Citrus Sinensis ID: 035748
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 655 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FRK5 | 617 | Uncharacterized membrane | yes | no | 0.912 | 0.969 | 0.549 | 0.0 |
| >sp|Q9FRK5|Y1514_ARATH Uncharacterized membrane protein At1g75140 OS=Arabidopsis thaliana GN=At1g75140 PE=1 SV=3 | Back alignment and function desciption |
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Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/670 (54%), Positives = 474/670 (70%), Gaps = 72/670 (10%)
Query: 1 MANFHKGK----FFLLYLLFIFAFSPNDKILVSSIQPEHDRVPYHEPSE-----TESEGE 51
MA+ GK FF + L+ +F SP+ + +S E D +PY T SE +
Sbjct: 1 MADSQNGKSAFFFFFVSLILLF-LSPSYSDVTAS---ESDPIPYENSDASPGVVTSSESD 56
Query: 52 VKFGQQDLLLHKLEELVRNLSDIVTKLESKFSGTSKVSSLDEKRNLGSLRIALEEKDKIK 111
+Q + LH+LEELVRNL+++V +L++K S T + K +I
Sbjct: 57 ----RQGVSLHRLEELVRNLTELVARLDAKLSET-----------------PFKVKKEIT 95
Query: 112 RRKYDDEKLIKEFKEEDMIRDGERVRSVSVTKYSPFWSERFQFVSAVKLESDPTCINILP 171
R + + E+ ++ SVTKYSPFWSERF+F SAVKL+S+ TCIN+LP
Sbjct: 96 RDEIE-----------------EKAKAFSVTKYSPFWSERFEFTSAVKLDSEATCINVLP 138
Query: 172 FRDYEGHSKYVAVGDDKGRVFVFLRNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTG 231
FRD+EG SKY AVGD GRVFVFLRNGDV VEF+T + P+TAMVSY+SVYKNES +VTG
Sbjct: 139 FRDHEGLSKYFAVGDSSGRVFVFLRNGDVLVEFFTTCDSPITAMVSYMSVYKNESFVVTG 198
Query: 232 HENGVILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSA 291
H++GVIL+H++ E GED +S V+ENVGK+ TE+G L VTLLEVHH+GR+RYIL+
Sbjct: 199 HQSGVILLHRLREGSIGEDLNSAVMENVGKFDGTEDG---LQVTLLEVHHVGRVRYILAT 255
Query: 292 DASGKIRVFKENGMVHGTAAMLSSKPLVFLKQRLLFLTECGAGSLDLRTMKLRETECEGL 351
D SGK+ VF EN V+G+ + +S+PLVFLKQRLLFLTE GAGSLDLR+MK+RE+ECEGL
Sbjct: 256 DLSGKLTVFTENRTVYGSVSP-TSRPLVFLKQRLLFLTETGAGSLDLRSMKIRESECEGL 314
Query: 352 NNSLVRNYVFDATERSKAYGYTSEGDLIHVLLLGDVTNFKCRVRSKRKFDMSEPLAFQAI 411
N+SL R+YVFDA+ER+KAYG+TSEG++IHVLLLGD+ NFKCRVRSK+K M EP+A QAI
Sbjct: 315 NHSLARSYVFDASERAKAYGFTSEGEIIHVLLLGDIMNFKCRVRSKKKVQMEEPVALQAI 374
Query: 412 KGYLLVVCEEKIFVYNVSAQHYVRSGGPRLLFSAGLDEIRSSFLNYQVMDVDVNDEKRRS 471
KGYLL+V +EK+FVYNVS QHYVR+ GPRLLF A L++IRS+FL+++ + +K
Sbjct: 375 KGYLLIVNQEKVFVYNVSTQHYVRTTGPRLLFPAALEDIRSTFLSHRESTKTTDHQKLEK 434
Query: 472 V-PLIASDRDKLLVLGLGGGYVGMYRSNLPVFKGESSVMSWTGPVFFFILFLFGVWHFFA 530
V PLIASDR+KLLV+GLG GYV Y+S LP+ K E + M W+ PVFFFILFLFG WHFF+
Sbjct: 435 VTPLIASDREKLLVMGLGDGYVATYKSKLPISKAEFNTMLWSSPVFFFILFLFGAWHFFS 494
Query: 531 KKKEALTSWGPDDPFSSTTAATGAPIGSGAGERPFVDSSSRNADIMDLRSGGMRGPSRRY 590
KKKE+LT+WGPDDPFSSTT ++ + + F +S+ RN D MDLR RRY
Sbjct: 495 KKKESLTAWGPDDPFSSTTMSSSS-TTTAQNSSAFSESTRRNDDHMDLR--------RRY 545
Query: 591 ASPSRY-PGGTTSSFRP-GSADTNARPPVD-PNFR-SASELKFR-GSTLESAGFPKR--S 643
SPSRY PG T ++R GS D ++R PV+ N+R +A E+K+R GS L+S GF KR S
Sbjct: 546 VSPSRYPPGAATGAYRSVGSNDPSSRAPVETTNYRTTAQEMKYRGGSGLDSGGFGKRRES 605
Query: 644 LYVNNQVVDD 653
L+ NN+ +DD
Sbjct: 606 LFGNNKALDD 615
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Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 655 | ||||||
| 224132114 | 637 | predicted protein [Populus trichocarpa] | 0.958 | 0.985 | 0.646 | 0.0 | |
| 255538592 | 651 | conserved hypothetical protein [Ricinus | 0.978 | 0.984 | 0.664 | 0.0 | |
| 225458323 | 612 | PREDICTED: uncharacterized membrane prot | 0.929 | 0.995 | 0.656 | 0.0 | |
| 302142472 | 691 | unnamed protein product [Vitis vinifera] | 0.929 | 0.881 | 0.656 | 0.0 | |
