Citrus Sinensis ID: 035792

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850------
MEVEGVEVDGEKGDDPVATNAEFDKSKKQNVTENSSEIEVTNHDNGESSKPYVGMEFDSEDAAKTFYDAYARRMGFSTHVGPFTRAKPDGPIITWDFACSREVFKRKNVESCNAVLRIERKDSEKWTVTKFVEDHNHSMVTPNKVQYLRPRRHFAGATKNVAEALDVSGDVYITTDGNHLSYEPNSIRNSLPVDPSRSTRNMGPVNYLRQPSRTRSLGRDAQNLLNYFKKMQAENPGFYYAIQLDDDNRMTNVFWADARSRMAYNHFSDAVIFDTMYRPNQYQVPFAPFTGVNHHGQMVLFGCALLLDESEASFTWLFRTWLSAMNDRPPVSITTDQDRAIQVAVAQVLPETCHCICKWHILREGQERLAHIYLAHPSFYGELYSCINFCETIEEFESSWCSLLDKYDLQKNEWLHAVYNARRQWAPVYFRGTFFAALSSNQGISSFFDGYVHQQTTIPLFFKQYERALENSREKEIELDYDTICTTPVLKTPSPMEQQAANLYTKKVFAKFQEELVETFVYTANKIEGDGVLSKFRVAKYEQDDKAYIVSFSEMKASCSCQMFEYSGILCRHILTVFTVTNVLTLPSHYILKRWTRNAKSSIGLDEQNTDTQGIETLTLRFNKLCQEAIKYAEVGALAVETYNVAISALKEAGKKVLAVKKNVAKISPPSSQVVLYSQEDSNKKTPPSVPEMIPSLWPWQEAMPHRFNLNDSGVSVSDLNQPSMVPVSFHRDCGTPDSTVVLTCFKSMTWVIENKNSTSASKVAVINLKLQDYGKKPSGETEVQFRLTKTTLEPMLRSMAYISQQLSAPANKVAVINLKLQDTKTTSGEAEVKFQVSRDTLGSMLRSLAYIREQL
cccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccHHHHHHHHHHHHHHccEEEEEcccEEccccccEEEEEEEEcccccccccccccccEEEEEEEccccEEEEEEEcccccccccccccccccccccccHHHHHHHHHHHcccccEEEccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccEEEEEEcccccEEEEEEcccccHHHHHHccccEEEcccccccccccccccEEEccccccEEEEEEEccccccccHHHHHHHHHHHHccccccccccHHHcHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHcccccccccccHHHHcccccHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEcccEEEEEEEEEEccccEEEEEEccccEEEEEEccccccccccHHHHHHHHHccccccccccHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccHHccccccccccEEEEEEcccccccccccccEEEEEEEcccHHHHHHHHHHHHHHHcccccccEEEEEcccccccccccEEEEEEEEHHHHHHHHHHHHHHHHHc
ccccEEEcccccccccccccccccccccccccccccccccccccccccccccccEEEccHHHHHHHHHHHHHHcccEEEEEccEcEccccEEEEEEEEEccccccccccccccEEEEEEEEcccEEEEEEEEcccccccccHHHcHHccccccccHHHHHHHHHHHHccccccccccccccHccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccEEEEEEEcccccEEEEEEEcccHHHHHHHcccEEEEEcEEccccccccEEEEEEEcccccEEEEEHHHHccccHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHcccEEEEcccccEEEEEEEEcccccEEEEEEccccEEEEEEHHEEccccHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccEEEEcccccHEEEEcccccccccEEEEEEEEEcccccccccEEEEEEEccccHHHHHHHHHHHHHHccccccEEEEEEEEccccccccccEEEEEEEcHHHHHHHHHHHHHHHHHc
