Citrus Sinensis ID: 035736

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-
Protein Sequence
MSTSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLIL
Secondary Structure (PSIPRED)
cccccEEEEEcccccEEEEcHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHcccHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEccccEEEEcHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHccHHHHHHHHc
Coil and Loop (DISEMBL)
mstskkitlkssdgeafevDEAVALESQTIKHMIeddcadngiplpnvTSKILSKVIEYCKKHVeasksddratsgvdddlkawdTDFVKVDQATLFDLIL
Flexible Loop (DISEMBL)
mstskkitlkssdgeafevDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHveasksddratsgvdddlkAWDTDFVKVDQATLFDLIL
Low Complexity Region (SEG)
MSTSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLIL
Disordered region (IsUnstruct)
**********************VALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKK***************************************
Disordered Region (DISOPRED)
***SKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLIL
Disordered Region (DISEMBL)
MSTSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVE***********VDDDLKAWDTDFVKVDQATLFDLIL
Disordered Region (DISPRO)
****KKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVE************DDDLKAWDTDFVKVDQATLFDLIL
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSTSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLIL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	101	2.2.26 [Sep-21-2011]
Q39255	160	SKP1-like protein 1A OS=A	yes	no	0.980	0.618	0.745	3e-39
Q9FHW7	171	SKP1-like protein 1B OS=A	no	no	1.0	0.590	0.692	2e-38
Q9LNT9	163	SKP1-like protein 4 OS=Ar	no	no	0.980	0.607	0.708	2e-35
Q9SL93	163	SKP1-like protein 3 OS=Ar	no	no	0.970	0.601	0.696	1e-33
O49484	152	SKP1-like protein 11 OS=A	no	no	0.930	0.618	0.575	7e-26
Q9LSX8	152	SKP1-like protein 10 OS=A	no	no	0.940	0.625	0.594	9e-26
O65674	152	SKP1-like protein 12 OS=A	no	no	0.920	0.611	0.58	2e-25
Q9M1X5	154	SKP1-like protein 13 OS=A	no	no	0.930	0.610	0.58	2e-25
Q9LSX9	153	SKP1-like protein 9 OS=Ar	no	no	0.930	0.614	0.594	2e-24
Q9LSY0	125	SKP1-like protein 7 OS=Ar	no	no	0.920	0.744	0.530	2e-22

>sp|Q39255|SKP1A_ARATH SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1

 Score =  160 bits (404), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 76/102 (74%), Positives = 88/102 (86%), Gaps = 3/102 (2%)

Query: 3   TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKK 62
           ++KKI LKSSDGE+FEV+EAVALESQTI HM+EDDC DNG+PLPNVTSKIL+KVIEYCK+
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query: 63  HVEASKSDDRATSGV---DDDLKAWDTDFVKVDQATLFDLIL 101
           HVEA+ S   A  G    DDDLKAWD DF+K+DQATLF+LIL
Sbjct: 62  HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELIL 103

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1. SCF(UFO) is required for vegetative and floral organ development as well as for male gametogenesis. SCF(TIR1) is involved in auxin signaling pathway. SCF(COI1) regulates responses to jasmonates. SCF(EID1) and SCF(AFR) are implicated in phytochrome A light signaling. SCF(ADO1), SCF(ADO2), SCF(ADO3) are related to the circadian clock. SCF(ORE9) seems to be involved in senescence. SCF(EBF1/EBF2) may regulate ethylene signaling. Plays a role during embryogenesis and early postembryonic development, especially during cell elongation and division. Contributes to the correct chromosome segregation during tetrad formation.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHW7|SKP1B_ARATH SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1

 Score =  157 bits (397), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 79/114 (69%), Positives = 90/114 (78%), Gaps = 13/114 (11%)

Query: 1   MSTSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYC 60
           MST +KITLKSSDGE FE+DEAVALESQTIKHMIEDDC DNGIPLPNVTSKILSKVIEYC
Sbjct: 1   MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYC 60

Query: 61  KKHVEASKSDD-------------RATSGVDDDLKAWDTDFVKVDQATLFDLIL 101
           K+HVEA++  +              A+   D+DLK WD++F+KVDQ TLFDLIL
Sbjct: 61  KRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLIL 114

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1. SCF(UFO) is required for vegetative and floral organ development as well as for male gametogenesis. SCF(TIR1) is involved in auxin signaling pathway. SCF(COI1) regulates responses to jasmonates. SCF(EID1) and SCF(AFR) are implicated in phytochrome A light signaling. SCF(ADO1), SCF(ADO2), SCF(ADO3) are related to the circadian clock. SCF(ORE9) seems to be involved in senescence. SCF(EBF1/EBF2) may regulate ethylene signaling. Plays a role during embryogenesis and early postembryonic development, especially during cell elongation and division. Contributes to the correct chromosome segregation during tetrad formation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LNT9|ASK4_ARATH SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK4 PE=1 SV=1

 Score =  147 bits (371), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 73/103 (70%), Positives = 84/103 (81%), Gaps = 4/103 (3%)

Query: 3   TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKK 62
           T K I LKSSDGE+FE++EAVA++SQTIKHMIEDDCADNGIPLPNVT  IL+KVIEYCKK
Sbjct: 4   TKKMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKK 63

Query: 63  HVEASKS----DDRATSGVDDDLKAWDTDFVKVDQATLFDLIL 101
           HVEA+       D   S  +D+LK WD++FVKVDQ TLFDLIL
Sbjct: 64  HVEAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLIL 106

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SL93|ASK3_ARATH SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK3 PE=1 SV=1

 Score =  141 bits (356), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/102 (69%), Positives = 79/102 (77%), Gaps = 4/102 (3%)

Query: 3   TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKK 62
           T K I LKSSDGE+FEV+EAVA+ESQTIKHMIEDDC DNGIPLPNVT  IL+KVIEYCKK
Sbjct: 4   TKKMIILKSSDGESFEVEEAVAVESQTIKHMIEDDCVDNGIPLPNVTGAILAKVIEYCKK 63

Query: 63  HVEASKS----DDRATSGVDDDLKAWDTDFVKVDQATLFDLI 100
           HVEA+       D   S  + +LK WD DFVKVD  TLFDL+
Sbjct: 64  HVEAAAEAGGDKDFYGSTENHELKTWDNDFVKVDHPTLFDLL 105

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1.

Arabidopsis thaliana (taxid: 3702)

>sp|O49484|ASK11_ARATH SKP1-like protein 11 OS=Arabidopsis thaliana GN=ASK11 PE=1 SV=1

 Score =  115 bits (289), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 57/99 (57%), Positives = 73/99 (73%), Gaps = 5/99 (5%)

Query: 3   TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKK 62
           +SK I L SSDG++FEV+EAVA++SQTI HM+EDDC  +GIPL NV SKIL KVIEYCKK
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 63  HVEASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLIL 101
           H       D A    ++DL  WD  F+ ++Q+T+F+LIL
Sbjct: 62  H-----HVDEANPISEEDLNNWDEKFMDLEQSTIFELIL 95

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1 (By similarity). Plays a role during early flowers reproductive development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSX8|ASK10_ARATH SKP1-like protein 10 OS=Arabidopsis thaliana GN=ASK10 PE=1 SV=1

 Score =  115 bits (288), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 60/101 (59%), Positives = 70/101 (69%), Gaps = 6/101 (5%)

Query: 1   MSTSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYC 60
           MST KKI LKSSDG +FEV+E  A + QTI HM EDDC DNGIPLP VT KIL  VIEYC
Sbjct: 1   MST-KKIILKSSDGHSFEVEEEAACQCQTIAHMSEDDCTDNGIPLPEVTGKILEMVIEYC 59

Query: 61  KKHVEASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLIL 101
            KH       D A    D+DLK WD +F++  Q+T+FDLI+
Sbjct: 60  NKH-----HVDAANPCSDEDLKKWDKEFMEKYQSTIFDLIM 95

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1.

Arabidopsis thaliana (taxid: 3702)

>sp|O65674|ASK12_ARATH SKP1-like protein 12 OS=Arabidopsis thaliana GN=ASK12 PE=1 SV=1

 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 58/100 (58%), Positives = 74/100 (74%), Gaps = 7/100 (7%)

Query: 3   TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKK 62
           +SK I L SSDG++FEV+EAVA++SQTI HM+EDDC  +GIPL NV SKIL KVIEYCKK
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 63  -HVEASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLIL 101
            HV      D A    ++DL  WD  F+ ++Q+T+F+LIL
Sbjct: 62  YHV------DEANPISEEDLNKWDEKFMDLEQSTIFELIL 95

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1 (By similarity). Plays a role during early flowers reproductive development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1X5|ASK13_ARATH SKP1-like protein 13 OS=Arabidopsis thaliana GN=ASK13 PE=1 SV=1

 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 58/100 (58%), Positives = 73/100 (73%), Gaps = 6/100 (6%)

Query: 4   SKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKH 63
           SK + L SSDGE+F+V+EAVA++SQTI HMIEDDC  NG+P+ NVT  ILSKVIEYCKKH
Sbjct: 2   SKMVMLLSSDGESFQVEEAVAVQSQTIAHMIEDDCVANGVPIANVTGVILSKVIEYCKKH 61

Query: 64  VEASKSDDRATSGVDDDLKAWDTDFVKV--DQATLFDLIL 101
           V +    D  T    D+LK WD +F+K     +TLFD++L
Sbjct: 62  VVS----DSPTEESKDELKKWDAEFMKALEQSSTLFDVML 97

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSX9|ASK9_ARATH SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK9 PE=1 SV=1

 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 60/101 (59%), Positives = 70/101 (69%), Gaps = 7/101 (6%)

Query: 1   MSTSKKITLKSSDGEAFEVDEAVALESQTI-KHMIEDDCADNGIPLPNVTSKILSKVIEY 59
           MST KKI LKSSDG +FEV+E  A + Q I  HM E+DC DNGIPLPNVT KIL+ VIEY
Sbjct: 1   MST-KKIILKSSDGHSFEVEEEAARQCQIIIAHMSENDCTDNGIPLPNVTGKILAMVIEY 59

Query: 60  CKKHVEASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLI 100
           C KH       D A    DDDLK WD +F++ D +T+FDLI
Sbjct: 60  CNKH-----HVDAANPCSDDDLKKWDKEFMEKDTSTIFDLI 95

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSY0|ASK7_ARATH SKP1-like protein 7 OS=Arabidopsis thaliana GN=ASK7 PE=2 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 52/98 (53%), Positives = 67/98 (68%), Gaps = 5/98 (5%)

Query: 3   TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKK 62
           ++KKI LKSSDG+ FE++E  A + QTI HMIE +C DN IP+ NVTS+IL  VIEYC K
Sbjct: 2   STKKIMLKSSDGKMFEIEEETARQCQTIAHMIEAECTDNVIPVSNVTSEILEMVIEYCNK 61

Query: 63  HVEASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLI 100
           H       D A    D+DLK WD +F++ DQ T+F L+
Sbjct: 62  H-----HVDAANPCSDEDLKKWDKEFMEKDQYTIFHLM 94

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
255539022	157	skp1, putative [Ricinus communis] gi|223	0.990	0.636	0.900	3e-44
225457883	156	PREDICTED: SKP1-like protein 1B isoform	0.980	0.634	0.881	1e-43
151564277	157	SKP1 component-like 1 [Humulus lupulus]	0.990	0.636	0.881	5e-43
118489534	158	unknown [Populus trichocarpa x Populus d	1.0	0.639	0.821	9e-43
224065753	157	predicted protein [Populus trichocarpa]	0.990	0.636	0.861	2e-42
317106591	100	JHL20J20.6 [Jatropha curcas]	0.990	1.0	0.861	2e-42
386688464	156	Skp1-like protein 1 [Prunus avium]	0.980	0.634	0.841	2e-42
224134024	158	predicted protein [Populus trichocarpa]	1.0	0.639	0.811	3e-42
224083123	157	predicted protein [Populus trichocarpa]	0.990	0.636	0.831	1e-41
392499473	156	GSK1 [Gossypium hirsutum] gi|399912953|g	0.960	0.621	0.85	2e-41

>gi|255539022|ref|XP_002510576.1| skp1, putative [Ricinus communis] gi|223551277|gb|EEF52763.1| skp1, putative [Ricinus communis]

 Score =  182 bits (461), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 91/101 (90%), Positives = 95/101 (94%), Gaps = 1/101 (0%)

Query: 1   MSTSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYC 60
           MSTS+KITLKSSDGE FEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYC
Sbjct: 1   MSTSRKITLKSSDGETFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYC 60

Query: 61  KKHVEASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLIL 101
           KKHVE SKSDDR +S VDD+LK WD +FVKVDQATLFDLIL
Sbjct: 61  KKHVETSKSDDRPSS-VDDELKTWDAEFVKVDQATLFDLIL 100

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457883|ref|XP_002270061.1| PREDICTED: SKP1-like protein 1B isoform 2 [Vitis vinifera] gi|147788379|emb|CAN76662.1| hypothetical protein VITISV_040452 [Vitis vinifera]

 Score =  180 bits (456), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 89/101 (88%), Positives = 96/101 (95%), Gaps = 2/101 (1%)

Query: 1   MSTSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYC 60
           MS+S+KITLKSSDGEAF+VDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYC
Sbjct: 1   MSSSRKITLKSSDGEAFDVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYC 60

Query: 61  KKHVEASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLIL 101
           KKHVEA K ++R  SGVD++LKAWD DFVKVDQATLFDLIL
Sbjct: 61  KKHVEAPKPEER--SGVDEELKAWDADFVKVDQATLFDLIL 99

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|151564277|gb|ABS17589.1| SKP1 component-like 1 [Humulus lupulus]

 Score =  178 bits (451), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 89/101 (88%), Positives = 94/101 (93%), Gaps = 1/101 (0%)

Query: 1   MSTSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYC 60
           MST +KITLKSSDGE  EVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYC
Sbjct: 1   MSTGRKITLKSSDGETLEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYC 60

Query: 61  KKHVEASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLIL 101
           KKHV A K++DRA+S VDD+LKAWD DFVKVDQATLFDLIL
Sbjct: 61  KKHVGAPKAEDRASS-VDDELKAWDADFVKVDQATLFDLIL 100

Source: Humulus lupulus

Species: Humulus lupulus

Genus: Humulus

Family: Cannabaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489534|gb|ABK96569.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  177 bits (448), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 83/101 (82%), Positives = 94/101 (93%)