| 356553889 | 626 | PREDICTED: uncharacterized membrane prot | 0.883 | 0.924 | 0.634 | 0.0 | |
| 356562333 | 631 | PREDICTED: uncharacterized membrane prot | 0.903 | 0.938 | 0.613 | 0.0 | |
| 449496156 | 610 | PREDICTED: uncharacterized membrane prot | 0.890 | 0.955 | 0.630 | 0.0 | |
| 449469991 | 632 | PREDICTED: uncharacterized membrane prot | 0.890 | 0.922 | 0.630 | 0.0 | |
| 449470148 | 605 | PREDICTED: uncharacterized membrane prot | 0.864 | 0.935 | 0.593 | 0.0 | |
| 449496162 | 605 | PREDICTED: uncharacterized membrane prot | 0.864 | 0.935 | 0.591 | 0.0 |
| >gi|224132114|ref|XP_002321259.1| predicted protein [Populus trichocarpa] gi|222862032|gb|EEE99574.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 866 bits (2238), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/664 (64%), Positives = 522/664 (78%), Gaps = 36/664 (5%)
Query: 1 MANFHKGKFFLLYLLFIFAFSPN----DKILVSSIQP-EHDRVPYHEPSETESEGEVKFG 55
MAN H+GK FL L + SP+ D VS+ Q EHD + + E ES+ +K
Sbjct: 1 MANTHQGKLFLFLYLLSISCSPSRILADSSSVSTQQELEHD-INHARYQEQESDTRIKLN 59
Query: 56 QQDLLLHKLEELVRNLSDIVTKLESKFSGTSKVSSLDEKRNLGSLRIALEEKDKIKRRKY 115
QQ++LLHKLE+LVRNLS+IV +LE K S KV+S+ ++N +E ++I + K+
Sbjct: 60 QQEVLLHKLEQLVRNLSEIVARLEPKLSELPKVASIGREQN--------QEAERIDQGKF 111
Query: 116 DDEKLIKEFKEEDMIRDGERVRSVSVTKYSPFWSERFQFVSAVKLESDPTCINILPFRDY 175
DD GERVR+ SVTKYSP WSERFQFVSAVKL+SD TCI++LPFRDY
Sbjct: 112 DD---------------GERVRTGSVTKYSPLWSERFQFVSAVKLDSDATCIHVLPFRDY 156
Query: 176 EGHSKYVAVGDDKGRVFVFLRNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENG 235
EG SKYVAVGDD+GRV+VFLRNGDV+VEFYTMS P+T MVSY+S +KN+S +VTGH+NG
Sbjct: 157 EGLSKYVAVGDDRGRVYVFLRNGDVAVEFYTMSSSPITTMVSYLSAFKNQSTVVTGHQNG 216
Query: 236 VILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASG 295
IL+HK++ NGE+WS+L +ENVGK+ E+ ++ +++LEVHH+GR RYILS D G
Sbjct: 217 AILMHKLHYVSNGEEWSTLSMENVGKFAFHEDWDQRSPISILEVHHVGRSRYILSLDVRG 276
Query: 296 KIRVFKENGMVHGTAAMLSSKPLVFLKQRLLFLTECGAGSLDLRTMKLRETECEGLNNSL 355
IRVF+ENG VHG+ AM +S+PL FLKQRLLFLTE GAGSLDLR+MK+RE+ECEGL++S+
Sbjct: 277 MIRVFRENGTVHGS-AMPTSRPLAFLKQRLLFLTESGAGSLDLRSMKVRESECEGLDHSV 335
Query: 356 VRNYVFDATERSKAYGYTSEGDLIHVLLLGDVTNFKCRVRSKRKFDMSEPLAFQAIKGYL 415
R YVFDATERSKAYG+TSEG+LI VLLLGD+ NFKCRVRSKRKFDM EPLA Q+IKGYL
Sbjct: 336 ARYYVFDATERSKAYGFTSEGELIQVLLLGDIMNFKCRVRSKRKFDMEEPLALQSIKGYL 395
Query: 416 LVVCEEKIFVYNVSAQHYVRSGGPRLLFSAGLDEIRSSFLNYQVMDVDVNDEKRRSVPLI 475
VV EEK+FVYNVS+QHYVR GGPRLLFSAGLDEI+SSFLNYQ+ + + E+RR +PLI
Sbjct: 396 FVVNEEKVFVYNVSSQHYVRVGGPRLLFSAGLDEIKSSFLNYQLTNAPI--ERRRVMPLI 453
Query: 476 ASDRDKLLVLGLGGGYVGMYRSNLPVFKGESSVMSWTGPVFFFILFLFGVWHFFAKKKEA 535
ASDR+K++VLGLG GYVGMYRSNLP+FKGE + M WT PV F+LFLFG W FFAKKKEA
Sbjct: 454 ASDREKIVVLGLGSGYVGMYRSNLPIFKGEFNTMLWTSPVLLFVLFLFGAWQFFAKKKEA 513
Query: 536 LTSWGPDDPFSSTTAATGAPIGSGA-GERPFVDSSSRNADIMDLRSGGMRGPSRRYASPS 594
LTSWGPDDPFSS +A GAP+GS A +R +VDSSSR+ D+M+LR+GG+ GP+RRY SPS
Sbjct: 514 LTSWGPDDPFSSASATIGAPVGSSASADRSYVDSSSRSTDMMELRAGGLIGPTRRYPSPS 573
Query: 595 RYPGGTTSSFRPGSADTNARP-PVDPNFRSASELKFRGSTLESAGFPKR--SLYVNNQVV 651
RYPGG TSSFRPGSAD N RP +DPN+R++SEL FRG LES GFP R +L+VNNQVV
Sbjct: 574 RYPGGATSSFRPGSADANTRPSSIDPNYRASSELTFRGPALESTGFPIRRENLFVNNQVV 633
Query: 652 DDSN 655
DD N
Sbjct: 634 DDVN 637
