Citrus Sinensis ID: 035756

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180------
Protein Sequence
MDAKSLNSFHGGTSSSYRGVRKRKWGKWVSEIREPGTKSRIWLGSFETAEMAAAAYDVAALHFRGREARLNFPELVTSLPKPASSNAEDIRMAAHEAALRLRNTSAGSTSEEAGGGSTSGGSSLGPVTVRLSPSQIQAINDSTMDSPKMWMDQMAEELMLEQNMMFSNEFEGDEWNDMQSDSLWDP
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEcccccEEEEEEcccccccEEccccccHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccEEEEEEEcccccEEEEEEccccccEEEEcccccHHHHHHHHHHHHHHHHccccEEcccccHHcccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHcccHHHHHHHHccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mdakslnsfhggtsssyrgvrkrkwgkwvseirepgtksriwlgSFETAEMAAAAYDVAALHFrgrearlnfpelvtslpkpassnaEDIRMAAHEAALRLRntsagstseeagggstsggsslgpvtvrlspsqiqaindstmdspKMWMDQMAEELMLEQNMMfsnefegdewndmqsdslwdp
Flexible Loop (DISEMBL)
mdakslnsfhggtsssyrgvrkrkwgkwvseirepgtksriwLGSFETAEMAAAAYDVAALHFRGREARLNFPELVTslpkpassnaEDIRMAAHEAALRLRNTsagstseeagggstsggsslgpVTVRLSPSQIQAINDSTMDSPKMWMDQMAEELMLEQNMMFSNEFEGDEWNDMQSDSLWDP
Low Complexity Region (SEG)
MDAKSLNSFHGGTSSSYRGVRKRKWGKWVSEIREPGTKSRIWLGSFETaemaaaaydvaaLHFRGREARLNFPELVTSLPKPASSNAEDIRMAAHEAALRLRNtsagstseeagggstsggssLGPVTVRLSPSQIQAINDSTMDSPKMWMDQMAEELMLEQNMMFSNEFEGDEWNDMQSDSLWDP
Disordered region (IsUnstruct)
*******************VRKRKWGKWVSEIREPGTKSRIWLGSFETAEMAAAAYDVAALHFRGREARLNFPELV**************************************************************************************************************
Disordered Region (DISOPRED)
******************GVRKRKWGKWVSEIREPGTKSRIWLGSFETAEMAAAAYDVAALHFRGREARLNFPELVTS**************AAH***********************************************TMDSPKMWMDQMAEELMLEQNMMFSNEFEGDEWNDMQSDSLWDP
Disordered Region (DISEMBL)
***********************KWGKWVSEIREPGTKSRIWLGSFETAEMAAAAYDVAALHFRGREARLNFPELVTSLPKPASSNAEDIRMAAHEAALRLR*******************SSLGPVTVRLSPSQIQAINDSTMDSPKMWMDQMAEELMLEQNMMFSNEFEGDEWNDMQSDSLWDP
Disordered Region (DISPRO)
***********GTSSSYRGVRKRKWGKWVSEIREPGTKSRIWLGSFETAEMAAAAYDVAALHFRGREARLNFPELVTSLPKPASSNAEDIRMAAHEAALRL**********************************IQAINDSTMDSPKMWMDQMAEELMLEQNMMFS*******************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDAKSLNSFHGGTSSSYRGVRKRKWGKWVSEIREPGTKSRIWLGSFETAEMAAAAYDVAALHFRGREARLNFPELVTSLPKPASSNAEDIRMAAHEAALRLRNTSAGSTSEEAGGGSTSGGSSLGPVTVRLSPSQIQAINDSTMDSPKMWMDQMAEELMLEQNMMFSNEFEGDEWNDMQSDSLWDP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	186	2.2.26 [Sep-21-2011]
Q9C9I2	183	Ethylene-responsive trans	yes	no	0.887	0.901	0.6	9e-52
Q9LQ28	184	Ethylene-responsive trans	no	no	0.865	0.875	0.529	2e-34
Q9M080	221	Ethylene-responsive trans	no	no	0.483	0.407	0.622	4e-25
Q1ECI2	192	Ethylene-responsive trans	no	no	0.478	0.463	0.581	2e-24
Q39127	218	Ethylene-responsive trans	no	no	0.467	0.399	0.620	2e-24
Q8LBQ7	295	Ethylene-responsive trans	no	no	0.478	0.301	0.595	2e-24
Q9LYD3	236	Dehydration-responsive el	no	no	0.467	0.368	0.632	2e-24
Q9ZQP3	194	Ethylene-responsive trans	no	no	0.408	0.391	0.671	2e-24
Q9SUK8	179	Ethylene-responsive trans	no	no	0.408	0.424	0.657	1e-23
Q9LU18	236	Ethylene-responsive trans	no	no	0.403	0.317	0.653	5e-23

>sp|Q9C9I2|ERF21_ARATH Ethylene-responsive transcription factor ERF021 OS=Arabidopsis thaliana GN=ERF021 PE=2 SV=1

 Score =  202 bits (515), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 105/175 (60%), Positives = 123/175 (70%), Gaps = 10/175 (5%)

Query: 12  GTSSSYRGVRKRKWGKWVSEIREPGTKSRIWLGSFETAEMAAAAYDVAALHFRGREARLN 71
           G  S+YRGVRKRKWGKWVSEIREPGTK+RIWLGSFET EMAA AYDVAA HFRGREARLN
Sbjct: 19  GVPSAYRGVRKRKWGKWVSEIREPGTKNRIWLGSFETPEMAATAYDVAAFHFRGREARLN 78

Query: 72  FPELVTSLPKPASSNAEDIRMAAHEAALRLRNTSAGSTSEEAGGGSTSGGSSLGPVTVRL 131
           FPEL +SLP+PA S+++ IRMA HEA L  R T     +E A    +S  S++ P  VRL
Sbjct: 79  FPELASSLPRPADSSSDSIRMAVHEATL-CRTTEG---TESAMQVDSSSSSNVAPTMVRL 134

Query: 132 SPSQIQAINDSTMDSPKMWMDQMAEELMLEQNMMFSNEFEGDEWNDMQSDSLWDP 186
           SP +IQAIN+ST+ SP   M    +       M F+N+ E + W   QSD LWDP
Sbjct: 135 SPREIQAINESTLGSPTTMMHSTYDP------MEFANDVEMNAWETYQSDFLWDP 183

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQ28|ERF22_ARATH Ethylene-responsive transcription factor ERF022 OS=Arabidopsis thaliana GN=ERF022 PE=2 SV=1

 Score =  145 bits (365), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/172 (52%), Positives = 114/172 (66%), Gaps = 11/172 (6%)

