Citrus Sinensis ID: 035734

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-----
Protein Sequence
MPKPDCEHIRDMMKKKKMMILVVNFNPFCWLRQRLAFHGHDESKDSSNRGNFLELLRFLTDHNEDINVVTFDNAPGNLQMTSNEIKKEIVSCVAIETTNIIINEMGDVLFSLLINESHDISVKEQMVVVLRYVDKNGYVVERFIGIEHITSTTSISLKEALDRLFSKHGLSMSRLRGQGYDGASNMQGEFNGLKALILEDNKCPYFIHCFAHQLQLALISVAKKH
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEccEEccccccEEEEEEEEEcccccEEEEEEEEEEcccccHHHHHHHHHHHHHHcccccccEEEEEccccccccccHHHHHHHHHHHccccEEEccHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccccccccccEEEEEEEEcccccEEEEEEEEEEcccccHHHHHHHHHHHHHHccccHHHcccccccccccccccHHHHHHHHHHHcccEEEEHHHHHHHHEEHHHHHHcc
Coil and Loop (DISEMBL)
MPKPDCEHIRDMMKKKKMMILVVNFNPFCWLRQRlafhghdeskdssnrGNFLELLRFLtdhnedinvvtfdnapgnlqmtSNEIKKEIVSCVAIETTNIIINEMGDVLFSLLINESHDISVKEQMVVVLRYVDKNGYVVERFIGIEHITSTTSISLKEALDRLFSKhglsmsrlrgqgydgasnmqgeFNGLkalilednkcpyfiHCFAHQLQLALISVAKKH
Flexible Loop (DISEMBL)
MPKPDCEHIRDMMKKKKMMILVVNFNPFCWLRQRLAFHGhdeskdssnRGNFLELLRFLTDHNEDINVVTFDNAPGNLQMTSNEIKKEIVSCVAIETTNIIINEMGDVLFSLLINESHDISVKEQMVVVLRYVDKNGYVVERFIGiehitsttsiSLKEALDRLFSKHGLSMSRLRGQGYDGASNMQGEFNGLKALILEDNKCPYFIHCFAHQLQLALISVAKKH
Low Complexity Region (SEG)
MPKPDCEHIRDmmkkkkmmILVVNFNPFCWLRQRLAFHGHDESKDSSNRGNFLELLRFLTDHNEDINVVTFDNAPGNLQMTSNEIKKEIVSCVAIETTNIIINEMGDVLFSLLINESHDISVKEQMVVVLRYVDKNGYVVERFIGIEHITSTTSISLKEALDRLFSKHGLSMSRLRGQGYDGASNMQGEFNGLKALILEDNKCPYFIHCFAHQLQLALISVAKKH
Disordered region (IsUnstruct)
***************KKMMILVVNFNPFCWLRQRLAFHG**********GNFLELLRFLTDHNEDINVVTFDNAPGNLQMTSNEIKKEIVSCVAIETTNIIINEMGDVLFSLLINESHDISVKEQMVVVLRYVDKNGYVVERFIGIEHITSTTSISLKEALDRLFSKHGLS********Y*****MQGEFNGLKALILEDNKCPYFIHCFAHQLQLALISV****
Disordered Region (DISOPRED)
***********MMKKKKMMILVVNFNPFCWLRQRLAFHGHDESKDSSNRGNFLELLRFLTDHNEDINVVTFDNAPGNLQMTSNEIKKEIVSCVAIETTNIIINEMGDVLFSLLINESHDISVKEQMVVVLRYVDKNGYVVERFIGIEHITSTTSISLKEALDRLFSKHGLSMSRLRGQGYDGASNMQGEFNGLKALILEDNKCPYFIHCFAHQLQLALISVAKK*
Disordered Region (DISEMBL)
MPKPDCEHIRDMMKKKKMMILVVNFNPFCWLRQRLAFHG********NRGNFLELLRFLTDHNEDINVVTFDNAPGNLQMTSNEIKKEIVSCVAIETTNIIINEMGDVLFSLLINESHDISVKEQMVVVLRYVDKNGYVVERFIGIEHITSTTSISLKEALDRLFSKHGLSMSRLRGQGYDGASNMQGEFNGLKALILEDNKCPYFIHCFAHQLQLALISVAKKH
Disordered Region (DISPRO)
****DCEHIRDMMKKKKMMILVVNFNPFCWLRQRLAFHGHDESKDSSNRGNFLELLRFLTDHNEDINVVTFDNAPGNLQMTSNEIKKEIVSCVAIETTNIIINEMGDVLFSLLINESHDISVKEQMVVVLRYVDKNGYVVERFIGIEHITSTTSISLKEALDRLFSKHGLSMSRLRGQGYDGASNMQGEFNGLKALILEDNKCPYFIHCFAHQLQLALISVAKKH
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPKPDCEHIRDMMKKKKMMILVVNFNPFCWLRQRLAFHGHDESKDSSNRGNFLELLRFLTDHNEDINVVTFDNAPGNLQMTSNEIKKEIVSCVAIETTNIIINEMGDVLFSLLINESHDISVKEQMVVVLRYVDKNGYVVERFIGIEHITSTTSISLKEALDRLFSKHGLSMSRLRGQGYDGASNMQGEFNGLKALILEDNKCPYFIHCFAHQLQLALISVAKKH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	225	2.2.26 [Sep-21-2011]
Q5SVZ6	1142	Zinc finger MYM-type prot	yes	no	0.924	0.182	0.290	8e-20
O95789	1325	Zinc finger MYM-type prot	no	no	0.475	0.080	0.318	6e-06
O43422	761	52 kDa repressor of the i	no	no	0.813	0.240	0.230	4e-05
Q9CUX1	758	52 kDa repressor of the i	no	no	0.764	0.226	0.234	0.0006
Q4R6P1	573	Protein FAM200A OS=Macaca	N/A	no	0.662	0.260	0.225	0.0007
Q8TCP9	573	Protein FAM200A OS=Homo s	no	no	0.662	0.260	0.225	0.0008

>sp|Q5SVZ6|ZMYM1_HUMAN Zinc finger MYM-type protein 1 OS=Homo sapiens GN=ZMYM1 PE=2 SV=1

 Score = 97.1 bits (240), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 114/227 (50%), Gaps = 19/227 (8%)

Query: 8   HIRDMMKKKKMMILVVNFNPFCWLRQRLAFHGHDESKDSSNRGNFLELLRF-LTDHNEDI 66
           H + +   KK + L++  N     +Q L   G+D+S  S N+GNFLELL     D  E+ 
Sbjct: 543 HSKQIEGNKKYLKLIIE-NILFLGKQCLPLRGNDQSVSSVNKGNFLELLEMRAKDKGEET 601

Query: 67  -----NVVTFDNAPGNLQMTSNEIKKEIVSCVAIETTNIIINEMGDV-LFSLLINESHDI 120
                + V F N        S +I+ +I+  +  E    I+NE+ D   FS++ +E+ + 
Sbjct: 602 FRLMNSQVDFYN--------STQIQSDIIEIIKTEMLQDIVNEINDSSAFSIICDETINS 653

Query: 121 SVKEQMVVVLRYVDKNGYVV---ERFIGIEHITSTTSISLKEALDRLFSKHGLSMSRLRG 177
           ++KEQ+ + +RY  K+   +   ERF+G       T   L   +     + G+ M ++ G
Sbjct: 654 AMKEQLSICVRYPQKSSKAILIKERFLGFVDTEEMTGTHLHRTIKTYLQQIGVDMDKIHG 713

Query: 178 QGYDGASNMQGEFNGLKALILEDNKCPYFIHCFAHQLQLALISVAKK 224
           Q YD  +N++ +FN + A   ++     +IHC+AH L L++I   K+
Sbjct: 714 QAYDSTTNLKIKFNKIAAEFKKEEPRALYIHCYAHFLDLSIIRFCKE 760

Homo sapiens (taxid: 9606)

>sp|O95789|ZMYM6_HUMAN Zinc finger MYM-type protein 6 OS=Homo sapiens GN=ZMYM6 PE=2 SV=2

 Score = 51.2 bits (121), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 3/110 (2%)

Query: 110  FSLLINESHDISVKEQMVVVLRYVDKNGYVV--ERFIGIEHITSTTSISLKEALDRLFSK 167
            F+L I+ES +IS    ++  +R++D +   V  E    IE  T  T   + E +++    
Sbjct: 908  FALQIDESSEISNITLLLCYIRFIDYDCRDVKEELLFCIEMPTQITGFEIFELINKYIDS 967

Query: 168  HGLSMSRLRGQGYDGASNMQGEFNGLKALILE-DNKCPYFIHCFAHQLQL 216
              L+     G   DGA++M G ++GLKA I E       F HCF H+ +L
Sbjct: 968  KSLNWKHCVGLCTDGAASMTGRYSGLKAKIQEVAMNTAAFTHCFIHRERL 1017

Plays a role in the regulation of cell morphology and cytoskeletal organization.