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255538592|ref|XP_002510361.1| conserved hypothetical protein [Ricinus communis] gi|223551062|gb|EEF52548.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|225458323|ref|XP_002281580.1| PREDICTED: uncharacterized membrane protein At1g75140-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|302142472|emb|CBI19675.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356553889|ref|XP_003545283.1| PREDICTED: uncharacterized membrane protein At1g75140-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356562333|ref|XP_003549426.1| PREDICTED: uncharacterized membrane protein At1g75140-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449496156|ref|XP_004160057.1| PREDICTED: uncharacterized membrane protein At1g75140-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449469991|ref|XP_004152702.1| PREDICTED: uncharacterized membrane protein At1g75140-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449470148|ref|XP_004152780.1| PREDICTED: uncharacterized membrane protein At1g75140-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449496162|ref|XP_004160059.1| PREDICTED: uncharacterized membrane protein At1g75140-like [Cucumis sativus] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 655 | ||||||
| TAIR|locus:2025157 | 617 | AT1G75140 "AT1G75140" [Arabido | 0.854 | 0.907 | 0.573 | 7.4e-176 | |
| TAIR|locus:2016497 | 605 | AT1G19370 [Arabidopsis thalian | 0.854 | 0.925 | 0.532 | 4.1e-152 |
| TAIR|locus:2025157 AT1G75140 "AT1G75140" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1631 (579.2 bits), Expect = 7.4e-176, Sum P(2) = 7.4e-176
Identities = 339/591 (57%), Positives = 433/591 (73%)
Query: 74 IVTKLESKFSGTSKVSSLDEK-RNLGSLRIALEEKDKIKRRKYDDEKLIKEFKEEDMIRD 132
+VT ES G S + L+E RNL L L+ K + + K+ KE +++
Sbjct: 49 VVTSSESDRQGVS-LHRLEELVRNLTELVARLDAK--LSETPF---KVKKEITRDEI--- 99
Query: 133 GERVRSVSVTKYSPFWSERFQFVSAVKLESDPTCINILPFRDYEGHSKYVAVGDDKGRVF 192
E+ ++ SVTKYSPFWSERF+F SAVKL+S+ TCIN+LPFRD+EG SKY AVGD GRVF
Sbjct: 100 EEKAKAFSVTKYSPFWSERFEFTSAVKLDSEATCINVLPFRDHEGLSKYFAVGDSSGRVF 159
Query: 193 VFLRNGDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILIHKVYEKPNGEDWS 252
VFLRNGDV VEF+T + P+TAMVSY+SVYKNES +VTGH++GVIL+H++ E GED +
Sbjct: 160 VFLRNGDVLVEFFTTCDSPITAMVSYMSVYKNESFVVTGHQSGVILLHRLREGSIGEDLN 219
Query: 253 SLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKENGMVHGTAAM 312
S V+ENVGK+ TE +GL VTLLEVHH+GR+RYIL+ D SGK+ VF EN V+G+ +
Sbjct: 220 SAVMENVGKFDGTE---DGLQVTLLEVHHVGRVRYILATDLSGKLTVFTENRTVYGSVSP 276
Query: 313 LSSKPLVFLKQRLLFLTECGAGSLDLRTMKLRETECEGLNNSLVRNYVFDATERSKAYGY 372
+S+PLVFLKQRLLFLTE GAGSLDLR+MK+RE+ECEGLN+SL R+YVFDA+ER+KAYG+
Sbjct: 277 -TSRPLVFLKQRLLFLTETGAGSLDLRSMKIRESECEGLNHSLARSYVFDASERAKAYGF 335
Query: 373 TSEGDLIHVLLLGDVTNFKCRVRSKRKFDMSEPLAFQAIKGYLLVVCEEKIFVYNVSAQH 432
TSEG++IHVLLLGD+ NFKCRVRSK+K M EP+A QAIKGYLL+V +EK+FVYNVS QH
Sbjct: 336 TSEGEIIHVLLLGDIMNFKCRVRSKKKVQMEEPVALQAIKGYLLIVNQEKVFVYNVSTQH 395
Query: 433 YVRSGGPRLLFSAGLDEIRSSFLNYQVMDVDVNDEKRRSV-PLIASDRDKXXXXXXXXXX 491
YVR+ GPRLLF A L++IRS+FL+++ + +K V PLIASDR+K
Sbjct: 396 YVRTTGPRLLFPAALEDIRSTFLSHRESTKTTDHQKLEKVTPLIASDREKLLVMGLGDGY 455
Query: 492 XXMYRSNLPVFKGESSVMSWTGPVFFFILFLFGVWHFFAKKKEALTSWGPDDPFSSTTAA 551
Y+S LP+ K E + M W+ PVFFFILFLFG WHFF+KKKE+LT+WGPDDPFSSTT +
Sbjct: 456 VATYKSKLPISKAEFNTMLWSSPVFFFILFLFGAWHFFSKKKESLTAWGPDDPFSSTTMS 515
Query: 552 TGAPIGSGAGERPFVDSSSRNADIMDLRSGGMRGPSRRYASPSRYP-GGTTSSFRP-GSA 609