Query: 1   MSTSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYC 60
           MS+ +KI+L+SSDGE+FEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKIL+KVIEYC
Sbjct: 1   MSSGRKISLRSSDGESFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILAKVIEYC 60

Query: 61  KKHVEASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLIL 101
           KKHVE  KS+DR T+  DD+LK WDT+FV+VDQATLFDLIL
Sbjct: 61  KKHVETPKSEDRGTNSGDDELKNWDTEFVRVDQATLFDLIL 101

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065753|ref|XP_002301954.1| predicted protein [Populus trichocarpa] gi|118485200|gb|ABK94461.1| unknown [Populus trichocarpa] gi|222843680|gb|EEE81227.1| predicted protein [Populus trichocarpa]

 Score =  176 bits (446), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 87/101 (86%), Positives = 93/101 (92%), Gaps = 1/101 (0%)

Query: 1   MSTSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYC 60
           MS+S+K TLKSSDGEAFEVDEAVALESQTIKHMIE+DCADN IPLPNVTSKILSKVIEYC
Sbjct: 1   MSSSRKFTLKSSDGEAFEVDEAVALESQTIKHMIEEDCADNAIPLPNVTSKILSKVIEYC 60

Query: 61  KKHVEASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLIL 101
           KKHVE  KSDDR +S  DDDLK+WD +FVKVDQATLFDLIL
Sbjct: 61  KKHVETPKSDDRPSSA-DDDLKSWDAEFVKVDQATLFDLIL 100

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106591|dbj|BAJ53099.1| JHL20J20.6 [Jatropha curcas]

 Score =  176 bits (445), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 87/101 (86%), Positives = 92/101 (91%), Gaps = 1/101 (0%)

Query: 1   MSTSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYC 60
           MST +KITLKS+DGE FEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYC
Sbjct: 1   MSTGRKITLKSADGETFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYC 60

Query: 61  KKHVEASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLIL 101
           KKHVE  KSDDR +S  D++LK WD DFVKVDQATLFDLIL
Sbjct: 61  KKHVETPKSDDRPSSA-DEELKTWDADFVKVDQATLFDLIL 100

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|386688464|gb|AFJ21662.1| Skp1-like protein 1 [Prunus avium]

 Score =  175 bits (444), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 85/101 (84%), Positives = 95/101 (94%), Gaps = 2/101 (1%)

Query: 1   MSTSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYC 60
           MS+ +KITLKSSDGE FEVDEAVALESQTIKHM+EDDCADNGIPLPNVTSKIL+KVIEYC
Sbjct: 1   MSSERKITLKSSDGETFEVDEAVALESQTIKHMVEDDCADNGIPLPNVTSKILAKVIEYC 60

Query: 61  KKHVEASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLIL 101
           KKHV+A+K DDR ++  D+DLKAWDTDFVK+DQATLFDLIL
Sbjct: 61  KKHVDAAKPDDRPSN--DEDLKAWDTDFVKIDQATLFDLIL 99

Source: Prunus avium

Species: Prunus avium

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134024|ref|XP_002327737.1| predicted protein [Populus trichocarpa] gi|118481562|gb|ABK92723.1| unknown [Populus trichocarpa] gi|222836822|gb|EEE75215.1| predicted protein [Populus trichocarpa]

 Score =  175 bits (444), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 82/101 (81%), Positives = 93/101 (92%)

Query: 1   MSTSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYC 60
           MS+ +KI+L+SSDGE+FEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKIL+KVIEYC
Sbjct: 1   MSSGRKISLRSSDGESFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILAKVIEYC 60

Query: 61  KKHVEASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLIL 101
           KKHVE  K +DR T+  DD+LK WDT+FV+VDQATLFDLIL
Sbjct: 61  KKHVETPKPEDRGTNSGDDELKNWDTEFVRVDQATLFDLIL 101

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083123|ref|XP_002306950.1| predicted protein [Populus trichocarpa] gi|118487452|gb|ABK95554.1| unknown [Populus trichocarpa] gi|222856399|gb|EEE93946.1| predicted protein [Populus trichocarpa]

 Score =  173 bits (438), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 84/101 (83%), Positives = 92/101 (91%), Gaps = 1/101 (0%)

Query: 1   MSTSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYC 60
           MST +K  LKSSDGE+FEVDEAVA+ESQTIKHMIEDDCADNGIPLPNVTSK+L+KVIEYC
Sbjct: 1   MSTGRKFILKSSDGESFEVDEAVAVESQTIKHMIEDDCADNGIPLPNVTSKVLAKVIEYC 60

Query: 61  KKHVEASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLIL 101
           KKHVE+ KSDDR +S   DDLKAWD +FVKVDQATLFDLIL
Sbjct: 61  KKHVESPKSDDRPSSAA-DDLKAWDAEFVKVDQATLFDLIL 100

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|392499473|gb|AFM75900.1| GSK1 [Gossypium hirsutum] gi|399912953|gb|AFP55363.1| SKP1-like protein [Gossypium hirsutum]

 Score =  172 bits (437), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 85/100 (85%), Positives = 93/100 (93%), Gaps = 3/100 (3%)

Query: 2   STSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCK 61
           S+ +KITLKSSDGE+FEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKIL+KVIEYCK
Sbjct: 3   SSGRKITLKSSDGESFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILAKVIEYCK 62

Query: 62  KHVEASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLIL 101
           KHVEA K+DDR+    DD+LK+WD DFVKVDQATLFDLIL
Sbjct: 63  KHVEAPKTDDRS---ADDELKSWDADFVKVDQATLFDLIL 99

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
TAIR|locus:2204435	160	SKP1 "AT1G75950" [Arabidopsis	0.980	0.618	0.745	4.9e-37
TAIR|locus:2165825	171	ASK2 "AT5G42190" [Arabidopsis	1.0	0.590	0.728	3.5e-36
TAIR|locus:2198621	163	SK4 "AT1G20140" [Arabidopsis t	0.980	0.607	0.718	2.5e-33
TAIR|locus:2050281	163	SK3 "AT2G25700" [Arabidopsis t	0.970	0.601	0.696	6e-32
TAIR|locus:2080532	154	SK13 "AT3G60010" [Arabidopsis	0.930	0.610	0.59	2.9e-25
TAIR|locus:2093094	152	SK10 "AT3G21860" [Arabidopsis	0.940	0.625	0.594	3.6e-25
TAIR|locus:2124281	152	SK11 "AT4G34210" [Arabidopsis	0.930	0.618	0.575	9.7e-25
TAIR|locus:2139504	152	SK12 "AT4G34470" [Arabidopsis	0.920	0.611	0.58	1.6e-24
TAIR|locus:2093084	153	SK9 "AT3G21850" [Arabidopsis t	0.930	0.614	0.594	3.3e-24
TAIR|locus:2093074	125	SK7 "AT3G21840" [Arabidopsis t	0.930	0.752	0.55	4.3e-22

TAIR|locus:2204435 SKP1 "AT1G75950" [Arabidopsis thaliana (taxid:3702)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 76/102 (74%), Positives = 88/102 (86%)

Query:     3 TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKK 62
             ++KKI LKSSDGE+FEV+EAVALESQTI HM+EDDC DNG+PLPNVTSKIL+KVIEYCK+
Sbjct:     2 SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query:    63 HVEASKSDDRATSGV---DDDLKAWDTDFVKVDQATLFDLIL 101
             HVEA+ S   A  G    DDDLKAWD DF+K+DQATLF+LIL
Sbjct:    62 HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELIL 103

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA;NAS

GO:0005737 "cytoplasm" evidence=NAS

GO:0019005 "SCF ubiquitin ligase complex" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0007140 "male meiosis" evidence=IMP

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA;TAS

GO:0000151 "ubiquitin ligase complex" evidence=TAS

GO:0005819 "spindle" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0045910 "negative regulation of DNA recombination" evidence=IMP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=IMP

GO:0007067 "mitosis" evidence=RCA;TAS

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0042752 "regulation of circadian rhythm" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

TAIR|locus:2165825 ASK2 "AT5G42190" [Arabidopsis thaliana (taxid:3702)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 83/114 (72%), Positives = 92/114 (80%)

Query:     1 MSTSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYC 60
             MST +KITLKSSDGE FE+DEAVALESQTIKHMIEDDC DNGIPLPNVTSKILSKVIEYC
Sbjct:     1 MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYC 60

Query:    61 KKHVEAS-KSDDRA-----------TSGV-DDDLKAWDTDFVKVDQATLFDLIL 101
             K+HVEA+ KS+  A            SG  D+DLK WD++F+KVDQ TLFDLIL
Sbjct:    61 KRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLIL 114

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=NAS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;RCA;TAS

GO:0019005 "SCF ubiquitin ligase complex" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0009793 "embryo development ending in seed dormancy" evidence=IGI

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0042752 "regulation of circadian rhythm" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

TAIR|locus:2198621 SK4 "AT1G20140" [Arabidopsis thaliana (taxid:3702)]

 Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 74/103 (71%), Positives = 85/103 (82%)

Query:     3 TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKK 62
             T K I LKSSDGE+FE++EAVA++SQTIKHMIEDDCADNGIPLPNVT  IL+KVIEYCKK
Sbjct:     4 TKKMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKK 63

Query:    63 HVEASKS---D-DRATSGVDDDLKAWDTDFVKVDQATLFDLIL 101
             HVEA+     D D   S  +D+LK WD++FVKVDQ TLFDLIL
Sbjct:    64 HVEAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLIL 106

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;TAS

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2050281 SK3 "AT2G25700" [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 71/102 (69%), Positives = 80/102 (78%)

Query:     3 TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKK 62
             T K I LKSSDGE+FEV+EAVA+ESQTIKHMIEDDC DNGIPLPNVT  IL+KVIEYCKK
Sbjct:     4 TKKMIILKSSDGESFEVEEAVAVESQTIKHMIEDDCVDNGIPLPNVTGAILAKVIEYCKK 63

Query:    63 HVEASKS--DDRATSGVDD--DLKAWDTDFVKVDQATLFDLI 100
             HVEA+     D+   G  +  +LK WD DFVKVD  TLFDL+
Sbjct:    64 HVEAAAEAGGDKDFYGSTENHELKTWDNDFVKVDHPTLFDLL 105

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2080532 SK13 "AT3G60010" [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 59/100 (59%), Positives = 76/100 (76%)

Query:     4 SKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKH 63
             SK + L SSDGE+F+V+EAVA++SQTI HMIEDDC  NG+P+ NVT  ILSKVIEYCKKH
Sbjct:     2 SKMVMLLSSDGESFQVEEAVAVQSQTIAHMIEDDCVANGVPIANVTGVILSKVIEYCKKH 61

Query:    64 VEASKSDDRATSGVDDDLKAWDTDFVK-VDQA-TLFDLIL 101
             V +    D  T    D+LK WD +F+K ++Q+ TLFD++L
Sbjct:    62 VVS----DSPTEESKDELKKWDAEFMKALEQSSTLFDVML 97

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

TAIR|locus:2093094 SK10 "AT3G21860" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 60/101 (59%), Positives = 70/101 (69%)

Query:     1 MSTSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYC 60
             MST KKI LKSSDG +FEV+E  A + QTI HM EDDC DNGIPLP VT KIL  VIEYC
Sbjct:     1 MST-KKIILKSSDGHSFEVEEEAACQCQTIAHMSEDDCTDNGIPLPEVTGKILEMVIEYC 59

Query:    61 KKHVEASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLIL 101
              KH       D A    D+DLK WD +F++  Q+T+FDLI+
Sbjct:    60 NKH-----HVDAANPCSDEDLKKWDKEFMEKYQSTIFDLIM 95

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;TAS

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

TAIR|locus:2124281 SK11 "AT4G34210" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 57/99 (57%), Positives = 73/99 (73%)

Query:     3 TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKK 62
             +SK I L SSDG++FEV+EAVA++SQTI HM+EDDC  +GIPL NV SKIL KVIEYCKK
Sbjct:     2 SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query:    63 HVEASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLIL 101
             H       D A    ++DL  WD  F+ ++Q+T+F+LIL
Sbjct:    62 H-----HVDEANPISEEDLNNWDEKFMDLEQSTIFELIL 95

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2139504 SK12 "AT4G34470" [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 58/100 (58%), Positives = 74/100 (74%)

Query:     3 TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKK 62
             +SK I L SSDG++FEV+EAVA++SQTI HM+EDDC  +GIPL NV SKIL KVIEYCKK
Sbjct:     2 SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query:    63 -HVEASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLIL 101
              HV      D A    ++DL  WD  F+ ++Q+T+F+LIL
Sbjct:    62 YHV------DEANPISEEDLNKWDEKFMDLEQSTIFELIL 95

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2093084 SK9 "AT3G21850" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 60/101 (59%), Positives = 70/101 (69%)

Query:     1 MSTSKKITLKSSDGEAFEVDEAVALESQTI-KHMIEDDCADNGIPLPNVTSKILSKVIEY 59
             MST KKI LKSSDG +FEV+E  A + Q I  HM E+DC DNGIPLPNVT KIL+ VIEY
Sbjct:     1 MST-KKIILKSSDGHSFEVEEEAARQCQIIIAHMSENDCTDNGIPLPNVTGKILAMVIEY 59

Query:    60 CKKHVEASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLI 100
             C KH       D A    DDDLK WD +F++ D +T+FDLI
Sbjct:    60 CNKH-----HVDAANPCSDDDLKKWDKEFMEKDTSTIFDLI 95

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

TAIR|locus:2093074 SK7 "AT3G21840" [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 55/100 (55%), Positives = 68/100 (68%)

Query:     1 MSTSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYC 60
             MST KKI LKSSDG+ FE++E  A + QTI HMIE +C DN IP+ NVTS+IL  VIEYC
Sbjct:     1 MST-KKIMLKSSDGKMFEIEEETARQCQTIAHMIEAECTDNVIPVSNVTSEILEMVIEYC 59

Query:    61 KKHVEASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLI 100
              KH       D A    D+DLK WD +F++ DQ T+F L+
Sbjct:    60 NKH-----HVDAANPCSDEDLKKWDKEFMEKDQYTIFHLM 94