Query: 16  SYRGVRKRKWGKWVSEIREPGTKSRIWLGSFETAEMAAAAYDVAALHFRGREARLNFPEL 75
           SYRG+R+RKWGKWVSEIREPG K+RIWLGS+ETAEMAAAAYD AALH RGR   LNFPEL
Sbjct: 19  SYRGIRRRKWGKWVSEIREPGKKTRIWLGSYETAEMAAAAYDAAALHLRGRGTNLNFPEL 78

Query: 76  VTSLPKPASSNAEDIRMAAHEAALRLRNTSAGSTSEEAGGGSTSGGSSLGPVTVRLSPSQ 135
           V S P+P SS++E I+ AA +AAL  +       + E+G G +  G         LSP Q
Sbjct: 79  VDSFPRPESSSSEHIQAAAQDAALMFKPGRLSEPALESGQGLSRVG---------LSPDQ 129

Query: 136 IQAINDSTMDSPKM-WMDQMAEELMLEQNMMFSNEFEGDEWNDMQS-DSLWD 185
           IQAIN+S +DSP+M WM  +      E    F  + + DE+ +MQ   S+W+
Sbjct: 130 IQAINESPLDSPRMGWMQDLEVADYEELYGQFFGQHDRDEFFEMQQFQSIWN 181

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M080|ERF43_ARATH Ethylene-responsive transcription factor ERF043 OS=Arabidopsis thaliana GN=ERF043 PE=2 SV=1

 Score =  114 bits (285), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 56/90 (62%), Positives = 66/90 (73%)

Query: 17  YRGVRKRKWGKWVSEIREPGTKSRIWLGSFETAEMAAAAYDVAALHFRGREARLNFPELV 76
           YRGVR R WGKWVSEIREP  KSRIWLG+F TAEMA  A+DVAA+  +G  A LNFPEL 
Sbjct: 19  YRGVRMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAMRAHDVAAMSIKGTSAILNFPELS 78

Query: 77  TSLPKPASSNAEDIRMAAHEAALRLRNTSA 106
             LP+P S +  D+R AA +AAL   +T+A
Sbjct: 79  KLLPRPVSLSPRDVRAAATKAALMDFDTTA 108

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q1ECI2|ERF23_ARATH Ethylene-responsive transcription factor ERF023 OS=Arabidopsis thaliana GN=ERF023 PE=2 SV=1

 Score =  112 bits (280), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/98 (58%), Positives = 68/98 (69%), Gaps = 9/98 (9%)

Query: 3   AKSLNSFHGG---TSSS------YRGVRKRKWGKWVSEIREPGTKSRIWLGSFETAEMAA 53
           A ++ S  GG   TSSS      Y GVRKR+WGKWVSEIREP  KSRIWLGSF   EMAA
Sbjct: 22  ASAVKSCGGGGKETSSSTTRHPVYHGVRKRRWGKWVSEIREPRKKSRIWLGSFPVPEMAA 81

Query: 54  AAYDVAALHFRGREARLNFPELVTSLPKPASSNAEDIR 91
            AYDVAA   +GR+A+LNFPE +  LP+P++    DI+
Sbjct: 82  KAYDVAAFCLKGRKAQLNFPEEIEDLPRPSTCTPRDIQ 119

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39127|TINY_ARATH Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana GN=TINY PE=2 SV=1

 Score =  112 bits (279), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/87 (62%), Positives = 65/87 (74%)

Query: 12  GTSSSYRGVRKRKWGKWVSEIREPGTKSRIWLGSFETAEMAAAAYDVAALHFRGREARLN 71
           G    YRGVRKR WGKWVSEIREP  KSRIWLG+F + EMAA A+DVAAL  +G  A LN
Sbjct: 31  GKHPVYRGVRKRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKGASAILN 90

Query: 72  FPELVTSLPKPASSNAEDIRMAAHEAA 98
           FP+L  S P+P+S +  DI++AA +AA
Sbjct: 91  FPDLAGSFPRPSSLSPRDIQVAALKAA 117

Putative transcriptional activator.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LBQ7|ERF34_ARATH Ethylene-responsive transcription factor ERF034 OS=Arabidopsis thaliana GN=ERF034 PE=2 SV=2

 Score =  112 bits (279), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/89 (59%), Positives = 66/89 (74%)

Query: 11  GGTSSSYRGVRKRKWGKWVSEIREPGTKSRIWLGSFETAEMAAAAYDVAALHFRGREARL 70
           G    +YRGVR R WGKWVSEIREP  KSRIWLG++ TAEMAA A+DVAAL  +G  A L
Sbjct: 94  GDKHPTYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGTTAYL 153

Query: 71  NFPELVTSLPKPASSNAEDIRMAAHEAAL 99
           NFP+L   LP+P +++ +DI+ AA  AA+
Sbjct: 154 NFPKLAGELPRPVTNSPKDIQAAASLAAV 182

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYD3|DREB3_ARATH Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB3 PE=2 SV=1

 Score =  112 bits (279), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 62/87 (71%)

Query: 12  GTSSSYRGVRKRKWGKWVSEIREPGTKSRIWLGSFETAEMAAAAYDVAALHFRGREARLN 71
           G    YRGVR R WGKWVSEIREP  KSRIWLG+F T EMAA A+DVAAL  +G  A LN
Sbjct: 46  GKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGTAAILN 105

Query: 72  FPELVTSLPKPASSNAEDIRMAAHEAA 98
           FPEL  S P+P S +  DI+ AA +AA
Sbjct: 106 FPELADSFPRPVSLSPRDIQTAALKAA 132

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQP3|ERF38_ARATH Ethylene-responsive transcription factor ERF038 OS=Arabidopsis thaliana GN=ERF038 PE=2 SV=1

 Score =  111 bits (278), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/76 (67%), Positives = 62/76 (81%)

Query: 16  SYRGVRKRKWGKWVSEIREPGTKSRIWLGSFETAEMAAAAYDVAALHFRGREARLNFPEL 75
           ++RGVR R+WGKWVSEIREP  KSRIWLG+F TAEMAA A+DVAAL  +G  A LNFPEL
Sbjct: 44  NFRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTAEMAARAHDVAALAIKGGSAHLNFPEL 103

Query: 76  VTSLPKPASSNAEDIR 91
              LP+PAS++ +DI+
Sbjct: 104 AYHLPRPASADPKDIQ 119

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUK8|ERF39_ARATH Ethylene-responsive transcription factor ERF039 OS=Arabidopsis thaliana GN=ERF039 PE=2 SV=1

 Score =  108 bits (271), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 50/76 (65%), Positives = 61/76 (80%)

Query: 16  SYRGVRKRKWGKWVSEIREPGTKSRIWLGSFETAEMAAAAYDVAALHFRGREARLNFPEL 75
           ++RGVR R+WGKWVSEIREP  KSRIWLG+F T EMAA A+DVAAL  +G  A LNFPEL
Sbjct: 39  NFRGVRMRQWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALAIKGGSAHLNFPEL 98

