +   L         S+  G TPL LAAK G   + + ++         +  +
Sbjct: 200 LLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAAHHHH 254

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 88.7 bits (220), Expect = 9e-20
 Identities = 36/215 (16%), Positives = 66/215 (30%), Gaps = 53/215 (24%)

Query: 450 NASRFSPLM---FVTQANDVDALKKLIEWA----------DVDLDEQDADGFSAAMIAAA 496
            ++  + LM      Q      +  L++            +    ++   G SA  IA  
Sbjct: 40  GSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIE 99

Query: 497 AGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFY 556
              ++  +LL+  GA++ L+                GE                      
Sbjct: 100 KRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGE---------------------L 138

Query: 557 ALHRAAKRGDFDLVHTLVSRCY---DVNASDADGYTPL----------------MLAAKS 597
            L  AA    +D+V  L+   +    + A+D+ G T L                ++    
Sbjct: 139 PLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYD 198

Query: 598 GHGSVCQLLISSGAKCDIENARNETALALARENGN 632
           G   +   L  +    +I N +  T L LA + G 
Sbjct: 199 GLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGK 233

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 78.7 bits (194), Expect = 2e-16
 Identities = 37/238 (15%), Positives = 72/238 (30%), Gaps = 54/238 (22%)

Query: 312 NGRTLIHHAILC---NNARAVELLLNCAVDKEFPVQTYS-------KTELRPIHLAARLG 361
            G+T +  A+L         +  LL    D   P    +             +H+A    
Sbjct: 42  TGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKR 101

Query: 362 SAKILRRLISAGCNINSRTAA-------------GETAAMICARYKHEECLKFLASEGAD 408
           S + ++ L+  G +++ R                GE    + A  K  + + +L      
Sbjct: 102 SLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH- 160

Query: 409 LGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGN------IIQSSNASRFSPLMFVTQ 462
                   Q A+  A  S                GN      ++ + N+   S L+    
Sbjct: 161 --------QPASLEATDSL---------------GNTVLHALVMIADNSPENSALVIHMY 197

Query: 463 ANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYG 520
              +    +L        +  +  G +   +AA  G +E FR +L    +    + + 
Sbjct: 198 DGLLQMGARLCP-TVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAAHHHH 254

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 57.9 bits (140), Expect = 2e-09
 Identities = 41/305 (13%), Positives = 80/305 (26%), Gaps = 76/305 (24%)

Query: 91  TALFLAAHAGNLTLVRKLL--------SLGANVNQKLFRGYATTA------AVREDHLEI 136
             LF     G    +  LL         L  +   +   G   T        +++     
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGK--TCLMKAVLNLQDGVNAC 61

Query: 137 LDLLIKAGACQEACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVV 196
           +  L++        +                L+ A           AL  A  +  +  V
Sbjct: 62  IMPLLQIDKDSGNPKP---------------LVNAQCTDEFYQGHSALHIAIEKRSLQCV 106

Query: 197 DTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVK---MD 253
             L++ G D +                 F    L  A  ++Q  VV  LL+   +   ++
Sbjct: 107 KLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLE 166

Query: 254 IKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNG 313
               +G      +T                             +LH L      +     
Sbjct: 167 ATDSLG------NT-----------------------------VLHALVMIADNS---PE 188

Query: 314 RTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAG 373
            + +   +     +    L      +E      +   L P+ LAA+ G  +I R ++   
Sbjct: 189 NSALVIHMYDGLLQMGARLCPTVQLEEIS----NHQGLTPLKLAAKEGKIEIFRHILQRE 244

Query: 374 CNINS 378
            +  +
Sbjct: 245 FSGAA 249

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 57.1 bits (138), Expect = 5e-09
 Identities = 25/163 (15%), Positives = 45/163 (27%), Gaps = 47/163 (28%)

Query: 494 AAAAGHVEAFRLLL--------HAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYAL 545
             + G  E    LL        +   +   +   G+T +  A LN    V   ++     
Sbjct: 9   VVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM----- 63

Query: 546 EEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQL 605
                       L      G+   +                G++ L +A +       +L
Sbjct: 64  ----------PLLQIDKDSGNPKPLVN-----AQCTDEFYQGHSALHIAIEKRSLQCVKL 108

Query: 606 LISSGAKCDIENARN----------------ETALALARENGN 632
           L+ +GA  D+ + R                 E  L+LA     
Sbjct: 109 LVENGA--DV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 148

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 51.7 bits (124), Expect = 2e-07
 Identities = 30/242 (12%), Positives = 58/242 (23%), Gaps = 58/242 (23%)

Query: 182 HALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISV 241
              V     G    +  L++   D+       L +++         +AL  A+  R +  
Sbjct: 48  MKAVLNLQDGVNACIMPLLQIDKDSGNPK--PLVNAQCTDEFYQGHSALHIAIEKRSLQC 105

Query: 242 VRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHML 301
           V+LL++ G  + ++                                              
Sbjct: 106 VKLLVENGADVHLRACGR-----------------------------------------F 124

Query: 302 FQHISPNILHNGRTLIHHAILCNNARAVELLLNC--------AVDKE-------FPVQTY 346
           FQ       + G   +  A        V  LL          A D           +   
Sbjct: 125 FQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIAD 184

Query: 347 SKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEG 406
           +  E   + +    G  ++  RL             G T   + A+    E  + +    
Sbjct: 185 NSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQRE 244

Query: 407 AD 408
             
Sbjct: 245 FS 246

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 50.2 bits (120), Expect = 9e-07
 Identities = 21/135 (15%), Positives = 42/135 (31%), Gaps = 28/135 (20%)

Query: 311 HNGRTLIHHAILCNNARAVELLLNC-----AVDKEFPVQTYSKTELR----PIHLAARLG 361
           + G + +H AI   + + V+LL+               Q +  T       P+ LAA   
Sbjct: 88  YQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTK 147

Query: 362 SAKILRRLISAG---CNINSRTAAGETA---------------AMICARYK-HEECLKFL 402
              ++  L+       ++ +  + G T                A++   Y    +    L
Sbjct: 148 QWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARL 207

Query: 403 ASEGADLGLINYAGQ 417
                   + N+ G 
Sbjct: 208 CPTVQLEEISNHQGL 222

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 18/103 (17%), Positives = 31/103 (30%), Gaps = 22/103 (21%)

Query: 557 ALHRAAKRGDFDLVHTLV--------SRCYDVNASDADGYTPLMLAA---KSGHGSVCQL 605
            L     RG  + +  L+                  + G T LM A    + G  +    
Sbjct: 5   RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMP 64

Query: 606 LISSG-----------AKCDIENARNETALALARENGNGNEAE 637
           L+              A+C  E  +  +AL +A E  +    +
Sbjct: 65  LLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVK 107

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 47.9 bits (114), Expect = 5e-06
 Identities = 32/186 (17%), Positives = 56/186 (30%), Gaps = 34/186 (18%)

Query: 82  VYEEFKTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA-------------- 127
             +EF    +AL +A    +L  V+ L+  GA+V+ +    +                  
Sbjct: 83  CTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSL 142

Query: 128 AVREDHLEILDLLIKAGACQEACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSA 187
           A      +++  L++    Q A  EA   T  LG      L     +        ALV  
Sbjct: 143 AACTKQWDVVTYLLENPH-QPASLEA---TDSLGN---TVLHALVMIADNSPENSALVIH 195

Query: 188 CFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQ 247
            + G + +   L          +             +     L  A    +I + R +LQ
Sbjct: 196 MYDGLLQMGARLCPTVQLEEISN-------------HQGLTPLKLAAKEGKIEIFRHILQ 242

Query: 248 AGVKMD 253
                 
Sbjct: 243 REFSGA 248

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 1/71 (1%)

Query: 81  VVYEEFKTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGY-ATTAAVREDHLEILDL 139
           V+  +   E +AL +  + G L +  +L            +G      A +E  +EI   
Sbjct: 180 VMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRH 239

Query: 140 LIKAGACQEAC 150
           +++      A 
Sbjct: 240 ILQREFSGAAA 250

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  106 bits (265), Expect = 8e-25
 Identities = 52/371 (14%), Positives = 88/371 (23%), Gaps = 77/371 (20%)

Query: 301 LFQHISPNILHNGRTLIHHAIL------CNNARAVELLLNCAVDKEFPVQTYSKTELR-- 352
           LFQH       +  TL +   +        N   V  LL               ++    
Sbjct: 29  LFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKK 88

Query: 353 ------PIHLAARLGSA---KILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLA 403
                    +AA  G +     L  L+++   +    A    A  + A   H   L  L 
Sbjct: 89  GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLC 148

Query: 404 SEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQA 463
                  +                                       A  +       + 
Sbjct: 149 ELAPTEIMAM-----------------------------------IQAENYHAFRLAAEN 173

Query: 464 NDVDALKKLIE-WADVDLDEQDADGFSAAMIAAAA-GHVEAFRLLLHAGANIKLQNKYGE 521
             +  L +L E           A+ + A   AA   GH      LL     +     +  
Sbjct: 174 GHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEF 233

Query: 522 TAITLA-----ELNRNGEVLEQVILEYALEEG-------QKGSAGFYALHRAAKRGDFDL 569
                        + N         + +  +G        +   GFY L    +R D  L
Sbjct: 234 EYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVL 293

Query: 570 VHTL--------VSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNE 621
           +  +        +           D    L LA + G+   C LL+S  +   +      
Sbjct: 294 LDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPS---VLALTKA 350

Query: 622 TALALARENGN 632
               +    G 
Sbjct: 351 NNYYINETGGR 361

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 67.7 bits (165), Expect = 4e-12
 Identities = 36/280 (12%), Positives = 63/280 (22%), Gaps = 54/280 (19%)

Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
                   A    +   +  L   A  +   +            LAA  G   +L RL  
Sbjct: 127 ENYQAFRLAAENGHLHVLNRLCELAPTEI--MAMIQAENYHAFRLAAENGHLHVLNRLCE 184

Query: 372 AGCNINSRT--AAGETAAMICARYK-HEECLKFLASEGADLGLINYAGQCANSIAKSSRW 428
                 +    A    A    A  + H   + FL         + YA             
Sbjct: 185 LAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM---LAYAEIHEFEYG----- 236

Query: 429 TLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWA------DVDLDE 482
               ++ V   I                       N +  +    + +      D+    
Sbjct: 237 ----EKYVNPFI-------------------ARHVNRLKEMHDAFKLSNPDGVFDLVTKS 273

Query: 483 QDADGFSAAMIAAAAGH---VEAFRLLLH-----AGANIKLQNKYGETAITLAELNRNGE 534
           +   GF              ++  R LL      A A            + LA    N  
Sbjct: 274 ECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQG 333

Query: 535 VLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLV 574
               ++   ++    K +      +     G  DL    +
Sbjct: 334 ACALLLSIPSVLALTKANN----YYINETGGRLDLRAVAL 369

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 63.4 bits (154), Expect = 9e-11
 Identities = 39/296 (13%), Positives = 79/296 (26%), Gaps = 47/296 (15%)

Query: 87  KTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGY-ATTAAVREDHLEILDLLIKAGA 145
           +       +   +  L  +  LL+    V       Y A   A    HL +L+ L +   
Sbjct: 93  EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAP 152

Query: 146 CQEACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVD 205
            +                           +    + HA   A   G ++V++ L +    
Sbjct: 153 TEIMA------------------------MIQAENYHAFRLAAENGHLHVLNRLCELAPT 188

Query: 206 ANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWDM 265
                          + A         AV     +V+  LL   V +           + 
Sbjct: 189 EATAM----------IQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEK 238

Query: 266 DTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCNN 325
                +   A           A +      +    +F  ++ +    G  ++ + I  N+
Sbjct: 239 YVNPFI---ARHVNRLKEMHDAFKL-----SNPDGVFDLVTKSECLQGFYMLRNLIRRND 290

Query: 326 ARAVELLLN----CAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNIN 377
              ++ +        +    P  T        + LA RLG+      L+S    + 
Sbjct: 291 EVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLA 346

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 50.3 bits (120), Expect = 1e-06
 Identities = 28/197 (14%), Positives = 48/197 (24%), Gaps = 45/197 (22%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATT----AAVREDHLEILDLLIKAGAC 146
            A  LAA  G+L ++ +L  L       + +         AAV   H  +++ L+     
Sbjct: 165 HAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM 224

Query: 147 QE-----ACEEALLETSYLGQARPAELLMA------------TDLIRPQVSVH---ALVS 186
                    E      +         L                DL+     +     L +
Sbjct: 225 LAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRN 284

Query: 187 ACFRGFVNVVDTL--------IKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQ 238
              R    ++D +        IK       I                    L  A+    
Sbjct: 285 LIRRNDEVLLDDIRFLLSIPGIKALAPTATIP-------------GDANELLRLALRLGN 331

Query: 239 ISVVRLLLQAGVKMDIK 255
                LLL     + + 
Sbjct: 332 QGACALLLSIPSVLALT 348

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 48.4 bits (115), Expect = 5e-06
 Identities = 38/283 (13%), Positives = 78/283 (27%), Gaps = 46/283 (16%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKAGACQ 147
            A  LAA  G+L ++ +L  L       + +     A   A    HL +L+ L +    +
Sbjct: 130 QAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTE 189

Query: 148 EACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDAN 207
                                                 +A  RG  NV++ L+ C V   
Sbjct: 190 ATAMIQAENYYAF-----------------------RWAAVGRGHHNVINFLLDCPVMLA 226

Query: 208 AIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWDMDT 267
             +           H        V   ++R ++ ++ +  A    +        +     
Sbjct: 227 YAEI----------HEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECL 276

Query: 268 GEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCNNAR 327
                +   +  +  +    + +  S   I  +      P    +   L+  A+   N  
Sbjct: 277 QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPG---DANELLRLALRLGNQG 333

Query: 328 AVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLI 370
           A  LLL+              T+    ++    G   +    +
Sbjct: 334 ACALLLSIPSVLA-------LTKANNYYINETGGRLDLRAVAL 369

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 99.8 bits (250), Expect = 1e-24
 Identities = 43/151 (28%), Positives = 64/151 (42%), Gaps = 10/151 (6%)

Query: 486 DGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYAL 545
           D     + AA AG  +  R+L+  GA     +  G + + LA    +    E  +L   L
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTE--VL---L 54

Query: 546 EEG----QKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGS 601
             G     +       LH AA  G  ++V  L+    DVNA D    T L  A +  H  
Sbjct: 55  RAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQE 114

Query: 602 VCQLLISSGAKCDIENARNETALALARENGN 632
           V +LLI  GA    ++   +TA  ++ +NGN
Sbjct: 115 VVELLIKYGADVHTQSKFCKTAFDISIDNGN 145

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 90.9 bits (227), Expect = 1e-21
 Identities = 35/156 (22%), Positives = 61/156 (39%), Gaps = 13/156 (8%)

Query: 456 PLMFVTQANDVDALKKLIEW-ADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIK 514
            L+   +A   D ++ L+   A       D  G S   +AA  GH     +LL AG +  
Sbjct: 5   KLLEAARAGQDDEVRILMANGAPFT---TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD 61

Query: 515 LQNKYGETAITLAELNRNGEVLEQVILEYALEEG----QKGSAGFYALHRAAKRGDFDLV 570
            + K   T + +A    +       I+E  L+ G     K      ALH A +    ++V
Sbjct: 62  ARTKVDRTPLHMAASEGHAN-----IVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVV 116

Query: 571 HTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLL 606
             L+    DV+       T   ++  +G+  + ++L
Sbjct: 117 ELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 70.1 bits (173), Expect = 2e-14
 Identities = 38/200 (19%), Positives = 68/200 (34%), Gaps = 53/200 (26%)

Query: 312 NGRTLIHHAILCNNARAVELLL----NCAVDKEFPVQTYSKTELRPIHLAARLGSAKILR 367
           +    +  A        V +L+        D          +   P+HLAA+ G      
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTTDW------LGTS---PLHLAAQYGHFSTTE 51

Query: 368 RLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSR 427
            L+ AG + ++RT    T   + A   H   ++ L   GAD   +N         AK   
Sbjct: 52  VLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD---VN---------AK--- 96

Query: 428 WTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEW-ADVDLDEQDAD 486
                                 +  + + L + T+ N  + ++ LI++ ADV    Q   
Sbjct: 97  ----------------------DMLKMTALHWATEHNHQEVVELLIKYGADV--HTQSKF 132

Query: 487 GFSAAMIAAAAGHVEAFRLL 506
             +A  I+   G+ +   +L
Sbjct: 133 CKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 54.3 bits (132), Expect = 7e-09
 Identities = 39/168 (23%), Positives = 58/168 (34%), Gaps = 45/168 (26%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKAGACQ 147
             L  AA AG    VR L++ GA           T+    A +  H    ++L++AG  +
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTTD---WLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60

Query: 148 EACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDAN 207
           +A  +         +         T           L  A   G  N+V+ L+K G D N
Sbjct: 61  DARTKV-------DR---------T----------PLHMAASEGHANIVEVLLKHGADVN 94

Query: 208 AIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIK 255
           A D         ALH          A       VV LL++ G  +  +
Sbjct: 95  AKD----MLKMTALHW---------ATEHNHQEVVELLIKYGADVHTQ 129

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 50.5 bits (122), Expect = 1e-07
 Identities = 29/123 (23%), Positives = 41/123 (33%), Gaps = 31/123 (25%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKAGACQ 147
           + L LAA  G+ +    LL  G + + +       T    A  E H  I+++L+K GA  
Sbjct: 36  SPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDR--TPLHMAASEGHANIVEVLLKHGADV 93

Query: 148 EACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDAN 207
                       L           T          AL  A       VV+ LIK G D +
Sbjct: 94  N-------AKDMLKM---------T----------ALHWATEHNHQEVVELLIKYGADVH 127

Query: 208 AID 210
              
Sbjct: 128 TQS 130

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 49.3 bits (119), Expect = 4e-07
 Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 5/62 (8%)

Query: 87  KTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKA 143
           K + T L +AA  G+  +V  LL  GA+VN K       TA   A   +H E+++LLIK 
Sbjct: 65  KVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKM--TALHWATEHNHQEVVELLIKY 122

Query: 144 GA 145
           GA
Sbjct: 123 GA 124

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 40.8 bits (97), Expect = 3e-04
 Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 5/53 (9%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLL 140
           TAL  A    +  +V  L+  GA+V+ +       TA   ++   + ++ ++L
Sbjct: 102 TALHWATEHNHQEVVELLIKYGADVHTQSKFCK--TAFDISIDNGNEDLAEIL 152

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 96.7 bits (242), Expect = 5e-24
 Identities = 29/148 (19%), Positives = 48/148 (32%), Gaps = 34/148 (22%)

Query: 484 DADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEY 543
            +      M A   G ++  +  +  G ++    + G                       
Sbjct: 4   GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKP-------------------- 43

Query: 544 ALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVC 603
                         LH AA  G  +++  L+ +  D+NA D    TPL+ A   GH S  
Sbjct: 44  --------------LHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCV 89

Query: 604 QLLISSGAKCDIENARNETALALARENG 631
           +LL+S GA   ++     TA        
Sbjct: 90  KLLLSKGADKTVKGPDGLTAFEATDNQA 117

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 82.8 bits (206), Expect = 4e-19
 Identities = 28/149 (18%), Positives = 43/149 (28%), Gaps = 35/149 (23%)

Query: 456 PLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKL 515
             M+  +  D+D +K  +     D++     G      AA  G +E    LL  GA+I  
Sbjct: 10  EFMWALKNGDLDEVKDYVA-KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 68

Query: 516 QNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVS 575
            +K+  T                                   L  A   G    V  L+S
Sbjct: 69  PDKHHIT----------------------------------PLLSAVYEGHVSCVKLLLS 94

Query: 576 RCYDVNASDADGYTPLMLAAKSGHGSVCQ 604
           +  D      DG T           ++ Q
Sbjct: 95  KGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 77.8 bits (193), Expect = 2e-17
 Identities = 26/85 (30%), Positives = 36/85 (42%)

Query: 548 GQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLI 607
           G  GS        A K GD D V   V++  DVN +   G  PL  AA  G   + + L+
Sbjct: 1   GPLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLL 60

Query: 608 SSGAKCDIENARNETALALARENGN 632
             GA  +  +  + T L  A   G+
Sbjct: 61  LKGADINAPDKHHITPLLSAVYEGH 85

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 63.2 bits (155), Expect = 3e-12
 Identities = 24/155 (15%), Positives = 47/155 (30%), Gaps = 38/155 (24%)

Query: 383 GETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRS 442
            +   M   +    + +K   ++G D+      G                          
Sbjct: 7   CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGG-----------RK------------- 42

Query: 443 GNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEA 502
                        PL +      ++ L+ L+     D++  D    +  + A   GHV  
Sbjct: 43  -------------PLHYAADCGQLEILEFLLL-KGADINAPDKHHITPLLSAVYEGHVSC 88

Query: 503 FRLLLHAGANIKLQNKYGETAITLAELNRNGEVLE 537
            +LLL  GA+  ++   G TA    +      +L+
Sbjct: 89  VKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 60.1 bits (147), Expect = 4e-11
 Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 4/106 (3%)

Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
                   A+   +   V+  +    D         +   +P+H AA  G  +IL  L+ 
Sbjct: 6   MCDKEFMWALKNGDLDEVKDYVAKGEDVN----RTLEGGRKPLHYAADCGQLEILEFLLL 61

Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQ 417
            G +IN+      T  +      H  C+K L S+GAD  +    G 
Sbjct: 62  KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGL 107

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 55.5 bits (135), Expect = 2e-09
 Identities = 28/123 (22%), Positives = 40/123 (32%), Gaps = 31/123 (25%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKAGACQ 147
                A   G+L  V+  ++ G +VN+ L  G        A     LEIL+ L+  GA  
Sbjct: 9   KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGR--KPLHYAADCGQLEILEFLLLKGADI 66

Query: 148 EACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDAN 207
            A                      T           L+SA + G V+ V  L+  G D  
Sbjct: 67  NA-------PDKHHI---------T----------PLLSAVYEGHVSCVKLLLSKGADKT 100

Query: 208 AID 210
              
Sbjct: 101 VKG 103

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 47.4 bits (114), Expect = 9e-07
 Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 4/89 (4%)

Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
            GR  +H+A  C     +E LL    D   P     K  + P+  A   G    ++ L+S
Sbjct: 39  GGRKPLHYAADCGQLEILEFLLLKGADINAP----DKHHITPLLSAVYEGHVSCVKLLLS 94

Query: 372 AGCNINSRTAAGETAAMICARYKHEECLK 400
            G +   +   G TA         +  L+
Sbjct: 95  KGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 40.8 bits (97), Expect = 2e-04
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 5/50 (10%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEIL 137
           T L  A + G+++ V+ LLS GA+   K   G   TA      +    +L
Sbjct: 75  TPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGL--TAFEATDNQAIKALL 122

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 96.3 bits (241), Expect = 9e-24
 Identities = 31/157 (19%), Positives = 52/157 (33%), Gaps = 37/157 (23%)

Query: 476 ADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEV 535
            D   +     G +   IA+  G + +   LL  G++  +++  G T             
Sbjct: 2   IDPFTNH---RGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTP------------ 46

Query: 536 LEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAA 595
                                 LH A   G   +V  L+     VN +     +PL  AA
Sbjct: 47  ----------------------LHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAA 84

Query: 596 KSGHGSVCQLLISSGAKCDIENARNETALALARENGN 632
           K+GH  + +LL+S GA  +  N      +    +   
Sbjct: 85  KNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESM 121

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 66.3 bits (163), Expect = 3e-13
 Identities = 22/161 (13%), Positives = 43/161 (26%), Gaps = 40/161 (24%)

Query: 353 PIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLI 412
            +H+A+  G    +  L+  G + N +  AG T       + H + ++ L    A +   
Sbjct: 13  LLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTT 72

Query: 413 NYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKL 472
            Y              +                          PL    +   VD +K L
Sbjct: 73  GYQN-----------DS--------------------------PLHDAAKNGHVDIVKLL 95

Query: 473 IEW-ADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGAN 512
           + + A    +  +  G                 L     ++
Sbjct: 96  LSYGASR--NAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 59.4 bits (145), Expect = 9e-11
 Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 14/116 (12%)

Query: 307 PNILHNGRTLIHHAILCNNARAVELLLN-----CAVDKEFPVQTYSKTELRPIHLAARLG 361
           P   H G TL+H A +  +  +VE LL         D          T   P+H A   G
Sbjct: 4   PFTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDH------AGWT---PLHEACNHG 54

Query: 362 SAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQ 417
             K++  L+     +N+     ++     A+  H + +K L S GA    +N  G 
Sbjct: 55  HLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGL 110

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 55.5 bits (135), Expect = 2e-09
 Identities = 32/162 (19%), Positives = 55/162 (33%), Gaps = 44/162 (27%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKAGACQ 147
           T L +A+  G++  V  LL  G++ N K   G+  T    A    HL++++LL++  A  
Sbjct: 12  TLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGW--TPLHEACNHGHLKVVELLLQHKALV 69

Query: 148 EACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDAN 207
                    T Y            +           L  A   G V++V  L+  G   N
Sbjct: 70  NT-------TGYQND---------S----------PLHDAAKNGHVDIVKLLLSYGASRN 103

Query: 208 AIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAG 249
           A++              F    +         S++ L  +  
Sbjct: 104 AVN-------------IFGLRPVDYTDDESMKSLLLLPEKNE 132

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 55.1 bits (134), Expect = 3e-09
 Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 14/103 (13%)

Query: 311 HNGRTLIHHAILCNNARAVELLLN-----CAVDKEFPVQTYSKTELRPIHLAARLGSAKI 365
           H G T +H A    + + VELLL                  + +   P+H AA+ G   I
Sbjct: 41  HAGWTPLHEACNHGHLKVVELLLQHKALVNTTGY------QNDS---PLHDAAKNGHVDI 91

Query: 366 LRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGAD 408
           ++ L+S G + N+    G            +  L       + 
Sbjct: 92  VKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 49.7 bits (120), Expect = 2e-07
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKAGA 145
           + L  AA  G++ +V+ LLS GA+ N     G           E    +L L  K  +
Sbjct: 78  SPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGL--RPVDYTDDESMKSLLLLPEKNES 133

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  101 bits (252), Expect = 2e-23
 Identities = 43/289 (14%), Positives = 98/289 (33%), Gaps = 24/289 (8%)

Query: 362 SAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANS 421
             KI++ L S   N N +    E         + +E    L ++ ++    N  G  +N 
Sbjct: 42  PLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSN---RNSEGGSSNQ 98

Query: 422 IAKSSRWTLGFQQAVVDSIRSG-NIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDL 480
             +   +    Q+       +  N+    +    +PL ++T   +++ +K L++    + 
Sbjct: 99  QQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVK-HGSNR 157

Query: 481 DEQDADGFSAAMIAAAAGHVEAFR----LLLHAGANIKLQNKYGETAITLAELNRNGEVL 536
              D  G S  + A  + +         LL +    + L++    T +    +       
Sbjct: 158 LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGC 217

Query: 537 EQV-------ILEYALEEGQK--------GSAGFYALHRAAKRGDFDLVHTLVSRCYDVN 581
                     ++ + +++  +          +     +   K    + +         +N
Sbjct: 218 SAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLN 277

Query: 582 ASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALAREN 630
           A D++G T L +AA+ G+ S+   L+  GA   I N      +      
Sbjct: 278 AQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGL 326

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  100 bits (251), Expect = 2e-23
 Identities = 33/236 (13%), Positives = 75/236 (31%), Gaps = 23/236 (9%)

Query: 310 LHNGRTLIHHAILCNNARAV-ELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRR 368
             +      H    +  + V +   N  ++   PV  +  T   P+H    + + ++++ 
Sbjct: 93  GGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNT---PLHWLTSIANLELVKH 149

Query: 369 LISAGCNINSRTAAGETAAMICARYKH---EECLKFLASEGADLGLIN-----------Y 414
           L+  G N       GE+  +   +  +       + L         +            +
Sbjct: 150 LVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP--CLILEDSMNRTILHH 207

Query: 415 AGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIE 474
               +     S+         +   ++  N    S  +              D++ + ++
Sbjct: 208 IIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD 267

Query: 475 ---WADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLA 527
                   L+ QD++G +   IAA  G++     LL  GA+  + NK G   +   
Sbjct: 268 LKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 323

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 68.5 bits (167), Expect = 1e-12
 Identities = 21/227 (9%), Positives = 61/227 (26%), Gaps = 47/227 (20%)

Query: 440 IRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQ-DADGFSAAMIAAAAG 498
               +   S   S       V+  + +  +        ++L+   D  G +      +  
Sbjct: 83  NNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIA 142

Query: 499 HVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQV--ILEYALEEGQKGSAGFY 556
           ++E  + L+  G+N    +  GE+ +  A  + N         +L+Y             
Sbjct: 143 NLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP---------- 192

Query: 557 ALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPL----MLAAKSGHGSVCQ-------- 604
                                  +   D+   T L    + +  +G  +  +        
Sbjct: 193 ----------------------CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMG 230

Query: 605 LLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLD 651
            ++    +        + +    +     +     +  +  +  +L+
Sbjct: 231 WIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLN 277

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 67.0 bits (163), Expect = 4e-12
 Identities = 22/136 (16%), Positives = 47/136 (34%), Gaps = 3/136 (2%)

Query: 516 QNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVS 575
           Q    E  +         E+   +  + +    + GS+     H +      ++     +
Sbjct: 59  QKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPN 118

Query: 576 RCYDVNA-SDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGN 634
              ++N   D  G TPL       +  + + L+  G+     +   E+ L  A ++ N  
Sbjct: 119 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNY 178

Query: 635 EAENV--ILDELALTL 648
           ++     +LD L   L
Sbjct: 179 DSGTFEALLDYLYPCL 194

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 47.7 bits (113), Expect = 7e-06
 Identities = 28/195 (14%), Positives = 47/195 (24%), Gaps = 45/195 (23%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDH-------LEILDLL 140
           T L       NL LV+ L+  G+N       G   +    AV+  +         +LD L
Sbjct: 133 TPLHWLTSIANLELVKHLVKHGSNRLYGDNMGE--SCLVKAVKSVNNYDSGTFEALLDYL 190

Query: 141 I-------KAG------ACQEACEEALLETSYLGQARPAELLM-------ATDLIRPQVS 180
                                +        +          ++        +     +  
Sbjct: 191 YPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK 250

Query: 181 VHALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQIS 240
            +          +  +D         NA D     +    L+          A     IS
Sbjct: 251 PNDKNGERKDSILENLDLKWIIANMLNAQD----SNGDTCLNI---------AARLGNIS 297

Query: 241 VVRLLLQAGVKMDIK 255
           +V  LL  G    I 
Sbjct: 298 IVDALLDYGADPFIA 312

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 47.7 bits (113), Expect = 7e-06
 Identities = 31/211 (14%), Positives = 62/211 (29%), Gaps = 30/211 (14%)

Query: 187 ACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSR----QISVV 242
                 + +V  L+K G +    D             N   + LV AV S       +  
Sbjct: 138 LTSIANLELVKHLVKHGSNRLYGD-------------NMGESCLVKAVKSVNNYDSGTFE 184

Query: 243 RLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLF 302
            LL      + ++  M        T   L      +     +  A  Y +    ++  + 
Sbjct: 185 ALLDYLYPCLILEDSMNR------TI--LHHIIITSGMTGCSAAAKYYLD---ILMGWIV 233

Query: 303 QHISPNI--LHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARL 360
           +  +  I    N +    +        ++   L+        +          +++AARL
Sbjct: 234 KKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARL 293

Query: 361 GSAKILRRLISAGCNINSRTAAGETAAMICA 391
           G+  I+  L+  G +      +G       A
Sbjct: 294 GNISIVDALLDYGADPFIANKSGLRPVDFGA 324

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 93.6 bits (234), Expect = 1e-22
 Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 41/160 (25%)

Query: 476 ADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEV 535
           +        +D     + AA AG  +  R+L+  GA++  +++YG T             
Sbjct: 4   SHH-HHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTP------------ 50

Query: 536 LEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAA 595
                                 L+ A   G  ++V  L+    DVNA DA G+TPL LAA
Sbjct: 51  ----------------------LYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAA 88

Query: 596 KSGHGSVCQLLISSGAKCDIENARNE---TALALARENGN 632
             GH  + ++L+  GA  D+ NA+++   TA  ++  NGN
Sbjct: 89  FIGHLEIAEVLLKHGA--DV-NAQDKFGKTAFDISIGNGN 125

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 60.9 bits (149), Expect = 2e-11
 Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 19/113 (16%)

Query: 308 NILH--NGRTLIHHAILCNNARAVELLLNC-----AVDKEFPVQTYSKTELRPIHLAARL 360
           +  H  +    +  A        V +L+       A D+      Y  T   P++LA   
Sbjct: 7   HHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDE------YGLT---PLYLATAH 57

Query: 361 GSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLIN 413
           G  +I+  L+  G ++N+  A G T   + A   H E  + L   GAD   +N
Sbjct: 58  GHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGAD---VN 107

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 60.5 bits (148), Expect = 3e-11
 Identities = 30/156 (19%), Positives = 57/156 (36%), Gaps = 40/156 (25%)

Query: 353 PIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLI 412
            +  AAR G    +R L++ G ++N++   G T   +   + H E ++ L   GAD   +
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD---V 73

Query: 413 NYAGQCANSIAK-SSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKK 471
           N         A  +  +T                          PL        ++  + 
Sbjct: 74  N---------AVDAIGFT--------------------------PLHLAAFIGHLEIAEV 98

Query: 472 LIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLL 507
           L++    D++ QD  G +A  I+   G+ +   +L 
Sbjct: 99  LLK-HGADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 53.9 bits (131), Expect = 7e-09
 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 14/98 (14%)

Query: 312 NGRTLIHHAILCNNARAVELLLNC-----AVDKEFPVQTYSKTELRPIHLAARLGSAKIL 366
            G T ++ A    +   VE+LL       AVD          T   P+HLAA +G  +I 
Sbjct: 46  YGLTPLYLATAHGHLEIVEVLLKNGADVNAVDA------IGFT---PLHLAAFIGHLEIA 96

Query: 367 RRLISAGCNINSRTAAGETAAMICARYKHEECLKFLAS 404
             L+  G ++N++   G+TA  I     +E+  + L  
Sbjct: 97  EVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 50.1 bits (121), Expect = 1e-07
 Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 5/58 (8%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKAGA 145
             L  AA AG    VR L++ GA+VN K   G   T    A    HLEI+++L+K GA
Sbjct: 16  KKLLEAARAGQDDEVRILMANGADVNAKDEYGL--TPLYLATAHGHLEIVEVLLKNGA 71

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 48.2 bits (116), Expect = 7e-07
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 5/58 (8%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKAGA 145
           T L+LA   G+L +V  LL  GA+VN     G+  T    A    HLEI ++L+K GA
Sbjct: 49  TPLYLATAHGHLEIVEVLLKNGADVNAVDAIGF--TPLHLAAFIGHLEIAEVLLKHGA 104

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 44.3 bits (106), Expect = 2e-05
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 5/55 (9%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIK 142
           T L LAA  G+L +   LL  GA+VN +   G   TA   ++   + ++ ++L K
Sbjct: 82  TPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGK--TAFDISIGNGNEDLAEILQK 134

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 96.2 bits (240), Expect = 1e-22
 Identities = 29/198 (14%), Positives = 65/198 (32%), Gaps = 7/198 (3%)

Query: 440 IRSGNIIQSSNASRFSP---LMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAA 496
           +R     + +  +R +P   L+      +++ +++ ++    D  + + +G +A   A  
Sbjct: 5   LRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVK-EMNDPSQPNEEGITALHNAIC 63

Query: 497 AGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFY 556
             +      L+ AGAN+   + +G T +  A    +  +   ++   A       S G  
Sbjct: 64  GANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGAT 123

Query: 557 ALHRAA--KRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCD 614
           A  +    + G  D    L      +   ++     L   +    G              
Sbjct: 124 AFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSA-EFGDELSFREGESVTVL 182

Query: 615 IENARNETALALARENGN 632
             +   ET    A  +G 
Sbjct: 183 RRDGPEETDWWWAALHGQ 200

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 95.0 bits (237), Expect = 3e-22
 Identities = 29/169 (17%), Positives = 51/169 (30%), Gaps = 37/169 (21%)

Query: 470 KKLIEW-ADVDL-DEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLA 527
           + ++              +     + AA  G +E  +  +    +    N+ G TA    
Sbjct: 2   RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITA---- 57

Query: 528 ELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADG 587
                                         LH A    ++ +V  L++   +VN+ D+ G
Sbjct: 58  ------------------------------LHNAICGANYSIVDFLITAGANVNSPDSHG 87

Query: 588 YTPLMLAAKSGHGSVCQLLISSGAKCDIENARN-ETALALARENGNGNE 635
           +TPL  AA      +C  L+  GA        +  TA         G  
Sbjct: 88  WTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYA 136

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 85.4 bits (212), Expect = 7e-19
 Identities = 35/246 (14%), Positives = 67/246 (27%), Gaps = 46/246 (18%)

Query: 329 VELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAM 388
           +  +L  A       +      L  +  AA  G  +++++ +    + +     G TA  
Sbjct: 1   MRSVLRKAGSPR-KARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALH 59

Query: 389 ICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSR-WTLGFQQAVVDSIRSGNIIQ 447
                 +   + FL + GA+   +N         +  S  WT                  
Sbjct: 60  NAICGANYSIVDFLITAGAN---VN---------SPDSHGWT------------------ 89

Query: 448 SSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDA-DGFSAAMIAAAA--GHVEAFR 504
                   PL      ND      L++     +      DG +A         G+ +   
Sbjct: 90  --------PLHCAASCNDTVICMALVQ-HGAAIFATTLSDGATAFEKCDPYREGYADCAT 140

Query: 505 LLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKR 564
            L     ++ L N     A+         E+        ++   ++          AA  
Sbjct: 141 YLADVEQSMGLMNSGAVYALWDYSAEFGDELS--FREGESVTVLRRDGPEETDWWWAALH 198

Query: 565 GDFDLV 570
           G    V
Sbjct: 199 GQEGYV 204

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 77.7 bits (192), Expect = 3e-16
 Identities = 34/250 (13%), Positives = 61/250 (24%), Gaps = 49/250 (19%)

Query: 288 VEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYS 347
           +                 +     N   L+  A L      V+  +    D   P    +
Sbjct: 1   MRSVLRKAGSPR-----KARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQP----N 51

Query: 348 KTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGA 407
           +  +  +H A    +  I+  LI+AG N+NS  + G T     A          L   GA
Sbjct: 52  EEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGA 111

Query: 408 DLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQAND-- 465
            +           +   S   T                                   +  
Sbjct: 112 AI----------FATTLSDGAT--------------------------AFEKCDPYREGY 135

Query: 466 VDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAIT 525
            D    L +  +  +   ++    A    +A    E           +  ++   ET   
Sbjct: 136 ADCATYLAD-VEQSMGLMNSGAVYALWDYSAEFGDE-LSFREGESVTVLRRDGPEETDWW 193

Query: 526 LAELNRNGEV 535
            A L+     
Sbjct: 194 WAALHGQEGY 203

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 28/182 (15%), Positives = 51/182 (28%), Gaps = 31/182 (17%)

Query: 88  TEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKAG 144
             +  L  AA  G L +V++ +    + +Q    G   TA   A+   +  I+D LI AG
Sbjct: 20  NPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGI--TALHNAICGANYSIVDFLITAG 77

Query: 145 ACQEACEE----ALLETSYLGQARPAELLM-------ATDLIRPQVSVHALVSACFRGFV 193
           A   + +      L   +          L+       AT L     +          G+ 
Sbjct: 78  ANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFE-KCDPYREGYA 136

Query: 194 NVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMD 253
           +    L         ++         AL              +     +       V + 
Sbjct: 137 DCATYLADVEQSMGLMNSGA----VYALWDY----------SAEFGDELSFREGESVTVL 182

Query: 254 IK 255
            +
Sbjct: 183 RR 184

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 48.0 bits (115), Expect = 4e-06
 Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 3/66 (4%)

Query: 570 VHTLVSRCYDVNASDADGYTP---LMLAAKSGHGSVCQLLISSGAKCDIENARNETALAL 626
           + +++ +      +      P   L+ AA +G   V Q  +         N    TAL  
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60

Query: 627 ARENGN 632
           A    N
Sbjct: 61  AICGAN 66

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 46.9 bits (112), Expect = 7e-06
 Identities = 35/299 (11%), Positives = 58/299 (19%), Gaps = 103/299 (34%)

Query: 105 VRKLLSLGANVNQKLFRGY----ATTAAVREDHLEILDLLIKAGACQEACEEALLETSYL 160
           +R +L    +  +              A     LE++   +K         E        
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEE------- 53

Query: 161 GQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPA 220
           G          T          AL +A      ++VD LI  G + N+ D          
Sbjct: 54  GI---------T----------ALHNAICGANYSIVDFLITAGANVNSPDS----HGWTP 90

Query: 221 LHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAED 280
           LH          A       +   L+Q G  +            +  G            
Sbjct: 91  LHC---------AASCNDTVICMALVQHGAAIFAT--------TLSDGA----------- 122

Query: 281 YCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCNNARA--VELLLNCAVD 338
                                             T            A     L +    
Sbjct: 123 ----------------------------------TAFEKCDPYREGYADCATYLADVEQS 148

Query: 339 KEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEE 397
                 + +      +   +       L         +  R    ET     A +  E 
Sbjct: 149 MGLM-NSGAVY---ALWDYSA-EFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEG 202

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 97.2 bits (242), Expect = 2e-22
 Identities = 39/310 (12%), Positives = 76/310 (24%), Gaps = 78/310 (25%)

Query: 352 RPIHLAARLGSAK-------ILRRLISAGCNIN-SRTAAGETA---AMICARYKHEECLK 400
           R I  A    + +        L+R      +        G+T    AM+       + + 
Sbjct: 15  RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIA 74

Query: 401 FLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFV 460
            L         +                                    S     + L   
Sbjct: 75  LLLDVARKTDSLKQFV--------------------------NASYTDSYYKGQTALHIA 108

Query: 461 TQANDVDALKKLIE-WADVD------------LDEQDADGFSAAMIAAAAGHVEAFRLLL 507
            +  ++  +  L+E  ADV                    G     +AA    +   + LL
Sbjct: 109 IERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLL 168

Query: 508 HAG---ANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKR 564
                 A+I  ++  G T +       +  V          +  +  ++ +  +     +
Sbjct: 169 QNSWQPADISARDSVGNTVLHALVEVADNTV----------DNTKFVTSMYNEILILGAK 218

Query: 565 GDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETAL 624
                   L         ++  G TPL LAA SG   V   ++                 
Sbjct: 219 --------LHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH-------EPECR 263

Query: 625 ALARENGNGN 634
             A  + + +
Sbjct: 264 HAAAHHHHHH 273

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 80.6 bits (199), Expect = 6e-17
 Identities = 40/227 (17%), Positives = 75/227 (33%), Gaps = 50/227 (22%)

Query: 456 PLMFVTQANDVDALKKLIEWAD------VDLDEQDAD-GFSA---AMIAAAAGHVEAFRL 505
            +      ++   L+ L+ +         D + +D + G +    AM+    G  +   L
Sbjct: 16  SIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIAL 75

Query: 506 LLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRG 565
           LL                          + L+Q +     +   KG     ALH A +R 
Sbjct: 76  LLDVARKT--------------------DSLKQFVNASYTDSYYKGQT---ALHIAIERR 112

Query: 566 DFDLVHTLVSRCYDVNASDAD--------------GYTPLMLAAKSGHGSVCQLLISSGA 611
           +  LV  LV    DV A+                 G  PL LAA +   ++ + L+ +  
Sbjct: 113 NMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSW 172

Query: 612 KCDIENARNE---TALALARENGNGNEAENVILDELALTLVLDGTYV 655
           +    +AR+    T L    E  +        +  +   +++ G  +
Sbjct: 173 QPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKL 219

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 67.9 bits (166), Expect = 1e-12
 Identities = 38/313 (12%), Positives = 72/313 (23%), Gaps = 119/313 (38%)

Query: 312 NGRTLIHHAIL---CNNARAVELLLNCAVDKEFPVQTYSKTELR-------PIHLAARLG 361
            G+T +  A+L         + LLL+ A   +   Q  + +           +H+A    
Sbjct: 53  TGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERR 112

Query: 362 SAKILRRLISAGCNINSRT--------------AAGETAAMICARYKHEECLKFLASEGA 407
           +  ++  L+  G ++ +                  GE    + A       +KFL     
Sbjct: 113 NMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSW 172

Query: 408 DLGLINYAGQCANSIAKSSR-WTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDV 466
                    Q A+  A+ S   T                           L  + +  D 
Sbjct: 173 ---------QPADISARDSVGNT--------------------------VLHALVEVADN 197

Query: 467 DALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITL 526
                    +  +                    +     L       ++ N+ G T    
Sbjct: 198 TVDNTKFVTSMYNE------------------ILILGAKLHPTLKLEEITNRKGLT---- 235

Query: 527 AELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDAD 586
                                          L  AA  G   ++  ++ R       +  
Sbjct: 236 ------------------------------PLALAASSGKIGVLAYILQR-------EIH 258

Query: 587 GYTPLMLAAKSGH 599
                  AA   H
Sbjct: 259 EPECRHAAAHHHH 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 62.5 bits (152), Expect = 8e-11
 Identities = 30/163 (18%), Positives = 50/163 (30%), Gaps = 43/163 (26%)

Query: 509 AGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKG--------SAGFYALHR 560
             A  K    Y   +I  A    N + LE  +L +     ++           G   L +
Sbjct: 2   VSAGEKPPRLYDRRSIFDAVAQSNCQELE-SLLPFLQRSKKRLTDSEFKDPETGKTCLLK 60

Query: 561 A---AKRGDFDLVHTLVSRCYDVNA-----------SDADGYTPLMLAAKSGHGSVCQLL 606
           A      G  D +  L+      ++           S   G T L +A +  + ++  LL
Sbjct: 61  AMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLL 120

Query: 607 ISSGAKCDIENARN-----------------ETALALARENGN 632
           + +GA  D+  A                   E  L+LA     
Sbjct: 121 VENGA--DV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ 160

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 53.6 bits (129), Expect = 7e-08
 Identities = 49/294 (16%), Positives = 82/294 (27%), Gaps = 61/294 (20%)

Query: 91  TALFLAAHAGNLTLVRKLL-------SLGANVNQKLFRGYAT-----TAAVREDHLEILD 138
            ++F A    N   +  LL           +   K      T        +     + + 
Sbjct: 15  RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIA 74

Query: 139 LLIKAGACQEACEEAL----LETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVN 194
           LL+      ++ ++ +     ++ Y GQ                    AL  A  R  + 
Sbjct: 75  LLLDVARKTDSLKQFVNASYTDSYYKGQT-------------------ALHIAIERRNMT 115

Query: 195 VVDTLIKCGVDANAIDR-VLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKM- 252
           +V  L++ G D  A       + +K      F    L  A  + Q+++V+ LLQ   +  
Sbjct: 116 LVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPA 175

Query: 253 DIKVRMGAWSWDMDTGEEL----RVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPN 308
           DI  R      D      L     V     ++              GA LH         
Sbjct: 176 DISAR------DSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHP--TLKLEE 227

Query: 309 IL-HNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLG 361
           I    G T +  A        +  +L     +E              H AA   
Sbjct: 228 ITNRKGLTPLALAASSGKIGVLAYILQ----REIHEPE-------CRHAAAHHH 270

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 37/329 (11%), Positives = 74/329 (22%), Gaps = 101/329 (30%)

Query: 110 SLGANVNQK-------LF----RGYATTAAVREDHLEILDLLIKAGACQEACEEALLETS 158
           S+ A            +F    +         E  L  L    K     E  +    +T 
Sbjct: 1   SVSAGEKPPRLYDRRSIFDAVAQSNC---QELESLLPFLQRSKKRLTDSEFKDPETGKT- 56

Query: 159 YLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSK 218
                     L               +     G  + +  L+      +++ +    ++ 
Sbjct: 57  ---------CL------------LKAMLNLHNGQNDTIALLLDVARKTDSLKQ--FVNAS 93

Query: 219 PALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLA 278
                     AL  A+  R +++V LL++ G  +               G+  +   G  
Sbjct: 94  YTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAA----------ANGDFFKKTKGRP 143

Query: 279 EDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCNNARAVELLLN---C 335
             Y                               G   +  A   N    V+ LL     
Sbjct: 144 GFY------------------------------FGELPLSLAACTNQLAIVKFLLQNSWQ 173

Query: 336 AVDKEFPVQTYSKTELRPIHLAARLG---------SAKILRRLISAGCNINSRTAA---- 382
             D      +   T    +H    +             +   ++  G  ++         
Sbjct: 174 PADISAR-DSVGNT---VLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEIT 229

Query: 383 ---GETAAMICARYKHEECLKFLASEGAD 408
              G T   + A       L ++      
Sbjct: 230 NRKGLTPLALAASSGKIGVLAYILQREIH 258

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 90.9 bits (227), Expect = 5e-22
 Identities = 39/144 (27%), Positives = 57/144 (39%), Gaps = 34/144 (23%)

Query: 481 DEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVI 540
                DG +    AA  GH E  + LL  GA++  ++K G T                  
Sbjct: 3   MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTP----------------- 45

Query: 541 LEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHG 600
                            LH AAK G  ++V  L+++  DVNA   DG TP  LA K+GH 
Sbjct: 46  -----------------LHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHH 88

Query: 601 SVCQLLISSGAKCDIENARNETAL 624
            + +LL + GA  +  +  +    
Sbjct: 89  EIVKLLDAKGADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 74.3 bits (184), Expect = 3e-16
 Identities = 38/82 (46%), Positives = 52/82 (63%), Gaps = 6/82 (7%)

Query: 554 GFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKC 613
           G   LH AAK G  + V  L+S+  DVNA   DG TPL LAAK+GH  + +LL++ GA  
Sbjct: 9   GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA-- 66

Query: 614 DIENARNE---TALALARENGN 632
           D+ NAR++   T   LA++NG+
Sbjct: 67  DV-NARSKDGNTPEHLAKKNGH 87

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 69.3 bits (171), Expect = 2e-14
 Identities = 33/137 (24%), Positives = 50/137 (36%), Gaps = 37/137 (27%)

Query: 456 PLMFVTQANDVDALKKLIE-WADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIK 514
           PL    +    + +KKL+   ADV+   +  DG +   +AA  GH E  +LLL  GA++ 
Sbjct: 12  PLHNAAKNGHAEEVKKLLSKGADVN--ARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN 69

Query: 515 LQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLV 574
            ++K G T                                    H A K G  ++V  L 
Sbjct: 70  ARSKDGNT----------------------------------PEHLAKKNGHHEIVKLLD 95

Query: 575 SRCYDVNASDADGYTPL 591
           ++  DVNA         
Sbjct: 96  AKGADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 63.2 bits (155), Expect = 3e-12
 Identities = 32/97 (32%), Positives = 54/97 (55%), Gaps = 4/97 (4%)

Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
           +G T +H+A    +A  V+ LL+   D        SK    P+HLAA+ G A+I++ L++
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGADVNAR----SKDGNTPLHLAAKNGHAEIVKLLLA 63

Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGAD 408
            G ++N+R+  G T   +  +  H E +K L ++GAD
Sbjct: 64  KGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD 100

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 53.5 bits (130), Expect = 5e-09
 Identities = 20/52 (38%), Positives = 27/52 (51%)

Query: 581 NASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGN 632
                DG TPL  AAK+GH    + L+S GA  +  +    T L LA +NG+
Sbjct: 3   MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGH 54

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 51.6 bits (125), Expect = 3e-08
 Identities = 38/135 (28%), Positives = 46/135 (34%), Gaps = 35/135 (25%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKAGACQ 147
           T L  AA  G+   V+KLLS GA+VN +   G   T    A +  H EI+ LL+  GA  
Sbjct: 11  TPLHNAAKNGHAEEVKKLLSKGADVNARSKDGN--TPLHLAAKNGHAEIVKLLLAKGADV 68

Query: 148 EACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDAN 207
            A        S  G          T              A   G   +V  L   G D N
Sbjct: 69  NA-------RSKDGN---------T----------PEHLAKKNGHHEIVKLLDAKGADVN 102

Query: 208 AIDRVLLQSSKPALH 222
           A        S    H
Sbjct: 103 ARSW----GSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 45.1 bits (108), Expect = 5e-06
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 6/76 (7%)

Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQT-YSKTELRPIHLAARLGSAKILRRLI 370
           +G T +H A    +A  V+LLL    D     ++    T   P HLA + G  +I++ L 
Sbjct: 41  DGNTPLHLAAKNGHAEIVKLLLAKGADVN--ARSKDGNT---PEHLAKKNGHHEIVKLLD 95

Query: 371 SAGCNINSRTAAGETA 386
           + G ++N+R+      
Sbjct: 96  AKGADVNARSWGSSHH 111

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 87.0 bits (217), Expect = 5e-21
 Identities = 41/126 (32%), Positives = 60/126 (47%), Gaps = 34/126 (26%)

Query: 486 DGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYAL 545
           +G +   +AA  GH+E  +LLL AGA++  ++K G T                       
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP---------------------- 38

Query: 546 EEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQL 605
                       LH AA+ G  ++V  L+    DVNA D +G TPL LAA++GH  V +L
Sbjct: 39  ------------LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 86

Query: 606 LISSGA 611
           L+ +GA
Sbjct: 87  LLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 75.5 bits (187), Expect = 6e-17
 Identities = 33/79 (41%), Positives = 47/79 (59%)

Query: 554 GFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKC 613
           G   LH AA+ G  ++V  L+    DVNA D +G TPL LAA++GH  V +LL+ +GA  
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 614 DIENARNETALALARENGN 632
           + ++    T L LA  NG+
Sbjct: 62  NAKDKNGRTPLHLAARNGH 80

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 58.5 bits (143), Expect = 5e-11
 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 4/96 (4%)

Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
           NGRT +H A    +   V+LLL    D         K    P+HLAAR G  ++++ L+ 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVN----AKDKNGRTPLHLAARNGHLEVVKLLLE 56

Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGA 407
           AG ++N++   G T   + AR  H E +K L   GA
Sbjct: 57  AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 53.5 bits (130), Expect = 3e-09
 Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 3/83 (3%)

Query: 456 PLMFVTQANDVDALKKLIEW-ADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIK 514
           PL    +   ++ +K L+E  ADV+   +D +G +   +AA  GH+E  +LLL AGA++ 
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADVN--AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62

Query: 515 LQNKYGETAITLAELNRNGEVLE 537
            ++K G T + LA  N + EV++
Sbjct: 63  AKDKNGRTPLHLAARNGHLEVVK 85

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 52.7 bits (128), Expect = 6e-09
 Identities = 20/47 (42%), Positives = 30/47 (63%)

Query: 586 DGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGN 632
           +G TPL LAA++GH  V +LL+ +GA  + ++    T L LA  NG+
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 47

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 51.6 bits (125), Expect = 1e-08
 Identities = 27/58 (46%), Positives = 35/58 (60%), Gaps = 5/58 (8%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKAGA 145
           T L LAA  G+L +V+ LL  GA+VN K   G   T    A R  HLE++ LL++AGA
Sbjct: 37  TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR--TPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 50.8 bits (123), Expect = 3e-08
 Identities = 22/56 (39%), Positives = 34/56 (60%)

Query: 353 PIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGAD 408
           P+HLAAR G  ++++ L+ AG ++N++   G T   + AR  H E +K L   GAD
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 50.0 bits (121), Expect = 6e-08
 Identities = 27/58 (46%), Positives = 35/58 (60%), Gaps = 5/58 (8%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKAGA 145
           T L LAA  G+L +V+ LL  GA+VN K   G   T    A R  HLE++ LL++AGA
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR--TPLHLAARNGHLEVVKLLLEAGA 59

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 40.4 bits (96), Expect = 1e-04
 Identities = 34/130 (26%), Positives = 50/130 (38%), Gaps = 40/130 (30%)

Query: 383 GETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRS 442
           G T   + AR  H E +K L   GAD   +N            +  T             
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGAD---VN--------AKDKNGRT------------- 37

Query: 443 GNIIQSSNASRFSPLMFVTQANDVDALKKLIE-WADVDLDEQDADGFSAAMIAAAAGHVE 501
                        PL    +   ++ +K L+E  ADV+   +D +G +   +AA  GH+E
Sbjct: 38  -------------PLHLAARNGHLEVVKLLLEAGADVN--AKDKNGRTPLHLAARNGHLE 82