mevegvevdgekgddpvatnaefdkskkqnvtensseievtnhdngesskpyvgmefdsedAAKTFYDAYARRmgfsthvgpftrakpdgpiitwdfacsrevfkrkNVESCNAVLRIERKDSEKWTVTKFVEdhnhsmvtpnkvqylrprrhfagATKNVAEALDvsgdvyittdgnhlsyepnsirnslpvdpsrstrnmgpvnylrqpsrtrslgRDAQNLLNYFKKMqaenpgfyyaiqldddnrmtNVFWADARSRMAYNHFSDAVIfdtmyrpnqyqvpfapftgvnhhgqMVLFGCALLLDESEASFTWLFRTWLsamndrppvsittdQDRAIQVAVAQVLPETCHCICKWHILREGQERLAHIYLahpsfygelyscINFCETIEEFESSWCslldkydlqknEWLHAVYNARRQWAPVYFRGTFFAALSSNQGISSFFDGYVHQQTTIPLFFKQYERALENSRekeieldydticttpvlktpspmeQQAANLYTKKVFAKFQEELVETFVYTANKIEGDGVLSKFRVakyeqddkAYIVSFSEMKascscqmfeysgilCRHILTVFTVtnvltlpshyiLKRWTrnakssigldeqntdtqGIETLTLRFNKLCQEAIKYAEVGALAVETYNVAISALKEAGKKVLAVKKnvakisppssqVVLYsqedsnkktppsvpemipslwpwqeamphrfnlndsgvsvsdlnqpsmvpvsfhrdcgtpdstVVLTCFKSMTWVIENKNSTSASKVAVINLKlqdygkkpsgeteVQFRLTKTTLEPMLRSMAYISQQLSAPANKVAVINLKlqdtkttsgeaeVKFQVSRDTLGSMLRSLAYIREQL
mevegvevdgekgddpvatnaefdkskkqnvtensseievtnhdngesskpyvgMEFDSEDAAKTFYDAYARRMGFSTHVGPFTRAKPDGPIITWDFACsrevfkrknvescnavlrierkdsekwTVTKfvedhnhsmvtpnkvqylrPRRHFAGATKNVAEALDVSGDVYITTDgnhlsyepnsirnslpvdpsrstrnmgpvnylrqpsrtrslgRDAQNLLNYFKKMQAENPGFYYAIQLDDDNRMTNVFWADARSRMAYNHFSDAVIFDTMYRPNQYQVPFAPFTGVNHHGQMVLFGCALLLDESEASFTWLFRTWLSAMNDRPPVSITTDQDRAIQVAVAQVLPETCHCICKWHILREGQERLAHIYLAHPSFYGELYSCINFCETIEEFESSWCSLLDKYDLQKNEWLHAVYNARRQWAPVYFRGTFFAALSSNQGISSFFDGYVHQQTTIPLFFKQYERALENSrekeieldydTICTTPVLKTPSPMEQQAANLYTKKVFAKFQEELVETFVYTankiegdgvlsKFRVAKYEQDDKAYIVSFSEMKASCSCQMFEYSGILCRHILTVFTVTNVLTLPSHYILKRWTRNAkssigldeqntdtQGIETLTLRFNKLCQEAIKYAEVGALAVETYNVAISALKEAGKKVLAVKknvakisppssqvvLYSQedsnkktppsvPEMIPSLWPWQEAMPHRFNLNDSGVSVSDLNQPSMVPVSFHRDCGTPDSTVVLTCFKSMTWVIenknstsaskVAVINLKlqdygkkpsgetevQFRLTKTTLEPMLRSMAYISQQLSAPANKVAVINLKLqdtkttsgeaevkfqvsrdtlgsmLRSLAYIREQL
MevegvevdgekgddPVATNAEFDKSKKQNVTENSSEIEVTNHDNGESSKPYVGMEFDSEDAAKTFYDAYARRMGFSTHVGPFTRAKPDGPIITWDFACSREVFKRKNVESCNAVLRIERKDSEKWTVTKFVEDHNHSMVTPNKVQYLRPRRHFAGATKNVAEALDVSGDVYITTDGNHLSYEPNSIRNSLPVDPSRSTRNMGPVNYLRQPSRTRSLGRDAQNLLNYFKKMQAENPGFYYAIQLDDDNRMTNVFWADARSRMAYNHFSDAVIFDTMYRPNQYQVPFAPFTGVNHHGQMVLFGCALLLDESEASFTWLFRTWLSAMNDRPPVSITTDQDRAIQVAVAQVLPETCHCICKWHILREGQERLAHIYLAHPSFYGELYSCINFCETIEEFESSWCSLLDKYDLQKNEWLHAVYNARRQWAPVYFRGTFFAALSSNQGISSFFDGYVHQQTTIPLFFKQYERALENSREKEIELDYDTICTTPVLKTPSPMEQQAANLYTKKVFAKFQEELVETFVYTANKIEGDGVLSKFRVAKYEQDDKAYIVSFSEMKASCSCQMFEYSGILCRHIltvftvtnvltlPSHYILKRWTRNAKSSIGLDEQNTDTQGIETLTLRFNKLCQEAIKYAEVGALAVETYNVAISALKEagkkvlavkknvakISPPSSQVVLYSQEDSNKKTPPSVPEMIPSLWPWQEAMPHRFNLNDSGVSVSDLNQPSMVPVSFHRDCGTPDSTVVLTCFKSMTWVIENKNSTSASKVAVINLKLQDYGKKPSGETEVQFRLTKTTLEPMLRSMAYISQQLSAPANKVAVINLKLQDTKTTSGEAEVKFQVSRDTLGSMLRSLAYIREQL