Query: 76  VTSLPKPASSNAEDIR 91
              LP+PAS++ +DI+
Sbjct: 99  AYHLPRPASADPKDIQ 114

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LU18|ERF36_ARATH Ethylene-responsive transcription factor ERF036 OS=Arabidopsis thaliana GN=ERF036 PE=2 SV=2

 Score =  107 bits (267), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 49/75 (65%), Positives = 59/75 (78%)

Query: 17  YRGVRKRKWGKWVSEIREPGTKSRIWLGSFETAEMAAAAYDVAALHFRGREARLNFPELV 76
           YRGVR R WGKWVSEIR+P  K+RIWLG+F TA+MAA A+DVAAL  +G  A LNFPEL 
Sbjct: 61  YRGVRMRSWGKWVSEIRQPRKKTRIWLGTFVTADMAARAHDVAALTIKGSSAVLNFPELA 120

Query: 77  TSLPKPASSNAEDIR 91
           +  P+PASS+  DI+
Sbjct: 121 SLFPRPASSSPHDIQ 135

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	186
449447759	192	PREDICTED: ethylene-responsive transcrip	0.946	0.916	0.641	2e-60
224136107	180	AP2/ERF domain-containing transcription	0.913	0.944	0.675	1e-59
255587007	215	DNA binding protein, putative [Ricinus c	0.967	0.837	0.652	3e-58
356540377	185	PREDICTED: ethylene-responsive transcrip	0.973	0.978	0.657	5e-58
224145079	175	AP2/ERF domain-containing transcription	0.908	0.965	0.704	2e-57
356495764	186	PREDICTED: ethylene-responsive transcrip	0.973	0.973	0.649	5e-55
357481281	187	Ethylene-responsive transcription factor	0.908	0.903	0.691	1e-54
224059062	180	AP2/ERF domain-containing transcription	0.962	0.994	0.641	5e-53
15217490	183	ethylene-responsive transcription factor	0.887	0.901	0.6	4e-50
297838985	183	hypothetical protein ARALYDRAFT_476276 [	0.887	0.901	0.6	3e-49

>gi|449447759|ref|XP_004141635.1| PREDICTED: ethylene-responsive transcription factor ERF021-like [Cucumis sativus] gi|449482331|ref|XP_004156249.1| PREDICTED: ethylene-responsive transcription factor ERF021-like [Cucumis sativus]

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 118/184 (64%), Positives = 137/184 (74%), Gaps = 8/184 (4%)

Query: 10  HGGTSSSYRGVRKRKWGKWVSEIREPGTKSRIWLGSFETAEMAAAAYDVAALHFRGREAR 69
           HG  +SSYRGVRKRKWGKWVSEIREPG K+RIWLGSFET EMAA AYDVAA HFRGR+AR
Sbjct: 10  HGAATSSYRGVRKRKWGKWVSEIREPGKKTRIWLGSFETPEMAATAYDVAAYHFRGRDAR 69

Query: 70  LNFPELVTSLPKPASSNAEDIRMAAHEAALRLRNTSAGSTSEEAGGGSTSGGSSLGPVTV 129
           LNFP LV SLP P SS  +DIR+AAHEAALR+R T   ++S++  G  TS    L PVTV
Sbjct: 70  LNFPHLVNSLPFPLSSTPDDIRLAAHEAALRVRTTPVVASSDDQLGDETS-TLGLAPVTV 128

Query: 130 RLSPSQIQAINDSTMDSPKMWMDQMAEELMLEQNMMFSNEFEGDE-------WNDMQSDS 182
           RLSPSQIQAIN+ST+DSPKMWM   +E L+++Q     N F   +       W +M +DS
Sbjct: 129 RLSPSQIQAINESTLDSPKMWMQMSSESLLMDQEFSNGNVFVDHDMQDYDQMWENMHNDS 188

Query: 183 LWDP 186
           LWDP
Sbjct: 189 LWDP 192

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136107|ref|XP_002327382.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222835752|gb|EEE74187.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  234 bits (597), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 121/179 (67%), Positives = 146/179 (81%), Gaps = 9/179 (5%)

Query: 10  HGGTSSSYRGVRKRKWGKWVSEIREPGTKSRIWLGSFETAEMAAAAYDVAALHFRGREAR 69
           HGG SSSYRGVRKRKWGKWVSEIREPG KSRIWLGSFET EMAA AYDVAALHFRG +A+
Sbjct: 9   HGGMSSSYRGVRKRKWGKWVSEIREPGKKSRIWLGSFETPEMAATAYDVAALHFRGYDAK 68

Query: 70  LNFPELVTSLPKPASSNAEDIRMAAHEAALRLRNTSAGSTSEEAGGGSTSGGSSLGPVTV 129
           LNFP+LV SLPKPASS+AEDIR+AAHEAA+ LR ++  S+         S  S++GP+TV
Sbjct: 69  LNFPDLVHSLPKPASSDAEDIRIAAHEAAMSLRPSTVESSQ------GGSSSSNVGPITV 122

Query: 130 RLSPSQIQAINDSTMDSPKMWMDQMAEELMLEQNMMFS--NEFEGDEWNDMQSDSLWDP 186
           RLSPSQIQAIN+S +DSPKMWM QM+   M +++M++S  +  E +EW++ Q+DSLWDP
Sbjct: 123 RLSPSQIQAINESPLDSPKMWM-QMSGIAMPDESMIYSSIDVGEEEEWDNKQTDSLWDP 180

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587007|ref|XP_002534096.1| DNA binding protein, putative [Ricinus communis] gi|223525855|gb|EEF28287.1| DNA binding protein, putative [Ricinus communis]

 Score =  229 bits (584), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 126/193 (65%), Positives = 148/193 (76%), Gaps = 13/193 (6%)

Query: 1   MDAKSLNSFHGGTSSSYRGVRKRKWGKWVSEIREPGTKSRIWLGSFETAEMAAAAYDVAA 60
           M  ++ ++ HGGTSS YRGVRKRKWGKWVSEIREPG K+RIWLGSFET EMAA AYDVAA
Sbjct: 27  MQEQTSSNHHGGTSSCYRGVRKRKWGKWVSEIREPGKKTRIWLGSFETPEMAATAYDVAA 86

Query: 61  LHFRGREARLNFPELVTSLPKPASSNAEDIRMAAHEAALRLRNT------SAGSTSEEAG 114
           L+FRGREA+LNFP LV  LP PAS NA+DIRMAAHEAALRLR+        +        
Sbjct: 87  LYFRGREAKLNFPHLVHDLPNPASPNADDIRMAAHEAALRLRSLPIPEREGSNGGGGGGS 146

Query: 115 GGSTSGGSSLGPVTVRLSPSQIQAINDSTMDSPKMWMDQMAEELMLEQNMMFSNEFEG-- 172
           GGS S  S +GP+TVRLSP +IQAIN+S +DSPKMWM QMA    +E +MMF+N+ +G  
Sbjct: 147 GGSGSSSSVVGPITVRLSPREIQAINESPLDSPKMWM-QMAT---MEDSMMFAND-DGVD 201