Query: 502 AFRLLLHAGA 511
             +LLL AGA
Sbjct: 83  VVKLLLEAGA 92

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 83.0 bits (206), Expect = 3e-19
 Identities = 35/144 (24%), Positives = 57/144 (39%), Gaps = 37/144 (25%)

Query: 494 AAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSA 553
            ++  H      L+  G+++                                        
Sbjct: 1   GSSHHHHHHSSGLVPRGSHM---GSDLGKK------------------------------ 27

Query: 554 GFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKC 613
               L  AA+ G  D V  L++   DV A D +G TPL LAA++GH  V +LL+ +GA  
Sbjct: 28  ----LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 83

Query: 614 DIENARNETALALARENGNGNEAE 637
             ++   +TA  ++ +NGN + AE
Sbjct: 84  XAQDKFGKTAFDISIDNGNEDLAE 107

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 66.8 bits (164), Expect = 1e-13
 Identities = 27/131 (20%), Positives = 49/131 (37%), Gaps = 39/131 (29%)

Query: 476 ADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEV 535
           + +      +D     + AA AG  +  R+L+  GA++  ++K G T             
Sbjct: 18  SHMG-----SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTP------------ 60

Query: 536 LEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAA 595
                                 LH AA+ G  ++V  L+    DV A D  G T   ++ 
Sbjct: 61  ----------------------LHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISI 98

Query: 596 KSGHGSVCQLL 606
            +G+  + ++L
Sbjct: 99  DNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 57.6 bits (140), Expect = 2e-10
 Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 3/89 (3%)

Query: 450 NASRFSPLMFVTQANDVDALKKLIEW-ADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLH 508
            +     L+   +A   D ++ L+   ADV    +D +G +   +AA  GH+E  +LLL 
Sbjct: 21  GSDLGKKLLEAARAGQDDEVRILMANGADVA--AKDKNGSTPLHLAARNGHLEVVKLLLE 78

Query: 509 AGANIKLQNKYGETAITLAELNRNGEVLE 537
           AGA++  Q+K+G+TA  ++  N N ++ E
Sbjct: 79  AGADVXAQDKFGKTAFDISIDNGNEDLAE 107

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 55.3 bits (134), Expect = 1e-09
 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 7/100 (7%)

Query: 324 NNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAG 383
           ++      L+         +          +  AAR G    +R L++ G ++ ++   G
Sbjct: 5   HHHHHSSGLVPRGSHMGSDLGK-------KLLEAARAGQDDEVRILMANGADVAAKDKNG 57

Query: 384 ETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIA 423
            T   + AR  H E +K L   GAD+   +  G+ A  I+
Sbjct: 58  STPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS 97

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 50.7 bits (122), Expect = 6e-08
 Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 5/58 (8%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKAGA 145
             L  AA AG    VR L++ GA+V  K   G   T    A R  HLE++ LL++AGA
Sbjct: 26  KKLLEAARAGQDDEVRILMANGADVAAKDKNGS--TPLHLAARNGHLEVVKLLLEAGA 81

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 48.7 bits (117), Expect = 2e-07
 Identities = 26/151 (17%), Positives = 48/151 (31%), Gaps = 43/151 (28%)

Query: 357 AARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAG 416
            +          L+  G ++ S         +  AR   ++ ++ L + GAD+   +  G
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGSD---LGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57

Query: 417 QCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEW- 475
                       T                          PL    +   ++ +K L+E  
Sbjct: 58  -----------ST--------------------------PLHLAARNGHLEVVKLLLEAG 80

Query: 476 ADVDLDEQDADGFSAAMIAAAAGHVEAFRLL 506
           ADV    QD  G +A  I+   G+ +   +L
Sbjct: 81  ADV--XAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 48.7 bits (117), Expect = 3e-07
 Identities = 22/115 (19%), Positives = 43/115 (37%), Gaps = 15/115 (13%)

Query: 288 VEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYS 347
                  G+           ++  +    +  A        V +L+    D         
Sbjct: 10  SSGLVPRGS-----------HMGSDLGKKLLEAARAGQDDEVRILMANGADVA-AKDKNG 57

Query: 348 KTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFL 402
            T   P+HLAAR G  ++++ L+ AG ++ ++   G+TA  I     +E+  + L
Sbjct: 58  ST---PLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 7/53 (13%), Positives = 17/53 (32%), Gaps = 8/53 (15%)

Query: 96  AAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKAGA 145
            +   +      L+  G+++               A R    + + +L+  GA
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGSD---LG--KKLLEAARAGQDDEVRILMANGA 48

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 78.3 bits (193), Expect = 4e-16
 Identities = 35/202 (17%), Positives = 61/202 (30%), Gaps = 40/202 (19%)

Query: 488 FSAAMIAAAAGHVEAFRLLLHAGANI----KLQNKYGETAITLAELNRNGEVLEQVILEY 543
           F      +  G       LL     +      +   G+T +  A LN +    + +    
Sbjct: 10  FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTI--PI 67

Query: 544 ALEEGQKGSA---------------GFYALHRAAKRGDFDLVHTLVSRCYDVNASD---- 584
            L+  +K                  G  ALH A +R     V  LV +  DV+A      
Sbjct: 68  LLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRF 127

Query: 585 ----------ADGYTPLMLAAKSGHGSVCQLLISSGA-KCDIENARNE---TALALAREN 630
                       G  PL LAA +    +   L  +G  + D+   ++    T L      
Sbjct: 128 FQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADL-RRQDSRGNTVLHALVAI 186

Query: 631 GNGNEAENVILDELALTLVLDG 652
            +        + ++   L++  
Sbjct: 187 ADNTRENTKFVTKMYDLLLIKC 208

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 76.4 bits (188), Expect = 2e-15
 Identities = 37/189 (19%), Positives = 62/189 (32%), Gaps = 44/189 (23%)

Query: 469 LKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNK---------- 518
              + E+ +    +    G +A  IA          LL+  GA++  Q +          
Sbjct: 75  TGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEG 134

Query: 519 ----YGETAITLAELNRNGEVLEQVILEYALEEGQ-------KGSAGFYALHRAAKRGD- 566
               +GE  ++LA            I+ Y  E G        + S G   LH      D 
Sbjct: 135 GYFYFGELPLSLAACTNQPH-----IVHYLTENGHKQADLRRQDSRGNTVLHALVAIADN 189

Query: 567 --------FDLVHTLVSRCYDVNAS-------DADGYTPLMLAAKSGHGSVCQLLISSGA 611
                     +   L+ +C  +          + DG +PLM+AAK+G   + Q +I    
Sbjct: 190 TRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREI 249

Query: 612 KCDIENARN 620
                 A +
Sbjct: 250 A--DAAAHH 256

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 69.0 bits (169), Expect = 4e-13
 Identities = 40/264 (15%), Positives = 73/264 (27%), Gaps = 65/264 (24%)

Query: 313 GRTLIHHAILCNNARA----VELLLNC---AVDKEFPVQTYSKTELRPIHLAARLGSAK- 364
            R ++   +   +       +  LL       D+EF   +  KT    +  A    SA  
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKT---CLPKALLNLSAGR 61

Query: 365 --ILRRLISAGC-----------NINSRTAAGETAAMICARYKHEECLKFLASEGADLGL 411
              +  L+                       G+TA  I    + +  ++ L  +GAD+  
Sbjct: 62  NDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-- 119

Query: 412 INYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKK 471
                   ++ A+   +    +                      PL      N    +  
Sbjct: 120 --------HAQARGRFFQPKDEGGYFYFGE-------------LPLSLAACTNQPHIVHY 158

Query: 472 LIE--WADVDLDEQDADGFSAAMIAAAAGH---------VEAFRLLLHAGANI------- 513
           L E      DL  QD+ G +      A             + + LLL   A +       
Sbjct: 159 LTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLE 218

Query: 514 KLQNKYGETAITLAELNRNGEVLE 537
            L N  G + + +A       + +
Sbjct: 219 ALLNNDGLSPLMMAAKTGKIGIFQ 242

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 61.7 bits (150), Expect = 1e-10
 Identities = 39/258 (15%), Positives = 77/258 (29%), Gaps = 63/258 (24%)

Query: 288 VEYFESSGA-ILHMLFQHISPNILHNGRTLIHHAILCNNA---RAVELLL----NCAVDK 339
           + +  +    +    F+  S      G+T +  A+L  +A     + +LL         +
Sbjct: 25  LSFLLTHKKRLTDEEFREPS-----TGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMR 79

Query: 340 EFPVQTYSKTELR---PIHLAARLGSAKILRRLISAGCNINSRTAA-------------- 382
           EF    +     R    +H+A        +  L+  G +++++                 
Sbjct: 80  EFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYF 139

Query: 383 GETAAMICARYKHEECLKFLASEG---ADLGLINYAGQ----CANSIAKSSRWTLGFQQA 435
           GE    + A       + +L   G   ADL   +  G        +IA ++R    F   
Sbjct: 140 GELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTK 199

Query: 436 VVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAA 495
           + D +                           A    +          + DG S  M+AA
Sbjct: 200 MYDLL-----------------------LIKCA---KLFPDTNLEALLNNDGLSPLMMAA 233

Query: 496 AAGHVEAFRLLLHAGANI 513
             G +  F+ ++      
Sbjct: 234 KTGKIGIFQHIIRREIAD 251

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 58.3 bits (141), Expect = 2e-09
 Identities = 49/302 (16%), Positives = 85/302 (28%), Gaps = 71/302 (23%)

Query: 91  TALFLAAHAGNLT----LVRKLLSLGANVNQKLFRGYAT------TAAV--REDHLEILD 138
             LF     G+      L+  LL+    +  + FR  +T       A +       + + 
Sbjct: 7   PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66

Query: 139 LLIKAGACQEACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDT 198
           +L+                         E + +           AL  A  R   + V+ 
Sbjct: 67  ILLDIAE---------------KTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVEL 111

Query: 199 LIKCGVDANAIDRVLLQSSKPALHANFD-CNALVGAVVSRQISVVRLLLQAGVKM-DIKV 256
           L++ G D +A  R      K      +     L  A  + Q  +V  L + G K  D++ 
Sbjct: 112 LVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLR- 170

Query: 257 RMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGA-ILHMLFQHISPNILHNGRT 315
                                 +D            S G  +LH L      N   N + 
Sbjct: 171 ---------------------RQD------------SRGNTVLHALVAIAD-NTRENTKF 196

Query: 316 LIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCN 375
           +     L     A    L    + E  +     +   P+ +AA+ G   I + +I     
Sbjct: 197 VTKMYDLLLIKCA---KLFPDTNLEALLNNDGLS---PLMMAAKTGKIGIFQHIIRREIA 250

Query: 376 IN 377
             
Sbjct: 251 DA 252

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 68.9 bits (168), Expect = 9e-13
 Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 3/84 (3%)

Query: 552 SAGFYALHRAAKRGD---FDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLIS 608
           +     LH A K  +     LV  ++     ++A  ADG T L  AA        +LL+ 
Sbjct: 188 APEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLK 247

Query: 609 SGAKCDIENARNETALALARENGN 632
             A     N   ETAL +AR+  +
Sbjct: 248 GRALVGTVNEAGETALDIARKKHH 271

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 60.0 bits (145), Expect = 7e-10
 Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 5/112 (4%)

Query: 318 HHAILCNNARAVELLLNCAVDKEFPVQTYSKTELR--PIHLAARLGSAK---ILRRLISA 372
             AI   +  +V        D   P+            +HLA ++ +     ++  +I  
Sbjct: 156 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN 215

Query: 373 GCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAK 424
           G +++++ A G TA    A Y   +CLK L    A +G +N AG+ A  IA+
Sbjct: 216 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIAR 267

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 51.1 bits (122), Expect = 6e-07
 Identities = 21/66 (31%), Positives = 30/66 (45%)

Query: 472 LIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNR 531
            I      LD + ADG +A   AA     +  +LLL   A +   N+ GETA+ +A    
Sbjct: 211 FIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKH 270

Query: 532 NGEVLE 537
           + E  E
Sbjct: 271 HKECEE 276

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 48.8 bits (116), Expect = 3e-06
 Identities = 23/161 (14%), Positives = 41/161 (25%), Gaps = 41/161 (25%)

Query: 456 PLMFVTQANDVDALKKLIEWADVDLDEQDAD----GFSAAMIAAAAGHVEAF---RLLLH 508
               +   + +  L+      D        D          +A    +  +      ++ 
Sbjct: 155 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 214

Query: 509 AGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFD 568
            G ++  +   G TA                                  LH AA     D
Sbjct: 215 NGGHLDAKAADGNTA----------------------------------LHYAALYNQPD 240

Query: 569 LVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISS 609
            +  L+     V   +  G T L +A K  H    +LL  +
Sbjct: 241 CLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQA 281

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 48.4 bits (115), Expect = 4e-06
 Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 9/103 (8%)

Query: 304 HISPNILHNGRTLIHHAILCNNAR---AVELLL-NCAVDKEFPVQTYSKTELRPIHLAAR 359
              P+       ++H A+   N      V+ ++ N         +         +H AA 
Sbjct: 181 LPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGG---HLDAKAADGN--TALHYAAL 235

Query: 360 LGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFL 402
                 L+ L+     + +   AGETA  I  +  H+EC + L
Sbjct: 236 YNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 278

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 68.5 bits (167), Expect = 1e-12
 Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 3/84 (3%)

Query: 552 SAGFYALHRAAKRGD---FDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLIS 608
                ALH A +  D     +V  LV    +++     G T L     + +    +LL+ 
Sbjct: 167 EPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLR 226

Query: 609 SGAKCDIENARNETALALARENGN 632
             A  +I N   ET L +A+   +
Sbjct: 227 GKASIEIANESGETPLDIAKRLKH 250

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 53.1 bits (127), Expect = 9e-08
 Identities = 27/112 (24%), Positives = 41/112 (36%), Gaps = 5/112 (4%)

Query: 318 HHAILCNNARAVELLLNCAVD-KEFPVQTYSKTELR-PIHLAARLGSAK---ILRRLISA 372
             A+   +   +       VD  E              +HLA R        I+  L+  
Sbjct: 135 CEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN 194

Query: 373 GCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAK 424
             N++ +T  G TA   C    + ECLK L    A + + N +G+    IAK
Sbjct: 195 SGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK 246

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 52.7 bits (126), Expect = 2e-07
 Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 13/106 (12%)

Query: 303 QHISPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELR------PIHL 356
           +    N      T +H A+   +  ++ ++       +F VQ     + +       +H 
Sbjct: 159 KIPLANGHEPDETALHLAVRSVDRTSLHIV-------DFLVQNSGNLDKQTGKGSTALHY 211

Query: 357 AARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFL 402
                +A+ L+ L+    +I     +GET   I  R KHE C + L
Sbjct: 212 CCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELL 257

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 27/151 (17%), Positives = 58/151 (38%), Gaps = 7/151 (4%)

Query: 389 ICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQS 448
           I A+Y      ++   + AD     +      ++     + L    A    +     + +
Sbjct: 110 ITAKYME---RRYARKKHADTAAKLH--SLCEAVKTRDIFGLLQAYADGVDLTEKIPLAN 164

Query: 449 SNASRFSPLMFVTQANDVDALKK--LIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLL 506
            +    + L    ++ D  +L     +     +LD+Q   G +A        + E  +LL
Sbjct: 165 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLL 224

Query: 507 LHAGANIKLQNKYGETAITLAELNRNGEVLE 537
           L   A+I++ N+ GET + +A+  ++    E
Sbjct: 225 LRGKASIEIANESGETPLDIAKRLKHEHCEE 255

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 51.5 bits (123), Expect = 4e-07
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)

Query: 520 GETAITLAEL--NRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRC 577
            ETA+ LA    +R    +   +++ +    ++   G  ALH      + + +  L+   
Sbjct: 169 DETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGK 228

Query: 578 YDVNASDADGYTPLMLAAKSGHGSVCQLLISS 609
             +  ++  G TPL +A +  H    +LL  +
Sbjct: 229 ASIEIANESGETPLDIAKRLKHEHCEELLTQA 260

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 41.5 bits (97), Expect = 5e-04
 Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 9/105 (8%)

Query: 542 EYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNA------SDADGYTPLMLAA 595
            YA ++    +A  ++L  A K  D   +    +   D+              T L LA 
Sbjct: 118 RYARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAV 177

Query: 596 KSGHGS---VCQLLISSGAKCDIENARNETALALARENGNGNEAE 637
           +S   +   +   L+ +    D +  +  TAL       N    +
Sbjct: 178 RSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLK 222

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 67.9 bits (165), Expect = 3e-12
 Identities = 19/79 (24%), Positives = 29/79 (36%)

Query: 554 GFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKC 613
               L +A           L+    +VN +D+ G  PL  A   GH  +  L +  GA  
Sbjct: 235 NATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADL 294

Query: 614 DIENARNETALALARENGN 632
              ++     L +A E  N
Sbjct: 295 GARDSEGRDPLTIAMETAN 313

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 58.6 bits (141), Expect = 3e-09
 Identities = 24/125 (19%), Positives = 36/125 (28%), Gaps = 2/125 (1%)

Query: 302 FQHISPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLG 361
                   LH G  L   +    +   +   L    D  +           P+  A    
Sbjct: 189 PPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNA--TPLIQATAAN 246

Query: 362 SAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANS 421
           S      L+  G N+N   +AG           H          GADLG  +  G+   +
Sbjct: 247 SLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLT 306

Query: 422 IAKSS 426
           IA  +
Sbjct: 307 IAMET 311

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 56.7 bits (136), Expect = 1e-08
 Identities = 38/225 (16%), Positives = 67/225 (29%), Gaps = 37/225 (16%)

Query: 392 RYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNA 451
             K+ E  KFL       G     G+         + ++  +   + S          + 
Sbjct: 139 HAKYVE-KKFLTKLPEIRGRRGGRGRPRGQPPVPPKPSIRPRPGSLRSKPEPPSEDLGSL 197

Query: 452 SRFSPLMF-VTQANDVDALKKLIEW-ADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHA 509
              + L         +  +   +   ADV+      D  +  + A AA  + A   LL  
Sbjct: 198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQN 257

Query: 510 GANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDL 569
           GAN+   +  G                                     LH A   G   L
Sbjct: 258 GANVNQADSAGRGP----------------------------------LHHATILGHTGL 283

Query: 570 VHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCD 614
               + R  D+ A D++G  PL +A ++ +  +  LL  +  +  
Sbjct: 284 ACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREA 328

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 54.0 bits (129), Expect = 8e-08
 Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 5/118 (4%)

Query: 447 QSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLL 506
            +      +PL+  T AN + A + L+     ++++ D+ G      A   GH     L 
Sbjct: 229 VNGGQDNATPLIQATAANSLLACEFLL-QNGANVNQADSAGRGPLHHATILGHTGLACLF 287

Query: 507 LHAGANIKLQNKYGETAITLAELNRNGEVLEQVIL----EYALEEGQKGSAGFYALHR 560
           L  GA++  ++  G   +T+A    N +++  + L    E    +GQ G   +  + R
Sbjct: 288 LKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFR 345

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 50.2 bits (119), Expect = 1e-06
 Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 6/98 (6%)

Query: 306 SPNILHNGRTLIHHAILCNNARAVELLL-NCAVDKEFPVQTYSKTELRPIHLAARLGSAK 364
             N   +  T +  A   N+  A E LL N A          +     P+H A  LG   
Sbjct: 228 WVNGGQDNATPLIQATAANSLLACEFLLQNGA---NVNQADSAGR--GPLHHATILGHTG 282

Query: 365 ILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFL 402
           +    +  G ++ +R + G     I     + + +  L
Sbjct: 283 LACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 42.1 bits (98), Expect = 5e-04
 Identities = 21/61 (34%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGY-ATTAAVREDHLEILDLLIKAGACQEA 149
           T L  A  A +L     LL  GANVNQ    G      A    H  +  L +K GA   A
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296

Query: 150 C 150
            
Sbjct: 297 R 297

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 41.7 bits (97), Expect = 6e-04
 Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 2/83 (2%)

Query: 552 SAGFYALHRAAKRGDFDLVHTLVSRCYDVNA--SDADGYTPLMLAAKSGHGSVCQLLISS 609
             G      +        +   ++   DVN      D  TPL+ A  +     C+ L+ +
Sbjct: 198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQN 257

Query: 610 GAKCDIENARNETALALARENGN 632
           GA  +  ++     L  A   G+
Sbjct: 258 GANVNQADSAGRGPLHHATILGH 280

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 58.0 bits (140), Expect = 6e-09
 Identities = 23/95 (24%), Positives = 35/95 (36%), Gaps = 3/95 (3%)

Query: 541 LEYALEEGQKGSAGFYALHRAAKRGDFDLVHT---LVSRCYDVNASDADGYTPLMLAAKS 597
               L      +     LH A K  +   +     ++     ++A  ADG T L  AA  
Sbjct: 158 FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALY 217

Query: 598 GHGSVCQLLISSGAKCDIENARNETALALARENGN 632
                 +LL+   A     N   ETAL +AR+  +
Sbjct: 218 NQPDCLKLLLKGRALVGTVNEAGETALDIARKKHH 252

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 55.3 bits (133), Expect = 4e-08
 Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 5/116 (4%)

Query: 317 IHHAILCNNARAVELLLNCAVDKEFPV-QTYSKTELR-PIHLAARL---GSAKILRRLIS 371
           +  AI   +  +V        D   P+    ++      +HLA ++    S  ++  +I 
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195

Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSR 427
            G +++++ A G TA    A Y   +CLK L    A +G +N AG+ A  IA+   
Sbjct: 196 NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKH 251

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 21/66 (31%), Positives = 30/66 (45%)

Query: 472 LIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNR 531
            I      LD + ADG +A   AA     +  +LLL   A +   N+ GETA+ +A    
Sbjct: 192 FIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKH 251

Query: 532 NGEVLE 537
           + E  E
Sbjct: 252 HKECEE 257

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 1e-06
 Identities = 75/514 (14%), Positives = 143/514 (27%), Gaps = 174/514 (33%)

Query: 213 LLQSSKPALHANFDCNA---LVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWDMDTGE 269
           +L   + A   NFDC     +  +++S++   +  ++ +            W+  +   E
Sbjct: 21  ILSVFEDAFVDNFDCKDVQDMPKSILSKE--EIDHIIMSK-DAVSGTLRLFWTL-LSKQE 76

Query: 270 ELR---VGAGLAEDYCITWCA----VEYFESSGAILHMLFQHISPNILHNGRTLIHHAIL 322
           E+    V   L  +Y   +       E  + S      + Q    + L+N          
Sbjct: 77  EMVQKFVEEVLRINY--KFLMSPIKTEQRQPSMMTRMYIEQR---DRLYND--------- 122

Query: 323 CNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS---------AG 373
                                Q ++K  +  +    +L  A  L  L            G
Sbjct: 123 --------------------NQVFAKYNVSRLQPYLKLRQA--LLELRPAKNVLIDGVLG 160

Query: 374 CNINSRTAAGET--AAMICARYKHEECLKFLASEGADLGL--INYAGQCANSIAKSSRWT 429
                    G+T  A  +C  YK +  + F         +  +N    C      S    
Sbjct: 161 S--------GKTWVALDVCLSYKVQCKMDF--------KIFWLNL-KNC-----NSPETV 198

Query: 430 LGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDV-DALKKLIEWAD-----VDLDE- 482
           L   Q ++  I   N    S+ S    L    + + +   L++L++        + L   
Sbjct: 199 LEMLQKLLYQIDP-NWTSRSDHSSNIKL----RIHSIQAELRRLLKSKPYENCLLVLLNV 253

Query: 483 QDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVIL- 541
           Q+A                AF        N+  +       +T     R  +V + +   
Sbjct: 254 QNAK------------AWNAF--------NLSCK-----ILLT----TRFKQVTDFLSAA 284

Query: 542 ---EYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASD----ADGYTPLMLA 594
                +L+           L     +        L+ +  D    D         P  L+
Sbjct: 285 TTTHISLDHHSMT------LTPDEVKS-------LLLKYLDCRPQDLPREVLTTNPRRLS 331

Query: 595 AKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTY 654
                      +I          A  +    +     N ++   +I  E +L  VL+   
Sbjct: 332 -----------II--AESIRDGLATWDNWKHV-----NCDKLTTII--ESSLN-VLEPAE 370

Query: 655 VKKH-TKCGKGSPHVK----LLKM-WGKSRKRNV 682
            +K   +     P       LL + W    K +V
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	758
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2etb_A	256	Transient receptor potential cation channel subfam	99.98
2etb_A	256	Transient receptor potential cation channel subfam	99.98
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.94
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.93
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.93
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.93
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.92
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.92
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.91
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.9
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.9
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.89
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.89
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.89
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.88
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.87
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.87
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.87
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.87
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.86
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.86
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.86
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.85
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.85
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.85
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.85
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.84
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.83
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.83
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.83
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.82
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.81
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.81
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.81
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.78
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.74
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.66

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2e-64  Score=550.75  Aligned_cols=387  Identities=25%  Similarity=0.325  Sum_probs=362.7

Q ss_pred             CCCCCchHHHHHHhcCCHHHHHHHHhCCCCCCcchhhhhhccccccccCCCCchhHHHHhcCCHHHHHHHHHcCCCCccc
Q 035705          176 RPQVSVHALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIK  255 (758)
Q Consensus       176 ~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~d~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~  255 (758)
                      .+..|.||||+|+..|+.++|++|+++|++++..+             ..+.||||+|+..|+.++|++|+++|++++.+
T Consensus        10 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~-------------~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~   76 (437)
T 1n11_A           10 GGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSN-------------VKVETPLHMAARAGHTEVAKYLLQNKAKVNAK   76 (437)
T ss_dssp             -----CCHHHHHHHHTCHHHHHHHHHTTCCSCCSS-------------SCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCC
T ss_pred             cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCC-------------CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC
Confidence            45678999999999999999999999999999887             45999999999999999999999999999875


Q ss_pred             cccCccccccccchhhhhhccccccccccchhhhhhhchHHHHHHHhhccCCCCCCCCchHHHHHHHcCCHHHHHHHHHc
Q 035705          256 VRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCNNARAVELLLNC  335 (758)
Q Consensus       256 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  335 (758)
                                                                            +..|.||||+|+..|+.++|++|+++
T Consensus        77 ------------------------------------------------------~~~g~t~L~~A~~~g~~~~v~~Ll~~  102 (437)
T 1n11_A           77 ------------------------------------------------------AKDDQTPLHCAARIGHTNMVKLLLEN  102 (437)
T ss_dssp             ------------------------------------------------------CTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             ------------------------------------------------------CCCCCCHHHHHHHCCCHHHHHHHHhC
Confidence                                                                  34678999999999999999999999


Q ss_pred             cCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccC
Q 035705          336 AVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYA  415 (758)
Q Consensus       336 g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~  415 (758)
                      |++++.    .+..|.||||+|+..|+.+++++|++++++++..+..|.||||+|+..|+.+++++|+++|++++..+..
T Consensus       103 ga~~~~----~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~  178 (437)
T 1n11_A          103 NANPNL----ATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN  178 (437)
T ss_dssp             TCCTTC----CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSS
T ss_pred             CCCCCC----CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC
Confidence            999876    6789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHH
Q 035705          416 GQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAA  495 (758)
Q Consensus       416 g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~  495 (758)
                      |.||||+|+.    .+..+++++|++.|.+++..+..|.||||+|+..++.+++++|++. |.+++..+..|.||||+|+
T Consensus       179 g~t~L~~A~~----~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~  253 (437)
T 1n11_A          179 GLTPLHVAVH----HNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQY-GGSANAESVQGVTPLHLAA  253 (437)
T ss_dssp             CCCHHHHHHH----TTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHH
T ss_pred             CCCHHHHHHH----cCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHH
Confidence            9999999965    4678999999999999999999999999999999999999999998 8999999999999999999


Q ss_pred             HcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHh
Q 035705          496 AAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVS  575 (758)
Q Consensus       496 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  575 (758)
                      ..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+. .+.+++..+..|+||||+|+..|+.++|++|++
T Consensus       254 ~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  332 (437)
T 1n11_A          254 QEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK-HGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ  332 (437)
T ss_dssp             HTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-HTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHH
T ss_pred             HCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh-CCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            9999999999999999999999999999999999999999997765 578899999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHH
Q 035705          576 RCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENV  639 (758)
Q Consensus       576 ~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~l  639 (758)
                      +|+++|.+|..|+||||+|+..|+.++|++|+++|++++.+|.+|+|||++|++.|+.++++.|
T Consensus       333 ~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~~~~~~~l  396 (437)
T 1n11_A          333 HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL  396 (437)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCcHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999866643

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.4e-63  Score=542.23  Aligned_cols=387  Identities=21%  Similarity=0.272  Sum_probs=357.8

Q ss_pred             hCCCCCCcchhhhhhccccccccCCCCchhHHHHhcCCHHHHHHHHHcCCCCccccccCccccccccchhhhhhcccccc
Q 035705          201 KCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAED  280 (758)
Q Consensus       201 ~~g~d~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  280 (758)
                      +.|++++..+             ..|.||||+|+..|+.++|++|+++|++++..                         
T Consensus         2 ~~g~~~~~~~-------------~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~-------------------------   43 (437)
T 1n11_A            2 SPGISGGGGG-------------ESGLTPLHVASFMGHLPIVKNLLQRGASPNVS-------------------------   43 (437)
T ss_dssp             --------------------------CCHHHHHHHHTCHHHHHHHHHTTCCSCCS-------------------------
T ss_pred             CCCCCccccC-------------CCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCC-------------------------
Confidence            3578888877             45999999999999999999999999999865                         


Q ss_pred             ccccchhhhhhhchHHHHHHHhhccCCCCCCCCchHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHc
Q 035705          281 YCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARL  360 (758)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~  360 (758)
                                                   +..|.||||+|+..|+.+++++|+++|++++.    .+..|.||||+|+..
T Consensus        44 -----------------------------~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~----~~~~g~t~L~~A~~~   90 (437)
T 1n11_A           44 -----------------------------NVKVETPLHMAARAGHTEVAKYLLQNKAKVNA----KAKDDQTPLHCAARI   90 (437)
T ss_dssp             -----------------------------SSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSC----CCTTSCCHHHHHHHH
T ss_pred             -----------------------------CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC----CCCCCCCHHHHHHHC
Confidence                                         34678999999999999999999999999876    688999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHH
Q 035705          361 GSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSI  440 (758)
Q Consensus       361 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll  440 (758)
                      |+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++++++++..+..|.||||+|+.    .+..+++++|+
T Consensus        91 g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~----~g~~~~v~~Ll  166 (437)
T 1n11_A           91 GHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAK----YGKVRVAELLL  166 (437)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHH----TTCHHHHHHHH
T ss_pred             CCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHH----cCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999965    47899999999


Q ss_pred             HcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCC
Q 035705          441 RSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYG  520 (758)
Q Consensus       441 ~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g  520 (758)
                      +.|++++..+..|.||||+|+..++.+++++|+++ +.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|
T Consensus       167 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g  245 (437)
T 1n11_A          167 ERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR-GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQG  245 (437)
T ss_dssp             HTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGG-TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred             hCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Confidence            99999999999999999999999999999999998 89999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcH
Q 035705          521 ETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHG  600 (758)
Q Consensus       521 ~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~  600 (758)
                      .||||+|+..|+.+++++|+. .+.+.+..+..|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.
T Consensus       246 ~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~  324 (437)
T 1n11_A          246 VTPLHLAAQEGHAEMVALLLS-KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNI  324 (437)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCS
T ss_pred             CCHHHHHHHCCCHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcH
Confidence            999999999999999997765 5778889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCccccccccCCCcchHHHHHH
Q 035705          601 SVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHTKCGKGSPHVKLLKM  673 (758)
Q Consensus       601 ~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~~~~~d~~g~t~l~~a~~~~  673 (758)
                      ++|++|+++|+|+|.+|..|+||||+|+..|+.+         ++++|+++|++++.+|..|+||+++|....
T Consensus       325 ~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~---------iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g  388 (437)
T 1n11_A          325 KLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTD---------IVTLLLKNGASPNEVSSDGTTPLAIAKRLG  388 (437)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH---------HHHHHHHTTCCSCCCCSSSCCHHHHHHHTT
T ss_pred             HHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHH---------HHHHHHHCcCCCCCCCCCCCCHHHHHHHcC
Confidence            9999999999999999999999999999999986         667889999999999999999999987643

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=2e-48  Score=408.58  Aligned_cols=303  Identities=26%  Similarity=0.335  Sum_probs=275.1

Q ss_pred             CCchhHHHHhcCCHHHHHHHHHcCCCCccccccCccccccccchhhhhhccccccccccchhhhhhhchHHHHHHHhhcc
Q 035705          226 DCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHI  305 (758)
Q Consensus       226 ~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  305 (758)
                      |.|||+.|++.|+.++|++|+++|++++..+                                                 
T Consensus        25 ~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~-------------------------------------------------   55 (337)
T 4g8k_A           25 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQE-------------------------------------------------   55 (337)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHTCCTTCCC-------------------------------------------------
T ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCCCccC-------------------------------------------------
Confidence            6799999999999999999999999998763                                                 


Q ss_pred             CCCCCCCCchHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCc
Q 035705          306 SPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGET  385 (758)
Q Consensus       306 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t  385 (758)
                          +..|+||||+|+..|+.++|++|+++|++++.    .+..+.+|++.++..+...++..+++.+++++..|..|.|
T Consensus        56 ----~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t  127 (337)
T 4g8k_A           56 ----EEGGWTPLHNAVQMSREDIVELLLRHGADPVL----RKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFT  127 (337)
T ss_dssp             ----TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC----CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCB
T ss_pred             ----CCCCcCHHHHHHHcCCHHHHHHHHHcCCchhh----hccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCC
Confidence                24588999999999999999999999999886    6889999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCC
Q 035705          386 AAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQAND  465 (758)
Q Consensus       386 ~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~  465 (758)
                      |||+|+..|+.+++++|+++|++++..+....                           +....+..|.||||+|+..|+
T Consensus       128 ~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~---------------------------~~~~~~~~g~T~L~~A~~~g~  180 (337)
T 4g8k_A          128 AFMEAAVYGKVKALKFLYKRGANVNLRRKTKE---------------------------DQERLRKGGATALMDAAEKGH  180 (337)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC--------------------------------CTTCSCCHHHHHHHHTC
T ss_pred             HHHHHHHcCcHHHHHHHHHcCCCcchhhcccc---------------------------ccccccCCCCcHHHHHHHCCC
Confidence            99999999999999999999999887654432                           234456788999999999999


Q ss_pred             HHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCC----HHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHH
Q 035705          466 VDALKKLIEWADVDLDEQDADGFSAAMIAAAAGH----VEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVIL  541 (758)
Q Consensus       466 ~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~  541 (758)
                      .+++++|+++.|++++.++..|.|+++.++..+.    ..++++|+++|++++.++..|+||||+|+..|+.++++.|+.
T Consensus       181 ~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~  260 (337)
T 4g8k_A          181 VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE  260 (337)
T ss_dssp             HHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHH
Confidence            9999999987799999999999999998876544    468899999999999999999999999999999999999999


Q ss_pred             hhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCC
Q 035705          542 EYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIEN  617 (758)
Q Consensus       542 ~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d  617 (758)
                      ..+.+++..|..|+||||+|++.|+.++|++|+++|+++|.+     ||||+|+..|+.++|++||++|||+|...
T Consensus       261 ~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll~~GA~~d~~~  331 (337)
T 4g8k_A          261 QEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG-----DLVMTARRNYDHSLVKVLLSHGAKEDFHP  331 (337)
T ss_dssp             STTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTC-----CHHHHHHHTTCHHHHHHHHHTTCCC----
T ss_pred             hcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-----CHHHHHHHcCCHHHHHHHHHCcCCCCCCC
Confidence            999999999999999999999999999999999999999864     59999999999999999999999998743

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=6.5e-46  Score=389.44  Aligned_cols=293  Identities=26%  Similarity=0.365  Sum_probs=252.7

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 035705          311 HNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMIC  390 (758)
Q Consensus       311 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  390 (758)
                      .+|.|+||.|+..|++++|++||++|++++..   .+..|+||||+|+..|+.++|++|+++|++++.++..+.+|++.+
T Consensus        23 ~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~---~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~   99 (337)
T 4g8k_A           23 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQ---EEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILA   99 (337)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCC---CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             CCCChHHHHHHHcCCHHHHHHHHHCCCCCCcc---CCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHH
Confidence            35789999999999999999999999998863   234689999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHH
Q 035705          391 ARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALK  470 (758)
Q Consensus       391 ~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~  470 (758)
                      +..+...++..+++.+++++..+..|.|                                     |||+|+..|+.++++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~d~~g~t-------------------------------------~l~~A~~~~~~~~~~  142 (337)
T 4g8k_A          100 AIAGSVKLLKLFLSKGADVNECDFYGFT-------------------------------------AFMEAAVYGKVKALK  142 (337)
T ss_dssp             HHHTCHHHHHHHHTTTCCTTCBCTTCCB-------------------------------------HHHHHHHTTCHHHHH
T ss_pred             HhcccchhhHHhhhccchhhhhccCCCC-------------------------------------HHHHHHHcCcHHHHH
Confidence            9999999999999988888777666654                                     555556666666666


Q ss_pred             HHHHhcCCCCcc----------cCCCCCcHHHHHHHcCCHHHHHHHHh-CCCCCCcCCCCCCcHHHHHHHcCC---hhHH
Q 035705          471 KLIEWADVDLDE----------QDADGFSAAMIAAAAGHVEAFRLLLH-AGANIKLQNKYGETAITLAELNRN---GEVL  536 (758)
Q Consensus       471 ~Ll~~~~~~~~~----------~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~---~~~v  536 (758)
                      +|+++ |++++.          .+..|.||||+|+..|+.++|++|++ .|++++.++..|.|+++.++..+.   .+.+
T Consensus       143 ~ll~~-ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i  221 (337)
T 4g8k_A          143 FLYKR-GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAI  221 (337)
T ss_dssp             HHHHT-TCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHH
T ss_pred             HHHHc-CCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHH
Confidence            66665 555543          45678999999999999999999995 599999999999999998877544   3445


Q ss_pred             HHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCC
Q 035705          537 EQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSR-CYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDI  615 (758)
Q Consensus       537 ~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~  615 (758)
                      ..+|.+.+.+++..+..|+||||+|+..|+.+++++|++. |+++|.+|..|+||||+|++.|+.++|++|+++|||+|.
T Consensus       222 ~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~  301 (337)
T 4g8k_A          222 THLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC  301 (337)
T ss_dssp             HHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTT
T ss_pred             HHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            5567788999999999999999999999999999999985 799999999999999999999999999999999999976


Q ss_pred             CCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCccccc
Q 035705          616 ENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKH  658 (758)
Q Consensus       616 ~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~~~~~  658 (758)
                      +     ||||+|+++|+.+         ++++|+++||++|..
T Consensus       302 ~-----~~L~~A~~~~~~~---------iv~~Ll~~GA~~d~~  330 (337)
T 4g8k_A          302 G-----DLVMTARRNYDHS---------LVKVLLSHGAKEDFH  330 (337)
T ss_dssp             C-----CHHHHHHHTTCHH---------HHHHHHHTTCCC---
T ss_pred             C-----CHHHHHHHcCCHH---------HHHHHHHCcCCCCCC
Confidence            4     6999999999986         677999999999864

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.8e-44  Score=381.27  Aligned_cols=324  Identities=25%  Similarity=0.253  Sum_probs=267.6

Q ss_pred             CCCchhHHHHhcCCHHHHHHHHHc-CCCCccccccCccccccccchhhhhhccccccccccchhhhhhhchHHHHHHHhh
Q 035705          225 FDCNALVGAVVSRQISVVRLLLQA-GVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQ  303 (758)
Q Consensus       225 ~~~t~L~~A~~~g~~~iv~~Ll~~-ga~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~  303 (758)
                      .+.|+|+.|+..|+.+.|+.|+.. +++++..                                                
T Consensus        23 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~------------------------------------------------   54 (351)
T 3utm_A           23 YKKDELLEAARSGNEEKLMALLTPLNVNCHAS------------------------------------------------   54 (351)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCS------------------------------------------------
T ss_pred             ccchhHHHHHHcCCHHHHHHHHHhcCCCcccC------------------------------------------------
Confidence            478999999999999999999887 7777764                                                


Q ss_pred             ccCCCCCCCCchHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Q 035705          304 HISPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAG  383 (758)
Q Consensus       304 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g  383 (758)
                            +..|.||||+|+..|+.++|++|+++|++++.    .+..|.||||+|+..|+.+++++|+++|++++..+..|
T Consensus        55 ------d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~----~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g  124 (351)
T 3utm_A           55 ------DGRKSTPLHLAAGYNRVRIVQLLLQHGADVHA----KDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQ  124 (351)
T ss_dssp             ------STTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC----CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred             ------CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc----cCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCC
Confidence                  45788999999999999999999999999876    68899999999999999999999999999999999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHc
Q 035705          384 ETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQA  463 (758)
Q Consensus       384 ~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~  463 (758)
                      .||||+|+..|+.+++++|+++|++++..+..|.+|++++.    ..+..+.+.+....            +++..++..
T Consensus       125 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~----~~~~~~~~~~~~~~------------~~~~~~~~~  188 (351)
T 3utm_A          125 FTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAP----TPELRERLTYEFKG------------HSLLQAARE  188 (351)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCS----SHHHHHHHHHHHHH------------HHHHHHHHT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHh----hhhhHHHHHhhhcc------------cHHHHHHHh
Confidence            99999999999999999999999999999999999999994    34455555554432            578888999


Q ss_pred             CCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHc---CCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHH
Q 035705          464 NDVDALKKLIEWADVDLDEQDADGFSAAMIAAAA---GHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVI  540 (758)
Q Consensus       464 ~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll  540 (758)
                      ++.+.++.++... ......+..|.||||+|+..   +..+++++|++.|++++.++..|.||||+|+..|+.+++++|+
T Consensus       189 ~~~~~~~~~l~~~-~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  267 (351)
T 3utm_A          189 ADLAKVKKTLALE-IINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLH  267 (351)
T ss_dssp             TCHHHHHHHTTTC-CTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHhh-cccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            9999999999873 44445678899999999998   5589999999999999999999999999999999998888666


Q ss_pred             HhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCC
Q 035705          541 LEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARN  620 (758)
Q Consensus       541 ~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g  620 (758)
                       +.+.+++..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||+++|    +.+++++|.+.+..   ....+
T Consensus       268 -~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a----~~~~~~~l~~~~~~---~~~~~  339 (351)
T 3utm_A          268 -KHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG----NEAVQQILSESTPM---RTSDV  339 (351)
T ss_dssp             -HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHS----CHHHHHHHHHC-----------
T ss_pred             -HCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhh----hHHHHHHHHhcccc---ccCcc
Confidence             46778888888888999999988899999999998988888888889988887    67788888887554   34567


Q ss_pred             CcHHHHHHHCC
Q 035705          621 ETALALARENG  631 (758)
Q Consensus       621 ~t~L~~A~~~~  631 (758)
                      .++|..|++.|
T Consensus       340 ~~~l~~A~~~g  350 (351)
T 3utm_A          340 DYRLLEASKAG  350 (351)
T ss_dssp             -----------
T ss_pred             eeehhhhhccC
Confidence            78888888776

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=7e-44  Score=364.88  Aligned_cols=275  Identities=24%  Similarity=0.266  Sum_probs=175.9

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 035705          312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICA  391 (758)
Q Consensus       312 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  391 (758)
                      +|.||||.|+..|+.+++++|++.|++++..   .+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~---~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   80 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQ---EEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAA   80 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCC---CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCcccc---cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            4667777777777777777777776666542   2556667777777777777777777777776666666667777776


Q ss_pred             HcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHH
Q 035705          392 RYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKK  471 (758)
Q Consensus       392 ~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~  471 (758)
                      ..|+.+++++|+++|++++..+..                                     |.||||+|+..|+.+++++
T Consensus        81 ~~~~~~~v~~Ll~~g~~~~~~~~~-------------------------------------g~t~L~~A~~~~~~~~~~~  123 (285)
T 1wdy_A           81 IAGSVKLLKLFLSKGADVNECDFY-------------------------------------GFTAFMEAAVYGKVKALKF  123 (285)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCBCTT-------------------------------------CCBHHHHHHHTTCHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCCCccCcc-------------------------------------cCCHHHHHHHhCCHHHHHH
Confidence            666666666666666555433322                                     2345555555555555555


Q ss_pred             HHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCC
Q 035705          472 LIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKG  551 (758)
Q Consensus       472 Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~  551 (758)
                      |++. +++++..+....                       +....+..|.||||+|+..|+.+++++|+...+.+++..+
T Consensus       124 Ll~~-g~~~~~~~~~~~-----------------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~  179 (285)
T 1wdy_A          124 LYKR-GANVNLRRKTKE-----------------------DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACD  179 (285)
T ss_dssp             HHHT-TCCTTCCCCCCH-----------------------HHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCC
T ss_pred             HHHh-CCCcccccccHH-----------------------HHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccC
Confidence            5555 455544410000                       0000034455555555555555555555544455555555


Q ss_pred             CCCchHHHHHHHcCC----HHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHh-CCCCCCCCCCCCCcHHHH
Q 035705          552 SAGFYALHRAAKRGD----FDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLIS-SGAKCDIENARNETALAL  626 (758)
Q Consensus       552 ~~g~t~L~~A~~~g~----~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~-~gad~~~~d~~g~t~L~~  626 (758)
                      ..|.||||+|+..++    .+++++|+++|++++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+
T Consensus       180 ~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~  259 (285)
T 1wdy_A          180 NMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLL  259 (285)
T ss_dssp             TTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHH
T ss_pred             CCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHH
Confidence            556666666666666    777788888888888888888888888888888888888887 788888888888888888


Q ss_pred             HHHCCChhhHHHHHHHHHHHHHHhCCCcccccc
Q 035705          627 ARENGNGNEAENVILDELALTLVLDGTYVKKHT  659 (758)
Q Consensus       627 A~~~~~~~~~~~ll~~~~~~~L~~~g~~~~~~d  659 (758)
                      |++.++.+         ++++|+++|++++.+|
T Consensus       260 A~~~~~~~---------i~~~Ll~~Ga~~~~~d  283 (285)
T 1wdy_A          260 AVELKLKK---------IAELLCKRGASTDCGD  283 (285)
T ss_dssp             HHHTTCHH---------HHHHHHHHSSCSCCSS
T ss_pred             HHHcCcHH---------HHHHHHHcCCCCCccc
Confidence            88887775         5557777788877766

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.1e-43  Score=360.05  Aligned_cols=264  Identities=27%  Similarity=0.347  Sum_probs=211.4

Q ss_pred             hhhhchHHHHHHHhhcc-CCC--CCCCCchHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHH
Q 035705          289 EYFESSGAILHMLFQHI-SPN--ILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKI  365 (758)
Q Consensus       289 ~~~~~~~~~~~~ll~~~-~~~--~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~  365 (758)
                      ....+..+++++|++.. +++  .+..|.||||+|+..|+.+++++|+++|++++.    .+..|.||||+|+..|+.++
T Consensus        12 A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~----~~~~g~t~L~~A~~~~~~~~   87 (285)
T 1wdy_A           12 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL----RKKNGATPFLLAAIAGSVKL   87 (285)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC----CCTTCCCHHHHHHHHTCHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcc----cCCCCCCHHHHHHHcCCHHH
Confidence            44566778999999983 333  267789999999999999999999999999876    68899999999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCC
Q 035705          366 LRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNI  445 (758)
Q Consensus       366 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~  445 (758)
                      +++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+....                           .
T Consensus        88 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~---------------------------~  140 (285)
T 1wdy_A           88 LKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE---------------------------D  140 (285)
T ss_dssp             HHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCH---------------------------H
T ss_pred             HHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHH---------------------------H
Confidence            9999999999999999999999999999999999999999999876543221                           0


Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCC----HHHHHHHHhCCCCCCcCCCCCC
Q 035705          446 IQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGH----VEAFRLLLHAGANIKLQNKYGE  521 (758)
Q Consensus       446 ~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~g~~~~~~~~~g~  521 (758)
                      ....+..|.||||.|+..|+.+++++|++..+++++..+..|.||||+|+..++    .+++++|+++|++++.++..  
T Consensus       141 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~--  218 (285)
T 1wdy_A          141 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGER--  218 (285)
T ss_dssp             HHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTT--
T ss_pred             HHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCC--
Confidence            122355677777777777777777777776667777777777777777777777    67777777777776666554  


Q ss_pred             cHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHh-cCCCCCCCCCCCCcHHHHHHHcCcH
Q 035705          522 TAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVS-RCYDVNASDADGYTPLMLAAKSGHG  600 (758)
Q Consensus       522 t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~n~~d~~g~tpL~~A~~~~~~  600 (758)
                                                      |.||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..++.
T Consensus       219 --------------------------------g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~  266 (285)
T 1wdy_A          219 --------------------------------GKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLK  266 (285)
T ss_dssp             --------------------------------SCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             --------------------------------CCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcH
Confidence                                            4555666666677777777777 6788888888888888888888888


Q ss_pred             HHHHHHHhCCCCCCCCC
Q 035705          601 SVCQLLISSGAKCDIEN  617 (758)
Q Consensus       601 ~iv~~Ll~~gad~~~~d  617 (758)
                      +++++|+++|++++.+|
T Consensus       267 ~i~~~Ll~~Ga~~~~~d  283 (285)
T 1wdy_A          267 KIAELLCKRGASTDCGD  283 (285)
T ss_dssp             HHHHHHHHHSSCSCCSS
T ss_pred             HHHHHHHHcCCCCCccc
Confidence            88888888888887776

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=4.3e-43  Score=370.68  Aligned_cols=324  Identities=20%  Similarity=0.146  Sum_probs=264.1

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHc-cCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 035705          310 LHNGRTLIHHAILCNNARAVELLLNC-AVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAM  388 (758)
Q Consensus       310 ~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~  388 (758)
                      +..+.++||.|+..|+.+.|+.|+.. +.+++.    .+..|.||||+|+..|+.+++++|+++|++++.++..|.||||
T Consensus        21 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~----~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~   96 (351)
T 3utm_A           21 GEYKKDELLEAARSGNEEKLMALLTPLNVNCHA----SDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLH   96 (351)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCC----SSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             ccccchhHHHHHHcCCHHHHHHHHHhcCCCccc----CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHH
Confidence            34678999999999999999999875 566554    7889999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHH
Q 035705          389 ICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDA  468 (758)
Q Consensus       389 ~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~  468 (758)
                      +|+..|+.+++++|+++|++++..+..|.||||+|+.    .+..+++++|++.|++++..+..|.||++.++..+..+.
T Consensus        97 ~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~  172 (351)
T 3utm_A           97 NACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAAS----KNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRER  172 (351)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHH
Confidence            9999999999999999999999999999999999964    467889999999999998888899999999888888888


Q ss_pred             HHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcC---ChhHHHHHHHhhcc
Q 035705          469 LKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNR---NGEVLEQVILEYAL  545 (758)
Q Consensus       469 v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~---~~~~v~~ll~~~~~  545 (758)
                      +++....             +++..++..+..+.++.++..+......+..|.||||+|+..+   ..+++++| .+.+.
T Consensus       173 ~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~L-l~~g~  238 (351)
T 3utm_A          173 LTYEFKG-------------HSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELL-LRKGA  238 (351)
T ss_dssp             HHHHHHH-------------HHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHH-HHTTC
T ss_pred             HHhhhcc-------------cHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHH-HHcCC
Confidence            8777664             4678888888888888888877666667788899999999884   45666644 45677


Q ss_pred             ccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHH
Q 035705          546 EEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALA  625 (758)
Q Consensus       546 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~  625 (758)
                      +++..+..|+||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|+||++
T Consensus       239 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~  318 (351)
T 3utm_A          239 NVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQ  318 (351)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhh
Confidence            88888889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHCCChhhHHHHHHHHHHHHHHhCCCccccccccCCCcchHHHH
Q 035705          626 LARENGNGNEAENVILDELALTLVLDGTYVKKHTKCGKGSPHVKLL  671 (758)
Q Consensus       626 ~A~~~~~~~~~~~ll~~~~~~~L~~~g~~~~~~d~~g~t~l~~a~~  671 (758)
                      +|.    .+         ++++|.+.+..   ....+.+++..|+.
T Consensus       319 ~a~----~~---------~~~~l~~~~~~---~~~~~~~~l~~A~~  348 (351)
T 3utm_A          319 MGN----EA---------VQQILSESTPM---RTSDVDYRLLEASK  348 (351)
T ss_dssp             HSC----HH---------HHHHHHHC--------------------
T ss_pred             hhh----HH---------HHHHHHhcccc---ccCcceeehhhhhc
Confidence            882    22         44455555432   33455566666543

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=3e-43  Score=373.46  Aligned_cols=259  Identities=21%  Similarity=0.272  Sum_probs=185.7

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHccCCCCCCcccCC-CCCCcHHHHHHHcCCHHHHHHHH--------HcCCCCCCCC
Q 035705          310 LHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYS-KTELRPIHLAARLGSAKILRRLI--------SAGCNINSRT  380 (758)
Q Consensus       310 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll--------~~g~~~~~~~  380 (758)
                      +..|.||||.|+..+ .+++++|++  .+++.    .+ ..|.||||+|+..|+.+++++|+        ++|+++|..|
T Consensus        91 ~~~g~t~L~~Aa~~~-~~~~~~L~~--~~~n~----~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d  163 (373)
T 2fo1_E           91 EPESPIKLHTEAAGS-YAITEPITR--ESVNI----IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMD  163 (373)
T ss_dssp             ---CCCHHHHHHHSS-SCCCSCCST--TTTTT----CCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCC
T ss_pred             CCCCccHHHHHhcCC-chHHHHhcc--ccccc----cCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCC
Confidence            346778888888854 467777754  23333    44 67888888888888877776665        7889999888


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHH
Q 035705          381 AAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFV  460 (758)
Q Consensus       381 ~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a  460 (758)
                      ..|.||||+|+..|+.++|++|+++|++++..+..|                                     .||||+|
T Consensus       164 ~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g-------------------------------------~t~L~~A  206 (373)
T 2fo1_E          164 CDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSE-------------------------------------RSALHQA  206 (373)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTC-------------------------------------CCHHHHH
T ss_pred             CCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCC-------------------------------------CCHHHHH
Confidence            889999999999999999999988888877665554                                     4677777


Q ss_pred             HHcCCHHHHHHHHHhcC--CCCcccCCCCCcHHHHHHHcC---CHHHHHHHHhCCCCCCc--------CCCCCCcHHHHH
Q 035705          461 TQANDVDALKKLIEWAD--VDLDEQDADGFSAAMIAAAAG---HVEAFRLLLHAGANIKL--------QNKYGETAITLA  527 (758)
Q Consensus       461 ~~~~~~~~v~~Ll~~~~--~~~~~~~~~g~t~L~~A~~~g---~~~~v~~Ll~~g~~~~~--------~~~~g~t~L~~A  527 (758)
                      +..|+.+++++|++...  .+++..+..|.||||+|+..+   +.+++++|+++|++++.        .+..|.||||+|
T Consensus       207 ~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A  286 (373)
T 2fo1_E          207 AANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYA  286 (373)
T ss_dssp             HHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHH
T ss_pred             HHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHH
Confidence            88888899999988621  688889999999999999988   89999999999999886        344566666666


Q ss_pred             HHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHH
Q 035705          528 ELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLI  607 (758)
Q Consensus       528 ~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll  607 (758)
                      +..|+.+++++|+...+.+++..|..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+
T Consensus       287 ~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll  366 (373)
T 2fo1_E          287 AQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFD  366 (373)
T ss_dssp             HSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            66666666665555555566666666666666666666666666666666666666666666666666666666666666


Q ss_pred             hCCCC
Q 035705          608 SSGAK  612 (758)
Q Consensus       608 ~~gad  612 (758)
                      ++|++
T Consensus       367 ~~~a~  371 (373)
T 2fo1_E          367 RCRPE  371 (373)
T ss_dssp             TTC--
T ss_pred             hcCcc
Confidence            66554

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=5.9e-43  Score=371.24  Aligned_cols=288  Identities=20%  Similarity=0.183  Sum_probs=234.7

Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHHc
Q 035705          315 TLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRT-AAGETAAMICARY  393 (758)
Q Consensus       315 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~  393 (758)
                      +++.-+...|+++++++++...         .+..|.||||+|+..+. +++++|+.  .+++..| ..|+||||+|+..
T Consensus        68 ~~~~~~~~~g~~~~~~~~~~~~---------~~~~g~t~L~~Aa~~~~-~~~~~L~~--~~~n~~d~~~g~t~Lh~Aa~~  135 (373)
T 2fo1_E           68 GYGNGNDFLGDFNHTNLQIPTE---------PEPESPIKLHTEAAGSY-AITEPITR--ESVNIIDPRHNRTVLHWIASN  135 (373)
T ss_dssp             -----------------------------------CCCHHHHHHHSSS-CCCSCCST--TTTTTCCCSSCCCHHHHHHCT
T ss_pred             ccCCCCCccccccccccccccC---------CCCCCccHHHHHhcCCc-hHHHHhcc--ccccccCCcCCCCHHHHHHHC
Confidence            3456677788899988887542         45789999999999554 78888765  5778788 7899999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 035705          394 KHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLI  473 (758)
Q Consensus       394 g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll  473 (758)
                      |+.+++++|+..                             .++.|++.|++++..+..|.||||+|+..|+.+++++|+
T Consensus       136 g~~~~v~~Ll~~-----------------------------~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll  186 (373)
T 2fo1_E          136 SSAEKSEDLIVH-----------------------------EAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLM  186 (373)
T ss_dssp             TCCSCCTTHHHH-----------------------------HHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             CCHHHHHHHHHH-----------------------------HHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHH
Confidence            999998888743                             345677888888888888899999999999999999999


Q ss_pred             HhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCC---CCCCcCCCCCCcHHHHHHHcC---ChhHHHHHHHhhcccc
Q 035705          474 EWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAG---ANIKLQNKYGETAITLAELNR---NGEVLEQVILEYALEE  547 (758)
Q Consensus       474 ~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g---~~~~~~~~~g~t~L~~A~~~~---~~~~v~~ll~~~~~~~  547 (758)
                      +. |++++.++..|.||||+|+..|+.+++++|+++|   ++++..+..|.||||+|+..+   +.+++++|+.. +.++
T Consensus       187 ~~-ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~-g~~~  264 (373)
T 2fo1_E          187 KA-GADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEK-GAKV  264 (373)
T ss_dssp             HT-TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHH-TCCS
T ss_pred             HC-CCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHC-CCCc
Confidence            98 8999999999999999999999999999999998   899999999999999999998   88899877765 5555


Q ss_pred             CC--------CCCCCchHHHHHHHcCCHHHHHHHHhcC-CCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCC
Q 035705          548 GQ--------KGSAGFYALHRAAKRGDFDLVHTLVSRC-YDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENA  618 (758)
Q Consensus       548 ~~--------~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~  618 (758)
                      +.        .+..|.||||+|+..|+.++|++|++++ +++|.+|..|+||||+|+..|+.++|++|+++|++++.+|.
T Consensus       265 ~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~  344 (373)
T 2fo1_E          265 DYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDA  344 (373)
T ss_dssp             SCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCS
T ss_pred             ccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCC
Confidence            54        6779999999999999999999999886 99999999999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCc
Q 035705          619 RNETALALARENGNGNEAENVILDELALTLVLDGTY  654 (758)
Q Consensus       619 ~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~  654 (758)
                      .|+||||+|+.+|+.+         ++++|+++|++
T Consensus       345 ~g~t~l~~A~~~g~~~---------iv~~Ll~~~a~  371 (373)
T 2fo1_E          345 TDHTARQLAQANNHHN---------IVDIFDRCRPE  371 (373)
T ss_dssp             SSCCHHHHHHHTTCHH---------HHHHHHTTC--
T ss_pred             CCCCHHHHHHHcCCHH---------HHHHHHhcCcc
Confidence            9999999999999997         56677777765

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=4e-41  Score=343.11  Aligned_cols=263  Identities=22%  Similarity=0.235  Sum_probs=171.7

Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHHccCC-------CCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Q 035705          309 ILHNGRTLIHHAILCNNARAVELLLNCAVD-------KEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTA  381 (758)
Q Consensus       309 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-------~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~  381 (758)
                      ....|.|+||+|+..|+.+.+..++..+..       ....+...+..|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus        11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~   90 (285)
T 3d9h_A           11 SSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITA   90 (285)
T ss_dssp             -------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECT
T ss_pred             cchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence            356789999999999998877777665432       1223455788999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHH
Q 035705          382 AGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVT  461 (758)
Q Consensus       382 ~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~  461 (758)
                      .|.||||+|+..|+.+++++|+++|++++..+..|.                                     ||||+|+
T Consensus        91 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~-------------------------------------t~L~~A~  133 (285)
T 3d9h_A           91 DHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWH-------------------------------------TPLFNAC  133 (285)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCC-------------------------------------CHHHHHH
T ss_pred             CCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCC-------------------------------------CHHHHHH
Confidence            999999999999999999999999888776655554                                     6777778


Q ss_pred             HcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHH
Q 035705          462 QANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVIL  541 (758)
Q Consensus       462 ~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~  541 (758)
                      ..|+.+++++|++. +++++..+ .|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+.
T Consensus       134 ~~~~~~~v~~Ll~~-g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~  211 (285)
T 3d9h_A          134 VSGSWDCVNLLLQH-GASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE  211 (285)
T ss_dssp             HHTCHHHHHHHHHT-TCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHH
T ss_pred             HcCHHHHHHHHHHC-CCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            88888888888887 67777544 48888888888888888888888888888777777777666666666666665543


Q ss_pred             hhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhC-CCCCC
Q 035705          542 EYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISS-GAKCD  614 (758)
Q Consensus       542 ~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~-gad~~  614 (758)
                      . +.+++. +..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+  ++.+++++|+++ |+++.
T Consensus       212 ~-ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~  281 (285)
T 3d9h_A          212 S-GADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVP--PESPLAQLFLEREGASLP  281 (285)
T ss_dssp             T-TCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC-----
T ss_pred             C-CCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCCC
Confidence            3 444442 555666666666666666666666666666666666666666666  345666666665 55543

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.4e-40  Score=337.34  Aligned_cols=259  Identities=21%  Similarity=0.206  Sum_probs=205.1

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcC-----------CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccC
Q 035705          347 SKTELRPIHLAARLGSAKILRRLISAG-----------CNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYA  415 (758)
Q Consensus       347 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g-----------~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~  415 (758)
                      ...|.|+||+|+..|+.+.+..++..+           ..++..|..|+||||+|+..|+.+++++|++.|++++.++..
T Consensus        12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~   91 (285)
T 3d9h_A           12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITAD   91 (285)
T ss_dssp             ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTT
T ss_pred             chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC
Confidence            467899999999999977777766542           235667889999999999999999999999999888776655


Q ss_pred             CCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHH
Q 035705          416 GQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAA  495 (758)
Q Consensus       416 g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~  495 (758)
                      |                                     .||||+|+..|+.+++++|++. |++++.++..|.||||+|+
T Consensus        92 g-------------------------------------~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~t~L~~A~  133 (285)
T 3d9h_A           92 H-------------------------------------VSPLHEACLGGHLSCVKILLKH-GAQVNGVTADWHTPLFNAC  133 (285)
T ss_dssp             C-------------------------------------CCHHHHHHHTTCHHHHHHHHHT-TCCSSCCCTTCCCHHHHHH
T ss_pred             C-------------------------------------CCHHHHHHHCCcHHHHHHHHHC-CCCCCCCCCCCCCHHHHHH
Confidence            5                                     4688888999999999999998 8999999999999999999


Q ss_pred             HcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHh
Q 035705          496 AAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVS  575 (758)
Q Consensus       496 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  575 (758)
                      ..|+.+++++|+++|++++..+ .|.||||+|+..|+.+++++|+. .+.+++..|..|.||||+|+..|+.+++++|++
T Consensus       134 ~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~  211 (285)
T 3d9h_A          134 VSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIA-YGGNIDHKISHLGTPLYLACENQQRACVKKLLE  211 (285)
T ss_dssp             HHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHH-TTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHH
T ss_pred             HcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            9999999999999999998655 49999999999999999997774 567889999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhC-CCc
Q 035705          576 RCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLD-GTY  654 (758)
Q Consensus       576 ~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~-g~~  654 (758)
                      +|++++. |..|+||||+|+..++.+++++|+++|+|++.+|..|+||||+|+.  +.+         ++++|+++ |++
T Consensus       212 ~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~--~~~---------~~~~Ll~~~~a~  279 (285)
T 3d9h_A          212 SGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPP--ESP---------LAQLFLEREGAS  279 (285)
T ss_dssp             TTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCT--TSH---------HHHHHHHHC---
T ss_pred             CCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhcC--ccH---------HHHHHHHhhccC
Confidence            9999995 8999999999999999999999999999999999999999999994  344         55566666 666


Q ss_pred             ccc
Q 035705          655 VKK  657 (758)
Q Consensus       655 ~~~  657 (758)
                      +..
T Consensus       280 l~~  282 (285)
T 3d9h_A          280 LPK  282 (285)
T ss_dssp             ---
T ss_pred             CCC
Confidence            544

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=9.3e-41  Score=354.24  Aligned_cols=272  Identities=18%  Similarity=0.164  Sum_probs=199.6

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 035705          310 LHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMI  389 (758)
Q Consensus       310 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~  389 (758)
                      +..|.||||+|+..|+.++|++|++.|++++.    .+..|.||||+|+..|+.+++++|+++|++++.  ..|.||||+
T Consensus        17 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~----~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~~   90 (364)
T 3ljn_A           17 DDENMEKIHVAARKGQTDEVRRLIETGVSPTI----QNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIHL   90 (364)
T ss_dssp             CHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTC----CCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc----cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHHH
Confidence            55667777777777777777777777766654    566677777777777777777777777765443  356777777


Q ss_pred             HHHcCCHHHHHHHHHC----CCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCC
Q 035705          390 CARYKHEECLKFLASE----GADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQAND  465 (758)
Q Consensus       390 A~~~g~~~iv~~Ll~~----g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~  465 (758)
                      |+..|+.+++++|++.    |++++.                           ++.......                  
T Consensus        91 A~~~g~~~~v~~Ll~~~~~~~~~~~~---------------------------~~~~~~~~~------------------  125 (364)
T 3ljn_A           91 AVMANKTDLVVALVEGAKERGQMPES---------------------------LLNECDERE------------------  125 (364)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTCCHHH---------------------------HHTCCCCCC------------------
T ss_pred             HHHcCCHHHHHHHHHhccccCCCHHH---------------------------HHhhcchHh------------------
Confidence            7777777777777766    333211                           000000000                  


Q ss_pred             HHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcC--CHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhh
Q 035705          466 VDALKKLIEWADVDLDEQDADGFSAAMIAAAAG--HVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEY  543 (758)
Q Consensus       466 ~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~  543 (758)
                               ....+++..+..|.||||+|+..|  +.++|++|+++|++++..|..|.||||+|+..|+.+++++|+...
T Consensus       126 ---------~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g  196 (364)
T 3ljn_A          126 ---------VNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTV  196 (364)
T ss_dssp             ---------EEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHC
T ss_pred             ---------hhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence                     001233446777888888888888  788888888888888888888888888888888888887666543


Q ss_pred             c----cccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCC----
Q 035705          544 A----LEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDI----  615 (758)
Q Consensus       544 ~----~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~----  615 (758)
                      .    .+++..|..|+||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.    
T Consensus       197 ~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~  276 (364)
T 3ljn_A          197 PSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACP  276 (364)
T ss_dssp             SCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCT
T ss_pred             cccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCc
Confidence            2    22778888999999999999999999999999999999999999999999999999999999999887533    


Q ss_pred             --------CCCCCCcHHHHHHHCCChhhHHHHHH
Q 035705          616 --------ENARNETALALARENGNGNEAENVIL  641 (758)
Q Consensus       616 --------~d~~g~t~L~~A~~~~~~~~~~~ll~  641 (758)
                              .+..|+|||+.|+..++.+.+..|+.
T Consensus       277 ~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~  310 (364)
T 3ljn_A          277 YHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQ  310 (364)
T ss_dssp             TBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHH
T ss_pred             ccCcccccccccccccchhhhhccCHHHHHHHHH
Confidence                    56778999999999988875554443

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.7e-40  Score=352.13  Aligned_cols=266  Identities=18%  Similarity=0.224  Sum_probs=216.6

Q ss_pred             CCCCCchHHHHHHhcCCHHHHHHHHhCCCCCCcchhhhhhccccccccCCCCchhHHHHhcCCHHHHHHHHHcCCCCccc
Q 035705          176 RPQVSVHALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIK  255 (758)
Q Consensus       176 ~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~d~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~  255 (758)
                      .+..|.||||+|+..|+.++|++|+++|++++..+             ..|.||||+|+..|+.++|++|+++|++++. 
T Consensus        16 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d-------------~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-   81 (364)
T 3ljn_A           16 SDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQN-------------RFGCTALHLACKFGCVDTAKYLASVGEVHSL-   81 (364)
T ss_dssp             CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCC-------------TTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC-
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccC-------------CCCCcHHHHHHHcCCHHHHHHHHHCCCCccc-
Confidence            45668999999999999999999999999999988             4699999999999999999999999996653 


Q ss_pred             cccCccccccccchhhhhhccccccccccchhhhhhhchHHHHHHHhhccCCCCCCCCchHHHHHHHcCCHHHHHHHHHc
Q 035705          256 VRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCNNARAVELLLNC  335 (758)
Q Consensus       256 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  335 (758)
                                                                             ..|.||||+|+..|+.+++++|++.
T Consensus        82 -------------------------------------------------------~~g~t~L~~A~~~g~~~~v~~Ll~~  106 (364)
T 3ljn_A           82 -------------------------------------------------------WHGQKPIHLAVMANKTDLVVALVEG  106 (364)
T ss_dssp             -------------------------------------------------------BTTBCHHHHHHHTTCHHHHHHHHHH
T ss_pred             -------------------------------------------------------cCCCCHHHHHHHcCCHHHHHHHHHh
Confidence                                                                   3688999999999999999999998


Q ss_pred             ----cCCCCC-------------CcccCCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCH
Q 035705          336 ----AVDKEF-------------PVQTYSKTELRPIHLAARLG--SAKILRRLISAGCNINSRTAAGETAAMICARYKHE  396 (758)
Q Consensus       336 ----g~~~~~-------------~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~  396 (758)
                          |++++.             ..+..+..|.||||+|+..|  +.+++++|+++|++++..|..|.||||+|+..|+.
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~  186 (364)
T 3ljn_A          107 AKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNR  186 (364)
T ss_dssp             HHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             ccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCH
Confidence                555432             11125678999999999999  99999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhc
Q 035705          397 ECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWA  476 (758)
Q Consensus       397 ~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~  476 (758)
                      +++++|+++|++..                                +.+++..+..|.||||+|+..|+.+++++|+++ 
T Consensus       187 ~~v~~Ll~~g~~~~--------------------------------~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-  233 (364)
T 3ljn_A          187 EALDLMMDTVPSKS--------------------------------SLRLDYANKQGNSHLHWAILINWEDVAMRFVEM-  233 (364)
T ss_dssp             HHHHHHHHHCSCSS--------------------------------SCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTT-
T ss_pred             HHHHHHHhcccccc--------------------------------cccccccCCCCCcHHHHHHHcCCHHHHHHHHHc-
Confidence            99999999988721                                112334455566788888888899999999987 


Q ss_pred             CCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCc------------CCCCCCcHHHHHHHcCChhHHHHHHHhh
Q 035705          477 DVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKL------------QNKYGETAITLAELNRNGEVLEQVILEY  543 (758)
Q Consensus       477 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~------------~~~~g~t~L~~A~~~~~~~~v~~ll~~~  543 (758)
                      |++++.+|..|.||||+|+..|+.+++++|+++|++++.            .+..++||+++|+..|+.+.+..|+.+.
T Consensus       234 gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~~  312 (364)
T 3ljn_A          234 GIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEK  312 (364)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHHH
Confidence            889999999999999999999999999999988876533            2334444555555444444444444433

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=3.8e-39  Score=322.86  Aligned_cols=206  Identities=22%  Similarity=0.256  Sum_probs=178.2

Q ss_pred             HHHHHHHHHcCCCccc-CCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q 035705          433 QQAVVDSIRSGNIIQS-SNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGA  511 (758)
Q Consensus       433 ~~~~~~ll~~g~~~~~-~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~  511 (758)
                      .+++++|++.|.+++. .+..|.||||+|+..|+.+++++|++. |++++.++..|.||||+|+..|+.+++++|+++|+
T Consensus        36 ~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~  114 (253)
T 1yyh_A           36 PAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA-SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA  114 (253)
T ss_dssp             ----------------CCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTT
T ss_pred             hHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            3334444444444322 356677899999999999999999998 89999999999999999999999999999999987


Q ss_pred             -CCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcH
Q 035705          512 -NIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTP  590 (758)
Q Consensus       512 -~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tp  590 (758)
                       +++..+..|.||||+|+..|+.+++++|+. .+.+++..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||
T Consensus       115 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tp  193 (253)
T 1yyh_A          115 TDLDARMHDGTTPLILAARLAVEGMLEDLIN-SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP  193 (253)
T ss_dssp             SCTTCCCTTCCCHHHHHHHHTCSSHHHHHHH-TTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CCccccCCCCCcHHHHHHHcChHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence             899999999999999999999999997776 678889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHH
Q 035705          591 LMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVI  640 (758)
Q Consensus       591 L~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll  640 (758)
                      ||+|+..|+.+++++|+++|++++.+|..|+||||+|+++|+.+++++|.
T Consensus       194 L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~  243 (253)
T 1yyh_A          194 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD  243 (253)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999998666443

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=2.6e-39  Score=330.41  Aligned_cols=262  Identities=18%  Similarity=0.147  Sum_probs=173.7

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHH
Q 035705          344 QTYSKTELRPIHLAARLGSAKILRRLISAGCN---INSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCAN  420 (758)
Q Consensus       344 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l  420 (758)
                      +..+..|.||||+|+..|+.+++++|+++|++   ++.++..|.||||+|+..|+.+++++|+++|++++..+..|    
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g----   78 (282)
T 1oy3_D            3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGG----   78 (282)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTS----
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC----
Confidence            34667777777777777777777777777776   66777777777777777777777777777777665544333    


Q ss_pred             HHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCH
Q 035705          421 SIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHV  500 (758)
Q Consensus       421 ~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~  500 (758)
                                                       .||||+|+..|+.+++++|++. +.+.+......             
T Consensus        79 ---------------------------------~tpL~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~-------------  111 (282)
T 1oy3_D           79 ---------------------------------HTALHLACRVRAHTCACVLLQP-RPSHPRDASDT-------------  111 (282)
T ss_dssp             ---------------------------------CCHHHHHTTTTCHHHHHHHSSS-CCSSCCCC----------------
T ss_pred             ---------------------------------CCHHHHHHHcCCcchhHhhhcc-CCCCchhhHHH-------------
Confidence                                             3566666677777777777765 34332211110             


Q ss_pred             HHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCC
Q 035705          501 EAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDV  580 (758)
Q Consensus       501 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~  580 (758)
                           ++..+  .......+.++++.++..+....+..++...+.+++..+..|.||||+|+..|+.+++++|+++|+++
T Consensus       112 -----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~  184 (282)
T 1oy3_D          112 -----YLTQS--QDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL  184 (282)
T ss_dssp             ---------------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT
T ss_pred             -----Hhhcc--cccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence                 00000  11123446677777777776666666777778889999999999999999999999999999999999


Q ss_pred             CCCCCC-CCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCcccccc
Q 035705          581 NASDAD-GYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHT  659 (758)
Q Consensus       581 n~~d~~-g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~~~~~d  659 (758)
                      +.++.. |+||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+..++.+         ++++|+++|++++.+|
T Consensus       185 ~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~---------~v~~Ll~~ga~~~~~~  255 (282)
T 1oy3_D          185 NKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPI---------LARLLRAHGAPEPEDG  255 (282)
T ss_dssp             TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHH---------HHHHHHHTTCCCCCCC
T ss_pred             CCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcH---------HHHHHHHcCCCcCcCC
Confidence            999864 999999999999999999999999999999999999999999999986         6778899999999999


Q ss_pred             ccCCCcchHHHHH
Q 035705          660 KCGKGSPHVKLLK  672 (758)
Q Consensus       660 ~~g~t~l~~a~~~  672 (758)
                      ..|+||+++|...
T Consensus       256 ~~g~tpl~~a~~~  268 (282)
T 1oy3_D          256 GDKLSPCSSSGSD  268 (282)
T ss_dssp             -------------
T ss_pred             CcccccccccCCc
Confidence            9999999998654

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=3e-39  Score=329.94  Aligned_cols=267  Identities=20%  Similarity=0.253  Sum_probs=187.0

Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 035705          309 ILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAM  388 (758)
Q Consensus       309 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~  388 (758)
                      .+..|.||||+|+..|+.++|++|++.|++++. ++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||
T Consensus         5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~   83 (282)
T 1oy3_D            5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEY-LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALH   83 (282)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGG-GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccc-ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence            578899999999999999999999999988432 3447889999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHH
Q 035705          389 ICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDA  468 (758)
Q Consensus       389 ~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~  468 (758)
                      +|+..|+.+++++|+++|++...........                      .+  .......+.++++.++..+....
T Consensus        84 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~----------------------~~--~~~~~~~~~~~~~~~~~~~~~~~  139 (282)
T 1oy3_D           84 LACRVRAHTCACVLLQPRPSHPRDASDTYLT----------------------QS--QDCTPDTSHAPAAVDSQPNPENE  139 (282)
T ss_dssp             HHTTTTCHHHHHHHSSSCCSSCCCC-------------------------------------------------------
T ss_pred             HHHHcCCcchhHhhhccCCCCchhhHHHHhh----------------------cc--cccCcchhcchhhhccccccchh
Confidence            9999999999999999998765332111000                      00  01111233455555555544444


Q ss_pred             HHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccC
Q 035705          469 LKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEG  548 (758)
Q Consensus       469 v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~  548 (758)
                      +..++...+.+++.++..|.||||+|+..|+.+++++|+++|++++..+.                              
T Consensus       140 ~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~------------------------------  189 (282)
T 1oy3_D          140 EEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEP------------------------------  189 (282)
T ss_dssp             ----CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT------------------------------
T ss_pred             hhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC------------------------------
Confidence            44343334566677777777777777777777777777777776665542                              


Q ss_pred             CCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q 035705          549 QKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALAR  628 (758)
Q Consensus       549 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~  628 (758)
                         ..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|++++.+|..|.|||++|.
T Consensus       190 ---~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~  266 (282)
T 1oy3_D          190 ---TCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSG  266 (282)
T ss_dssp             ---TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC-----------
T ss_pred             ---CCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccC
Confidence               23777888888899999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HCCCh
Q 035705          629 ENGNG  633 (758)
Q Consensus       629 ~~~~~  633 (758)
                      .....
T Consensus       267 ~~~~~  271 (282)
T 1oy3_D          267 SDSDS  271 (282)
T ss_dssp             -----
T ss_pred             Ccccc
Confidence            77654

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=5.4e-38  Score=311.59  Aligned_cols=225  Identities=26%  Similarity=0.376  Sum_probs=189.4

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHH
Q 035705          343 VQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSI  422 (758)
Q Consensus       343 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~  422 (758)
                      ++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|      
T Consensus         4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g------   77 (237)
T 3b7b_A            4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEG------   77 (237)
T ss_dssp             CCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTS------
T ss_pred             cccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCC------
Confidence            34477888899999999999999999999888888888888899999998888888888888887766554444      


Q ss_pred             HHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHH
Q 035705          423 AKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEA  502 (758)
Q Consensus       423 a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~  502 (758)
                                                     .||||+|+..|+.+++++|++..+.+++..+..|.||||+|+..++.++
T Consensus        78 -------------------------------~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  126 (237)
T 3b7b_A           78 -------------------------------STCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDL  126 (237)
T ss_dssp             -------------------------------CCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             -------------------------------CcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHH
Confidence                                           4677777788888888888887447888888888888888888888888


Q ss_pred             HHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCC
Q 035705          503 FRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNA  582 (758)
Q Consensus       503 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~  582 (758)
                      +++|+++|++++.++.                                  .|.||||+|+..|+.+++++|+++|++++.
T Consensus       127 ~~~Ll~~g~~~~~~~~----------------------------------~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~  172 (237)
T 3b7b_A          127 VKLLLSKGSDINIRDN----------------------------------EENICLHWAAFSGCVDIAEILLAAKCDLHA  172 (237)
T ss_dssp             HHHHHHTTCCTTCCCT----------------------------------TSCCHHHHHHHHCCHHHHHHHHTTTCCTTC
T ss_pred             HHHHHHCCCCCCccCC----------------------------------CCCCHHHHHHHCCCHHHHHHHHHcCCCCCC
Confidence            8888888887766554                                  455667777788888999999999999999


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHH
Q 035705          583 SDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAEN  638 (758)
Q Consensus       583 ~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~  638 (758)
                      +|..|+||||+|+..++.+++++|+++|+|++.+|..|+||||+|+.+++.+.+..
T Consensus       173 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~  228 (237)
T 3b7b_A          173 VNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQ  228 (237)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHH
T ss_pred             cCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998865553

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.2e-38  Score=319.33  Aligned_cols=229  Identities=20%  Similarity=0.296  Sum_probs=156.9

Q ss_pred             CCCCCCcHHHHHHHcC-------------CHHHHHHHHHcCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC
Q 035705          346 YSKTELRPIHLAARLG-------------SAKILRRLISAGCNINS-RTAAGETAAMICARYKHEECLKFLASEGADLGL  411 (758)
Q Consensus       346 ~~~~g~t~L~~A~~~g-------------~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~  411 (758)
                      +|..|.||||+|+..|             +.+++++|+++|++++. .|..|.||||+|+..|+.+++++|+++|++++.
T Consensus         6 ~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~   85 (253)
T 1yyh_A            6 RGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANI   85 (253)
T ss_dssp             ----------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             CCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            5566666666666655             77788888888777754 467788888888888888888888877777666


Q ss_pred             cccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHH
Q 035705          412 INYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAA  491 (758)
Q Consensus       412 ~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L  491 (758)
                      .+..|.                                     ||||+|+..|+.+++++|++....+++..+..|.|||
T Consensus        86 ~~~~g~-------------------------------------t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L  128 (253)
T 1yyh_A           86 QDNMGR-------------------------------------TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL  128 (253)
T ss_dssp             CCTTSC-------------------------------------CHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHH
T ss_pred             CCCCCC-------------------------------------CHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHH
Confidence            554443                                     5666667777777777777774447777777888888


Q ss_pred             HHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHH
Q 035705          492 MIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVH  571 (758)
Q Consensus       492 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~  571 (758)
                      |+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+. .+.+++..|..|.||||+|+..|+.++++
T Consensus       129 ~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpL~~A~~~~~~~~v~  207 (253)
T 1yyh_A          129 ILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAK  207 (253)
T ss_dssp             HHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHCCCHHHHH
Confidence            88888888888888888888888888888888888888888888876654 46777778888899999999999999999


Q ss_pred             HHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCC
Q 035705          572 TLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAK  612 (758)
Q Consensus       572 ~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad  612 (758)
                      +|+++|++++.+|..|+||||+|+..|+.+++++|.+....
T Consensus       208 ~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~~  248 (253)
T 1yyh_A          208 VLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHH  248 (253)
T ss_dssp             HHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC----
T ss_pred             HHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999986543

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=8.1e-38  Score=310.32  Aligned_cols=218  Identities=22%  Similarity=0.286  Sum_probs=209.3

Q ss_pred             CCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcH
Q 035705          444 NIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETA  523 (758)
Q Consensus       444 ~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~  523 (758)
                      .+++..+..|.||||+|+..|+.+++++|++. |++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||
T Consensus         2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~   80 (237)
T 3b7b_A            2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQA-GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTC   80 (237)
T ss_dssp             CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCH
T ss_pred             CCcccccCCCCCHHHHHHHcCcHHHHHHHHHc-CCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcH
Confidence            35677888999999999999999999999998 89999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHH
Q 035705          524 ITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVC  603 (758)
Q Consensus       524 L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv  603 (758)
                      ||+|+..|+.+++++|+.....+++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++
T Consensus        81 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~  160 (237)
T 3b7b_A           81 LHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIA  160 (237)
T ss_dssp             HHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHH
Confidence            99999999999999999888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCccccccccCCCcchHHHH
Q 035705          604 QLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHTKCGKGSPHVKLL  671 (758)
Q Consensus       604 ~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~~~~~d~~g~t~l~~a~~  671 (758)
                      ++|+++|++++.+|..|+||||+|+..++.+         ++++|+++|++++.+|..|+||||+|+.
T Consensus       161 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~---------~v~~Ll~~gad~~~~d~~g~t~l~~A~~  219 (237)
T 3b7b_A          161 EILLAAKCDLHAVNIHGDSPLHIAARENRYD---------CVVLFLSRDSDVTLKNKEGETPLQCASL  219 (237)
T ss_dssp             HHHHTTTCCTTCCCTTCCCHHHHHHHTTCHH---------HHHHHHTTTCCTTCCCTTSCCHHHHSCT
T ss_pred             HHHHHcCCCCCCcCCCCCCHHHHHHHhCCHh---------HHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence            9999999999999999999999999999986         6678999999999999999999999855

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=4.1e-38  Score=313.36  Aligned_cols=224  Identities=22%  Similarity=0.330  Sum_probs=151.2

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHH----cCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHH
Q 035705          345 TYSKTELRPIHLAARLGSAKILRRLIS----AGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCAN  420 (758)
Q Consensus       345 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l  420 (758)
                      ..|..|.||||+|+..|+.+++++|++    .|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|    
T Consensus         4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g----   79 (241)
T 1k1a_A            4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHG----   79 (241)
T ss_dssp             ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS----
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCC----
Confidence            356778888888888888888887776    677888888888888888888888888888888777766554444    


Q ss_pred             HHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCC----CCcccCCCCCcHHHHHHH
Q 035705          421 SIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADV----DLDEQDADGFSAAMIAAA  496 (758)
Q Consensus       421 ~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~----~~~~~~~~g~t~L~~A~~  496 (758)
                                                       .||||+|+..++.+++++|++. +.    +++..+..|.||||+|+.
T Consensus        80 ---------------------------------~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~g~t~L~~A~~  125 (241)
T 1k1a_A           80 ---------------------------------QTAAHLACEHRSPTCLRALLDS-AAPGTLDLEARNYDGLTALHVAVN  125 (241)
T ss_dssp             ---------------------------------CCHHHHHHHTTCHHHHHHHHHH-SCTTSCCTTCCCTTSCCHHHHHHH
T ss_pred             ---------------------------------CCHHHHHHHcCCHHHHHHHHHc-CCCccccccccCcCCCcHHHHHHH
Confidence                                             3566666777777777777776 33    777778888888888888


Q ss_pred             cCCHHHHHHHHhCCCCCCcCC-CCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHh
Q 035705          497 AGHVEAFRLLLHAGANIKLQN-KYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVS  575 (758)
Q Consensus       497 ~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  575 (758)
                      .|+.+++++|+++|++++..+ ..|.|                                  |||+|+..|+.+++++|++
T Consensus       126 ~~~~~~~~~Ll~~g~~~~~~~~~~g~t----------------------------------~L~~A~~~~~~~~v~~Ll~  171 (241)
T 1k1a_A          126 TECQETVQLLLERGADIDAVDIKSGRS----------------------------------PLIHAVENNSLSMVQLLLQ  171 (241)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTTCCC----------------------------------HHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCcccccccCCCc----------------------------------HHHHHHHcCCHHHHHHHHH
Confidence            888888888888888877665 44444                                  4455555555555555555


Q ss_pred             cCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHH
Q 035705          576 RCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVI  640 (758)
Q Consensus       576 ~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll  640 (758)
                      +|++++.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+..|+.++++.|+
T Consensus       172 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~  236 (241)
T 1k1a_A          172 HGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKA  236 (241)
T ss_dssp             TTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC--
T ss_pred             cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhc
Confidence            55555555555555555555555555555555555555555555555655555555555555443

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=8.5e-39  Score=321.66  Aligned_cols=224  Identities=22%  Similarity=0.239  Sum_probs=168.5

Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHH
Q 035705          378 SRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPL  457 (758)
Q Consensus       378 ~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L  457 (758)
                      .+|..+.+||+.|+..|+.++|++|++.|++.....                             ...++..+..+.|||
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~-----------------------------~~~~~~~~~~~~t~L   56 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDA-----------------------------EDTVSAADPEFCHPL   56 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC---------------------------------------------------
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccc-----------------------------cccccccCccCCCHH
Confidence            355566778888888888888888888776532110                             111334456677888


Q ss_pred             HHHHHcCCHH-HHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHH
Q 035705          458 MFVTQANDVD-ALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVL  536 (758)
Q Consensus       458 ~~a~~~~~~~-~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v  536 (758)
                      +.|+..+..+ +++.|++. |+++|.+|.+|.||||+|+..|+.++|++|++.|++++..+..|.||+++|+..++.+++
T Consensus        57 ~~a~~~~~~~~~v~~Ll~~-Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~  135 (269)
T 4b93_B           57 CQCPKCAPAQKRLAKVPAS-GLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVV  135 (269)
T ss_dssp             ------------------C-CCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHH
Confidence            8888877654 77888887 899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCC
Q 035705          537 EQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIE  616 (758)
Q Consensus       537 ~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~  616 (758)
                      +.|+ +.+.+++..|..|+||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.++|++|+++|+|++.+
T Consensus       136 ~~Ll-~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~  214 (269)
T 4b93_B          136 KCLL-DSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVL  214 (269)
T ss_dssp             HHHH-HTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCC
T ss_pred             HHHH-HCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCc
Confidence            8666 457888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcHHHHHHHCCC
Q 035705          617 NARNETALALARENGN  632 (758)
Q Consensus       617 d~~g~t~L~~A~~~~~  632 (758)
                      |..|+||||+|++++.
T Consensus       215 d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          215 NKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             CTTSCCSGGGSCTTCH
T ss_pred             CCCCCCHHHHHHhCCc
Confidence            9999999999987764

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=3.2e-38  Score=325.22  Aligned_cols=265  Identities=23%  Similarity=0.290  Sum_probs=215.9

Q ss_pred             HHHHcCCHHHHHHHHHccCCCCCCccc-----CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 035705          319 HAILCNNARAVELLLNCAVDKEFPVQT-----YSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARY  393 (758)
Q Consensus       319 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~-----~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  393 (758)
                      .++..++.+.++.++....++......     .+..+.||||.|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   83 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACID   83 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence            466777778788787766554432211     233567899999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 035705          394 KHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLI  473 (758)
Q Consensus       394 g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll  473 (758)
                      |+.+++++|+++|++++..+..|.                                     ||||+|+..|+.+++++|+
T Consensus        84 g~~~~v~~Ll~~ga~~~~~~~~g~-------------------------------------tpL~~A~~~g~~~~v~~Ll  126 (299)
T 1s70_B           84 DNVDMVKFLVENGANINQPDNEGW-------------------------------------IPLHAAASCGYLDIAEYLI  126 (299)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSC-------------------------------------CHHHHHHHHTCHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCC-------------------------------------cHHHHHHHcCCHHHHHHHH
Confidence            999999999998888776655554                                     6777777888888888888


Q ss_pred             HhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHh-CCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCC
Q 035705          474 EWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLH-AGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGS  552 (758)
Q Consensus       474 ~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~  552 (758)
                      ++ |++++..+..|.||||+|+..++.++++.++. .|.+++..+..+.++++.        .+..++..........+.
T Consensus       127 ~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~  197 (299)
T 1s70_B          127 SQ-GAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLR--------DARQWLNSGHINDVRHAK  197 (299)
T ss_dssp             HT-TCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--------HHHHHHHHTCCCCCCCTT
T ss_pred             hC-CCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHH--------HHHHHHhccCcchhhhcC
Confidence            87 78888888888888888888888888887774 466665544444444332        344566666666667788


Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHH
Q 035705          553 AGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARE  629 (758)
Q Consensus       553 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~  629 (758)
                      .|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|+||||+|++
T Consensus       198 ~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~  274 (299)
T 1s70_B          198 SGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE  274 (299)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS
T ss_pred             CCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999965

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=4.3e-37  Score=305.99  Aligned_cols=218  Identities=24%  Similarity=0.263  Sum_probs=202.7

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHH---hcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcH
Q 035705          447 QSSNASRFSPLMFVTQANDVDALKKLIE---WADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETA  523 (758)
Q Consensus       447 ~~~~~~~~t~L~~a~~~~~~~~v~~Ll~---~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~  523 (758)
                      +.+|..|.||||+|+..|+.+++++|++   ..+.+++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~   82 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA   82 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence            4678889999999999999999999998   2589999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChhHHHHHHHhhc---cccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCC-CCCCcHHHHHHHcCc
Q 035705          524 ITLAELNRNGEVLEQVILEYA---LEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASD-ADGYTPLMLAAKSGH  599 (758)
Q Consensus       524 L~~A~~~~~~~~v~~ll~~~~---~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d-~~g~tpL~~A~~~~~  599 (758)
                      ||+|+..|+.+++++|+....   .+++..+..|.||||+|+..|+.+++++|+++|++++..+ ..|+||||+|+..|+
T Consensus        83 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~  162 (241)
T 1k1a_A           83 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNS  162 (241)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCC
Confidence            999999999999999887765   3778889999999999999999999999999999999999 899999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCccccccccCCCcchHHHHHH
Q 035705          600 GSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHTKCGKGSPHVKLLKM  673 (758)
Q Consensus       600 ~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~~~~~d~~g~t~l~~a~~~~  673 (758)
                      .+++++|+++|++++.+|..|+||||+|+..|+.+         ++++|+++|++++.+|..|+||+++|+...
T Consensus       163 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~---------~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~  227 (241)
T 1k1a_A          163 LSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLP---------LVRTLVRSGADSSLKNCHNDTPLMVARSRR  227 (241)
T ss_dssp             HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHH---------HHHHHHHTTCCTTCCCTTSCCTTTTCSSHH
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHH---------HHHHHHhcCCCCCCcCCCCCCHHHHHHhcC
Confidence            99999999999999999999999999999999986         667888999999999999999999986543

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=4.9e-37  Score=303.35  Aligned_cols=155  Identities=21%  Similarity=0.257  Sum_probs=85.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhH
Q 035705          456 PLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEV  535 (758)
Q Consensus       456 ~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~  535 (758)
                      |||+|+..|+.+++++|+++ |++++.++..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..|+.++
T Consensus        76 ~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~  154 (231)
T 3aji_A           76 PLHIAASAGXDEIVKALLVK-GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKM  154 (231)
T ss_dssp             HHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHcCHHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHH
Confidence            34444444444444444444 44445555555555555555555555555555555555544444444444444333333


Q ss_pred             HHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCC
Q 035705          536 LEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAK  612 (758)
Q Consensus       536 v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad  612 (758)
                      +++|+. .+.+++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|++
T Consensus       155 v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~  230 (231)
T 3aji_A          155 VHILLF-YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEAS  230 (231)
T ss_dssp             HHHHHH-TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHh-cCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence            332222 2333333444555556666666666777777777777777777777777777766677777777766654

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=8.1e-37  Score=301.81  Aligned_cols=227  Identities=24%  Similarity=0.273  Sum_probs=205.9

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHH
Q 035705          381 AAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFV  460 (758)
Q Consensus       381 ~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a  460 (758)
                      ..+.|||+.|+..|+.+++++|++.+...                                    ++..+..|.||||+|
T Consensus         4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~------------------------------------~~~~~~~g~t~L~~A   47 (231)
T 3aji_A            4 CVSNIMICNLAYSGKLDELKERILADKSL------------------------------------ATRTDQDSRTALHWA   47 (231)
T ss_dssp             CCSSSHHHHHHHHTCHHHHHHHHHHCGGG------------------------------------GGCCCTTSCCHHHHH
T ss_pred             ccccchHHHHHHhCCHHHHHHHHHhchhh------------------------------------hhcCCCCCCCHHHHH
Confidence            45788999999999999999998865431                                    234456677899999


Q ss_pred             HHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHH
Q 035705          461 TQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVI  540 (758)
Q Consensus       461 ~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll  540 (758)
                      +..|+.+++++|++. |++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+
T Consensus        48 ~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  126 (231)
T 3aji_A           48 CSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL  126 (231)
T ss_dssp             HHHTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHcCcHHHHHHHHHh-CCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            999999999999998 8999999999999999999999999999999999999999999999999999999999999777


Q ss_pred             HhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCC
Q 035705          541 LEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARN  620 (758)
Q Consensus       541 ~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g  620 (758)
                      . .+.+++..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|++++.+|..|
T Consensus       127 ~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  205 (231)
T 3aji_A          127 E-GGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEE  205 (231)
T ss_dssp             H-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTS
T ss_pred             H-cCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCC
Confidence            4 577888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCc
Q 035705          621 ETALALARENGNGNEAENVILDELALTLVLDGTY  654 (758)
Q Consensus       621 ~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~  654 (758)
                      +||||+|+..++.+         ++++|.++|++
T Consensus       206 ~t~l~~A~~~~~~~---------i~~lL~~~~a~  230 (231)
T 3aji_A          206 KTPLQVAKGGLGLI---------LKRLAEGEEAS  230 (231)
T ss_dssp             CCHHHHSCHHHHHH---------HHHHHHHHHHC
T ss_pred             CCHHHHHHhhHHHH---------HHHHHcccccc
Confidence            99999999888776         45566666654

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=5.4e-39  Score=333.95  Aligned_cols=272  Identities=13%  Similarity=0.062  Sum_probs=194.6

Q ss_pred             HcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHH
Q 035705          322 LCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKF  401 (758)
Q Consensus       322 ~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~  401 (758)
                      .....++|++|+++|++++.    .+..|.|+++     |+.++|++|+++|++++.      ++++.|+......    
T Consensus        28 ~~~~~dlv~~ll~~ga~i~~----~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~------~~~~~a~~~~~~~----   88 (327)
T 1sw6_A           28 ITFTHDLTSDFLSSPLKIMK----ALPSPVVNDN-----EQKMKLEAFLQRLLFPEI------QEMPTSLNNDSSN----   88 (327)
T ss_dssp             EECCTTCCCSTTTSSCCCEE----CBCCCCCCCH-----HHHHHHHHHHHHHHC--------------------------
T ss_pred             hhhcCchHHHHhhCCccccc----CCCCCCcccC-----chhHHHHHHHHhccCCcc------ccchHhhhccccc----
Confidence            35556667777777766554    5566666665     667777777777666432      3444443321000    


Q ss_pred             HHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCccc-CCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCC
Q 035705          402 LASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQS-SNASRFSPLMFVTQANDVDALKKLIEWADVDL  480 (758)
Q Consensus       402 Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~-~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~  480 (758)
                            .-........+..|++    ......++++.|++.|++++. .+..|.||||+|+..|+.+++++|+++ |+++
T Consensus        89 ------~~~~~~~~~~~~~~~a----~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~-Gad~  157 (327)
T 1sw6_A           89 ------RNSEGGSSNQQQQHVS----FDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH-GSNR  157 (327)
T ss_dssp             ---------------------C----HHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHT-TCCT
T ss_pred             ------ccccccCCccchhHHH----HHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCC
Confidence                  0000011111223444    234566788888888888888 788999999999999999999999998 8999


Q ss_pred             cccCCCCCcHHHHHHHcCC---HHHHHHHHhCC-CCCCcCCCCCCcHHHHHHH----cCChhHHHHHHHhh---------
Q 035705          481 DEQDADGFSAAMIAAAAGH---VEAFRLLLHAG-ANIKLQNKYGETAITLAEL----NRNGEVLEQVILEY---------  543 (758)
Q Consensus       481 ~~~~~~g~t~L~~A~~~g~---~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~----~~~~~~v~~ll~~~---------  543 (758)
                      +.+|..|.||||+|+..|+   .++++.|++.+ ++++.++..|+||||+|+.    .|+.++++.|+...         
T Consensus       158 n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~  237 (327)
T 1sw6_A          158 LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQN  237 (327)
T ss_dssp             TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGG
T ss_pred             CCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccc
Confidence            9999999999999999988   67888888776 7799999999999999999    89999999888764         


Q ss_pred             ----------ccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCC
Q 035705          544 ----------ALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKC  613 (758)
Q Consensus       544 ----------~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~  613 (758)
                                +.+++..+..|.||||.|+.      +++|+++  ++|.+|..|+||||+|+..|+.++|++|+++|+|+
T Consensus       238 ~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~  309 (327)
T 1sw6_A          238 RPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADP  309 (327)
T ss_dssp             CCEEEC----------------CHHHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCT
T ss_pred             hHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence                      78889999999999999996      9999998  79999999999999999999999999999999999


Q ss_pred             CCCCCCCCcHHHHHHHCC
Q 035705          614 DIENARNETALALARENG  631 (758)
Q Consensus       614 ~~~d~~g~t~L~~A~~~~  631 (758)
                      +.+|..|+||||+|+++|
T Consensus       310 ~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          310 FIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             TCCCTTSCCGGGGTCC--
T ss_pred             cccCCCCCCHHHHHHhcC
Confidence            999999999999998764

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=2.5e-37  Score=314.93  Aligned_cols=223  Identities=14%  Similarity=0.104  Sum_probs=120.6

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHh
Q 035705          346 YSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKS  425 (758)
Q Consensus       346 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~  425 (758)
                      .|..|.||||+|+..|+.+++++|+++|++++..+  |.||||+|+..|+.+++++|+++|++++..+..          
T Consensus        27 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~----------   94 (285)
T 3kea_A           27 ADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDK----------   94 (285)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTT----------
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC----------
Confidence            44555555555555555555555555555555442  455555555555555555555555444433322          


Q ss_pred             cccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCC-CcHHHHHHHcCCHHHHH
Q 035705          426 SRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADG-FSAAMIAAAAGHVEAFR  504 (758)
Q Consensus       426 ~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g-~t~L~~A~~~g~~~~v~  504 (758)
                                                 |.||||+|+..|+.+++++|+++ |++++.++..| .||||+|+..|+.++++
T Consensus        95 ---------------------------g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~~t~L~~A~~~~~~~~v~  146 (285)
T 3kea_A           95 ---------------------------GNTALYYAVDSGNMQTVKLFVKK-NWRLMFYGKTGWKTSFYHAVMLNDVSIVS  146 (285)
T ss_dssp             ---------------------------SCCHHHHHHHTTCHHHHHHHHHH-CGGGGGCSSSGGGSHHHHHHHTTCHHHHH
T ss_pred             ---------------------------CCcHHHHHHHcCCHHHHHHHHhc-CCCCCccCCCCCCCHHHHHHHcCCHHHHH
Confidence                                       23455555555555555555555 55555555555 45555555555555555


Q ss_pred             HHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCC
Q 035705          505 LLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASD  584 (758)
Q Consensus       505 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d  584 (758)
                      +|+++|+++...                                   ..|.||||+|+..|+.+++++|+++|+++|.+|
T Consensus       147 ~Ll~~g~~~~~~-----------------------------------~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~  191 (285)
T 3kea_A          147 YFLSEIPSTFDL-----------------------------------AILLSCIHITIKNGHVDMMILLLDYMTSTNTNN  191 (285)
T ss_dssp             HHHTTSCTTCCC-----------------------------------STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTC
T ss_pred             HHHhCCCccccc-----------------------------------cCCccHHHHHHHcChHHHHHHHHHcCCCCCccc
Confidence            555555443111                                   145566666666666666666666666666666


Q ss_pred             CCCCcH-HHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCcccccc
Q 035705          585 ADGYTP-LMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHT  659 (758)
Q Consensus       585 ~~g~tp-L~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~~~~~d  659 (758)
                      ..|+|| ||+|+..++.+++++|+++|+|++.+|.       .|+..|+.+         ++++|+++|++++..+
T Consensus       192 ~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~~~---------iv~~Ll~~g~~~~~~~  251 (285)
T 3kea_A          192 SLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDDAE---------IAKMIIEKHVEYKSDS  251 (285)
T ss_dssp             CCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGTTTCHH---------HHHHHHHHHHHHTTCT
T ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhhcCCHH---------HHHHHHHcCCCCCCcc
Confidence            666665 6666666666666666666666665552       334455543         4445555555554433

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=4.8e-36  Score=298.16  Aligned_cols=232  Identities=19%  Similarity=0.252  Sum_probs=188.6

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHh
Q 035705          346 YSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKS  425 (758)
Q Consensus       346 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~  425 (758)
                      .+..+.|||+.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+            
T Consensus         5 ~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~------------   72 (240)
T 3eu9_A            5 IDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLG------------   72 (240)
T ss_dssp             CSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCB------------
T ss_pred             cccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhc------------
Confidence            56778888888888888888888888888888888888888888888888888888888887765432            


Q ss_pred             cccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHH
Q 035705          426 SRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRL  505 (758)
Q Consensus       426 ~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~  505 (758)
                                              +..|.||||.|+..|+.+++++|++. |++++.++..|.||||+|+..|+.+++++
T Consensus        73 ------------------------~~~~~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~  127 (240)
T 3eu9_A           73 ------------------------GDLNSTPLHWATRQGHLSMVVQLMKY-GADPSLIDGEGCSCIHLAAQFGHTSIVAY  127 (240)
T ss_dssp             ------------------------TTTTBCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             ------------------------CCcCCChhHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCHHHHHHH
Confidence                                    22345788888888888888888887 78888888889999999999999999999


Q ss_pred             HHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCC-CCchHHHHHHHcCCHHHHHHHHhcCCCCCCCC
Q 035705          506 LLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGS-AGFYALHRAAKRGDFDLVHTLVSRCYDVNASD  584 (758)
Q Consensus       506 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d  584 (758)
                      |+++|++++..+..|.||||+|+..++...+..++.+.+.+++..+. .|.||||+|+..|+.+++++|+++|++++.+|
T Consensus       128 Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~  207 (240)
T 3eu9_A          128 LIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQN  207 (240)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBC
T ss_pred             HHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence            99999998888888888888888766633333455566677777765 78888888888888888888888888888888


Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHhCCCCCC
Q 035705          585 ADGYTPLMLAAKSGHGSVCQLLISSGAKCD  614 (758)
Q Consensus       585 ~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~  614 (758)
                      ..|+||||+|+..|+.+++++|+++|++..
T Consensus       208 ~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~  237 (240)
T 3eu9_A          208 IKGESALDLAKQRKNVWMINHLQEARQAKG  237 (240)
T ss_dssp             TTSCBHHHHHHHTTCHHHHHHHHHHC----
T ss_pred             CCCCCHHHHHHHcCcHHHHHHHHHhhhccC
Confidence            888888888888888888888888887754

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.5e-37  Score=312.51  Aligned_cols=234  Identities=21%  Similarity=0.238  Sum_probs=127.7

Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHHccCCCCC----CcccCCCCCCcHHHHHHHcCCH-HHHHHHHHcCCCCCCCCCCC
Q 035705          309 ILHNGRTLIHHAILCNNARAVELLLNCAVDKEF----PVQTYSKTELRPIHLAARLGSA-KILRRLISAGCNINSRTAAG  383 (758)
Q Consensus       309 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~----~~~~~~~~g~t~L~~A~~~g~~-~~v~~Ll~~g~~~~~~~~~g  383 (758)
                      .+..+.++|+.|+..|+.++|++|++.|++...    .++..+..+.|||+.|+..+.. .++++|++.|+++|.+|.+|
T Consensus         7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G   86 (269)
T 4b93_B            7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDG   86 (269)
T ss_dssp             CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTS
T ss_pred             cCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCC
Confidence            455566777777777777777777777765321    1233455566666666665554 35666666666666666666


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHc
Q 035705          384 ETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQA  463 (758)
Q Consensus       384 ~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~  463 (758)
                      +||||+|+..|+.+++++|++.|++++..+..|                                     .||++.|+..
T Consensus        87 ~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g-------------------------------------~t~l~~a~~~  129 (269)
T 4b93_B           87 SSPLHVAALHGRADLIPLLLKHGANAGARNADQ-------------------------------------AVPLHLACQQ  129 (269)
T ss_dssp             CCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTC-------------------------------------CCHHHHHHHH
T ss_pred             CCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCC-------------------------------------CCcccccccc
Confidence            666666666666666666666655554433332                                     2444555555


Q ss_pred             CCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhh
Q 035705          464 NDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEY  543 (758)
Q Consensus       464 ~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~  543 (758)
                      ++.+++++|++. |++++.+|..|.||||+|+..|+.++|++|+++|++++                             
T Consensus       130 ~~~~~~~~Ll~~-g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn-----------------------------  179 (269)
T 4b93_B          130 GHFQVVKCLLDS-NAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASIN-----------------------------  179 (269)
T ss_dssp             TCHHHHHHHHHT-TCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTT-----------------------------
T ss_pred             ChHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC-----------------------------
Confidence            555555555554 45555555555555555555555555555555555554                             


Q ss_pred             ccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCc-HHHHHHHHhCCCCCC
Q 035705          544 ALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGH-GSVCQLLISSGAKCD  614 (758)
Q Consensus       544 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~-~~iv~~Ll~~gad~~  614 (758)
                           ..+..|+||||+|+..|+.++|++|+++|+|+|.+|..|+||||+|+++++ .++++.|.+.+++++
T Consensus       180 -----~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~~~~  246 (269)
T 4b93_B          180 -----ASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVASLD  246 (269)
T ss_dssp             -----CBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC---------
T ss_pred             -----ccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhchhhh
Confidence                 445566677888888889999999999999999999999999999988775 345555555555443

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=8.2e-37  Score=311.07  Aligned_cols=242  Identities=19%  Similarity=0.175  Sum_probs=206.1

Q ss_pred             hHHHHHHHhhccCCCCCCCCchHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 035705          294 SGAILHMLFQHISPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAG  373 (758)
Q Consensus       294 ~~~~~~~ll~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  373 (758)
                      ..++.++|........+..|.||||+|+..|+.++|++|++.|++++.      .+|.||||+|+..|+.+++++|+++|
T Consensus        12 ~~~v~~lL~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~------~~g~t~L~~A~~~g~~~~v~~Ll~~g   85 (285)
T 3kea_A           12 SKQLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL------LENEFPLHQAATLEDTKIVKILLFSG   85 (285)
T ss_dssp             HHHHHHHHHSTTTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSC------CTTCCHHHHHTTSSSCHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC------CCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            446667776664444688999999999999999999999999999876      25899999999999999999999999


Q ss_pred             CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCC
Q 035705          374 CNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASR  453 (758)
Q Consensus       374 ~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~  453 (758)
                      ++++.++..|.||||+|+..|+.+++++|+++|++++..+..|.                                    
T Consensus        86 a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~------------------------------------  129 (285)
T 3kea_A           86 LDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGW------------------------------------  129 (285)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGG------------------------------------
T ss_pred             CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCC------------------------------------
Confidence            99999999999999999999999999999999988776655441                                    


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCh
Q 035705          454 FSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNG  533 (758)
Q Consensus       454 ~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  533 (758)
                      .||||+|+..|+.+++++|+++ +.++... ..|.||||+|+..|+.+++++|+++|++++.++..|+||          
T Consensus       130 ~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~----------  197 (285)
T 3kea_A          130 KTSFYHAVMLNDVSIVSYFLSE-IPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIP----------  197 (285)
T ss_dssp             GSHHHHHHHTTCHHHHHHHHTT-SCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCT----------
T ss_pred             CCHHHHHHHcCCHHHHHHHHhC-CCccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCCh----------
Confidence            4789999999999999999998 5655322 289999999999999999999999998887776655543          


Q ss_pred             hHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCC
Q 035705          534 EVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKC  613 (758)
Q Consensus       534 ~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~  613 (758)
                                             |||+|+..|+.+++++|+++|++++.+|.       .|+..|+.+++++|+++|+++
T Consensus       198 -----------------------~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~~~iv~~Ll~~g~~~  247 (285)
T 3kea_A          198 -----------------------DIKLAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDDAEIAKMIIEKHVEY  247 (285)
T ss_dssp             -----------------------THHHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGTTTCHHHHHHHHHHHHHH
T ss_pred             -----------------------HHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhhcCCHHHHHHHHHcCCCC
Confidence                                   27777778888999999999999998873       567789999999999999987


Q ss_pred             CCCCCC
Q 035705          614 DIENAR  619 (758)
Q Consensus       614 ~~~d~~  619 (758)
                      +..+..
T Consensus       248 ~~~~~~  253 (285)
T 3kea_A          248 KSDSYT  253 (285)
T ss_dssp             TTCTTT
T ss_pred             CCcccc
Confidence            765443

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=9.8e-37  Score=314.06  Aligned_cols=260  Identities=20%  Similarity=0.232  Sum_probs=224.3

Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCC---------CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhc
Q 035705          356 LAARLGSAKILRRLISAGCNINS---------RTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSS  426 (758)
Q Consensus       356 ~A~~~g~~~~v~~Ll~~g~~~~~---------~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~  426 (758)
                      .++..++.+.++.++....++..         .+..|.|||+.|+..|+.+++++|+++|++++..+..|          
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g----------   73 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDG----------   73 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTC----------
T ss_pred             hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC----------
Confidence            46777888888888877555432         22356799999999999999999999998887665554          


Q ss_pred             ccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHH
Q 035705          427 RWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLL  506 (758)
Q Consensus       427 ~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  506 (758)
                                                 .||||+|+..|+.+++++|++. |++++.++..|.||||+|+..|+.+++++|
T Consensus        74 ---------------------------~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~tpL~~A~~~g~~~~v~~L  125 (299)
T 1s70_B           74 ---------------------------LTALHQACIDDNVDMVKFLVEN-GANINQPDNEGWIPLHAAASCGYLDIAEYL  125 (299)
T ss_dssp             ---------------------------CBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             ---------------------------CCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Confidence                                       4788888999999999999998 899999999999999999999999999999


Q ss_pred             HhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcC-CCCCCCCC
Q 035705          507 LHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRC-YDVNASDA  585 (758)
Q Consensus       507 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~n~~d~  585 (758)
                      +++|++++..+..|.||||+|+..++.++++.++...+.+.+..+..+.++++.        .++.++..+ ......+.
T Consensus       126 l~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~  197 (299)
T 1s70_B          126 ISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLR--------DARQWLNSGHINDVRHAK  197 (299)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--------HHHHHHHHTCCCCCCCTT
T ss_pred             HhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHH--------HHHHHHhccCcchhhhcC
Confidence            999999999999999999999999999999999998887766554444444443        344455554 55566788


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCccccccccCCCc
Q 035705          586 DGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHTKCGKGS  665 (758)
Q Consensus       586 ~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~~~~~d~~g~t~  665 (758)
                      .|.||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+..|+.+         ++++|+++|++++.+|..|+||
T Consensus       198 ~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~---------~v~~Ll~~gad~~~~d~~g~t~  268 (299)
T 1s70_B          198 SGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEE---------ACRILVENLCDMEAVNKVGQTA  268 (299)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHH---------HHHHHHHTTCCTTCCCTTSCCT
T ss_pred             CCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHH---------HHHHHHHcCCCCCCcCCCCCCH
Confidence            9999999999999999999999999999999999999999999999986         6678899999999999999999


Q ss_pred             chHHH
Q 035705          666 PHVKL  670 (758)
Q Consensus       666 l~~a~  670 (758)
                      +++|.
T Consensus       269 l~~A~  273 (299)
T 1s70_B          269 FDVAD  273 (299)
T ss_dssp             TTSCC
T ss_pred             HHHHH
Confidence            99983

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=5.4e-38  Score=326.41  Aligned_cols=277  Identities=12%  Similarity=0.048  Sum_probs=213.6

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcc
Q 035705          348 KTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSR  427 (758)
Q Consensus       348 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~  427 (758)
                      ....+|++    ....+++++|+++|++++..+..|.|+++     |+.+++++|+++|++++.      +++++|....
T Consensus        21 ~~~~~~~~----~~~~dlv~~ll~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~------~~~~~a~~~~   85 (327)
T 1sw6_A           21 DRTAGPII----TFTHDLTSDFLSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEI------QEMPTSLNND   85 (327)
T ss_dssp             ----CCEE----ECCTTCCCSTTTSSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------
T ss_pred             cccccchh----hhcCchHHHHhhCCcccccCCCCCCcccC-----chhHHHHHHHHhccCCcc------ccchHhhhcc
Confidence            34455555    46678899999999999999999999987     899999999999988643      3444443210


Q ss_pred             cccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcc-cCCCCCcHHHHHHHcCCHHHHHHH
Q 035705          428 WTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDE-QDADGFSAAMIAAAAGHVEAFRLL  506 (758)
Q Consensus       428 ~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~L  506 (758)
                      .              +..-........+.+|.++..+..++++.|++. |+++|. +|..|.||||+|+..|+.++|++|
T Consensus        86 ~--------------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~-g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~L  150 (327)
T 1sw6_A           86 S--------------SNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNT-QLNLNIPVDEHGNTPLHWLTSIANLELVKHL  150 (327)
T ss_dssp             --------------------------------CHHHHHHHHHHHCTTS-CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             c--------------ccccccccCCccchhHHHHHhhHHHHHHHHHhc-CCCcccccCCCCCcHHHHHHHcCCHHHHHHH
Confidence            0              000000111122456888888888999999987 899999 899999999999999999999999


Q ss_pred             HhCCCCCCcCCCCCCcHHHHHHHcCC---hhHHHHHHHhhccccCCCCCCCchHHHHHHH----cCCHHHHHHHHhc---
Q 035705          507 LHAGANIKLQNKYGETAITLAELNRN---GEVLEQVILEYALEEGQKGSAGFYALHRAAK----RGDFDLVHTLVSR---  576 (758)
Q Consensus       507 l~~g~~~~~~~~~g~t~L~~A~~~~~---~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~----~g~~~~v~~Ll~~---  576 (758)
                      +++|++++.+|..|+||||+|+..|+   .++++.|+.....+++..|..|+||||+|+.    .|+.+++++|++.   
T Consensus       151 l~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~  230 (327)
T 1sw6_A          151 VKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMG  230 (327)
T ss_dssp             HHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred             HHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHH
Confidence            99999999999999999999999998   7888888888878899999999999999999    8999999999987   


Q ss_pred             -----------------CCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHH
Q 035705          577 -----------------CYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENV  639 (758)
Q Consensus       577 -----------------ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~l  639 (758)
                                       |++++.+|..|+||||+|+.      +++|+++  +++.+|..|+||||+|++.|+.+     
T Consensus       231 ~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~-----  297 (327)
T 1sw6_A          231 WIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNIS-----  297 (327)
T ss_dssp             HHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHH-----
T ss_pred             HHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHH-----
Confidence                             89999999999999999985      9999998  68999999999999999999986     


Q ss_pred             HHHHHHHHHHhCCCccccccccCCCcchHHHH
Q 035705          640 ILDELALTLVLDGTYVKKHTKCGKGSPHVKLL  671 (758)
Q Consensus       640 l~~~~~~~L~~~g~~~~~~d~~g~t~l~~a~~  671 (758)
                          ++++|+++|++++.+|..|+||||+|+.
T Consensus       298 ----~v~~Ll~~Gad~~~~d~~G~TpL~~A~~  325 (327)
T 1sw6_A          298 ----IVDALLDYGADPFIANKSGLRPVDFGAG  325 (327)
T ss_dssp             ----HHHHHHHTTCCTTCCCTTSCCGGGGTCC
T ss_pred             ----HHHHHHHcCCCCcccCCCCCCHHHHHHh
Confidence                6778899999999999999999999854

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=7.9e-36  Score=294.08  Aligned_cols=209  Identities=22%  Similarity=0.187  Sum_probs=187.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCC--CCCCc-CCCCCCcHHHHHHH
Q 035705          453 RFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAG--ANIKL-QNKYGETAITLAEL  529 (758)
Q Consensus       453 ~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~-~~~~g~t~L~~A~~  529 (758)
                      |.||||.|+..|+.+++++|++......+.++..|.||||+|+..|+.+++++|+++|  .+++. .+..|.||||+|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            5689999999999999999999843334458899999999999999999999999999  55555 77899999999999


Q ss_pred             cCChhHHHHHHHhh-ccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHh
Q 035705          530 NRNGEVLEQVILEY-ALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLIS  608 (758)
Q Consensus       530 ~~~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~  608 (758)
                      .|+.+++++|+... ..+++..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++
T Consensus        82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  161 (228)
T 2dzn_A           82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG  161 (228)
T ss_dssp             HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            99999999887664 37888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC-CCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHH-hCCCccccccccCCCcchHHH
Q 035705          609 SG-AKCDIENARNETALALARENGNGNEAENVILDELALTLV-LDGTYVKKHTKCGKGSPHVKL  670 (758)
Q Consensus       609 ~g-ad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~-~~g~~~~~~d~~g~t~l~~a~  670 (758)
                      +| ++++.+|..|+||||+|+..++.+         ++++|+ +.|++++.+|..|+||+++|+
T Consensus       162 ~g~~~~~~~d~~g~t~L~~A~~~~~~~---------~v~~Ll~~~ga~~~~~~~~g~t~l~~A~  216 (228)
T 2dzn_A          162 LGKSAVNWQDKQGWTPLFHALAEGHGD---------AAVLLVEKYGAEYDLVDNKGAKAEDVAL  216 (228)
T ss_dssp             TTCCCSCCCCTTSCCHHHHHHHTTCHH---------HHHHHHHHHCCCSCCBCTTSCBGGGGCS
T ss_pred             cCcccccCcCCCCCCHHHHHHHcCCHH---------HHHHHHHhcCCCCCccCCCCCcHHHHHH
Confidence            99 999999999999999999999986         556777 789999999999999999973

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=7.8e-36  Score=294.12  Aligned_cols=212  Identities=23%  Similarity=0.384  Sum_probs=150.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhccc
Q 035705          350 ELRPIHLAARLGSAKILRRLISAGCNINS-RTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRW  428 (758)
Q Consensus       350 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  428 (758)
                      |.||||.|+..|+.+++++|++.|.++.. .+..|.||||+|+..|+.+++++|+++|++++...               
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~---------------   66 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDD---------------   66 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGG---------------
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccc---------------
Confidence            56777888777777888877777766543 67777888888888888888888887774433211               


Q ss_pred             ccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcC--CCCcccCCCCCcHHHHHHHcCCHHHHHHH
Q 035705          429 TLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWAD--VDLDEQDADGFSAAMIAAAAGHVEAFRLL  506 (758)
Q Consensus       429 ~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~--~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  506 (758)
                                         ..+..|.||||+|+..|+.+++++|++. +  .+++..+..|.||||+|+..|+.+++++|
T Consensus        67 -------------------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L  126 (228)
T 2dzn_A           67 -------------------YPDDSGWTPFHIACSVGNLEVVKSLYDR-PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFL  126 (228)
T ss_dssp             -------------------CCCTTSCCHHHHHHHHCCHHHHHHHHSS-SSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             -------------------cCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCcccccCCcCCCCHHHHHHHcCCHhHHHHH
Confidence                               0233445566666666666666666665 4  66667777777777777777777777777


Q ss_pred             HhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcC-CCCCCCCC
Q 035705          507 LHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRC-YDVNASDA  585 (758)
Q Consensus       507 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~n~~d~  585 (758)
                      +++|++++.++..                                  |.||||+|+..|+.+++++|+++| ++++.+|.
T Consensus       127 l~~g~~~~~~~~~----------------------------------g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~  172 (228)
T 2dzn_A          127 IENGASVRIKDKF----------------------------------NQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK  172 (228)
T ss_dssp             HHTTCCSCCCCTT----------------------------------SCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCT
T ss_pred             HHcCCCccccCCC----------------------------------CCCHHHHHHHcCCHHHHHHHHhcCcccccCcCC
Confidence            7777777665554                                  445566666666777777777777 77787888


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHH-hCCCCCCCCCCCCCcHHHHHHHC
Q 035705          586 DGYTPLMLAAKSGHGSVCQLLI-SSGAKCDIENARNETALALAREN  630 (758)
Q Consensus       586 ~g~tpL~~A~~~~~~~iv~~Ll-~~gad~~~~d~~g~t~L~~A~~~  630 (758)
                      .|+||||+|+..|+.+++++|+ ++|+|++.+|..|+|||++|++.
T Consensus       173 ~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~  218 (228)
T 2dzn_A          173 QGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE  218 (228)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH
Confidence            8888888888888888888888 77888888888888888887654

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=9.7e-36  Score=292.31  Aligned_cols=217  Identities=18%  Similarity=0.231  Sum_probs=134.6

Q ss_pred             CCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 035705          324 NNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLA  403 (758)
Q Consensus       324 g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll  403 (758)
                      |+.+++++|++.|++++..   .+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+
T Consensus         2 g~~~~i~~Ll~~g~~~~~~---~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll   78 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQ---TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI   78 (223)
T ss_dssp             ---CCEETTEETTCCTTCC---CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CcHHHHHHHHHcCCCcccc---cCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            4445555555555554431   2445555555555555555555555555555555555555555555555555555555


Q ss_pred             HCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccc
Q 035705          404 SEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQ  483 (758)
Q Consensus       404 ~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~  483 (758)
                      ++++                                                                      .+++..
T Consensus        79 ~~~~----------------------------------------------------------------------~~~~~~   88 (223)
T 2f8y_A           79 RNRA----------------------------------------------------------------------TDLDAR   88 (223)
T ss_dssp             HBTT----------------------------------------------------------------------SCTTCC
T ss_pred             HcCC----------------------------------------------------------------------CCcccC
Confidence            5443                                                                      244444


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHH
Q 035705          484 DADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK  563 (758)
Q Consensus       484 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~  563 (758)
                      +..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..|+.+++++|+.. +.+++..+..|.||||+|+.
T Consensus        89 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~  167 (223)
T 2f8y_A           89 MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN-GANKDMQNNREETPLFLAAR  167 (223)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHH
T ss_pred             CCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCcCHHHHHHH
Confidence            44455555555555555555555555555555555555555555555555554444433 44445555667777888888


Q ss_pred             cCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCC
Q 035705          564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCD  614 (758)
Q Consensus       564 ~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~  614 (758)
                      .|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|+...
T Consensus       168 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~  218 (223)
T 2f8y_A          168 EGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS  218 (223)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred             cCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence            889999999999999999999999999999999999999999999998743

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=2.9e-35  Score=292.52  Aligned_cols=232  Identities=22%  Similarity=0.207  Sum_probs=207.2

Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCc
Q 035705          376 INSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFS  455 (758)
Q Consensus       376 ~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t  455 (758)
                      ++..|..|.|||+.|+..|+.+++++|++.|++++..+..|                                     .|
T Consensus         2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g-------------------------------------~t   44 (240)
T 3eu9_A            2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKEN-------------------------------------VT   44 (240)
T ss_dssp             CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS-------------------------------------CC
T ss_pred             ccccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCC-------------------------------------CC
Confidence            45678889999999999999999999999998877665544                                     46


Q ss_pred             HHHHHHHcCCHHHHHHHHHhcCCCCcccC-CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChh
Q 035705          456 PLMFVTQANDVDALKKLIEWADVDLDEQD-ADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGE  534 (758)
Q Consensus       456 ~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  534 (758)
                      |||.|+..|+.+++++|++. +.+++..+ ..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+
T Consensus        45 ~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~  123 (240)
T 3eu9_A           45 LLHWAAINNRIDLVKYYISK-GAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTS  123 (240)
T ss_dssp             HHHHHHHTTCHHHHHHHHHT-TCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHhCCHHHHHHHHHc-CCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHH
Confidence            88888999999999999998 67777554 45999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccccCCCCCCCchHHHHHHHcCC-HHHHHHHHhcCCCCCCCCC-CCCcHHHHHHHcCcHHHHHHHHhCCCC
Q 035705          535 VLEQVILEYALEEGQKGSAGFYALHRAAKRGD-FDLVHTLVSRCYDVNASDA-DGYTPLMLAAKSGHGSVCQLLISSGAK  612 (758)
Q Consensus       535 ~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~-~~~v~~Ll~~ga~~n~~d~-~g~tpL~~A~~~~~~~iv~~Ll~~gad  612 (758)
                      ++++|+. .+.+++..+..|.||||+|+..++ .+++++|++.|++++..+. .|+||||+|+..|+.+++++|+++|++
T Consensus       124 ~~~~Ll~-~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  202 (240)
T 3eu9_A          124 IVAYLIA-KGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN  202 (240)
T ss_dssp             HHHHHHH-TTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCC
T ss_pred             HHHHHHh-cCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9997775 577888999999999999997765 8999999999999999997 999999999999999999999999999


Q ss_pred             CCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCcc
Q 035705          613 CDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYV  655 (758)
Q Consensus       613 ~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~~  655 (758)
                      ++.+|..|+|||++|++.++.++         +++|+++|++.
T Consensus       203 ~~~~~~~g~t~l~~A~~~~~~~~---------v~~L~~~~~~~  236 (240)
T 3eu9_A          203 VDAQNIKGESALDLAKQRKNVWM---------INHLQEARQAK  236 (240)
T ss_dssp             TTCBCTTSCBHHHHHHHTTCHHH---------HHHHHHHC---
T ss_pred             CCCcCCCCCCHHHHHHHcCcHHH---------HHHHHHhhhcc
Confidence            99999999999999999999974         55666666654

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=2.6e-35  Score=289.28  Aligned_cols=213  Identities=22%  Similarity=0.243  Sum_probs=195.0

Q ss_pred             HHHHHHHHHcCCCcccC-CCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q 035705          433 QQAVVDSIRSGNIIQSS-NASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGA  511 (758)
Q Consensus       433 ~~~~~~ll~~g~~~~~~-~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~  511 (758)
                      .+++++|++.|.+++.. +..|.||||+|+..|+.+++++|++. |++++..+..|.||||+|+..|+.+++++|++.+.
T Consensus         4 ~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~   82 (223)
T 2f8y_A            4 PAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA-SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA   82 (223)
T ss_dssp             -CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTT
T ss_pred             HHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            34455566666666554 67788999999999999999999998 89999999999999999999999999999999987


Q ss_pred             -CCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcH
Q 035705          512 -NIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTP  590 (758)
Q Consensus       512 -~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tp  590 (758)
                       +++..+..|.||||+|+..|+.+++++|+. .+.+++..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||
T Consensus        83 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  161 (223)
T 2f8y_A           83 TDLDARMHDGTTPLILAARLAVEGMLEDLIN-SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP  161 (223)
T ss_dssp             SCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred             CCcccCCCCCCcHHHHHHHhCcHHHHHHHHH-cCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCH
Confidence             899999999999999999999999997776 678889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCccc
Q 035705          591 LMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVK  656 (758)
Q Consensus       591 L~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~~~  656 (758)
                      ||+|+..|+.+++++|+++|++++.+|..|+|||++|++.++.+         ++++|+++|+...
T Consensus       162 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~---------i~~~L~~~g~~~~  218 (223)
T 2f8y_A          162 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHD---------IVRLLDEYNLVRS  218 (223)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH---------HHHHHHHTTCSSC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchH---------HHHHHHHcCCCcc
Confidence            99999999999999999999999999999999999999999996         5668888888644

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=2.1e-35  Score=292.47  Aligned_cols=213  Identities=19%  Similarity=0.112  Sum_probs=192.7

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHhc---CCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHH
Q 035705          448 SSNASRFSPLMFVTQANDVDALKKLIEWA---DVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAI  524 (758)
Q Consensus       448 ~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~---~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L  524 (758)
                      ..+.+|.||||+|+..|+.+++++|++..   +.+++.++..|.||||+|+..|+.+++++|+++|++++.++..|.|||
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L   82 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL   82 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHH
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence            45778999999999999999999999873   237999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChhHHHHHHHhhc-----cccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCC-CCCcHHHHHHHcC
Q 035705          525 TLAELNRNGEVLEQVILEYA-----LEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDA-DGYTPLMLAAKSG  598 (758)
Q Consensus       525 ~~A~~~~~~~~v~~ll~~~~-----~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~-~g~tpL~~A~~~~  598 (758)
                      |+|+..|+.+++++|+....     ...+..+..|.||||+|+..|+.+++++|+++|++++.++. .|+||||+|+..|
T Consensus        83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~  162 (236)
T 1ikn_D           83 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ  162 (236)
T ss_dssp             HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcC
Confidence            99999999999998887653     33677888999999999999999999999999999999998 9999999999999


Q ss_pred             cHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCccc--cccccCCCcchHH
Q 035705          599 HGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVK--KHTKCGKGSPHVK  669 (758)
Q Consensus       599 ~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~~~--~~d~~g~t~l~~a  669 (758)
                      +.+++++|+++|++++.+|..|+||||+|+..++.+         ++++|+++|++..  ..+..|.||.+.+
T Consensus       163 ~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~---------~~~~Ll~~ga~~~~~~~~~~~~~~~~~~  226 (236)
T 1ikn_D          163 NPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTR---------IQQQLGQLTLENLQMLPESEDEESYDTE  226 (236)
T ss_dssp             CHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHH---------HHHHHHTTSCGGGSSCCCCCTTTCCCCC
T ss_pred             CHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchH---------HHHHHHHcchhhhhcCCccchHHHHhhh
Confidence            999999999999999999999999999999999986         6778999999877  8888999987653

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=1.2e-33  Score=272.46  Aligned_cols=193  Identities=23%  Similarity=0.331  Sum_probs=184.0

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHc
Q 035705          451 ASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELN  530 (758)
Q Consensus       451 ~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  530 (758)
                      ..+.||||.|+..|+.+.++.|+...+.+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~   82 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ   82 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            45679999999999999999999997779999999999999999999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcC-CCCCCCCCCCCcHHHHHHHcCc-----HHHHH
Q 035705          531 RNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRC-YDVNASDADGYTPLMLAAKSGH-----GSVCQ  604 (758)
Q Consensus       531 ~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~n~~d~~g~tpL~~A~~~~~-----~~iv~  604 (758)
                      |+.+++++|+...+.+++..+..|.||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..++     .++++
T Consensus        83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~  162 (201)
T 3hra_A           83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK  162 (201)
T ss_dssp             TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred             CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHH
Confidence            99999999999999999999999999999999999999999999999 9999999999999999999988     99999


Q ss_pred             HHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCC
Q 035705          605 LLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDG  652 (758)
Q Consensus       605 ~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g  652 (758)
                      +|+++|++++.+|..|+||||+|++.|+.+         ++++|+++|
T Consensus       163 ~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~---------~~~~Ll~~G  201 (201)
T 3hra_A          163 LLMENGADQSIKDNSGRTAMDYANQKGYTE---------ISKILAQYN  201 (201)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHHHHHHHTCHH---------HHHHHHTCC
T ss_pred             HHHHCCCCCCccCCCCCCHHHHHHHcCCHh---------HHHHHHhcC
Confidence            999999999999999999999999999997         455666655

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=8e-35  Score=288.35  Aligned_cols=224  Identities=21%  Similarity=0.250  Sum_probs=162.2

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 035705          310 LHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMI  389 (758)
Q Consensus       310 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~  389 (758)
                      +.+|.||||+|+..|+.+++++|++.+......++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+
T Consensus         5 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~   84 (236)
T 1ikn_D            5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHL   84 (236)
T ss_dssp             --CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHH
T ss_pred             CCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence            45667777777777777777777666553322233456667777777777777777777777777777777777777777


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHH
Q 035705          390 CARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDAL  469 (758)
Q Consensus       390 A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v  469 (758)
                      |+..|+.+++++|+++|+++..                                                          
T Consensus        85 A~~~~~~~~v~~Ll~~~~~~~~----------------------------------------------------------  106 (236)
T 1ikn_D           85 ACEQGCLASVGVLTQSCTTPHL----------------------------------------------------------  106 (236)
T ss_dssp             HHHHTCHHHHHHHHHSTTTTSS----------------------------------------------------------
T ss_pred             HHHcCCHHHHHHHHhcccchhH----------------------------------------------------------
Confidence            7777777777777766654321                                                          


Q ss_pred             HHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCC
Q 035705          470 KKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQ  549 (758)
Q Consensus       470 ~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~  549 (758)
                             ...++..+..|.||||+|+..|+.+++++|+++|++++.++.                               
T Consensus       107 -------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-------------------------------  148 (236)
T 1ikn_D          107 -------HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEP-------------------------------  148 (236)
T ss_dssp             -------SCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT-------------------------------
T ss_pred             -------HHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-------------------------------
Confidence                   122456677888888888888889999999888888876654                               


Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCC--CCCCCCCcHHHHH
Q 035705          550 KGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCD--IENARNETALALA  627 (758)
Q Consensus       550 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~--~~d~~g~t~L~~A  627 (758)
                        ..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|+++.  .++..|.||.+.+
T Consensus       149 --~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~  226 (236)
T 1ikn_D          149 --CNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTE  226 (236)
T ss_dssp             --TTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC
T ss_pred             --CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhh
Confidence              145566777778888899999999999999999999999999999999999999999999876  7888999988776


Q ss_pred             HHCC
Q 035705          628 RENG  631 (758)
Q Consensus       628 ~~~~  631 (758)
                      ....
T Consensus       227 ~~~~  230 (236)
T 1ikn_D          227 SEFT  230 (236)
T ss_dssp             ----
T ss_pred             cccc
Confidence            6543

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1e-32  Score=255.36  Aligned_cols=158  Identities=35%  Similarity=0.501  Sum_probs=108.1

Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHH
Q 035705          490 AAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDL  569 (758)
Q Consensus       490 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~  569 (758)
                      +|+.|++.|+.++|++|+++|+|++.+|..|+||||+|+..++.++++.|+ +.+.+++..|..|+||||+|+..|+.++
T Consensus         7 ~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll-~~gad~~~~d~~g~TpLh~A~~~g~~~~   85 (169)
T 4gpm_A            7 RLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLI-SKGADVNAKDSDGRTPLHHAAENGHKEV   85 (169)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH-hcccchhhhccCCCCHHHHHHHcCCHHH
Confidence            455555555555555555555555555555555555555555555555444 3345555566666777777777788888


Q ss_pred             HHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHH
Q 035705          570 VHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLV  649 (758)
Q Consensus       570 v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~  649 (758)
                      +++|+++|+++|.+|..|+||||+|+..|+.++|++|+++|+|++.+|..|+||||+|++.|+.+         ++++|+
T Consensus        86 v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~---------iv~~Ll  156 (169)
T 4gpm_A           86 VKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEE---------VVKLLE  156 (169)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH---------HHHHHH
T ss_pred             HHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHH---------HHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888775         566778


Q ss_pred             hCCCcccc
Q 035705          650 LDGTYVKK  657 (758)
Q Consensus       650 ~~g~~~~~  657 (758)
                      ++||+++.
T Consensus       157 ~~GA~ie~  164 (169)
T 4gpm_A          157 KQGGWLEH  164 (169)
T ss_dssp             TC------
T ss_pred             HCCCCcCC
Confidence            88887764

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=5.3e-32  Score=250.50  Aligned_cols=159  Identities=34%  Similarity=0.474  Sum_probs=148.6

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChh
Q 035705          455 SPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGE  534 (758)
Q Consensus       455 t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  534 (758)
                      ++|+.|++.|+.++|+.|++. |+++|.+|..|.||||+|+..++.+++++|+++|++++.+|..|+||||+|+..|+.+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~-Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~   84 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIEN-GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKE   84 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHH
Confidence            479999999999999999998 8999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCC
Q 035705          535 VLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCD  614 (758)
Q Consensus       535 ~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~  614 (758)
                      ++++|+ +.+.+++..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++||+++
T Consensus        85 ~v~~Ll-~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie  163 (169)
T 4gpm_A           85 VVKLLI-SKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE  163 (169)
T ss_dssp             HHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-----
T ss_pred             HHHHHH-HCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence            999776 5678999999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             C
Q 035705          615 I  615 (758)
Q Consensus       615 ~  615 (758)
                      .
T Consensus       164 ~  164 (169)
T 4gpm_A          164 H  164 (169)
T ss_dssp             -
T ss_pred             C
Confidence            4

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=3.1e-33  Score=283.55  Aligned_cols=214  Identities=19%  Similarity=0.206  Sum_probs=156.0

Q ss_pred             CCcccCCCCCCcHHHHHHHcCCHHHHHHHHHh---cCCCCc----ccCCCCCcHHHHHHHc---CCHHHHHHHHhCCCCC
Q 035705          444 NIIQSSNASRFSPLMFVTQANDVDALKKLIEW---ADVDLD----EQDADGFSAAMIAAAA---GHVEAFRLLLHAGANI  513 (758)
Q Consensus       444 ~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~---~~~~~~----~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~  513 (758)
                      +..+..+..|.||||.|+..|+.++++.|++.   .+.+++    ..+..|.||||+|+..   |+.+++++|+++|+++
T Consensus         4 a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~   83 (273)
T 2pnn_A            4 AGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKT   83 (273)
T ss_dssp             -------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHT
T ss_pred             ccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccc
Confidence            33455666777777777777777777777763   345554    3466777777777765   7777777777776542


Q ss_pred             -------Cc----CCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCC--------------CCchHHHHHHHcCCHH
Q 035705          514 -------KL----QNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGS--------------AGFYALHRAAKRGDFD  568 (758)
Q Consensus       514 -------~~----~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~--------------~g~t~L~~A~~~g~~~  568 (758)
                             +.    .|..|.||||+|+..|+.+++++|+.. +.+++..+.              .|.||||+|+..|+.+
T Consensus        84 ~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~  162 (273)
T 2pnn_A           84 DSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN-GADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLA  162 (273)
T ss_dssp             TCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHH
T ss_pred             cchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcCccccccccccccccccccCCCCHHHHHHHcCCHH
Confidence                   21    455677777777777777777766654 666666665              7999999999999999


Q ss_pred             HHHHHHh---cCCCCCCCCCCCCcHHHHHHHcCc---------HHHHHHHHhCCCCCC-------CCCCCCCcHHHHHHH
Q 035705          569 LVHTLVS---RCYDVNASDADGYTPLMLAAKSGH---------GSVCQLLISSGAKCD-------IENARNETALALARE  629 (758)
Q Consensus       569 ~v~~Ll~---~ga~~n~~d~~g~tpL~~A~~~~~---------~~iv~~Ll~~gad~~-------~~d~~g~t~L~~A~~  629 (758)
                      ++++|++   +|+++|.+|..|+||||+|+..++         .+++++|+++|++++       .+|..|+||||+|++
T Consensus       163 ~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~  242 (273)
T 2pnn_A          163 IVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAAS  242 (273)
T ss_dssp             HHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             HHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHH
Confidence            9999999   999999999999999999999988         899999999999997       489999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHHhCCC-ccccccccCCCcch
Q 035705          630 NGNGNEAENVILDELALTLVLDGT-YVKKHTKCGKGSPH  667 (758)
Q Consensus       630 ~~~~~~~~~ll~~~~~~~L~~~g~-~~~~~d~~g~t~l~  667 (758)
                      .|+.+         ++++|+++|+ |+......+++|-+
T Consensus       243 ~g~~~---------iv~~Ll~~ga~dp~~~~~~~~~~~~  272 (273)
T 2pnn_A          243 SGKIG---------VLAYILQREIHEPECRHAAAHHHHH  272 (273)
T ss_dssp             TTCHH---------HHHHHHHHHTC--------------
T ss_pred             hChHH---------HHHHHHHCCCCCchhhhhhhhhccC
Confidence            99986         6668889999 88888888877643

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=7.8e-33  Score=280.58  Aligned_cols=220  Identities=15%  Similarity=0.173  Sum_probs=160.5

Q ss_pred             cCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHC----CCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcc
Q 035705          372 AGCNINSRTAAGETAAMICARYKHEECLKFLASE----GADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQ  447 (758)
Q Consensus       372 ~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~----g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~  447 (758)
                      .++..+..|..|.||||.|+..|+.++|+.|++.    +++++..+                                 .
T Consensus         2 ~~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~---------------------------------~   48 (273)
T 2pnn_A            2 VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSE---------------------------------F   48 (273)
T ss_dssp             ---------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGG---------------------------------G
T ss_pred             CcccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcc---------------------------------c
Confidence            3556677888899999999999999988888764    44443110                                 0


Q ss_pred             cCCCCCCcHHHHHHHc---CCHHHHHHHHHhcCCC-----------CcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q 035705          448 SSNASRFSPLMFVTQA---NDVDALKKLIEWADVD-----------LDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANI  513 (758)
Q Consensus       448 ~~~~~~~t~L~~a~~~---~~~~~v~~Ll~~~~~~-----------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~  513 (758)
                      ..+..|.||||+|+..   |+.+++++|++. |++           +...|..|.||||+|+..|+.+++++|+++|+++
T Consensus        49 ~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~-ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~  127 (273)
T 2pnn_A           49 KDPETGKTCLLKAMLNLHNGQNDTIALLLDV-ARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV  127 (273)
T ss_dssp             SCTTTCCCHHHHHHHSCBTTBCHHHHHHHHH-HHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             ccCcCCCCHHHHHHHHHhcCChHHHHHHHHh-hccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence            2244556677777765   777777777776 332           2235668888999888888888888888888888


Q ss_pred             CcCCC--------------CCCcHHHHHHHcCChhHHHHHHHh--hccccCCCCCCCchHHHHHHHcCC---------HH
Q 035705          514 KLQNK--------------YGETAITLAELNRNGEVLEQVILE--YALEEGQKGSAGFYALHRAAKRGD---------FD  568 (758)
Q Consensus       514 ~~~~~--------------~g~t~L~~A~~~~~~~~v~~ll~~--~~~~~~~~~~~g~t~L~~A~~~g~---------~~  568 (758)
                      +..+.              .|.||||+|+..|+.+++++|+..  .+.+++..|..|+||||+|+..|+         .+
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~  207 (273)
T 2pnn_A          128 QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTS  207 (273)
T ss_dssp             TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHH
T ss_pred             CccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHH
Confidence            88876              788999999999999998887775  788888888899999999998887         89


Q ss_pred             HHHHHHhcCCCCC-------CCCCCCCcHHHHHHHcCcHHHHHHHHhCCC-CCCCCCCCCCcHHH
Q 035705          569 LVHTLVSRCYDVN-------ASDADGYTPLMLAAKSGHGSVCQLLISSGA-KCDIENARNETALA  625 (758)
Q Consensus       569 ~v~~Ll~~ga~~n-------~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga-d~~~~d~~g~t~L~  625 (758)
                      ++++|+++|+++|       .+|..|+||||+|+..|+.+++++|+++|| |+......+.+|-+
T Consensus       208 ~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~~  272 (273)
T 2pnn_A          208 MYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHHH  272 (273)
T ss_dssp             HHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC--------------
T ss_pred             HHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhccC
Confidence            9999999999997       489999999999999999999999999999 88888877777643

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=2.1e-31  Score=256.76  Aligned_cols=197  Identities=25%  Similarity=0.353  Sum_probs=153.4

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhc
Q 035705          348 KTELRPIHLAARLGSAKILRRLISAGC-NINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSS  426 (758)
Q Consensus       348 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~  426 (758)
                      ..+.||||.|+..|+.+.++.|++.+. +++..+..|.||||+|+..|+.+++++|+++|++++..+..|          
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g----------   72 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSIS----------   72 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS----------
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC----------
Confidence            467788888888888888888888755 888888888888888888888888888888877776554443          


Q ss_pred             ccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHH
Q 035705          427 RWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLL  506 (758)
Q Consensus       427 ~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  506 (758)
                                                 .||||+|+..|+.+++++|++..+.+++..+..|.||||+|+..|+.+++++|
T Consensus        73 ---------------------------~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  125 (201)
T 3hra_A           73 ---------------------------DSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLL  125 (201)
T ss_dssp             ---------------------------CCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHH
T ss_pred             ---------------------------CCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHH
Confidence                                       35677777788888888888666777777777777777777777777777777


Q ss_pred             HhCC-CCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCC
Q 035705          507 LHAG-ANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDA  585 (758)
Q Consensus       507 l~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~  585 (758)
                      +++| ++++.++..|.||||+|+..++..                             .++.+++++|+++|++++.+|.
T Consensus       126 l~~g~~~~~~~~~~g~t~L~~A~~~~~~~-----------------------------~~~~~~v~~Ll~~ga~~~~~~~  176 (201)
T 3hra_A          126 LEDGREDIDFQNDFGYTALIEAVGLREGN-----------------------------QLYQDIVKLLMENGADQSIKDN  176 (201)
T ss_dssp             HHHCCCCTTCCCTTSCCHHHHHHHSSCCS-----------------------------HHHHHHHHHHHHTTCCTTCCCT
T ss_pred             HHcCCCCcCCCCCCCCCHHHHHHHhccch-----------------------------hhHHHHHHHHHHCCCCCCccCC
Confidence            7777 666666665555555554433210                             0128999999999999999999


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhCC
Q 035705          586 DGYTPLMLAAKSGHGSVCQLLISSG  610 (758)
Q Consensus       586 ~g~tpL~~A~~~~~~~iv~~Ll~~g  610 (758)
                      .|+||||+|+..|+.+++++|+++|
T Consensus       177 ~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          177 SGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             CCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            9999999999999999999999987

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.98  E-value=6.8e-33  Score=278.16  Aligned_cols=213  Identities=21%  Similarity=0.214  Sum_probs=156.1

Q ss_pred             CCcHHHHHHHcCCHH----HHHHHHHcCCCCCC----CCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCCCCcccCCCC
Q 035705          350 ELRPIHLAARLGSAK----ILRRLISAGCNINS----RTAAGETAAMICARY---KHEECLKFLASEGADLGLINYAGQC  418 (758)
Q Consensus       350 g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~----~~~~g~t~L~~A~~~---g~~~iv~~Ll~~g~~~~~~~~~g~t  418 (758)
                      |.||||.|+..|+.+    ++++|+++|++++.    .|..|.||||+|+..   |+.+++++|++.|++++..+..   
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~---   78 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL---   78 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCG---
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhh---
Confidence            678999999999986    66777778999988    788999999999998   9999999999888776532200   


Q ss_pred             HHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcC
Q 035705          419 ANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAG  498 (758)
Q Consensus       419 ~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g  498 (758)
                                                                            +   .......|..|.||||+|+..|
T Consensus        79 ------------------------------------------------------~---~~~~~~~d~~g~t~L~~A~~~g  101 (256)
T 2etb_A           79 ------------------------------------------------------V---NAQCTDEFYQGHSALHIAIEKR  101 (256)
T ss_dssp             ------------------------------------------------------G---GCCCCSTTTTTCCHHHHHHHTT
T ss_pred             ------------------------------------------------------c---ccccccccccCCCHHHHHHHcC
Confidence                                                                  0   1122334556777777777777


Q ss_pred             CHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHh---
Q 035705          499 HVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVS---  575 (758)
Q Consensus       499 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~---  575 (758)
                      +.+++++|+++|++++..+..+.+                     ..+.+..+..|.||||+|+..|+.+++++|++   
T Consensus       102 ~~~~v~~Ll~~ga~~~~~~~~~~~---------------------~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~  160 (256)
T 2etb_A          102 SLQCVKLLVENGADVHLRACGRFF---------------------QKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH  160 (256)
T ss_dssp             CHHHHHHHHHTTCCTTCCCCSGGG---------------------SCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred             CHHHHHHHHHcCCCCCcccccccc---------------------cccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence            777777777777777776654331                     12233344557777777777777777777777   


Q ss_pred             cCCCCCCCCCCCCcHHHHHHH--cCcHH-------HHHHHHhCCCCC-------CCCCCCCCcHHHHHHHCCChhhHHHH
Q 035705          576 RCYDVNASDADGYTPLMLAAK--SGHGS-------VCQLLISSGAKC-------DIENARNETALALARENGNGNEAENV  639 (758)
Q Consensus       576 ~ga~~n~~d~~g~tpL~~A~~--~~~~~-------iv~~Ll~~gad~-------~~~d~~g~t~L~~A~~~~~~~~~~~l  639 (758)
                      +|+++|.+|..|+||||+|+.  .++.+       ++++|+++|+++       +.+|..|+||||+|+..|+.++++.|
T Consensus       161 ~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~L  240 (256)
T 2etb_A          161 QPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHI  240 (256)
T ss_dssp             CCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHH
Confidence            777777777777777777777  66666       777777777777       77777777888887777777777777


Q ss_pred             HHHH
Q 035705          640 ILDE  643 (758)
Q Consensus       640 l~~~  643 (758)
                      +...
T Consensus       241 l~~g  244 (256)
T 2etb_A          241 LQRE  244 (256)
T ss_dssp             HHHH
T ss_pred             HhCC
Confidence            7553

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.98  E-value=1.1e-32  Score=276.71  Aligned_cols=113  Identities=23%  Similarity=0.222  Sum_probs=100.2

Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCC-------------CCcHHHHHHHcCcHHHHHHHHh---CCCCC
Q 035705          550 KGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDAD-------------GYTPLMLAAKSGHGSVCQLLIS---SGAKC  613 (758)
Q Consensus       550 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~-------------g~tpL~~A~~~~~~~iv~~Ll~---~gad~  613 (758)
                      .|..|.||||+|+..|+.+++++|+++|++++.+|..             |+||||+|+..|+.+++++|++   +|+|+
T Consensus        86 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~  165 (256)
T 2etb_A           86 EFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASL  165 (256)
T ss_dssp             TTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT
T ss_pred             ccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCc
Confidence            4567999999999999999999999999999999986             9999999999999999999999   99999


Q ss_pred             CCCCCCCCcHHHHHHH--CCChhhHHHHHHHHHHHHHHhCCCcc-------ccccccCCC
Q 035705          614 DIENARNETALALARE--NGNGNEAENVILDELALTLVLDGTYV-------KKHTKCGKG  664 (758)
Q Consensus       614 ~~~d~~g~t~L~~A~~--~~~~~~~~~ll~~~~~~~L~~~g~~~-------~~~d~~g~t  664 (758)
                      +.+|..|+||||+|+.  .++.+..+.+. . ++++|+++|+++       +.+|..|+|
T Consensus       166 n~~d~~g~TpLh~A~~~~~~~~~~~~~~~-~-iv~~Ll~~ga~~~~~~~~~~~~d~~g~t  223 (256)
T 2etb_A          166 EATDSLGNTVLHALVMIADNSPENSALVI-H-MYDGLLQMGARLCPTVQLEEISNHQGLT  223 (256)
T ss_dssp             TCCCTTSCCHHHHHHHHCCSCHHHHHHHH-H-HHHHHHHHHHHHSTTCCGGGCCCTTSCC
T ss_pred             CccCCCCCCHHHHHHHcccCCchhhHHHH-H-HHHHHHHcCCCcccccccccccCCCCCC
Confidence            9999999999999999  77776222211 1 456888899999       999999998

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=1.2e-31  Score=269.74  Aligned_cols=215  Identities=19%  Similarity=0.165  Sum_probs=133.6

Q ss_pred             CCCCcHHHHHHHcCCHHH----HHHHHHcCCCCCCCC----CCCCcHHHHHH---HcCCHHHHHHHHHCCCCCCCcccCC
Q 035705          348 KTELRPIHLAARLGSAKI----LRRLISAGCNINSRT----AAGETAAMICA---RYKHEECLKFLASEGADLGLINYAG  416 (758)
Q Consensus       348 ~~g~t~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~----~~g~t~L~~A~---~~g~~~iv~~Ll~~g~~~~~~~~~g  416 (758)
                      ..++|+||.|++.|+.+.    +++|++.|++++..+    ..|.||||+|+   ..|+.+++++|++.|+++....   
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~---   79 (260)
T 3jxi_A            3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMR---   79 (260)
T ss_dssp             CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHH---
T ss_pred             cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchH---
Confidence            457788888888888884    444444788887655    66888888888   6688888888888776543210   


Q ss_pred             CCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHH
Q 035705          417 QCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAA  496 (758)
Q Consensus       417 ~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~  496 (758)
                                                                            .++   ..+++..|..|.||||+|+.
T Consensus        80 ------------------------------------------------------~~~---~~~~~~~d~~g~t~L~~A~~  102 (260)
T 3jxi_A           80 ------------------------------------------------------EFI---NSPFRDVYYRGQTALHIAIE  102 (260)
T ss_dssp             ------------------------------------------------------HHH---TCCBCCSSEESBCHHHHHHH
T ss_pred             ------------------------------------------------------hhh---cccccccccCCCCHHHHHHH
Confidence                                                                  000   23445555566677777777


Q ss_pred             cCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHh-
Q 035705          497 AGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVS-  575 (758)
Q Consensus       497 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-  575 (758)
                      .|+.++|++|+++|++++..+..+..                    ...+.+..+..|.||||+|+..|+.+++++|++ 
T Consensus       103 ~g~~~~v~~Ll~~ga~~~~~~~~~~~--------------------~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~  162 (260)
T 3jxi_A          103 RRCKHYVELLVEKGADVHAQARGRFF--------------------QPKDEGGYFYFGELPLSLAACTNQPHIVHYLTEN  162 (260)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCEECCC--------------------SSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred             cCCHHHHHHHHhCCCCcCcccccccc--------------------CcccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            77777777777777776666532100                    011222333456666666666666666666666 


Q ss_pred             --cCCCCCCCCCCCCcHHHHHHHcCc---------HHHHHHHHhCCCCC-------CCCCCCCCcHHHHHHHCCChhhHH
Q 035705          576 --RCYDVNASDADGYTPLMLAAKSGH---------GSVCQLLISSGAKC-------DIENARNETALALARENGNGNEAE  637 (758)
Q Consensus       576 --~ga~~n~~d~~g~tpL~~A~~~~~---------~~iv~~Ll~~gad~-------~~~d~~g~t~L~~A~~~~~~~~~~  637 (758)
                        +|+++|.+|..|+||||+|+..++         .+++++|+++|+++       +.+|..|+||||+|++.|+.++++
T Consensus       163 ~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~  242 (260)
T 3jxi_A          163 GHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQ  242 (260)
T ss_dssp             SSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             cccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHH
Confidence              566666666666666666665555         46666666666665       456666666666666666666666


Q ss_pred             HHHHH
Q 035705          638 NVILD  642 (758)
Q Consensus       638 ~ll~~  642 (758)
                      .|+..
T Consensus       243 ~Ll~~  247 (260)
T 3jxi_A          243 HIIRR  247 (260)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            66543

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.97  E-value=6.5e-34  Score=297.59  Aligned_cols=304  Identities=15%  Similarity=0.136  Sum_probs=210.2

Q ss_pred             cCCHHHHHHHHhCCCCCCcchhhhhhccccccccCCCCchhHHHHh-cCCHHHHHHHHHcCCCCccccccCccccccccc
Q 035705          190 RGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVV-SRQISVVRLLLQAGVKMDIKVRMGAWSWDMDTG  268 (758)
Q Consensus       190 ~g~~~iv~~Ll~~g~d~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~-~g~~~iv~~Ll~~ga~~~~~~~~g~~~~~~~~~  268 (758)
                      .+..+.+..+++...+++...               +.+++++|.. .++.+++++|+++|++                 
T Consensus        44 ~~~~~~~~~~~~~~~~~~~~~---------------~ll~~~~a~~~~~~~~~~~~l~~~g~~-----------------   91 (376)
T 2aja_A           44 LSYKEAIHIFLPGTKNMEQVR---------------QLLCLYYAHYNRNAKQLWSDAHKKGIK-----------------   91 (376)
T ss_dssp             SCHHHHHHHCCCCSSHHHHHH---------------HHHHHHHHHTTTTCTTHHHHHHHHTCC-----------------
T ss_pred             ccHHHHHHHHhcCCCCHHHHH---------------HHHHHHHHHhcCCCHHHHHHHHHcCCC-----------------
Confidence            555677777776665554433               4567887776 5788899999888753                 


Q ss_pred             hhhhhhccccccccccchhhhhhhchHHHHHHHhhccCCCCCCCCchHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCC
Q 035705          269 EELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSK  348 (758)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~  348 (758)
                                                                  +.||||+|+..|+.++|++|++.|+.... ....+.
T Consensus        92 --------------------------------------------~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~-~~~~~~  126 (376)
T 2aja_A           92 --------------------------------------------SEVICFVAAITGCSSALDTLCLLLTSDEI-VKVIQA  126 (376)
T ss_dssp             --------------------------------------------HHHHHHHHHHHCCHHHHHHHTTC--CCSS-CC--CH
T ss_pred             --------------------------------------------cCCHHHHHHHcCCHHHHHHHHHcCCcHHH-HHHhcc
Confidence                                                        34899999999999999999999873221 112345


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC--cccCCCCHHHHH
Q 035705          349 TELRPIHLAARLGSAKILRRLISAGCNI---NSRTAAGETAAMICARYKHEECLKFLASEGADLGL--INYAGQCANSIA  423 (758)
Q Consensus       349 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~--~~~~g~t~l~~a  423 (758)
                      .|.||||+|+..|+.++|++|+++|+++   +..+.+ .||||+|+..|+.++|++|+++|++++.  .+..        
T Consensus       127 ~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~--------  197 (376)
T 2aja_A          127 ENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAE--------  197 (376)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHH--------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCC--------
Confidence            6788999999999999999999999763   222233 8999999999999999999999988654  4333        


Q ss_pred             HhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHH-HcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHH
Q 035705          424 KSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVT-QANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEA  502 (758)
Q Consensus       424 ~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~-~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~  502 (758)
                                                   |.||||+|+ ..|+.+++++|++. |.       .|.||||+|+..|+.++
T Consensus       198 -----------------------------g~TpL~~Aa~~~G~~eiv~~Ll~~-ga-------~~~taL~~Aa~~g~~ev  240 (376)
T 2aja_A          198 -----------------------------NYYAFRWAAVGRGHHNVINFLLDC-PV-------MLAYAEIHEFEYGEKYV  240 (376)
T ss_dssp             -----------------------------HHHHHHHHHSTTCCHHHHHHHTTS-HH-------HHHHHHHCTTTTTTTTH
T ss_pred             -----------------------------CCCHHHHHHHHCCCHHHHHHHHhC-CC-------ccchHHHHHHHCCCHHH
Confidence                                         347888899 99999999999985 42       37899999999999999


Q ss_pred             HHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHH---HHHcCCHHHHHHHHhc---
Q 035705          503 FRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHR---AAKRGDFDLVHTLVSR---  576 (758)
Q Consensus       503 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~---A~~~g~~~~v~~Ll~~---  576 (758)
                      +++|+++|++++..+    ++++.|+..|+.+++...-...          +...+..   +...+..+.+++|++.   
T Consensus       241 v~lL~~~ga~~~~~~----~~l~~A~~~g~~~vv~~~~~~~----------~~~~~~~li~~~~~~~~~~~~~Ll~~~~v  306 (376)
T 2aja_A          241 NPFIARHVNRLKEMH----DAFKLSNPDGVFDLVTKSECLQ----------GFYMLRNLIRRNDEVLLDDIRFLLSIPGI  306 (376)
T ss_dssp             HHHHHHHHHHHHHHH----TTTTTTSSSSCCCCSSHHHHHH----------HHHHHHHHHHHCCGGGHHHHHHHHTSTTT
T ss_pred             HHHHHhcCccccccc----HHHHHHHHCCChhhhcHHhhhh----------hHHHHHHHHHcchhhHHHHHHHHHhChhh
Confidence            999999998887654    3677888888887543110000          0000111   1112346777777763   


Q ss_pred             ------CCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHH
Q 035705          577 ------CYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAE  637 (758)
Q Consensus       577 ------ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~  637 (758)
                            |+++|    .+.||||+|+..|+.+++++|++.|   ..++..|+|++.+|-..|..++.+
T Consensus       307 k~l~~~g~~~n----~~~~~L~~A~~~g~~e~v~lLl~~~---~v~~~~~~~~~~~~~~~~~~~~~~  366 (376)
T 2aja_A          307 KALAPTATIPG----DANELLRLALRLGNQGACALLLSIP---SVLALTKANNYYINETGGRLDLRA  366 (376)
T ss_dssp             GGGSSCCSSTT----CCCHHHHHHHHHTCTTHHHHHTTSH---HHHHSCC-----------------
T ss_pred             hhhhccCCCCC----CccHHHHHHHHcCcHHHHHHHHcCh---HHHHHHHHhccccccccccccHHH
Confidence                  44443    5679999999999999999999975   667889999999999999998655

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=5.8e-31  Score=264.79  Aligned_cols=88  Identities=26%  Similarity=0.189  Sum_probs=82.1

Q ss_pred             cccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCC--------------CCCCcHHHHHHHcCcHHHHHHHHh--
Q 035705          545 LEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASD--------------ADGYTPLMLAAKSGHGSVCQLLIS--  608 (758)
Q Consensus       545 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d--------------~~g~tpL~~A~~~~~~~iv~~Ll~--  608 (758)
                      ...+..|..|+||||+|+..|+.++|++|+++|++++.++              ..|+||||+|+..|+.+++++|++  
T Consensus        84 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  163 (260)
T 3jxi_A           84 SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENG  163 (260)
T ss_dssp             CCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred             ccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            3445556799999999999999999999999999999999              689999999999999999999999  


Q ss_pred             -CCCCCCCCCCCCCcHHHHHHHCCC
Q 035705          609 -SGAKCDIENARNETALALARENGN  632 (758)
Q Consensus       609 -~gad~~~~d~~g~t~L~~A~~~~~  632 (758)
                       +|++++.+|..|+||||+|+..++
T Consensus       164 ~~ga~~~~~d~~g~TpLh~A~~~~~  188 (260)
T 3jxi_A          164 HKQADLRRQDSRGNTVLHALVAIAD  188 (260)
T ss_dssp             SCCCCTTCCCTTSCCHHHHHHHHCC
T ss_pred             ccCCCCcccCCCCCcHHHHHHHhcc
Confidence             999999999999999999998777

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=4.1e-30  Score=260.04  Aligned_cols=185  Identities=24%  Similarity=0.300  Sum_probs=169.5

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhcCCC--CcccCCCCCcHHHHHHHcCCHHHHHHHHhCCC-CCCcCCCCCCcHHHHHH--
Q 035705          454 FSPLMFVTQANDVDALKKLIEWADVD--LDEQDADGFSAAMIAAAAGHVEAFRLLLHAGA-NIKLQNKYGETAITLAE--  528 (758)
Q Consensus       454 ~t~L~~a~~~~~~~~v~~Ll~~~~~~--~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~--  528 (758)
                      .+++|.|+..++.+.++.+++. +.+  +|.+|..|.||||+|+..|+.+++++|++.|+ +++..+..|.||||+|+  
T Consensus        77 ~~~l~~a~~~~~~~~~~~l~~~-~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~  155 (276)
T 4hbd_A           77 RSDAHPELVRRHLVTFRAMSAR-LLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA  155 (276)
T ss_dssp             STTCCHHHHHHHHHHHHHHCHH-HHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGC
T ss_pred             ccCCCHHHHHHHHHHHHHHHHH-HHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHH
Confidence            3688999999999999999876 344  88999999999999999999999999999998 99999999999999999  


Q ss_pred             ---HcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHH
Q 035705          529 ---LNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQL  605 (758)
Q Consensus       529 ---~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~  605 (758)
                         ..++.++++.|+.. +...+..+..|+||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++
T Consensus       156 ~~~~~~~~~~v~~Ll~~-g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~  234 (276)
T 4hbd_A          156 TLKTQDDIETVLQLFRL-GNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGL  234 (276)
T ss_dssp             CCCSHHHHHHHHHHHHH-SCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             HhhhhhhHHHHHHHHHc-CCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHH
Confidence               66888899877654 56777788899999999999999999999999999999999999999999999999999999


Q ss_pred             HHh-CCCCCCCCCCCCCcHHHHHHHCCChhhHHHHH
Q 035705          606 LIS-SGAKCDIENARNETALALARENGNGNEAENVI  640 (758)
Q Consensus       606 Ll~-~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll  640 (758)
                      |++ .|+|++.+|..|+||||+|+..|+.++++.|+
T Consensus       235 Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll  270 (276)
T 4hbd_A          235 LLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLY  270 (276)
T ss_dssp             HHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            999 89999999999999999999999998666544

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=2.7e-29  Score=235.15  Aligned_cols=169  Identities=24%  Similarity=0.292  Sum_probs=111.6

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCh
Q 035705          454 FSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNG  533 (758)
Q Consensus       454 ~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  533 (758)
                      .||||.|+..|+.+++++|++..+..++.++..|.||||+|+..|+.+++++|+++|++++..                 
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-----------------   65 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL-----------------   65 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCC-----------------
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhh-----------------
Confidence            355555555555555555555532235555555555555555555555555555555555544                 


Q ss_pred             hHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCC
Q 035705          534 EVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKC  613 (758)
Q Consensus       534 ~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~  613 (758)
                                       +..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|+++
T Consensus        66 -----------------~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  128 (172)
T 3v30_A           66 -----------------AKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADL  128 (172)
T ss_dssp             -----------------CTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             -----------------cccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence                             445566677777777777778888888888888888888888888888888888888888888


Q ss_pred             CCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCccccccccCCCc
Q 035705          614 DIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHTKCGKGS  665 (758)
Q Consensus       614 ~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~~~~~d~~g~t~  665 (758)
                      +.+|..|+||||+|+..++.+         ++++|+++|+++..++..|.||
T Consensus       129 ~~~~~~g~t~l~~A~~~~~~~---------~~~~L~~~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          129 TTEADSGYTPMDLAVALGYRK---------VQQVIENHILKLFQSNLVPADP  171 (172)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHH---------HHHHHHHHHHHHSCC-------
T ss_pred             cccCCCCCCHHHHHHHhCcHH---------HHHHHHHHHHHHhcccCCCCCC
Confidence            888888888888888888775         5556777777777777777776