Homo sapiens (taxid: 9606)

>sp|O43422|P52K_HUMAN 52 kDa repressor of the inhibitor of the protein kinase OS=Homo sapiens GN=PRKRIR PE=1 SV=2

 Score = 48.5 bits (114), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 86/195 (44%), Gaps = 12/195 (6%)

Query: 32  RQRLAFHGHDESKDSS---NRGNFLELLRFLTDHNEDINVVTFDNAPGNLQMTSNEIKKE 88
           +Q +   GH+  +         NF  LL    +  E++    F+    N    S   +++
Sbjct: 178 KQNIPLDGHEADEIPEGLFTPDNFQALLECRINSGEEVLRKRFETTAVNTLFCSKTQQRQ 237

Query: 89  IV----SCVAIETTNIIINEMGDV-LFSLLINESHDISVKEQMVVVLRYVDKNGYVVERF 143
           ++    SC+  ET    + E+ D   FS++ ++  DI+ +E + V++R+VD++  + E F
Sbjct: 238 MLEICESCIREET----LREVRDSHFFSIITDDVVDIAGEEHLPVLVRFVDESHNLREEF 293

Query: 144 IGIEHITSTTSISLKEALDRLFSKHGLSMSRLRGQGYDGASNMQGEFNGLKALILEDNKC 203
           IG     +   I   +    +  K GL+M   RGQ Y  +S    +   + + +LE    
Sbjct: 294 IGFLPYEADAEILAVKFHTMITEKWGLNMEYCRGQAYIVSSGFSSKMKVVASRLLEKYPQ 353

Query: 204 PYFIHCFAHQLQLAL 218
             +  C +  L + L
Sbjct: 354 AIYTLCSSCALNMWL 368

Upstream regulator of interferon-induced serine/threonine protein kinase R (PKR). May block the PKR-inhibitory function of P58IPK, resulting in restoration of kinase activity and suppression of cell growth.

Homo sapiens (taxid: 9606)

>sp|Q9CUX1|P52K_MOUSE 52 kDa repressor of the inhibitor of the protein kinase OS=Mus musculus GN=Prkrir PE=2 SV=2

 Score = 44.3 bits (103), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 80/188 (42%), Gaps = 16/188 (8%)

Query: 32  RQRLAFHGHDESKDSSNRG-----NFLELLRFLTDHNEDINVVTFDNAPGNLQMTSNEIK 86
           +Q +   GH+   D    G     NF  LL    +  E++    F+    N    S   +
Sbjct: 174 KQNIPLDGHE--ADEVPEGLFAPDNFQALLECRINSGEEVLRKRFEATAVNTLFCSKTQQ 231

Query: 87  KEIV----SCVAIETTNIIINEMGDV-LFSLLINESHDISVKEQMVVVLRYVDKNGYVVE 141
           + ++    SC+  ET    + E+ D   FS++ ++  DI+ +E + V++R+VD    + E
Sbjct: 232 RHMLEICESCIREET----LREVRDSHFFSIITDDVVDIAGEEHLPVLVRFVDDAHNLRE 287

Query: 142 RFIGIEHITSTTSISLKEALDRLFSKHGLSMSRLRGQGYDGASNMQGEFNGLKALILEDN 201
            F+G     +   I   +    +  K GL+M   RGQ Y  +S    +   + + +LE  
Sbjct: 288 EFVGFLPYEADAEILAVKFHTTITEKWGLNMEYCRGQAYIVSSGFSSKMKVVASRLLEKY 347

Query: 202 KCPYFIHC 209
               +  C
Sbjct: 348 PQAVYTLC 355

Upstream regulator of interferon-induced serine/threonine protein kinase R (PKR).

Mus musculus (taxid: 10090)

>sp|Q4R6P1|F200A_MACFA Protein FAM200A OS=Macaca fascicularis GN=FAM200A PE=2 SV=1

 Score = 44.3 bits (103), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 73/155 (47%), Gaps = 6/155 (3%)

Query: 65  DINVVTFDNAPGN----LQMTSNEIKKEIVSCVAIETTNIIINEMGDVLFSLLINESHDI 120
           D+    FD+   +    + ++ N I + I +        +I      + F++ ++ES DI
Sbjct: 91  DMVRTIFDDKSADKLRTIPLSDNTISRRICTIAKHLEAMLITRLQSGIDFAIQLDESTDI 150

Query: 121 SVKEQMVVVLRYVDKNGYVVERFIGIEHITSTTSISLKEALDR-LFSKHGLSMSRLRGQG 179
           +    ++V +RYV ++ +V +    +   +  T + L   L+  +  ++ L+    +G  
Sbjct: 151 ASCPTLLVYVRYVWQDDFVEDLLCCLNLNSHITGLDLFTELENCIVGQYKLNWKHCKGIS 210

Query: 180 YDGASNMQGEFNGLKALILE-DNKCPYFIHCFAHQ 213
            DGA+NM G+ + L   +LE  +    + HCF H+
Sbjct: 211 SDGAANMTGKHSRLTEKLLEATHNNALWNHCFIHR 245

Macaca fascicularis (taxid: 9541)

>sp|Q8TCP9|F200A_HUMAN Protein FAM200A OS=Homo sapiens GN=FAM200A PE=2 SV=1

 Score = 43.9 bits (102), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 72/155 (46%), Gaps = 6/155 (3%)

Query: 65  DINVVTFDNAPGN----LQMTSNEIKKEIVSCVAIETTNIIINEMGDVLFSLLINESHDI 120
           D+    FD+   +    + ++ N I + I +        +I      + F++ ++ES DI
Sbjct: 91  DMVRTIFDDKSADKLRTIPLSDNTISRRICTIAKHLEAMLITRLQSGIDFAIQLDESTDI 150

Query: 121 SVKEQMVVVLRYVDKNGYVVERFIGIEHITSTTSISLKEALDR-LFSKHGLSMSRLRGQG 179
           +    ++V +RYV ++ +V +    +   +  T + L   L+  L  ++ L+    +G  
Sbjct: 151 ASCPTLLVYVRYVWQDDFVEDLLCCLNLNSHITGLDLFTELENCLLGQYKLNWKHCKGIS 210

Query: 180 YDGASNMQGEFNGLKALILE-DNKCPYFIHCFAHQ 213
            DG +NM G+ + L   +LE  +    + HCF H+
Sbjct: 211 SDGTANMTGKHSRLTEKLLEATHNNAVWNHCFIHR 245

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
224126313	788	predicted protein [Populus trichocarpa]	0.866	0.247	0.630	4e-67
357490617	892	Zinc finger MYM-type protein [Medicago t	0.866	0.218	0.594	2e-63
15230069	505	General transcription factor 2-related z	0.866	0.386	0.579	2e-61
15221982	769	TTF-type zinc finger protein with HAT di	0.866	0.253	0.579	5e-61
8954063	811	Contains similarity to a transposable el	0.866	0.240	0.579	6e-61
77550806	876	hAT family dimerisation domain containin	0.857	0.220	0.544	9e-59
242080863	776	hypothetical protein SORBIDRAFT_07g00579	0.866	0.251	0.553	1e-58
242080751	635	hypothetical protein SORBIDRAFT_07g00480	0.866	0.307	0.533	3e-57
19225003	811	putative transposase [Oryza sativa Japon	0.857	0.237	0.549	3e-57
116317825	793	OSIGBa0126J24.6 [Oryza sativa Indica Gro	0.866	0.245	0.517	4e-57

>gi|224126313|ref|XP_002319808.1| predicted protein [Populus trichocarpa] gi|222858184|gb|EEE95731.1| predicted protein [Populus trichocarpa]

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 123/195 (63%), Positives = 156/195 (80%)

Query: 31  LRQRLAFHGHDESKDSSNRGNFLELLRFLTDHNEDINVVTFDNAPGNLQMTSNEIKKEIV 90
           L Q L F GHDE + SSN+GN+LELL FL+ +NE I  VTF  AP + ++TS +I+K+I 
Sbjct: 203 LHQGLPFRGHDECECSSNQGNYLELLHFLSRNNEAIKRVTFSEAPRHNKLTSPDIQKDIT 262

Query: 91  SCVAIETTNIIINEMGDVLFSLLINESHDISVKEQMVVVLRYVDKNGYVVERFIGIEHIT 150
              A E TN+II ++GD LFS+LI+ES DIS+KEQM VVLRYVD NG+++ERF+GI+H+ 
Sbjct: 263 QAAAEEITNVIIKDLGDSLFSILIDESRDISIKEQMAVVLRYVDNNGHIIERFLGIQHVR 322

Query: 151 STTSISLKEALDRLFSKHGLSMSRLRGQGYDGASNMQGEFNGLKALILEDNKCPYFIHCF 210
            TT+ SLK A++ LFSKHGLS+SRLRGQGYDGASNM+GEFNGLKALIL  N   Y++HCF
Sbjct: 323 DTTASSLKAAIEALFSKHGLSISRLRGQGYDGASNMRGEFNGLKALILNSNPSAYYVHCF 382

Query: 211 AHQLQLALISVAKKH 225
           AH+LQL L++V KKH
Sbjct: 383 AHRLQLTLVAVTKKH 397

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357490617|ref|XP_003615596.1| Zinc finger MYM-type protein [Medicago truncatula] gi|355516931|gb|AES98554.1| Zinc finger MYM-type protein [Medicago truncatula]

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 116/195 (59%), Positives = 155/195 (79%)

Query: 31  LRQRLAFHGHDESKDSSNRGNFLELLRFLTDHNEDINVVTFDNAPGNLQMTSNEIKKEIV 90
           L+Q L+F GHDE  +SSN+GNFLELLR+     + +  V  +NAP N +MT   I+KE V
Sbjct: 306 LKQGLSFRGHDEKIESSNQGNFLELLRWFAKRKKKVKRVVLENAPENDKMTCPSIQKEFV 365