Query: 173 DEWNDMQSDSLWD 185
           DEW+ MQ+DSLWD
Sbjct: 202 DEWDSMQNDSLWD 214

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540377|ref|XP_003538666.1| PREDICTED: ethylene-responsive transcription factor ERF021-like [Glycine max]

 Score =  229 bits (583), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 125/190 (65%), Positives = 146/190 (76%), Gaps = 9/190 (4%)

Query: 1   MDAKSLNSFH--GGTSSSYRGVRKRKWGKWVSEIREPGTKSRIWLGSFETAEMAAAAYDV 58
           MD  S +S H  G  SS+YRGVRKRKWGKWVSEIREPGTK+RIWLGSFET EMAAAAYDV
Sbjct: 1   MDMPSSSSSHVVGAASSAYRGVRKRKWGKWVSEIREPGTKTRIWLGSFETPEMAAAAYDV 60

Query: 59  AALHFRGREARLNFPELVTSLPKPASSNAEDIRMAAHEAALRLRNTSAGSTSEEAGGGST 118
           AALHFRGR+ARLNFPEL ++LP+P S+NA+ IRMAAHEAALRLR   A   +       +
Sbjct: 61  AALHFRGRDARLNFPELASTLPRPVSNNADHIRMAAHEAALRLRTNPAAPNTV-----GS 115

Query: 119 SGGSSLGPVTVRLSPSQIQAINDSTMDSPKMWMDQMAEELMLEQNMMFSN--EFEGDEWN 176
           +G  S  P+TVRLSP+QIQAINDS MDSP+ WM      +M +Q+MMF+N   FE +EW 
Sbjct: 116 AGSVSAAPLTVRLSPTQIQAINDSPMDSPQTWMQMPDTFMMHDQSMMFANGYSFEDNEWE 175

Query: 177 DMQSDSLWDP 186
           DM +DSLWDP
Sbjct: 176 DMHNDSLWDP 185

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145079|ref|XP_002325519.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222862394|gb|EEE99900.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  227 bits (578), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 124/176 (70%), Positives = 146/176 (82%), Gaps = 7/176 (3%)

Query: 11  GGTSSSYRGVRKRKWGKWVSEIREPGTKSRIWLGSFETAEMAAAAYDVAALHFRGREARL 70
           GG SSSYRGVRKRKWGKWVSEIREPG K+RIWLGSFET EMAAAAYDVAALHFRG +AR+
Sbjct: 7   GGVSSSYRGVRKRKWGKWVSEIREPGKKNRIWLGSFETPEMAAAAYDVAALHFRGHDARV 66

Query: 71  NFPELVTSLPKPASSNAEDIRMAAHEAALRLRNTSAGSTSEEAGGGSTSGGSSLGPVTVR 130
           NFP+LV  LPKP SS++EDIRMAAHEAA+ LR  +A S+    GG ST   S++GP+TVR
Sbjct: 67  NFPDLVHDLPKPTSSSSEDIRMAAHEAAMSLRPFTAESSH---GGSST---SNVGPITVR 120

Query: 131 LSPSQIQAINDSTMDSPKMWMDQMAEELMLEQNMMFSNEFEGDEWNDMQSDSLWDP 186
           LS SQIQAIN+S +DSPKMWM  M+E  +LE++M+FSN  E DEW++ Q+ SLWDP
Sbjct: 121 LSASQIQAINESPLDSPKMWM-HMSEIAILEESMVFSNNIEEDEWDNKQTYSLWDP 175

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495764|ref|XP_003516743.1| PREDICTED: ethylene-responsive transcription factor ERF021-like [Glycine max]

 Score =  219 bits (557), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 124/191 (64%), Positives = 147/191 (76%), Gaps = 10/191 (5%)

Query: 1   MDAKSLNSFH--GGTSSSYRGVRKRKWGKWVSEIREPGTKSRIWLGSFETAEMAAAAYDV 58
           MD  S +S H  G  SS+YRGVRKRKWGKWVSEIREPGTK+RIWLGSFET EMAAAAYDV
Sbjct: 1   MDMPSSSSSHVVGAASSAYRGVRKRKWGKWVSEIREPGTKTRIWLGSFETPEMAAAAYDV 60

Query: 59  AALHFRGREARLNFPELVTSLPKPASSNAEDIRMAAHEAALRLRNTSAGSTSEEAGGGST 118
           AALHFRGR+ARLNFPEL ++LP+P S+NA+ IRMAAH+AALRLR   A   +  + G S+
Sbjct: 61  AALHFRGRDARLNFPELASTLPRPVSNNADHIRMAAHQAALRLRTNPAAPDTAGSAGSSS 120

Query: 119 SGGSSLGPVTVRLSPSQIQAINDSTMDSPKMWMDQMAEELMLEQNMMFSNE---FEGDEW 175
           S      P+TVRLSP+QIQAINDS MDSP+ WM      +M +Q+MMF++    FE +EW
Sbjct: 121 S-----APLTVRLSPTQIQAINDSPMDSPQTWMQMPDTFMMHDQSMMFASNGYSFEDNEW 175

Query: 176 NDMQSDSLWDP 186
             MQ+DSLWDP
Sbjct: 176 EHMQNDSLWDP 186

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357481281|ref|XP_003610926.1| Ethylene-responsive transcription factor [Medicago truncatula] gi|355512261|gb|AES93884.1| Ethylene-responsive transcription factor [Medicago truncatula]

 Score =  218 bits (554), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 123/178 (69%), Positives = 139/178 (78%), Gaps = 9/178 (5%)

Query: 17  YRGVRKRKWGKWVSEIREPGTKSRIWLGSFETAEMAAAAYDVAALHFRGREARLNFPELV 76
           YRGVRKRKWGKWVSEIREPGTK+RIWLGSFET EMAAAAYDVAALHFRGREARLNFPEL 
Sbjct: 11  YRGVRKRKWGKWVSEIREPGTKTRIWLGSFETPEMAAAAYDVAALHFRGREARLNFPELA 70

Query: 77  TSLPKPASSNAEDIRMAAHEAALRLR---NTSAGSTSEEAGGGSTSGGSSLGPVTVRLSP 133
            +LP+P S+NA+ IRMAAHEAALRLR   N  A   +    G S S   ++ P+ VRLSP
Sbjct: 71  NTLPRPLSNNADHIRMAAHEAALRLRANTNMLAPLDNNSGTGCSASSTDAVAPLRVRLSP 130

Query: 134 SQIQAINDSTMDSPKMWMDQMAEELML-EQNMMFSN--EFEGDEWNDMQ--SDSLWDP 186
           SQIQAINDS MDSP  WM QM+   M+ +QNM++ N  EFE +EW D+Q  SDSLWDP
Sbjct: 131 SQIQAINDSPMDSPPTWM-QMSHPFMMDDQNMLYGNGYEFEENEWEDIQQHSDSLWDP 187