+ + + F +S+ RN D MDLR RRY SPSRYP G T ++R GS
Sbjct: 516 SSSTT-TAQNSSAFSESTRRNDDHMDLR--------RRYVSPSRYPPGAATGAYRSVGSN 566
Query: 610 DTNARPPVDP-NFRS-ASELKFRG-STLESAGFPKR--SLYVNNQVVDDSN 655
D ++R PV+ N+R+ A E+K+RG S L+S GF KR SL+ NN+ +DD +
Sbjct: 567 DPSSRAPVETTNYRTTAQEMKYRGGSGLDSGGFGKRRESLFGNNKALDDES 617
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| TAIR|locus:2016497 AT1G19370 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FRK5 | Y1514_ARATH | No assigned EC number | 0.5492 | 0.9129 | 0.9692 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00014638001 | SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (651 aa) | ||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 655 | |||
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 98.03 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 97.52 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 96.6 | |
| PTZ00421 | 493 | coronin; Provisional | 95.67 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 94.05 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 93.7 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 93.49 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 92.88 | |
| PTZ00420 | 568 | coronin; Provisional | 92.35 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 91.69 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 91.66 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 91.53 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 89.96 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 89.2 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 88.88 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 87.99 | |
| PTZ00421 | 493 | coronin; Provisional | 87.62 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 87.41 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 85.98 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 85.34 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 84.77 | |
| PTZ00420 | 568 | coronin; Provisional | 84.59 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 82.81 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 80.68 |
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
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Probab=98.03 E-value=0.0079 Score=52.94 Aligned_cols=229 Identities=19% Similarity=0.223 Sum_probs=127.3
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILI 239 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~ 239 (655)
..+++|+.+-|. .+++++|...|.|+++..+ +..+..+ ..-..+|+.+.. . .+...+++|..||.|.+
T Consensus 9 ~~~i~~~~~~~~------~~~l~~~~~~g~i~i~~~~~~~~~~~~-~~~~~~i~~~~~-~---~~~~~l~~~~~~~~i~i 77 (289)
T cd00200 9 TGGVTCVAFSPD------GKLLATGSGDGTIKVWDLETGELLRTL-KGHTGPVRDVAA-S---ADGTYLASGSSDKTIRL 77 (289)
T ss_pred CCCEEEEEEcCC------CCEEEEeecCcEEEEEEeeCCCcEEEE-ecCCcceeEEEE-C---CCCCEEEEEcCCCeEEE
Confidence 467888888775 4789999999999999776 5444443 344567766432 2 45578999999999988
Q ss_pred EEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeecCceeEEEEeeCCCcEEEEeeC-CeEEEEEeccCC---
Q 035748 240 HKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKEN-GMVHGTAAMLSS--- 315 (655)
Q Consensus 240 hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrvGr~RYVlsaDasGrV~VFren-Gtl~G~aa~~~S--- 315 (655)
..+... +....+. ....+|+.+..+.- .++++++..+|.|.+|.-+ +...... ....