Query: 91  SCVAIETTNIIINEMGDVLFSLLINESHDISVKEQMVVVLRYVDKNGYVVERFIGIEHIT 150
           S +++ETT  II ++GD LF++L++ES D+S KEQMVVVLRYV+K G +VERF+GI H+T
Sbjct: 366 SAISLETTKAIIEDLGDELFAILVDESRDVSDKEQMVVVLRYVNKYGCIVERFLGIVHVT 425

Query: 151 STTSISLKEALDRLFSKHGLSMSRLRGQGYDGASNMQGEFNGLKALILEDNKCPYFIHCF 210
           +TT++SLK A+D LF KH L+ SR+RGQGYDGASNMQG+F+GLK LIL +N C +++HCF
Sbjct: 426 TTTAMSLKIAIDELFCKHSLTTSRIRGQGYDGASNMQGQFSGLKTLILRENPCAFYVHCF 485

Query: 211 AHQLQLALISVAKKH 225
           AHQLQLALI++A+ H
Sbjct: 486 AHQLQLALIAIARDH 500

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230069|ref|NP_189620.1| General transcription factor 2-related zinc finger protein [Arabidopsis thaliana] gi|332644085|gb|AEE77606.1| General transcription factor 2-related zinc finger protein [Arabidopsis thaliana]

 Score =  240 bits (613), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 113/195 (57%), Positives = 150/195 (76%)

Query: 31  LRQRLAFHGHDESKDSSNRGNFLELLRFLTDHNEDINVVTFDNAPGNLQMTSNEIKKEIV 90
           L Q L F GHDES++S+N+GNFLELL+++   NE +  V   NAP N QMTS  I+K+IV
Sbjct: 53  LHQGLPFRGHDESEESTNKGNFLELLKYIAGQNEVVKKVVLKNAPKNNQMTSPPIQKDIV 112

Query: 91  SCVAIETTNIIINEMGDVLFSLLINESHDISVKEQMVVVLRYVDKNGYVVERFIGIEHIT 150
            C + E T  II EM + +F LL++ES D S KEQM VV R+VDK G V ERFIG+ H+ 
Sbjct: 113 HCFSEEVTRSIIEEMDNDVFGLLVDESADASDKEQMAVVFRFVDKYGVVKERFIGVIHVQ 172

Query: 151 STTSISLKEALDRLFSKHGLSMSRLRGQGYDGASNMQGEFNGLKALILEDNKCPYFIHCF 210
            T+S+SLK A+D LF+K+GLS+ +LRG+GYDGASNM+G+FNGL++LIL++N   Y++HCF
Sbjct: 173 ETSSLSLKSAIDSLFAKYGLSLKKLRGKGYDGASNMKGKFNGLRSLILKENSSAYYVHCF 232

Query: 211 AHQLQLALISVAKKH 225
           AHQLQL +++VAKKH
Sbjct: 233 AHQLQLVVMAVAKKH 247

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221982|ref|NP_173360.1| TTF-type zinc finger protein with HAT dimerization domain [Arabidopsis thaliana] gi|332191703|gb|AEE29824.1| TTF-type zinc finger protein with HAT dimerization domain [Arabidopsis thaliana]

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 113/195 (57%), Positives = 149/195 (76%)

Query: 31  LRQRLAFHGHDESKDSSNRGNFLELLRFLTDHNEDINVVTFDNAPGNLQMTSNEIKKEIV 90
           L Q L F GHDES++S+N+GNF+ELL++    NE +  V   NAP N QMTS  I+K+IV
Sbjct: 185 LHQGLPFRGHDESEESTNKGNFVELLKYTAGQNEVVKKVVLKNAPKNNQMTSPPIQKDIV 244

Query: 91  SCVAIETTNIIINEMGDVLFSLLINESHDISVKEQMVVVLRYVDKNGYVVERFIGIEHIT 150
            C + E T  II EM + +F LL++ES D S KEQM VV R+VDK G V ERFIG+ H+ 
Sbjct: 245 HCFSKEVTRSIIEEMDNDVFGLLVDESADASDKEQMAVVFRFVDKYGVVKERFIGVIHVQ 304

Query: 151 STTSISLKEALDRLFSKHGLSMSRLRGQGYDGASNMQGEFNGLKALILEDNKCPYFIHCF 210
            T+S+SLK A+D LF+K+GLS+ +LRGQGYDGASNM+GEFNGL++LIL+++   Y++HCF
Sbjct: 305 ETSSLSLKSAIDSLFAKYGLSLKKLRGQGYDGASNMKGEFNGLRSLILKESSSAYYVHCF 364

Query: 211 AHQLQLALISVAKKH 225
           AHQLQL +++VAKKH
Sbjct: 365 AHQLQLVVMAVAKKH 379

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8954063|gb|AAF82236.1|AC069143_12 Contains similarity to a transposable element Tip100 protein for transposase from Ipomoea purpurea gb|4063769 and is a member of the transmembrane 4 family PF|00335 [Arabidopsis thaliana]

 Score =  239 bits (610), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 113/195 (57%), Positives = 149/195 (76%)

Query: 31  LRQRLAFHGHDESKDSSNRGNFLELLRFLTDHNEDINVVTFDNAPGNLQMTSNEIKKEIV 90
           L Q L F GHDES++S+N+GNF+ELL++    NE +  V   NAP N QMTS  I+K+IV
Sbjct: 227 LHQGLPFRGHDESEESTNKGNFVELLKYTAGQNEVVKKVVLKNAPKNNQMTSPPIQKDIV 286

Query: 91  SCVAIETTNIIINEMGDVLFSLLINESHDISVKEQMVVVLRYVDKNGYVVERFIGIEHIT 150
            C + E T  II EM + +F LL++ES D S KEQM VV R+VDK G V ERFIG+ H+ 
Sbjct: 287 HCFSKEVTRSIIEEMDNDVFGLLVDESADASDKEQMAVVFRFVDKYGVVKERFIGVIHVQ 346

Query: 151 STTSISLKEALDRLFSKHGLSMSRLRGQGYDGASNMQGEFNGLKALILEDNKCPYFIHCF 210
            T+S+SLK A+D LF+K+GLS+ +LRGQGYDGASNM+GEFNGL++LIL+++   Y++HCF
Sbjct: 347 ETSSLSLKSAIDSLFAKYGLSLKKLRGQGYDGASNMKGEFNGLRSLILKESSSAYYVHCF 406

Query: 211 AHQLQLALISVAKKH 225
           AHQLQL +++VAKKH
Sbjct: 407 AHQLQLVVMAVAKKH 421

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|77550806|gb|ABA93603.1| hAT family dimerisation domain containing protein [Oryza sativa Japonica Group]

 Score =  232 bits (591), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 105/193 (54%), Positives = 150/193 (77%)

Query: 31  LRQRLAFHGHDESKDSSNRGNFLELLRFLTDHNEDINVVTFDNAPGNLQMTSNEIKKEIV 90
           LRQ LAF GHDE+++S+NRGNFLELL++L  +NED+N V  +NAPGN  +TS  I+K+++
Sbjct: 288 LRQGLAFRGHDETEESNNRGNFLELLKWLAGNNEDVNKVVLNNAPGNCILTSPRIQKQVI 347

Query: 91  SCVAIETTNIIINEMGDVLFSLLINESHDISVKEQMVVVLRYVDKNGYVVERFIGIEHIT 150
            C ++ETT+ I+ E+GD  +++L +ES DIS KEQ+VV LRYVDK G V ERF+ + H+ 
Sbjct: 348 RCCSMETTSCILKELGDEHYAILADESSDISHKEQLVVCLRYVDKLGRVCERFLAVVHVA 407

Query: 151 STTSISLKEALDRLFSKHGLSMSRLRGQGYDGASNMQGEFNGLKALILEDNKCPYFIHCF 210
            T+S+ LK A+  L + H L+++++RGQGYDGASNM+ E  GLK LI++++   Y++HCF
Sbjct: 408 GTSSLQLKTAIQSLLTSHHLTLTQIRGQGYDGASNMKREVKGLKTLIMKESPLAYYVHCF 467

Query: 211 AHQLQLALISVAK 223
           AHQLQL L++VAK
Sbjct: 468 AHQLQLVLVAVAK 480

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242080863|ref|XP_002445200.1| hypothetical protein SORBIDRAFT_07g005790 [Sorghum bicolor] gi|241941550|gb|EES14695.1| hypothetical protein SORBIDRAFT_07g005790 [Sorghum bicolor]

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 108/195 (55%), Positives = 151/195 (77%)

Query: 31  LRQRLAFHGHDESKDSSNRGNFLELLRFLTDHNEDINVVTFDNAPGNLQMTSNEIKKEIV 90
           LRQ LA  GHDES++S N+GNFLELL +L ++ ED+N V   NAP N ++TS  I+KE++
Sbjct: 192 LRQGLACRGHDESEESLNKGNFLELLNWLAENFEDVNRVGLKNAPKNNKLTSPRIQKELI 251