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059062|ref|XP_002299698.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222846956|gb|EEE84503.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  212 bits (540), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 120/187 (64%), Positives = 147/187 (78%), Gaps = 8/187 (4%)

Query: 1   MDAKSLNSFHGGTSSSYRGVRKRKWGKWVSEIREPGTKSRIWLGSFETAEMAAAAYDVAA 60
           M+ ++  + HGG +SSY GVRKRKWGKWVSEIREP  K+RIWLGSFET EMAAAAYDVAA
Sbjct: 1   MEGRNSTAHHGGIASSYTGVRKRKWGKWVSEIREPEKKTRIWLGSFETPEMAAAAYDVAA 60

Query: 61  LHFRGREARLNFPELVTSLPKPASSNAEDIRMAAHEAALRLRNTSAGSTSEEAGGGSTSG 120
           LHFRG EA+LNFPEL   LP PASS+A+ IRMAAH+AA+ LR ++  S+         S 
Sbjct: 61  LHFRGCEAKLNFPELAGKLPMPASSSADHIRMAAHQAAVSLRPSTVDSSQ------GGSS 114

Query: 121 GSSLGPVTVRLSPSQIQAINDSTMDSPKMWMDQMAEELMLEQ-NMMFSNEFEGDEWNDMQ 179
            S++GP+TVRLSPSQIQAI++S +DSPKMWM QMAE   LE+ +MMFS++ E DEW++ Q
Sbjct: 115 SSNVGPITVRLSPSQIQAIHESPLDSPKMWM-QMAEIATLEESSMMFSDDIEDDEWDNNQ 173

Query: 180 SDSLWDP 186
           +DSLW P
Sbjct: 174 TDSLWGP 180

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15217490|ref|NP_177301.1| ethylene-responsive transcription factor ERF021 [Arabidopsis thaliana] gi|75262233|sp|Q9C9I2.1|ERF21_ARATH RecName: Full=Ethylene-responsive transcription factor ERF021 gi|12323725|gb|AAG51821.1|AC016163_10 putative TINY; 48985-48434 [Arabidopsis thaliana] gi|38564310|gb|AAR23734.1| At1g71450 [Arabidopsis thaliana] gi|45592920|gb|AAS68114.1| At1g71450 [Arabidopsis thaliana] gi|332197081|gb|AEE35202.1| ethylene-responsive transcription factor ERF021 [Arabidopsis thaliana]

 Score =  202 bits (515), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 105/175 (60%), Positives = 123/175 (70%), Gaps = 10/175 (5%)

Query: 12  GTSSSYRGVRKRKWGKWVSEIREPGTKSRIWLGSFETAEMAAAAYDVAALHFRGREARLN 71
           G  S+YRGVRKRKWGKWVSEIREPGTK+RIWLGSFET EMAA AYDVAA HFRGREARLN
Sbjct: 19  GVPSAYRGVRKRKWGKWVSEIREPGTKNRIWLGSFETPEMAATAYDVAAFHFRGREARLN 78

Query: 72  FPELVTSLPKPASSNAEDIRMAAHEAALRLRNTSAGSTSEEAGGGSTSGGSSLGPVTVRL 131
           FPEL +SLP+PA S+++ IRMA HEA L  R T     +E A    +S  S++ P  VRL
Sbjct: 79  FPELASSLPRPADSSSDSIRMAVHEATL-CRTTEG---TESAMQVDSSSSSNVAPTMVRL 134

Query: 132 SPSQIQAINDSTMDSPKMWMDQMAEELMLEQNMMFSNEFEGDEWNDMQSDSLWDP 186
           SP +IQAIN+ST+ SP   M    +       M F+N+ E + W   QSD LWDP
Sbjct: 135 SPREIQAINESTLGSPTTMMHSTYDP------MEFANDVEMNAWETYQSDFLWDP 183

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297838985|ref|XP_002887374.1| hypothetical protein ARALYDRAFT_476276 [Arabidopsis lyrata subsp. lyrata] gi|297333215|gb|EFH63633.1| hypothetical protein ARALYDRAFT_476276 [Arabidopsis lyrata subsp. lyrata]

 Score =  199 bits (507), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 105/175 (60%), Positives = 126/175 (72%), Gaps = 10/175 (5%)

Query: 12  GTSSSYRGVRKRKWGKWVSEIREPGTKSRIWLGSFETAEMAAAAYDVAALHFRGREARLN 71
           G  S+YRGVRKRKWGKWVSEIREPGTK+RIWLGSFET EMAA AYDVAA HFRGREARLN
Sbjct: 19  GVPSAYRGVRKRKWGKWVSEIREPGTKNRIWLGSFETPEMAATAYDVAAFHFRGREARLN 78

Query: 72  FPELVTSLPKPASSNAEDIRMAAHEAALRLRNTSAGSTSEEAGGGSTSGGSSLGPVTVRL 131
           FPEL +SLP+PA S+++ IRMA  EA L  R T     SE A   ++S  S++ P  VRL
Sbjct: 79  FPELASSLPRPADSSSDSIRMAVQEATL-CRTTEG---SESAMQVNSSSSSTVVPTMVRL 134

Query: 132 SPSQIQAINDSTMDSPKMWMDQMAEELMLEQNMMFSNEFEGDEWNDMQSDSLWDP 186
           SP++IQAIN+ST+ SP   M    +      +M+F+N+ E + W   QSD LWDP
Sbjct: 135 SPTEIQAINESTLGSPTTLMHSTYD------SMVFANDMEMNAWETYQSDFLWDP 183

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	186
TAIR|locus:2825329	183	AT1G71450 [Arabidopsis thalian	0.887	0.901	0.514	1.2e-40
TAIR|locus:2012653	184	AT1G33760 [Arabidopsis thalian	0.865	0.875	0.453	2.9e-32
TAIR|locus:2195985	244	AT1G77200 [Arabidopsis thalian	0.731	0.557	0.394	5.7e-20
TAIR|locus:2094897	236	AT3G16280 [Arabidopsis thalian	0.521	0.411	0.494	1.2e-19
TAIR|locus:2043495	225	ESE2 "ethylene and salt induci	0.446	0.368	0.554	1.9e-19
TAIR|locus:2058764	194	ERF38 "ERF family protein 38"	0.446	0.427	0.542	1.9e-19
TAIR|locus:2035257	192	AT1G01250 [Arabidopsis thalian	0.516	0.5	0.485	2.5e-19
TAIR|locus:2129111	179	AT4G16750 [Arabidopsis thalian	0.516	0.536	0.494	2.5e-19
TAIR|locus:2134128	221	AT4G32800 [Arabidopsis thalian	0.446	0.375	0.542	5.1e-19
TAIR|locus:2145249	218	tny "TINY" [Arabidopsis thalia	0.467	0.399	0.517	6.5e-19