T Consensus 78 ~~~~~~-----------~~~~~~~-----~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~i 138 (289)
T cd00200 78 WDLETG-----------ECVRTLT-----GHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTL-RGHTDWV 138 (289)
T ss_pred EEcCcc-----------cceEEEe-----ccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEe-ccCCCcE
Confidence 776542 1122231 22236777666654 4577777789999999975 6655555 3222
Q ss_pred CceEEEee-eeeeeee-cCcc-ccccccCcccccccCCCCcccceeeeccccccceeeeeccCCcEEEEEEecCccccce
Q 035748 316 KPLVFLKQ-RLLFLTE-CGAG-SLDLRTMKLRETECEGLNNSLVRNYVFDATERSKAYGYTSEGDLIHVLLLGDVTNFKC 392 (655)
Q Consensus 316 rplaFlkQ-rllfLTe-~Gaa-slDLrtm~vr~~pCeGLN~S~i~syaFD~~~rsKaYG~T~~G~Li~v~l~gD~~~~~C 392 (655)
.-+.|-+. .+++.+. .|.. ..|+++.+....-. .....+....|++..+.-+++-. +|. |.++=. ...++
T Consensus 139 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~-~~~-i~i~d~---~~~~~ 211 (289)
T cd00200 139 NSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLT--GHTGEVNSVAFSPDGEKLLSSSS-DGT-IKLWDL---STGKC 211 (289)
T ss_pred EEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEe--cCccccceEEECCCcCEEEEecC-CCc-EEEEEC---CCCce
Confidence 23444442 4444433 3322 33666433221111 22235666777665543333333 443 233311 11111
Q ss_pred EEeeeccc-cCC-cccceeeec-eeEEEEe--cceEEEEEeec
Q 035748 393 RVRSKRKF-DMS-EPLAFQAIK-GYLLVVC--EEKIFVYNVSA 430 (655)
Q Consensus 393 rVRs~~k~-d~~-~pvalqaIK-GYlLvas--~~~V~VyNvTs 430 (655)
. ..+ ..+ +...++-.. |+++++. ...|.+||+..
T Consensus 212 ~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~ 250 (289)
T cd00200 212 L----GTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT 250 (289)
T ss_pred e----cchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCC
Confidence 1 111 112 233333332 6666665 67899999875
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| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 655 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-09 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.1 bits (142), Expect = 4e-09
Identities = 72/500 (14%), Positives = 147/500 (29%), Gaps = 140/500 (28%)
Query: 40 YHEPSETESEGEVKFGQQDLLLHKLEELVRNL--SDIVTKLESKFSGTSKVSSLDEKRNL 97
+H + E+ GE ++ +D+L + V N D+ D +++
Sbjct: 3 HHHHMDFET-GEHQYQYKDILSVFEDAFVDNFDCKDV----------------QDMPKSI 45
Query: 98 GSLRIALEEKDKIKRRKYDDEKLIKEFKEEDMIRD-GER-----VRSVSVTKYSPFWSER 151
++ EE D I K ++ F + E V V Y F
Sbjct: 46 ----LSKEEIDHIIMSKDAVSGTLRLF---WTLLSKQEEMVQKFVEEVLRINY-KFLMSP 97
Query: 152 FQFVSAVKLESDPT-----CINILPFRDYEGHSKY-VAVGDDKGRVFVFLRNGDVSVEFY 205
+ + S T + L + D + +KY V+ + + ++ LR
Sbjct: 98 IKTEQ--RQPSMMTRMYIEQRDRL-YNDNQVFAKYNVS----RLQPYLKLRQA------- 143
Query: 206 TMSELPVTAMVSYVSVY------KNESVLVTGHENGVILIHKVYEK-PNGEDWSSLVIEN 258
+ EL V + K + + V L +KV K W + N
Sbjct: 144 -LLELRPA---KNVLIDGVLGSGK--TWVA----LDVCLSYKVQCKMDFKIFW----L-N 188
Query: 259 VGKYVATENGEEGLSVTLLEVHHIGRMRYILSADASGKIRVFKENGMVHGTAAMLSSKPL 318
+ N E + L ++ + + +D S I++ + + ++
Sbjct: 189 LKNC----NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS---------IQAELR 235
Query: 319 VFLKQR-----LLFL-----TECGAGSLDLRTMKLRETECEGLNNSLVRNYVFDATERSK 368
LK + LL L + + +L L T + + + L +
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKA-WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 369 AYGYT---SEGDLIHVLLLGDVTNFKCRVRSKRKFDMSEPLAFQAIKGYLLVV--CEEKI 423
+ T + LL + + + L + + + E I
Sbjct: 295 SMTLTPDEVKS------LLLKYLDCRP-----------QDLPREVLTTNPRRLSIIAESI 337
Query: 424 FVYNVSAQHYVRSGGPRL--LFSAGLD-----EIRSSFLNYQVMDVDVN----------- 465
+ ++ +L + + L+ E R F V +
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397
Query: 466 DEKRRSVPLIASD-RDKLLV 484
D + V ++ + LV
Sbjct: 398 DVIKSDVMVVVNKLHKYSLV 417
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 655 | |||
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 98.51 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 98.43 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 98.35 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 98.19 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 98.16 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 98.13 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 98.08 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 98.06 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 98.05 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 98.01 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 98.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 98.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 97.98 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 97.92 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 97.92 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 97.9 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 97.84 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 97.83 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 97.79 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 97.77 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 97.76 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 97.75 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 97.74 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 97.73 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 97.73 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 97.71 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 97.71 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 97.7 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 97.7 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 97.68 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 97.67 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.66 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 97.65 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 97.63 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 97.62 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 97.62 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 97.62 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 97.62 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 97.61 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 97.55 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 97.49 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 97.46 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 97.46 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 97.46 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 