Query: 91  SCVAIETTNIIINEMGDVLFSLLINESHDISVKEQMVVVLRYVDKNGYVVERFIGIEHIT 150
           +C A ETT +II+++GD  F++L +ES D+  KEQ+ + LRYVDK G VVERF+G+ H+ 
Sbjct: 252 NCCAKETTKLIIDDLGDDYFAILADESSDVYQKEQLALCLRYVDKKGQVVERFLGVVHVG 311

Query: 151 STTSISLKEALDRLFSKHGLSMSRLRGQGYDGASNMQGEFNGLKALILEDNKCPYFIHCF 210
            TTS +LK A++ L  +H LS+SR+RGQGYDGASNM+G  NGLK LI++++   Y+IHCF
Sbjct: 312 DTTSATLKLAIETLLMEHSLSLSRIRGQGYDGASNMKGAVNGLKKLIMDESPSAYYIHCF 371

Query: 211 AHQLQLALISVAKKH 225
           AHQLQL L++VA+++
Sbjct: 372 AHQLQLTLVAVAREN 386

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242080751|ref|XP_002445144.1| hypothetical protein SORBIDRAFT_07g004800 [Sorghum bicolor] gi|241941494|gb|EES14639.1| hypothetical protein SORBIDRAFT_07g004800 [Sorghum bicolor]

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 104/195 (53%), Positives = 151/195 (77%)

Query: 31  LRQRLAFHGHDESKDSSNRGNFLELLRFLTDHNEDINVVTFDNAPGNLQMTSNEIKKEIV 90
           L+Q LAF GHDES++ SNRGNF+ELL++L ++NE+++     NAPGN  +TS +I+KEI+
Sbjct: 180 LKQGLAFRGHDESEEYSNRGNFIELLKWLAENNEEVDKFVLKNAPGNCTLTSPDIQKEII 239

Query: 91  SCVAIETTNIIINEMGDVLFSLLINESHDISVKEQMVVVLRYVDKNGYVVERFIGIEHIT 150
            C A+ET + II E+GD  +++L +ES D+S KEQ+ + LRYVD +G   ERF+GI  + 
Sbjct: 240 QCCAMETRDQIIEEIGDNHYTILADESSDVSHKEQLALCLRYVDNSGRPCERFLGIVLVD 299

Query: 151 STTSISLKEALDRLFSKHGLSMSRLRGQGYDGASNMQGEFNGLKALILEDNKCPYFIHCF 210
            TTS SLKEA++ L  +HGL+M+++RGQGYDGASNM+GE  GLK L+++++   Y++H F
Sbjct: 300 DTTSSSLKEAIESLLIRHGLTMTQIRGQGYDGASNMKGEIKGLKTLVMKESPSAYYVHYF 359

Query: 211 AHQLQLALISVAKKH 225
           AHQLQL L++VAK++
Sbjct: 360 AHQLQLVLVAVAKEN 374

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|19225003|gb|AAL86479.1|AC077693_18 putative transposase [Oryza sativa Japonica Group]

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 106/193 (54%), Positives = 149/193 (77%)

Query: 31  LRQRLAFHGHDESKDSSNRGNFLELLRFLTDHNEDINVVTFDNAPGNLQMTSNEIKKEIV 90
           L Q LAF GHDES++SSNRGNF+ELL++L ++N++++ +   NAPGN  +T + I++EI+
Sbjct: 224 LNQGLAFRGHDESEESSNRGNFIELLKWLAENNKEVDRLVLKNAPGNCILTCSSIQREII 283

Query: 91  SCVAIETTNIIINEMGDVLFSLLINESHDISVKEQMVVVLRYVDKNGYVVERFIGIEHIT 150
            C A ETT  II E+GD  +++L +E  D+S KEQ+ + +RY+DK G V ERF+G+ H+ 
Sbjct: 284 HCCADETTKRIIEELGDDHYAILADECSDLSHKEQLALCVRYIDKLGRVCERFLGVVHVA 343

Query: 151 STTSISLKEALDRLFSKHGLSMSRLRGQGYDGASNMQGEFNGLKALILEDNKCPYFIHCF 210
           STTS +LK+A+  L S H LS S++RGQGYDGASNM+G+ NGLK LI++++   Y+IHCF
Sbjct: 344 STTSAALKKAILTLLSDHHLSPSQIRGQGYDGASNMKGKINGLKTLIMKESPSAYYIHCF 403

Query: 211 AHQLQLALISVAK 223
           AHQLQL L+SVAK
Sbjct: 404 AHQLQLVLVSVAK 416

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116317825|emb|CAH65861.1| OSIGBa0126J24.6 [Oryza sativa Indica Group]

 Score =  226 bits (577), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 101/195 (51%), Positives = 150/195 (76%)

Query: 31  LRQRLAFHGHDESKDSSNRGNFLELLRFLTDHNEDINVVTFDNAPGNLQMTSNEIKKEIV 90
           L+Q LAF G  + K  +NRGNF+ELL++L ++NE+++     NAPGN  +TS +I+KEI+
Sbjct: 254 LQQGLAFRGTTKVKSLTNRGNFIELLKWLAENNEEVDKFVLKNAPGNCTLTSPDIQKEII 313

Query: 91  SCVAIETTNIIINEMGDVLFSLLINESHDISVKEQMVVVLRYVDKNGYVVERFIGIEHIT 150
            C A+ET + I+ E+GD  +++L +ES D+S KEQ+ + LRYVDK+G   ERF+GI  + 
Sbjct: 314 QCCAMETRDQILEEIGDNYYTILADESSDVSHKEQLALCLRYVDKSGRPCERFLGIVQVD 373

Query: 151 STTSISLKEALDRLFSKHGLSMSRLRGQGYDGASNMQGEFNGLKALILEDNKCPYFIHCF 210
            TTS SLKEA++ L ++HGL+M+++RGQGYDGASNM+GE  GLK L+++++   Y++HCF
Sbjct: 374 DTTSSSLKEAIESLLTRHGLTMTQIRGQGYDGASNMKGEIKGLKTLVMKESPSAYYVHCF 433

Query: 211 AHQLQLALISVAKKH 225
           AHQLQL L++VAK++
Sbjct: 434 AHQLQLVLVAVAKEN 448

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
TAIR|locus:2829839	505	AT3G29763 "AT3G29763" [Arabido	0.866	0.386	0.579	2.5e-58
TAIR|locus:2202165	769	AT1G19260 [Arabidopsis thalian	0.866	0.253	0.579	5.1e-58
TAIR|locus:4515102803	592	AT2G06541 [Arabidopsis thalian	0.866	0.329	0.558	2.6e-54
TAIR|locus:2118430	664	AT4G09660 [Arabidopsis thalian	0.755	0.256	0.582	6.7e-49
TAIR|locus:2033523	496	AT1G41920 "AT1G41920" [Arabido	0.853	0.387	0.505	1.6e-47
TAIR|locus:2093847	522	AT3G29450 "AT3G29450" [Arabido	0.311	0.134	0.7	2.2e-44
TAIR|locus:2829849	536	AT3G29765 [Arabidopsis thalian	0.648	0.272	0.595	8.1e-44
TAIR|locus:5019474775	393	AT3G31402 "AT3G31402" [Arabido	0.364	0.208	0.512	6.8e-27
UNIPROTKB|E2R5I7	1073	ZMYM1 "Uncharacterized protein	0.844	0.177	0.297	1.5e-20
UNIPROTKB|Q5SW02	1067	ZMYM1 "Zinc finger MYM-type pr	0.84	0.177	0.301	2.5e-20

TAIR|locus:2829839 AT3G29763 "AT3G29763" [Arabidopsis thaliana (taxid:3702)]

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 113/195 (57%), Positives = 150/195 (76%)

Query:    31 LRQRLAFHGHDESKDSSNRGNFLELLRFLTDHNEDINVVTFDNAPGNLQMTSNEIKKEIV 90
             L Q L F GHDES++S+N+GNFLELL+++   NE +  V   NAP N QMTS  I+K+IV
Sbjct:    53 LHQGLPFRGHDESEESTNKGNFLELLKYIAGQNEVVKKVVLKNAPKNNQMTSPPIQKDIV 112

Query:    91 SCVAIETTNIIINEMGDVLFSLLINESHDISVKEQMVVVLRYVDKNGYVVERFIGIEHIT 150
              C + E T  II EM + +F LL++ES D S KEQM VV R+VDK G V ERFIG+ H+ 
Sbjct:   113 HCFSEEVTRSIIEEMDNDVFGLLVDESADASDKEQMAVVFRFVDKYGVVKERFIGVIHVQ 172

Query:   151 STTSISLKEALDRLFSKHGLSMSRLRGQGYDGASNMQGEFNGLKALILEDNKCPYFIHCF 210
              T+S+SLK A+D LF+K+GLS+ +LRG+GYDGASNM+G+FNGL++LIL++N   Y++HCF
Sbjct:   173 ETSSLSLKSAIDSLFAKYGLSLKKLRGKGYDGASNMKGKFNGLRSLILKENSSAYYVHCF 232

Query:   211 AHQLQLALISVAKKH 225
             AHQLQL +++VAKKH
Sbjct:   233 AHQLQLVVMAVAKKH 247

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2202165 AT1G19260 [Arabidopsis thaliana (taxid:3702)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 113/195 (57%), Positives = 149/195 (76%)