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;TAS

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q39255	SKP1A_ARATH	No assigned EC number	0.7450	0.9801	0.6187	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00014362001	SubName- Full=Putative uncharacterized protein (Chromosome chr18 scaffold_1, whole genome shotgun sequence); (156 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00016431001	SubName- Full=Putative uncharacterized protein (Chromosome chr11 scaffold_13, whole genome shot [...] (120 aa)					•	•	•		0.837

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	101
smart00512	104	smart00512, Skp1, Found in Skp1 protein family	5e-36
pfam03931	61	pfam03931, Skp1_POZ, Skp1 family, tetramerisation	1e-28
COG5201	158	COG5201, SKP1, SCF ubiquitin ligase, SKP1 componen	2e-16
pfam01466	78	pfam01466, Skp1, Skp1 family, dimerisation domain	2e-05

>gnl|CDD|214704 smart00512, Skp1, Found in Skp1 protein family

 Score =  117 bits (296), Expect = 5e-36
 Identities = 59/102 (57%), Positives = 69/102 (67%), Gaps = 9/102 (8%)

Query: 4   SKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCAD----NGIPLPNVTSKILSKVIEY 59
           SK I L SSDGE FEV+  VA +S+TIK MIED   D    N IPLPNVTSKILSKVIEY
Sbjct: 1   SKYIKLISSDGEVFEVEREVARQSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEY 60

Query: 60  CKKHVEASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLIL 101
           C+ HV+   S         DD+  WD +F+K+DQ TLF+LIL
Sbjct: 61  CEHHVDDPPSVAD-----KDDIPTWDAEFLKIDQETLFELIL 97

Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues. Length = 104

>gnl|CDD|217800 pfam03931, Skp1_POZ, Skp1 family, tetramerisation domain

 Score = 97.7 bits (244), Expect = 1e-28
 Identities = 40/61 (65%), Positives = 46/61 (75%)

Query: 5  KKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHV 64
          K I L SSDGE FEV+  VA +S+TIK MIED   D+ IPLPNVTSKIL+KVIE+CK H 
Sbjct: 1  KLIKLTSSDGEIFEVEREVARQSKTIKAMIEDLGVDDPIPLPNVTSKILAKVIEWCKHHK 60

Query: 65 E 65
           
Sbjct: 61 V 61

Length = 61

>gnl|CDD|227528 COG5201, SKP1, SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]

 Score = 69.6 bits (170), Expect = 2e-16
 Identities = 39/100 (39%), Positives = 53/100 (53%), Gaps = 6/100 (6%)

Query: 6   KITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADN-GIPLPNVTSKILSKVIEYCKKHV 64
            I L+S DGE F VDE +A  S  IK+M+ D  A N  IP PNV S +L KV E+ + H 
Sbjct: 3   MIELESIDGEIFRVDENIAERSILIKNMLCDSTACNYPIPAPNVRSSVLMKVQEWMEHHT 62

Query: 65  EA---SKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLIL 101
            +    ++D         D   WD  F++VDQ  L ++ L
Sbjct: 63  SSLSEDENDLEIRKSKPSD--FWDRFFMEVDQEMLLEICL 100

Length = 158

>gnl|CDD|201810 pfam01466, Skp1, Skp1 family, dimerisation domain

 Score = 38.7 bits (91), Expect = 2e-05
 Identities = 16/21 (76%), Positives = 17/21 (80%)

Query: 81  LKAWDTDFVKVDQATLFDLIL 101
           LK WD +FV VDQ TLFDLIL
Sbjct: 1   LKEWDAEFVDVDQDTLFDLIL 21

Length = 78

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	101
KOG1724	162	consensus SCF ubiquitin ligase, Skp1 component [Po	99.97
smart00512	104	Skp1 Found in Skp1 protein family. Family of Skp1	99.97
PF03931	62	Skp1_POZ: Skp1 family, tetramerisation domain; Int	99.92
COG5201	158	SKP1 SCF ubiquitin ligase, SKP1 component [Posttra	99.89
KOG3473	112	consensus RNA polymerase II transcription elongati	99.66
PF00651	111	BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (	97.41
smart00225	90	BTB Broad-Complex, Tramtrack and Bric a brac. Doma	96.77
PHA02713	557	hypothetical protein; Provisional	94.68
PHA03098	534	kelch-like protein; Provisional	93.04
PHA02790	480	Kelch-like protein; Provisional	83.49
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	81.34

>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=7.7e-31  Score=178.07  Aligned_cols=100  Identities=57%  Similarity=0.865  Sum_probs=83.4

Q ss_pred             CCCCceEEEEcCCCCeEEecHHHHHHhHHHHHHHhhCCC-CC--CcccCCCCHHHHHHHHHHHHhhcccCCCc-cccCCC
Q 035736            1 MSTSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCA-DN--GIPLPNVTSKILSKVIEYCKKHVEASKSD-DRATSG   76 (101)
Q Consensus         1 m~~~~~v~L~S~DG~~f~v~~~~a~~S~~i~~~l~~~~~-~~--~Ipl~~v~~~~L~kIiewc~~h~~~~~~~-~~~~~~   76 (101)
                      |+ ..+|+|+|+||++|+|+.++|++|.+|++++.+.+. .+  +||||+|+|.+|++||+||+||+++++.. +.....
T Consensus         2 ~~-~~~ikL~SsDG~~f~ve~~~a~~s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~   80 (162)
T KOG1724|consen    2 MS-KKKIKLESSDGEIFEVEEEVARQSQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELP   80 (162)
T ss_pred             CC-CCeEEEEccCCceeehhHHHHHHhHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHccccccccccccccc
Confidence            44 579999999999999999999999999998877653 34  89999999999999999999999986522 110012


Q ss_pred             CCCCcChhhhhhhccChhhhhhhhC
Q 035736           77 VDDDLKAWDTDFVKVDQATLFDLIL  101 (101)
Q Consensus        77 ~~~~~~~WD~~Fl~~~~~~Lf~li~  101 (101)
                      ....+++||++||++|++.||+||+
T Consensus        81 ~~~~i~~WD~~Flk~d~~tLfdli~  105 (162)
T KOG1724|consen   81 EETDIPEWDAEFLKVDQGTLFDLIL  105 (162)
T ss_pred             ccCCccHHHHHHHhcCHHHHHHHHH
Confidence            3455999999999999999999984

>smart00512 Skp1 Found in Skp1 protein family

Probab=99.97  E-value=2.3e-30  Score=164.35  Aligned_cols=92  Identities=63%  Similarity=0.937  Sum_probs=81.2

Q ss_pred             ceEEEEcCCCCeEEecHHHHHHhHHHHHHHhhCCCC----CCcccCCCCHHHHHHHHHHHHhhcccCCCccccCCCCCCC
Q 035736            5 KKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCAD----NGIPLPNVTSKILSKVIEYCKKHVEASKSDDRATSGVDDD   80 (101)
Q Consensus         5 ~~v~L~S~DG~~f~v~~~~a~~S~~i~~~l~~~~~~----~~Ipl~~v~~~~L~kIiewc~~h~~~~~~~~~~~~~~~~~   80 (101)
                      .+|+|+|+||++|.|++++|++|++|++|+++.+..    .+||||+|+|.+|++|++||+||+.++.+...     ...
T Consensus         2 ~~v~L~S~Dg~~f~v~~~~a~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h~~~~~~~~~-----~~~   76 (104)
T smart00512        2 KYIKLISSDGEVFEVEREVARQSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHHVDDPPSVAD-----KDD   76 (104)
T ss_pred             CeEEEEeCCCCEEEecHHHHHHHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHcccCCCCccc-----ccc
Confidence            589999999999999999999999999999987642    48999999999999999999999988653221     146


Q ss_pred             cChhhhhhhccChhhhhhhhC
Q 035736           81 LKAWDTDFVKVDQATLFDLIL  101 (101)
Q Consensus        81 ~~~WD~~Fl~~~~~~Lf~li~  101 (101)
                      +++||++|++++++.||+||+
T Consensus        77 ~~~wD~~F~~~d~~~l~dLl~   97 (104)
T smart00512       77 IPTWDAEFLKIDQETLFELIL   97 (104)
T ss_pred             ccHHHHHHHcCCHHHHHHHHH
Confidence            899999999999999999984

Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.

>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []

Probab=99.92  E-value=2.1e-25  Score=130.08  Aligned_cols=60  Identities=52%  Similarity=0.814  Sum_probs=55.2

Q ss_pred             eEEEEcCCCCeEEecHHHHHHhHHHHHHHhhCCCCC-CcccCCCCHHHHHHHHHHHHhhcc
Q 035736            6 KITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADN-GIPLPNVTSKILSKVIEYCKKHVE   65 (101)
Q Consensus         6 ~v~L~S~DG~~f~v~~~~a~~S~~i~~~l~~~~~~~-~Ipl~~v~~~~L~kIiewc~~h~~   65 (101)
                      +|+|+|+||++|.|++++|++|++|++|+++.+..+ +||||+|+|++|+||++||+||++
T Consensus         2 ~v~L~SsDg~~f~V~~~~a~~S~~i~~ml~~~~~~~~~Ipl~~v~~~~L~kViewc~~H~~   62 (62)
T PF03931_consen    2 YVKLVSSDGQEFEVSREAAKQSKTIKNMLEDLGDEDEPIPLPNVSSRILKKVIEWCEHHKN   62 (62)
T ss_dssp             EEEEEETTSEEEEEEHHHHTTSHHHHHHHHCTCCCGTEEEETTS-HHHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCEEEeeHHHHHHhHHHHHHHhhhcccccccccCccCHHHHHHHHHHHHhcCC
Confidence            699999999999999999999999999999887654 599999999999999999999974

It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....

>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=2.8e-23  Score=135.80  Aligned_cols=96  Identities=39%  Similarity=0.561  Sum_probs=83.3

Q ss_pred             eEEEEcCCCCeEEecHHHHHHhHHHHHHHhhCCC-CCCcccCCCCHHHHHHHHHHHHhhcccCCCcccc-CCCCCCCcCh
Q 035736            6 KITLKSSDGEAFEVDEAVALESQTIKHMIEDDCA-DNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRA-TSGVDDDLKA   83 (101)
Q Consensus         6 ~v~L~S~DG~~f~v~~~~a~~S~~i~~~l~~~~~-~~~Ipl~~v~~~~L~kIiewc~~h~~~~~~~~~~-~~~~~~~~~~   83 (101)
                      ++.|.|.||++|.|+..+|..|-+|++|+.+.+. .-+||+|||.|.+|.+|++||+||++...+.+.+ ..++......
T Consensus         3 ~i~l~s~dge~F~vd~~iAerSiLikN~l~d~~~~n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~D~   82 (158)
T COG5201           3 MIELESIDGEIFRVDENIAERSILIKNMLCDSTACNYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSDF   82 (158)
T ss_pred             ceEEEecCCcEEEehHHHHHHHHHHHHHhccccccCCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCccH
Confidence            6999999999999999999999999999988765 3478999999999999999999999865544443 2334677889


Q ss_pred             hhhhhhccChhhhhhhhC
Q 035736           84 WDTDFVKVDQATLFDLIL  101 (101)
Q Consensus        84 WD~~Fl~~~~~~Lf~li~  101 (101)
                      ||+.|+.+|+++||++++
T Consensus        83 wdr~Fm~vDqemL~eI~l  100 (158)
T COG5201          83 WDRFFMEVDQEMLLEICL  100 (158)
T ss_pred             HHHHHHHhhHHHHHHHHH
Confidence            999999999999999864

>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]

Probab=99.66  E-value=2.1e-16  Score=98.80  Aligned_cols=65  Identities=31%  Similarity=0.401  Sum_probs=59.2

Q ss_pred             CceEEEEcCCCCeEEecHHHHHHhHHHHHHHhhCCC-----CCCcccCCCCHHHHHHHHHHHHhhcccCC
Q 035736            4 SKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCA-----DNGIPLPNVTSKILSKVIEYCKKHVEASK   68 (101)
Q Consensus         4 ~~~v~L~S~DG~~f~v~~~~a~~S~~i~~~l~~~~~-----~~~Ipl~~v~~~~L~kIiewc~~h~~~~~   68 (101)
                      +.+|+|+|+||++|.+.+++|..|+|||.||.+.+.     .+.+.++++.+.+|+||++|+.|...+..
T Consensus        16 ~~yVkLvS~Ddhefiikre~AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~   85 (112)
T KOG3473|consen   16 SMYVKLVSSDDHEFIIKREHAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTN   85 (112)
T ss_pred             hhheEeecCCCcEEEEeehhhhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeecc
Confidence            579999999999999999999999999999997653     46899999999999999999999987753

>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins

Probab=97.41  E-value=0.0014  Score=40.50  Aligned_cols=59  Identities=22%  Similarity=0.457  Sum_probs=47.6

Q ss_pred             ceEEEEcCCCCeEEecHHHH-HHhHHHHHHHhhCC-CC---CCcccCCCCHHHHHHHHHHHHhh
Q 035736            5 KKITLKSSDGEAFEVDEAVA-LESQTIKHMIEDDC-AD---NGIPLPNVTSKILSKVIEYCKKH   63 (101)
Q Consensus         5 ~~v~L~S~DG~~f~v~~~~a-~~S~~i~~~l~~~~-~~---~~Ipl~~v~~~~L~kIiewc~~h   63 (101)
                      ..++++..||..|.+.+.+. .+|..+++++...+ .+   ..|++++++...++.+++||+..
T Consensus        11 ~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~   74 (111)
T PF00651_consen   11 SDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTG   74 (111)
T ss_dssp             --EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCC
Confidence            45888899999999999995 57999999999873 22   25888999999999999999543

The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....

>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac

Probab=96.77  E-value=0.0028  Score=36.76  Aligned_cols=54  Identities=20%  Similarity=0.296  Sum_probs=44.9

Q ss_pred             cCCCCeEEecHHHHHH-hHHHHHHHhhCC---CCCCcccCCCCHHHHHHHHHHHHhhc
Q 035736           11 SSDGEAFEVDEAVALE-SQTIKHMIEDDC---ADNGIPLPNVTSKILSKVIEYCKKHV   64 (101)
Q Consensus        11 S~DG~~f~v~~~~a~~-S~~i~~~l~~~~---~~~~Ipl~~v~~~~L~kIiewc~~h~   64 (101)
                      ..+|+.|.+.+.++.. |..+++|+....   ....+++++++...++.+++|+..-.
T Consensus         5 ~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~   62 (90)
T smart00225        5 VVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGK   62 (90)
T ss_pred             EECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCce
Confidence            4577999999998764 799999998654   24678899999999999999998653

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.