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=5.2e-29  Score=237.81  Aligned_cols=160  Identities=22%  Similarity=0.217  Sum_probs=135.7

Q ss_pred             CcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHH
Q 035705          480 LDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALH  559 (758)
Q Consensus       480 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~  559 (758)
                      +|.+|..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+.. +.+++..+..|.||||
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~  106 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSK-GSNVNTKDFSGKTPLM  106 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTSCCHHH
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHH
Confidence            456677777777777777777777777777777777777777888888777777777766644 5667777788889999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHH
Q 035705          560 RAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENV  639 (758)
Q Consensus       560 ~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~l  639 (758)
                      +|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|
T Consensus       107 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~L  186 (192)
T 2rfm_A          107 WSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIF  186 (192)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999866655


Q ss_pred             H
Q 035705          640 I  640 (758)
Q Consensus       640 l  640 (758)
                      +
T Consensus       187 l  187 (192)
T 2rfm_A          187 T  187 (192)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=2.9e-29  Score=234.97  Aligned_cols=169  Identities=21%  Similarity=0.319  Sum_probs=145.1

Q ss_pred             CCCHHHHHHhcccccchHHHHHHHHHcCCC-cccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHH
Q 035705          416 GQCANSIAKSSRWTLGFQQAVVDSIRSGNI-IQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIA  494 (758)
Q Consensus       416 g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~-~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A  494 (758)
                      +.||||.|+.    .+..++++.+++.+.. ++..+..|.||||+|+..|+.+++++|++. |++++..+..|.||||+|
T Consensus         2 ~~~~L~~A~~----~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A   76 (172)
T 3v30_A            2 DSLSIHQLAA----QGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW-GADPHILAKERESALSLA   76 (172)
T ss_dssp             --CCHHHHHH----TTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTCCCHHHHH
T ss_pred             chhhHHHHHH----cCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCchhhcccCCCHHHHH
Confidence            4689999954    4789999999999987 889999999999999999999999999998 899999999999999999


Q ss_pred             HHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHH
Q 035705          495 AAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLV  574 (758)
Q Consensus       495 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  574 (758)
                      +..|+.+++++|+++|++++.++..|.                                  ||||+|+..|+.+++++|+
T Consensus        77 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~----------------------------------t~L~~A~~~~~~~~v~~Ll  122 (172)
T 3v30_A           77 STGGYTDIVGLLLERDVDINIYDWNGG----------------------------------TPLLYAVRGNHVKCVEALL  122 (172)
T ss_dssp             HHTTCHHHHHHHHTTTCCTTCCCTTSC----------------------------------CHHHHHHHTTCHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHcCCCCCCCCCCCC----------------------------------CHHHHHHHcCCHHHHHHHH
Confidence            999999999999999999887665544                                  5566777778888888899


Q ss_pred             hcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcH
Q 035705          575 SRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETA  623 (758)
Q Consensus       575 ~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~  623 (758)
                      ++|++++.+|..|+||||+|+..++.+++++|+++|+++..++..|.||
T Consensus       123 ~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          123 ARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP  171 (172)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC-------
T ss_pred             HcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence            9999999999999999999999999999999999999988888888877

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.96  E-value=4.5e-32  Score=283.64  Aligned_cols=307  Identities=13%  Similarity=0.026  Sum_probs=144.2

Q ss_pred             cCcHHHHHHHHhCCCCCCcccccCcc-hhHHhh-hChHHHHHHHHhcCCCccccchHHHHHHHcCChhHHHHHHhccC--
Q 035705           99 AGNLTLVRKLLSLGANVNQKLFRGYA-TTAAVR-EDHLEILDLLIKAGACQEACEEALLETSYLGQARPAELLMATDL--  174 (758)
Q Consensus        99 ~g~~~iv~~Ll~~ga~~~~~~~~g~~-l~~A~~-~g~~~iv~~Ll~~ga~~~~~~~~l~~A~~~g~~~iv~~Ll~~~~--  174 (758)
                      .+..+.+..+++.+.+.+..  .+.+ +++|.. .++.+++++|+++|++.   .||||.|+..|+.+++++|++.+.  
T Consensus        44 ~~~~~~~~~~~~~~~~~~~~--~~ll~~~~a~~~~~~~~~~~~l~~~g~~~---~T~Lh~Aa~~G~~e~v~~Ll~~ga~~  118 (376)
T 2aja_A           44 LSYKEAIHIFLPGTKNMEQV--RQLLCLYYAHYNRNAKQLWSDAHKKGIKS---EVICFVAAITGCSSALDTLCLLLTSD  118 (376)
T ss_dssp             SCHHHHHHHCCCCSSHHHHH--HHHHHHHHHHTTTTCTTHHHHHHHHTCCH---HHHHHHHHHHCCHHHHHHHTTC--CC
T ss_pred             ccHHHHHHHHhcCCCCHHHH--HHHHHHHHHHhcCCCHHHHHHHHHcCCCc---CCHHHHHHHcCCHHHHHHHHHcCCcH
Confidence            44556666665544333211  1122 233433 35566666666666543   255555555555555555555443  


Q ss_pred             ----CCCCCCchHHHHHHhcCCHHHHHHHHhCCCCCCcchhhhhhccccccccCCCCchhHHHHhcCCHHHHHHHHHcCC
Q 035705          175 ----IRPQVSVHALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGV  250 (758)
Q Consensus       175 ----~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~d~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~ga  250 (758)
                          ..+..+.||||+|+..|+.++|++|+++|+++...+..           ..+.||||+|+..|+.++|++|+++|+
T Consensus       119 ~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~-----------~~~~TpLh~Aa~~G~~eiv~~Ll~~ga  187 (376)
T 2aja_A          119 EIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQ-----------AENYHAFRLAAENGHLHVLNRLCELAP  187 (376)
T ss_dssp             SSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHS-----------HHHHHHHHHHHHTTCHHHHHHHHHSCG
T ss_pred             HHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccC-----------CCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence                22233455666666666666666666666542211100           001456666666666666666666655


Q ss_pred             CCcc--ccccCccccccccchhhhhhccccccccccchhhhhhhchHHHHHHHhhccCCCCCCCCchHHHHHH-HcCCHH
Q 035705          251 KMDI--KVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAI-LCNNAR  327 (758)
Q Consensus       251 ~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~g~t~L~~A~-~~g~~~  327 (758)
                      +++.  .                                                      +..|.||||+|+ ..|+.+
T Consensus       188 ~~~~~~~------------------------------------------------------d~~g~TpL~~Aa~~~G~~e  213 (376)
T 2aja_A          188 TEATAMI------------------------------------------------------QAENYYAFRWAAVGRGHHN  213 (376)
T ss_dssp             GGHHHHH------------------------------------------------------HHHHHHHHHHHHSTTCCHH
T ss_pred             ccchhcc------------------------------------------------------CCCCCCHHHHHHHHCCCHH
Confidence            5443  2                                                      123445666666 666666


Q ss_pred             HHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCC
Q 035705          328 AVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGA  407 (758)
Q Consensus       328 ~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~  407 (758)
                      +|++|++.|+           .|.||||.|+..|+.+++++|+++|++++..+    ++++.|+..|+.++++..-.   
T Consensus       214 iv~~Ll~~ga-----------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~----~~l~~A~~~g~~~vv~~~~~---  275 (376)
T 2aja_A          214 VINFLLDCPV-----------MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMH----DAFKLSNPDGVFDLVTKSEC---  275 (376)
T ss_dssp             HHHHHTTSHH-----------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHH----TTTTTTSSSSCCCCSSHHHH---
T ss_pred             HHHHHHhCCC-----------ccchHHHHHHHCCCHHHHHHHHhcCccccccc----HHHHHHHHCCChhhhcHHhh---
Confidence            6666655442           14455666666666556666655555544322    23444554554442211000   


Q ss_pred             CCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhc--------CCC
Q 035705          408 DLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWA--------DVD  479 (758)
Q Consensus       408 ~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~--------~~~  479 (758)
                                            .....+++.++..+.                  .+..+.+++|++..        |++
T Consensus       276 ----------------------~~~~~~~~~li~~~~------------------~~~~~~~~~Ll~~~~vk~l~~~g~~  315 (376)
T 2aja_A          276 ----------------------LQGFYMLRNLIRRND------------------EVLLDDIRFLLSIPGIKALAPTATI  315 (376)
T ss_dssp             ----------------------HHHHHHHHHHHHHCC------------------GGGHHHHHHHHTSTTTGGGSSCCSS
T ss_pred             ----------------------hhhHHHHHHHHHcch------------------hhHHHHHHHHHhChhhhhhhccCCC
Confidence                                  000112333333331                  12245555655531        233


Q ss_pred             CcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHH
Q 035705          480 LDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVI  540 (758)
Q Consensus       480 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll  540 (758)
                      +    ..+.||||+|+..|+.+++++|++.|   ..++..++|++.+|-.+|..++.+.-+
T Consensus       316 ~----n~~~~~L~~A~~~g~~e~v~lLl~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~  369 (376)
T 2aja_A          316 P----GDANELLRLALRLGNQGACALLLSIP---SVLALTKANNYYINETGGRLDLRAVAL  369 (376)
T ss_dssp             T----TCCCHHHHHHHHHTCTTHHHHHTTSH---HHHHSCC--------------------
T ss_pred             C----CCccHHHHHHHHcCcHHHHHHHHcCh---HHHHHHHHhccccccccccccHHHHHH
Confidence            3    34568889998888889999888865   556778888888888888888776443

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=1.3e-28  Score=229.29  Aligned_cols=153  Identities=27%  Similarity=0.349  Sum_probs=106.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCC
Q 035705          453 RFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRN  532 (758)
Q Consensus       453 ~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  532 (758)
                      |.||||.|+..|+.+++++|++. +.+++.++..|.||||+|+..|+.+++++|+++|++++                  
T Consensus         3 ~~t~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------------------   63 (167)
T 3v31_A            3 NSLSVHQLAAQGEMLYLATRIEQ-ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ------------------   63 (167)
T ss_dssp             TCCCHHHHHHTTCHHHHHHHHHH-SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT------------------
T ss_pred             CcchHHHHHHCCCHHHHHHHHHc-CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC------------------
Confidence            44555555555555555555554 45555555555555555555555555555555555544                  


Q ss_pred             hhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCC
Q 035705          533 GEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAK  612 (758)
Q Consensus       533 ~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad  612 (758)
                                      ..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus        64 ----------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  127 (167)
T 3v31_A           64 ----------------LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD  127 (167)
T ss_dssp             ----------------CCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             ----------------CcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence                            4455666677777777888888888888888888888888888888888888888888888888


Q ss_pred             CCCCCCCCCcHHHHHHHCCChhhHHHHH
Q 035705          613 CDIENARNETALALARENGNGNEAENVI  640 (758)
Q Consensus       613 ~~~~d~~g~t~L~~A~~~~~~~~~~~ll  640 (758)
                      ++.+|..|+||||+|+..|+.+++++|+
T Consensus       128 ~~~~~~~g~t~l~~A~~~~~~~~~~~L~  155 (167)
T 3v31_A          128 PTIETDSGYNSMDLAVALGYRSVQQVIE  155 (167)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             CCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence            8888888888888888888887555443

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=1.2e-28  Score=228.23  Aligned_cols=156  Identities=33%  Similarity=0.456  Sum_probs=102.4

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCH
Q 035705          488 FSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDF  567 (758)
Q Consensus       488 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~  567 (758)
                      .||||.|+..|+.+++++|+++|++++..+..|.||||+|+. |+.+++++|+.. +.+++..+..|.||||+|+..|+.
T Consensus         6 ~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~   83 (162)
T 1ihb_A            6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLR-GANPDLKDRTGFAVIHDAARAGFL   83 (162)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             hhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCH
Confidence            355555555555555555555555555555555555555555 555555544432 445555555666777777777777


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCC-CCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHH
Q 035705          568 DLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAK-CDIENARNETALALARENGNGNEAENVILDELAL  646 (758)
Q Consensus       568 ~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad-~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~  646 (758)
                      +++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+         +++
T Consensus        84 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~---------~~~  154 (162)
T 1ihb_A           84 DTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNE---------VVS  154 (162)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHH---------HHH
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHH---------HHH
Confidence            777777777777777777777777777777777777777777776 4777777777777777777775         455


Q ss_pred             HHHhCCCc
Q 035705          647 TLVLDGTY  654 (758)
Q Consensus       647 ~L~~~g~~  654 (758)
                      +|+++|||
T Consensus       155 ~Ll~~GAd  162 (162)
T 1ihb_A          155 LMQANGAG  162 (162)
T ss_dssp             HHHHTC--
T ss_pred             HHHHhCCC
Confidence            66667664

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=3.5e-28  Score=226.67  Aligned_cols=151  Identities=32%  Similarity=0.447  Sum_probs=107.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcC
Q 035705          486 DGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRG  565 (758)
Q Consensus       486 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g  565 (758)
                      .+.++|+.|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+. .+.+++..+..|.||||+|+..|
T Consensus        13 ~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~   91 (169)
T 2y1l_E           13 DLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLK-NGADVNAVDHAGMTPLRLAALFG   91 (169)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             cccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcC
Confidence            33455555555555555555555555555555555555555555555555554443 24455555666777778888888


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHH
Q 035705          566 DFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAE  637 (758)
Q Consensus       566 ~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~  637 (758)
                      +.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|++++.+|..|+||||+|++.++.++++
T Consensus        92 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~  163 (169)
T 2y1l_E           92 HLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAE  163 (169)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHH
Confidence            888888888888888888888888888888888888888888888888888888888888888888886443

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=1.7e-28  Score=234.31  Aligned_cols=163  Identities=21%  Similarity=0.232  Sum_probs=156.3

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHH
Q 035705          446 IQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAIT  525 (758)
Q Consensus       446 ~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~  525 (758)
                      ++.++..|.||||+|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~  106 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVEN-FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLM  106 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHH-HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHH
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHh-ccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Confidence            567888999999999999999999999998 7999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHH
Q 035705          526 LAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQL  605 (758)
Q Consensus       526 ~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~  605 (758)
                      +|+..|+.+++++|+. .+.+++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++
T Consensus       107 ~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~  185 (192)
T 2rfm_A          107 WSIIFGYSEMSYFLLE-HGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKI  185 (192)
T ss_dssp             HHHHHTCHHHHHHHHH-TTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHH
Confidence            9999999999997775 588899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCC
Q 035705          606 LISSG  610 (758)
Q Consensus       606 Ll~~g  610 (758)
                      |+++|
T Consensus       186 Ll~~~  190 (192)
T 2rfm_A          186 FTEVR  190 (192)
T ss_dssp             HHHHH
T ss_pred             HHhcc
Confidence            99865

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=1.7e-28  Score=248.16  Aligned_cols=192  Identities=23%  Similarity=0.256  Sum_probs=124.5

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCC--CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCC-CCCCcccCCCCHHHHHHhcc-
Q 035705          352 RPIHLAARLGSAKILRRLISAGCN--INSRTAAGETAAMICARYKHEECLKFLASEGA-DLGLINYAGQCANSIAKSSR-  427 (758)
Q Consensus       352 t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~-~~~~~~~~g~t~l~~a~~~~-  427 (758)
                      +++|.|+..|+.+.++.+++.+.+  +|..|..|.||||+|+..|+.+++++|++.|+ +++..+..|.||+++|+... 
T Consensus        78 ~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~  157 (276)
T 4hbd_A           78 SDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATL  157 (276)
T ss_dssp             TTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCC
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHh
Confidence            355555666666666665555444  55566666666666666666666666666665 55656556665555554221 


Q ss_pred             cccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHH
Q 035705          428 WTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLL  507 (758)
Q Consensus       428 ~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  507 (758)
                      ...+..++++.|++.|...+..+..|.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|+
T Consensus       158 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~-gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll  236 (276)
T 4hbd_A          158 KTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLAC-EADVNVQDDDGSTALMCACEHGHKEIAGLLL  236 (276)
T ss_dssp             CSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
Confidence            123445555555555555555556666777777777777777777777 6777777777777777777777777777777


Q ss_pred             h-CCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhc
Q 035705          508 H-AGANIKLQNKYGETAITLAELNRNGEVLEQVILEYA  544 (758)
Q Consensus       508 ~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~  544 (758)
                      + .|++++.+|..|.||||+|+..|+.+++++|+.+.+
T Consensus       237 ~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  274 (276)
T 4hbd_A          237 AVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMN  274 (276)
T ss_dssp             TSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred             hcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence            7 677777777777777777777777777776666543

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=3.1e-28  Score=229.46  Aligned_cols=169  Identities=18%  Similarity=0.239  Sum_probs=158.2

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHc
Q 035705          451 ASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELN  530 (758)
Q Consensus       451 ~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  530 (758)
                      .++.++|+.|+..|+.+++++|++..+.+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   82 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH   82 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            34678999999999999999999998889999999999999999999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCC
Q 035705          531 RNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSG  610 (758)
Q Consensus       531 ~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~g  610 (758)
                      |+.+++++|+. .+.+++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+|||++|+..++.+++++|+++|
T Consensus        83 ~~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g  161 (179)
T 3f6q_A           83 GHRDIVQKLLQ-YKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMG  161 (179)
T ss_dssp             TCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence            99999997765 57889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCC
Q 035705          611 AKCDIENARN  620 (758)
Q Consensus       611 ad~~~~d~~g  620 (758)
                      ++++..+..+
T Consensus       162 ~~~~~~~~~~  171 (179)
T 3f6q_A          162 QNLNRIPYKD  171 (179)
T ss_dssp             CCCSCBCCCC
T ss_pred             cCcccCCccc
Confidence            9999877654

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=3.3e-31  Score=259.51  Aligned_cols=184  Identities=14%  Similarity=0.103  Sum_probs=167.6

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHc
Q 035705          451 ASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELN  530 (758)
Q Consensus       451 ~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  530 (758)
                      .++.||||.|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..
T Consensus        19 ~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~   97 (229)
T 2vge_A           19 LNPLVLLLDAALTGELEVVQQAVKE-MNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASC   97 (229)
T ss_dssp             SCHHHHHHHHHHHTCHHHHHHHHHH-SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             cchhHHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc
Confidence            4456899999999999999999998 899999999999999999999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHhhccccCCCC-CCCchHHHHH--HHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHH
Q 035705          531 RNGEVLEQVILEYALEEGQKG-SAGFYALHRA--AKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLI  607 (758)
Q Consensus       531 ~~~~~v~~ll~~~~~~~~~~~-~~g~t~L~~A--~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll  607 (758)
                      |+.+++++|+. .+.+++..+ ..|+||||+|  +..|+.+++++|+++|++++.+|..|.||++.++...   ..++|+
T Consensus        98 g~~~~v~~Ll~-~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~---~~~~ll  173 (229)
T 2vge_A           98 NDTVICMALVQ-HGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEF---GDELSF  173 (229)
T ss_dssp             TCHHHHHHHHT-TTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSS---TTBCCB
T ss_pred             CCHHHHHHHHH-cCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhcc---ccccCc
Confidence            99999997774 577788775 6999999999  9999999999999999999999999999999765544   336889


Q ss_pred             hCCCC--CCCCCCCCCcHHHHHHHCCChhhHHHH
Q 035705          608 SSGAK--CDIENARNETALALARENGNGNEAENV  639 (758)
Q Consensus       608 ~~gad--~~~~d~~g~t~L~~A~~~~~~~~~~~l  639 (758)
                      +.|++  ++.+|..|+||||+|++.|+.++++..
T Consensus       174 ~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~  207 (229)
T 2vge_A          174 REGESVTVLRRDGPEETDWWWAALHGQEGYVPRN  207 (229)
T ss_dssp             CTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGG
T ss_pred             cccccccccccCCCcccHHHHHHHcCCcceeehh
Confidence            99999  778999999999999999999987743

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=5.7e-28  Score=224.92  Aligned_cols=161  Identities=21%  Similarity=0.246  Sum_probs=143.6

Q ss_pred             CCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHH
Q 035705          415 AGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIA  494 (758)
Q Consensus       415 ~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A  494 (758)
                      .|.||||.|+.    .+..+++++|++.+.+++..+..|.||||+|+..|+.+++++|++. |++++..+..|.||||+|
T Consensus         2 ~~~t~L~~A~~----~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A   76 (167)
T 3v31_A            2 ANSLSVHQLAA----QGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN-GADPQLLGKGRESALSLA   76 (167)
T ss_dssp             TTCCCHHHHHH----TTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHH
T ss_pred             CCcchHHHHHH----CCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCcCCCCCcHHHHH
Confidence            58899999964    5789999999999999999999999999999999999999999998 899999999999999999


Q ss_pred             HHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHH
Q 035705          495 AAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLV  574 (758)
Q Consensus       495 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  574 (758)
                      +..|+.+++++|+++|++++.++..|.                                  ||||+|+..|+.+++++|+
T Consensus        77 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~----------------------------------t~L~~A~~~~~~~~v~~Ll  122 (167)
T 3v31_A           77 CSKGYTDIVKMLLDCGVDVNEYDWNGG----------------------------------TPLLYAVHGNHVKCVKMLL  122 (167)
T ss_dssp             HHHTCHHHHHHHHHHTCCTTCCCTTSC----------------------------------CHHHHHHHTTCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHCCCCCCcCCCCCC----------------------------------CHHHHHHHcCCHHHHHHHH
Confidence            999999999999999998877765544                                  5566667777788888888


Q ss_pred             hcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCC
Q 035705          575 SRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCD  614 (758)
Q Consensus       575 ~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~  614 (758)
                      ++|++++.+|..|+||||+|+..|+.+++++|+++++++.
T Consensus       123 ~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~  162 (167)
T 3v31_A          123 ESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLL  162 (167)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            8899999899999999999999999999999988876643

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.95  E-value=4.1e-28  Score=224.65  Aligned_cols=158  Identities=26%  Similarity=0.314  Sum_probs=148.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcC
Q 035705          452 SRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNR  531 (758)
Q Consensus       452 ~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  531 (758)
                      ...||||.|+..|+.+++++|++. +.+++.++..|.||||+|+. |+.+++++|+++|++++.++..|.||||+|+..|
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   81 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQN-NVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAG   81 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTS-CCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhC-CCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            345899999999999999999997 89999999999999999999 9999999999999999999999999999999999


Q ss_pred             ChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCC-CCCCCCCCCcHHHHHHHcCcHHHHHHHHhCC
Q 035705          532 NGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYD-VNASDADGYTPLMLAAKSGHGSVCQLLISSG  610 (758)
Q Consensus       532 ~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~g  610 (758)
                      +.+++++|+. .+.+++..|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|
T Consensus        82 ~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  160 (162)
T 1ihb_A           82 FLDTLQTLLE-FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  160 (162)
T ss_dssp             CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             CHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhC
Confidence            9999997775 5788999999999999999999999999999999998 6999999999999999999999999999999


Q ss_pred             CC
Q 035705          611 AK  612 (758)
Q Consensus       611 ad  612 (758)
                      ||
T Consensus       161 Ad  162 (162)
T 1ihb_A          161 AG  162 (162)
T ss_dssp             --
T ss_pred             CC
Confidence            86

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=2.7e-30  Score=253.09  Aligned_cols=193  Identities=17%  Similarity=0.107  Sum_probs=165.4

Q ss_pred             HHHHHHhcCCCCccc---CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhcc
Q 035705          469 LKKLIEWADVDLDEQ---DADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYAL  545 (758)
Q Consensus       469 v~~Ll~~~~~~~~~~---~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~  545 (758)
                      ++.|++. +.+++..   +..+.||||.|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+.. +.
T Consensus         1 v~~ll~~-~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-ga   78 (229)
T 2vge_A            1 MRSVLRK-AGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITA-GA   78 (229)
T ss_dssp             ----------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TC
T ss_pred             Ceehhcc-CCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CC
Confidence            3566666 5666544   45667889999999999999999999999999999999999999999999999977754 88


Q ss_pred             ccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCC-CCCCcHHHHH--HHcCcHHHHHHHHhCCCCCCCCCCCCCc
Q 035705          546 EEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASD-ADGYTPLMLA--AKSGHGSVCQLLISSGAKCDIENARNET  622 (758)
Q Consensus       546 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d-~~g~tpL~~A--~~~~~~~iv~~Ll~~gad~~~~d~~g~t  622 (758)
                      +++..|..|+||||+|+..|+.+++++|+++|++++.++ ..|+||||+|  +..|+.+++++|+++|++++.+|..|.|
T Consensus        79 ~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~  158 (229)
T 2vge_A           79 NVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVY  158 (229)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEE
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchH
Confidence            999999999999999999999999999999999999997 6999999999  9999999999999999999999999999


Q ss_pred             HHHHHHHCCChhhHHHHHHHHHHHHHHhCCCc--cccccccCCCcchHHHHHHhc
Q 035705          623 ALALARENGNGNEAENVILDELALTLVLDGTY--VKKHTKCGKGSPHVKLLKMWG  675 (758)
Q Consensus       623 ~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~--~~~~d~~g~t~l~~a~~~~~~  675 (758)
                      |++.++.....+            +|++.|++  ++.+|..|+||||+|+.....
T Consensus       159 ~l~~~~~~~~~~------------~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~  201 (229)
T 2vge_A          159 ALWDYSAEFGDE------------LSFREGESVTVLRRDGPEETDWWWAALHGQE  201 (229)
T ss_dssp             ESSCBCCSSTTB------------CCBCTTCEEEEEESSCTTCSSEEEEEETTEE
T ss_pred             HHHHHhhccccc------------cCccccccccccccCCCcccHHHHHHHcCCc
Confidence            999765554332            67788998  788999999999999765433

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.95  E-value=1.4e-27  Score=222.56  Aligned_cols=158  Identities=26%  Similarity=0.380  Sum_probs=150.0

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHc
Q 035705          451 ASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELN  530 (758)
Q Consensus       451 ~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  530 (758)
                      ..+.++|+.|++.|+.+++++|++. |++++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus        12 ~~~~~~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   90 (169)
T 2y1l_E           12 SDLGKKLLEAARAGRDDEVRILMAN-GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALF   90 (169)
T ss_dssp             -CHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CcccchHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence            4456899999999999999999998 899999999999999999999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCC
Q 035705          531 RNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSG  610 (758)
Q Consensus       531 ~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~g  610 (758)
                      |+.+++++|+. .+.+++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++.|
T Consensus        91 ~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E           91 GHLEIVEVLLK-NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             TCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             CCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            99999997765 57888999999999999999999999999999999999999999999999999999999999999987

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=4.1e-28  Score=228.66  Aligned_cols=169  Identities=21%  Similarity=0.224  Sum_probs=155.3

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhC-CCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHH
Q 035705          485 ADGFSAAMIAAAAGHVEAFRLLLHA-GANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK  563 (758)
Q Consensus       485 ~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~  563 (758)
                      .++.++|+.|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|+.. +.+++..+..|.||||+|+.
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~   81 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR-GARINVMNRGDDTPLHLAAS   81 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHH
Confidence            4578999999999999999999988 778999999999999999999999999977755 78899999999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHH
Q 035705          564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDE  643 (758)
Q Consensus       564 ~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~  643 (758)
                      .|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|++++.+|..|+|||++|+..++.+         
T Consensus        82 ~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~---------  152 (179)
T 3f6q_A           82 HGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLREL---------  152 (179)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHH---------
T ss_pred             cCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHH---------
Confidence            99999999999999999999999999999999999999999999999999999999999999999887764         


Q ss_pred             HHHHHHhCCCccccccccCC
Q 035705          644 LALTLVLDGTYVKKHTKCGK  663 (758)
Q Consensus       644 ~~~~L~~~g~~~~~~d~~g~  663 (758)
                      ++++|++.|++++..+..+.
T Consensus       153 ~~~~L~~~g~~~~~~~~~~~  172 (179)
T 3f6q_A          153 LRERAEKMGQNLNRIPYKDT  172 (179)
T ss_dssp             HHHHHHHTTCCCSCBCCCCT
T ss_pred             HHHHHHHhhcCcccCCcccc
Confidence            67799999999998877653

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.95  E-value=9.3e-28  Score=219.75  Aligned_cols=148  Identities=28%  Similarity=0.347  Sum_probs=109.8

Q ss_pred             cHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHH
Q 035705          489 SAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFD  568 (758)
Q Consensus       489 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~  568 (758)
                      |||+.|+..|+.+++++|++.|++++ .+..|.||||+|+..|+.+++++|+ +.+.+++..+..|+||||+|+..|+.+
T Consensus         4 ~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~   81 (153)
T 1awc_B            4 KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLL-RAGVSRDARTKVDRTPLHMAASEGHAN   81 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHH-TTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHcChHH
Confidence            45555555555555555555555443 3444555555555555555555444 234444555566777888888888999


Q ss_pred             HHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHH
Q 035705          569 LVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAEN  638 (758)
Q Consensus       569 ~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~  638 (758)
                      ++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++
T Consensus        82 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~  151 (153)
T 1awc_B           82 IVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEI  151 (153)
T ss_dssp             HHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999986654

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=2.4e-29  Score=248.94  Aligned_cols=204  Identities=15%  Similarity=0.117  Sum_probs=146.9

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHc
Q 035705          451 ASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELN  530 (758)
Q Consensus       451 ~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  530 (758)
                      ..|.||||.|+..++.+.++.|+++ |++++.. ..|.||||.|+..|+.+++++|++.|++++.+|..|.||||+|+..
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~-g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~   80 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAH-GMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA   80 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH
T ss_pred             ccccccCchhhhhhhHHHHHHHhcc-CCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            4578999999999999999999998 8898864 7789999999999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCC-cHHHHH--HHcCcHHHHHHHH
Q 035705          531 RNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGY-TPLMLA--AKSGHGSVCQLLI  607 (758)
Q Consensus       531 ~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~-tpL~~A--~~~~~~~iv~~Ll  607 (758)
                      |+.+++++|+. .+.+++..|..|+||||+|+..|+.+++++|+++|++++.++..|. ||||+|  +..|+.+++++|+
T Consensus        81 g~~~~v~~Ll~-~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll  159 (239)
T 1ycs_B           81 GHTEIVKFLVQ-FGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY  159 (239)
T ss_dssp             TCHHHHHHHHH-HTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHH
T ss_pred             CCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHH
Confidence            99999998775 5888999999999999999999999999999999999999998887 999999  7889999999999


Q ss_pred             hCCCCCCCC---------CCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCc------cccccccCCCcchH
Q 035705          608 SSGAKCDIE---------NARNETALALARENGNGNEAENVILDELALTLVLDGTY------VKKHTKCGKGSPHV  668 (758)
Q Consensus       608 ~~gad~~~~---------d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~------~~~~d~~g~t~l~~  668 (758)
                      ++|++++..         +..+.++++++...|..-           ..|.+.+.+      ....++.|.+|.+|
T Consensus       160 ~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~~i-----------~vl~~~~~~~~~Ww~~~~~~~~G~~P~~y  224 (239)
T 1ycs_B          160 GVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGDCM-----------TIIHREDEDEIEWWWARLNDKEGYVPRNL  224 (239)
T ss_dssp             HHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSCEE-----------EECCCCTTSCSSEEEEEETTEEEEEEGGG
T ss_pred             HhhhcccccccceEEEEeccCCCCCCcccccCCCEE-----------EEEEecCCCCCCEEEEEECCcEEEeehHH
Confidence            999998876         566889999888887631           233333433      23455667777665

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=1.4e-27  Score=221.78  Aligned_cols=160  Identities=25%  Similarity=0.305  Sum_probs=109.3

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHH
Q 035705          450 NASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAEL  529 (758)
Q Consensus       450 ~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  529 (758)
                      +.++.|||+.|+..|+.+++++|++..+.+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+.
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   84 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACS   84 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHH
Confidence            44566888888888888888888887677788888888888888888888888888888888888777777777666666


Q ss_pred             cCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhC
Q 035705          530 NRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISS  609 (758)
Q Consensus       530 ~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~  609 (758)
                      .|+.+++++|+. .+.+++..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+. ++.+++++|+++
T Consensus        85 ~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~  162 (165)
T 3twr_A           85 YGHYEVAELLVK-HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGD  162 (165)
T ss_dssp             TTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC
T ss_pred             cCcHHHHHHHHh-CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhc
Confidence            666666654443 345555555555566666666666666666666666655555556666655444 555566665555


Q ss_pred             CC
Q 035705          610 GA  611 (758)
Q Consensus       610 ga  611 (758)
                      ||
T Consensus       163 gA  164 (165)
T 3twr_A          163 AA  164 (165)
T ss_dssp             --
T ss_pred             cc
Confidence            54

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=2e-27  Score=220.79  Aligned_cols=160  Identities=26%  Similarity=0.336  Sum_probs=145.2

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHh-CCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHH
Q 035705          483 QDADGFSAAMIAAAAGHVEAFRLLLH-AGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRA  561 (758)
Q Consensus       483 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A  561 (758)
                      .+.+|.||||.|+..|+.++++.|++ .+.+++..+..|.||||+|+..|+.+++++|+. .+.+++..|..|+||||+|
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A   82 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ-HGADVHAKDKGGLVPLHNA   82 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHh-cCCCCCccCCCCCCHHHHH
Confidence            35678899999999999999999998 567888889999999999999999999997775 4788999999999999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHH
Q 035705          562 AKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVIL  641 (758)
Q Consensus       562 ~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~  641 (758)
                      +..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|++ ++.+       
T Consensus        83 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~-------  154 (165)
T 3twr_A           83 CSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTD-------  154 (165)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHH-------
T ss_pred             HHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChH-------
Confidence            99999999999999999999999999999999999999999999999999999999999999999877 7775       


Q ss_pred             HHHHHHHHhCCC
Q 035705          642 DELALTLVLDGT  653 (758)
Q Consensus       642 ~~~~~~L~~~g~  653 (758)
                        ++++|+++|+
T Consensus       155 --i~~~L~~~gA  164 (165)
T 3twr_A          155 --IQDLLRGDAA  164 (165)
T ss_dssp             --HHHHHHTC--
T ss_pred             --HHHHHhhccc
Confidence              5667777765

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.95  E-value=1.1e-26  Score=212.68  Aligned_cols=150  Identities=21%  Similarity=0.264  Sum_probs=143.0

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCh
Q 035705          454 FSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNG  533 (758)
Q Consensus       454 ~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  533 (758)
                      .|+|+.|+..|+.+++++|++. |.+++ .+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~-g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   80 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMAN-GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHH-TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHc-CCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChH
Confidence            4799999999999999999998 77776 588999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHH
Q 035705          534 EVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLL  606 (758)
Q Consensus       534 ~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~L  606 (758)
                      +++++|+. .+.+++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|
T Consensus        81 ~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           81 NIVEVLLK-HGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHT-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            99997775 5888999999999999999999999999999999999999999999999999999999999987

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.94  E-value=1.5e-26  Score=212.62  Aligned_cols=151  Identities=27%  Similarity=0.335  Sum_probs=104.7

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCh
Q 035705          454 FSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNG  533 (758)
Q Consensus       454 ~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  533 (758)
                      .||||.|+..|+.+++++|++..+.+++..+..|.||||+ +..|+.+++++|+++|++++.+|..|             
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g-------------   68 (156)
T 1bd8_A            3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSG-------------   68 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTS-------------
T ss_pred             chHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCC-------------
Confidence            3677777777777777777776445677777777777777 66777777777777777766655544             


Q ss_pred             hHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCC
Q 035705          534 EVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKC  613 (758)
Q Consensus       534 ~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~  613 (758)
                                           .||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++ +++
T Consensus        69 ---------------------~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~  126 (156)
T 1bd8_A           69 ---------------------TSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDL  126 (156)
T ss_dssp             ---------------------CCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCT
T ss_pred             ---------------------CCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCC
Confidence                                 4556666666666666667777777777777777777777777777777777776 777


Q ss_pred             CCCCCCCCcHHHHHHHCCChhhHHHHH
Q 035705          614 DIENARNETALALARENGNGNEAENVI  640 (758)
Q Consensus       614 ~~~d~~g~t~L~~A~~~~~~~~~~~ll  640 (758)
                      +.+|..|+||||+|+..|+.++++.|+
T Consensus       127 ~~~~~~g~t~l~~A~~~~~~~~v~~Ll  153 (156)
T 1bd8_A          127 HRRDARGLTPLELALQRGAQDLVDILQ  153 (156)
T ss_dssp             TCCCTTSCCHHHHHHHSCCHHHHHHHH
T ss_pred             CCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence            777777777777777777777666654

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.94  E-value=1.4e-26  Score=212.82  Aligned_cols=121  Identities=16%  Similarity=0.208  Sum_probs=110.5

Q ss_pred             CCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCc
Q 035705          520 GETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGH  599 (758)
Q Consensus       520 g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~  599 (758)
                      +.|||+.|+..|+.+++++|+...+.+++..+..|.||||+ +..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   80 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence            45778888888888888877777556777788889999999 99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHH
Q 035705          600 GSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVIL  641 (758)
Q Consensus       600 ~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~  641 (758)
                      .+++++|+++|++++.+|..|+||||+|+..|+.+++++|+.
T Consensus        81 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  122 (156)
T 1bd8_A           81 LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA  122 (156)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHh
Confidence            999999999999999999999999999999999999998874

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=8.2e-28  Score=237.89  Aligned_cols=167  Identities=22%  Similarity=0.225  Sum_probs=120.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHH
Q 035705          484 DADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK  563 (758)
Q Consensus       484 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~  563 (758)
                      +..|.||||.|+..++.++++.|+++|++++.. ..|.||||.|+..|+.++++.|+. .+.+++..|..|+||||+|+.
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~   79 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIY-EVDDPSLPNDEGITALHNAVC   79 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHTCHHHHHHHTS-TTSSCCCCCTTSCCHHHHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHH
Confidence            356899999999999999999999999999864 679999999999999999998775 455899999999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCC-cHHHHH--HHCCChhhHHHHH
Q 035705          564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNE-TALALA--RENGNGNEAENVI  640 (758)
Q Consensus       564 ~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~-t~L~~A--~~~~~~~~~~~ll  640 (758)
                      .|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|. ||||+|  +..|+.+      
T Consensus        80 ~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~------  153 (239)
T 1ycs_B           80 AGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQ------  153 (239)
T ss_dssp             HTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCC------
T ss_pred             cCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHH------
Confidence            9999999999999999999999999999999999999999999999999999998887 999999  7888887      


Q ss_pred             HHHHHHHHHhCCCcccccccc
Q 035705          641 LDELALTLVLDGTYVKKHTKC  661 (758)
Q Consensus       641 ~~~~~~~L~~~g~~~~~~d~~  661 (758)
                         ++++|+++|++++..+..
T Consensus       154 ---~~~~Ll~~~a~~~~~~~~  171 (239)
T 1ycs_B          154 ---CSQFLYGVQEKMGIMNKG  171 (239)
T ss_dssp             ---HHHHHHHHHHHTTTTGGG
T ss_pred             ---HHHHHHHhhhcccccccc
Confidence               555777788888877544

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.93  E-value=1.7e-26  Score=217.45  Aligned_cols=157  Identities=13%  Similarity=0.086  Sum_probs=135.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhcCCCCcccC-CCCCcHHHHHHHcCCH----HHHHHHHhCCCCCCcCCCCCCcHHHHH
Q 035705          453 RFSPLMFVTQANDVDALKKLIEWADVDLDEQD-ADGFSAAMIAAAAGHV----EAFRLLLHAGANIKLQNKYGETAITLA  527 (758)
Q Consensus       453 ~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A  527 (758)
                      ++++|+.|++.|+.+.++.+++.   +++..+ ..|+||||+|+.+++.    +++++|+++|++++.+|..|+||||+|
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~---~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a   82 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEK---GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPL   82 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHH---SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhc---CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence            35789999999999999999986   345555 7799999999999975    589999999999999999999999999


Q ss_pred             HHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCC-cHHHHHHHcC-----cHH
Q 035705          528 ELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGY-TPLMLAAKSG-----HGS  601 (758)
Q Consensus       528 ~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~-tpL~~A~~~~-----~~~  601 (758)
                      +..++.++..                            ..+++++|+++|+++|.+|..|+ ||||+|+..+     +.+
T Consensus        83 ~~~~~~~~~~----------------------------~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~  134 (186)
T 3t8k_A           83 FQGGGNDITG----------------------------TTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIP  134 (186)
T ss_dssp             HHHCTTCHHH----------------------------HHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHH
T ss_pred             HHcCCcchhh----------------------------HHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHH
Confidence            8877655432                            25899999999999999999999 9999999844     467


Q ss_pred             HHHHHHh-CCCCCCCCCCCCCcHHHHHHHCCChhhHHHHH
Q 035705          602 VCQLLIS-SGAKCDIENARNETALALARENGNGNEAENVI  640 (758)
Q Consensus       602 iv~~Ll~-~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll  640 (758)
                      ++++|++ +|+|++.+|..|+||||+|++.++.++++.|.
T Consensus       135 iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~  174 (186)
T 3t8k_A          135 LYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMME  174 (186)
T ss_dssp             HHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            9999999 99999999999999999999999998666443

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.93  E-value=5.8e-26  Score=208.43  Aligned_cols=145  Identities=28%  Similarity=0.280  Sum_probs=101.9

Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCch-HHH
Q 035705          481 DEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFY-ALH  559 (758)
Q Consensus       481 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t-~L~  559 (758)
                      +..+..|.||||+|+..|+.+++++|+++|++++..+..|+||||+|+ .|+.+++++|+. .+.+++..+..|.| |||
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~-~g~~~~~~d~~g~ttpL~   83 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLL-HGAEPNCADPATLTRPVH   83 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHT-TTCCCCCCCTTTCCCHHH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHH-cCCCCCCcCCCCCcHHHH
Confidence            344566677777777777777777777777777777777777777764 677777765554 35666777777887 999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHH
Q 035705          560 RAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALA  627 (758)
Q Consensus       560 ~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A  627 (758)
                      +|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||.+-+
T Consensus        84 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           84 DAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred             HHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999998744

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.93  E-value=1.3e-25  Score=200.69  Aligned_cols=134  Identities=26%  Similarity=0.334  Sum_probs=103.1

Q ss_pred             CCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCC-Cc
Q 035705          477 DVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSA-GF  555 (758)
Q Consensus       477 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~-g~  555 (758)
                      +.+++..+..|.||||+|+..|+.+++++|+++|++++.++..|+||||+|+. |+.+++++|+. .+.+++..+.. |+
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~-~g~~~~~~~~~~g~   79 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLL-HGAEPNCADPATLT   79 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHH-HTCCSSCCBTTTTB
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHH-CCCCCCCcCCCCCC
Confidence            46777778888888888888888888888888888888777777777777777 77777765554 45566666666 77


Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCC
Q 035705          556 YALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAK  612 (758)
Q Consensus       556 t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad  612 (758)
                      ||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|||
T Consensus        80 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           80 RPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            777777878888888888888888888888888888888888888888888887775

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.92  E-value=1.8e-25  Score=199.83  Aligned_cols=134  Identities=18%  Similarity=0.202  Sum_probs=125.8

Q ss_pred             CCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCC-CC
Q 035705          510 GANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDAD-GY  588 (758)
Q Consensus       510 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~-g~  588 (758)
                      +++++..+..|.||||+|+..|+.+++++|+.. +.+++..+..|+||||+|+. |+.+++++|+++|++++.+|.. |+
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~   79 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEA-GADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLT   79 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTB
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHc-CCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCC
Confidence            578899999999999999999999999988865 78899999999999999999 9999999999999999999999 99


Q ss_pred             cHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCc
Q 035705          589 TPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTY  654 (758)
Q Consensus       589 tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~  654 (758)
                      ||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+         ++++|+++|+|
T Consensus        80 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~---------~~~~Ll~~Gad  136 (136)
T 1d9s_A           80 RPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRD---------IARYLHAATGD  136 (136)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHH---------HHHHHHHHHCC
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHH---------HHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999986         55677777775

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.92  E-value=1.8e-25  Score=205.17  Aligned_cols=144  Identities=17%  Similarity=0.147  Sum_probs=118.3

Q ss_pred             CcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCc-HHH
Q 035705          514 KLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYT-PLM  592 (758)
Q Consensus       514 ~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t-pL~  592 (758)
                      +..+..|.||||+|+..|+.+++++|+.. +.+++..+..|+||||+|+ .|+.+++++|+++|++++.+|..|+| |||
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~   83 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEA-GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVH   83 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTT-TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHH
Confidence            44577899999999999999999988865 7889999999999999986 89999999999999999999999999 999


Q ss_pred             HHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCccccccccCCCcchH
Q 035705          593 LAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHTKCGKGSPHV  668 (758)
Q Consensus       593 ~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~~~~~d~~g~t~l~~  668 (758)
                      +|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+         ++++|+++|++++.+|..|.||.+.
T Consensus        84 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~---------~v~~Ll~~ga~~~~~~~~g~t~~~~  150 (156)
T 1bi7_B           84 DAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRD---------VARYLRAAAGGTRGSNHARIDAAEG  150 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHH---------HHHHHSSCC----------------
T ss_pred             HHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHH---------HHHHHHHcCCCCCccCcCcCccccc
Confidence            999999999999999999999999999999999999999986         6778999999999999999998764

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.91  E-value=2.4e-24  Score=202.66  Aligned_cols=156  Identities=17%  Similarity=0.072  Sum_probs=116.8

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHccCCCCCCcccCC-CCCCcHHHHHHHcCCH----HHHHHHHHcCCCCCCCCCCCCcHH
Q 035705          313 GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYS-KTELRPIHLAARLGSA----KILRRLISAGCNINSRTAAGETAA  387 (758)
Q Consensus       313 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~-~~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~L  387 (758)
                      +.++|+.|+..|+.+.++.+++.+.+.      .+ ..|+||||+|+..|+.    +++++|+++|+++|.+|..|+|||
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~------~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL   79 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYED------KESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLF   79 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSSC------HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCccc------ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHH
Confidence            468999999999999999999876432      33 6799999999999975    599999999999999999999999


Q ss_pred             HHHHHcCC------HHHHHHHHHCCCCCCCcccCCC-CHHHHHHhcccc-cchHHHHHHHHH-cCCCcccCCCCCCcHHH
Q 035705          388 MICARYKH------EECLKFLASEGADLGLINYAGQ-CANSIAKSSRWT-LGFQQAVVDSIR-SGNIIQSSNASRFSPLM  458 (758)
Q Consensus       388 ~~A~~~g~------~~iv~~Ll~~g~~~~~~~~~g~-t~l~~a~~~~~~-~~~~~~~~~ll~-~g~~~~~~~~~~~t~L~  458 (758)
                      |+|+..++      .+++++|+++|++++.+|..|. ||||+|+..... .+..+++++|++ .|++++..|..|.||||
T Consensus        80 h~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~  159 (186)
T 3t8k_A           80 FPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALE  159 (186)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHH
T ss_pred             HHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHH
Confidence            99999887      6789999999999999999998 888888653221 233344444444 44444444444444444


Q ss_pred             HHHHcCCHHHHHHHHH
Q 035705          459 FVTQANDVDALKKLIE  474 (758)
Q Consensus       459 ~a~~~~~~~~v~~Ll~  474 (758)
                      +|++.++.+++++|.+
T Consensus       160 ~A~~~~~~~~v~~L~~  175 (186)
T 3t8k_A          160 FVKRCQKPIALKMMED  175 (186)
T ss_dssp             HHHTTTCHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHH
Confidence            4444444444444444

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.90  E-value=4e-23  Score=181.96  Aligned_cols=125  Identities=38%  Similarity=0.561  Sum_probs=83.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCC
Q 035705          487 GFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGD  566 (758)
Q Consensus       487 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~  566 (758)
                      |.||||.|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+. .+.+++..+..|.||||+|+..|+
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~   80 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGH   80 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHH-cCCCCcccCCCCCcHHHHHHHcCh
Confidence            4555555555555555555555555555555555555555555555555544332 234444555566677777777788


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCC
Q 035705          567 FDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAK  612 (758)
Q Consensus       567 ~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad  612 (758)
                      .+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|||
T Consensus        81 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           81 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            8888888888888888888888888888888888888888888875

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.90  E-value=2.9e-23  Score=185.39  Aligned_cols=125  Identities=26%  Similarity=0.384  Sum_probs=69.7

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHc
Q 035705          485 ADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKR  564 (758)
Q Consensus       485 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~  564 (758)
                      ..+.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+. .+.+++..|..|.||||+|+..
T Consensus        12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~   90 (136)
T 2jab_A           12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLK-NGADVNAVDAIGFTPLHLAAFI   90 (136)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHH
T ss_pred             ccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCCCCCHHHHHHHc
Confidence            345566666666666666666666666666665555555444444444444443332 2333344444455555555555


Q ss_pred             CCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCC
Q 035705          565 GDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSG  610 (758)
Q Consensus       565 g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~g  610 (758)
                      |+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|
T Consensus        91 ~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           91 GHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            5555555666666666656656666666666666666666665554

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.89  E-value=8.8e-23  Score=179.74  Aligned_cols=126  Identities=35%  Similarity=0.506  Sum_probs=118.5

Q ss_pred             CCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcC
Q 035705          519 YGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSG  598 (758)
Q Consensus       519 ~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~  598 (758)
                      +|+||||+|+..|+.+++++|+.. +.+++..+..|.||||+|+..++.+++++|+++|++++.+|..|+||||+|+..+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~   79 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG   79 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC
Confidence            489999999999999999988864 6788889999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCc
Q 035705          599 HGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTY  654 (758)
Q Consensus       599 ~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~  654 (758)
                      +.+++++|+++|++++.+|..|+||||+|+..++.+         ++++|+++|+|
T Consensus        80 ~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~---------~~~~Ll~~Gad  126 (126)
T 1n0r_A           80 HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE---------VVKLLLEAGAY  126 (126)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH---------HHHHHHHHTCC
T ss_pred             hHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHH---------HHHHHHHcCCC
Confidence            999999999999999999999999999999999986         56677888875

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.89  E-value=6.2e-23  Score=183.26  Aligned_cols=120  Identities=28%  Similarity=0.372  Sum_probs=113.0

Q ss_pred             CCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH
Q 035705          517 NKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAK  596 (758)
Q Consensus       517 ~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~  596 (758)
                      ...+.||||+|+..|+.+++++|+.. +.+++..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~   89 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMAN-GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAF   89 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence            45688999999999999999988765 78889999999999999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHH
Q 035705          597 SGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAE  637 (758)
Q Consensus       597 ~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~  637 (758)
                      .|+.+++++|+++|++++.+|..|+||||+|+..++.++++
T Consensus        90 ~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~  130 (136)
T 2jab_A           90 IGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAE  130 (136)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             cCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHH
Confidence            99999999999999999999999999999999999997554

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.89  E-value=1.7e-23  Score=187.26  Aligned_cols=123  Identities=25%  Similarity=0.360  Sum_probs=91.2

Q ss_pred             CCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchH
Q 035705          478 VDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYA  557 (758)
Q Consensus       478 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~  557 (758)
                      +|+ .+|..|.||||+|+..|+.+++++|++.|++++.++                                  ..|+||
T Consensus         2 ~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~----------------------------------~~g~t~   46 (137)
T 3c5r_A            2 IDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKD----------------------------------HAGWTP   46 (137)
T ss_dssp             --C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC----------------------------------TTSCCH
T ss_pred             CCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCC----------------------------------CCCCCH
Confidence            344 455566666666666666666666666665555444                                  456666


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhh
Q 035705          558 LHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNE  635 (758)
Q Consensus       558 L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~  635 (758)
                      ||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|++++.+|..|+||||+|+..+..++
T Consensus        47 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~  124 (137)
T 3c5r_A           47 LHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSL  124 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHH
Confidence            777777788888888888888888888888888888888888888888888888888888888888888887666553

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.88  E-value=3.8e-23  Score=185.06  Aligned_cols=134  Identities=23%  Similarity=0.244  Sum_probs=112.0

Q ss_pred             CCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCc
Q 035705          443 GNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGET  522 (758)
Q Consensus       443 g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t  522 (758)
                      |+++ .++..|.||||+|+..|+.+++++|++. |++++.++..|.||||+|+..|+.+++++|+++|++++.++..   
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~---   75 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQN-GSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQ---   75 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGG---
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCC---
Confidence            4566 6789999999999999999999999998 8999999999999999999999999999999999998777654   


Q ss_pred             HHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHH
Q 035705          523 AITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSV  602 (758)
Q Consensus       523 ~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~i  602 (758)
                                                     |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..+..++
T Consensus        76 -------------------------------g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~  124 (137)
T 3c5r_A           76 -------------------------------NDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSL  124 (137)
T ss_dssp             -------------------------------GCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHH
T ss_pred             -------------------------------CCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHH
Confidence                                           4566777777778888888888899999999999999999988888888


Q ss_pred             HHHHHhCCCC
Q 035705          603 CQLLISSGAK  612 (758)
Q Consensus       603 v~~Ll~~gad  612 (758)
                      +++|.+.+..
T Consensus       125 l~~l~~~~~s  134 (137)
T 3c5r_A          125 LLLPEKNESS  134 (137)
T ss_dssp             HSCC------
T ss_pred             HhhccccccC
Confidence            8887776543

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.87  E-value=3.7e-22  Score=174.79  Aligned_cols=109  Identities=25%  Similarity=0.237  Sum_probs=76.9

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCC
Q 035705          552 SAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENG  631 (758)
Q Consensus       552 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~  631 (758)
                      ..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..++.+++++|+++|++++.+|..|+||||+|+..+
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~   84 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEG   84 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC
Confidence            45667777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             ChhhHHHHHHHHHHHHHHhCCCccccccccCCCcchHH
Q 035705          632 NGNEAENVILDELALTLVLDGTYVKKHTKCGKGSPHVK  669 (758)
Q Consensus       632 ~~~~~~~ll~~~~~~~L~~~g~~~~~~d~~g~t~l~~a  669 (758)
                      +.+         ++++|+++|++++.+|..|+||+|+|
T Consensus        85 ~~~---------~v~~Ll~~ga~~~~~~~~g~t~l~~A  113 (123)
T 3aaa_C           85 HVS---------CVKLLLSKGADKTVKGPDGLTAFEAT  113 (123)
T ss_dssp             CHH---------HHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred             CHH---------HHHHHHHcCCCCCCcCCCCCCHHHHh
Confidence            664         45566667777777777777777765

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.87  E-value=6.4e-23  Score=200.41  Aligned_cols=138  Identities=21%  Similarity=0.205  Sum_probs=107.7

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHH
Q 035705          483 QDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAA  562 (758)
Q Consensus       483 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~  562 (758)
                      .+..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+...+.+++..|..|+||||+|+
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~  148 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAA  148 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHH
T ss_pred             cccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHH
Confidence            35678899999999999999999999999999888888888888888888888887777768888888888889999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCC
Q 035705          563 KRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARN  620 (758)
Q Consensus       563 ~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g  620 (758)
                      ..|+.+++++|+++|++++.+|..|+||||+|+..++.++++.|++.|++.+..+.+|
T Consensus       149 ~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~  206 (222)
T 3ehr_A          149 WKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED  206 (222)
T ss_dssp             HHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred             HcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence            9999999999999999999999999999999999999999999999998887776554

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.87  E-value=1.2e-23  Score=198.59  Aligned_cols=132  Identities=20%  Similarity=0.201  Sum_probs=79.2

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCC-CCCchHHHHHHH
Q 035705          485 ADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKG-SAGFYALHRAAK  563 (758)
Q Consensus       485 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~-~~g~t~L~~A~~  563 (758)
                      ..|.||||.|+..|+.+++++|++ |++++.+|..|+||||+|+..|+.+++++|+. .+.+++..+ ..|+||||+|+.
T Consensus        42 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~~g~tpL~~A~~  119 (183)
T 3deo_A           42 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAE-AGADLDHRDMRGGLTALHMAAG  119 (183)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCSSSSCCHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCCCCCCHHHHHHh
Confidence            355667777777777777776666 66666666666666666666666666654443 345555554 556666666666


Q ss_pred             cCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhh
Q 035705          564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNE  635 (758)
Q Consensus       564 ~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~  635 (758)
                      .|+.+++++|+++|++++.+|..|+||||+|+..++.                 ..+.+||++|+..|..++
T Consensus       120 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~~~~~~~i  174 (183)
T 3deo_A          120 YVRPEVVEALVELGADIEVEDERGLTALELAREILKT-----------------TPKGNPMQFGRRIGLEKV  174 (183)
T ss_dssp             TTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT-----------------CCCCSHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC-----------------cccccHHHHHHHcCHHHH
Confidence            6666666666666666666666666666666543222                 234556666666655543