TAIR|locus:2825329 AT1G71450 [Arabidopsis thaliana (taxid:3702)]

 Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 90/175 (51%), Positives = 105/175 (60%)

Query:    12 GTSSSYRGVRKRKWGKWVSEIREPGTKSRIWLGSFETXXXXXXXXXXXXLHFRGREARLN 71
             G  S+YRGVRKRKWGKWVSEIREPGTK+RIWLGSFET             HFRGREARLN
Sbjct:    19 GVPSAYRGVRKRKWGKWVSEIREPGTKNRIWLGSFETPEMAATAYDVAAFHFRGREARLN 78

Query:    72 FPELVTSLPKPASSNAEDIRMAAHEAALRLRNXXXXXXXXXXXXXXXXXXXXLGPVTVRL 131
             FPEL +SLP+PA S+++ IRMA HEA L  R                     + P  VRL
Sbjct:    79 FPELASSLPRPADSSSDSIRMAVHEATL-CRTTEGTESAMQVDSSSSSN---VAPTMVRL 134

Query:   132 SPSQIQAINDSTMDSPKMWMDQMAEELMLEQNMMFSNEFEGDEWNDMQSDSLWDP 186
             SP +IQAIN+ST+ SP   M    +       M F+N+ E + W   QSD LWDP
Sbjct:   135 SPREIQAINESTLGSPTTMMHSTYDP------MEFANDVEMNAWETYQSDFLWDP 183

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2012653 AT1G33760 [Arabidopsis thaliana (taxid:3702)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 78/172 (45%), Positives = 98/172 (56%)

Query:    16 SYRGVRKRKWGKWVSEIREPGTKSRIWLGSFETXXXXXXXXXXXXLHFRGREARLNFPEL 75
             SYRG+R+RKWGKWVSEIREPG K+RIWLGS+ET            LH RGR   LNFPEL
Sbjct:    19 SYRGIRRRKWGKWVSEIREPGKKTRIWLGSYETAEMAAAAYDAAALHLRGRGTNLNFPEL 78

Query:    76 VTSLPKPASSNAEDIRMAAHEAALRLRNXXXXXXXXXXXXXXXXXXXXLGPVTVRLSPSQ 135
             V S P+P SS++E I+ AA +AAL  +                      G   V LSP Q
Sbjct:    79 VDSFPRPESSSSEHIQAAAQDAALMFKPGRLSEPALESGQ---------GLSRVGLSPDQ 129

Query:   136 IQAINDSTMDSPKM-WMDQMAEELMLEQNMMFSNEFEGDEWNDMQS-DSLWD 185
             IQAIN+S +DSP+M WM  +      E    F  + + DE+ +MQ   S+W+
Sbjct:   130 IQAINESPLDSPRMGWMQDLEVADYEELYGQFFGQHDRDEFFEMQQFQSIWN 181

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2195985 AT1G77200 [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 56/142 (39%), Positives = 66/142 (46%)

Query:    17 YRGVRKRKWGKWVSEIREPGTKSRIWLGSFETXXXXXXXXXXXXLHFRGREARLNFPELV 76
             YRGVR R WGKWVSEIREP  KSRIWLG+F T            L  +G  A LNFPEL 
Sbjct:    43 YRGVRMRTWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDAAALTIKGTSAVLNFPELA 102

Query:    77 TSLPKPASSNAEDIRMAAHEAALRLRNXXXXXXXXXXXXXXXXXXXXLGPVTVRLSPSQI 136
             T LP+PASS+  D++ AA  AA                         + P   +LS S  
Sbjct:   103 TYLPRPASSSPRDVQAAAAVAA------AMDFSPSSSSLVVSDPTTVIAPAETQLSSSSY 156

Query:   137 QAINDSTMDSPKMWMDQMAEEL 158
                  S++          AEEL
Sbjct:   157 STCTSSSLSPSSEEAASTAEEL 178

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2094897 AT3G16280 [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 48/97 (49%), Positives = 58/97 (59%)

Query:     2 DAKSLNSFHGGTSSSYRGVRKRKWGKWVSEIREPGTKSRIWLGSFETXXXXXXXXXXXXL 61
             D+ S +S        YRGVR R WGKWVSEIR+P  K+RIWLG+F T            L
Sbjct:    46 DSSSASSSSSMQHPVYRGVRMRSWGKWVSEIRQPRKKTRIWLGTFVTADMAARAHDVAAL 105

Query:    62 HFRGREARLNFPELVTSLPKPASSNAEDIRMAAHEAA 98
               +G  A LNFPEL +  P+PASS+  DI+ AA EAA
Sbjct:   106 TIKGSSAVLNFPELASLFPRPASSSPHDIQTAAAEAA 142

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2043495 ESE2 "ethylene and salt inducible 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 46/83 (55%), Positives = 52/83 (62%)

Query:    17 YRGVRKRKWGKWVSEIREPGTKSRIWLGSFETXXXXXXXXXXXXLHFRGREARLNFPELV 76
             YRG R R WGKWVSEIREP  KSRIWLG+F T            L  +G  A LNFPEL 
Sbjct:    26 YRGARMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALSIKGSSAILNFPELA 85

Query:    77 TSLPKPASSNAEDIRMAAHEAAL 99
               LP+P S + +DI+ AA EAAL
Sbjct:    86 DFLPRPVSLSQQDIQAAAAEAAL 108

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

TAIR|locus:2058764 ERF38 "ERF family protein 38" [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 45/83 (54%), Positives = 55/83 (66%)

Query:    16 SYRGVRKRKWGKWVSEIREPGTKSRIWLGSFETXXXXXXXXXXXXLHFRGREARLNFPEL 75
             ++RGVR R+WGKWVSEIREP  KSRIWLG+F T            L  +G  A LNFPEL
Sbjct:    44 NFRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTAEMAARAHDVAALAIKGGSAHLNFPEL 103

Query:    76 VTSLPKPASSNAEDIRMAAHEAA 98
                LP+PAS++ +DI+ AA  AA
Sbjct:   104 AYHLPRPASADPKDIQAAAAAAA 126

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=IGI

GO:0009834 "secondary cell wall biogenesis" evidence=TAS

TAIR|locus:2035257 AT1G01250 [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 51/105 (48%), Positives = 64/105 (60%)

Query:     3 AKSLNSFHGG---TSSS------YRGVRKRKWGKWVSEIREPGTKSRIWLGSFETXXXXX 53
             A ++ S  GG   TSSS      Y GVRKR+WGKWVSEIREP  KSRIWLGSF       
Sbjct:    22 ASAVKSCGGGGKETSSSTTRHPVYHGVRKRRWGKWVSEIREPRKKSRIWLGSFPVPEMAA 81