>PHA02713 hypothetical protein; Provisional

Probab=94.68  E-value=0.083  Score=42.16  Aligned_cols=59  Identities=10%  Similarity=0.253  Sum_probs=49.0

Q ss_pred             eEEEEcCCCCeEEecHHHHH-HhHHHHHHHhhCC----CCCCcccCCCCHHHHHHHHHHHHhhc
Q 035736            6 KITLKSSDGEAFEVDEAVAL-ESQTIKHMIEDDC----ADNGIPLPNVTSKILSKVIEYCKKHV   64 (101)
Q Consensus         6 ~v~L~S~DG~~f~v~~~~a~-~S~~i~~~l~~~~----~~~~Ipl~~v~~~~L~kIiewc~~h~   64 (101)
                      -|+|...+|+.|.+.+.+.. .|..++.|+...-    ....|.|.++++.+|+.|++|++...
T Consensus        27 DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~~   90 (557)
T PHA02713         27 DVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNRH   90 (557)
T ss_pred             CEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcCCC
Confidence            47888777999999999955 7999999997532    13568999999999999999998863

>PHA03098 kelch-like protein; Provisional

Probab=93.04  E-value=0.39  Score=37.61  Aligned_cols=57  Identities=19%  Similarity=0.280  Sum_probs=46.5

Q ss_pred             EEEE-cCCCCeEEecHHHHH-HhHHHHHHHhhCCCCCCcccCCCCHHHHHHHHHHHHhhc
Q 035736            7 ITLK-SSDGEAFEVDEAVAL-ESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHV   64 (101)
Q Consensus         7 v~L~-S~DG~~f~v~~~~a~-~S~~i~~~l~~~~~~~~Ipl~~v~~~~L~kIiewc~~h~   64 (101)
                      ++|. +.+|++|.+.+.++. .|..++.|+...-....|.|+. +..+++.|++|++.-+
T Consensus        12 v~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~~~~i~l~~-~~~~~~~~l~y~Ytg~   70 (534)
T PHA03098         12 ESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFKENEINLNI-DYDSFNEVIKYIYTGK   70 (534)
T ss_pred             EEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCCCceEEecC-CHHHHHHHHHHhcCCc
Confidence            4444 478999999999955 6999999998654356789988 9999999999987764

>PHA02790 Kelch-like protein; Provisional

Probab=83.49  E-value=1.8  Score=33.83  Aligned_cols=56  Identities=11%  Similarity=0.180  Sum_probs=41.2

Q ss_pred             EEEcCCCCeEEecHHH-HHHhHHHHHHHhhCCC--CCCccc--CCCCHHHHHHHHHHHHhh
Q 035736            8 TLKSSDGEAFEVDEAV-ALESQTIKHMIEDDCA--DNGIPL--PNVTSKILSKVIEYCKKH   63 (101)
Q Consensus         8 ~L~S~DG~~f~v~~~~-a~~S~~i~~~l~~~~~--~~~Ipl--~~v~~~~L~kIiewc~~h   63 (101)
                      .+.-.-|.+|.+.+.+ |..|.-+|.|+...-.  ...|.+  .+|+..+|+.||+|++--
T Consensus        24 ~~~~~~~~~~~~HR~VLAa~S~YFraMF~~~~~Es~~~v~~~~~~v~~~~l~~lldy~YTg   84 (480)
T PHA02790         24 TIIEAIGGNIIVNSTILKKLSPYFRTHLRQKYTKNKDPVTRVCLDLDIHSLTSIVIYSYTG   84 (480)
T ss_pred             eEEEEcCcEEeeehhhhhhcCHHHHHHhcCCccccccceEEEecCcCHHHHHHHHHhheee
Confidence            3444568899999999 6679999999965321  223443  389999999999997443

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=81.34  E-value=3.5  Score=33.26  Aligned_cols=59  Identities=20%  Similarity=0.257  Sum_probs=46.3

Q ss_pred             EEEEcCCCCeEEecHHH-HHHhHHHHHHHhhCC---CCCCcccCCCCHHHHHHHHHHHHhhccc
Q 035736            7 ITLKSSDGEAFEVDEAV-ALESQTIKHMIEDDC---ADNGIPLPNVTSKILSKVIEYCKKHVEA   66 (101)
Q Consensus         7 v~L~S~DG~~f~v~~~~-a~~S~~i~~~l~~~~---~~~~Ipl~~v~~~~L~kIiewc~~h~~~   66 (101)
                      |.|.- +|+.|...+.+ |..|..++.|+...-   ....|.|..|++.+|+.+++|+...+-.
T Consensus        39 v~L~v-~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~i~  101 (571)
T KOG4441|consen   39 VTLLV-GDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTGKLE  101 (571)
T ss_pred             EEEEE-CCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcceEE
Confidence            44444 44999999998 557999999997532   2468999999999999999998877653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	101
2p1m_A	160	Tir1-ask1 Complex Structure Length = 160		2e-40
3l2o_A	149	Structure-Based Mechanism Of Dimerization-Dependent		8e-20
1fqv_B	149	Insights Into Scf Ubiquitin Ligases From The Struct		9e-20
1p22_B	145	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		4e-18
1fs1_B	141	Insights Into Scf Ubiquitin Ligases From The Struct		1e-17
1ldk_D	133	Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiqu		1e-17
2e31_B	166	Structural Basis For Selection Of Glycosylated Subs		2e-17
2ast_A	159	Crystal Structure Of The Skp1-Skp2-Cks1 Complex Len		2e-17
3mks_A	169	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		9e-11
1nex_A	169	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		9e-10

>pdb|2P1M|A Chain A, Tir1-ask1 Complex Structure Length = 160

Iteration: 1
 Score =  160 bits (404), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 76/102 (74%), Positives = 88/102 (86%), Gaps = 3/102 (2%)
Query: 3   TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKK 62
           ++KKI LKSSDGE+FEV+EAVALESQTI HM+EDDC DNG+PLPNVTSKIL+KVIEYCK+
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61
Query: 63  HVEASKSDDRATSGV---DDDLKAWDTDFVKVDQATLFDLIL 101
           HVEA+ S   A  G    DDDLKAWD DF+K+DQATLF+LIL
Sbjct: 62  HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELIL 103

>pdb|3L2O|A Chain A, Structure-Based Mechanism Of Dimerization-Dependent Ubiquitination By The Scffbx4 Ubiquitin Ligase Length = 149

Iteration: 1
 Score = 91.7 bits (226), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 51/95 (53%), Positives = 63/95 (66%), Gaps = 7/95 (7%)
Query: 7   ITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEA 66
           I L+SSDGE FEVD  +A +S TIK M+ED   D  +PLPNV + IL KVI++C  H   
Sbjct: 4   IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMD-PVPLPNVNAAILKKVIQWCTHH--- 59
Query: 67  SKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLIL 101
              DD   SG  DD+  WD +F+KVDQ TLF+LIL
Sbjct: 60  --KDDPGGSGT-DDIPVWDQEFLKVDQGTLFELIL 91

>pdb|1FQV|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 149

Iteration: 1
 Score = 91.7 bits (226), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 51/95 (53%), Positives = 63/95 (66%), Gaps = 7/95 (7%)
Query: 7   ITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEA 66
           I L+SSDGE FEVD  +A +S TIK M+ED   D  +PLPNV + IL KVI++C  H   
Sbjct: 4   IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMD-PVPLPNVNAAILKKVIQWCTHH--- 59
Query: 67  SKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLIL 101
              DD   SG  DD+  WD +F+KVDQ TLF+LIL
Sbjct: 60  --KDDPGGSGT-DDIPVWDQEFLKVDQGTLFELIL 91

>pdb|1P22|B Chain B, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 145

Iteration: 1
 Score = 86.3 bits (212), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 49/95 (51%), Positives = 61/95 (64%), Gaps = 11/95 (11%)
Query: 7   ITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEA 66
           I L+SSDGE FEVD  +A +S TIK M+ED   D  +PLPNV + IL KVI++C  H   
Sbjct: 4   IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMD-PVPLPNVNAAILKKVIQWCTHH--- 59
Query: 67  SKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLIL 101
              DD       DD+  WD +F+KVDQ TLF+LIL
Sbjct: 60  --KDDPP-----DDIPVWDQEFLKVDQGTLFELIL 87

>pdb|1FS1|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 141

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/97 (48%), Positives = 62/97 (63%), Gaps = 3/97 (3%)
Query: 7   ITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEA 66
           I L+SSDGE FEVD  +A +S TIK M+ED   D  +PLPNV + IL KVI++C  H + 
Sbjct: 4   IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMD-PVPLPNVNAAILKKVIQWCTHHKDD 62
Query: 67  SKSDDRATSG--VDDDLKAWDTDFVKVDQATLFDLIL 101
               +   +     DD+  WD +F+KVDQ TLF+LIL
Sbjct: 63  PPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELIL 99

>pdb|1LDK|D Chain D, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin Ligase Complex Length = 133

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/97 (48%), Positives = 62/97 (63%), Gaps = 3/97 (3%)
Query: 7   ITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEA 66
           I L+SSDGE FEVD  +A +S TIK M+ED   D  +PLPNV + IL KVI++C  H + 
Sbjct: 3   IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMD-PVPLPNVNAAILKKVIQWCTHHKDD 61
Query: 67  SKSDDRATSG--VDDDLKAWDTDFVKVDQATLFDLIL 101
               +   +     DD+  WD +F+KVDQ TLF+LIL
Sbjct: 62  PPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELIL 98

>pdb|2E31|B Chain B, Structural Basis For Selection Of Glycosylated Substrate By Scffbs1 Ubiquitin Ligase Length = 166

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/102 (46%), Positives = 64/102 (62%), Gaps = 7/102 (6%)
Query: 7   ITLKSSDGEAFEVDEAVALESQTIKHMIED-----DCADNGIPLPNVTSKILSKVIEYCK 61
           I L+SSDGE FEVD  +A +S TIK M+ED     +  D+ +PLPNV + IL KVI++C 
Sbjct: 7   IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 66
Query: 62  KHVEASKSDDRATSG--VDDDLKAWDTDFVKVDQATLFDLIL 101
            H +     +   +     DD+  WD +F+KVDQ TLF+LIL
Sbjct: 67  HHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELIL 108

>pdb|3MKS|A Chain A, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 169

Iteration: 1
 Score = 61.6 bits (148), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 65/113 (57%), Gaps = 17/113 (15%)
Query: 1   MSTSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNG-------IPLPNVTSKIL 53
           M TS  + L S +GE F VD+ +A  S  +K+ + D   D+        +P+PNV S +L
Sbjct: 4   MVTSN-VVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVL 62
Query: 54  SKVIEYCKKHVEASKSDD-----RATSGVDDDLKAWDTDFVKVDQATLFDLIL 101
            KVIE+ + H +++  D+     R ++ VD    +WD +F+KVDQ  L+++IL
Sbjct: 63  QKVIEWAEHHRDSNFPDEDDDDSRKSAPVD----SWDREFLKVDQEMLYEIIL 111

>pdb|1NEX|A Chain A, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 169

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 62/111 (55%), Gaps = 16/111 (14%)
Query: 3   TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGI-------PLPNVTSKILSK 55
            +  + L S +GE F VD+ +A  S  +K+ + D   D+         P+PNV S +L K
Sbjct: 5   VTSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDXGDDDDEDDDEIVXPVPNVRSSVLQK 64
Query: 56  VIEYCKKHVEASKSDD-----RATSGVDDDLKAWDTDFVKVDQATLFDLIL 101
           VIE+ + H +++  D+     R ++ VD    +WD +F+KVDQ  L+++IL
Sbjct: 65  VIEWAEHHRDSNFPDEDDDDSRKSAPVD----SWDREFLKVDQEXLYEIIL 111

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	101
1hv2_A	99	Elongin C, ELC1; protein-peptide complex, signalin	3e-31
2p1m_A	160	SKP1-like protein 1A; F-BOX, leucine rich repeat,	8e-29
1vcb_B	112	Protein (elongin C); tumor suppressor, cancer, ubi	2e-26
1fs1_B	141	SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le	2e-26
2fnj_C	96	Transcription elongation factor B polypeptide 1; b	4e-25
2ast_A	159	S-phase kinase-associated protein 1A; SCF-substrat	5e-25
3v7d_A	169	Suppressor of kinetochore protein 1; WD 40 domain,	8e-24

>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Length = 99

 Score =  104 bits (262), Expect = 3e-31
 Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 12/101 (11%)

Query: 3   TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDC--ADNGIPLPNVTSKILSKVIEYC 60
           +   +TL S D + +E+  + A+ S T+K MIE     +   I L    S IL K +EY 
Sbjct: 2   SQDFVTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYL 61

Query: 61  KKHVEASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLIL 101
             +++ S   +      DD++  ++     +      +L+L
Sbjct: 62  NYNLKYSGVSED-----DDEIPEFE-----IPTEMSLELLL 92

>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Length = 160

 Score =  100 bits (250), Expect = 8e-29
 Identities = 76/104 (73%), Positives = 88/104 (84%), Gaps = 4/104 (3%)

Query: 1   MSTSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYC 60
           MS +KKI LKSSDGE+FEV+EAVALESQTI HM+EDDC DNG+PLPNVTSKIL+KVIEYC
Sbjct: 1   MS-AKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYC 59

Query: 61  KKHVEASKS---DDRATSGVDDDLKAWDTDFVKVDQATLFDLIL 101
           K+HVEA+ S        +  DDDLKAWD DF+K+DQATLF+LIL
Sbjct: 60  KRHVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELIL 103

>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Length = 112

 Score = 93.3 bits (232), Expect = 2e-26
 Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 18/103 (17%)

Query: 4   SKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDC-----ADNGIPLPNVTSKILSKVIE 58
           +  + L SSDG  F V    AL S TIK M+           N +    + S +LSKV  
Sbjct: 16  AMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCM 75

Query: 59  YCKKHVEASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLIL 101
           Y    V  + S          ++  +      +      +L++
Sbjct: 76  YFTYKVRYTNS--------STEIPEFP-----IAPEIALELLM 105

>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Length = 141

 Score = 94.0 bits (233), Expect = 2e-26
 Identities = 49/98 (50%), Positives = 61/98 (62%), Gaps = 3/98 (3%)