Query:    31 LRQRLAFHGHDESKDSSNRGNFLELLRFLTDHNEDINVVTFDNAPGNLQMTSNEIKKEIV 90
             L Q L F GHDES++S+N+GNF+ELL++    NE +  V   NAP N QMTS  I+K+IV
Sbjct:   185 LHQGLPFRGHDESEESTNKGNFVELLKYTAGQNEVVKKVVLKNAPKNNQMTSPPIQKDIV 244

Query:    91 SCVAIETTNIIINEMGDVLFSLLINESHDISVKEQMVVVLRYVDKNGYVVERFIGIEHIT 150
              C + E T  II EM + +F LL++ES D S KEQM VV R+VDK G V ERFIG+ H+ 
Sbjct:   245 HCFSKEVTRSIIEEMDNDVFGLLVDESADASDKEQMAVVFRFVDKYGVVKERFIGVIHVQ 304

Query:   151 STTSISLKEALDRLFSKHGLSMSRLRGQGYDGASNMQGEFNGLKALILEDNKCPYFIHCF 210
              T+S+SLK A+D LF+K+GLS+ +LRGQGYDGASNM+GEFNGL++LIL+++   Y++HCF
Sbjct:   305 ETSSLSLKSAIDSLFAKYGLSLKKLRGQGYDGASNMKGEFNGLRSLILKESSSAYYVHCF 364

Query:   211 AHQLQLALISVAKKH 225
             AHQLQL +++VAKKH
Sbjct:   365 AHQLQLVVMAVAKKH 379

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:4515102803 AT2G06541 [Arabidopsis thaliana (taxid:3702)]

 Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
 Identities = 109/195 (55%), Positives = 142/195 (72%)

Query:    31 LRQRLAFHGHDESKDSSNRGNFLELLRFLTDHNEDINVVTFDNAPGNLQMTSNEIKKEIV 90
             +RQ L F GHDES DS+NRGNFLEL+++    NE ++ V  +NAP N QM   +I+++IV
Sbjct:   118 VRQGLTFRGHDESVDSANRGNFLELVKYTAGQNEVVSKVVLENAPKNNQMVCPKIQRDIV 177

Query:    91 SCVAIETTNIIINEMGDVLFSLLINESHDISVKEQMVVVLRYVDKNGYVVERFIGIEHIT 150
              C   E    II E+   +F L+++ES DI  KEQMVVV R+VDK+  V ERFIG+ H+ 
Sbjct:   178 HCFVEEVIRSIIQEVDHDVFCLMVDESADIFDKEQMVVVFRFVDKHATVKERFIGLIHVK 237

Query:   151 STTSISLKEALDRLFSKHGLSMSRLRGQGYDGASNMQGEFNGLKALILEDNKCPYFIHCF 210
              T S  LK A+D LF+KHGLS+ ++RGQ YDGASNM+GEFNGL+ LIL +N   Y+IHCF
Sbjct:   238 ETFSAFLKCAIDSLFAKHGLSIKQIRGQDYDGASNMKGEFNGLRYLILRENSSAYYIHCF 297

Query:   211 AHQLQLALISVAKKH 225
             AHQLQL +++VAKKH
Sbjct:   298 AHQLQLVVVAVAKKH 312

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2118430 AT4G09660 [Arabidopsis thaliana (taxid:3702)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 99/170 (58%), Positives = 130/170 (76%)

Query:    31 LRQRLAFHGHDESKDSSNRGNFLELLRFLTDHNEDINVVTFDNAPGNLQMTSNEIKKEIV 90
             +RQ L+F GHDES++S+N+GNFLELL++    NE +  V   NAP N QMTS  I+K+IV
Sbjct:   149 MRQGLSFRGHDESEESTNKGNFLELLKYTAGQNEVVKKVVLKNAPKNNQMTSPPIQKDIV 208

Query:    91 SCVAIETTNIIINEMGDVLFSLLINESHDISVKEQMVVVLRYVDKNGYVVERFIGIEHIT 150
              C + E T  II EM + +F LL++ES D S KEQM VV R+VDK G V ERFIG+ H+ 
Sbjct:   209 HCFSEEVTRSIIEEMDNDVFGLLVDESADASNKEQMTVVFRFVDKYGVVKERFIGVIHVK 268

Query:   151 STTSISLKEALDRLFSKHGLSMSRLRGQGYDGASNMQGEFNGLKALILED 200
              T+S+SLK A+D LF+K+GLS+ +LRGQGYDGASNM+GEFNGL++LIL++
Sbjct:   269 ETSSLSLKSAIDSLFAKYGLSLKKLRGQGYDGASNMKGEFNGLRSLILKE 318

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2033523 AT1G41920 "AT1G41920" [Arabidopsis thaliana (taxid:3702)]

 Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
 Identities = 100/198 (50%), Positives = 143/198 (72%)

Query:    31 LRQRLAFHGHDESKDSSNRGNFLELLRFLTDHNEDINVVTFDNAPGNLQMTSNEIKKEIV 90
             +RQRL F GHDES +S+NRGNFLEL+++    NE I+ V  +NAP N QM  +E+ + ++
Sbjct:     8 VRQRLPFRGHDESDESANRGNFLELVKYTVGQNEVISKVVLENAPKNNQMVFDEMSEPLI 67

Query:    91 SCVA--IETTNIIINEMGD--VLFSLLINESHDISVKEQMVVVLRYVDKNGYVVERFIGI 146
                   + ++ ++++ + D  V++   +  +  +S KEQM VV R+VDK+G V ERFIG+
Sbjct:    68 PETRDPVPSSFLLLDLILDYPVVWQQTVQSN--VSDKEQMAVVFRFVDKHGTVKERFIGL 125

Query:   147 EHITSTTSISLKEALDRLFSKHGLSMSRLRGQGYDGASNMQGEFNGLKALILEDNKCPYF 206
              H+  T+S SLK A+D LF+K GLSM +LRGQGYDGA+NM+GEFN L++LIL +N   Y+
Sbjct:   126 IHVKETSSASLKCAIDSLFAKRGLSMKQLRGQGYDGANNMKGEFNWLRSLILRENSSAYY 185

Query:   207 IHCFAHQLQLALISVAKK 224
             IHCFAHQLQL +++VAKK
Sbjct:   186 IHCFAHQLQLVVVAVAKK 203

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2093847 AT3G29450 "AT3G29450" [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 2.2e-44, Sum P(2) = 2.2e-44
 Identities = 49/70 (70%), Positives = 61/70 (87%)

Query:   156 SLKEALDRLFSKHGLSMSRLRGQGYDGASNMQGEFNGLKALILEDNKCPYFIHCFAHQLQ 215
             SLK A+D LF+K GLS+ +LRGQGYDGASNM+GEFNGL++LIL +N   Y+IHCFAHQLQ
Sbjct:   194 SLKCAIDSLFAKLGLSIKQLRGQGYDGASNMKGEFNGLRSLILRENSSAYYIHCFAHQLQ 253

Query:   216 LALISVAKKH 225
             L +++VAKKH
Sbjct:   254 LVVVAVAKKH 263

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2829849 AT3G29765 [Arabidopsis thaliana (taxid:3702)]

 Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
 Identities = 87/146 (59%), Positives = 116/146 (79%)

Query:    80 MTSNEIKKEIVSCVAIETTNIIINEMGDVLFSLLINESHDISVKEQMVVVLRYVDKNGYV 139
             MTS  I+K+IV C + E T  II EM + +F LL++ES D S KEQM VV R+VDK G V
Sbjct:     1 MTSPPIQKDIVHCFSEEVTRSIIEEMDNDVFGLLVDESADASDKEQMAVVFRFVDKYGVV 60

Query:   140 VERFIGIEHITSTTSISLKEALDRLFSKHGLSMSRLRGQGYDGASNMQGEFNGLKALILE 199
              ERFIG+ H+  T+S+SLK A+D LF+K+GLS+ +LRG+GYDGASNM+G+FNGL++LIL+
Sbjct:    61 KERFIGVIHVQETSSLSLKSAIDSLFAKYGLSLKKLRGKGYDGASNMKGKFNGLRSLILK 120

Query:   200 DNKCPYFIHCFAHQLQLALISVAKKH 225
             +N   Y++HCFAHQLQL +++VAKKH
Sbjct:   121 ENSSAYYVHCFAHQLQLVVMAVAKKH 146

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:5019474775 AT3G31402 "AT3G31402" [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 6.8e-27, Sum P(2) = 6.8e-27
 Identities = 42/82 (51%), Positives = 61/82 (74%)

Query:   101 IINEMGDVLFSLLINESHDISVKEQMVVVLRYVDKNGYVVERFIGIEHITSTTSISLKEA 160
             +I E+   +F LL++ES D+S KEQM +V R+ DK+G V ERF+ I H+  T++ISLK A
Sbjct:    90 VIEEIDHNVFGLLVDESADVSDKEQMTLVFRFFDKSGIVKERFLSIIHVKETSAISLKSA 149

Query:   161 LDRLFSKHGLSMSRLRGQGYDG 182
             +D LF+K+ L++ + RGQGYDG
Sbjct:   150 IDDLFAKYRLNIKKGRGQGYDG 171

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E2R5I7 ZMYM1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 255 (94.8 bits), Expect = 1.5e-20, P = 1.5e-20
 Identities = 59/198 (29%), Positives = 104/198 (52%)