97.46 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 97.45 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 97.43 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 97.42 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 97.41 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 97.39 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 97.36 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 97.35 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 97.33 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 97.33 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 97.32 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 97.3 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 97.3 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 97.28 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 97.27 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 97.25 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 97.24 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 97.22 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 97.21 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 97.2 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 97.17 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 97.16 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 97.14 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 97.08 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 97.05 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 97.05 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 97.04 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 97.02 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 96.92 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 96.91 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 96.89 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 96.86 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 96.82 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 96.82 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 96.75 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 96.72 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 96.69 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 96.68 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 96.68 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 96.67 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 96.66 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 96.65 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 96.63 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 96.62 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 96.59 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 96.58 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 96.56 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 96.55 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 96.3 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 96.23 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 96.2 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 96.2 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 96.18 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 96.12 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 96.07 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 96.01 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 95.99 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 95.96 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 95.76 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 95.63 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 95.63 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 95.6 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 95.4 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 95.37 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 95.22 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 95.03 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 94.86 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 94.82 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 94.8 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 94.69 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 94.59 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 94.43 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 94.11 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 94.07 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 94.04 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 94.02 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 93.8 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 93.01 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 92.61 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 92.45 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 92.17 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 92.01 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 91.81 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 91.45 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 90.47 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 90.37 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 89.84 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 88.38 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 87.86 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 87.27 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 86.52 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 85.73 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 85.72 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 82.69 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 81.67 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 81.5 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 80.73 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 80.02 |
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=98.51 E-value=0.00017 Score=67.43 Aligned_cols=248 Identities=13% Similarity=0.112 Sum_probs=136.8
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-Cc------eEEEEecCCCCCeeEEEEeeeeecc----e---e
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GD------VSVEFYTMSELPVTAMVSYVSVYKN----E---S 226 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GD------vl~E~~T~~~spVTAm~SYlsvrRN----e---T 226 (655)
...|+|+..-| +++|+|...|.|.+++.+ +. .+..+. .-..+|++| ++. .+ . .