Query: 6   KITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHV- 64
            I L+SSDGE FEVD  +A +S TIK M+ED   D  +PLPNV + IL KVI++C  H  
Sbjct: 3   SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDP-VPLPNVNAAILKKVIQWCTHHKD 61

Query: 65  -EASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLIL 101
                 DD       DD+  WD +F+KVDQ TLF+LIL
Sbjct: 62  DPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELIL 99

>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Length = 96

 Score = 89.4 bits (222), Expect = 4e-25
 Identities = 25/100 (25%), Positives = 36/100 (36%), Gaps = 18/100 (18%)

Query: 7   ITLKSSDGEAFEVDEAVALESQTIKHMIEDDCAD-----NGIPLPNVTSKILSKVIEYCK 61
           + L SSDG  F V    AL S TIK M+           N +    + S +LSKV  Y  
Sbjct: 3   VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 62

Query: 62  KHVEASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLIL 101
             V  + S                 +F  +      +L++
Sbjct: 63  YKVRYTNSST------------EIPEF-PIAPEIALELLM 89

>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Length = 169

 Score = 88.0 bits (217), Expect = 8e-24
 Identities = 34/109 (31%), Positives = 61/109 (55%), Gaps = 9/109 (8%)

Query: 1   MSTSKKITLKSSDGEAFEVDEAVALESQTIKHMI-------EDDCADNGIPLPNVTSKIL 53
           M  +  + L S +GE F VD+ +A  S  +K+ +       ++D  +  +P+PNV S +L
Sbjct: 4   MV-TSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVL 62

Query: 54  SKVIEYCKKHVEASKSDDRATSGV-DDDLKAWDTDFVKVDQATLFDLIL 101
            KVIE+ + H +++  D+          + +WD +F+KVDQ  L+++IL
Sbjct: 63  QKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEMLYEIIL 111

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	101
3v7d_A	169	Suppressor of kinetochore protein 1; WD 40 domain,	99.98
1fs1_B	141	SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le	99.96
1hv2_A	99	Elongin C, ELC1; protein-peptide complex, signalin	99.96
2p1m_A	160	SKP1-like protein 1A; F-BOX, leucine rich repeat,	99.96
1vcb_B	112	Protein (elongin C); tumor suppressor, cancer, ubi	99.95
2fnj_C	96	Transcription elongation factor B polypeptide 1; b	99.95
2ast_A	159	S-phase kinase-associated protein 1A; SCF-substrat	99.94
4ajy_C	97	Transcription elongation factor B polypeptide 1; E	99.93
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	97.39
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	97.31
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	97.28
2vpk_A	116	Myoneurin; transcription regulation, transcription	97.16
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	97.15
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	97.14
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	97.09
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	97.08
3fkc_A	116	Transcriptional regulator kaiso; zinc finger and B	97.06
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	97.05
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	96.99
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	96.96
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	96.91
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	96.83
2ihc_A	124	Transcription regulator protein BACH1; BRIC-A-BRAC	96.09
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	95.99
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	95.82
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	95.78
3i3n_A	279	Kelch-like protein 11; structural genomics, BTB, K	95.61
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	93.13

>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*

Probab=99.98  E-value=1e-32  Score=187.67  Aligned_cols=100  Identities=36%  Similarity=0.636  Sum_probs=81.3

Q ss_pred             CCCCceEEEEcCCCCeEEecHHHHHHhHHHHHHHhhCCC-----C--CCcccCCCCHHHHHHHHHHHHhhcccCCCcc-c
Q 035736            1 MSTSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCA-----D--NGIPLPNVTSKILSKVIEYCKKHVEASKSDD-R   72 (101)
Q Consensus         1 m~~~~~v~L~S~DG~~f~v~~~~a~~S~~i~~~l~~~~~-----~--~~Ipl~~v~~~~L~kIiewc~~h~~~~~~~~-~   72 (101)
                      || +++|+|+|+||++|.|++++|++|+||++||++.+.     +  .+||||+|+|.+|+|||+||+||++++++.. .
T Consensus         4 m~-~~~i~L~SsDG~~F~V~~~vA~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~~   82 (169)
T 3v7d_A            4 MV-TSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDD   82 (169)
T ss_dssp             ---CCEEEEECTTCCEEEEEHHHHTTSHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTTTCCCCC---
T ss_pred             CC-CCeEEEEeCCCCEEEecHHHHHHhHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcccCCCccccc
Confidence            77 489999999999999999999999999999997654     3  6899999999999999999999999875331 1


Q ss_pred             cCCCCCCCcChhhhhhhccChhhhhhhhC
Q 035736           73 ATSGVDDDLKAWDTDFVKVDQATLFDLIL  101 (101)
Q Consensus        73 ~~~~~~~~~~~WD~~Fl~~~~~~Lf~li~  101 (101)
                      ........+++||++|++++++.||+||+
T Consensus        83 ~~~~~~~~i~~wD~~Fl~vd~~~LfeLi~  111 (169)
T 3v7d_A           83 DDSRKSAPVDSWDREFLKVDQEMLYEIIL  111 (169)
T ss_dssp             -----CCCCCHHHHHHTCSCHHHHHHHHH
T ss_pred             ccccccccccHHHHHHHcCCHHHHHHHHH
Confidence            22235678999999999999999999984

>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D

Probab=99.96  E-value=1.8e-30  Score=171.90  Aligned_cols=95  Identities=49%  Similarity=0.797  Sum_probs=76.3

Q ss_pred             eEEEEcCCCCeEEecHHHHHHhHHHHHHHhhCCCCCCcccCCCCHHHHHHHHHHHHhhcccCCCc-ccc-CCCCCCCcCh
Q 035736            6 KITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSD-DRA-TSGVDDDLKA   83 (101)
Q Consensus         6 ~v~L~S~DG~~f~v~~~~a~~S~~i~~~l~~~~~~~~Ipl~~v~~~~L~kIiewc~~h~~~~~~~-~~~-~~~~~~~~~~   83 (101)
                      .|+|+|+||++|.|++++|++|++|++|+++.+ +++||||+|++.+|+|||+||+||++++++. +.+ .......+++
T Consensus         3 ~v~L~SsDg~~f~v~~~vA~~S~~ik~ml~~~~-~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~~   81 (141)
T 1fs1_B            3 SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLG-MDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPV   81 (141)
T ss_dssp             EEEEECTTSCEEEEEGGGGGTCHHHHHHHHHTC-CSSEECTTCCHHHHHHHHHHHHHHTTCC-----------------H
T ss_pred             eEEEEeCCCCEEEecHHHHHHhHHHHHHHHhcC-CCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhhhhH
Confidence            599999999999999999999999999999876 7799999999999999999999999887532 221 2234678999


Q ss_pred             hhhhhhccChhhhhhhhC
Q 035736           84 WDTDFVKVDQATLFDLIL  101 (101)
Q Consensus        84 WD~~Fl~~~~~~Lf~li~  101 (101)
                      ||++|++++++.||+||+
T Consensus        82 wD~~F~~vd~~~l~eLi~   99 (141)
T 1fs1_B           82 WDQEFLKVDQGTLFELIL   99 (141)
T ss_dssp             HHHHHTCSCHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHH
Confidence            999999999999999973

>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1

Probab=99.96  E-value=4.2e-30  Score=161.40  Aligned_cols=90  Identities=30%  Similarity=0.456  Sum_probs=77.6

Q ss_pred             CCCCceEEEEcCCCCeEEecHHHHHHhHHHHHHHhhCCC--CCCcccCCCCHHHHHHHHHHHHhhcccCCCccccCCCCC
Q 035736            1 MSTSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCA--DNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRATSGVD   78 (101)
Q Consensus         1 m~~~~~v~L~S~DG~~f~v~~~~a~~S~~i~~~l~~~~~--~~~Ipl~~v~~~~L~kIiewc~~h~~~~~~~~~~~~~~~   78 (101)
                      |+ +++|+|+|+||++|.|++++|++|++|++|+++...  +++||||||+|.+|+|||+||+||++++++.     ...
T Consensus         1 m~-~~~v~L~SsDg~~f~V~~~vA~~S~~ik~ml~~~~e~~~~~Iplp~V~~~iL~kVieyc~~h~~~~~~~-----~~~   74 (99)
T 1hv2_A            1 MS-QDFVTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYNLKYSGVS-----EDD   74 (99)
T ss_dssp             CC-CSEEEEEETTTEEEEEEHHHHTTCHHHHHHHHSSTTTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHC-----SSC
T ss_pred             CC-CcEEEEEecCCCEEEECHHHHHHhHHHHHHHhcccccCCCceecCCcCHHHHHHHHHHHHHhcccCCCc-----ccc
Confidence            77 589999999999999999999999999999998432  3689999999999999999999999875422     124


Q ss_pred             CCcChhhhhhhccChhhhhhhhC
Q 035736           79 DDLKAWDTDFVKVDQATLFDLIL  101 (101)
Q Consensus        79 ~~~~~WD~~Fl~~~~~~Lf~li~  101 (101)
                      ..+++|     +++++.||+||+
T Consensus        75 ~~i~~w-----~vd~~~lfeLi~   92 (99)
T 1hv2_A           75 DEIPEF-----EIPTEMSLELLL   92 (99)
T ss_dssp             SSCCCC-----CCCHHHHHHHHH
T ss_pred             ccCCCc-----cCCHHHHHHHHH
Confidence            678889     799999999984

>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*

Probab=99.96  E-value=6.9e-31  Score=177.07  Aligned_cols=100  Identities=77%  Similarity=1.177  Sum_probs=32.0

Q ss_pred             CCCCceEEEEcCCCCeEEecHHHHHHhHHHHHHHhhCCCCCCcccCCCCHHHHHHHHHHHHhhcccCCCcccc---CCCC
Q 035736            1 MSTSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRA---TSGV   77 (101)
Q Consensus         1 m~~~~~v~L~S~DG~~f~v~~~~a~~S~~i~~~l~~~~~~~~Ipl~~v~~~~L~kIiewc~~h~~~~~~~~~~---~~~~   77 (101)
                      |+ +++|+|+|+||++|.|++++|++|++|++|+++.+.+++||||+|++.+|+|||+||+||++++++.+.+   ....
T Consensus         1 ~~-~~~v~L~SsDg~~f~v~~~vA~~S~~ik~ml~~~~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~   79 (160)
T 2p1m_A            1 MS-AKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATS   79 (160)
T ss_dssp             --------CCC---------CHHHHTCTTTC------------CCTTSCHHHHHHHHHC---------------------
T ss_pred             CC-CCEEEEEcCCCCEEEECHHHHHHhHHHHHHHHccCCCCceeCCcCcHHHHHHHHHHHHHcccCCCcccccccccccc
Confidence            55 5789999999999999999999999999999987767799999999999999999999999886533221   1235


Q ss_pred             CCCcChhhhhhhccChhhhhhhhC
Q 035736           78 DDDLKAWDTDFVKVDQATLFDLIL  101 (101)
Q Consensus        78 ~~~~~~WD~~Fl~~~~~~Lf~li~  101 (101)
                      ...+++||++|++++++.||+||+
T Consensus        80 ~~~i~~wD~~Fl~vd~~~l~eLi~  103 (160)
T 2p1m_A           80 DDDLKAWDADFMKIDQATLFELIL  103 (160)
T ss_dssp             ---------------------CHH
T ss_pred             cchhhHHHHHHHcCCHHHHHHHHH
Confidence            678999999999999999999973

>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1

Probab=99.95  E-value=2.6e-28  Score=156.31  Aligned_cols=85  Identities=27%  Similarity=0.410  Sum_probs=73.4

Q ss_pred             CceEEEEcCCCCeEEecHHHHHHhHHHHHHHhhCCC-----CCCcccCCCCHHHHHHHHHHHHhhcccCCCccccCCCCC
Q 035736            4 SKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCA-----DNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRATSGVD   78 (101)
Q Consensus         4 ~~~v~L~S~DG~~f~v~~~~a~~S~~i~~~l~~~~~-----~~~Ipl~~v~~~~L~kIiewc~~h~~~~~~~~~~~~~~~   78 (101)
                      +++|+|+|+||++|.|++++|++|+||++||++.+.     +++||||+|++.+|+|||+||+||++++.        ..
T Consensus        16 ~~~v~L~SsDG~~F~V~~~~A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~~~~~--------~~   87 (112)
T 1vcb_B           16 AMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTN--------SS   87 (112)
T ss_dssp             -CEEEEECTTSCEEEEEHHHHHTSHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHHHHHHHSS--------CS
T ss_pred             CCEEEEEcCCCCEEEECHHHHHHhHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhhhccC--------Cc
Confidence            579999999999999999999999999999997643     25899999999999999999999998753        24


Q ss_pred             CCcChhhhhhhccChhhhhhhhC
Q 035736           79 DDLKAWDTDFVKVDQATLFDLIL  101 (101)
Q Consensus        79 ~~~~~WD~~Fl~~~~~~Lf~li~  101 (101)
                      ..+++|     +++++.||+||+
T Consensus        88 ~~i~~w-----~vd~~~lfeLi~  105 (112)
T 1vcb_B           88 TEIPEF-----PIAPEIALELLM  105 (112)
T ss_dssp             SCCCCC-----CCCHHHHHHHHH
T ss_pred             CCCCCc-----ccCHHHHHHHHH
Confidence            567888     799999999984

>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B

Probab=99.95  E-value=3.6e-28  Score=151.74  Aligned_cols=84  Identities=27%  Similarity=0.411  Sum_probs=72.7

Q ss_pred             ceEEEEcCCCCeEEecHHHHHHhHHHHHHHhhCCC-----CCCcccCCCCHHHHHHHHHHHHhhcccCCCccccCCCCCC
Q 035736            5 KKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCA-----DNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRATSGVDD   79 (101)
Q Consensus         5 ~~v~L~S~DG~~f~v~~~~a~~S~~i~~~l~~~~~-----~~~Ipl~~v~~~~L~kIiewc~~h~~~~~~~~~~~~~~~~   79 (101)
                      .+|+|+|+||++|.|++++|++|++|++|+++.|.     +++||||+|++.+|+|||+||+||++++.        ...
T Consensus         1 ~~v~L~SsDg~~f~V~~~~A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~--------~~~   72 (96)
T 2fnj_C            1 MYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTN--------SST   72 (96)
T ss_dssp             CEEEEECTTSCEEEEEHHHHTTSHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHHHHHHHS--------CCS
T ss_pred             CeEEEEecCCCEEEeCHHHHHHhHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHHccccCC--------Ccc
Confidence            37999999999999999999999999999998543     25899999999999999999999998643        145