Query:    32 RQRLAFHGHDESKDSSNRGNFLELLRFLT-DHNEDINVVTFDNAPGNLQMTSNEIKKEIV 90
             +Q L   G+D+S  S N+GNFLELL     D  E+I      N+  +    S +I+ +I+
Sbjct:   498 KQCLPLRGNDQSISSMNKGNFLELLEIRAKDKGEEI--FRLMNSQVDFY-NSTQIQNDII 554

Query:    91 SCVAIETTNIIINEMG-DVLFSLLINESHDISVKEQMVVVLRYVDKNGYVV---ERFIGI 146
               +  E    I++E+     FS++ +E+ D + KEQ+ + +RY  K    +   ERF+G 
Sbjct:   555 EIIKTEMLQDIVDEINVSSAFSIICDETTDSATKEQLAIYVRYPQKMSKAILIKERFLGF 614

Query:   147 EHITSTTSISLKEALDRLFSKHGLSMSRLRGQGYDGASNMQGEFNGLKALILEDNKCPYF 206
               +   +   L   +     + G+ ++++ GQ YD  +N++G+FN + A   ++     +
Sbjct:   615 IDVKEMSGTKLHRTIKTYLQQIGVDLNKICGQAYDSTANLRGKFNKIAAEFKKEEPRALY 674

Query:   207 IHCFAHQLQLALISVAKK 224
             IHC+AH L LA+I   K+
Sbjct:   675 IHCYAHFLDLAVIRFCKE 692

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q5SW02 ZMYM1 "Zinc finger MYM-type protein 1" [Homo sapiens (taxid:9606)]

 Score = 253 (94.1 bits), Expect = 2.5e-20, P = 2.5e-20
 Identities = 60/199 (30%), Positives = 103/199 (51%)

Query:    32 RQRLAFHGHDESKDSSNRGNFLELLRFLT-DHNEDINVVTFDNAPGNLQM-TSNEIKKEI 89
             +Q L   G+D+S  S N+GNFLELL     D  E+    TF      +    S +I+ +I
Sbjct:   491 KQCLPLRGNDQSVSSVNKGNFLELLEMRAKDKGEE----TFRLMNSQVDFYNSTQIQSDI 546

Query:    90 VSCVAIETTNIIINEMGDV-LFSLLINESHDISVKEQMVVVLRYVDKNGYVV---ERFIG 145
             +  +  E    I+NE+ D   FS++ +E+ + ++KEQ+ + +RY  K+   +   ERF+G
Sbjct:   547 IEIIKTEMLQDIVNEINDSSAFSIICDETINSAMKEQLSICVRYPQKSSKAILIKERFLG 606

Query:   146 IEHITSTTSISLKEALDRLFSKHGLSMSRLRGQGYDGASNMQGEFNGLKALILEDNKCPY 205
                    T   L   +     + G+ M ++ GQ YD  +N++ +FN + A   ++     
Sbjct:   607 FVDTEEMTGTHLHRTIKTYLQQIGVDMDKIHGQAYDSTTNLKIKFNKIAAEFKKEEPRAL 666

Query:   206 FIHCFAHQLQLALISVAKK 224
             +IHC+AH L L++I   K+
Sbjct:   667 YIHCYAHFLDLSIIRFCKE 685

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00130851 hypothetical protein (788 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	225
pfam14291	179	pfam14291, DUF4371, Domain of unknown function (DU	1e-47

>gnl|CDD|222655 pfam14291, DUF4371, Domain of unknown function (DUF4371)

 Score =  154 bits (391), Expect = 1e-47
 Identities = 71/184 (38%), Positives = 90/184 (48%), Gaps = 61/184 (33%)

Query: 9   IRDMMKKKKMMILVVNFNPFCWLRQRLAFHGHDESKDSSNRGNFLELLRFLTDHNEDINV 68
                 +    I    F     LRQ LAF GHDES++S N+GNF                
Sbjct: 57  KAQYKARLNYSIDCARF----LLRQGLAFRGHDESEESLNKGNF---------------- 96

Query: 69  VTFDNAPGNLQMTSNEIKKEIVSCVAIETTNIIINEMGDVLFSLLINESHDISVKEQMVV 128
                              E++  +A                        D+S KEQM V
Sbjct: 97  ------------------LELLEWLA-----------------------EDVSQKEQMAV 115

Query: 129 VLRYVDKNGYVVERFIGIEHITSTTSISLKEALDRLFSKHGLSMSRLRGQGYDGASNMQG 188
           VLRYVDK G V ERF+G+ H+  TTS++LK A+D L +KHGLS+S++RGQGYDGASNM+G
Sbjct: 116 VLRYVDKKGQVKERFLGVVHVEETTSLTLKSAIDSLLAKHGLSLSKVRGQGYDGASNMKG 175

Query: 189 EFNG 192
           EFNG
Sbjct: 176 EFNG 179

Length = 179

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	225
PF14291	235	DUF4371: Domain of unknown function (DUF4371)	100.0
PF04937	153	DUF659: Protein of unknown function (DUF 659); Int	99.67
KOG1121	641	consensus Tam3-transposase (Ac family) [Replicatio	99.32
PF00872	381	Transposase_mut: Transposase, Mutator family; Inte	84.5

>PF14291 DUF4371: Domain of unknown function (DUF4371)

Probab=100.00  E-value=3.2e-48  Score=321.24  Aligned_cols=185  Identities=41%  Similarity=0.615  Sum_probs=177.0

Q ss_pred             hHHHHHHHHHhHHHHHHHHHHHHH-hhcCcccccCCCCCCCCCcccHHHHHHhhhccCcchhhhhhccCCCcccccChhH
Q 035734            7 EHIRDMMKKKKMMILVVNFNPFCW-LRQRLAFHGHDESKDSSNRGNFLELLRFLTDHNEDINVVTFDNAPGNLQMTSNEI   85 (225)
Q Consensus         7 ~~~~~~~~~~~~~~l~~~~~~~~~-~~~~lp~rg~~~~~~~~~~gnf~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~   85 (225)
                      ...++...++||++|++++++++| |+||||||||++..++.|+|||++|+++++++||.+++|+...++.+..|+++++
T Consensus        50 ~~~~~~~~~~nR~~L~~ii~~i~fL~~QgLa~RGh~e~~~s~n~GNFl~ll~l~~~~d~~l~~~~~~~~~~~~~~~s~~i  129 (235)
T PF14291_consen   50 QKQRKEEIEENRQYLKRIIDVILFLARQGLAFRGHDESEDSLNNGNFLELLELLAKYDPELKKHLSKNAPKNAKYSSKTI  129 (235)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCccccccccccHHHHHHHHHhhcccchhhhhcccccceeccHHHH
Confidence            445667788999999999999999 9999999999999999999999999999999999999998788889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccceeEEEecccCCCcchhhheeeeeeeccCceeeeeeeceeecccCCHHHHHHHHHHHH
Q 035734           86 KKEIVSCVAIETTNIIINEMGDVLFSLLINESHDISVKEQMVVVLRYVDKNGYVVERFIGIEHITSTTSISLKEALDRLF  165 (225)
Q Consensus        86 ~~~~i~~~~~~~~~~i~~~l~~~~fSi~~D~~td~~~~~~l~v~vr~vd~~~~~~e~~L~~~~l~~~tae~i~~~i~~~L  165 (225)
                      ++++ +.++..+++.|.+++++++|||++||+||+++.+||+|++||||.++.++|+||||.++++.||++|++.|.++|
T Consensus       130 q~~i-~~~a~~v~~~I~~~v~~~~FSii~DettDis~~eQl~i~vRyv~~~~~i~E~Fl~f~~~~~~ta~~l~~~i~~~L  208 (235)
T PF14291_consen  130 QNEI-EILADHVRQSIVEEVKSKYFSIIVDETTDISNKEQLSICVRYVDKDGKIKERFLGFVELEDTTAESLFNAIKDVL  208 (235)
T ss_pred             HHHH-HHHHHHHHHHHHhhccccceeeeeeccccccccchhhheeeeeccCcceeeeeeeeeccCCccHHHHHHHHHHHH
Confidence            9998 999999999999999989999999999999999999999999998899999999999999999999999999999


Q ss_pred             hhCCCCCCCeEEEeccCccccccchhH
Q 035734          166 SKHGLSMSRLRGQGYDGASNMQGEFNG  192 (225)
Q Consensus       166 ~~~~i~~~~~~~~~~Dgas~m~g~~~g  192 (225)
                      +++||++++|+||+|||||+|+|..+|
T Consensus       209 ~~~~l~~~~~~gq~yDgas~M~G~~~G  235 (235)
T PF14291_consen  209 EKLGLDLSNCRGQCYDGASNMSGKHNG  235 (235)
T ss_pred             HHcCCCHHHcCcccccChHhheeccCC
Confidence            999999999999999999999999886

>PF04937 DUF659: Protein of unknown function (DUF 659); InterPro: IPR007021 These are transposase-like proteins with no known function