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.87  E-value=3.2e-22  Score=203.87  Aligned_cols=139  Identities=19%  Similarity=0.077  Sum_probs=105.1

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhCCCCCCc------CCCCCCcHHHHHHHc---CChhHHHHHHHhhccccCCCCCCCchHH
Q 035705          488 FSAAMIAAAAGHVEAFRLLLHAGANIKL------QNKYGETAITLAELN---RNGEVLEQVILEYALEEGQKGSAGFYAL  558 (758)
Q Consensus       488 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~------~~~~g~t~L~~A~~~---~~~~~v~~ll~~~~~~~~~~~~~g~t~L  558 (758)
                      .++|+.|+..|+.+.++.|++.|++++.      .+..|.||||+|+..   ++.+++++|+.. +.+++..|..|+|||
T Consensus       152 ~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gadvn~~d~~G~TpL  230 (301)
T 2b0o_E          152 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GGHLDAKAADGNTAL  230 (301)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH-SSCTTCCCTTCCCHH
T ss_pred             HHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc-CCCCCCCCCCCCCHH
Confidence            3556666666666666666666666665      466666777777665   666666655544 556666777888889


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCh
Q 035705          559 HRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNG  633 (758)
Q Consensus       559 ~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~  633 (758)
                      |+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|++      .|.||||+|++.|+.
T Consensus       231 h~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          231 HYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence            999999999999999999999999999999999999999999999999999987      578999999998864

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.86  E-value=4.2e-22  Score=174.45  Aligned_cols=110  Identities=26%  Similarity=0.346  Sum_probs=88.6

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHc
Q 035705          485 ADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKR  564 (758)
Q Consensus       485 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~  564 (758)
                      ..|.||||+|+..|+.+++++|++.|++++.+                                  |..|+||||+|+..
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~----------------------------------~~~g~t~L~~A~~~   50 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRT----------------------------------LEGGRKPLHYAADC   50 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHHHTTCCTTSC----------------------------------CTTSSCHHHHHHHT
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCcCcc----------------------------------CCCCCcHHHHHHHc
Confidence            34556666666666666666666655555544                                  44566778888888


Q ss_pred             CCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q 035705          565 GDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALAR  628 (758)
Q Consensus       565 g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~  628 (758)
                      |+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|++++.+|..|+||||+|.
T Consensus        51 ~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           51 GQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATD  114 (123)
T ss_dssp             TCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC
T ss_pred             CCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhC
Confidence            8899999999999999999999999999999999999999999999999999999999999994

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.86  E-value=1.1e-21  Score=199.99  Aligned_cols=139  Identities=23%  Similarity=0.150  Sum_probs=120.6

Q ss_pred             CCcHHHHHHHcCChhHHHHHHHhhccccCC------CCCCCchHHHHHHHc---CCHHHHHHHHhcCCCCCCCCCCCCcH
Q 035705          520 GETAITLAELNRNGEVLEQVILEYALEEGQ------KGSAGFYALHRAAKR---GDFDLVHTLVSRCYDVNASDADGYTP  590 (758)
Q Consensus       520 g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~------~~~~g~t~L~~A~~~---g~~~~v~~Ll~~ga~~n~~d~~g~tp  590 (758)
                      ..++|+.|+..|+.+.++.|+ ..+.+++.      .+..|.||||+|+..   |+.+++++|+++|+++|.+|..|+||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll-~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~Tp  229 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAF-ANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA  229 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHH-HTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCH
T ss_pred             hHHHHhhhhhccCHHHHHHHH-hcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCH
Confidence            457899999999999999887 55667776      688999999999997   89999999999999999999999999


Q ss_pred             HHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCccccccccCCCcchHHH
Q 035705          591 LMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHTKCGKGSPHVKL  670 (758)
Q Consensus       591 L~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~~~~~d~~g~t~l~~a~  670 (758)
                      ||+|+..|+.+++++|+++|+|++.+|..|+||||+|+..++.+         ++++|+++|++      .|.||||+|+
T Consensus       230 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~---------iv~~Ll~~ga~------~g~tpLh~A~  294 (301)
T 2b0o_E          230 LHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKE---------CEELLEQAQAG------TFAFPLHVDY  294 (301)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHH---------HHHHHHHHHHH------TTSSCCC---
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHH---------HHHHHHHhcCC------CCCChhHHHH
Confidence            99999999999999999999999999999999999999999997         45566777765      6899999998


Q ss_pred             HHHh
Q 035705          671 LKMW  674 (758)
Q Consensus       671 ~~~~  674 (758)
                      ...+
T Consensus       295 ~~g~  298 (301)
T 2b0o_E          295 SWVI  298 (301)
T ss_dssp             ----
T ss_pred             hcCC
Confidence            6543

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.86  E-value=2.8e-21  Score=191.23  Aligned_cols=139  Identities=23%  Similarity=0.256  Sum_probs=117.8

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHH
Q 035705          311 HNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRT-AAGETAAMI  389 (758)
Q Consensus       311 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~  389 (758)
                      ..|.||||.|+..|+.+++++|++ |++++.    .+..|.||||+|+..|+.+++++|+++|++++.++ ..|.||||+
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~----~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~  117 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRDVDA----VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM  117 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTC----BCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCC----cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHH
Confidence            468899999999999999999999 888776    78899999999999999999999999999999998 789999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHH
Q 035705          390 CARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDAL  469 (758)
Q Consensus       390 A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v  469 (758)
                      |+..|+.+++++|+++|++++.+|..|.||+|+|+...                     ....+.|||++|+..|+.+++
T Consensus       118 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~---------------------~~~~~~~~l~~a~~~g~~~iv  176 (244)
T 3ui2_A          118 AAGYVRPEVVEALVELGADIEVEDERGLTALELAREIL---------------------KTTPKGNPMQFGRRIGLEKVI  176 (244)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHH---------------------TTCCCSSHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHH---------------------hccCCCCHHHHHHHcChHHHH
Confidence            99999999999999999999999999998888885321                     113344566666666666666


Q ss_pred             HHHHHh
Q 035705          470 KKLIEW  475 (758)
Q Consensus       470 ~~Ll~~  475 (758)
                      ++|++.
T Consensus       177 ~~L~~~  182 (244)
T 3ui2_A          177 NVLEGQ  182 (244)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            655554

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.85  E-value=2.8e-21  Score=182.29  Aligned_cols=139  Identities=23%  Similarity=0.267  Sum_probs=118.8

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHH
Q 035705          310 LHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRT-AAGETAAM  388 (758)
Q Consensus       310 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~  388 (758)
                      +..|.||||.|+..|+.+++++|++ |++++.    .+..|.||||+|+..|+.+++++|+++|++++.++ ..|.||||
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~----~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~  115 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDA----VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALH  115 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTC----CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCC----cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHH
Confidence            3468899999999999999999999 888776    78899999999999999999999999999999998 88999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHH
Q 035705          389 ICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDA  468 (758)
Q Consensus       389 ~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~  468 (758)
                      +|+..|+.+++++|+++|++++.+|..|.||+|+|+...                     ....+.++|++|+..|..++
T Consensus       116 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~---------------------~~~~~~~~l~~a~~~~~~~i  174 (183)
T 3deo_A          116 MAAGYVRPEVVEALVELGADIEVEDERGLTALELAREIL---------------------KTTPKGNPMQFGRRIGLEKV  174 (183)
T ss_dssp             HHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHH---------------------HTCCCCSHHHHHHHHHHHHH
T ss_pred             HHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhc---------------------cCcccccHHHHHHHcCHHHH
Confidence            999999999999999999999999999999888885421                     01233456666666666666


Q ss_pred             HHHHHH
Q 035705          469 LKKLIE  474 (758)
Q Consensus       469 v~~Ll~  474 (758)
                      +++|.+
T Consensus       175 ~~~L~~  180 (183)
T 3deo_A          175 INVLEG  180 (183)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
Confidence            666654

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.85  E-value=5.6e-22  Score=193.70  Aligned_cols=139  Identities=22%  Similarity=0.183  Sum_probs=113.6

Q ss_pred             CCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCcHHHHH
Q 035705          516 QNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSR-CYDVNASDADGYTPLMLA  594 (758)
Q Consensus       516 ~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~n~~d~~g~tpL~~A  594 (758)
                      .+..|.||||+|+..|+.++++.|+. .+.+++..|..|+||||+|+..|+.+++++|+++ |+++|.+|..|+||||+|
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A  147 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLD-NRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAA  147 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHH
T ss_pred             cccccccccccccccCcHHHHHHHHh-CCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHH
Confidence            46678999999999999999998876 6788999999999999999999999999999999 999999999999999999


Q ss_pred             HHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCccccccccCCC
Q 035705          595 AKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHTKCGKG  664 (758)
Q Consensus       595 ~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~~~~~d~~g~t  664 (758)
                      +..|+.+++++|+++|++++.+|..|+||||+|+..+..+         +++.|+..|++.+..+..|+.
T Consensus       148 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~---------~l~~l~~~~~~~~~~~~~~~l  208 (222)
T 3ehr_A          148 AWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACAS---------LLKKKQGTDAVRTLSNAEDYL  208 (222)
T ss_dssp             HHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHH---------HHC------------------
T ss_pred             HHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHH---------HHHHHhccchhhhccchhhhc
Confidence            9999999999999999999999999999999999887775         566778888888777766543

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.85  E-value=5.6e-21  Score=192.35  Aligned_cols=192  Identities=15%  Similarity=0.073  Sum_probs=132.3

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcc-cCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCCcCCCCCCcHHHH
Q 035705          449 SNASRFSPLMFVTQANDVDALKKLIEWADVDLDE-QDADGFSAAMIAAAAGHVEAFRLLLHA-GANIKLQNKYGETAITL  526 (758)
Q Consensus       449 ~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~  526 (758)
                      .|..+.++++.+...|+..+.+++..... .... +...+....+    ....-..+++... ............++|+.
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~-~~~~~kP~~~s~~~~----~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~  136 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLP-SEDPVKPNPGSDMIA----RKDYITAKYMERRYARKKHADTAAKLHSLCE  136 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCC-SSSCCSCCTTCCHHH----HHHHHHHHHTTCTTSCCCSSSHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCC-hhhcCCCCCCCCHHH----HHHHHHHHHHHhhcccccccccchhhhhhhh
Confidence            45666778888888777766655433211 1110 0011111111    1111112232221 11111122223467788


Q ss_pred             HHHcCChhHHHHHHHhhccc-----cCCCCCCCchHHHHHHHc---CCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcC
Q 035705          527 AELNRNGEVLEQVILEYALE-----EGQKGSAGFYALHRAAKR---GDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSG  598 (758)
Q Consensus       527 A~~~~~~~~v~~ll~~~~~~-----~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~  598 (758)
                      |+..|+.+.+..++......     ++..+..|+||||+|+..   |+.+++++|+++|+++|.+|..|+||||+|+..|
T Consensus       137 a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g  216 (278)
T 1dcq_A          137 AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTD  216 (278)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTT
T ss_pred             HhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcC
Confidence            88888888777666543321     344578899999999999   8999999999999999999999999999999999


Q ss_pred             cHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCc
Q 035705          599 HGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTY  654 (758)
Q Consensus       599 ~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~  654 (758)
                      +.+++++|+++|+|++.+|..|+||||+|+..|+.+         ++++|+++|++
T Consensus       217 ~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~---------~v~~Ll~~ga~  263 (278)
T 1dcq_A          217 NAECLKLLLRGKASIEIANESGETPLDIAKRLKHEH---------CEELLTQALSG  263 (278)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH---------HHHHHHHHHTT
T ss_pred             CHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHH---------HHHHHHHcCCC
Confidence            999999999999999999999999999999999987         55577777764

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.85  E-value=2e-21  Score=192.32  Aligned_cols=136  Identities=28%  Similarity=0.351  Sum_probs=84.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCC
Q 035705          453 RFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRN  532 (758)
Q Consensus       453 ~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  532 (758)
                      |.||||.|+..|+.+++++|++  +++++.+|..|.||||+|+..|+.++|++|+++|++++.++.              
T Consensus        45 g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~--------------  108 (244)
T 3ui2_A           45 YETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDM--------------  108 (244)
T ss_dssp             HHHHHHHHHTTTCHHHHHHTTT--TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCS--------------
T ss_pred             CCCHHHHHHHcCCHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCC--------------
Confidence            4455555566666666655555  455555555556666666665666666666555555555441              


Q ss_pred             hhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCC
Q 035705          533 GEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAK  612 (758)
Q Consensus       533 ~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad  612 (758)
                                         ..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.            
T Consensus       109 -------------------~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~------------  157 (244)
T 3ui2_A          109 -------------------RGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT------------  157 (244)
T ss_dssp             -------------------SSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTT------------
T ss_pred             -------------------CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhc------------
Confidence                               3456666666666777777777777777777777777777777652221            


Q ss_pred             CCCCCCCCCcHHHHHHHCCChhhHHHHH
Q 035705          613 CDIENARNETALALARENGNGNEAENVI  640 (758)
Q Consensus       613 ~~~~d~~g~t~L~~A~~~~~~~~~~~ll  640 (758)
                           ..+.||||+|+..|+.++++.|+
T Consensus       158 -----~~~~~~l~~a~~~g~~~iv~~L~  180 (244)
T 3ui2_A          158 -----TPKGNPMQFGRRIGLEKVINVLE  180 (244)
T ss_dssp             -----CCCSSHHHHHHHHHHHHHHHHHH
T ss_pred             -----cCCCCHHHHHHHcChHHHHHHHH
Confidence                 34567777777777777666554

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.84  E-value=9.4e-21  Score=156.45  Aligned_cols=93  Identities=39%  Similarity=0.582  Sum_probs=85.3

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCC
Q 035705          553 AGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGN  632 (758)
Q Consensus       553 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~  632 (758)
                      +|+||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..++.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~   80 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhCCCc
Q 035705          633 GNEAENVILDELALTLVLDGTY  654 (758)
Q Consensus       633 ~~~~~~ll~~~~~~~L~~~g~~  654 (758)
                      .+         ++++|+++|++
T Consensus        81 ~~---------~~~~Ll~~ga~   93 (93)
T 1n0q_A           81 LE---------VVKLLLEAGAY   93 (93)
T ss_dssp             HH---------HHHHHHHTTCC
T ss_pred             HH---------HHHHHHHcCCC
Confidence            86         56677888875

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.83  E-value=1e-19  Score=183.10  Aligned_cols=124  Identities=16%  Similarity=0.173  Sum_probs=88.5

Q ss_pred             cHHHHHHHcCCHHHHHHHHhCCCCCC------cCCCCCCcHHHHHHHc---CChhHHHHHHHhhccccCCCCCCCchHHH
Q 035705          489 SAAMIAAAAGHVEAFRLLLHAGANIK------LQNKYGETAITLAELN---RNGEVLEQVILEYALEEGQKGSAGFYALH  559 (758)
Q Consensus       489 t~L~~A~~~g~~~~v~~Ll~~g~~~~------~~~~~g~t~L~~A~~~---~~~~~v~~ll~~~~~~~~~~~~~g~t~L~  559 (758)
                      ++|+.|+..|+.+.++.+++.|++++      ..+..|.||||+|+..   |+.+++++|+.. +.+++..|..|+||||
T Consensus       132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~-ga~in~~d~~g~TpLh  210 (278)
T 1dcq_A          132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQTGKGSTALH  210 (278)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSCTTCCCTTCCCHHH
T ss_pred             hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHC-CCCccccCCCCCCHHH
Confidence            34555555555555555555555522      2244555555555555   455555544332 4555556667778888


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCC
Q 035705          560 RAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKC  613 (758)
Q Consensus       560 ~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~  613 (758)
                      +|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++.
T Consensus       211 ~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          211 YCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            888899999999999999999999999999999999999999999999999863

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.83  E-value=9.7e-21  Score=163.50  Aligned_cols=109  Identities=34%  Similarity=0.453  Sum_probs=100.8

Q ss_pred             CCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q 035705          549 QKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALAR  628 (758)
Q Consensus       549 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~  628 (758)
                      ..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|++++.+|..|+||||+|+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~   83 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK   83 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HCCChhhHHHHHHHHHHHHHHhCCCccccccccCCCcc
Q 035705          629 ENGNGNEAENVILDELALTLVLDGTYVKKHTKCGKGSP  666 (758)
Q Consensus       629 ~~~~~~~~~~ll~~~~~~~L~~~g~~~~~~d~~g~t~l  666 (758)
                      ..++.+         ++++|+++|++++.++..|.||-
T Consensus        84 ~~~~~~---------~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           84 KNGHHE---------IVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             TTTCHH---------HHHHHHTTSSSHHHHSCCCC---
T ss_pred             HCCCHH---------HHHHHHHcCCCCCcCCccccccc
Confidence            999886         66789999999999999999974

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.83  E-value=2.1e-20  Score=194.53  Aligned_cols=147  Identities=22%  Similarity=0.223  Sum_probs=105.4

Q ss_pred             CCCCcHHHHHHHc-CCHHHHHHHHhCCCCCCcCC--CCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHH
Q 035705          485 ADGFSAAMIAAAA-GHVEAFRLLLHAGANIKLQN--KYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRA  561 (758)
Q Consensus       485 ~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~~--~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A  561 (758)
                      ..+.|+||.|+.. ++.++++.|+++|++++..+  ..|.||||+|+..|+.+++++|+. .+.+++..|..|+||||+|
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~-~Gadvn~~d~~G~TpLh~A  275 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQ-NGANVNQADSAGRGPLHHA  275 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHH
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHH
Confidence            3455778888877 88888888888888887776  677788888888888877776554 4677777788888999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCC---CCCCCCCCCCCcHHHHHHHCCC
Q 035705          562 AKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSG---AKCDIENARNETALALARENGN  632 (758)
Q Consensus       562 ~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~g---ad~~~~d~~g~t~L~~A~~~~~  632 (758)
                      +..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|++.|   ++....+..+.|+++++.....
T Consensus       276 ~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~~  349 (368)
T 3jue_A          276 TILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSL  349 (368)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC------------------------
T ss_pred             HHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999876   4445566788899988876543

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.81  E-value=1.8e-19  Score=148.73  Aligned_cols=93  Identities=35%  Similarity=0.522  Sum_probs=87.2

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 035705          312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICA  391 (758)
Q Consensus       312 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  391 (758)
                      +|+||||+|+..|+.+++++|++.|++++.    ++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~----~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~   76 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNA----KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA   76 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTC----CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcc----cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence            478999999999999999999999999876    7889999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHCCCC
Q 035705          392 RYKHEECLKFLASEGAD  408 (758)
Q Consensus       392 ~~g~~~iv~~Ll~~g~~  408 (758)
                      ..|+.+++++|+++|++
T Consensus        77 ~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           77 RNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             HTTCHHHHHHHHHTTCC
T ss_pred             HcCCHHHHHHHHHcCCC
Confidence            99999999999999875

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.81  E-value=1.1e-19  Score=189.13  Aligned_cols=147  Identities=14%  Similarity=0.124  Sum_probs=114.8

Q ss_pred             CCCCCCcHHHHHHHc-CChhHHHHHHHhhccccCCCC--CCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHH
Q 035705          516 QNKYGETAITLAELN-RNGEVLEQVILEYALEEGQKG--SAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLM  592 (758)
Q Consensus       516 ~~~~g~t~L~~A~~~-~~~~~v~~ll~~~~~~~~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~  592 (758)
                      ....+.|+||.|+.. ++.++++.|+ ..+.+++..+  ..|.||||+|+..|+.+++++|+++|+++|.+|..|+||||
T Consensus       195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL-~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh  273 (368)
T 3jue_A          195 GSLHPGALLFRASGHPPSLPTMADAL-AHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLH  273 (368)
T ss_dssp             --CCHHHHHHHHTSSSCCHHHHHHHH-HTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             ccCCCCcHHHHHHHccCCHHHHHHHH-HcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence            344577999999999 9999999877 5678888887  89999999999999999999999999999999999999999


Q ss_pred             HHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCccccccccCCCcchHH
Q 035705          593 LAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHTKCGKGSPHVK  669 (758)
Q Consensus       593 ~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~~~~~d~~g~t~l~~a  669 (758)
                      +|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+..      ...+++....+..+.|++++.
T Consensus       274 ~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~------~~~~~~~~~~~~~~~t~l~i~  344 (368)
T 3jue_A          274 HATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLA------KMREAEAAQGQAGDETYLDIF  344 (368)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH------HC-------------------
T ss_pred             HHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHc------CCCcccccccCCCCCCHHHHH
Confidence            99999999999999999999999999999999999999999876654422      123455566677788887764

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.78  E-value=2.5e-19  Score=154.60  Aligned_cols=108  Identities=35%  Similarity=0.480  Sum_probs=85.9

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHH
Q 035705          483 QDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAA  562 (758)
Q Consensus       483 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~  562 (758)
                      +|.+|.||||+|+..|+.+++++|+++|++++..|.                                  .|.||||+|+
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~----------------------------------~g~t~L~~A~   50 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSK----------------------------------DGNTPLHLAA   50 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCS----------------------------------SSCCTTHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC----------------------------------CCCCHHHHHH
Confidence            456667777777777777777777766666655554                                  5556677778


Q ss_pred             HcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHH
Q 035705          563 KRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETAL  624 (758)
Q Consensus       563 ~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L  624 (758)
                      ..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|+|+|.++..|.||-
T Consensus        51 ~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           51 KNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             TTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             HcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            88888999999999999999999999999999999999999999999999999999998873

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.74  E-value=8.2e-18  Score=143.43  Aligned_cols=92  Identities=37%  Similarity=0.459  Sum_probs=84.0

Q ss_pred             cCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHH
Q 035705          547 EGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALAL  626 (758)
Q Consensus       547 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~  626 (758)
                      ....+.+|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~   96 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDI   96 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHCCChhhHHH
Q 035705          627 ARENGNGNEAEN  638 (758)
Q Consensus       627 A~~~~~~~~~~~  638 (758)
                      |+..++.+++++
T Consensus        97 A~~~~~~~~~~~  108 (110)
T 2zgd_A           97 SIDNGNEDLAEI  108 (110)
T ss_dssp             HHHHTCHHHHHH
T ss_pred             HHHcCCHHHHHH
Confidence            999999986653

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.66  E-value=3.5e-16  Score=133.27  Aligned_cols=90  Identities=23%  Similarity=0.316  Sum_probs=84.4

Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 035705          309 ILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAM  388 (758)
Q Consensus       309 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~  388 (758)
                      .+.+|.||||+|+..|+.+++++|++.|++++.    .+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus        20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~----~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~   95 (110)
T 2zgd_A           20 MGSDLGKKLLEAARAGQDDEVRILMANGADVAA----KDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFD   95 (110)
T ss_dssp             --CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTC----CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             cCCccchHHHHHHHcCCHHHHHHHHHcCCCCCc----cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHH
Confidence            477899999999999999999999999998876    6889999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHH
Q 035705          389 ICARYKHEECLKFL  402 (758)
Q Consensus       389 ~A~~~g~~~iv~~L  402 (758)
                      +|+..|+.+++++|
T Consensus        96 ~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           96 ISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHh
Confidence            99999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	758
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-37
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-33
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-31
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-23
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-20
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-16
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-10
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-04
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-24
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-14
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-11
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-21
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-13
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-10
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-09
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-08
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	7e-20
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-12
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	9e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-06
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-19
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	9e-12
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	9e-10
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	9e-09
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-18
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-15
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-13
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	5e-09
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	0.004
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	0.004
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-17
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-17
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-13
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-12
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-16
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-11
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	6e-09
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	8e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.002
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-14
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	9e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-14
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-08
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	7e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	7e-11
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-10
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	5e-10
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	5e-08
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	5e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	7e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.001
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	3e-09
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	2e-08
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-08
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-06
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	6e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	7e-08
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-07
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	3e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.003
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	3e-07
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	0.001
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	0.003
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	3e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.004

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  143 bits (360), Expect = 2e-37
 Identities = 83/471 (17%), Positives = 151/471 (32%), Gaps = 79/471 (16%)

Query: 183 ALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVV 242
            L  A F G + +V  L++ G   N  +                   L  A  +    V 
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGASPNVSN-------------VKVETPLHMAARAGHTEVA 49

Query: 243 RLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLF 302
           + LLQ   K++ K +                              +      G    +  
Sbjct: 50  KYLLQNKAKVNAKAKDD-------------------------QTPLHCAARIGHTNMVKL 84

Query: 303 QHISPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGS 362
              +    +   T  H  +           +   ++KE      +K    P+H+AA+ G 
Sbjct: 85  LLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGK 144

Query: 363 AKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSI 422
            ++   L+    + N+    G T   +   + + + +K L   G       + G     I
Sbjct: 145 VRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHI 204

Query: 423 AKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDE 482
                      +     ++ G    + +    +PL    Q    + +   +     + + 
Sbjct: 205 ----AAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVAL-LLSKQANGNL 259

Query: 483 QDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILE 542
            +  G +   + A  GHV    +L+  G  +    + G T                    
Sbjct: 260 GNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTP------------------- 300

Query: 543 YALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSV 602
                          LH A+  G+  LV  L+    DVNA    GY+PL  AA+ GH  +
Sbjct: 301 ---------------LHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDI 345

Query: 603 CQLLISSGAKCDIENARNETALALARENGNGNEAE--NVILDELALTLVLD 651
             LL+ +GA  +  ++   T LA+A+  G  +  +   V+ DE +  LV D
Sbjct: 346 VTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSD 396

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (330), Expect = 1e-33
 Identities = 83/444 (18%), Positives = 143/444 (32%), Gaps = 54/444 (12%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGY-ATTAAVREDHLEILDLLIKAGACQEA 149
           T L +A+  G+L +V+ LL  GA+ N    +       A R  H E+   L++  A   A
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61

Query: 150 CEE----ALLETSYLGQARPAELL---MATDLIRPQVSVHALVSACFRGFVNVVDTLIKC 202
             +     L   + +G     +LL    A   +        L  A   G V  V  L++ 
Sbjct: 62  KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 121

Query: 203 GVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWS 262
                 +                    L  A    ++ V  LLL+     +   + G   
Sbjct: 122 EASQACMT-------------KKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTP 168

Query: 263 WDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAIL 322
                         +A  +      V+     G   H            NG T +H A  
Sbjct: 169 LH------------VAVHHNNLDI-VKLLLPRGGSPHSPA--------WNGYTPLHIAAK 207

Query: 323 CNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAA 382
            N       LL             S   + P+HLAA+ G A+++  L+S   N N    +
Sbjct: 208 QNQVEVARSLLQY----GGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKS 263

Query: 383 GETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRS 442
           G T   + A+  H      L   G  +      G     +        G  + V   ++ 
Sbjct: 264 GLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHV----ASHYGNIKLVKFLLQH 319

Query: 443 GNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEA 502
              + +     +SPL    Q    D +  L++      +E  +DG +   IA   G++  
Sbjct: 320 QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK-NGASPNEVSSDGTTPLAIAKRLGYISV 378

Query: 503 FRLL---LHAGANIKLQNKYGETA 523
             +L       + + + +K+  + 
Sbjct: 379 TDVLKVVTDETSFVLVSDKHRMSF 402

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 6e-07
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 589 TPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGN 632
           TPL +A+  GH  + + L+  GA  ++ N + ET L +A   G+
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGH 45

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (301), Expect = 7e-31
 Identities = 59/276 (21%), Positives = 111/276 (40%), Gaps = 11/276 (3%)

Query: 353 PIHLAARLGSAKILRRLISAGCNINSRTA-AGETAAMICARYKHEECLKFLASEGADLGL 411
            +  A +     ++++L+  G N+N +    G T      +   E+ ++ L   GAD  L
Sbjct: 8   LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67

Query: 412 INYAGQCANSIAKSSRWTLGFQQAV-----VDSIRSGNIIQSSNASRFSPLMFVTQANDV 466
               G     +A  +      +  +     V+            A+ +  +  +      
Sbjct: 68  RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR 127

Query: 467 DALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLL-HAGANIKLQNKYGETAIT 525
            A   L      D +     G +A M AA  GHVE  ++LL   GA++   +  G  A+ 
Sbjct: 128 GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALI 187

Query: 526 LAELNRNGEVLEQV---ILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRC-YDVN 581
            A L+ +   +E +   +L++  +   +G  G   L  A ++    LV  L+ +   ++N
Sbjct: 188 HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN 247

Query: 582 ASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIEN 617
            +D+DG T L+LA +     + +LL   GA  D  +
Sbjct: 248 DTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.1 bits (243), Expect = 4e-23
 Identities = 55/283 (19%), Positives = 110/283 (38%), Gaps = 13/283 (4%)

Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
               L+  A+   +   V+ LL    +  F  +    T   P+H A ++    I+  L+ 
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWT---PLHNAVQMSREDIVELLLR 60

Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQ------CANSIAKS 425
            G +   R   G T  ++ A     + LK   S+GAD+   ++ G             K+
Sbjct: 61  HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA 120

Query: 426 SRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDA 485
            ++       V    ++    +       + LM   +   V+ LK L++    D++  D 
Sbjct: 121 LKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN 180

Query: 486 DGFSAAMIAAAAGHV----EAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVIL 541
            G +A + A  +           LLL  GA++ ++ + G+T + LA   ++  ++++++ 
Sbjct: 181 MGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240

Query: 542 EYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASD 584
           +  +E     S G  AL  A +     +   L  R    +  D
Sbjct: 241 QEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.6 bits (221), Expect = 2e-20
 Identities = 58/337 (17%), Positives = 106/337 (31%), Gaps = 61/337 (18%)

Query: 182 HALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISV 241
           H L+ A     V++V  L++ G + N  +                   L  AV   +  +
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEGGANVNFQEE------------EGGWTPLHNAVQMSREDI 54

Query: 242 VRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHML 301
           V LLL+ G    ++ + GA  +                       A          L + 
Sbjct: 55  VELLLRHGADPVLRKKNGATPF---------------------LLAAIAGSVKLLKLFLS 93

Query: 302 FQHISPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLG 361
                      G T    A +    +A++ L     +     +T                
Sbjct: 94  KGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTK--------------- 138

Query: 362 SAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASE-GADLGLINYAGQCAN 420
                        +       G TA M  A   H E LK L  E GAD+   +  G+ A 
Sbjct: 139 ------------EDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL 186

Query: 421 SIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDL 480
             A  S      +      +  G  +        +PL+   +   +  +++L+E   +++
Sbjct: 187 IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEI 246

Query: 481 DEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQN 517
           ++ D+DG +A ++A      +   LL   GA+    +
Sbjct: 247 NDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.9 bits (188), Expect = 6e-16
 Identities = 57/300 (19%), Positives = 98/300 (32%), Gaps = 35/300 (11%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYAT--TAAVREDHLEILDLLIKAGACQE 148
             L  A    ++ LV++LL  GANVN +   G  T    AV+    +I++LL++ GA   
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 66

Query: 149 ACEEALLETSYLGQARPAELLMATDLIRPQVSVH-------ALVSACFRGFVNVVDTLIK 201
             ++       L     +  L+   L +             A + A   G V  +  L K
Sbjct: 67  LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK 126

Query: 202 CGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLL-QAGVKMDIKVRMGA 260
            G + N   +                 AL+ A     + V+++LL + G  ++    MG 
Sbjct: 127 RGANVNLRRK---TKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR 183

Query: 261 WSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNIL-HNGRTLIHH 319
            +               + D              GA           N+    G+T +  
Sbjct: 184 NALIHALL---------SSDDSDVEAITHLLLDHGA---------DVNVRGERGKTPLIL 225

Query: 320 AILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSR 379
           A+   +   V+ LL     +   +          + LA  L   KI   L   G + +  
Sbjct: 226 AVEKKHLGLVQRLLE---QEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG 282

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.7 bits (146), Expect = 1e-10
 Identities = 49/239 (20%), Positives = 87/239 (36%), Gaps = 49/239 (20%)

Query: 455 SPLMFVTQANDVDALKKLIEWADVDLDEQDAD-GFSAAMIAAAAGHVEAFRLLLH----- 508
             L+   Q  DVD +++L+E    +++ Q+ + G++    A      +   LLL      
Sbjct: 7   HLLIKAVQNEDVDLVQQLLE-GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP 65

Query: 509 ----------------------------AGANIKLQNKYGETAITLAELNRNGEVLEQVI 540
                                        GA++   + YG TA   A +    + L+ + 
Sbjct: 66  VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLY 125

Query: 541 LEYALEEGQ---------KGSAGFYALHRAAKRGDFDLVHTLVSRC-YDVNASDADGYTP 590
              A    +             G  AL  AA++G  +++  L+     DVNA D  G   
Sbjct: 126 KRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNA 185

Query: 591 LMLAAKSGHG----SVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELA 645
           L+ A  S       ++  LL+  GA  ++   R +T L LA E  +    + ++  E  
Sbjct: 186 LIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI 244

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 1e-06
 Identities = 32/140 (22%), Positives = 53/140 (37%), Gaps = 22/140 (15%)

Query: 91  TALFLAAHAGNLTLVRKLLS-LGANVNQKLFRG-----YATTAAVREDHLEILDLLIKAG 144
           TAL  AA  G++ +++ LL  +GA+VN     G     +A  ++   D   I  LL+  G
Sbjct: 150 TALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHG 209

Query: 145 ACQEACEE----ALLETSYLGQARPAELLMATDLIRPQVSVH--------ALVSACFRGF 192
           A      E     L+           + L    L +  + ++        AL+ A     
Sbjct: 210 ADVNVRGERGKTPLILAVEKKHLGLVQRL----LEQEHIEINDTDSDGKTALLLAVELKL 265

Query: 193 VNVVDTLIKCGVDANAIDRV 212
             + + L K G   +  D V
Sbjct: 266 KKIAELLCKRGASTDCGDLV 285

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 1e-04
 Identities = 31/145 (21%), Positives = 49/145 (33%), Gaps = 33/145 (22%)

Query: 486 DGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYAL 545
           +     + A     V+  + LL  GAN+  Q + G                         
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEG------------------------- 38

Query: 546 EEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQL 605
                   G+  LH A +    D+V  L+    D      +G TP +LAA +G   + +L
Sbjct: 39  --------GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKL 90

Query: 606 LISSGAKCDIENARNETALALAREN 630
            +S GA  +  +    TA   A   
Sbjct: 91  FLSKGADVNECDFYGFTAFMEAAVY 115

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 5e-04
 Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 586 DGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARN-ETALALARENGNGNEAENVI 640
           +    L+ A ++    + Q L+  GA  + +      T L  A +    +  E ++
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL 59

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score =  103 bits (256), Expect = 2e-24
 Identities = 36/266 (13%), Positives = 71/266 (26%), Gaps = 30/266 (11%)

Query: 353 PIHLAARLGSA---KILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGAD- 408
              +AA  G +     L  L+++   +    A    A  + A   H   L  L       
Sbjct: 93  ICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTE 152

Query: 409 -LGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVD 467
            + +I      A     +    L     + +   +         + ++           +
Sbjct: 153 IMAMIQAENYHAF-RLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHN 211

Query: 468 ALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLA 527
            +  L+        +       A +     G       +         + K    A  L+
Sbjct: 212 VINFLL--------DCPVMLAYAEIHEFEYGEKYVNPFIARHVN----RLKEMHDAFKLS 259

Query: 528 ELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYD-----VNA 582
             +   +++ +        E  +G      L R       D +  L+S            
Sbjct: 260 NPDGVFDLVTK-------SECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTAT 312

Query: 583 SDADGYTPLMLAAKSGHGSVCQLLIS 608
              D    L LA + G+   C LL+S
Sbjct: 313 IPGDANELLRLALRLGNQGACALLLS 338

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 71.8 bits (175), Expect = 5e-14
 Identities = 27/185 (14%), Positives = 46/185 (24%), Gaps = 28/185 (15%)

Query: 445 IIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFR 504
           I    N      L  +      +  +  I   ++ L            +       +  +
Sbjct: 4   IHNIENYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQ 63

Query: 505 LLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKR 564
           LL    A+     K   +                          +KG         AA  
Sbjct: 64  LLCLYYAHYNRNAKQLWSDAH-----------------------KKGIKSEVICFVAAIT 100

Query: 565 GDFD---LVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENAR-- 619
           G       +  L++    V    A+ Y    LAA++GH  V   L        +   +  
Sbjct: 101 GCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE 160

Query: 620 NETAL 624
           N  A 
Sbjct: 161 NYHAF 165

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 64.1 bits (155), Expect = 1e-11
 Identities = 42/264 (15%), Positives = 72/264 (27%), Gaps = 35/264 (13%)

Query: 91  TALFLAA---HAGNLTLVRKLLSLGANVNQKLFRGY-ATTAAVREDHLEILDLLIKAGAC 146
              F+AA    +  L  +  LL+    V       Y A   A    HL +L+ L +    
Sbjct: 92  VICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPT 151

Query: 147 QEAC------EEALLETSYLGQARPAELLMATDLIRPQVSVHA------LVSACFRGFVN 194
           +           A    +  G       L           + A        +A  RG  N
Sbjct: 152 EIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHN 211

Query: 195 VVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDI 254
           V++ L+ C V     +           +     N  +   V+R   +      +      
Sbjct: 212 VINFLLDCPVMLAYAEI------HEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVF 265

Query: 255 KVRM---GAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILH 311
            +         + M      R    L +        + +  S   I  +      P    
Sbjct: 266 DLVTKSECLQGFYMLRNLIRRNDEVLLD-------DIRFLLSIPGIKALAPTATIPG--- 315

Query: 312 NGRTLIHHAILCNNARAVELLLNC 335
           +   L+  A+   N  A  LLL+ 
Sbjct: 316 DANELLRLALRLGNQGACALLLSI 339

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 52.2 bits (124), Expect = 1e-07
 Identities = 24/132 (18%), Positives = 43/132 (32%), Gaps = 13/132 (9%)

Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
           RL+         Q+      ++L  L+    +   +     +E+ ++    +YA      
Sbjct: 17  RLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYA------ 70

Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSV---CQLLISSGAKCDIENARN 620
                          D +           +AA +G  S      LL++S     +  A N
Sbjct: 71  ----HYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAEN 126

Query: 621 ETALALARENGN 632
             A  LA ENG+
Sbjct: 127 YQAFRLAAENGH 138

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 92.1 bits (227), Expect = 3e-21
 Identities = 41/265 (15%), Positives = 83/265 (31%), Gaps = 27/265 (10%)

Query: 353 PIHLAARLGSAKILRRLISAGCN---INSRTAAGETAAMICARYKHEECLKFLASEGADL 409
            +HLA        L  L+        ++ +   G+TA  + A       ++ L + GA +
Sbjct: 12  ALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV 71

Query: 410 GLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDAL 469
            +    G  A  +A      +         ++         +  +               
Sbjct: 72  LVAERGGHTALHLA----CRVRAHTCACVLLQPRPSHPRDASDTY--------------- 112

Query: 470 KKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAEL 529
                         D     AA+ +      E           ++ +N  G T + +A +
Sbjct: 113 -----LTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVI 167

Query: 530 NRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYT 589
           +++ E++  +    A     + + G   LH A +     ++  L+    D  A    G T
Sbjct: 168 HKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRT 227

Query: 590 PLMLAAKSGHGSVCQLLISSGAKCD 614
           PL  A    +  + +LL + GA   
Sbjct: 228 PLGSALLRPNPILARLLRAHGAPEP 252

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.4 bits (163), Expect = 5e-13
 Identities = 45/251 (17%), Positives = 74/251 (29%), Gaps = 35/251 (13%)

Query: 183 ALVSACFRGFVNVVDTLIKCGVDANAID-----------------------RVLLQSSKP 219
           AL  A        +D L+        +D                       ++    +  
Sbjct: 12  ALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV 71

Query: 220 ALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWDMD-TGEELRVGAGLA 278
            +       AL  A   R  +   +LLQ              +   D T +     A + 
Sbjct: 72  LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVD 131

Query: 279 EDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCNNARAVELLLNCAVD 338
                        E     L            ++G T +H A++  +A  V LL +   D
Sbjct: 132 SQPNPENEEEPRDEDWRLQLEAEN--------YDGHTPLHVAVIHKDAEMVRLLRDAGAD 183

Query: 339 KEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEEC 398
              P  T  +T   P+HLA    +A +L  L+ AG +  +R   G T         +   
Sbjct: 184 LNKPEPTCGRT---PLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPIL 240

Query: 399 LKFLASEGADL 409
            + L + GA  
Sbjct: 241 ARLLRAHGAPE 251

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.5 bits (145), Expect = 1e-10
 Identities = 41/228 (17%), Positives = 68/228 (29%), Gaps = 49/228 (21%)

Query: 454 FSPLMFVTQANDVDALKKLIEW-ADVD-LDEQDADGFSAAMIAAAAGHVEAFRLLLHAGA 511
            + L           L  L+ + A  + LD Q+  G +A  +AA  G       L  AGA
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69

Query: 512 NIKLQNKYGETAITLAELNRNGEVLEQVI-------------LEYALEEGQKGSAGFYAL 558
            + +  + G TA+ LA   R       ++                  ++    ++   A 
Sbjct: 70  GVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAA 129

Query: 559 HRAAKRGDFDLVHTLVSRCYDVNASDADG------------------------------- 587
             +    + +           + A + DG                               
Sbjct: 130 VDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEP 189

Query: 588 ---YTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGN 632
               TPL LA ++   SV +LL+ +GA          T L  A    N
Sbjct: 190 TCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPN 237

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.0 bits (136), Expect = 2e-09
 Identities = 28/140 (20%), Positives = 46/140 (32%), Gaps = 3/140 (2%)

Query: 554 GFYALHRAAKRGDFDLVHTLVSRCYD---VNASDADGYTPLMLAAKSGHGSVCQLLISSG 610
           G  ALH A        +  L+        ++  +  G T L LAA  G  S  + L ++G
Sbjct: 9   GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG 68

Query: 611 AKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHTKCGKGSPHVKL 670
           A   +      TAL LA        A  ++    +       TY+ +   C   + H   
Sbjct: 69  AGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128

Query: 671 LKMWGKSRKRNVVCRAAEVG 690
                 + +     R  +  
Sbjct: 129 AVDSQPNPENEEEPRDEDWR 148

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.9 bits (128), Expect = 2e-08
 Identities = 30/234 (12%), Positives = 61/234 (26%), Gaps = 34/234 (14%)

Query: 484 DADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEY 543
             DG +A  +A    H      LL   A  +  +                          
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDL------------------------- 40

Query: 544 ALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVC 603
                 +   G  ALH AA  G+   V  L +    V  ++  G+T L LA +    +  
Sbjct: 41  ------QNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCA 94

Query: 604 QLLISSGAKCDIENARNETALALARENGNGNEA---ENVILDELALTLVLDGTYVKKHTK 660
            +L+        + +      +        +     ++    E       +   ++   +
Sbjct: 95  CVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE 154

Query: 661 CGKGSPHVKLLKMWGKSRKRNVVCRAAEVGPSDTFRWNRRRKFDVEEPGMFHVV 714
              G   + +  +   +    ++  A            R       E     V+
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVL 208

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.5 bits (119), Expect = 3e-07
 Identities = 33/284 (11%), Positives = 63/284 (22%), Gaps = 45/284 (15%)

Query: 228 NALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCA 287
            AL  AV+ +    +  LL      +                   +             A
Sbjct: 11  TALHLAVIHQHEPFLDFLLGFSAGHEY------------------LDLQNDLGQTALHLA 52

Query: 288 VEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYS 347
               E+S                  G T +H A          +LL              
Sbjct: 53  AILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHP------- 105

Query: 348 KTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGA 407
                                 ++   +    T+    AA+        E          
Sbjct: 106 ---------------RDASDTYLTQSQDCTPDTSHA-PAAVDSQPNPENEEEPRDEDWRL 149

Query: 408 DLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVD 467
               +       ++    +      +   +      ++ +       +PL    +A    
Sbjct: 150 Q---LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAAS 206

Query: 468 ALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGA 511
            L+ L++ A  D   +   G +    A    +    RLL   GA
Sbjct: 207 VLELLLK-AGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.8 bits (99), Expect = 7e-05
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGY-ATTAAVREDHLEILDLLIKAGA 145
           T L LA  A   +++  LL  GA+   +++ G     +A+   +  +  LL   GA
Sbjct: 194 TPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 88.3 bits (217), Expect = 7e-20
 Identities = 47/275 (17%), Positives = 86/275 (31%), Gaps = 23/275 (8%)

Query: 353 PIHLA-ARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASE------ 405
           PI L     GS  I   +     NI        T     A     E  + L         
Sbjct: 3   PIKLHTEAAGSYAITEPITRESVNIID-PRHNRTVLHWIASNSSAEKSEDLIVHEAKECI 61

Query: 406 --GADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQA 463
             GAD+  ++        +A  +R        +          +S             + 
Sbjct: 62  AAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSER--SALHQAAANRD 119

Query: 464 NDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHV-----------EAFRLLLHAGAN 512
             +            D++E D +G +A MI A                +  ++     A 
Sbjct: 120 FGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAAR 179

Query: 513 IKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHT 572
              +   G TA+  A    N  +++ ++ E    + ++   G   +  AA+ G  ++V  
Sbjct: 180 KDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMY 239

Query: 573 LVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLI 607
           L+ +   V A DA  +T   LA  + H ++  +  
Sbjct: 240 LIQQGASVEAVDATDHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 65.1 bits (157), Expect = 5e-12
 Identities = 43/313 (13%), Positives = 85/313 (27%), Gaps = 42/313 (13%)

Query: 91  TALFLA-AHAGNLTLVRKLLSLGANVNQKLFRGYATTAAVREDHLEILDLLIKAGACQEA 149
           + + L    AG+  +   +     N+                   E  + LI   A +  
Sbjct: 2   SPIKLHTEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECI 61

Query: 150 CEEALLETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDANAI 209
              A +      +  P  L +     R    +    +                       
Sbjct: 62  AAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTI------------------- 102

Query: 210 DRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWDMDTGE 269
                       +   + +AL  A  +R   ++  +L +         +           
Sbjct: 103 ------------YNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIV 150

Query: 270 ELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCNNARAV 329
               G            + +     GA +         +  + GRT +H+A   +N   V
Sbjct: 151 AHNEG-------RDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIV 203

Query: 330 ELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMI 389
           + L+      +       KT   PI LAA+ G  +++  LI  G ++ +  A   TA  +
Sbjct: 204 KYLVGEKGSNKDKQDEDGKT---PIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQL 260

Query: 390 CARYKHEECLKFL 402
                H   +   
Sbjct: 261 AQANNHHNIVDIF 273

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 52.4 bits (124), Expect = 6e-08
 Identities = 38/300 (12%), Positives = 79/300 (26%), Gaps = 40/300 (13%)

Query: 208 AIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWDMDT 267
           AI   + + S   +    +   L     +        L+    K  I    GA    MD 
Sbjct: 15  AITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIA--AGADVNAMDC 72

Query: 268 GEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCNNAR 327
            E   +   +          +    +   I +   +        N    +    + N+ +
Sbjct: 73  DENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMV-YMLNSTK 131

Query: 328 AVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAA 387
               +     +    +   +  E R    +A+L   K  +         +S    G TA 
Sbjct: 132 LKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTAL 191

Query: 388 MICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQ 447
              A+  +   +K+                                         G+   
Sbjct: 192 HYAAQVSNMPIVKY------------------------------------LVGEKGSNKD 215

Query: 448 SSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLL 507
             +    +P+M   Q   ++ +  LI+     ++  DA   +A  +A A  H     +  
Sbjct: 216 KQDEDGKTPIMLAAQEGRIEVVMYLIQ-QGASVEAVDATDHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 49.0 bits (115), Expect = 9e-07
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGY-ATTAAVREDHLEILDLLIKA 143
           T + LAA  G + +V  L+  GA+V       + A   A   +H  I+D+  + 
Sbjct: 223 TPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 47.4 bits (111), Expect = 2e-06
 Identities = 15/61 (24%), Positives = 20/61 (32%), Gaps = 4/61 (6%)

Query: 558 LHRAAKRGDFDLVHTLVSRCYDVNASDA-DGYTPLMLAAKSGHGSVCQLLISSGAKCDIE 616
           LH  A  G + +   +      VN  D     T L   A +      + LI   AK  I 
Sbjct: 6   LHTEAA-GSYAITEPITRE--SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIA 62

Query: 617 N 617
            
Sbjct: 63  A 63

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 86.3 bits (212), Expect = 4e-19
 Identities = 34/285 (11%), Positives = 78/285 (27%), Gaps = 27/285 (9%)

Query: 314 RTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAG 373
              +   +          L N   D          +  +  H++      ++     +  
Sbjct: 40  EAFLQRLLFPEIQEMPTSLNN---DSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQ 96

Query: 374 CNINSRT-AAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGF 432
            N+N      G T         + E +K L   G++    +  G+     A  S      
Sbjct: 97  LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDS 156

Query: 433 QQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAM 492
                        +   ++   + L  +   + +       ++                 
Sbjct: 157 GTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYY---------------- 200

Query: 493 IAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEG--QK 550
                  +    ++      I+      E+        R   +LE + L++ +      +
Sbjct: 201 -----LDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQ 255

Query: 551 GSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAA 595
            S G   L+ AA+ G+  +V  L+    D   ++  G  P+   A
Sbjct: 256 DSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.3 bits (155), Expect = 9e-12
 Identities = 25/189 (13%), Positives = 56/189 (29%), Gaps = 20/189 (10%)

Query: 464 NDVDALKKLIEWADVDLDEQ-DADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGET 522
           + +  +        ++L+   D  G +      +  ++E  + L+  G+N    +  GE+
Sbjct: 83  SLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGES 142

Query: 523 AITLAELNRNGE---VLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYD 579
            +  A  + N       E ++         + S     LH                   D
Sbjct: 143 CLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLD 202

Query: 580 -------------VNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNE---TA 623
                        + +   +  +           S+ + L       ++ NA++    T 
Sbjct: 203 ILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTC 262

Query: 624 LALARENGN 632
           L +A   GN
Sbjct: 263 LNIAARLGN 271

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.1 bits (139), Expect = 9e-10
 Identities = 24/192 (12%), Positives = 58/192 (30%), Gaps = 7/192 (3%)

Query: 229 ALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAV 288
            L        + +V+ L++ G                ++     V +    D       +
Sbjct: 110 PLHWLTSIANLELVKHLVKHGSNRL------YGDNMGESCLVKAVKSVNNYDSGTFEALL 163

Query: 289 EYFESSGAILHMLFQH-ISPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYS 347
           +Y      +   + +  +   I+ +G T    A        +  ++              
Sbjct: 164 DYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEK 223

Query: 348 KTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGA 407
           +++    +   +    + L         +N++ + G+T   I AR  +   +  L   GA
Sbjct: 224 ESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGA 283

Query: 408 DLGLINYAGQCA 419
           D  + N +G   
Sbjct: 284 DPFIANKSGLRP 295

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.1 bits (131), Expect = 9e-09
 Identities = 20/137 (14%), Positives = 45/137 (32%), Gaps = 1/137 (0%)

Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
           + L     N   Q    E  +         E+   +  + +    + GS+     H +  
Sbjct: 23  KALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFD 82

Query: 564 RGDFDLVHTLVSRCYDVNAS-DADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNET 622
               ++     +   ++N   D  G TPL       +  + + L+  G+     +   E+
Sbjct: 83  SLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGES 142

Query: 623 ALALARENGNGNEAENV 639
            L  A ++ N  ++   
Sbjct: 143 CLVKAVKSVNNYDSGTF 159

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.3 bits (98), Expect = 1e-04
 Identities = 28/186 (15%), Positives = 52/186 (27%), Gaps = 19/186 (10%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQ--KLFRGYATTAAVREDHLEI------LDLLIK 142
           T L       NL LV+ L+  G+N      +       A    ++ +       LD L  
Sbjct: 109 TPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP 168

Query: 143 AGACQEACEEALLETSYLGQARPAELLMATDLIRPQVSVHALVS---ACFRGFVNVVDTL 199
               +++    +L   ++          A       + +  +V       +   N  ++ 
Sbjct: 169 CLILEDSMNRTIL--HHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK 226

Query: 200 IKCGVDANAIDRVLLQSSKPALHANFDCN------ALVGAVVSRQISVVRLLLQAGVKMD 253
                       +     K  +    +         L  A     IS+V  LL  G    
Sbjct: 227 PNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPF 286

Query: 254 IKVRMG 259
           I  + G
Sbjct: 287 IANKSG 292

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 84.8 bits (208), Expect = 1e-18
 Identities = 65/301 (21%), Positives = 104/301 (34%), Gaps = 50/301 (16%)

Query: 338 DKEFPVQTYSKTELR-----PIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICAR 392
           D E PV    KT+++         A   G  + + RL+  G +IN     G TA      
Sbjct: 23  DLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACI 82

Query: 393 YKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNAS 452
             + + +KFL   GA+             I   +  + G+       I  G  + + N  
Sbjct: 83  DDNVDMVKFLVENGAN----INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVN-- 136

Query: 453 RFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGAN 512
                       D+   + + E    +++ Q  D  +A          +A + L     N
Sbjct: 137 -----SEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIN 191

Query: 513 IKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHT 572
                K G TA                                  LH AA +G  +++  
Sbjct: 192 DVRHAKSGGTA----------------------------------LHVAAAKGYTEVLKL 217

Query: 573 LVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGN 632
           L+   YDVN  D DG+TPL  AA  G    C++L+ +    +  N   +TA  +A E+  
Sbjct: 218 LIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDIL 277

Query: 633 G 633
           G
Sbjct: 278 G 278

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 74.8 bits (182), Expect = 3e-15
 Identities = 51/272 (18%), Positives = 95/272 (34%), Gaps = 28/272 (10%)

Query: 289 EYFESSGAILHMLFQHISPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSK 348
            +  S   +   + +     +  +   +   A    +   V  LL    D    +   + 
Sbjct: 16  RWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGAD----INYANV 71

Query: 349 TELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGAD 408
             L  +H A    +  +++ L+  G NIN     G       A   + +  ++L S+GA 
Sbjct: 72  DGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAH 131

Query: 409 LGLINYAGQCANSIAKSSR-----------------------WTLGFQQAVVDSIRSGNI 445
           +G +N  G     IA+                            +  + A          
Sbjct: 132 VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIN 191

Query: 446 IQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRL 505
                 S  + L         + LK LI+    D++ +D DG++    AA  G  EA R+
Sbjct: 192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQA-RYDVNIKDYDGWTPLHAAAHWGKEEACRI 250

Query: 506 LLHAGANIKLQNKYGETAITLAELNRNGEVLE 537
           L+    +++  NK G+TA  +A+ +  G + E
Sbjct: 251 LVENLCDMEAVNKVGQTAFDVADEDILGYLEE 282

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 69.0 bits (167), Expect = 3e-13
 Identities = 41/245 (16%), Positives = 74/245 (30%), Gaps = 15/245 (6%)

Query: 183 ALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVV 242
             ++AC  G    V  L++ G D N  +                  AL  A +   + +V
Sbjct: 43  VFLAACSSGDTEEVLRLLERGADINYAN-------------VDGLTALHQACIDDNVDMV 89

Query: 243 RLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLF 302
           + L++ G  ++     G               A           AV     +   +    
Sbjct: 90  KFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEE 149

Query: 303 QHISPNILHNGRTLIHHAILCNNARA--VELLLNCAVDKEFPVQTYSKTELRPIHLAARL 360
                      R  +             +                ++K+    +H+AA  
Sbjct: 150 AMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAK 209

Query: 361 GSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCAN 420
           G  ++L+ LI A  ++N +   G T     A +  EE  + L     D+  +N  GQ A 
Sbjct: 210 GYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAF 269

Query: 421 SIAKS 425
            +A  
Sbjct: 270 DVADE 274

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 55.9 bits (133), Expect = 5e-09
 Identities = 54/325 (16%), Positives = 95/325 (29%), Gaps = 53/325 (16%)

Query: 95  LAAHAGNLTLVRKLLSLGANVNQKLFRGYATTAAVREDHLEILDLLIKAGACQEACEEAL 154
           L    G+ T +   +        K   G    AA      E +  L++ GA         
Sbjct: 14  LKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVD- 72

Query: 155 LETSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDANAIDRVLL 214
                                     + AL  AC    V++V  L++ G + N       
Sbjct: 73  -------------------------GLTALHQACIDDNVDMVKFLVENGANINQ------ 101

Query: 215 QSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVG 274
                    N     L  A     + +   L+  G  +      G    D+   E +   
Sbjct: 102 -------PDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEEL 154