T Consensus 16 ~~~i~~~~~~~--------~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~h~~~v~~~-~~~---~~~~~~g~~~~ 82 (397)
T 1sq9_A 16 DADIFSVSACN--------SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF-VHKSGLHHV-DVL---QAIERDAFELC 82 (397)
T ss_dssp SSCEEEEEECS--------SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE-CCTTCEEEE-EEE---EEEETTTEEEE
T ss_pred hcCeEEEEecC--------CeEEEEcCCCEEEEEECCCcccccCCCcceEEe-cCCCcEEEE-EEe---cccccCCcccc
Confidence 56788888865 699999999999999777 55 455555 457889984 432 34 6 8
Q ss_pred EEEeeecCceEEEEEEEecCCCCCcchhhhhhccccccccCCCCCCceEEEEEeec--CceeE-EEEeeCCCcEEEEeeC
Q 035748 227 VLVTGHENGVILIHKVYEKPNGEDWSSLVIENVGKYVATENGEEGLSVTLLEVHHI--GRMRY-ILSADASGKIRVFKEN 303 (655)
Q Consensus 227 ~lVTGHadG~V~~hrV~Es~~gdD~~sLs~e~~r~~~~~e~~~d~~pVt~LE~hrv--Gr~RY-VlsaDasGrV~VFren 303 (655)
+|++|..||.|.+..+........ . ..+.+..........+|+.+.++.. ...++ ++++..+|.|.+|.-.
T Consensus 83 ~l~s~~~dg~i~iw~~~~~~~~~~---~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 156 (397)
T 1sq9_A 83 LVATTSFSGDLLFYRITREDETKK---V---IFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFH 156 (397)
T ss_dssp EEEEEETTSCEEEEEEEECTTTCC---E---EEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEE
T ss_pred EEEEEcCCCCEEEEEccCCccccc---c---cceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCC
Confidence 999999999999888776211000 0 0112210000000468899888733 45567 9999999999999875
Q ss_pred C----------------eEEE-----EEeccCCCceEEEeeeeeeeeecCccc---cccccCcc-ccccc---CCCCccc
Q 035748 304 G----------------MVHG-----TAAMLSSKPLVFLKQRLLFLTECGAGS---LDLRTMKL-RETEC---EGLNNSL 355 (655)
Q Consensus 304 G----------------tl~G-----~aa~~~SrplaFlkQrllfLTe~Gaas---lDLrtm~v-r~~pC---eGLN~S~ 355 (655)
. ++.+ ........-++|-... ++++...-+. .|+++.+. ....+ +..+...
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~ 235 (397)
T 1sq9_A 157 PFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS 235 (397)
T ss_dssp SSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCC
T ss_pred ccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCc
Confidence 4 4433 1101223456666555 5554433332 37766432 22333 2223566
Q ss_pred ceeeeccccccceeeeeccCC-cEEEEEEecCccccceEEeeecc----------ccCCcc-cceee--eceeEEEEec-
Q 035748 356 VRNYVFDATERSKAYGYTSEG-DLIHVLLLGDVTNFKCRVRSKRK----------FDMSEP-LAFQA--IKGYLLVVCE- 420 (655)
Q Consensus 356 i~syaFD~~~rsKaYG~T~~G-~Li~v~l~gD~~~~~CrVRs~~k----------~d~~~p-valqa--IKGYlLvas~- 420 (655)
+.+.+|++...--+.|-.+.+ ..|.+| |....+|...-... +....+ .+++- -..||+.++.
T Consensus 236 i~~i~~~~~~~~l~~~~~d~~~g~i~i~---d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 312 (397)
T 1sq9_A 236 IRSVKFSPQGSLLAIAHDSNSFGCITLY---ETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD 312 (397)
T ss_dssp EEEEEECSSTTEEEEEEEETTEEEEEEE---ETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT
T ss_pred cceEEECCCCCEEEEEecCCCCceEEEE---ECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCC
Confidence 788888776544333332211 234444 22222332222110 002222 22222 2346666665
Q ss_pred ceEEEEEeece
Q 035748 421 EKIFVYNVSAQ 431 (655)
Q Consensus 421 ~~V~VyNvTsq 431 (655)
..|.+||+.+.