Probab=99.67  E-value=4.2e-16  Score=120.65  Aligned_cols=126  Identities=19%  Similarity=0.196  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHHHHHH---hhccceeEEEecccCCCcchhhheeeeeeeccCceeeeeeeceeeccc--CCHHHHHHHH
Q 035734           87 KEIVSCVAIETTNIIIN---EMGDVLFSLLINESHDISVKEQMVVVLRYVDKNGYVVERFIGIEHITS--TTSISLKEAL  161 (225)
Q Consensus        87 ~~~i~~~~~~~~~~i~~---~l~~~~fSi~~D~~td~~~~~~l~v~vr~vd~~~~~~e~~L~~~~l~~--~tae~i~~~i  161 (225)
                      ..+++.-..++++.+..   .-...-.||++|+|||..+...+.+.+..-.     ...||..+..++  +||+.|++.+
T Consensus         8 ~~lL~~~~~~v~~~~~~~k~~w~~~Gcsi~~DgWtd~~~~~lInf~v~~~~-----g~~Flksvd~s~~~~~a~~l~~ll   82 (153)
T PF04937_consen    8 GPLLDKEYKEVKEQVKEHKKSWKRTGCSIMSDGWTDRKGRSLINFMVYCPE-----GTVFLKSVDASSIIKTAEYLFELL   82 (153)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCEEEEEecCcCCCCCeEEEEEEEccc-----ccEEEEEEecccccccHHHHHHHH
Confidence            33444444554444432   2222458999999999999888888776542     246788888876  7999999999


Q ss_pred             HHHHhhCCCCCCCeEEEeccCccccccchhHHHHHHHHhCCCcEEecchhHHHHHHHHHHhh
Q 035734          162 DRLFSKHGLSMSRLRGQGYDGASNMQGEFNGLKALILEDNKCPYFIHCFAHQLQLALISVAK  223 (225)
Q Consensus       162 ~~~L~~~~i~~~~~~~~~~Dgas~m~g~~~gl~~~l~~~~p~~~~~~C~aH~lnL~v~~~~~  223 (225)
                      .+++++.|-  +|++.+.+|++++|.++    ..+|.+++|.+++.+|.||.+||.++|..+
T Consensus        83 ~~vIeeVG~--~nVvqVVTDn~~~~~~a----~~~L~~k~p~ifw~~CaaH~inLmledi~k  138 (153)
T PF04937_consen   83 DEVIEEVGE--ENVVQVVTDNASNMKKA----GKLLMEKYPHIFWTPCAAHCINLMLEDIGK  138 (153)
T ss_pred             HHHHHHhhh--hhhhHHhccCchhHHHH----HHHHHhcCCCEEEechHHHHHHHHHHHHhc
Confidence            999999984  69999999999999766    357788899999999999999999999764

>KOG1121 consensus Tam3-transposase (Ac family) [Replication, recombination and repair]

Probab=99.32  E-value=3.1e-11  Score=113.41  Aligned_cols=172  Identities=17%  Similarity=0.195  Sum_probs=126.0

Q ss_pred             HHHH-hhcCcccccCCCCCCCCCcccHHHHHHhhhccCcchhhhhhccCCCcccccChhHHHHHHHHHHHHHHHHHHHhh
Q 035734           27 PFCW-LRQRLAFHGHDESKDSSNRGNFLELLRFLTDHNEDINVVTFDNAPGNLQMTSNEIKKEIVSCVAIETTNIIINEM  105 (225)
Q Consensus        27 ~~~~-~~~~lp~rg~~~~~~~~~~gnf~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~~i~~~l  105 (225)
                      +..+ ..+++||+-.++.       .|+.++..+.+..               ...++.+....+..++...+..+...+
T Consensus       103 ~~~~ii~~~lp~~~ve~~-------~~~~~~~~~~P~~---------------~~~~~~t~~~~~~~~~~~~k~~~~~~~  160 (641)
T KOG1121|consen  103 IARMIILHGLPLSTVEEP-------GFRELLKHLNPNY---------------KLPSRSTLEADVLKIYEAEKPKLKEIL  160 (641)
T ss_pred             HHHHHHhcCCChhhccch-------hHHHHHHhcCCCc---------------ccCChhHHHHHHHHHHHHHHHHHHHHH
Confidence            3667 9999999987754       7777777665442               223333333333333343455555555


Q ss_pred             cc--ceeEEEecccCCC-cchhhheeeeeeeccCceeeeeeeceeecccCCHHHHHHHHHHHHhhCCCCCCCeEEEeccC
Q 035734          106 GD--VLFSLLINESHDI-SVKEQMVVVLRYVDKNGYVVERFIGIEHITSTTSISLKEALDRLFSKHGLSMSRLRGQGYDG  182 (225)
Q Consensus       106 ~~--~~fSi~~D~~td~-~~~~~l~v~vr~vd~~~~~~e~~L~~~~l~~~tae~i~~~i~~~L~~~~i~~~~~~~~~~Dg  182 (225)
                      ..  +++++++|.|++. .+..|+++++||+|.+|+++..++++.-.+.++++.++..+..++.+|+|. .++..++.||
T Consensus       161 ~~~~~~v~lT~d~w~~~~~~~~y~~~t~h~id~~~~l~~~il~~~~~~~~~~~~i~~~~~~~~~~~~i~-~kv~~~~~~n  239 (641)
T KOG1121|consen  161 EKIIGRVSLTTDLWSDSGTDEGYMVLTAHYIDRDWELHNKILSFCIPPPHLGKALASVLNECLLEWGIE-KKVFSITVDN  239 (641)
T ss_pred             HccCCceEEEEeeecCCCCCcceEEEEEEEeccchHhhhheeeeecCCcchHHHHHHHHHHHHHhhChh-heEEEEeecc
Confidence            54  8999999999987 678999999999999999999999999444599999999999999999998 8999999999


Q ss_pred             ccccccchhHHHHHHHHhC-----CCcEEecchhHHHHHHHHHHhh
Q 035734          183 ASNMQGEFNGLKALILEDN-----KCPYFIHCFAHQLQLALISVAK  223 (225)
Q Consensus       183 as~m~g~~~gl~~~l~~~~-----p~~~~~~C~aH~lnL~v~~~~~  223 (225)
                        ........+...+....     ...++++|.+|.+++.++++++
T Consensus       240 --~~~~~~~~~~~~l~~~~~~~~~~~~~~~~C~~~~~~~~v~~~l~  283 (641)
T KOG1121|consen  240 --VNVSNIETLRDHLKSSNALLLLGKFFHVRCFAHILNLIVQEGLK  283 (641)
T ss_pred             --cchhHHHHhhHHHhhcccceecceeeeeehhhhhhhHHHHHHHH
Confidence              21122222233333322     2356999999999999999873

>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=84.50  E-value=0.31  Score=43.32  Aligned_cols=128  Identities=15%  Similarity=0.091  Sum_probs=83.1

Q ss_pred             cChhHHHHHHHHHHHHHHHHHHHhhccc-eeEEEecccCCCcc-----hhhheeeeeeeccCceeeeeeeceeecccCCH
Q 035734           81 TSNEIKKEIVSCVAIETTNIIINEMGDV-LFSLLINESHDISV-----KEQMVVVLRYVDKNGYVVERFIGIEHITSTTS  154 (225)
Q Consensus        81 ~s~~~~~~~i~~~~~~~~~~i~~~l~~~-~fSi~~D~~td~~~-----~~~l~v~vr~vd~~~~~~e~~L~~~~l~~~ta  154 (225)
                      .|+.+..++.+.+.+++..--...|... +.-|.+|...-.-.     .+.-.+++-=|+.+|  +.++||+...+.-++
T Consensus       133 ~S~s~vSri~~~~~~~~~~w~~R~L~~~~y~~l~iD~~~~kvr~~~~~~~~~~~v~iGi~~dG--~r~vLg~~~~~~Es~  210 (381)
T PF00872_consen  133 VSKSTVSRITKQLDEEVEAWRNRPLESEPYPYLWIDGTYFKVREDGRVVKKAVYVAIGIDEDG--RREVLGFWVGDRESA  210 (381)
T ss_pred             cCchhhhhhhhhhhhhHHHHhhhccccccccceeeeeeecccccccccccchhhhhhhhhccc--ccceeeeecccCCcc
Confidence            5666666677777777666666667665 77899998653211     111223333445555  457889886654322


Q ss_pred             HHHHHHHHHHHhhCCCCCCCeEEEeccCccccccchhHHHHHHHHhCCCcEEecchhHHHHHHHHH
Q 035734          155 ISLKEALDRLFSKHGLSMSRLRGQGYDGASNMQGEFNGLKALILEDNKCPYFIHCFAHQLQLALIS  220 (225)
Q Consensus       155 e~i~~~i~~~L~~~~i~~~~~~~~~~Dgas~m~g~~~gl~~~l~~~~p~~~~~~C~aH~lnL~v~~  220 (225)
                       .-...+..-|.+-|+.  .+.-+++||..-+.       .-+.+.+|.+.+-.|..|....+...
T Consensus       211 -~~W~~~l~~L~~RGl~--~~~lvv~Dg~~gl~-------~ai~~~fp~a~~QrC~vH~~RNv~~~  266 (381)
T PF00872_consen  211 -ASWREFLQDLKERGLK--DILLVVSDGHKGLK-------EAIREVFPGAKWQRCVVHLMRNVLRK  266 (381)
T ss_pred             -CEeeecchhhhhcccc--ccceeecccccccc-------ccccccccchhhhhheechhhhhccc
Confidence             3344556667888885  57778889966444       45667889999999999988665544