Query:    54 XXXXXXXLHFRGREARLNFPELVTSLPKPASSNAEDIRMAAHEAA 98
                       +GR+A+LNFPE +  LP+P++    DI++AA +AA
Sbjct:    82 KAYDVAAFCLKGRKAQLNFPEEIEDLPRPSTCTPRDIQVAAAKAA 126

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009409 "response to cold" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

TAIR|locus:2129111 AT4G16750 [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 48/97 (49%), Positives = 61/97 (62%)

Query:     3 AKSLNSFHGGTSS-SYRGVRKRKWGKWVSEIREPGTKSRIWLGSFETXXXXXXXXXXXXL 61
             +K+ N   G +   ++RGVR R+WGKWVSEIREP  KSRIWLG+F T            L
Sbjct:    25 SKTKNEQKGVSKQPNFRGVRMRQWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAAL 84

Query:    62 HFRGREARLNFPELVTSLPKPASSNAEDIRMAAHEAA 98
               +G  A LNFPEL   LP+PAS++ +DI+ AA  AA
Sbjct:    85 AIKGGSAHLNFPELAYHLPRPASADPKDIQEAAAAAA 121

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

TAIR|locus:2134128 AT4G32800 [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 45/83 (54%), Positives = 52/83 (62%)

Query:    17 YRGVRKRKWGKWVSEIREPGTKSRIWLGSFETXXXXXXXXXXXXLHFRGREARLNFPELV 76
             YRGVR R WGKWVSEIREP  KSRIWLG+F T            +  +G  A LNFPEL 
Sbjct:    19 YRGVRMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAMRAHDVAAMSIKGTSAILNFPELS 78

Query:    77 TSLPKPASSNAEDIRMAAHEAAL 99
               LP+P S +  D+R AA +AAL
Sbjct:    79 KLLPRPVSLSPRDVRAAATKAAL 101

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2145249 tny "TINY" [Arabidopsis thaliana (taxid:3702)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 45/87 (51%), Positives = 55/87 (63%)

Query:    12 GTSSSYRGVRKRKWGKWVSEIREPGTKSRIWLGSFETXXXXXXXXXXXXLHFRGREARLN 71
             G    YRGVRKR WGKWVSEIREP  KSRIWLG+F +            L  +G  A LN
Sbjct:    31 GKHPVYRGVRKRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKGASAILN 90

Query:    72 FPELVTSLPKPASSNAEDIRMAAHEAA 98
             FP+L  S P+P+S +  DI++AA +AA
Sbjct:    91 FPDLAGSFPRPSSLSPRDIQVAALKAA 117

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009825 "multidimensional cell growth" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C9I2	ERF21_ARATH	No assigned EC number	0.6	0.8870	0.9016	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: DREB49 AP2/ERF domain-containing transcription factor (169 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	186
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	5e-35
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	2e-32
pfam00847	53	pfam00847, AP2, AP2 domain	5e-14

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  116 bits (294), Expect = 5e-35
 Identities = 40/60 (66%), Positives = 46/60 (76%)

Query: 16 SYRGVRKRKWGKWVSEIREPGTKSRIWLGSFETAEMAAAAYDVAALHFRGREARLNFPEL 75
           YRGVR+R WGKWV+EIR+P    R+WLG+F+TAE AA AYD AA  FRGR ARLNFP  
Sbjct: 1  KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNS 60

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  110 bits (277), Expect = 2e-32
 Identities = 40/61 (65%), Positives = 46/61 (75%)

Query: 15 SSYRGVRKRKWGKWVSEIREPGTKSRIWLGSFETAEMAAAAYDVAALHFRGREARLNFPE 74
          S YRGVR+R WGKWV+EIR+P    RIWLG+F+TAE AA AYD AAL  RG  A LNFP+
Sbjct: 1  SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPD 60

Query: 75 L 75
           
Sbjct: 61 S 61

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 63.1 bits (154), Expect = 5e-14
 Identities = 29/54 (53%), Positives = 34/54 (62%), Gaps = 4/54 (7%)

Query: 15 SSYRGVRKRK-WGKWVSEIREPGTKS--RIWLGSFETAEMAAAAYDVAALHFRG 65
          S Y+GVR  K WG+WV+EIR+PG K   R  LG+F T E AA A   A L  RG
Sbjct: 1  SGYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	186
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.85
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.83
PHA00280	121	putative NHN endonuclease	99.45
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.12

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.85  E-value=1.4e-21  Score=133.99  Aligned_cols=61  Identities=66%  Similarity=1.161  Sum_probs=57.9

Q ss_pred             CceeeeEECCCCcEEEEEecCCCCcEEEecCCCCHHHHHHHHHHHHHhhccCcccCCCCCC
Q 035756           15 SSYRGVRKRKWGKWVSEIREPGTKSRIWLGSFETAEMAAAAYDVAALHFRGREARLNFPEL   75 (186)
Q Consensus        15 s~yrGVr~r~~GkW~A~I~~p~~~kri~LGtf~t~EeAA~AyD~Aa~~l~g~~a~lNFp~~   75 (186)
                      |+||||+++++|||+|+|+++..++++|||+|+|+|||+.|||.++++++|..+.+|||++
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            6899999888899999999966699999999999999999999999999999999999985

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.83  E-value=2.5e-20  Score=129.23  Aligned_cols=62  Identities=65%  Similarity=1.202  Sum_probs=58.7

Q ss_pred             ceeeeEECCCCcEEEEEecCCCCcEEEecCCCCHHHHHHHHHHHHHhhccCcccCCCCCCCC
Q 035756           16 SYRGVRKRKWGKWVSEIREPGTKSRIWLGSFETAEMAAAAYDVAALHFRGREARLNFPELVT   77 (186)
Q Consensus        16 ~yrGVr~r~~GkW~A~I~~p~~~kri~LGtf~t~EeAA~AyD~Aa~~l~g~~a~lNFp~~~~   77 (186)
                      +|+||+++++|||+|+|++|.+++++|||+|+|+||||.|||.++++++|..+.+|||.+..
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y   62 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLY   62 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccC
Confidence            59999988899999999999999999999999999999999999999999999999998643

>PHA00280 putative NHN endonuclease

Probab=99.45  E-value=1.7e-13  Score=106.81  Aligned_cols=58  Identities=17%  Similarity=0.222  Sum_probs=52.1

Q ss_pred             CCCCCCCceeeeEEC-CCCcEEEEEecCCCCcEEEecCCCCHHHHHHHHHHHHHhhccCccc
Q 035756            9 FHGGTSSSYRGVRKR-KWGKWVSEIREPGTKSRIWLGSFETAEMAAAAYDVAALHFRGREAR   69 (186)
Q Consensus         9 ~~~~~~s~yrGVr~r-~~GkW~A~I~~p~~~kri~LGtf~t~EeAA~AyD~Aa~~l~g~~a~   69 (186)
                      .+++|+|+|+||++. ..|||+|+|++  ++|+++||.|+++|+|+.||+ ++.+|+|.+++
T Consensus        61 ~~~~N~SG~kGV~~~k~~~kw~A~I~~--~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         61 TPKSNTSGLKGLSWSKEREMWRGTVTA--EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             CCCCCCCCCCeeEEecCCCeEEEEEEE--CCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            457889999999865 47999999999  999999999999999999997 77889998764