Query: 275 AGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILH------NGRTLIHHAILCNNARA 328
                +           E    +L    Q ++   ++      +G T +H A        
Sbjct: 155 LQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEV 214

Query: 329 VELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAM 388
           ++LL+    D    V         P+H AA  G  +  R L+   C++ +    G+TA  
Sbjct: 215 LKLLIQARYD----VNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFD 270

Query: 389 ICARYKHEECLKFLASEGADLGLIN 413
           +      E+ L +L        L++
Sbjct: 271 VAD----EDILGYLEELQKKQNLLH 291

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 37.4 bits (85), Expect = 0.004
 Identities = 16/61 (26%), Positives = 21/61 (34%)

Query: 82  VYEEFKTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTAAVREDHLEILDLLI 141
           V  +     T L  AAH G     R L+    ++      G        ED L  L+ L 
Sbjct: 225 VNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQ 284

Query: 142 K 142
           K
Sbjct: 285 K 285

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 37.4 bits (85), Expect = 0.004
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 82  VYEEFKTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGY-ATTAAVREDHLEILDLL 140
                K+  TAL +AA  G   +++ L+    +VN K + G+    AA      E   +L
Sbjct: 192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL 251

Query: 141 IKAGA 145
           ++   
Sbjct: 252 VENLC 256

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.8 bits (198), Expect = 1e-17
 Identities = 46/223 (20%), Positives = 89/223 (39%), Gaps = 10/223 (4%)

Query: 388 MIC--ARYKHEECLK-FLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGN 444
           M+C  A     E LK  + ++ +     +   + A   A S+    G  + V   ++ G 
Sbjct: 6   MVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSA----GHTEIVEFLLQLGV 61

Query: 445 IIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFR 504
            +   + + +SPL     A   + +K L+      ++  + +G +    AA+    E   
Sbjct: 62  PVNDKDDAGWSPLHIAASAGRDEIVKALLGK-GAQVNAVNQNGCTPLHYAASKNRHEIAV 120

Query: 505 LLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKR 564
           +LL  GAN   ++ Y  TA+  A        +  ++L Y      + + G   LH A   
Sbjct: 121 MLLEGGANPDAKDHYEATAMHRAAAK-GNLKMIHILLYYKASTNIQDTEGNTPLHLACDE 179

Query: 565 GDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLI 607
              +    LVS+   +   + +  TPL +A   G G + + ++
Sbjct: 180 ERVEEAKLLVSQGASIYIENKEEKTPLQVAKG-GLGLILKRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.2 bits (194), Expect = 3e-17
 Identities = 54/211 (25%), Positives = 78/211 (36%), Gaps = 36/211 (17%)

Query: 455 SPLMFVTQA--NDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVE----------- 501
           S LM    A    ++ LK+ I          D D  +A   A +AGH E           
Sbjct: 3   SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 62

Query: 502 ----------------------AFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQV 539
                                   + LL  GA +   N+ G T +  A      E+   +
Sbjct: 63  VNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAV-M 121

Query: 540 ILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGH 599
           +LE       K      A+HRAA +G+  ++H L+      N  D +G TPL LA     
Sbjct: 122 LLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEER 181

Query: 600 GSVCQLLISSGAKCDIENARNETALALAREN 630
               +LL+S GA   IEN   +T L +A+  
Sbjct: 182 VEEAKLLVSQGASIYIENKEEKTPLQVAKGG 212

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.1 bits (165), Expect = 2e-13
 Identities = 41/230 (17%), Positives = 81/230 (35%), Gaps = 43/230 (18%)

Query: 311 HNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLI 370
            + RT +H A    +   V       +    PV         P+H+AA  G  +I++ L+
Sbjct: 35  QDSRTALHWACSAGHTEIV----EFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL 90

Query: 371 SAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTL 430
             G  +N+    G T     A     E    L   GA+    ++                
Sbjct: 91  GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEA------------- 137

Query: 431 GFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSA 490
                                   + +       ++  +  L+ +     + QD +G + 
Sbjct: 138 ------------------------TAMHRAAAKGNLKMIHILLYY-KASTNIQDTEGNTP 172

Query: 491 AMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVI 540
             +A     VE  +LL+  GA+I ++NK  +T + +A+    G +L++++
Sbjct: 173 LHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK-GGLGLILKRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.0 bits (157), Expect = 2e-12
 Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 2/140 (1%)

Query: 494 AAAAGHVEAFR-LLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGS 552
            A +G +E  +  +L   +     ++   TA+  A        + + +L+  +    K  
Sbjct: 10  LAYSGKLEELKESILADKSLATRTDQDSRTALHWACSA-GHTEIVEFLLQLGVPVNDKDD 68

Query: 553 AGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAK 612
           AG+  LH AA  G  ++V  L+ +   VNA + +G TPL  AA      +  +L+  GA 
Sbjct: 69  AGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 128

Query: 613 CDIENARNETALALARENGN 632
            D ++    TA+  A   GN
Sbjct: 129 PDAKDHYEATAMHRAAAKGN 148

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 7e-07
 Identities = 27/222 (12%), Positives = 58/222 (26%), Gaps = 43/222 (19%)

Query: 286 CAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQT 345
            A     +      +       +    G + +H A        V+ LL         V  
Sbjct: 43  WACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGA----QVNA 98

Query: 346 YSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASE 405
            ++    P+H AA     +I   L+  G N +++     TA    A   + + +  L   
Sbjct: 99  VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHIL--- 155

Query: 406 GADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQAND 465
                                             +         +    +PL        
Sbjct: 156 ----------------------------------LYYKASTNIQDTEGNTPLHLACDEER 181

Query: 466 VDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLL 507
           V+  K L+      +  ++ +  +   + A  G     + ++
Sbjct: 182 VEEAKLLVS-QGASIYIENKEEKTPLQV-AKGGLGLILKRMV 221

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.0 bits (185), Expect = 4e-16
 Identities = 51/225 (22%), Positives = 95/225 (42%)

Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
           +G T +H A++  N  AV  L+N        +  Y+     P+HLA       ++R L++
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 61

Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLG 431
           AG +  +    G+TAA +   ++   CL+ L    A   L   A       A        
Sbjct: 62  AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE 121

Query: 432 FQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAA 491
            Q+ V   +  G  I + +       +     N+  ++ +L+     +++ Q   G SA 
Sbjct: 122 CQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSAL 181

Query: 492 MIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVL 536
             A+  G +   R L+ +GA+  L+N + +T + +A   R  ++L
Sbjct: 182 HSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.6 bits (150), Expect = 2e-11
 Identities = 40/218 (18%), Positives = 73/218 (33%), Gaps = 40/218 (18%)

Query: 455 SPLMFVTQANDVDALKKLIEW---ADVDLDEQDADGFSAAMIAAAA-------------- 497
           +PL       ++ A+ +L+        +LD  +    +   +A                 
Sbjct: 5   TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGA 64

Query: 498 -------------------GHVEAFRLLLHAGANIKLQNKY----GETAITLAELNRNGE 534
                                    R LL + A   L  +     G TA+ +A      E
Sbjct: 65  SPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQE 124

Query: 535 VLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLA 594
            ++ ++   A  +     +G   L  A +     +V  L+    +VNA    G + L  A
Sbjct: 125 TVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSA 184

Query: 595 AKSGHGSVCQLLISSGAKCDIENARNETALALARENGN 632
           +  G   + + L+ SGA   ++N  N+T L +AR    
Sbjct: 185 SGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRV 222

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (130), Expect = 6e-09
 Identities = 33/226 (14%), Positives = 72/226 (31%), Gaps = 12/226 (5%)

Query: 183 ALVSACFRGFVNVVDTLIK----CGVDANAIDR----VLLQSSKPALHANFDCNALVGAV 234
            L  A  +G +  V  L+      G + +  +      L  +    L +        GA 
Sbjct: 6   PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS 65

Query: 235 VSRQISVVRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESS 294
                   +       +      + A       G              +        + +
Sbjct: 66  PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQET 125

Query: 295 GAILHMLFQHISPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPI 354
             +L      I    + +GR+ + HA+  N+   V+LLL    +    + + S      +
Sbjct: 126 VQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGS----SAL 181

Query: 355 HLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLK 400
           H A+  G   ++R L+ +G + + +    +T  M+    +  + L+
Sbjct: 182 HSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (106), Expect = 8e-06
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 554 GFYALHRAAKRGDFDLVHTLVSRCY----DVNASDADGYTPLMLAAKSGHGSVCQLLISS 609
           G   LH A  +G+   VH LV+       +++  +    TPL LA  +   SV +LL+++
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 62

Query: 610 GAKCDIENARNETALALARENGN 632
           GA     +   +TA  LA E+ +
Sbjct: 63  GASPMALDRHGQTAAHLACEHRS 85

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 1e-05
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 4/49 (8%)

Query: 586 DGYTPLMLAAKSGHGSVCQLLIS----SGAKCDIENARNETALALAREN 630
           DG TPL +A   G+      L++     G + DI N   +T L LA   
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVIT 50

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 93  LFLAAHAGNLTLVRKLLSLGANVNQKLFRGY-ATTAAVREDHLEIL 137
           L  A+  G L LVR L+  GA+ + K          A     ++IL
Sbjct: 181 LHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL 226

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.4 bits (173), Expect = 2e-14
 Identities = 31/261 (11%), Positives = 78/261 (29%), Gaps = 38/261 (14%)

Query: 353 PIHLAARLGSAKILRRLI-SAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGL 411
           P+H A        ++ L+ S    +  +   G         ++  E   FL S+  ++ L
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 62

Query: 412 INYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKK 471
            +Y      +    +      +       R      +   ++    + +           
Sbjct: 63  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKK------ 116

Query: 472 LIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNR 531
                                        E  + L+  GA++++++K+ +  +  A    
Sbjct: 117 ---------------------------WFEVSQFLIENGASVRIKDKFNQIPLHRAASVG 149

Query: 532 NGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRC-YDVNASDADGYTP 590
           + +++E +          +   G+  L  A   G  D    LV +   + +  D  G   
Sbjct: 150 SLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKA 209

Query: 591 LMLAAKSGHGSVCQLLISSGA 611
             +A    +  V +  +++  
Sbjct: 210 EDVAL---NEQVKKFFLNNVV 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.3 bits (126), Expect = 2e-08
 Identities = 45/214 (21%), Positives = 69/214 (32%), Gaps = 39/214 (18%)

Query: 456 PLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKL 515
           PL      N+   +++L+      L ++D DG      + +    E    LL    N+ L
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 62

Query: 516 QNKYGETAITLAELNRNGEVLEQVI----------------------------------- 540
            +   ++  T   +  +   LE V                                    
Sbjct: 63  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 122

Query: 541 --LEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSR-CYDVNASDADGYTPLMLAAKS 597
             +E       K       LHRAA  G   L+  L       VN  D  G+TPL  A   
Sbjct: 123 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE 182

Query: 598 GHGSVCQLLISS-GAKCDIENARNETALALAREN 630
           GHG    LL+   GA+ D+ + +   A  +A   
Sbjct: 183 GHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE 216

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.2 bits (105), Expect = 9e-06
 Identities = 30/203 (14%), Positives = 58/203 (28%), Gaps = 7/203 (3%)

Query: 311 HNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSA-KILRRL 369
            +GR  +H ++          LL+   +                   +            
Sbjct: 32  QDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYD 91

Query: 370 ISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWT 429
                ++N  T  G T   +    K  E  +FL   GA + + +   Q     A S    
Sbjct: 92  RPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSL 151

Query: 430 LGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFS 489
              +          + +   +   ++PL         DA   L+E    + D  D  G  
Sbjct: 152 KLIEL---LCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAK 208

Query: 490 AAMIAAAAGHVEAFRLLLHAGAN 512
           A  +A    + +  +  L+   +
Sbjct: 209 AEDVAL---NEQVKKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.8 bits (91), Expect = 6e-04
 Identities = 37/247 (14%), Positives = 63/247 (25%), Gaps = 36/247 (14%)

Query: 183 ALVSACFRGFVNVVDTLIKC-GVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISV 241
            L  AC       V  L+          D                   L  +V  +   +
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQKD-------------QDGRIPLHWSVSFQAHEI 49

Query: 242 VRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHML 301
              LL     +++        W                                  L+  
Sbjct: 50  TSFLLSKMENVNLDDYPDDSGW-----------------TPFHIACSVGNLEVVKSLYDR 92

Query: 302 FQHISPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLG 361
                 N + N      H  +      V   L            +++    P+H AA +G
Sbjct: 93  PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQI---PLHRAASVG 149

Query: 362 SAKILRRLISAGCN-INSRTAAGETAAMICARYKHEECLKFL-ASEGADLGLINYAGQCA 419
           S K++  L   G + +N +   G T         H +    L    GA+  L++  G  A
Sbjct: 150 SLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKA 209

Query: 420 NSIAKSS 426
             +A + 
Sbjct: 210 EDVALNE 216

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 8e-04
 Identities = 8/45 (17%), Positives = 13/45 (28%), Gaps = 1/45 (2%)

Query: 589 TPLMLAAKSGH-GSVCQLLISSGAKCDIENARNETALALARENGN 632
            PL  A        V +LL S  +    ++      L  +     
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQA 46

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 70.6 bits (171), Expect = 2e-14
 Identities = 44/246 (17%), Positives = 87/246 (35%), Gaps = 39/246 (15%)

Query: 362 SAKILRRLISAGCNINSRT-AAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCAN 420
           +A+++  L++ G  +N+     GET+  + AR+   +  K L   GAD      +     
Sbjct: 1   TAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGAD----ANSQDNTG 56

Query: 421 SIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDL 480
                +             +R+     ++     +  + +     ++ + + +  AD D+
Sbjct: 57  RTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADI 116

Query: 481 DEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVI 540
           +  D  G +A   AAA  + EA  +LL   AN   Q+   ET                  
Sbjct: 117 NAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDET------------------ 158

Query: 541 LEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHG 600
                            L  AA+ G ++    L+    +   +D     P  +A++  H 
Sbjct: 159 ----------------PLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHH 202

Query: 601 SVCQLL 606
            + +LL
Sbjct: 203 DIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 52.9 bits (125), Expect = 2e-08
 Identities = 39/189 (20%), Positives = 77/189 (40%), Gaps = 1/189 (0%)

Query: 444 NIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAF 503
            +  + + +  + L    +    DA K+L++      + QD  G +    A AA  +  F
Sbjct: 14  ELNATMDKTGETSLHLAARFARADAAKRLLDAGADA-NSQDNTGRTPLHAAVAADAMGVF 72

Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
           ++LL   A       +  T   +       E + + ++    +     ++G  ALH AA 
Sbjct: 73  QILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAA 132

Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETA 623
             + + V+ L+    + +A D    TPL LAA+ G     + L+ + A  +I +  +   
Sbjct: 133 VNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLP 192

Query: 624 LALARENGN 632
             +A E  +
Sbjct: 193 RDVASERLH 201

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 51.3 bits (121), Expect = 7e-08
 Identities = 31/221 (14%), Positives = 65/221 (29%), Gaps = 29/221 (13%)

Query: 195 VVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDI 254
           V+  L+  G + NA      ++ + +LH          A    +    + LL AG   + 
Sbjct: 4   VISDLLAQGAELNATMD---KTGETSLHL---------AARFARADAAKRLLDAGADANS 51

Query: 255 KVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILH--- 311
           +   G          +      +      T       + +  ++      I   +     
Sbjct: 52  QDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIT 111

Query: 312 ----------NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLG 361
                     +G+T +H A   NN  AV +LL    +++       +T L          
Sbjct: 112 ADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKD-ETPLFLAAREGSY- 169

Query: 362 SAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFL 402
             +  + L+    N             + +   H + ++ L
Sbjct: 170 --EASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.7 bits (145), Expect = 7e-11
 Identities = 30/204 (14%), Positives = 72/204 (35%), Gaps = 7/204 (3%)

Query: 353 PIHLAARLGSA----KILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGAD 408
            +HLA          +++R++      +N +    +T   +       E  + L   G D
Sbjct: 5   FLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD 64

Query: 409 LGLINYAGQCANSIAKSSRWTLGFQQAV--VDSIRSGNIIQSSNASRFSPLMFVTQANDV 466
             L ++ G     +A                 +    +I++++N +  + L   +    +
Sbjct: 65  PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYL 124

Query: 467 DALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITL 526
             ++ L+        ++  +G +A  +A    + +   LLL  GA++      G +   L
Sbjct: 125 GIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQL 184

Query: 527 AELNRNGEVLEQVILEYALEEGQK 550
                +  + +  + +  LE  Q 
Sbjct: 185 TWGRPSTRIQQ-QLGQLTLENLQM 207

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (143), Expect = 1e-10
 Identities = 37/244 (15%), Positives = 68/244 (27%), Gaps = 38/244 (15%)

Query: 383 GETAAMICARYKH----EECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVD 438
           G++   +   ++      E ++ +  + A L   N   Q    +A  +      +  +  
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 61

Query: 439 SIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEW-ADVDLDEQDADGFSAAMIAAAA 497
                      N            A+     +          L   + +G +   +A+  
Sbjct: 62  GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH 121

Query: 498 GHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYA 557
           G++    LL+  GA++  Q                                     G  A
Sbjct: 122 GYLGIVELLVSLGADVNAQEPCN---------------------------------GRTA 148

Query: 558 LHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIEN 617
           LH A    + DLV  L+    DVN     GY+P  L        + Q L     +     
Sbjct: 149 LHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQML 208

Query: 618 ARNE 621
             +E
Sbjct: 209 PESE 212

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (128), Expect = 1e-08
 Identities = 29/213 (13%), Positives = 60/213 (28%), Gaps = 4/213 (1%)

Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
           +G + +H AI+         ++         +   +  +  P+HLA      +I   L+ 
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRW--T 429
           AGC+   R   G T   +         +  L        L +       +          
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 120

Query: 430 LGFQQAVVDSIRSG-NIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGF 488
            G+   V   +  G ++      +  + L       + D +  L+     D++     G+
Sbjct: 121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL-KCGADVNRVTYQGY 179

Query: 489 SAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGE 521
           S   +          + L              E
Sbjct: 180 SPYQLTWGRPSTRIQQQLGQLTLENLQMLPESE 212

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (111), Expect = 2e-06
 Identities = 29/190 (15%), Positives = 50/190 (26%), Gaps = 43/190 (22%)

Query: 486 DGFSAAMIAAAAGHVEAF----RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVIL 541
           DG S   +A             R +    A +  QN   +T + LA +    E+ E ++ 
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 542 EYALEEGQKGSAGFY--------------------------------------ALHRAAK 563
                E +                                              LH A+ 
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 120

Query: 564 RGDFDLVH-TLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNET 622
            G   +V   +            +G T L LA    +  +  LL+  GA  +    +  +
Sbjct: 121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYS 180

Query: 623 ALALARENGN 632
              L     +
Sbjct: 181 PYQLTWGRPS 190

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (108), Expect = 4e-06
 Identities = 28/164 (17%), Positives = 50/164 (30%), Gaps = 3/164 (1%)

Query: 245 LLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQH 304
           L  A +    ++         D       G       C   C       + +        
Sbjct: 43  LHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHS 102

Query: 305 ISPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAK 364
           I     +NG T +H A +      VELL++   D         +T    +HLA  L +  
Sbjct: 103 ILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRT---ALHLAVDLQNPD 159

Query: 365 ILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGAD 408
           ++  L+  G ++N  T  G +   +          + L     +
Sbjct: 160 LVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 203

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 5e-10
 Identities = 24/158 (15%), Positives = 49/158 (31%), Gaps = 5/158 (3%)

Query: 353 PIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLI 412
            +  AA  G  + L  L+    N+N++   G TA  +      E   + L          
Sbjct: 4   ELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGA-----N 58

Query: 413 NYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKL 472
                             GF   +   +     +   +     PL    +   +  ++ L
Sbjct: 59  PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 118

Query: 473 IEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAG 510
           ++    ++  ++  G +A  +A   G  E   L+   G
Sbjct: 119 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 5e-08
 Identities = 33/156 (21%), Positives = 51/156 (32%), Gaps = 36/156 (23%)

Query: 489 SAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEG 548
           +    AAA G +E    LL    N+  QN +G TA+    +      + + +L       
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ--VMKLGNPEIARRLLLRGANPD 60

Query: 549 QKGSAGFYALHRAAKRGDFDLVHTLVSRC------------------------------- 577
            K   GF  +H AA+ G  D + TL+                                  
Sbjct: 61  LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 120

Query: 578 ---YDVNASDADGYTPLMLAAKSGHGSVCQLLISSG 610
               +V   +  G T   LA   G   V  L+ ++G
Sbjct: 121 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (105), Expect = 5e-06
 Identities = 21/153 (13%), Positives = 39/153 (25%), Gaps = 5/153 (3%)

Query: 183 ALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVV 242
            L SA  RG +  + +L++  V+ NA +                   +   ++ R  +  
Sbjct: 4   ELASAAARGDLEQLTSLLQNNVNVNAQNG---FGRTALQVMKLGNPEIARRLLLRGANPD 60

Query: 243 RLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLF 302
                    +    R G         E          +  +             +  ++ 
Sbjct: 61  LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 120

Query: 303 QHISPNIL--HNGRTLIHHAILCNNARAVELLL 333
              S      H G T    A L      V L+ 
Sbjct: 121 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 153

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 7e-05
 Identities = 15/154 (9%), Positives = 36/154 (23%), Gaps = 8/154 (5%)

Query: 228 NALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCI---- 283
           N L  A     +  +  LLQ  V ++ +   G  +  +       +   L          
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 284 ----TWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCNNARAVELLLNCAVDK 339
                    +   +              ++            L      + ++       
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 122

Query: 340 EFPVQTYSKTELRPIHLAARLGSAKILRRLISAG 373
              V   +        LA   G  +++  + + G
Sbjct: 123 ASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 11/33 (33%), Positives = 14/33 (42%)

Query: 91  TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGY 123
             L  AA  G+L  +  LL    NVN +   G 
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGR 35

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 3e-09
 Identities = 30/153 (19%), Positives = 49/153 (32%), Gaps = 3/153 (1%)

Query: 456 PLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKL 515
            L       DV  +++L+    V  D  +  G +A  +        A  LL    +    
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQ 64

Query: 516 QNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVS 575
                      A       +   V     +        G   +H A + G   +V  L +
Sbjct: 65  DTSGTSPVHDAARTGFLDTLKVLVEHGADVN--VPDGTGALPIHLAVQEGHTAVVSFLAA 122

Query: 576 RCYDVNASDADGYTPLMLAAKSGHGSVCQLLIS 608
              D++  DA G TPL LA + G   +  +L  
Sbjct: 123 ES-DLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 2e-08
 Identities = 24/156 (15%), Positives = 50/156 (32%), Gaps = 8/156 (5%)

Query: 353 PIHLAARLGSAKILRRLI-SAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGL 411
            +  AA  G  + +RRL+     + ++    G+TA  +         L+ L         
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGA----- 59

Query: 412 INYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKK 471
                  + +         GF   +   +  G  +   + +   P+    Q      +  
Sbjct: 60  SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF 119

Query: 472 LIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLL 507
           L   +D+    +DA G +   +A   G  +   +L 
Sbjct: 120 LAAESDL--HRRDARGLTPLELALQRGAQDLVDILQ 153

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.3 bits (124), Expect = 1e-08
 Identities = 24/141 (17%), Positives = 54/141 (38%), Gaps = 15/141 (10%)

Query: 485 ADGFS---AAMIAAAAGHVEAFRLLLHAGANIKLQ------NKYGETAITLAELNRNGEV 535
           AD  +   +   A     +         G ++  +      ++  ETA+ LA  + +   
Sbjct: 1   ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTS 60

Query: 536 LEQVILEYALEEG----QKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPL 591
           L   I+++ ++      ++   G  ALH      + + +  L+     +  ++  G TPL
Sbjct: 61  LH--IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPL 118

Query: 592 MLAAKSGHGSVCQLLISSGAK 612
            +A +  H    +LL  + + 
Sbjct: 119 DIAKRLKHEHCEELLTQALSG 139

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.1 bits (108), Expect = 2e-06
 Identities = 20/177 (11%), Positives = 40/177 (22%), Gaps = 47/177 (26%)

Query: 347 SKTELRPIHLAARLGSAKILRRLISAGCNINSRTAA------GETAAMICARYKHE---E 397
           +  +L  +  A +      L +  + G ++  +          ETA  +  R        
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 62

Query: 398 CLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPL 457
            + FL     +L      G  A      +      +                        
Sbjct: 63  IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKL----------------------- 99

Query: 458 MFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIK 514
                          +      ++  +  G +   IA    H     LL  A +   
Sbjct: 100 ---------------LLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRF 141

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.8 bits (89), Expect = 6e-04
 Identities = 18/124 (14%), Positives = 32/124 (25%), Gaps = 42/124 (33%)

Query: 551 GSAGFYALHRAAKRGDFDLVHTLVSRCYDVNAS------DADGYTPLMLAAKS---GHGS 601
            +A  ++L  A K  D   +    +   D+              T L LA +S       
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 62

Query: 602 VCQLLISSGA---------------------------------KCDIENARNETALALAR 628
           +   L+ +                                     +I N   ET L +A+
Sbjct: 63  IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK 122

Query: 629 ENGN 632
              +
Sbjct: 123 RLKH 126

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.2 bits (118), Expect = 7e-08
 Identities = 27/155 (17%), Positives = 57/155 (36%), Gaps = 6/155 (3%)

Query: 352 RPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGL 411
           + +  AAR G    +R L++ G         G +   + A+Y H    + L   G     
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS--- 59

Query: 412 INYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKK 471
              A    +        + G    V   ++ G  + + +  + + L + T+ N  + + +
Sbjct: 60  -RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVV-E 117

Query: 472 LIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLL 506
           L+     D+  Q     +A  I+   G+ +   +L
Sbjct: 118 LLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.1 bits (115), Expect = 2e-07
 Identities = 33/152 (21%), Positives = 62/152 (40%), Gaps = 5/152 (3%)

Query: 456 PLMFVTQANDVDALKKLIEW-ADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIK 514
            L+   +A   D ++ L+   A       D  G S   +AA  GH     +LL AG +  
Sbjct: 5   KLLEAARAGQDDEVRILMANGAPFT---TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD 61

Query: 515 LQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLV 574
            + K   T + +A    +  ++E ++   A +   K      ALH A +    ++V  L+
Sbjct: 62  ARTKVDRTPLHMAASEGHANIVEVLLKHGA-DVNAKDMLKMTALHWATEHNHQEVVELLI 120

Query: 575 SRCYDVNASDADGYTPLMLAAKSGHGSVCQLL 606
               DV+       T   ++  +G+  + ++L
Sbjct: 121 KYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.5 bits (98), Expect = 3e-05
 Identities = 39/141 (27%), Positives = 61/141 (43%), Gaps = 2/141 (1%)

Query: 492 MIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKG 551
           + AA AG  +  R+L+  GA     +  G + + LA    +    E ++         + 
Sbjct: 7   LEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGV-SRDART 64

Query: 552 SAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGA 611
                 LH AA  G  ++V  L+    DVNA D    T L  A +  H  V +LLI  GA
Sbjct: 65  KVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGA 124

Query: 612 KCDIENARNETALALARENGN 632
               ++   +TA  ++ +NGN
Sbjct: 125 DVHTQSKFCKTAFDISIDNGN 145

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.8 bits (83), Expect = 0.003
 Identities = 8/32 (25%), Positives = 17/32 (53%)

Query: 586 DGYTPLMLAAKSGHGSVCQLLISSGAKCDIEN 617
           D    L+ AA++G     ++L+++GA    + 
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTTDW 32

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 3e-07
 Identities = 24/127 (18%), Positives = 51/127 (40%), Gaps = 4/127 (3%)

Query: 489 SAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEG 548
           +  + ++  G  +  + +++   +  L N  G TA+  A    + E+++ ++ ++ +   
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLV-QFGVNVN 61

Query: 549 QKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNA-SDADGYTPLML--AAKSGHGSVCQL 605
              S G+  LH AA   +  +   LV     V A + +D  T        + G+    Q 
Sbjct: 62  AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQF 121

Query: 606 LISSGAK 612
           L     K
Sbjct: 122 LYGVQEK 128

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 23/129 (17%), Positives = 47/129 (36%), Gaps = 8/129 (6%)

Query: 388 MICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQ 447
           +  +     + ++ +  E  D  L N  G  A           G  + V   ++ G  + 
Sbjct: 6   LDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHN----AVCAGHTEIVKFLVQFGVNVN 61

Query: 448 SSNASRFSPLMFVTQANDVDALKKLIEW-ADVDLDEQDADGFSAAMIAAAA--GHVEAFR 504
           ++++  ++PL      N+V   K L+E  A V      +D  +AA        G+ +  +
Sbjct: 62  AADSDGWTPLHCAASCNNVQVCKFLVESGAAVF-AMTYSDMQTAADKCEEMEEGYTQCSQ 120

Query: 505 LLLHAGANI 513
            L      +
Sbjct: 121 FLYGVQEKM 129

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 0.003
 Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 365 ILRRLISAGCNINSRT-AAGETAAMIC--ARYKHEECLKFLASEGADLG 410
           + + L+ +G  + + T +  +TAA  C      + +C +FL      +G
Sbjct: 82  VCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMG 130

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 3e-05
 Identities = 37/118 (31%), Positives = 52/118 (44%), Gaps = 1/118 (0%)

Query: 492 MIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKG 551
             AAA G VE  R LL AGAN    N YG   I    +  +  V E ++L  A       
Sbjct: 8   ATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQ-VMMMGSARVAELLLLHGAEPNCADP 66

Query: 552 SAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISS 609
           +     +H AA+ G  D +  L      ++  DA G  P+ LA + GH  V + L ++
Sbjct: 67  ATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA 124

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (81), Expect = 0.004
 Identities = 19/121 (15%), Positives = 32/121 (26%), Gaps = 12/121 (9%)

Query: 228 NALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCA 287
           + L  A    ++  VR LL+AG   +     G     +      RV   L        CA
Sbjct: 5   DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCA 64

Query: 288 VEYFESSGAILHMLFQHISPNILHN------------GRTLIHHAILCNNARAVELLLNC 335
                +           +   ++ +            GR  +  A    +      L   
Sbjct: 65  DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA 124

Query: 336 A 336
           A
Sbjct: 125 A 125

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	758
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.98
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.94
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.94
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.93
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.93
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.93
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.93
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.93
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.92
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.91
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.9
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.89
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.88
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.88
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.88
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.85
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.82

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.7e-53  Score=452.38  Aligned_cols=399  Identities=24%  Similarity=0.324  Sum_probs=369.2

Q ss_pred             chHHHHHHhcCCHHHHHHHHhCCCCCCcchhhhhhccccccccCCCCchhHHHHhcCCHHHHHHHHHcCCCCccccccCc
Q 035705          181 VHALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGA  260 (758)
Q Consensus       181 ~t~L~~A~~~g~~~iv~~Ll~~g~d~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~  260 (758)
                      .||||.||..|+.++|++|+++|+++|..+             ..|.||||+|+..|+.++|++|+++|++++.+     
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d-------------~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~-----   62 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRGASPNVSN-------------VKVETPLHMAARAGHTEVAKYLLQNKAKVNAK-----   62 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCSS-------------SCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCC-----
T ss_pred             CChHHHHHHCcCHHHHHHHHHCCCCCCCCC-------------CCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCC-----
Confidence            489999999999999999999999999988             46999999999999999999999999999876     


Q ss_pred             cccccccchhhhhhccccccccccchhhhhhhchHHHHHHHhhccCCCCCCCCchHHHHHHHcCCHHHHHHHHHccCCCC
Q 035705          261 WSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCNNARAVELLLNCAVDKE  340 (758)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~  340 (758)
                                                                       +..|.||||+|+..|+.+++++|+..+.++.
T Consensus        63 -------------------------------------------------~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~   93 (408)
T d1n11a_          63 -------------------------------------------------AKDDQTPLHCAARIGHTNMVKLLLENNANPN   93 (408)
T ss_dssp             -------------------------------------------------CTTSCCHHHHHHHHTCHHHHHHHHHHTCCTT
T ss_pred             -------------------------------------------------CCCCCCHHHHHHHcCCHHHHHHHHHhhhccc
Confidence                                                             4578899999999999999999999888765


Q ss_pred             CCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHH
Q 035705          341 FPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCAN  420 (758)
Q Consensus       341 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l  420 (758)
                      .    ......+++..+...+...........+...+..+..+.++++.|+..++.+++++|+++|++++..+..|.+||
T Consensus        94 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~L  169 (408)
T d1n11a_          94 L----ATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPL  169 (408)
T ss_dssp             C----CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHH
T ss_pred             c----ccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCcCchHH
Confidence            4    456778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCH
Q 035705          421 SIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHV  500 (758)
Q Consensus       421 ~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~  500 (758)
                      ++|+..    +..+++++|++.|++++..+..|.||+|.++.....+....++.. .......+..+.|||++|+..+..
T Consensus       170 ~~A~~~----~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~t~l~~a~~~~~~  244 (408)
T d1n11a_         170 HVAVHH----NNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQY-GGSANAESVQGVTPLHLAAQEGHA  244 (408)
T ss_dssp             HHHHHT----TCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHc----CCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhc-cccccccCCCCCCHHHHHHHhCcH
Confidence            999654    678999999999999999999999999999999999999999998 677778888999999999999999


Q ss_pred             HHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCC
Q 035705          501 EAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDV  580 (758)
Q Consensus       501 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~  580 (758)
                      ++++++++.+.+.+..+..|.||++.|+..++.+++++|+ +.+.+++..+..+.||||.++..++.++++++++.|+++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll-~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~i  323 (408)
T d1n11a_         245 EMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLI-KHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV  323 (408)
T ss_dssp             HHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH-HHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCT
T ss_pred             hHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHH-HCCCccccccccccccchhhcccCcceeeeeeccccccc
Confidence            9999999999999999999999999999999999999776 477888999999999999999999999999999999999


Q ss_pred             CCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCccccccc
Q 035705          581 NASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHTK  660 (758)
Q Consensus       581 n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~~~~~d~  660 (758)
                      |.+|..|+||||+|++.|+.++|++|+++|||+|.+|++|+||||+|++.|+.++|+.|      +.+.+++.+....++
T Consensus       324 n~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L------~~~~~~~~~~~~~~~  397 (408)
T d1n11a_         324 NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL------KVVTDETSFVLVSDK  397 (408)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHH------HHHCCCCSSCC----
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH------HHHHhcccccccccc
Confidence            99999999999999999999999999999999999999999999999999999988744      577888888877775


Q ss_pred             cC
Q 035705          661 CG  662 (758)
Q Consensus       661 ~g  662 (758)
                      ..
T Consensus       398 ~~  399 (408)
T d1n11a_         398 HR  399 (408)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-51  Score=442.57  Aligned_cols=392  Identities=23%  Similarity=0.302  Sum_probs=309.1

Q ss_pred             hHHHHHHHcCcHHHHHHHHhCCCCCCcccccCcch-hHHhhhChHHHHHHHHhcCCCccccchHHHHHHHcCChhHHHHH
Q 035705           91 TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYAT-TAAVREDHLEILDLLIKAGACQEACEEALLETSYLGQARPAELL  169 (758)
Q Consensus        91 t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~~l-~~A~~~g~~~iv~~Ll~~ga~~~~~~~~l~~A~~~g~~~iv~~L  169 (758)
                      ||||+||..|+.++|++|+++|+++|..|..|.|+ |+|+..|+.++|++|+++|++++.                    
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~--------------------   61 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA--------------------   61 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSC--------------------
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCC--------------------
Confidence            89999999999999999999999999888887764 777777777777777777777653                    


Q ss_pred             HhccCCCCCCCchHHHHHHhcCCHHHHHHHHhCCCCCCcchhhhhhccccccccCCCCchhHHHHhcCCHHHHHHHHHcC
Q 035705          170 MATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAG  249 (758)
Q Consensus       170 l~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~d~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g  249 (758)
                            .+..|.|||++|+..|+.+++++|++.+.++....             ....+++..+...+...........+
T Consensus        62 ------~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (408)
T d1n11a_          62 ------KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLAT-------------TAGHTPLHIAAREGHVETVLALLEKE  122 (408)
T ss_dssp             ------CCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCC-------------TTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             ------CCCCCCCHHHHHHHcCCHHHHHHHHHhhhcccccc-------------ccccchhhhhhhhccccccccccccc
Confidence                  44556777777777777777777777766655544             23566777777777666666666665


Q ss_pred             CCCccccccCccccccccchhhhhhccccccccccchhhhhhhchHHHHHHHhhccCCCCCCCCchHHHHHHHcCCHHHH
Q 035705          250 VKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCNNARAV  329 (758)
Q Consensus       250 a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~g~t~L~~A~~~g~~~~v  329 (758)
                      ...+..                                                      +..+.++++.|+..++.+++
T Consensus       123 ~~~~~~------------------------------------------------------~~~~~~~l~~a~~~~~~~~v  148 (408)
T d1n11a_         123 ASQACM------------------------------------------------------TKKGFTPLHVAAKYGKVRVA  148 (408)
T ss_dssp             CCSCCC------------------------------------------------------CTTSCCHHHHHHHTTCHHHH
T ss_pred             cccccc------------------------------------------------------ccccchHHHHHHHcCCHHHH
Confidence            555443                                                      33556677777777777777


Q ss_pred             HHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC
Q 035705          330 ELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADL  409 (758)
Q Consensus       330 ~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~  409 (758)
                      ++|+++|++++.    .+..|.+|||+|+..|+.+++++|+++|++++..+..|.||+|.++.....++...|+..+...
T Consensus       149 ~~ll~~~~~~~~----~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~  224 (408)
T d1n11a_         149 ELLLERDAHPNA----AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA  224 (408)
T ss_dssp             HHHHHTTCCTTC----CCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHcCCCCCc----CCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccc
Confidence            777777776654    4566777777777777777777777777777777777777777777777777777776665554


Q ss_pred             CCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCc
Q 035705          410 GLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFS  489 (758)
Q Consensus       410 ~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t  489 (758)
                      ..                                     .+..+.|||+.|+..++.++++++++. +...+..+..|.|
T Consensus       225 ~~-------------------------------------~~~~~~t~l~~a~~~~~~~~~~~~~~~-~~~~~~~~~~g~~  266 (408)
T d1n11a_         225 NA-------------------------------------ESVQGVTPLHLAAQEGHAEMVALLLSK-QANGNLGNKSGLT  266 (408)
T ss_dssp             TC-------------------------------------CCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTCCC
T ss_pred             cc-------------------------------------cCCCCCCHHHHHHHhCcHhHhhhhhcc-ccccccccCCCCC
Confidence            43                                     344455788888899999999999887 7888888999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHH
Q 035705          490 AAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDL  569 (758)
Q Consensus       490 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~  569 (758)
                      ||+.|+..++.+++++|+++|++++..+..+.||||.++..++.+++++++. .+.+++.+|..|+||||+|++.|+.++
T Consensus       267 ~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~-~g~~in~~d~~G~T~Lh~A~~~g~~~i  345 (408)
T d1n11a_         267 PLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ-HQADVNAKTKLGYSPLHQAAQQGHTDI  345 (408)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             hhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeecc-ccccccccCCCCCCHHHHHHHcCCHHH
Confidence            9999999999999999999999999999999999999999999999987665 578889999999999999999999999


Q ss_pred             HHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHH---hCCCCCCCCCC
Q 035705          570 VHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLI---SSGAKCDIENA  618 (758)
Q Consensus       570 v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll---~~gad~~~~d~  618 (758)
                      |++|+++|+|+|.+|.+|+||||+|++.|+.++|++|.   +.+++....++
T Consensus       346 v~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L~~~~~~~~~~~~~~~  397 (408)
T d1n11a_         346 VTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDK  397 (408)
T ss_dssp             HHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHHCCCCSSCC----
T ss_pred             HHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHHHhcccccccccc
Confidence            99999999999999999999999999999999998664   46666665554

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-35  Score=297.80  Aligned_cols=269  Identities=24%  Similarity=0.294  Sum_probs=245.6

Q ss_pred             CchHHHHHHhcCCHHHHHHHHhCCCCCCcchhhhhhccccccccCCCCchhHHHHhcCCHHHHHHHHHcCCCCccccccC
Q 035705          180 SVHALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMG  259 (758)
Q Consensus       180 ~~t~L~~A~~~g~~~iv~~Ll~~g~d~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g  259 (758)
                      +.|+|+.|+..|+.++|++|+++|+|+|..+.            ..|.||||+|+..|+.+++++|++.+..+...    
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~------------~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~----   68 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEE------------EGGWTPLHNAVQMSREDIVELLLRHGADPVLR----   68 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCT------------TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCCCCcCccCC------------CCCCCHHHHHHHcCCHHHhhhhcccccccccc----
Confidence            46899999999999999999999999998764            35999999999999999999999999887654    


Q ss_pred             ccccccccchhhhhhccccccccccchhhhhhhchHHHHHHHhhccCCCCCCCCchHHHHHHHcCCHHHHHHHHHccCCC
Q 035705          260 AWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCNNARAVELLLNCAVDK  339 (758)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~  339 (758)
                                                                        ...+.+|.+.|+..+..+...++++...+.
T Consensus        69 --------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (285)
T d1wdya_          69 --------------------------------------------------KKNGATPFLLAAIAGSVKLLKLFLSKGADV   98 (285)
T ss_dssp             --------------------------------------------------CTTCCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             --------------------------------------------------ccccchhhHHHhhcCCccccchhhhhcccc
Confidence                                                              345678999999999999999999987665


Q ss_pred             CCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC----------CCCCCcHHHHHHHcCCHHHHHHHHHC-CCC
Q 035705          340 EFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSR----------TAAGETAAMICARYKHEECLKFLASE-GAD  408 (758)
Q Consensus       340 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----------~~~g~t~L~~A~~~g~~~iv~~Ll~~-g~~  408 (758)
                      ..    .+..+.|+++.|+..++...++.+++...+++..          +..|.||||+|++.|+.+++++|+++ |++
T Consensus        99 ~~----~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~  174 (285)
T d1wdya_          99 NE----CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD  174 (285)
T ss_dssp             TC----BCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCC
T ss_pred             cc----cccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCC
Confidence            43    5788999999999999999999999987776643          34689999999999999999999975 899


Q ss_pred             CCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCC
Q 035705          409 LGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGF  488 (758)
Q Consensus       409 ~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~  488 (758)
                      ++..+..+.++..............+++++|++.|++++.++..|.||||.|++.|+.+++++|++..|++++.+|.+|.
T Consensus       175 i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~  254 (285)
T d1wdya_         175 VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGK  254 (285)
T ss_dssp             TTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSC
T ss_pred             cccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCC
Confidence            99999999999999988888888999999999999999999999999999999999999999999987999999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhCCCCCCcCCC
Q 035705          489 SAAMIAAAAGHVEAFRLLLHAGANIKLQNK  518 (758)
Q Consensus       489 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~  518 (758)
                      ||||+|++.|+.++|++|+++|||+|.+|.
T Consensus       255 TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         255 TALLLAVELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCcccC
Confidence            999999999999999999999999998874

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-35  Score=299.30  Aligned_cols=274  Identities=29%  Similarity=0.399  Sum_probs=209.2

Q ss_pred             CCchhHHHHhcCCHHHHHHHHHcCCCCccccccCccccccccchhhhhhccccccccccchhhhhhhchHHHHHHHhhcc
Q 035705          226 DCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHI  305 (758)
Q Consensus       226 ~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  305 (758)
                      +.|+|+.|++.|+.++|++|+++|++++.++                                                 
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~-------------------------------------------------   35 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQE-------------------------------------------------   35 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCC-------------------------------------------------
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCCCCcCccC-------------------------------------------------
Confidence            6788999999999999999999999988652                                                 


Q ss_pred             CCCCCCCCchHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCc
Q 035705          306 SPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGET  385 (758)
Q Consensus       306 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t  385 (758)
                          +..|.||||+|+..|+.+++++|++.+.....    .+..+.+|.+.|+..+..+...+++++..+....+..+.|
T Consensus        36 ----~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (285)
T d1wdya_          36 ----EEGGWTPLHNAVQMSREDIVELLLRHGADPVL----RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFT  107 (285)
T ss_dssp             ----TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC----CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCB
T ss_pred             ----CCCCCCHHHHHHHcCCHHHhhhhccccccccc----cccccchhhHHHhhcCCccccchhhhhcccccccccCCCc
Confidence                34688999999999999999999998887665    5677888999999999999999999988887778888999


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCC
Q 035705          386 AAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQAND  465 (758)
Q Consensus       386 ~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~  465 (758)
                      +++.|+..++..+++.+++...+++........                           .......|.||||+|+++|+
T Consensus       108 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~g~t~L~~A~~~~~  160 (285)
T d1wdya_         108 AFMEAAVYGKVKALKFLYKRGANVNLRRKTKED---------------------------QERLRKGGATALMDAAEKGH  160 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHH---------------------------HHHTTCCCCCHHHHHHHHTC
T ss_pred             hhHHHHHhcchhhhhhhhhhcccccccccchhh---------------------------hhhhcccCchHHHHHHHcCC
Confidence            999999999999999999887776654333211                           11233456778888888888


Q ss_pred             HHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcC----CHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHH
Q 035705          466 VDALKKLIEWADVDLDEQDADGFSAAMIAAAAG----HVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVIL  541 (758)
Q Consensus       466 ~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g----~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~  541 (758)
                      .+++++|+++.+++++..+..|.++++.+...+    ..+++++|+++|++++.++..|.|                   
T Consensus       161 ~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t-------------------  221 (285)
T d1wdya_         161 VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKT-------------------  221 (285)
T ss_dssp             HHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCC-------------------
T ss_pred             HHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCC-------------------
Confidence            888888887767788888777777776655432    345777777777777766655555                   


Q ss_pred             hhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCC
Q 035705          542 EYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSR-CYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIEN  617 (758)
Q Consensus       542 ~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d  617 (758)
                                     |||.|++.|+.+++++|+++ |+++|.+|.+|+||||+|++.|+.++|++||++|||+|++|
T Consensus       222 ---------------~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d  283 (285)
T d1wdya_         222 ---------------PLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD  283 (285)
T ss_dssp             ---------------HHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred             ---------------ccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccc
Confidence                           55555556666667667653 67777777777777777777777777777777777777766

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.7e-36  Score=302.03  Aligned_cols=247  Identities=22%  Similarity=0.272  Sum_probs=173.3

Q ss_pred             CCCCCCchHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHH
Q 035705          308 NILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAA  387 (758)
Q Consensus       308 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L  387 (758)
                      ..+.+|.||||+||..|+.+++++|++.|+++.. ++.++..|.||||+|+..|+.+++++|+++|++++..|.+|.|||
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~-i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL   82 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEY-LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL   82 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGG-GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCccc-ccCcCCCCCCccchHHhhcccccccccccccccccccccccchhh
Confidence            3578999999999999999999999999988654 455788999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHH
Q 035705          388 MICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVD  467 (758)
Q Consensus       388 ~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~  467 (758)
                      |+|+..++.+++++|++.+...........   ......                     ........++..........
T Consensus        83 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~---~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~  138 (255)
T d1oy3d_          83 HLACRVRAHTCACVLLQPRPSHPRDASDTY---LTQSQD---------------------CTPDTSHAPAAVDSQPNPEN  138 (255)
T ss_dssp             HHHTTTTCHHHHHHHSSSCCSSCCCC------------------------------------------------------
T ss_pred             hhhhccCchHHHHHHHhhccchhcccchhh---hhHHhh---------------------hcccchHHHHHHHhhcchhH
Confidence            999999999999999987654332110000   000000                     00000000111111111111


Q ss_pred             HHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhcccc
Q 035705          468 ALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEE  547 (758)
Q Consensus       468 ~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~  547 (758)
                      ....+....+.+++.++..|.||||+|+..++.+++++|++.+++++                                 
T Consensus       139 ~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~---------------------------------  185 (255)
T d1oy3d_         139 EEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLN---------------------------------  185 (255)
T ss_dssp             -----CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT---------------------------------
T ss_pred             HHHHHhhhcCcccccccccCcccccccccccccccccchhccccccc---------------------------------
Confidence            11111111234445555555555555555555555555555554443                                 


Q ss_pred             CCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCC
Q 035705          548 GQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAK  612 (758)
Q Consensus       548 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad  612 (758)
                      ...+..|.||||+|++.|+.+++++|+++|+++|.+|..|+||||+|+..++.+++++|+++||+
T Consensus       186 ~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         186 KPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             ccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            33455778889999999999999999999999999999999999999999999999999999997

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.3e-35  Score=293.79  Aligned_cols=242  Identities=19%  Similarity=0.166  Sum_probs=157.2

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHH
Q 035705          346 YSKTELRPIHLAARLGSAKILRRLISAGCN---INSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSI  422 (758)
Q Consensus       346 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~  422 (758)
                      .+++|.||||+||+.|+.+++++|+++|++   ++.+|..|+||||+|+..|+.+++++|+++|++++.           
T Consensus         5 i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~-----------   73 (255)
T d1oy3d_           5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLV-----------   73 (255)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSC-----------
T ss_pred             CCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccc-----------
Confidence            456667777777777777777777766665   445556666666666666666666666666555432           


Q ss_pred             HHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHH
Q 035705          423 AKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEA  502 (758)
Q Consensus       423 a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~  502 (758)
                                                .+..|.||||+|+..++.+++++|++.. .....   .....+.........  
T Consensus        74 --------------------------~d~~g~tpL~~A~~~~~~~~~~~Ll~~~-~~~~~---~~~~~~~~~~~~~~~--  121 (255)
T d1oy3d_          74 --------------------------AERGGHTALHLACRVRAHTCACVLLQPR-PSHPR---DASDTYLTQSQDCTP--  121 (255)
T ss_dssp             --------------------------CCTTSCCHHHHHTTTTCHHHHHHHSSSC-CSSCC---CC---------------
T ss_pred             --------------------------cccccchhhhhhhccCchHHHHHHHhhc-cchhc---ccchhhhhHHhhhcc--
Confidence                                      2345566666666666666666665542 11110   000000000000000  


Q ss_pred             HHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCC
Q 035705          503 FRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNA  582 (758)
Q Consensus       503 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~  582 (758)
                                     .....++..............+....+..++..+..|.||||+|+..++.+++++|++++++++.
T Consensus       122 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~  186 (255)
T d1oy3d_         122 ---------------DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNK  186 (255)
T ss_dssp             -------------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTC
T ss_pred             ---------------cchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhcccccccc
Confidence                           00011111111111222233344556677888999999999999999999999999999999886


Q ss_pred             C-CCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCc
Q 035705          583 S-DADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTY  654 (758)
Q Consensus       583 ~-d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~  654 (758)
                      . +..|.||||+|++.|+.+++++|+++|+|++.+|..|+||||+|+.+++.+         ++++|+++||+
T Consensus       187 ~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~---------i~~~Ll~~Ga~  250 (255)
T d1oy3d_         187 PEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPI---------LARLLRAHGAP  250 (255)
T ss_dssp             CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHH---------HHHHHHHTTCC
T ss_pred             cccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHH---------HHHHHHHcCCC
Confidence            4 678999999999999999999999999999999999999999999999986         67789999997

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.3e-35  Score=282.23  Aligned_cols=218  Identities=22%  Similarity=0.259  Sum_probs=137.7

Q ss_pred             CcHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccc
Q 035705          351 LRPIHLAARLGSAKILRRLIS-AGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWT  429 (758)
Q Consensus       351 ~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~  429 (758)
                      .++|+.+|..|+.+.|+.+++ .+.+++.+|..|+||||+|+..|+.+++++|++.+.+....+..              
T Consensus         4 ~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~--------------   69 (223)
T d1uoha_           4 NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA--------------   69 (223)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTT--------------
T ss_pred             HHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhccccccccccccccccccc--------------
Confidence            467777778888777765554 46677777777888888888888888888777776655443332              


Q ss_pred             cchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 035705          430 LGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHA  509 (758)
Q Consensus       430 ~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  509 (758)
                                             +.++++.++..++.+++++|+++ +++++.+|..|.||||+|+..|+.+++++|+++
T Consensus        70 -----------------------~~~~~~~~~~~~~~~i~~~Ll~~-~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~  125 (223)
T d1uoha_          70 -----------------------GWSPLHIAASAGRDEIVKALLGK-GAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEG  125 (223)
T ss_dssp             -----------------------CCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             -----------------------ccccccccccccccchhHHHhcc-CceeEeeCCCCCchhhHHHHcCCHHHHHHHHHC
Confidence                                   23566666777777777777776 677777777788888888888888888888888


Q ss_pred             CCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCc
Q 035705          510 GANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYT  589 (758)
Q Consensus       510 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t  589 (758)
                      |++++.++..|.||||+|+..++.+++++| ...+.+++..|..|+||||+|+..|+.++|++|+++|+|++.+|..|+|
T Consensus       126 g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L-~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~t  204 (223)
T d1uoha_         126 GANPDAKDHYEATAMHRAAAKGNLKMIHIL-LYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKT  204 (223)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH-HHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCC
T ss_pred             CCCCCCcCCCCCccchhhhhcCCcchhhhh-ccccceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCC
Confidence            877777766666665555555544444322 2333344444444455555555555555555555555555555555555


Q ss_pred             HHHHHHHcCcHHHHHHHHh
Q 035705          590 PLMLAAKSGHGSVCQLLIS  608 (758)
Q Consensus       590 pL~~A~~~~~~~iv~~Ll~  608 (758)
                      |||+| ..|+.+++++||+
T Consensus       205 pl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         205 PLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             HHHHC-CTTHHHHHHHHHC
T ss_pred             HHHHH-HCCCHHHHhcccC
Confidence            55554 2355555555543

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-34  Score=279.25  Aligned_cols=216  Identities=26%  Similarity=0.338  Sum_probs=193.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHH
Q 035705          383 GETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQ  462 (758)
Q Consensus       383 g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~  462 (758)
                      ..+.|+.++..|+.+.++.+++.                                    .+..++.+|..|+||||+|+.
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~------------------------------------~~~~~~~~D~~G~TpLh~Aa~   46 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILA------------------------------------DKSLATRTDQDSRTALHWACS   46 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHH------------------------------------CGGGGGCCCTTSCCHHHHHHH
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHh------------------------------------CCCcCcCcCCCCCCHHHHHHH
Confidence            35778888888888887666543                                    222344556667789999999


Q ss_pred             cCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHh
Q 035705          463 ANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILE  542 (758)
Q Consensus       463 ~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~  542 (758)
                      .|+.++++++++. +.+....+..+.++++.++..++.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+ +
T Consensus        47 ~g~~e~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll-~  124 (223)
T d1uoha_          47 AGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL-E  124 (223)
T ss_dssp             HTCHHHHHHHHHH-TCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH-H
T ss_pred             hhhhccccccccc-ccccccccccccccccccccccccchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHH-H
Confidence            9999999999998 6888888899999999999999999999999999999999999999999999999999999887 5


Q ss_pred             hccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCc
Q 035705          543 YALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNET  622 (758)
Q Consensus       543 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t  622 (758)
                      .+.+++..+..|.||||+|+..++.+++++|++.|.++|.+|..|+||||+|+..|+.++|++|+++|+|++.+|..|+|
T Consensus       125 ~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~t  204 (223)
T d1uoha_         125 GGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKT  204 (223)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCC
T ss_pred             CCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCC
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCChhhHH
Q 035705          623 ALALARENGNGNEAE  637 (758)
Q Consensus       623 ~L~~A~~~~~~~~~~  637 (758)
                      |||+|. .|+.++++
T Consensus       205 pl~~A~-~~~~~i~~  218 (223)
T d1uoha_         205 PLQVAK-GGLGLILK  218 (223)
T ss_dssp             HHHHCC-TTHHHHHH
T ss_pred             HHHHHH-CCCHHHHh
Confidence            999984 56665444

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=7.8e-35  Score=293.84  Aligned_cols=258  Identities=24%  Similarity=0.267  Sum_probs=215.0

Q ss_pred             CcHHHHHHH-cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccc
Q 035705          351 LRPIHLAAR-LGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWT  429 (758)
Q Consensus       351 ~t~L~~A~~-~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~  429 (758)
                      .||||+++. .|+.++++.|.+.++++... .+|+||||+|+..|+.++|++|+.+                        
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~~n~~~~-~~g~T~Lh~A~~~g~~~~v~~Ll~~------------------------   55 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRESVNIIDP-RHNRTVLHWIASNSSAEKSEDLIVH------------------------   55 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTTTTTCCC-SSCCCHHHHHHCTTCCSCCTTHHHH------------------------
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcCCCcCCC-CCCccHHHHHHHcCCHHHHHHHHhc------------------------
Confidence            378885554 46677777777777665432 3589999999999999999888764                        