Transposases have been grouped into various families [, , ]. The mutator family of transposases consists of a number of elements that include, mutator from maize, IsT2 from Thiobacillus ferrooxidans, Is256 from Staphylococcus aureus, Is1201 from Lactobacillus helveticus, Is1081 from Mycobacterium bovis, IsRm3 from Rhizobium meliloti and others. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	225
2bw3_A	534	Transposase; DNA recombination, transposition; 2.0	99.93

>2bw3_A Transposase; DNA recombination, transposition; 2.0A {Musca domestica} SCOP: a.270.1.1 c.55.3.12 PDB: 2bw3_B

Probab=99.93  E-value=1.3e-25  Score=204.54  Aligned_cols=175  Identities=17%  Similarity=0.187  Sum_probs=146.6

Q ss_pred             HHHH-hhcCcccccCCCCCCCCCcccHHHHHHhhhccCcchhhhhhccCCCcccccChhHHHHHHHHHHHHHHHHHHHhh
Q 035734           27 PFCW-LRQRLAFHGHDESKDSSNRGNFLELLRFLTDHNEDINVVTFDNAPGNLQMTSNEIKKEIVSCVAIETTNIIINEM  105 (225)
Q Consensus        27 ~~~~-~~~~lp~rg~~~~~~~~~~gnf~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~~i~~~l  105 (225)
                      +++| +++++||+..+.       ++|+.+++.+.+.+|.+.+.+.    .+...+|+......+..++..+++++++++
T Consensus        23 l~~~i~~~~~Pf~~ve~-------~~F~~~l~~l~~~~p~~~~~~~----~~~~~ps~~~~~~~i~~~~~~~~~~l~~~l   91 (534)
T 2bw3_A           23 CAQWVVRDCRPFSAVSG-------SGFIDMIKFFIKVKAEYGEHVN----VEELLPSPITLSRKVTSDAKEKKALIGREI   91 (534)
T ss_dssp             HHHHHHHTTCCGGGGGC-------HHHHHHHHHHHHHHHHHCSCBC----HHHHSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCcchhhCC-------HHHHHHHHHHHhhhhhhccccc----hhhcCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence            4888 999999998774       4999999999877776644221    122345666666666677888999999999


Q ss_pred             cc----ceeEEEecccCCC-cchhhheeeeeeeccCceeeeeeeceeeccc--CCHHHHHHHHHHHHhhCCCCCCCeEEE
Q 035734          106 GD----VLFSLLINESHDI-SVKEQMVVVLRYVDKNGYVVERFIGIEHITS--TTSISLKEALDRLFSKHGLSMSRLRGQ  178 (225)
Q Consensus       106 ~~----~~fSi~~D~~td~-~~~~~l~v~vr~vd~~~~~~e~~L~~~~l~~--~tae~i~~~i~~~L~~~~i~~~~~~~~  178 (225)
                      +.    ++|||++|+|||. .+.+||+|++||+ ++|.+++++|++.++++  +||++|++.|.+++++|||+..+++++
T Consensus        92 ~~~~~~~~~sl~~D~wt~~~~~~~~l~i~v~~i-~~~~~~~~~L~~~~~~~~~~t~~~i~~~i~~~l~~~~l~~~~~v~~  170 (534)
T 2bw3_A           92 KSAVEKDGASATIDLWTDNYIKRNFLGVTLHYH-ENNELRDLILGLKSLDFERSTAENIYKKLKAIFSQFNVEDLSSIKF  170 (534)
T ss_dssp             HHHHHTTCCEEEEEEEEETTTTEEEEEEEEEEE-ETTEEEEEEEEEEEECGGGCSHHHHHHHHHHHHHTTTCCCCTTCEE
T ss_pred             HhhhcCCceEEEEecccCCCCCcceeEEEEEEe-eCCceEEEEEeEeecCCCCCCHHHHHHHHHHHHHHcCCCcccceeE
Confidence            86    6899999999998 5789999999999 58999999999999984  999999999999999999985567778


Q ss_pred             eccCccccccchhHHHHHHHHhCCCcEEecchhHHHHHHHHHHhhh
Q 035734          179 GYDGASNMQGEFNGLKALILEDNKCPYFIHCFAHQLQLALISVAKK  224 (225)
Q Consensus       179 ~~Dgas~m~g~~~gl~~~l~~~~p~~~~~~C~aH~lnL~v~~~~~~  224 (225)
                      ++|||++|.++.++           ..+++|++|.+||++++++++
T Consensus       171 vtDnasn~~~~~~~-----------~~~i~C~~H~lnLi~~~~l~~  205 (534)
T 2bw3_A          171 VTDRGANVVKSLAN-----------NIRINCSSHLLSNVLENSFEE  205 (534)
T ss_dssp             EECCCHHHHHHTTT-----------SEEEECHHHHHHHHHHHHHHH
T ss_pred             ECCCHHHHHHHHhc-----------CcccccHHHHHHHHHHHHhhh
Confidence            88999999877553           379999999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	225
d2bw3a2	447	c.55.3.12 (A:163-609) Transposase Hermes, catalyti	6e-08

>d2bw3a2 c.55.3.12 (A:163-609) Transposase Hermes, catalytic domain {House fly (Musca domestica) [TaxId: 7370]} Length = 447

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Hermes transposase-like
domain: Transposase Hermes, catalytic domain
species: House fly (Musca domestica) [TaxId: 7370]

 Score = 50.1 bits (118), Expect = 6e-08
 Identities = 16/110 (14%), Positives = 42/110 (38%), Gaps = 14/110 (12%)

Query: 117 SHDISVKEQMVVVLRYVDKNGYVVERFIGIEHIT--STTSISLKEALDRLFSKHGLSMSR 174
           + +   +  + V L Y + N  + +  +G++ +    +T+ ++ + L  +FS+  +    
Sbjct: 21  TDNYIKRNFLGVTLHYHE-NNELRDLILGLKSLDFERSTAENIYKKLKAIFSQFNVEDLS 79

Query: 175 LRGQGYDGASNMQGEFNGLKALILEDNKCPYFIHCFAHQLQLALISVAKK 224
                 D  +N+                    I+C +H L   L +  ++
Sbjct: 80  SIKFVTDRGANVVKSLANN-----------IRINCSSHLLSNVLENSFEE 118

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	225
d2bw3a2	447	Transposase Hermes, catalytic domain {House fly (M	99.86

>d2bw3a2 c.55.3.12 (A:163-609) Transposase Hermes, catalytic domain {House fly (Musca domestica) [TaxId: 7370]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Hermes transposase-like
domain: Transposase Hermes, catalytic domain
species: House fly (Musca domestica) [TaxId: 7370]

Probab=99.86  E-value=3.9e-22  Score=172.92  Aligned_cols=113  Identities=18%  Similarity=0.161  Sum_probs=99.6

Q ss_pred             HHHHhhccceeEEEecccCC-CcchhhheeeeeeeccCceeeeeeeceeecc-c-CCHHHHHHHHHHHHhhCCCCCCCeE
Q 035734          100 IIINEMGDVLFSLLINESHD-ISVKEQMVVVLRYVDKNGYVVERFIGIEHIT-S-TTSISLKEALDRLFSKHGLSMSRLR  176 (225)
Q Consensus       100 ~i~~~l~~~~fSi~~D~~td-~~~~~~l~v~vr~vd~~~~~~e~~L~~~~l~-~-~tae~i~~~i~~~L~~~~i~~~~~~  176 (225)
                      +|++.+....+|+++|+||+ .++.+||+|++||++ ++.+++++||+.+++ + +||++|++.|.+++++|||++.+++
T Consensus         3 ~~k~~~~~~~~s~~~D~Wts~~~~~~~l~v~~~yi~-~~~~~~~~L~~~~~~~~~~tg~~i~~~l~~~l~~~~i~~~~~~   81 (447)
T d2bw3a2           3 EIKSAVEKDGASATIDLWTDNYIKRNFLGVTLHYHE-NNELRDLILGLKSLDFERSTAENIYKKLKAIFSQFNVEDLSSI   81 (447)
T ss_dssp             HHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEEEE-TTEEEEEEEEEEEECGGGCSHHHHHHHHHHHHHTTTCCCCTTC
T ss_pred             hHHHHHHcCCEEEEEEeecCCCCCeEEEEEEEEEEE-CCceeEEEEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCcceEE
Confidence            34555556789999999997 456799999999997 589999999999986 3 8999999999999999999999999


Q ss_pred             EEeccCccccccchhHHHHHHHHhCCCcEEecchhHHHHHHHHHHhhh
Q 035734          177 GQGYDGASNMQGEFNGLKALILEDNKCPYFIHCFAHQLQLALISVAKK  224 (225)
Q Consensus       177 ~~~~Dgas~m~g~~~gl~~~l~~~~p~~~~~~C~aH~lnL~v~~~~~~  224 (225)
                      ++++|||++|.+.           .+...++||++|+|||++.+++++
T Consensus        82 ~~~~D~a~n~~~~-----------~~~~~~i~C~aH~Lnl~v~d~~~~  118 (447)
T d2bw3a2          82 KFVTDRGANVVKS-----------LANNIRINCSSHLLSNVLENSFEE  118 (447)
T ss_dssp             EEEECCCHHHHHH-----------TTTSEEEECHHHHHHHHHHHHHHH
T ss_pred             EEEcCCcHhhHHH-----------hhccccccchhhhhhhhhHHHHhh
Confidence            9999999999764           456789999999999999998864