Q ss_pred             CcChhhhhhhccChhhhhhhhC
Q 035736           80 DLKAWDTDFVKVDQATLFDLIL  101 (101)
Q Consensus        80 ~~~~WD~~Fl~~~~~~Lf~li~  101 (101)
                      .+++|     +++++.||+||+
T Consensus        73 ~i~~w-----~vd~~~l~eLi~   89 (96)
T 2fnj_C           73 EIPEF-----PIAPEIALELLM   89 (96)
T ss_dssp             CCCCC-----CCCTTTHHHHHH
T ss_pred             cCCCc-----ccCHHHHHHHHH
Confidence            67888     799999999984

>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*

Probab=99.93  E-value=6.6e-26  Score=141.43  Aligned_cols=83  Identities=28%  Similarity=0.421  Sum_probs=72.3

Q ss_pred             eEEEEcCCCCeEEecHHHHHHhHHHHHHHhhCCC-----CCCcccCCCCHHHHHHHHHHHHhhcccCCCccccCCCCCCC
Q 035736            6 KITLKSSDGEAFEVDEAVALESQTIKHMIEDDCA-----DNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRATSGVDDD   80 (101)
Q Consensus         6 ~v~L~S~DG~~f~v~~~~a~~S~~i~~~l~~~~~-----~~~Ipl~~v~~~~L~kIiewc~~h~~~~~~~~~~~~~~~~~   80 (101)
                      +|+|+|+||++|.|++.+|++|++|++|+++.+.     +++||||+|++.+|+|||+||+||++++.        ....
T Consensus         3 ~v~L~SsDg~~F~v~r~vA~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~--------~~~~   74 (97)
T 4ajy_C            3 YVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTN--------SSTE   74 (97)
T ss_dssp             EEEEECTTCCEEEEEHHHHTTSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTT--------CCSC
T ss_pred             EEEEEecCCcEEEecHHHHHHhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCC--------CcCC
Confidence            7999999999999999999999999999997543     56899999999999999999999998753        2457


Q ss_pred             cChhhhhhhccChhhhhhhhC
Q 035736           81 LKAWDTDFVKVDQATLFDLIL  101 (101)
Q Consensus        81 ~~~WD~~Fl~~~~~~Lf~li~  101 (101)
                      +++|     +++++.||+||+
T Consensus        75 i~~~-----~i~~~~l~eLl~   90 (97)
T 4ajy_C           75 IPEF-----PIAPEIALELLM   90 (97)
T ss_dssp             CCCC-----CCCGGGHHHHHH
T ss_pred             CCcC-----cCCHHHHHHHHH
Confidence            8899     589999999973

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}

Probab=97.39  E-value=0.00061  Score=41.33  Aligned_cols=59  Identities=15%  Similarity=0.219  Sum_probs=47.8

Q ss_pred             eEEEEcCCC---CeEEecHHHH-HHhHHHHHHHhhCCC--CCCcccCCCCHHHHHHHHHHHHhhc
Q 035736            6 KITLKSSDG---EAFEVDEAVA-LESQTIKHMIEDDCA--DNGIPLPNVTSKILSKVIEYCKKHV   64 (101)
Q Consensus         6 ~v~L~S~DG---~~f~v~~~~a-~~S~~i~~~l~~~~~--~~~Ipl~~v~~~~L~kIiewc~~h~   64 (101)
                      -++|+..+|   +.|.+.+.+. ..|..+++|+.....  ...|.|+++++.+++.+++|++.-.
T Consensus        10 Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~~~i~l~~~~~~~f~~~l~~iYt~~   74 (109)
T 2vkp_A           10 DVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVKSEIHIPDVEPAAFLILLKYMYSDE   74 (109)
T ss_dssp             CEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------CCEEEETTSCHHHHHHHHHHHHHCC
T ss_pred             cEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCCCeEEeCCCCHHHHHHHHHHHcCCC
Confidence            478888876   9999999995 589999999976421  2679999999999999999998753

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}

Probab=97.31  E-value=0.0011  Score=41.57  Aligned_cols=57  Identities=18%  Similarity=0.431  Sum_probs=48.1

Q ss_pred             eEEEEcCCCCeEEecHHHHH-HhHHHHHHHhhCCCCCCcccC-CCCHHHHHHHHHHHHhhc
Q 035736            6 KITLKSSDGEAFEVDEAVAL-ESQTIKHMIEDDCADNGIPLP-NVTSKILSKVIEYCKKHV   64 (101)
Q Consensus         6 ~v~L~S~DG~~f~v~~~~a~-~S~~i~~~l~~~~~~~~Ipl~-~v~~~~L~kIiewc~~h~   64 (101)
                      -++|+. +|+.|.+.+.+.. +|..++.|+... ....|.|| ++++.+++.+++|++.-.
T Consensus        35 Dv~l~v-~~~~~~~Hk~vLaa~S~~F~~~f~~~-~~~~i~l~~~~~~~~f~~ll~~iYtg~   93 (129)
T 3ga1_A           35 DVSVVV-KGHAFKAHRAVLAASSSYFRDLFNNS-RSAVVELPAAVQPQSFQQILSFCYTGR   93 (129)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHBHHHHHHHHHC-CCSEEECCTTCCHHHHHHHHHHHHHSE
T ss_pred             ceEEEE-CCEEEEehHHHHHHcCHHHHHHHcCC-CCCEEEECCCCCHHHHHHHHHHHhCCc
Confidence            366665 7999999999955 799999999876 46789998 899999999999998654

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}

Probab=97.28  E-value=0.00091  Score=41.54  Aligned_cols=57  Identities=18%  Similarity=0.255  Sum_probs=47.5

Q ss_pred             eEEEEcCCCCeEEecHHHH-HHhHHHHHHHhhCCCCCCcccCCCCHHHHHHHHHHHHhhc
Q 035736            6 KITLKSSDGEAFEVDEAVA-LESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHV   64 (101)
Q Consensus         6 ~v~L~S~DG~~f~v~~~~a-~~S~~i~~~l~~~~~~~~Ipl~~v~~~~L~kIiewc~~h~   64 (101)
                      -++|+. +|+.|.+.+.+. ..|..++.|+.... ...|.|+++++.+++.+++|++.-.
T Consensus        26 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~~-~~~i~l~~~~~~~f~~ll~~iYtg~   83 (119)
T 3b84_A           26 DATLDV-GGLVFKAHWSVLACCSHFFQSLYGDGS-GGSVVLPAGFAEIFGLLLDFFYTGH   83 (119)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHHTTTT-CCCEEECGGGHHHHHHHHHHHHHSC
T ss_pred             ceEEEE-CCEEEEeeHHHHhhcCHHHHHHHCCCC-CCeEEeCCCCHHHHHHHHHHHcCCC
Confidence            356664 689999999984 57999999998654 6789999999999999999998653

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}

Probab=97.16  E-value=0.0023  Score=39.31  Aligned_cols=56  Identities=16%  Similarity=0.182  Sum_probs=45.6

Q ss_pred             eEEEEcCCCCeEEecHHHH-HHhHHHHHHHhhCCCCCCcccC--CCCHHHHHHHHHHHHhh
Q 035736            6 KITLKSSDGEAFEVDEAVA-LESQTIKHMIEDDCADNGIPLP--NVTSKILSKVIEYCKKH   63 (101)
Q Consensus         6 ~v~L~S~DG~~f~v~~~~a-~~S~~i~~~l~~~~~~~~Ipl~--~v~~~~L~kIiewc~~h   63 (101)
                      -|+|+. +|+.|.+.+.+. ..|..++.|+.... ...|.|+  ++++.+++.+++|++.-
T Consensus        24 Dv~l~v-~~~~~~aHk~vLaa~S~yF~~~f~~~~-~~~i~l~~~~~~~~~f~~ll~~~Yt~   82 (116)
T 2vpk_A           24 DCTIVI-GEFQFKAHRNVLASFSEYFGAIYRSTS-ENNVFLDQSQVKADGFQKLLEFIYTG   82 (116)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHHTTCC-CSCEECCTTTCCHHHHHHHHHHHHHS
T ss_pred             cEEEEE-CCEEEeccHHHHhhcCHHHHHHHcCCC-CCeEEeecCCCCHHHHHHHHHHHcCC
Confidence            356655 589999999995 67999999998763 4556665  99999999999999865

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A

Probab=97.15  E-value=0.002  Score=39.78  Aligned_cols=58  Identities=16%  Similarity=0.302  Sum_probs=46.5

Q ss_pred             eEEEEcCCCCeEEecHHHHH-HhHHHHHHHhhCC---CCCCcccCCCCHHHHHHHHHHHHhhc
Q 035736            6 KITLKSSDGEAFEVDEAVAL-ESQTIKHMIEDDC---ADNGIPLPNVTSKILSKVIEYCKKHV   64 (101)
Q Consensus         6 ~v~L~S~DG~~f~v~~~~a~-~S~~i~~~l~~~~---~~~~Ipl~~v~~~~L~kIiewc~~h~   64 (101)
                      -|+++. +|+.|.+.+.+.. .|..++.|+.+..   ....|.|+++++.+++.+++|++.-.
T Consensus        27 Dv~l~v-~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~ll~~~Yt~~   88 (120)
T 2if5_A           27 DVVILV-EGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTAT   88 (120)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCSSCHHHHHHHHHHHHHSC
T ss_pred             CeEEEE-CCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCCCCHHHHHHHHHHHcCCC
Confidence            366665 6899999999954 7999999998642   24678999999999999999998643

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}

Probab=97.14  E-value=0.00078  Score=42.84  Aligned_cols=57  Identities=19%  Similarity=0.276  Sum_probs=45.6

Q ss_pred             eEEEEcCCCCeEEecHHH-HHHhHHHHHHHhhCCCCCCcccCCCCHHHHHHHHHHHHhhc
Q 035736            6 KITLKSSDGEAFEVDEAV-ALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHV   64 (101)
Q Consensus         6 ~v~L~S~DG~~f~v~~~~-a~~S~~i~~~l~~~~~~~~Ipl~~v~~~~L~kIiewc~~h~   64 (101)
                      -|+|+. +|+.|.+.+.+ |..|..++.|+.... ...|.|++++..+++.+++|++..+
T Consensus        27 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~mf~~~~-~~~i~l~~~~~~~f~~lL~fiYtg~   84 (135)
T 2yy9_A           27 DATLDV-GGLVFKAHWSVLACCSHFFQRIYGDGT-GGSVVLPAGFAEIFGLLLDFFYTGH   84 (135)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHTCC-----CCEEECGGGHHHHHHHHHHHHHSC
T ss_pred             ceEEEE-CCEEEehHHHHHHHhCHHHHHHHcCCC-CCeEEeCCCCHHHHHHHHHHHhCCC
Confidence            366664 68999999998 557999999997643 5679999999999999999998754

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A

Probab=97.09  E-value=0.0021  Score=39.87  Aligned_cols=56  Identities=16%  Similarity=0.344  Sum_probs=46.9

Q ss_pred             eEEEEcCCCCeEEecHHH-HHHhHHHHHHHhhCCCCCCcccCCCCHHHHHHHHHHHHhhc
Q 035736            6 KITLKSSDGEAFEVDEAV-ALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHV   64 (101)
Q Consensus         6 ~v~L~S~DG~~f~v~~~~-a~~S~~i~~~l~~~~~~~~Ipl~~v~~~~L~kIiewc~~h~   64 (101)
                      -|+|+. +|+.|.+.+.+ +..|..++.|+...  ...|.|+++++.+++.+++|++.-.
T Consensus        30 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~--~~~i~l~~~~~~~f~~ll~~~Ytg~   86 (121)
T 1buo_A           30 DVVIMV-DSQEFHAHRTVLACTSKMFEILFHRN--SQHYTLDFLSPKTFQQILEYAYTAT   86 (121)
T ss_dssp             CEEEEE-SSCEEEECHHHHHHHCHHHHHHTTSC--CSEEEECSSCHHHHHHHHHHHHHSC
T ss_pred             CEEEEE-CCEEEehhHHHHhhcCHHHHHHHcCC--CcEEEeCCCCHHHHHHHHHhhcCCC
Confidence            366665 68999999999 46899999999753  4678999999999999999998653

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}

Probab=97.08  E-value=0.0022  Score=41.63  Aligned_cols=59  Identities=15%  Similarity=0.316  Sum_probs=48.3

Q ss_pred             eEEEEcCCCCeEEecHHHH-HHhHHHHHHHhhCCC---CCCcccCCCCHHHHHHHHHHHHhhcc
Q 035736            6 KITLKSSDGEAFEVDEAVA-LESQTIKHMIEDDCA---DNGIPLPNVTSKILSKVIEYCKKHVE   65 (101)
Q Consensus         6 ~v~L~S~DG~~f~v~~~~a-~~S~~i~~~l~~~~~---~~~Ipl~~v~~~~L~kIiewc~~h~~   65 (101)
                      -|+|+. +|+.|.+.+.+. .+|..++.|+.....   ...|.|+++++.+++.+++|++...-
T Consensus        36 Dv~l~v-~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~Yt~~~   98 (172)
T 3htm_A           36 DCCLCV-AGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKA   98 (172)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHHHHHSCC
T ss_pred             ceEEEE-CCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecCCCHHHHHHHHHHHhCCCC
Confidence            366665 689999999995 679999999986422   46899999999999999999986543

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A

Probab=97.06  E-value=0.0018  Score=40.18  Aligned_cols=55  Identities=11%  Similarity=0.289  Sum_probs=46.0

Q ss_pred             eEEEEcCCCCeEEecHHHH-HHhHHHHHHHhhCCCCCCcccCCCCHHHHHHHHHHHHhh
Q 035736            6 KITLKSSDGEAFEVDEAVA-LESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKH   63 (101)
Q Consensus         6 ~v~L~S~DG~~f~v~~~~a-~~S~~i~~~l~~~~~~~~Ipl~~v~~~~L~kIiewc~~h   63 (101)
                      -++|+. +|+.|.+.+.+. .+|..++.|+...  ...|.++++++.+++.+++|++--
T Consensus        33 Dv~l~v-~~~~f~aHk~vLaa~S~~F~~~f~~~--~~~i~l~~~~~~~f~~~l~~~Ytg   88 (116)
T 3fkc_A           33 DVTVIV-EDRKFRAHKNILSASSTYFHQLFSVA--GQVVELSFIRAEIFAEILNYIYSS   88 (116)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHTTSC--CSEEEECSSCHHHHHHHHHHHTTS
T ss_pred             eEEEEE-CCEEEehhHHHHHHcCHHHHHHHcCC--CCEEEeCCCCHHHHHHHHHhhcCC
Confidence            356664 689999999995 6799999999764  467999999999999999998753