T Consensus 313 g~i~iwd~~~~ 323 (397)
T 1sq9_A 313 GKLRFWDVKTK 323 (397)
T ss_dssp SEEEEEETTTT
T ss_pred CeEEEEEcCCC
Confidence 46999998763
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 655 | |||
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 97.76 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 97.76 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 97.69 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 97.58 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 97.47 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 97.36 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 96.99 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 96.95 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 96.93 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 96.81 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 96.59 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 96.58 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 96.55 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 96.45 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 96.43 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 96.41 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 96.37 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 96.37 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 96.36 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 96.28 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 95.86 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 95.74 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 95.59 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 95.44 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 93.97 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 92.17 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 91.64 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 91.59 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 90.23 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 85.61 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 85.45 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 84.91 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 83.83 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.76 E-value=0.0061 Score=52.03 Aligned_cols=245 Identities=11% Similarity=0.049 Sum_probs=129.1
Q ss_pred CCccceeeeccCCCCCCcceeEEeecccceEEEEccC-CceEEEEecCCCCCeeEEEEeeeeecceeEEEeeecCceEEE
Q 035748 161 ESDPTCINILPFRDYEGHSKYVAVGDDKGRVFVFLRN-GDVSVEFYTMSELPVTAMVSYVSVYKNESVLVTGHENGVILI 239 (655)
Q Consensus 161 da~aTal~vLP~r~~~glskY~AVGD~~Grv~Vfs~~-GDvl~E~~T~~~spVTAm~SYlsvrRNeT~lVTGHadG~V~~ 239 (655)
...|+|+..-|. .+|+|+|...|.|.|++.. |..+..+... ..+|+++ ++. .+...+++|..||.|.+
T Consensus 55 ~~~I~~l~~s~~------~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~-~~~v~~v-~~~---~~~~~l~~~~~d~~i~~ 123 (340)
T d1tbga_ 55 LAKIYAMHWGTD------SRLLVSASQDGKLIIWDSYTTNKVHAIPLR-SSWVMTC-AYA---PSGNYVACGGLDNICSI 123 (340)
T ss_dssp SSCEEEEEECTT------SSEEEEEETTTEEEEEETTTTEEEEEEECS-CSCEEEE-EEC---TTSSEEEEEETTCCEEE
T ss_pred CCCEEEEEECCC------CCEEEEEECCCceeeeecccceeEEEEecc-cccEEee-Eee---ccceeeeeecccceeec
Confidence 466888887763 2699999999999999765 8877766543 6799984 543 58889999999999988
Q ss_pred EEEEecCCCCC-cchhh---------h-hhccccc------------------cccCCCCCCceEEEEEeecCceeEEEE
Q 035748 240 HKVYEKPNGED-WSSLV---------I-ENVGKYV------------------ATENGEEGLSVTLLEVHHIGRMRYILS 290 (655)
Q Consensus 240 hrV~Es~~gdD-~~sLs---------~-e~~r~~~------------------~~e~~~d~~pVt~LE~hrvGr~RYVls 290 (655)
..+........ ...+. . .....+. ..........|.. ........++++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 201 (340)
T d1tbga_ 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMS--LSLAPDTRLFVS 201 (340)
T ss_dssp EESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEE--EEECTTSSEEEE
T ss_pred ccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEee--eccccccceeEE
Confidence 76543110000 00000 0 0000000 0001122333444 233445668899
Q ss_pred eeCCCcEEEEee-CCeEEEEEeccCCCc---eEEEeeeeeeee--ecCcc-ccccccCcccccccCCCCcccceeeeccc
Q 035748 291 ADASGKIRVFKE-NGMVHGTAAMLSSKP---LVFLKQRLLFLT--ECGAG-SLDLRTMKLRETECEGLNNSLVRNYVFDA 363 (655)
Q Consensus 291 aDasGrV~VFre-nGtl~G~aa~~~Srp---laFlkQrllfLT--e~Gaa-slDLrtm~vr~~pCeGLN~S~i~syaFD~ 363 (655)
+..+|.|.+|.- ++..--++ .....+ ++|-...-+++| .-|.- ..|+++......-........+.+.+|++
T Consensus 202 ~~~d~~v~i~d~~~~~~~~~~-~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 280 (340)
T d1tbga_ 202 GACDASAKLWDVREGMCRQTF-TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK 280 (340)
T ss_dssp EETTTEEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECS
T ss_pred eecCceEEEEECCCCcEEEEE-eCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECC
Confidence 999999999985 57666666 433344 344332222333 22322 23666655433222222334466677776
Q ss_pred cccceeeeeccCCcEEEEEEecCccccceEEeeeccccCCccc-ceeee--ceeEEEEec-ceEEEEE
Q 035748 364 TERSKAYGYTSEGDLIHVLLLGDVTNFKCRVRSKRKFDMSEPL-AFQAI--KGYLLVVCE-EKIFVYN 427 (655)
Q Consensus 364 ~~rsKaYG~T~~G~Li~v~l~gD~~~~~CrVRs~~k~d~~~pv-alqaI--KGYlLvas~-~~V~VyN 427 (655)
..+-=+.| +.+|. |++| |....+|.-.-.. +..+| +++-- .-||+.++. ..|.|||
T Consensus 281 ~~~~l~~g-~~dg~-i~iw---d~~~~~~~~~~~~---H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 281 SGRLLLAG-YDDFN-CNVW---DALKADRAGVLAG---HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SSCEEEEE-ETTSC-EEEE---ETTTCCEEEEECC---CSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCEEEEE-ECCCE-EEEE---ECCCCcEEEEEcC---CCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 55433322 23333 3333 3333333322111 22222 22211 236666665 4577776
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|