Q ss_pred             cchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 035705          430 LGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHA  509 (758)
Q Consensus       430 ~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  509 (758)
                           ..+.+++.|+++|.+|.+|.||||+|+..|+.+++++|+++ |++++.++..|.|||++|+..++.++++++...
T Consensus        56 -----~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~-Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~  129 (277)
T d2fo1e1          56 -----EAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKA-GADPTIYNKSERSALHQAAANRDFGMMVYMLNS  129 (277)
T ss_dssp             -----HHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTS
T ss_pred             -----chhHHHHcCCCccccCCCCCeeecccccccccccccccccc-ccccccccccccccccchhhhcchhhhhhhhhc
Confidence                 23566778888888888899999999999999999999998 899999999999999999999999999999866


Q ss_pred             C---CCCCcCCCCCCcHHHHHHHcCChhHHHHHH---Hh-------hccccCCCCCCCchHHHHHHHcCCHHHHHHHH-h
Q 035705          510 G---ANIKLQNKYGETAITLAELNRNGEVLEQVI---LE-------YALEEGQKGSAGFYALHRAAKRGDFDLVHTLV-S  575 (758)
Q Consensus       510 g---~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll---~~-------~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~  575 (758)
                      +   ..++..+..+.++.+.+...+..+.+....   ..       .....+..+..|+||||+++..++.+++++++ .
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~  209 (277)
T d2fo1e1         130 TKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGE  209 (277)
T ss_dssp             HHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHH
T ss_pred             ccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCcccccccccccccccccccc
Confidence            4   456777888999999998887666443322   11       12334456678999999999999999998755 6


Q ss_pred             cCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHH
Q 035705          576 RCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENV  639 (758)
Q Consensus       576 ~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~l  639 (758)
                      .+.+++.+|..|+||||+|++.|+.++|++|+++|+|++.+|..|+||||+|+++|+.++++.|
T Consensus       210 ~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~iv~lL  273 (277)
T d2fo1e1         210 KGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF  273 (277)
T ss_dssp             SCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            7899999999999999999999999999999999999999999999999999999999866644

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.9e-34  Score=277.98  Aligned_cols=223  Identities=17%  Similarity=0.254  Sum_probs=185.8

Q ss_pred             cHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhccccc
Q 035705          352 RPIHLAARLGSAKILRRLISA-GCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTL  430 (758)
Q Consensus       352 t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~  430 (758)
                      ||||+||..|+.++++.|++. +.+++.+|.+|+||||+|+..|+.+++++|+++|++++..+.                
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~----------------   65 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDY----------------   65 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGC----------------
T ss_pred             HhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccc----------------
Confidence            688888888888888877774 567888888888888888888888888888888887765432                


Q ss_pred             chHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCC--CCcccCCCCCcHHHHHHHcCCHHHHHHHHh
Q 035705          431 GFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADV--DLDEQDADGFSAAMIAAAAGHVEAFRLLLH  508 (758)
Q Consensus       431 ~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~--~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  508 (758)
                                        .+..|.+|+++++..+..++++.++.. +.  +....+..+.||++.++..++.+++++|++
T Consensus        66 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~  126 (229)
T d1ixva_          66 ------------------PDDSGWTPFHIACSVGNLEVVKSLYDR-PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE  126 (229)
T ss_dssp             ------------------CCTTSCCHHHHHHHHTCHHHHHHHHSS-SSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             ------------------ccccccccccccccccccccccccccc-cccccccccccccccccccccccchhhhhhhhhh
Confidence                              233456777788888888888877766 33  344566778899999999999999999999


Q ss_pred             CCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHh-cCCCCCCCCCCC
Q 035705          509 AGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVS-RCYDVNASDADG  587 (758)
Q Consensus       509 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~n~~d~~g  587 (758)
                      .|.+.+..+..|+||||+|+..|+.++++.|+.....+++..|..|+||||+|+..|+.++|++|++ .|+|++.+|..|
T Consensus       127 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g  206 (229)
T d1ixva_         127 NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG  206 (229)
T ss_dssp             TTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTS
T ss_pred             hcccccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCC
Confidence            9999888889999999999999999999988887778888889999999999999999999999997 599999999999


Q ss_pred             CcHHHHHHHcCcHHHHHHHHhCCCC
Q 035705          588 YTPLMLAAKSGHGSVCQLLISSGAK  612 (758)
Q Consensus       588 ~tpL~~A~~~~~~~iv~~Ll~~gad  612 (758)
                      +||||+|+   +.+++++|+++|+|
T Consensus       207 ~t~l~~A~---~~~~~~~Ll~~g~d  228 (229)
T d1ixva_         207 AKAEDVAL---NEQVKKFFLNNVVD  228 (229)
T ss_dssp             CCTGGGCS---CHHHHHHHHHHCCC
T ss_pred             CCHHHHHh---hHHHHHHHHHcCCC
Confidence            99999998   45899999999987

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=2.5e-34  Score=292.37  Aligned_cols=260  Identities=24%  Similarity=0.314  Sum_probs=202.8

Q ss_pred             CCHHHHHHHHHccCCCCCCcccCC-----CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 035705          324 NNARAVELLLNCAVDKEFPVQTYS-----KTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEEC  398 (758)
Q Consensus       324 g~~~~v~~Ll~~g~~~~~~~~~~~-----~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~i  398 (758)
                      ...+.++.+.....+.+.+.....     ..+.|||+.||..|+.++|++||++|+++|..|.+|.||||+|+..|+.++
T Consensus         9 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~ei   88 (291)
T d1s70b_           9 KRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDM   88 (291)
T ss_dssp             HHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHH
T ss_pred             hhHHHHHHHHhCcccccCchhhccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCcee
Confidence            344556666655544443322221     234588999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCC
Q 035705          399 LKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADV  478 (758)
Q Consensus       399 v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~  478 (758)
                      +++|+++|++....+..+                                     .+||+.++..++.++++.|+++ +.
T Consensus        89 v~~Ll~~~~~~~~~~~~~-------------------------------------~~~L~~a~~~~~~~~~~~l~~~-~~  130 (291)
T d1s70b_          89 VKFLVENGANINQPDNEG-------------------------------------WIPLHAAASCGYLDIAEYLISQ-GA  130 (291)
T ss_dssp             HHHHHHTTCCTTCCCTTS-------------------------------------CCHHHHHHHHTCHHHHHHHHHT-TC
T ss_pred             eeeecccccccccccccc-------------------------------------cccccccccccccchhhccccc-Cc
Confidence            999999988766554443                                     4677777888888888888887 67


Q ss_pred             CCcccCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchH
Q 035705          479 DLDEQDADGFSAAMIAAAAGHVEAFRLLLHA-GANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYA  557 (758)
Q Consensus       479 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~  557 (758)
                      ..+..+..+.+|+++|+..+..+.++.++.. +.++......+..+..        ......+..........+..|.||
T Consensus       131 ~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~g~t~  202 (291)
T d1s70b_         131 HVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML--------RDARQWLNSGHINDVRHAKSGGTA  202 (291)
T ss_dssp             CTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------HHHHHHHHHTCCCCCCCTTTCCCH
T ss_pred             ccccccccCccccccccccccchhcccccccccccccccccccccccc--------ccchhhhcccccccccccCCCCCh
Confidence            8888888888888888888888888888754 4333222211111111        112233444555556677899999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHH
Q 035705          558 LHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARE  629 (758)
Q Consensus       558 L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~  629 (758)
                      ||.|+..|+.+++++|++.|+++|.+|..|+||||+|+..|+.++|++|+++|||++.+|..|+||||+|++
T Consensus       203 L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         203 LHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             HHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS
T ss_pred             hhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999974

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=2.1e-34  Score=290.64  Aligned_cols=253  Identities=21%  Similarity=0.262  Sum_probs=204.2

Q ss_pred             chHHHHHHH-cCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHH--------HHcCCCCCCCCCCCC
Q 035705          314 RTLIHHAIL-CNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRL--------ISAGCNINSRTAAGE  384 (758)
Q Consensus       314 ~t~L~~A~~-~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L--------l~~g~~~~~~~~~g~  384 (758)
                      .||||.+++ .|+.++++.|.+.+++..     ....|+||||+||..|+.++|++|        ++.|+++|.+|.+|+
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~~n~~-----~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~   75 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRESVNII-----DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDEN   75 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTTTTTC-----CCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSC
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcCCCcC-----CCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCC
Confidence            378886554 467777777777766643     234699999999999999988776        567999999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcC
Q 035705          385 TAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQAN  464 (758)
Q Consensus       385 t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~  464 (758)
                      ||||+|+..|+.++|++|+++|++++.++..|.|                                     ||+.|+..+
T Consensus        76 TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t-------------------------------------~l~~a~~~~  118 (277)
T d2fo1e1          76 TPLMLAVLARRRRLVAYLMKAGADPTIYNKSERS-------------------------------------ALHQAAANR  118 (277)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCC-------------------------------------HHHHHHHTT
T ss_pred             eeeccccccccccccccccccccccccccccccc-------------------------------------cccchhhhc
Confidence            9999999999999999999999998887777665                                     555556666


Q ss_pred             CHHHHHHHHHhc--CCCCcccCCCCCcHHHHHHHcCCHH---HHHHHHhCCC--------CCCcCCCCCCcHHHHHHHcC
Q 035705          465 DVDALKKLIEWA--DVDLDEQDADGFSAAMIAAAAGHVE---AFRLLLHAGA--------NIKLQNKYGETAITLAELNR  531 (758)
Q Consensus       465 ~~~~v~~Ll~~~--~~~~~~~~~~g~t~L~~A~~~g~~~---~v~~Ll~~g~--------~~~~~~~~g~t~L~~A~~~~  531 (758)
                      +.++++++....  ...++..+..+.++.+.+...+..+   .++.+.+...        ..+..+..|.||||+++..+
T Consensus       119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~  198 (277)
T d2fo1e1         119 DFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVS  198 (277)
T ss_dssp             CHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSC
T ss_pred             chhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccc
Confidence            666666665431  1345566677777777777765433   3334433322        23455678999999999999


Q ss_pred             ChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHh
Q 035705          532 NGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLIS  608 (758)
Q Consensus       532 ~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~  608 (758)
                      +.++++.++...+.+.+..|..|+||||+|++.|+.++|++|+++|+|+|.+|..|+||||+|++.|+.++|++|++
T Consensus       199 ~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         199 NMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             CHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             cccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999986

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.7e-32  Score=264.83  Aligned_cols=223  Identities=19%  Similarity=0.141  Sum_probs=195.1

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcc-CCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC---CCCCCCCcHHHH
Q 035705          314 RTLIHHAILCNNARAVELLLNCA-VDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNIN---SRTAAGETAAMI  389 (758)
Q Consensus       314 ~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~~~g~t~L~~  389 (758)
                      +||||+||..|+.++|+.|++.+ .+++    .+|.+|+||||+|+..|+.+++++|+++|++++   ..+..|.+|+++
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~----~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~   76 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLL----QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHI   76 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTT----CCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCccc----ccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccc
Confidence            48999999999999999999854 4444    478999999999999999999999999999986   456789999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHH
Q 035705          390 CARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDAL  469 (758)
Q Consensus       390 A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v  469 (758)
                      ++..+..++++.++..+...+..                                   ..+..+.|+++.++..++.+++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~l~~~~~~~~~~~~  121 (229)
T d1ixva_          77 ACSVGNLEVVKSLYDRPLKPDLN-----------------------------------KITNQGVTCLHLAVGKKWFEVS  121 (229)
T ss_dssp             HHHHTCHHHHHHHHSSSSCCCTT-----------------------------------CCCTTSCCHHHHHHHTTCHHHH
T ss_pred             ccccccccccccccccccccccc-----------------------------------ccccccccccccccccchhhhh
Confidence            99999999999999987765432                                   2234456788888999999999


Q ss_pred             HHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCC-CCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccC
Q 035705          470 KKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAG-ANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEG  548 (758)
Q Consensus       470 ~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~  548 (758)
                      +.|++. +.+++.++..|.||||+|+..|+.+++++|++.| .+++.+|..|+||||+|+..|+.+++++|+.+.|.+++
T Consensus       122 ~~l~~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~  200 (229)
T d1ixva_         122 QFLIEN-GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD  200 (229)
T ss_dssp             HHHHHT-TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSC
T ss_pred             hhhhhh-cccccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCC
Confidence            999987 7888888999999999999999999999999886 67888999999999999999999999999988899999


Q ss_pred             CCCCCCchHHHHHHHcCCHHHHHHHHhcCCC
Q 035705          549 QKGSAGFYALHRAAKRGDFDLVHTLVSRCYD  579 (758)
Q Consensus       549 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~  579 (758)
                      ..|..|+||||+|+.   .+++++|+++|+|
T Consensus       201 ~~d~~g~t~l~~A~~---~~~~~~Ll~~g~d  228 (229)
T d1ixva_         201 LVDNKGAKAEDVALN---EQVKKFFLNNVVD  228 (229)
T ss_dssp             CCCTTSCCTGGGCSC---HHHHHHHHHHCCC
T ss_pred             CcCCCCCCHHHHHhh---HHHHHHHHHcCCC
Confidence            999999999999874   5899999999987

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.98  E-value=1.4e-31  Score=271.84  Aligned_cols=258  Identities=21%  Similarity=0.212  Sum_probs=213.9

Q ss_pred             HcCCHHHHHHHHHcCCCCCCC---------CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccc
Q 035705          359 RLGSAKILRRLISAGCNINSR---------TAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWT  429 (758)
Q Consensus       359 ~~g~~~~v~~Ll~~g~~~~~~---------~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~  429 (758)
                      +....+-++.+.....+.+..         +..+.|||+.|+..|+.++|++|+++|++++..|..|.            
T Consensus         7 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~------------   74 (291)
T d1s70b_           7 KQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGL------------   74 (291)
T ss_dssp             HHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCC------------
T ss_pred             hHhhHHHHHHHHhCcccccCchhhccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCC------------
Confidence            334456666666654443321         12346999999999999999999999998887665554            


Q ss_pred             cchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 035705          430 LGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHA  509 (758)
Q Consensus       430 ~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  509 (758)
                                               ||||+|+..|+.+++++|+++ +.+.+..+..+.+||+.++..++.++++.|+++
T Consensus        75 -------------------------T~L~~A~~~g~~eiv~~Ll~~-~~~~~~~~~~~~~~L~~a~~~~~~~~~~~l~~~  128 (291)
T d1s70b_          75 -------------------------TALHQACIDDNVDMVKFLVEN-GANINQPDNEGWIPLHAAASCGYLDIAEYLISQ  128 (291)
T ss_dssp             -------------------------BHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             -------------------------cHHHHHHhcCCceeeeeeccc-ccccccccccccccccccccccccchhhccccc
Confidence                                     688888999999999999998 789999999999999999999999999999999


Q ss_pred             CCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCc
Q 035705          510 GANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYT  589 (758)
Q Consensus       510 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t  589 (758)
                      |+..+..+..+.+|+++|+..+..+.+..++...+.........+..       .........+.....+....+..|.|
T Consensus       129 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~g~t  201 (291)
T d1s70b_         129 GAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEER-------IMLRDARQWLNSGHINDVRHAKSGGT  201 (291)
T ss_dssp             TCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHH-------HHHHHHHHHHHHTCCCCCCCTTTCCC
T ss_pred             CcccccccccCccccccccccccchhccccccccccccccccccccc-------cccccchhhhcccccccccccCCCCC
Confidence            99999999999999999999999999999887766543322111111       11234445555666777788899999


Q ss_pred             HHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCccccccccCCCcchHH
Q 035705          590 PLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHTKCGKGSPHVK  669 (758)
Q Consensus       590 pL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~~~~~d~~g~t~l~~a  669 (758)
                      |||+|+..|+.++++.|+++|+|+|.+|..|+||||+|++.|+.+         ++++|+++|+|++.+|..|+||||+|
T Consensus       202 ~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~---------iv~lLl~~Gadv~~~d~~G~TaL~~A  272 (291)
T d1s70b_         202 ALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEE---------ACRILVENLCDMEAVNKVGQTAFDVA  272 (291)
T ss_dssp             HHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHH---------HHHHHHHTTCCTTCCCTTSCCTTTSC
T ss_pred             hhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHH---------HHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            999999999999999999999999999999999999999999996         66788999999999999999999998


Q ss_pred             H
Q 035705          670 L  670 (758)
Q Consensus       670 ~  670 (758)
                      +
T Consensus       273 ~  273 (291)
T d1s70b_         273 D  273 (291)
T ss_dssp             C
T ss_pred             H
Confidence            4

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6e-30  Score=248.80  Aligned_cols=221  Identities=22%  Similarity=0.224  Sum_probs=190.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHH
Q 035705          382 AGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVT  461 (758)
Q Consensus       382 ~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~  461 (758)
                      +|+||||+|+..|+.++++.|++.                                 +.+.|++++..+..|+||||+|+
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~---------------------------------~~~~g~~in~~d~~g~TpL~~A~   48 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNL---------------------------------FQQGGRELDIYNNLRQTPLHLAV   48 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHH---------------------------------HHHTTCCSCCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHH---------------------------------HHHCCCCCCccCCCCCccceehh
Confidence            588899999998988888887652                                 23344555555666678888889


Q ss_pred             HcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCC----CCCcCCCCCCcHHHHHHHcCChhHHH
Q 035705          462 QANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGA----NIKLQNKYGETAITLAELNRNGEVLE  537 (758)
Q Consensus       462 ~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~----~~~~~~~~g~t~L~~A~~~~~~~~v~  537 (758)
                      ..|+.+++++|+++ +++++..+..+.++++.|...++.++++.+.....    ..+.......++|+.+..........
T Consensus        49 ~~~~~~iv~~Ll~~-ga~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  127 (228)
T d1k1aa_          49 ITTLPSVVRLLVTA-GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQ  127 (228)
T ss_dssp             HTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             cccccccccccccc-cccccccccccccccccccccccccchhhhhhccccccccccccccccccccccccccccchhhh
Confidence            99999999999998 89999999999999999999999999988876532    23455667889999999999999888


Q ss_pred             HHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCC
Q 035705          538 QVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIEN  617 (758)
Q Consensus       538 ~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d  617 (758)
                      .+..............+.+||+.|+..+...+++.++++|.+++.+|..|.||||+|+..|+.+++++|+++|+|++.+|
T Consensus       128 ~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d  207 (228)
T d1k1aa_         128 LLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKN  207 (228)
T ss_dssp             HHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred             hhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCC
Confidence            88777776667777899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHCCChhhH
Q 035705          618 ARNETALALARENGNGNEA  636 (758)
Q Consensus       618 ~~g~t~L~~A~~~~~~~~~  636 (758)
                      .+|+||||+|+++|+.+++
T Consensus       208 ~~G~TpL~~A~~~~~~div  226 (228)
T d1k1aa_         208 CHNDTPLMVARSRRVIDIL  226 (228)
T ss_dssp             TTSCCTTTTCSSHHHHHHH
T ss_pred             CCCCCHHHHHHhCCCcccc
Confidence            9999999999999887754

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2e-30  Score=251.29  Aligned_cols=185  Identities=21%  Similarity=0.163  Sum_probs=160.3

Q ss_pred             CCCcHHHHHHHcCCHH----HHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHH
Q 035705          452 SRFSPLMFVTQANDVD----ALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLA  527 (758)
Q Consensus       452 ~~~t~L~~a~~~~~~~----~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  527 (758)
                      +|.||||+|+..|+.+    +++.+... ++++|.+|.+|+||||+|+..|+.+++++|+++|++++.+|..|.|||+++
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~-~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~   79 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGD-LAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLA   79 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC------CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhC-CCCcccCCCCCCccccccccccccccccccccccccccccccccccccccc
Confidence            4789999999999864    44555555 789999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChhHHHHHHHhhc-----cccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCC-CCCCcHHHHHHHcCcHH
Q 035705          528 ELNRNGEVLEQVILEYA-----LEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASD-ADGYTPLMLAAKSGHGS  601 (758)
Q Consensus       528 ~~~~~~~~v~~ll~~~~-----~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d-~~g~tpL~~A~~~~~~~  601 (758)
                      +..++.++++.++....     .........|.||||.|+..++.+++++|++.|+.++..+ .+|+||||+|+..|+.+
T Consensus        80 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~  159 (221)
T d1iknd_          80 CEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD  159 (221)
T ss_dssp             HHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred             cccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHH
Confidence            99999999998876432     2333345678999999999999999999999999998776 57999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHH
Q 035705          602 VCQLLISSGAKCDIENARNETALALARENGNGNEAE  637 (758)
Q Consensus       602 iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~  637 (758)
                      ++++|+++|+|++.+|.+|+||||+|++.++.++++
T Consensus       160 ~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~  195 (221)
T d1iknd_         160 LVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQ  195 (221)
T ss_dssp             HHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHH
T ss_pred             HHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHH
Confidence            999999999999999999999999999999987544

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.5e-29  Score=242.50  Aligned_cols=119  Identities=28%  Similarity=0.331  Sum_probs=79.2

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhCCCCCC-cCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHH
Q 035705          485 ADGFSAAMIAAAAGHVEAFRLLLHAGANIK-LQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK  563 (758)
Q Consensus       485 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~  563 (758)
                      ....++|+.+.........+.|.....+.. .....+.++|+.|+..+...+++.++. .+...+..|..|.||||+|+.
T Consensus       108 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~-~~~~~~~~d~~g~t~L~~A~~  186 (228)
T d1k1aa_         108 YDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQ-HGANVNAQMYSGSSALHSASG  186 (228)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHH
T ss_pred             cccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhh-hccccccccccCcchHHHHHH
Confidence            334445555555555555555554443322 223345555555555555555554432 334445556677788888888


Q ss_pred             cCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHH
Q 035705          564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQ  604 (758)
Q Consensus       564 ~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~  604 (758)
                      .|+.+++++|+++|+|+|.+|.+|+||||+|+++|+.++||
T Consensus       187 ~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         187 RGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            89999999999999999999999999999999999998885

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=3.3e-29  Score=240.59  Aligned_cols=204  Identities=25%  Similarity=0.343  Sum_probs=109.5

Q ss_pred             HHHHHHHHcCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHc
Q 035705          364 KILRRLISAGCNINS-RTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRS  442 (758)
Q Consensus       364 ~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~  442 (758)
                      |+|++|+++|+++|. .|.+|+||||+|+..|+.+++++|++.|++++..+..+.+                        
T Consensus         3 ~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~------------------------   58 (209)
T d1ot8a_           3 QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRT------------------------   58 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC------------------------
T ss_pred             HHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccccccccccc------------------------
Confidence            556666666666654 3555666666666666666666666655555544444332                        


Q ss_pred             CCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCc
Q 035705          443 GNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGET  522 (758)
Q Consensus       443 g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t  522 (758)
                                   +++.++..++.....................+.++.+.+.........+.|.+.+++++.++..|+|
T Consensus        59 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t  125 (209)
T d1ot8a_          59 -------------PLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKT  125 (209)
T ss_dssp             -------------HHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCB
T ss_pred             -------------cccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCCCCCC
Confidence                         3333333333333333333322223333445556666666666666666666666665555544444


Q ss_pred             HHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHH
Q 035705          523 AITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSV  602 (758)
Q Consensus       523 ~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~i  602 (758)
                                                        ||+.++..+..++++.+++.+.+++..|..|.||||+|+..|+.++
T Consensus       126 ----------------------------------~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~  171 (209)
T d1ot8a_         126 ----------------------------------ALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEA  171 (209)
T ss_dssp             ----------------------------------HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             ----------------------------------cchhhcccCcceeeeeeccccccccccccccccccchhccccHHHH
Confidence                                              4444444455555555555555555555555555555555555555


Q ss_pred             HHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHH
Q 035705          603 CQLLISSGAKCDIENARNETALALARENGNGNEAEN  638 (758)
Q Consensus       603 v~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~  638 (758)
                      +++|+++|+|++.+|..|+||||+|+++|+.++|++
T Consensus       172 v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~l  207 (209)
T d1ot8a_         172 SKALLDNFANREITDHMDRLPRDVASERLHHDIVRL  207 (209)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhh
Confidence            555555555555555555555555555555555543

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=2.5e-28  Score=234.43  Aligned_cols=176  Identities=24%  Similarity=0.295  Sum_probs=163.6

Q ss_pred             HHHHHHHHHhcCCCCcc-cCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhc
Q 035705          466 VDALKKLIEWADVDLDE-QDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYA  544 (758)
Q Consensus       466 ~~~v~~Ll~~~~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~  544 (758)
                      .|+|++|+++ |+|+|. .|.+|.||||+||..|+.+++++|++.|++++.++..+.++++.++..++............
T Consensus         2 ~~~v~~Ll~~-g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (209)
T d1ot8a_           2 AQVISDLLAQ-GAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRA   80 (209)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTT
T ss_pred             HHHHHHHHHC-CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccccccccccccccccc
Confidence            4789999998 789987 58999999999999999999999999999999999999999999999999888877776666


Q ss_pred             cccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHH
Q 035705          545 LEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETAL  624 (758)
Q Consensus       545 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L  624 (758)
                      .........|.++.+.+.......+.+.|.+.+++++.++..|+|||++|+..+..++++.|++.+++++.+|..|.|||
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL  160 (209)
T d1ot8a_          81 TNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPL  160 (209)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred             cccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeecccccccccccccccccc
Confidence            66666778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCChhhHHHHHHH
Q 035705          625 ALARENGNGNEAENVILD  642 (758)
Q Consensus       625 ~~A~~~~~~~~~~~ll~~  642 (758)
                      |+|+..|+.++++.|+..
T Consensus       161 ~~A~~~g~~~~v~~Ll~~  178 (209)
T d1ot8a_         161 FLAAREGSYEASKALLDN  178 (209)
T ss_dssp             HHHHHTTCHHHHHHHHHT
T ss_pred             chhccccHHHHHHHHHHC
Confidence            999999999999999853

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.1e-29  Score=241.98  Aligned_cols=174  Identities=21%  Similarity=0.200  Sum_probs=149.4

Q ss_pred             HHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC---
Q 035705          438 DSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIK---  514 (758)
Q Consensus       438 ~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~---  514 (758)
                      .+...+++++..+.+|+||||+|+..|+.+++++|++. |++++.+|..|.|||+.++..++.++++.|++.+.+..   
T Consensus        24 ~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~-g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~  102 (221)
T d1iknd_          24 QVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA-GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHS  102 (221)
T ss_dssp             -----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSC-CCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSC
T ss_pred             HHHhCCCCcccCCCCCCccccccccccccccccccccc-cccccccccccccccccccccccccccchhhhhcccccccc
Confidence            34444555666666777889999999999999999998 89999999999999999999999999999998876643   


Q ss_pred             ---cCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHH
Q 035705          515 ---LQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPL  591 (758)
Q Consensus       515 ---~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL  591 (758)
                         .....|.||||.|+..++.+++++++..........+.+|.||||+|++.|+.+++++|+++|+|++.+|..|+|||
T Consensus       103 ~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl  182 (221)
T d1iknd_         103 ILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPY  182 (221)
T ss_dssp             GGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGG
T ss_pred             cccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHH
Confidence               33456899999999999999999887666555555667899999999999999999999999999999999999999


Q ss_pred             HHHHHcCcHHHHHHHHhCCCC
Q 035705          592 MLAAKSGHGSVCQLLISSGAK  612 (758)
Q Consensus       592 ~~A~~~~~~~iv~~Ll~~gad  612 (758)
                      |+|+..++.+++++|++.+.+
T Consensus       183 ~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         183 QLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             GGCTTSSCHHHHHHHHTTSCG
T ss_pred             HHHHHCCCHHHHHHHHHcCCc
Confidence            999999999999999998766

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.94  E-value=1.5e-29  Score=261.61  Aligned_cols=157  Identities=15%  Similarity=0.106  Sum_probs=117.0

Q ss_pred             HcCCHHHHHHHHHccCCCCCC-------cccCCCCCCcHHHHHHHcCCHHHHHH---HHHcCCCCCCCCCCCCcHHHHHH
Q 035705          322 LCNNARAVELLLNCAVDKEFP-------VQTYSKTELRPIHLAARLGSAKILRR---LISAGCNINSRTAAGETAAMICA  391 (758)
Q Consensus       322 ~~g~~~~v~~Ll~~g~~~~~~-------~~~~~~~g~t~L~~A~~~g~~~~v~~---Ll~~g~~~~~~~~~g~t~L~~A~  391 (758)
                      ..+..++.+.+...+++.+..       +..++..|.|||++||.+|+.+++++   |++.|++++.+|..|.||||+|+
T Consensus        55 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa  134 (346)
T d2ajaa1          55 TKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAA  134 (346)
T ss_dssp             SSHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHcchhhccchhhhhhHHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHH
Confidence            334455666665555443321       22356788999999999999877665   78899999999999999999999


Q ss_pred             HcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHH
Q 035705          392 RYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKK  471 (758)
Q Consensus       392 ~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~  471 (758)
                      ++|+.++|++|+++|++++..+..                                   .+|.||||+|+..|+.+++++
T Consensus       135 ~~G~~~~v~~Ll~~g~~~~~~~~~-----------------------------------~~g~t~L~~Aa~~g~~~iv~~  179 (346)
T d2ajaa1         135 ENGHLHVLNRLCELAPTEIMAMIQ-----------------------------------AENYHAFRLAAENGHLHVLNR  179 (346)
T ss_dssp             HTTCHHHHHHHHHSCTTTHHHHHS-----------------------------------HHHHHHHHHHHHTTCHHHHHH
T ss_pred             HCCCHHHHHHHHHcCCCccccccc-----------------------------------cCCCChhHHHHHHhhHHHHHH
Confidence            999999999999999987654321                                   124578888899999999999


Q ss_pred             HHHhcCCCC---cccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC
Q 035705          472 LIEWADVDL---DEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIK  514 (758)
Q Consensus       472 Ll~~~~~~~---~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~  514 (758)
                      |++. |.+.   +..+.++.||++.|+.+|+.++|++|++.|++++
T Consensus       180 Ll~~-~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~  224 (346)
T d2ajaa1         180 LCEL-APTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA  224 (346)
T ss_dssp             HHHS-CGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHH
T ss_pred             HHHc-CCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcc
Confidence            9987 4443   3344566788888889999999999999888765

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.94  E-value=8e-29  Score=256.06  Aligned_cols=242  Identities=15%  Similarity=0.038  Sum_probs=164.5

Q ss_pred             hhcccCCchHHHHHHHcCcHHHHHH---HHhCCCCCCcccccCcch-hHHhhhChHHHHHHHHhcCCCccccchHHHHHH
Q 035705           83 YEEFKTEVTALFLAAHAGNLTLVRK---LLSLGANVNQKLFRGYAT-TAAVREDHLEILDLLIKAGACQEACEEALLETS  158 (758)
Q Consensus        83 ~~~~~~g~t~L~~A~~~g~~~iv~~---Ll~~ga~~~~~~~~g~~l-~~A~~~g~~~iv~~Ll~~ga~~~~~~~~l~~A~  158 (758)
                      ..++.+|.|||++||++||.+++++   |++.|+++|..+..|+|+ |+|+++||.++|++|+++|++++...       
T Consensus        84 ~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~-------  156 (346)
T d2ajaa1          84 HKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAM-------  156 (346)
T ss_dssp             HHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHH-------
T ss_pred             HhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccc-------
Confidence            4567899999999999999887765   789999999999999875 99999999999999999999876411       


Q ss_pred             HcCChhHHHHHHhccCCCCCCCchHHHHHHhcCCHHHHHHHHhCCCCCCcchhhhhhccccccccCCCCchhHHHHhcCC
Q 035705          159 YLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQ  238 (758)
Q Consensus       159 ~~g~~~iv~~Ll~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~d~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~  238 (758)
                                       ....|.||||+|+..||.++|++|++.|++....+..          ...+.||++.|+.+|+
T Consensus       157 -----------------~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~----------~~~~~t~l~~A~~~g~  209 (346)
T d2ajaa1         157 -----------------IQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQ----------AENYYAFRWAAVGRGH  209 (346)
T ss_dssp             -----------------HSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHH----------HHHHHHHHHHHSTTCC
T ss_pred             -----------------cccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccc----------cCCCcchhhHHhhcCH
Confidence                             1123678899999999999999999888765432211          0125677888888899


Q ss_pred             HHHHHHHHHcCCCCccccccCccccccccchhhhhhccccccccccchhhhhhhchHHHHHHHhhccCCCCCCCCchHHH
Q 035705          239 ISVVRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIH  318 (758)
Q Consensus       239 ~~iv~~Ll~~ga~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~g~t~L~  318 (758)
                      .++|++|+++|++++..+..+...                                               ...+.++++
T Consensus       210 ~~iv~~Ll~~ga~~~~~~~~~~~~-----------------------------------------------~~~~~~~~~  242 (346)
T d2ajaa1         210 HNVINFLLDCPVMLAYAEIHEFEY-----------------------------------------------GEKYVNPFI  242 (346)
T ss_dssp             HHHHHHHTTSHHHHHHHHHCTTTT-----------------------------------------------TTTTHHHHH
T ss_pred             HHHHHHHHhCCCCcchHHHHHHHc-----------------------------------------------CcHhhhHHH
Confidence            999999998888766443222110                                               112234444


Q ss_pred             HHHHcCCHHHHHHHHHccCCCCCCccc-----CCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-----CCCCCCCCCcHHH
Q 035705          319 HAILCNNARAVELLLNCAVDKEFPVQT-----YSKTELRPIHLAARLGSAKILRRLISAGCN-----INSRTAAGETAAM  388 (758)
Q Consensus       319 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~-----~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~  388 (758)
                      .+...+..+....+.....+....+..     ....+.++++.|+..|..+++++|++.+..     .+..+.+|+||||
T Consensus       243 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~Lh  322 (346)
T d2ajaa1         243 ARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLR  322 (346)
T ss_dssp             HHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHH
T ss_pred             HHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHH
Confidence            444444444433333322221111100     011234678888888888889988887653     3344567889999


Q ss_pred             HHHHcCCHHHHHHHHHC
Q 035705          389 ICARYKHEECLKFLASE  405 (758)
Q Consensus       389 ~A~~~g~~~iv~~Ll~~  405 (758)
                      +|++.|+.++|++|++.
T Consensus       323 lA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         323 LALRLGNQGACALLLSI  339 (346)
T ss_dssp             HHHHHTCTTHHHHHTTS
T ss_pred             HHHHcCcHHHHHHHhCC
Confidence            99999999999998864

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=9.9e-26  Score=204.86  Aligned_cols=153  Identities=27%  Similarity=0.352  Sum_probs=120.9

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChh
Q 035705          455 SPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGE  534 (758)
Q Consensus       455 t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  534 (758)
                      +|||.|+..|+.+++++|+++ |++++.+|..|.||||+|+ .|+.+++++|+++|++++..+..|.++++.++..+..+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~-g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~   80 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQN-NVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLD   80 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTS-CCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHC-CCCcCccCCcccccccccc-cccccccccccccccccccccccCcccccccccccccc
Confidence            688888888888888888887 7888888888888888775 67888888888888888888888888888888888877


Q ss_pred             HHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCC-CCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCC
Q 035705          535 VLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCY-DVNASDADGYTPLMLAAKSGHGSVCQLLISSG  610 (758)
Q Consensus       535 ~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~g  610 (758)
                      .++.++ ..+...+..+..|.+|||+|+..++.+++++|+++|+ +++.+|..|+||||+|++.++.+++++|+++|
T Consensus        81 ~~~~l~-~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          81 TLQTLL-EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             cccccc-cccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            777654 4455667777777788888888888888877777774 67777777788888888877888888877776

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.5e-25  Score=202.99  Aligned_cols=148  Identities=28%  Similarity=0.322  Sum_probs=128.5

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCH
Q 035705          488 FSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDF  567 (758)
Q Consensus       488 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~  567 (758)
                      .|||+.|++.|+.++|++|+++|++++ .|..|+||||+|+..++.++++.++..... ....+..+.++++.++...+.
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   80 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCcccccccccccccccccccccccc-ccccccccccccccccccccc
Confidence            378888888888888888888888776 577888888888888888888765544433 345566777899999999999


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHH
Q 035705          568 DLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAE  637 (758)
Q Consensus       568 ~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~  637 (758)
                      +++++++.+|++++.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+.+|+.++++
T Consensus        81 ~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~  150 (153)
T d1awcb_          81 NIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAE  150 (153)
T ss_dssp             HHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             eeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999998665

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2e-25  Score=202.81  Aligned_cols=154  Identities=19%  Similarity=0.236  Sum_probs=117.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 035705          315 TLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYK  394 (758)
Q Consensus       315 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g  394 (758)
                      +|||+|+..|+.++|++|+++|++++.    .|..|.||||+|+ .|+.+++++|+++|++++..+..+.+||+.++..+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~----~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~   77 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNA----QNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAG   77 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTC----CCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCc----cCCcccccccccc-cccccccccccccccccccccccCccccccccccc
Confidence            677777777777777777777777665    5677777777664 56777777777777777777777777777777777


Q ss_pred             CHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 035705          395 HEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIE  474 (758)
Q Consensus       395 ~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~  474 (758)
                      +.++++.|++.+.+++..+.                                     .|.+|++.|+..++.+++++|++
T Consensus        78 ~~~~~~~l~~~~~~~~~~~~-------------------------------------~~~~~l~~a~~~~~~~~~~~Ll~  120 (156)
T d1ihba_          78 FLDTLQTLLEFQADVNIEDN-------------------------------------EGNLPLHLAAKEGHLRVVEFLVK  120 (156)
T ss_dssp             CHHHHHHHHHTTCCTTCCCT-------------------------------------TSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cccccccccccccccccccc-------------------------------------ccccccccccccccccccccccc
Confidence            77777777777666554443                                     44467777788888888888888


Q ss_pred             hcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 035705          475 WADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAG  510 (758)
Q Consensus       475 ~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  510 (758)
                      +.+.+++.+|..|.||||+|+..++.+++++|+++|
T Consensus       121 ~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         121 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             cccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            866688888888888888888888888888888876

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3e-25  Score=201.31  Aligned_cols=150  Identities=27%  Similarity=0.347  Sum_probs=91.4

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChh
Q 035705          455 SPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGE  534 (758)
Q Consensus       455 t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  534 (758)
                      ..|+.|+..|+.++|+.|++..+++++.+|..|+||||+|+ .++.+++++|++++.+++..+..|.+|++         
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~---------   73 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVH---------   73 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHH---------
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-ccccccccccccccccccccccccccccc---------
Confidence            35677777777777777776656677777777777777665 36667777777777766666655555554         


Q ss_pred             HHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCC
Q 035705          535 VLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCD  614 (758)
Q Consensus       535 ~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~  614 (758)
                                               .++..++.+++++++++|+++|.+|..|+||||+|+..|+.+++++|+ .|++++
T Consensus        74 -------------------------~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~  127 (156)
T d1bd8a_          74 -------------------------DAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLH  127 (156)
T ss_dssp             -------------------------HHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTT
T ss_pred             -------------------------cccccccccccccccccccccccccCCCCeeecccccccccccccccc-cccccc
Confidence                                     455555555555555555555555555555555555555555555544 455555


Q ss_pred             CCCCCCCcHHHHHHHCCChhhHHHHH
Q 035705          615 IENARNETALALARENGNGNEAENVI  640 (758)
Q Consensus       615 ~~d~~g~t~L~~A~~~~~~~~~~~ll  640 (758)
                      .+|..|+||||+|++.|+.++++.|+
T Consensus       128 ~~d~~G~TpL~~A~~~g~~~iv~~Ll  153 (156)
T d1bd8a_         128 RRDARGLTPLELALQRGAQDLVDILQ  153 (156)
T ss_dssp             CCCTTSCCHHHHHHHSCCHHHHHHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            55555555555555555555555443

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.6e-25  Score=200.04  Aligned_cols=118  Identities=16%  Similarity=0.220  Sum_probs=106.4

Q ss_pred             cHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHH
Q 035705          522 TAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGS  601 (758)
Q Consensus       522 t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~  601 (758)
                      +.|+.|+..|+.++|+.|+.+.+.+++..|..|+||||+|+. |+.+++++|++++++++..+..|.+|++.++..++.+
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~   82 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD   82 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCcccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            357788888888888888877777788888888899998864 8899999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHH
Q 035705          602 VCQLLISSGAKCDIENARNETALALARENGNGNEAENVI  640 (758)
Q Consensus       602 iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll  640 (758)
                      ++++++++|++++.+|+.|+||||+|++.|+.+++++|+
T Consensus        83 ~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~  121 (156)
T d1bd8a_          83 TLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA  121 (156)
T ss_dssp             HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             ccccccccccccccccCCCCeeecccccccccccccccc
Confidence            999999999999999999999999999999999887665

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.8e-25  Score=226.61  Aligned_cols=182  Identities=15%  Similarity=0.151  Sum_probs=128.0

Q ss_pred             HcCCCcccC-CCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCC-------HHHHHHHHhCCCC
Q 035705          441 RSGNIIQSS-NASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGH-------VEAFRLLLHAGAN  512 (758)
Q Consensus       441 ~~g~~~~~~-~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~-------~~~v~~Ll~~g~~  512 (758)
                      ..+.++|.. |..|+||||+|+..|+.++|++|+++ |++++.+|..|+||||.|+..++       .+++++|.+   +
T Consensus        94 ~~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~-gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~---~  169 (301)
T d1sw6a_          94 NTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH-GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP---C  169 (301)
T ss_dssp             TSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG---G
T ss_pred             ccCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh---h
Confidence            356677755 88899999999999999999999988 89999999999999999998664       245555543   4


Q ss_pred             CCcCCCCCCcHHHHHHHcCCh----h--------HHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHH-----HHh
Q 035705          513 IKLQNKYGETAITLAELNRNG----E--------VLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHT-----LVS  575 (758)
Q Consensus       513 ~~~~~~~g~t~L~~A~~~~~~----~--------~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~-----Ll~  575 (758)
                      ++.+|..|+||||+++..+..    .        ++.+++.............+.++++.+........+..     ++.
T Consensus       170 ~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (301)
T d1sw6a_         170 LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIA  249 (301)
T ss_dssp             GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHH
T ss_pred             hhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHh
Confidence            566788899999988765442    2        22334444444444455566666666655443333322     222


Q ss_pred             cCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q 035705          576 RCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALAR  628 (758)
Q Consensus       576 ~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~  628 (758)
                        ..+|.+|..|+||||+|++.|+.++|++|+++|||++.+|+.|+|||++|+
T Consensus       250 --~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         250 --NMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             --HTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             --cCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence              247899999999999999999999999999999999999999999999985

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=4.7e-24  Score=192.89  Aligned_cols=150  Identities=21%  Similarity=0.271  Sum_probs=141.1

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCh
Q 035705          454 FSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNG  533 (758)
Q Consensus       454 ~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  533 (758)
                      .|||+.|++.|+.+++++||++ |++++ .+..|.||||+|+..++.++++.++.........+..+.++++.++...+.
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~-ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMAN-GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHH-TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHc-CCCcc-cccCCCccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3899999999999999999998 78887 689999999999999999999999999888888888999999999999999


Q ss_pred             hHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHH
Q 035705          534 EVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLL  606 (758)
Q Consensus       534 ~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~L  606 (758)
                      +++++++ ..+.+.+..+..|+||||+|+..|+.+++++|+++|+++|.+|..|.||||+|+.+|+.+++++|
T Consensus        81 ~~~~~l~-~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          81 NIVEVLL-KHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHH-TTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             eeeeccc-ccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            9998665 55678888999999999999999999999999999999999999999999999999999999976

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=2.7e-24  Score=183.72  Aligned_cols=106  Identities=25%  Similarity=0.249  Sum_probs=100.8

Q ss_pred             chHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChh
Q 035705          555 FYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGN  634 (758)
Q Consensus       555 ~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~  634 (758)
                      .|||++|++.|+.++|++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+.+|+.+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS   82 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchh
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             hHHHHHHHHHHHHHHhCCCccccccccCCCcchHH
Q 035705          635 EAENVILDELALTLVLDGTYVKKHTKCGKGSPHVK  669 (758)
Q Consensus       635 ~~~~ll~~~~~~~L~~~g~~~~~~d~~g~t~l~~a  669 (758)
                               ++++|+++|+|++.+|..|+||||+|
T Consensus        83 ---------~v~~Ll~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          83 ---------CVKLLLSKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             ---------HHHHHHTTCCCSSSSSSSTCCCCCTC
T ss_pred             ---------hhhhhhcccccceeeCCCCCCHHHHH
Confidence                     66788999999999999999999986

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=3.4e-24  Score=217.09  Aligned_cols=188  Identities=17%  Similarity=0.097  Sum_probs=111.7

Q ss_pred             HcCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhccc---ccchHHHHHHHHHcCCCc
Q 035705          371 SAGCNINSR-TAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRW---TLGFQQAVVDSIRSGNII  446 (758)
Q Consensus       371 ~~g~~~~~~-~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~---~~~~~~~~~~ll~~g~~~  446 (758)
                      ..+.++|.. |.+|+||||+|+..|+.++|++|+++|++++.+|..|+||||.|+....   .....++++++.      
T Consensus        94 ~~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~------  167 (301)
T d1sw6a_          94 NTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY------  167 (301)
T ss_dssp             TSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG------
T ss_pred             ccCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHh------
Confidence            346677754 7777888888888888888888888888777777777776666654321   011112222221      


Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCC------------HHHHHHHHhCCCCC-
Q 035705          447 QSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGH------------VEAFRLLLHAGANI-  513 (758)
Q Consensus       447 ~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~------------~~~v~~Ll~~g~~~-  513 (758)
                                                     .+++..|..|+||||+++..+.            ..++.+++..+... 
T Consensus       168 -------------------------------~~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  216 (301)
T d1sw6a_         168 -------------------------------PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPI  216 (301)
T ss_dssp             -------------------------------GGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCE
T ss_pred             -------------------------------hhhhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcch
Confidence                                           2233444445555554443221            12345555554333 


Q ss_pred             CcCCCCCCcHHHHHHHcCChhHHHHHHHh--hccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHH
Q 035705          514 KLQNKYGETAITLAELNRNGEVLEQVILE--YALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPL  591 (758)
Q Consensus       514 ~~~~~~g~t~L~~A~~~~~~~~v~~ll~~--~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL  591 (758)
                      ......+.++++.+........+..+...  ....++.+|..|+||||+|++.|+.++|++|+++|++++.+|..|+|||
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl  296 (301)
T d1sw6a_         217 QSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPV  296 (301)
T ss_dssp             EEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGG
T ss_pred             hcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHH
Confidence            33445556666666555544444332211  1233688899999999999999999999999999999999999999999


Q ss_pred             HHHH
Q 035705          592 MLAA  595 (758)
Q Consensus       592 ~~A~  595 (758)
                      ++|+
T Consensus       297 ~~A~  300 (301)
T d1sw6a_         297 DFGA  300 (301)
T ss_dssp             GGTC
T ss_pred             HHcC
Confidence            9985

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=6e-23  Score=177.39  Aligned_cols=120  Identities=23%  Similarity=0.218  Sum_probs=107.8

Q ss_pred             CchHHHHHHHcCcHHHHHHHHhCCCCCCcccccCcchhHHhhhChHHHHHHHHhcCCCccccchHHHHHHHcCChhHHHH
Q 035705           89 EVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTAAVREDHLEILDLLIKAGACQEACEEALLETSYLGQARPAEL  168 (758)
Q Consensus        89 g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~l~~A~~~g~~~iv~~  168 (758)
                      +.++||+||..|+.++|++|+++|+++|.++..|.|+..++..|+.+++++|+++|++++.                   
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~~g~~~~v~~Ll~~ga~~~~-------------------   63 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNC-------------------   63 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSCTTCHHHHHHHHTTTCCCCC-------------------
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCcccccccccccccccccccccccccccccccccccc-------------------
Confidence            4589999999999999999999999999999999987334567999999999999999874                   


Q ss_pred             HHhccCCCCCCC-chHHHHHHhcCCHHHHHHHHhCCCCCCcchhhhhhccccccccCCCCchhHHHHhcCCHHHHHHHHH
Q 035705          169 LMATDLIRPQVS-VHALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQ  247 (758)
Q Consensus       169 Ll~~~~~~~~~~-~t~L~~A~~~g~~~iv~~Ll~~g~d~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~  247 (758)
                             .+..+ .||||+|+..|+.+++++|+++|++++..+             ..|+||||+|++.|+.+++++|++
T Consensus        64 -------~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d-------------~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          64 -------ADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRD-------------AWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             -------CCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCC-------------TTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             -------cccccccccccccccccccccccccccccccccccc-------------CCCCCHHHHHHHcCCHHHHHHHHh
Confidence                   33344 479999999999999999999999999998             469999999999999999999975

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=7e-23  Score=176.97  Aligned_cols=120  Identities=23%  Similarity=0.220  Sum_probs=84.5

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhccccc
Q 035705          351 LRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTL  430 (758)
Q Consensus       351 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~  430 (758)
                      .++||.|+..|+.++|++|+++|++++.++..|.||||+|+ .|+.+++++|+++|++++..+..+.             
T Consensus         4 ~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~-------------   69 (125)
T d1bi7b_           4 ADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATL-------------   69 (125)
T ss_dssp             TTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTC-------------
T ss_pred             hhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccccccccccccccccccc-------------
Confidence            45777777777777777777777777777777777777554 5677777777777776665544432             


Q ss_pred             chHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHh
Q 035705          431 GFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLH  508 (758)
Q Consensus       431 ~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  508 (758)
                                             .||||+|++.|+.+++++|++. |++++.+|..|+||||+|+.+|+.+++++|++
T Consensus        70 -----------------------~~~L~~A~~~g~~~~v~~Ll~~-ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          70 -----------------------TRPVHDAAREGFLDTLVVLHRA-GARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             -----------------------CCHHHHHHHHTCHHHHHHHHHH-TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             -----------------------cccccccccccccccccccccc-ccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence                                   2467777777777777777776 67777777777777777777777777777764

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=1.5e-23  Score=178.99  Aligned_cols=106  Identities=28%  Similarity=0.385  Sum_probs=88.5

Q ss_pred             cHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHH
Q 035705          489 SAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFD  568 (758)
Q Consensus       489 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~  568 (758)
                      |||++|+++|+.++|++|+++|++++.++..                                  |+||||+|+..|+.+
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~----------------------------------g~t~lh~A~~~~~~~   49 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEG----------------------------------GRKPLHYAADCGQLE   49 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCCCCCSSS----------------------------------SCCTTHHHHHHSTTT
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhcccccccc----------------------------------ccccccccccccccc
Confidence            6777777777777777777777777666654                                  445566666677777


Q ss_pred             HHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q 035705          569 LVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALAR  628 (758)
Q Consensus       569 ~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~  628 (758)
                      ++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|+|++.+|.+|+||||+|.
T Consensus        50 ~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          50 ILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             HHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCHHHHHHHTTCCCSSSSSSSTCCCCCTCS
T ss_pred             cccccccccceeeecccccccchhhhhhcCchhhhhhhhcccccceeeCCCCCCHHHHHh
Confidence            888889999999999999999999999999999999999999999999999999999883

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.2e-21  Score=170.31  Aligned_cols=118  Identities=28%  Similarity=0.355  Sum_probs=90.3

Q ss_pred             cHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHH
Q 035705          489 SAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFD  568 (758)
Q Consensus       489 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~  568 (758)
                      ++|+.|+..|+.++|++|+++|+|++.+|..|                                  +||||+|+..|+.+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g----------------------------------~t~Lh~A~~~~~~~   48 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEG----------------------------------ITALHNAVCAGHTE   48 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTS----------------------------------CCHHHHHHHHTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCcccccccc----------------------------------cccccccccccccc
Confidence            46777777777777777777777776666544                                  45566667777788


Q ss_pred             HHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCC-CCCcHHHHH--HHCCChhhHHHHH
Q 035705          569 LVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENA-RNETALALA--RENGNGNEAENVI  640 (758)
Q Consensus       569 ~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~-~g~t~L~~A--~~~~~~~~~~~ll  640 (758)
                      ++++|+++|+++|.+|.+|+||||+|+..|+.+++++|+++|++++.++. .|+||++++  ++.|+.+++++|+
T Consensus        49 ~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~  123 (130)
T d1ycsb1          49 IVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY  123 (130)
T ss_dssp             HHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHH
T ss_pred             ccccccccccccccccccCcccccccchhhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHH
Confidence            88888888888888888888888888888888888888888888887764 578887765  4667787666554

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=8.1e-22  Score=171.40  Aligned_cols=105  Identities=22%  Similarity=0.277  Sum_probs=96.7

Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 035705          315 TLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYK  394 (758)
Q Consensus       315 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g  394 (758)
                      ++|+.|+..|+.++|++|+++|++++.    ++..|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+.+|
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~----~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g   78 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSL----PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCN   78 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCC----CCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccc----cccccccccccccccccccccccccccccccccccccCcccccccchhh
Confidence            689999999999999999999999886    7899999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCCCCccc-CCCCHHHHH
Q 035705          395 HEECLKFLASEGADLGLINY-AGQCANSIA  423 (758)
Q Consensus       395 ~~~iv~~Ll~~g~~~~~~~~-~g~t~l~~a  423 (758)
                      +.+++++|+++|++++..+. .++||++++
T Consensus        79 ~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~  108 (130)
T d1ycsb1          79 NVQVCKFLVESGAAVFAMTYSDMQTAADKC  108 (130)
T ss_dssp             CHHHHHHHHHTTCCTTCCCSSSCCCHHHHC
T ss_pred             HHHHHHHHHHcCCCcccccCCCCCCHHHHH
Confidence            99999999999999987764 466665444

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=1.9e-20  Score=166.86  Aligned_cols=121  Identities=18%  Similarity=0.201  Sum_probs=99.7

Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHc---CC
Q 035705          490 AAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKR---GD  566 (758)
Q Consensus       490 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~---g~  566 (758)
                      .|..|++.++...+..++..|+|++...                            .....+..|+||||+|++.   +.
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~----------------------------~~~~~~~~g~t~Lh~A~~~~~~~~   60 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKI----------------------------PLANGHEPDETALHLAVRSVDRTS   60 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBC----------------------------CCSSCSSTTCBHHHHHHHHCCTTT
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCC----------------------------CcccCCCCCCchHHHHHHhcCCCC
Confidence            3556777888888888888777765431                            1122345678888888864   67


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHH
Q 035705          567 FDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAEN  638 (758)
Q Consensus       567 ~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~  638 (758)
                      .+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|+||||+|++.|+.++++.
T Consensus        61 ~~iv~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~  132 (154)
T d1dcqa1          61 LHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEEL  132 (154)
T ss_dssp             HHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHcCCChhhhhhhhccccccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHH
Confidence            899999999999999999999999999999999999999999999999999999999999999999975553

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=7.9e-20  Score=162.76  Aligned_cols=129  Identities=22%  Similarity=0.299  Sum_probs=113.8

Q ss_pred             chhHHHHhcCCHHHHHHHHHcCCCCccccccCccccccccchhhhhhccccccccccchhhhhhhchHHHHHHHhhccCC
Q 035705          228 NALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISP  307 (758)
Q Consensus       228 t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~  307 (758)
                      ..|..|+++++...+..++..|++++.....                                                .
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~------------------------------------------------~   39 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPL------------------------------------------------A   39 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCC------------------------------------------------S
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCcCCCCCc------------------------------------------------c
Confidence            3567889999999999999999988754211                                                1


Q ss_pred             CCCCCCchHHHHHHHc---CCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Q 035705          308 NILHNGRTLIHHAILC---NNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGE  384 (758)
Q Consensus       308 ~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~  384 (758)
                      ..+..|+||||+|+..   ++.++|++|+++|++++.    ++..|+||||+|+..|+.+++++|+++|++++.+|..|.
T Consensus        40 ~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~----~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~  115 (154)
T d1dcqa1          40 NGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDK----QTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGE  115 (154)
T ss_dssp             SCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTC----CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             cCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhh----hhhhhccccccccccccccccccccccCccccccCCCCC
Confidence            1356789999999974   688999999999999876    789999999999999999999999999999999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCC
Q 035705          385 TAAMICARYKHEECLKFLASEGAD  408 (758)
Q Consensus       385 t~L~~A~~~g~~~iv~~Ll~~g~~  408 (758)
                      ||||+|++.|+.+++++|++.+..
T Consensus       116 tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1         116 TPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             CHHHHHHHcCCHHHHHHHHHhCCC
Confidence            999999999999999999997654