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}

Probab=97.05  E-value=0.0026  Score=40.90  Aligned_cols=57  Identities=18%  Similarity=0.304  Sum_probs=46.6

Q ss_pred             eEEEEcCCCCeEEecHHHHH-HhHHHHHHHhhCC-----CCCCcccCCCCHHHHHHHHHHHHhh
Q 035736            6 KITLKSSDGEAFEVDEAVAL-ESQTIKHMIEDDC-----ADNGIPLPNVTSKILSKVIEYCKKH   63 (101)
Q Consensus         6 ~v~L~S~DG~~f~v~~~~a~-~S~~i~~~l~~~~-----~~~~Ipl~~v~~~~L~kIiewc~~h   63 (101)
                      -|+|+. +|+.|.+.+.+.. .|..++.|+....     ....|.|+++++.+++.+++|++--
T Consensus        49 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~~f~~lL~fiYtg  111 (144)
T 2ppi_A           49 DAHLVL-DGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSG  111 (144)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSCHHHHHHHHHHHTTS
T ss_pred             ceEEEE-CCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCCHHHHHHHHHHHhCC
Confidence            356665 6899999999954 7999999998642     2457999999999999999998743

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A

Probab=96.99  E-value=0.0035  Score=39.05  Aligned_cols=58  Identities=14%  Similarity=0.220  Sum_probs=47.4

Q ss_pred             eEEEEcCCCCeEEecHHHH-HHhHHHHHHHhhCCC--CCCccc-CCCCHHHHHHHHHHHHhhc
Q 035736            6 KITLKSSDGEAFEVDEAVA-LESQTIKHMIEDDCA--DNGIPL-PNVTSKILSKVIEYCKKHV   64 (101)
Q Consensus         6 ~v~L~S~DG~~f~v~~~~a-~~S~~i~~~l~~~~~--~~~Ipl-~~v~~~~L~kIiewc~~h~   64 (101)
                      -|+|+. +|+.|.+.+.+. ..|..++.|+.....  ...|.| +++++.+++.+++|++.-.
T Consensus        31 Dv~l~v-~~~~~~aHk~iLaa~S~~F~~~f~~~~~e~~~~i~l~~~~~~~~f~~ll~~~Ytg~   92 (127)
T 1r29_A           31 DVVIVV-SREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSR   92 (127)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSCHHHHHHHHHHHHHSC
T ss_pred             CEEEEE-CCEEEehHHHHHHHhCHHHHHHhcCCccCCCCEEEeCCCCCHHHHHHHHHHHcCCC
Confidence            366665 589999999995 679999999986432  467889 8999999999999997643

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A

Probab=96.96  E-value=0.0035  Score=38.96  Aligned_cols=57  Identities=19%  Similarity=0.295  Sum_probs=46.7

Q ss_pred             eEEEEcCCCCeEEecHHHH-HHhHHHHHHHhhCCC-CCCcccCC-CCHHHHHHHHHHHHhh
Q 035736            6 KITLKSSDGEAFEVDEAVA-LESQTIKHMIEDDCA-DNGIPLPN-VTSKILSKVIEYCKKH   63 (101)
Q Consensus         6 ~v~L~S~DG~~f~v~~~~a-~~S~~i~~~l~~~~~-~~~Ipl~~-v~~~~L~kIiewc~~h   63 (101)
                      -|+|+. +|+.|.+.+.+. ..|..++.|+..... ...|.+++ ++..+++.+++|++.-
T Consensus        34 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~~~i~l~~~~~~~~f~~~l~~iYtg   93 (125)
T 3ohu_A           34 DVTLIV-ERKEFRAHRAVLAACSEYFWQALVGQTKNDLVVSLPEEVTARGFGPLLQFAYTA   93 (125)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHBHHHHHHHTTCCCSSCEEECCTTCCHHHHHHHHHHHTTS
T ss_pred             ceEEEE-CCEEEechHHHHHHcCHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhHcCC
Confidence            366664 689999999994 579999999986543 45788998 9999999999998754

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}

Probab=96.91  E-value=0.0022  Score=40.55  Aligned_cols=59  Identities=15%  Similarity=0.316  Sum_probs=48.1

Q ss_pred             eEEEEcCCCCeEEecHHHH-HHhHHHHHHHhhCCC---CCCcccCCCCHHHHHHHHHHHHhhcc
Q 035736            6 KITLKSSDGEAFEVDEAVA-LESQTIKHMIEDDCA---DNGIPLPNVTSKILSKVIEYCKKHVE   65 (101)
Q Consensus         6 ~v~L~S~DG~~f~v~~~~a-~~S~~i~~~l~~~~~---~~~Ipl~~v~~~~L~kIiewc~~h~~   65 (101)
                      -++|+. +|+.|.+.+.+. .+|..++.|+.....   ...|.++++++.+++.+++|++...-
T Consensus        27 Dv~l~v-~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~   89 (145)
T 4eoz_A           27 DCCLCV-AGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKA   89 (145)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHHHSCC
T ss_pred             ceEEEE-CCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhccCcc
Confidence            366665 689999999996 679999999986422   36899999999999999999987643

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A

Probab=96.83  E-value=0.0048  Score=38.17  Aligned_cols=56  Identities=23%  Similarity=0.272  Sum_probs=46.4

Q ss_pred             eEEEEcCCCCeEEecHHHH-HHhHHHHHHHhhCCCCCCcccCCCCHHHHHHHHHHHHhhc
Q 035736            6 KITLKSSDGEAFEVDEAVA-LESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHV   64 (101)
Q Consensus         6 ~v~L~S~DG~~f~v~~~~a-~~S~~i~~~l~~~~~~~~Ipl~~v~~~~L~kIiewc~~h~   64 (101)
                      -|+|+. +|+.|.+.+.+. ..|..+++|+...  ...|.++++++.+++.+++|++.-.
T Consensus        29 Dv~l~v-~~~~~~aHk~vLaa~S~yF~~~f~~~--~~~i~l~~~~~~~f~~ll~~~Ytg~   85 (119)
T 2q81_A           29 DCTFVV-DGVHFKAHKAVLAACSEYFKMLFVDQ--KDVVHLDISNAAGLGQVLEFMYTAK   85 (119)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHHC--CSGGGGGGCCHHHHHHHHHHHHHSC
T ss_pred             ceEEEE-CCEEEehhHHHHHHcCHHHHHHHcCC--CCEEEeCCCCHHHHHHHHHHHcCCC
Confidence            366664 689999999995 5799999999863  4678899999999999999998653

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}

Probab=96.09  E-value=0.023  Score=35.22  Aligned_cols=58  Identities=22%  Similarity=0.326  Sum_probs=45.6

Q ss_pred             eEEEEcCCCCeEEecHHHH-HHhHHHHHHHhhCCC-CCCcccC-CCCHHHHHHHHHHHHhhc
Q 035736            6 KITLKSSDGEAFEVDEAVA-LESQTIKHMIEDDCA-DNGIPLP-NVTSKILSKVIEYCKKHV   64 (101)
Q Consensus         6 ~v~L~S~DG~~f~v~~~~a-~~S~~i~~~l~~~~~-~~~Ipl~-~v~~~~L~kIiewc~~h~   64 (101)
                      -|+|+. +|+.|.+.+.+. ..|..++.|+.+... ...|.+| +++...++.+++|++.-.
T Consensus        31 Dv~l~v-~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~i~l~~~v~~~~f~~lL~~iYtg~   91 (124)
T 2ihc_A           31 DVTIFV-EGQRFRAHRSVLAACSSYFHSRIVGQADGELNITLPEEVTVKGFEPLIQFAYTAK   91 (124)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHBHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHSE
T ss_pred             CEEEEE-CCEEEecHHHHHHHcCHHHHHHHcCCCCCCceEeecCCcCHHHHHHHHHHhcCCC
Confidence            356655 589999999995 579999999986532 3468885 899999999999998654

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}

Probab=95.99  E-value=0.029  Score=35.39  Aligned_cols=58  Identities=21%  Similarity=0.307  Sum_probs=46.6

Q ss_pred             eEEEEcCCCCeEEecHHHH-HHhHHHHHHHhhCCC-CCCcccC-CCCHHHHHHHHHHHHhhc
Q 035736            6 KITLKSSDGEAFEVDEAVA-LESQTIKHMIEDDCA-DNGIPLP-NVTSKILSKVIEYCKKHV   64 (101)
Q Consensus         6 ~v~L~S~DG~~f~v~~~~a-~~S~~i~~~l~~~~~-~~~Ipl~-~v~~~~L~kIiewc~~h~   64 (101)
                      -|+|+. +|+.|.+.+.+. ..|..++.|+..... ...|.++ +++...++.+++|++.-.
T Consensus        38 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~~~i~l~~~v~~~~~~~lL~~~Ytg~   98 (138)
T 2z8h_A           38 DVTVLV-EGQRFRAHRSVLAACSSYFHSRIVGQTDAELTVTLPEEVTVKGFEPLIQFAYTAK   98 (138)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHHTTCCCTTEEEECCTTSCHHHHHHHHHHHHHSC
T ss_pred             CeEEEE-CCEEEechHHHHHHcCHHHHHHHhcCCCCCceEEeCCCCCHHHHHHHHHHhcCCC
Confidence            366665 589999999995 579999999986543 2468886 899999999999998753

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=95.82  E-value=0.023  Score=40.36  Aligned_cols=57  Identities=16%  Similarity=0.335  Sum_probs=46.3

Q ss_pred             eEEEEcCCCCeEEecHHHH-HHhHHHHHHHhhCC---CCCCcccCCCCHHHHHHHHHHHHhh
Q 035736            6 KITLKSSDGEAFEVDEAVA-LESQTIKHMIEDDC---ADNGIPLPNVTSKILSKVIEYCKKH   63 (101)
Q Consensus         6 ~v~L~S~DG~~f~v~~~~a-~~S~~i~~~l~~~~---~~~~Ipl~~v~~~~L~kIiewc~~h   63 (101)
                      -|+|+. +|+.|.+.+.++ .+|..++.|+....   ....|.|+++++.+++.+++|++.-
T Consensus       176 Dv~l~v-~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~  236 (312)
T 3hqi_A          176 DCCLCV-AGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTG  236 (312)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHHHS
T ss_pred             ceEEEE-CCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhhcCC
Confidence            456665 689999999994 67999999997532   2468999999999999999999864

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B

Probab=95.78  E-value=0.014  Score=40.48  Aligned_cols=58  Identities=17%  Similarity=0.291  Sum_probs=44.6

Q ss_pred             eEEEEcCCCCeEEecHHHHH-HhHHHHHHHhhCC-----CCCCcccCCCCHHHHHHHHHHHHhhc
Q 035736            6 KITLKSSDGEAFEVDEAVAL-ESQTIKHMIEDDC-----ADNGIPLPNVTSKILSKVIEYCKKHV   64 (101)
Q Consensus         6 ~v~L~S~DG~~f~v~~~~a~-~S~~i~~~l~~~~-----~~~~Ipl~~v~~~~L~kIiewc~~h~   64 (101)
                      -|+|.. +|+.|.+.+.+.. .|..++.|+....     ....|+++++++.+++.+++|++.-.
T Consensus        33 Dv~l~v-~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~~ll~~~Yt~~   96 (256)
T 3hve_A           33 DAHLVL-DGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQ   96 (256)
T ss_dssp             CEEEEE-TTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCCHHHHHHHHHHHHHSC
T ss_pred             ceEEEE-CCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHHHHHHHHhhccCCC
Confidence            356665 6899999999965 6999999997532     24579999999999999999998754

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A

Probab=95.61  E-value=0.0096  Score=41.81  Aligned_cols=59  Identities=17%  Similarity=0.269  Sum_probs=44.2

Q ss_pred             eEEEEcC--CCCeEEecHHHHH-HhHHHHHHHhhCC---CCCCcccC------CCCHHHHHHHHHHHHhhc
Q 035736            6 KITLKSS--DGEAFEVDEAVAL-ESQTIKHMIEDDC---ADNGIPLP------NVTSKILSKVIEYCKKHV   64 (101)
Q Consensus         6 ~v~L~S~--DG~~f~v~~~~a~-~S~~i~~~l~~~~---~~~~Ipl~------~v~~~~L~kIiewc~~h~   64 (101)
                      -|+|+..  ||+.|.+.+.+.. .|..++.|+.+..   ....|.|+      ++++.+++.+++|++...
T Consensus        34 Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg~  104 (279)
T 3i3n_A           34 DITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGR  104 (279)
T ss_dssp             CEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHHHSE
T ss_pred             CeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCcCC
Confidence            3677765  7999999999955 6999999987542   23578887      899999999999998654

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0

Probab=93.13  E-value=0.034  Score=34.52  Aligned_cols=50  Identities=8%  Similarity=0.135  Sum_probs=39.3

Q ss_pred             EEEEcCCCCeEEecHHHHH-HhHHHHHHHhhCCCCCCcccCCCCHHHHHHHHHHHHhh
Q 035736            7 ITLKSSDGEAFEVDEAVAL-ESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKH   63 (101)
Q Consensus         7 v~L~S~DG~~f~v~~~~a~-~S~~i~~~l~~~~~~~~Ipl~~v~~~~L~kIiewc~~h   63 (101)
                      |+|.. +|+.|.+.+.+.. .|..++.      ....|.|+++++.+++.+++|++.-
T Consensus        33 v~l~v-~~~~f~aHk~vLaa~S~yF~~------~~~~i~l~~v~~~~f~~ll~fiYtg   83 (119)
T 3m5b_A           33 TLITV-GSQEFPAHSLVLAGVSQQLGR------RGQWALGEGISPSTFAQLLNFVYGE   83 (119)
T ss_dssp             EEEEE-TTEEEEECHHHHHTTCGGGCC------CEEEECCSSCCHHHHHHHHHHHTTC
T ss_pred             eEEEE-CCEEEeeEHHHHHHcCHHHhc------CCCEEEeCCCCHHHHHHHHHHHcCC
Confidence            56665 6999999999955 4766653      2356889999999999999998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	101
d1hv2a_	99	d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomy	4e-26
d2c9wc1	96	d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens	1e-25
d1fs1b2	61	d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Sk	6e-25
d1nexa2	72	d.42.1.1 (A:4-103) Centromere DNA-binding protein	9e-24
d1fs1b1	55	a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45,	2e-05
d1nexa1	70	a.157.1.1 (A:116-185) Centromere DNA-binding prote	2e-05