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.12  E-value=1.2e-10  Score=77.87  Aligned_cols=51  Identities=33%  Similarity=0.468  Sum_probs=45.0

Q ss_pred             CceeeeEECC-CCcEEEEEecCCC---CcEEEecCCCCHHHHHHHHHHHHHhhcc
Q 035756           15 SSYRGVRKRK-WGKWVSEIREPGT---KSRIWLGSFETAEMAAAAYDVAALHFRG   65 (186)
Q Consensus        15 s~yrGVr~r~-~GkW~A~I~~p~~---~kri~LGtf~t~EeAA~AyD~Aa~~l~g   65 (186)
                      |+|+||++.+ .++|+|+|+++..   +++++||.|.+++||++|++.+.+.++|
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~   55 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEG   55 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcC
Confidence            6899998654 7999999999422   4999999999999999999999999986

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	186
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		2e-09
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		6e-09

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 17 YRGVRKRKWGKWVSEIREPGTK-SRIWLGSFETXXXXXXXXXXXXLHFRGREARLNFPEL 75
          YRGVR+R WGK+ +EIR+P    +R+WLG+FET               RG  A LNFP  
Sbjct: 6  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 65
Query: 76 VTS 78
          V S
Sbjct: 66 VNS 68

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 57.0 bits (136), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 17 YRGVRKRKWGKWVSEIREPGTK-SRIWLGSFETXXXXXXXXXXXXLHFRGREARLNFPEL 75
          YRGVR+R WGK+ +EIR+P    +R+WLG+FET               RG  A LNFP  
Sbjct: 3  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62
Query: 76 V 76
          V
Sbjct: 63 V 63
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	186
1gcc_A	63	Ethylene responsive element binding factor 1; tran	2e-30

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  105 bits (263), Expect = 2e-30
 Identities = 37/61 (60%), Positives = 44/61 (72%), Gaps = 1/61 (1%)

Query: 17 YRGVRKRKWGKWVSEIREPGTK-SRIWLGSFETAEMAAAAYDVAALHFRGREARLNFPEL 75
          YRGVR+R WGK+ +EIR+P    +R+WLG+FETAE AA AYD AA   RG  A LNFP  
Sbjct: 3  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62

Query: 76 V 76
          V
Sbjct: 63 V 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	186
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.92
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	88.07
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	81.44

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.92  E-value=7.4e-26  Score=156.70  Aligned_cols=61  Identities=61%  Similarity=1.053  Sum_probs=57.6

Q ss_pred             ceeeeEECCCCcEEEEEecCCC-CcEEEecCCCCHHHHHHHHHHHHHhhccCcccCCCCCCC
Q 035756           16 SYRGVRKRKWGKWVSEIREPGT-KSRIWLGSFETAEMAAAAYDVAALHFRGREARLNFPELV   76 (186)
Q Consensus        16 ~yrGVr~r~~GkW~A~I~~p~~-~kri~LGtf~t~EeAA~AyD~Aa~~l~g~~a~lNFp~~~   76 (186)
                      +||||+++++|||+|+|++|.+ ++++|||+|+|+||||+|||.|+++++|..+++|||+++
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~~   63 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV   63 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCcC
Confidence            6999998889999999999985 699999999999999999999999999999999999863

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=88.07  E-value=0.34  Score=34.18  Aligned_cols=24  Identities=29%  Similarity=0.412  Sum_probs=19.7

Q ss_pred             CCCCceeeeEECC-CCcEEEEEecC
Q 035756           12 GTSSSYRGVRKRK-WGKWVSEIREP   35 (186)
Q Consensus        12 ~~~s~yrGVr~r~-~GkW~A~I~~p   35 (186)
                      ..+|+|.||++.+ .+.|+|.-.+.
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e~   27 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYDG   27 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEET
T ss_pred             CCCCCCCcEEeecCCceEEEEEecC
Confidence            4679999998765 79999999984

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=81.44  E-value=0.3  Score=38.25  Aligned_cols=39  Identities=8%  Similarity=-0.034  Sum_probs=29.3

Q ss_pred             eeeeEECCCCcEEEEEecCCCCcEEEecCCCCHHHHHHHHHH
Q 035756           17 YRGVRKRKWGKWVSEIREPGTKSRIWLGSFETAEMAAAAYDV   58 (186)
Q Consensus        17 yrGVr~r~~GkW~A~I~~p~~~kri~LGtf~t~EeAA~AyD~   58 (186)
                      ++||...+.++|.+.|..  . +.++||.|.|.+|||++|.+
T Consensus       109 ~~g~~~~~~~k~~~vi~~--~-~~~~~~~f~s~~eAa~~~Gv  147 (174)
T 1u3e_M          109 SKAQQIAKIKNQKPIIVI--S-PDGIEKEYPSTKCACEELGL  147 (174)
T ss_dssp             HHHHHHHHHHTCCCEEEE--C-TTSCEEEESCHHHHHHHHTC
T ss_pred             eeeeeeccCCCCceEEEE--c-CCceEEeeCCHHHHHHHHCc
Confidence            456644224678889988  5 56789999999999999743

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	186
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	3e-31

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  105 bits (265), Expect = 3e-31
 Identities = 37/61 (60%), Positives = 44/61 (72%), Gaps = 1/61 (1%)

Query: 17 YRGVRKRKWGKWVSEIREPGTK-SRIWLGSFETAEMAAAAYDVAALHFRGREARLNFPEL 75
          YRGVR+R WGK+ +EIR+P    +R+WLG+FETAE AA AYD AA   RG  A LNFP  
Sbjct: 3  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62

Query: 76 V 76
          V
Sbjct: 63 V 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	186
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.91

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.91  E-value=1.4e-25  Score=153.92  Aligned_cols=59  Identities=61%  Similarity=1.081  Sum_probs=55.3

Q ss_pred             ceeeeEECCCCcEEEEEecCCC-CcEEEecCCCCHHHHHHHHHHHHHhhccCcccCCCCC
Q 035756           16 SYRGVRKRKWGKWVSEIREPGT-KSRIWLGSFETAEMAAAAYDVAALHFRGREARLNFPE   74 (186)
Q Consensus        16 ~yrGVr~r~~GkW~A~I~~p~~-~kri~LGtf~t~EeAA~AyD~Aa~~l~g~~a~lNFp~   74 (186)
                      .||||+++++|||+|+|++|.. ++++|||+|+|+||||+|||+|+++++|..+.+|||.
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~   61 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL   61 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCc
Confidence            4999999889999999998754 5899999999999999999999999999999999996