>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 99

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 90.6 bits (225), Expect = 4e-26
 Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 12/101 (11%)

Query: 3   TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDC--ADNGIPLPNVTSKILSKVIEYC 60
           +   +TL S D + +E+  + A+ S T+K MIE     +   I L    S IL K +EY 
Sbjct: 2   SQDFVTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYL 61

Query: 61  KKHVEASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLIL 101
             +++ S   +      DD++  ++     +      +L+L
Sbjct: 62  NYNLKYSGVSED-----DDEIPEFE-----IPTEMSLELLL 92

>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.4 bits (222), Expect = 1e-25
 Identities = 24/100 (24%), Positives = 37/100 (37%), Gaps = 18/100 (18%)

Query: 7   ITLKSSDGEAFEVDEAVALESQTIKHMIEDDCA-----DNGIPLPNVTSKILSKVIEYCK 61
           + L SSDG  F V    AL S TIK M+           N +    + S +LSKV  Y  
Sbjct: 3   VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 62

Query: 62  KHVEASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLIL 101
             V  + S          ++  +      +      +L++
Sbjct: 63  YKVRYTNS--------STEIPEFP-----IAPEIALELLM 89

>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.7 bits (215), Expect = 6e-25
 Identities = 32/60 (53%), Positives = 41/60 (68%), Gaps = 1/60 (1%)

Query: 6  KITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVE 65
           I L+SSDGE FEVD  +A +S TIK M+ED   D  +PLPNV + IL KVI++C  H +
Sbjct: 2  SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDP-VPLPNVNAAILKKVIQWCTHHKD 60

>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 84.1 bits (208), Expect = 9e-24
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 7/67 (10%)

Query: 6  KITLKSSDGEAFEVDEAVALESQTIKHMIED-------DCADNGIPLPNVTSKILSKVIE 58
           + L S +GE F VD+ +A  S  +K+ + D       D  +  +P+PNV S +L KVIE
Sbjct: 2  NVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIE 61

Query: 59 YCKKHVE 65
          + + H +
Sbjct: 62 WAEHHRD 68

>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (86), Expect = 2e-05
 Identities = 13/19 (68%), Positives = 16/19 (84%)

Query: 83  AWDTDFVKVDQATLFDLIL 101
            WD +F+KVDQ TLF+LIL
Sbjct: 2   VWDQEFLKVDQGTLFELIL 20

>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 70

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.0 bits (86), Expect = 2e-05
 Identities = 10/21 (47%), Positives = 17/21 (80%)

Query: 81  LKAWDTDFVKVDQATLFDLIL 101
           + +WD +F+KVDQ  L+++IL
Sbjct: 1   VDSWDREFLKVDQEMLYEIIL 21

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	101
d1hv2a_	99	Elongin C {Baker's yeast (Saccharomyces cerevisiae	99.96
d2c9wc1	96	Elongin C {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1nexa2	72	Centromere DNA-binding protein complex Cbf3 subuni	99.94
d1fs1b2	61	Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa	99.93
d1fs1b1	55	Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa	97.71
d1buoa_	121	Promyelocytic leukaemia zinc finger (PLZF) protein	97.06
d1r29a_	122	B-cell lymphoma 6 (Bcl6) protein BTB domain {Human	96.84

>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=5e-30  Score=159.52  Aligned_cols=90  Identities=30%  Similarity=0.484  Sum_probs=76.3

Q ss_pred             CCCCceEEEEcCCCCeEEecHHHHHHhHHHHHHHhhCCC--CCCcccCCCCHHHHHHHHHHHHhhcccCCCccccCCCCC
Q 035736            1 MSTSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCA--DNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRATSGVD   78 (101)
Q Consensus         1 m~~~~~v~L~S~DG~~f~v~~~~a~~S~~i~~~l~~~~~--~~~Ipl~~v~~~~L~kIiewc~~h~~~~~~~~~~~~~~~   78 (101)
                      || +.+|+|+|+||.+|.|++++|++|+||++||++.+.  +.+||||+|+|.+|+|||+||+||++++...+.     .
T Consensus         1 m~-~~~v~L~SsDg~~f~V~~~~A~~S~tI~~ml~~~~~e~~~~Ipl~~V~s~iL~kViey~~~h~~~~~~~~~-----~   74 (99)
T d1hv2a_           1 MS-QDFVTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSED-----D   74 (99)
T ss_dssp             CC-CSEEEEEETTTEEEEEEHHHHTTCHHHHHHHHSSTTTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSS-----C
T ss_pred             CC-CCeEEEEcCCCCEEEeeHHHHHHhHHHHHHHHccCCCCcCccccCCCChHHHHHHHHHHHHhhhCcCcccc-----c
Confidence            77 579999999999999999999999999999998753  568999999999999999999999987642221     2


Q ss_pred             CCcChhhhhhhccChhhhhhhhC
Q 035736           79 DDLKAWDTDFVKVDQATLFDLIL  101 (101)
Q Consensus        79 ~~~~~WD~~Fl~~~~~~Lf~li~  101 (101)
                      ..+++||     ++++.||+||+
T Consensus        75 ~~~~efd-----vd~~~l~eLi~   92 (99)
T d1hv2a_          75 DEIPEFE-----IPTEMSLELLL   92 (99)
T ss_dssp             SSCCCCC-----CCHHHHHHHHH
T ss_pred             ccCCCCC-----CCHHHHHHHHH
Confidence            3456664     89999999973

>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.3e-28  Score=150.53  Aligned_cols=83  Identities=29%  Similarity=0.434  Sum_probs=66.1

Q ss_pred             eEEEEcCCCCeEEecHHHHHHhHHHHHHHhhCCC-----CCCcccCCCCHHHHHHHHHHHHhhcccCCCccccCCCCCCC
Q 035736            6 KITLKSSDGEAFEVDEAVALESQTIKHMIEDDCA-----DNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRATSGVDDD   80 (101)
Q Consensus         6 ~v~L~S~DG~~f~v~~~~a~~S~~i~~~l~~~~~-----~~~Ipl~~v~~~~L~kIiewc~~h~~~~~~~~~~~~~~~~~   80 (101)
                      +|+|+|+||.+|.|++++|++|++|++||++.+.     +.+||||+|+|.+|+||++||+||++++..        +..
T Consensus         2 ~i~L~SsDg~~f~V~~~~A~~S~tI~~ml~~~~~~~e~~~~~IpL~nV~s~iL~kViey~~~h~~~~~~--------~~~   73 (96)
T d2c9wc1           2 YVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNS--------STE   73 (96)
T ss_dssp             EEEEECTTCCEEEEEHHHHTTSHHHHHC------------CEEECTTCCHHHHHHHHHHHHHHHHTC------------C
T ss_pred             EEEEEcCCCCEEEeeHHHHHHhHHHHHHHhccCccccCCCCeeECCCCCHHHHHHHHHHHHhhccCcCC--------cCC
Confidence            6999999999999999999999999999987542     468999999999999999999999987641        334


Q ss_pred             cChhhhhhhccChhhhhhhhC
Q 035736           81 LKAWDTDFVKVDQATLFDLIL  101 (101)
Q Consensus        81 ~~~WD~~Fl~~~~~~Lf~li~  101 (101)
                      +++||     ++++.||+||+
T Consensus        74 ~~~fd-----i~~~~l~eLi~   89 (96)
T d2c9wc1          74 IPEFP-----IAPEIALELLM   89 (96)
T ss_dssp             CCCCC-----CCHHHHHHHHH
T ss_pred             CCCCc-----CCHHHHHHHHH
Confidence            56664     88999999973

>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.3e-27  Score=140.98  Aligned_cols=64  Identities=34%  Similarity=0.566  Sum_probs=55.2

Q ss_pred             eEEEEcCCCCeEEecHHHHHHhHHHHHHHhhCCC-------CCCcccCCCCHHHHHHHHHHHHhhcccCCC
Q 035736            6 KITLKSSDGEAFEVDEAVALESQTIKHMIEDDCA-------DNGIPLPNVTSKILSKVIEYCKKHVEASKS   69 (101)
Q Consensus         6 ~v~L~S~DG~~f~v~~~~a~~S~~i~~~l~~~~~-------~~~Ipl~~v~~~~L~kIiewc~~h~~~~~~   69 (101)
                      +|+|+|+||++|.|++++|++|+||++||++.+.       ..+||||+|+|.+|+|||+||+||+++|+|
T Consensus         2 ~I~L~SsDg~~F~v~~~~a~~S~tIk~ml~~~~~~~~~~~~~~~Ipl~~V~s~iL~kVieyc~~H~~dp~P   72 (72)
T d1nexa2           2 NVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFP   72 (72)
T ss_dssp             EEEEECTTSCEEEEEHHHHTTSHHHHHTC-------------CEEECTTCCHHHHHHHHHHHHHTTTCCCC
T ss_pred             eeEEEeCCCCEEEecHHHHHHHHHHHHHHHhcCccccccCCCCcccCCCcCHHHHHHHHHHHHHccCCCCC
Confidence            6999999999999999999999999999997653       247999999999999999999999998863

>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.2e-27  Score=135.20  Aligned_cols=60  Identities=52%  Similarity=0.785  Sum_probs=56.8

Q ss_pred             eEEEEcCCCCeEEecHHHHHHhHHHHHHHhhCCCCCCcccCCCCHHHHHHHHHHHHhhccc
Q 035736            6 KITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEA   66 (101)
Q Consensus         6 ~v~L~S~DG~~f~v~~~~a~~S~~i~~~l~~~~~~~~Ipl~~v~~~~L~kIiewc~~h~~~   66 (101)
                      .|+|+|+||++|.|++++|++|++|++|+++.+ .++||||+|+|.+|+||++||+||+++
T Consensus         2 ~I~L~SsDg~~f~v~~~~a~~S~tI~~ml~~~~-~~~Ipl~~V~s~iL~kVieyc~~H~~d   61 (61)
T d1fs1b2           2 SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLG-MDPVPLPNVNAAILKKVIQWCTHHKDD   61 (61)
T ss_dssp             EEEEECTTSCEEEEEGGGGGTCHHHHHHHHHTC-CSSEECTTCCHHHHHHHHHHHHHHTTC
T ss_pred             eEEEEecCCCEEEecHHHHHHhHHHHHHHhcCC-CCCcccCCcCHHHHHHHHHHHHHccCC
Confidence            699999999999999999999999999999876 568999999999999999999999874

>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=5.7e-06  Score=44.81  Aligned_cols=19  Identities=63%  Similarity=1.202  Sum_probs=18.1

Q ss_pred             ChhhhhhhccChhhhhhhh
Q 035736           82 KAWDTDFVKVDQATLFDLI  100 (101)
Q Consensus        82 ~~WD~~Fl~~~~~~Lf~li  100 (101)
                      |+||++|+++|+..||+||
T Consensus         1 p~wD~~F~~~d~~~Lf~Li   19 (55)
T d1fs1b1           1 PVWDQEFLKVDQGTLFELI   19 (55)
T ss_dssp             CHHHHHHTCSCHHHHHHHH
T ss_pred             ChHhHHHHHcCHHHHHHHH
Confidence            6899999999999999997

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.0011  Score=40.30  Aligned_cols=56  Identities=16%  Similarity=0.344  Sum_probs=46.1

Q ss_pred             eEEEEcCCCCeEEecHHH-HHHhHHHHHHHhhCCCCCCcccCCCCHHHHHHHHHHHHhhc
Q 035736            6 KITLKSSDGEAFEVDEAV-ALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHV   64 (101)
Q Consensus         6 ~v~L~S~DG~~f~v~~~~-a~~S~~i~~~l~~~~~~~~Ipl~~v~~~~L~kIiewc~~h~   64 (101)
                      -++|+. +|++|.+.+.+ |..|..+++++...  ...+.++++++.+++.+++|++.-+
T Consensus        30 Dv~l~v-~~~~~~aHk~vLaa~S~~F~~lf~~~--~~~i~~~~v~~~~f~~ll~~~Ytg~   86 (121)
T d1buoa_          30 DVVIMV-DSQEFHAHRTVLACTSKMFEILFHRN--SQHYTLDFLSPKTFQQILEYAYTAT   86 (121)
T ss_dssp             CEEEEE-SSCEEEECHHHHHHHCHHHHHHTTSC--CSEEEECSSCHHHHHHHHHHHHHSC
T ss_pred             eEEEEE-CCEEEEEEHHHhcccChhhhhhccCc--cceeecCCCCHHHHHHHHHheEccc
Confidence            366665 78899999998 56799999999754  3568899999999999999998543

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.0021  Score=38.67  Aligned_cols=57  Identities=11%  Similarity=0.138  Sum_probs=44.3

Q ss_pred             eEEEEcCCCCeEEecHHHH-HHhHHHHHHHhhCCCC---CCcccCCCCHHHHHHHHHHHHhh
Q 035736            6 KITLKSSDGEAFEVDEAVA-LESQTIKHMIEDDCAD---NGIPLPNVTSKILSKVIEYCKKH   63 (101)
Q Consensus         6 ~v~L~S~DG~~f~v~~~~a-~~S~~i~~~l~~~~~~---~~Ipl~~v~~~~L~kIiewc~~h   63 (101)
                      -++|+. +|+.|.+.+.+. ..|..+++|+.+...+   ..+-++++++..++.+++|++.-
T Consensus        27 Dv~l~v-~~~~~~~Hk~vLa~~S~~F~~~f~~~~~e~~~~~~~~~~v~~~~f~~ll~~~Ytg   87 (122)
T d1r29a_          27 DVVIVV-SREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTS   87 (122)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSCHHHHHHHHHHHHHS
T ss_pred             EEEEEE-CCEEEEEehHHhhhCCHHHHHHhccchhhhcceeeeecccCHHHHHHHHhhhcCC
Confidence            366664 788999999995 5799999999754322   23445789999999999999854