*************************************************************AAKTFYDAYARRMGFSTHVGPFTRAKPDGPIITWDFACSREVFKRKNVESCNAVLRIERKDSEKWTVTKFVEDHNHSMVTPNKVQYLRPRRHFAGATKNVAEALDVSGDVYITTDGNHL******************************************NLLNYFKKMQAENPGFYYAIQLDDDNRMTNVFWADARSRMAYNHFSDAVIFDTMYRPNQYQVPFAPFTGVNHHGQMVLFGCALLLDESEASFTWLFRTWLSAMNDRPPVSITTDQDRAIQVAVAQVLPETCHCICKWHILREGQERLAHIYLAHPSFYGELYSCINFCETIEEFESSWCSLLDKYDLQKNEWLHAVYNARRQWAPVYFRGTFFAALSSNQGISSFFDGYVHQQTTIPLFFKQYERALENSREKEIELDYDTICTTPVLKT******QAANLYTKKVFAKFQEELVETFVYTANKIEGDGVLSKFRVAKYEQDDKAYIVSFSEMKASCSCQMFEYSGILCRHILTVFTVTNVLTLPSHYILKRWTRNAKSSIGLDEQNTDTQGIETLTLRFNKLCQEAIKYAEVGALAVETYNVAISALKEAGKKVLAVKKNVA******************************SLWPWQEAMPHRFNL***************VPVSFHRDCGTPDSTVVLTCFKSMTWVIENKNSTSASKVAVINLKLQDY*********VQFRLTKTTLEPMLRSMAYISQQLSAPANKVAVINLKLQ**********************************
****G******************************************SSKPYVGMEFDSEDAAKTFYDAYARRMGFSTHVGPFTRAKPDGPIITWDFACSREVFKRKNVESCNAVLRIERKDSEKWTVTKFVEDHNHSMVTPNKVQYLRPRRHFAGATKNVAEALDVSGDVYITTDGNHLSYEPNSIRNSLPVDPSRSTRNMGPVNYLRQPSRTRSLGRDAQNLLNYFKKMQAENPGFYYAIQLDDDNRMTNVFWADARSRMAYNHFSDAVIFDTMYRPNQYQVPFAPFTGVNHHGQMVLFGCALLLDESEASFTWLFRTWLSAMNDRPPVSITTDQDRAIQVAVAQVLPETCHCICKWHILREGQERLAHIYLAHPSFYGELYSCINFCETIEEFESSWCSLLDKYDLQKNEWLHAVYNARRQWAPVYFRGTFFAALSSNQGISSFFDGYVHQQTTIPLFFKQYERALENSREKEIELDYDTICTTPVLKTPSPMEQQAANLYTKKVFAKFQEELVETFVYTANKIEGDGVLSKFRVAKYEQDDKAYIVSFSEMKASCSCQMFEYSGILCRHILTVFTVTNVLTLPSHYILKRWTRNAKSSIGL*****DTQGIETLTLRFNKLCQEAIKYAEVGALAVETYNVAISALKEAGKKVL*******************************************************************************************************************************FRLTKTTLEPMLRSMAYISQQLSAPANKVAVINLKL************KFQVSRDTLGSMLRSLAYIREQL
************GDDPVATNAEFDKS*****************DNGESSKPYVGMEFDSEDAAKTFYDAYARRMGFSTHVGPFTRAKPDGPIITWDFACSREVFKRKNVESCNAVLRIERKDSEKWTVTKFVEDHNHSMVTPNKVQYLRPRRHFAGATKNVAEALDVSGDVYITTDGNHLSYEPNSIRNSLPVDPSRSTRNMGPVNYLRQPSRTRSLGRDAQNLLNYFKKMQAENPGFYYAIQLDDDNRMTNVFWADARSRMAYNHFSDAVIFDTMYRPNQYQVPFAPFTGVNHHGQMVLFGCALLLDESEASFTWLFRTWLSAMNDRPPVSITTDQDRAIQVAVAQVLPETCHCICKWHILREGQERLAHIYLAHPSFYGELYSCINFCETIEEFESSWCSLLDKYDLQKNEWLHAVYNARRQWAPVYFRGTFFAALSSNQGISSFFDGYVHQQTTIPLFFKQYERALENSREKEIELDYDTICTTPVLKTPSPMEQQAANLYTKKVFAKFQEELVETFVYTANKIEGDGVLSKFRVAKYEQDDKAYIVSFSEMKASCSCQMFEYSGILCRHILTVFTVTNVLTLPSHYILKRWTRNAKSSIGLDEQNTDTQGIETLTLRFNKLCQEAIKYAEVGALAVETYNVAISALKEAGKKVLAVKKNVAKISPPSSQVVL**************PEMIPSLWPWQEAMPHRFNLNDSGVSVSDLNQPSMVPVSFHRDCGTPDSTVVLTCFKSMTWVIENKNSTSASKVAVINLKLQDYGKKPSGETEVQFRLTKTTLEPMLRSMAYISQQLSAPANKVAVINLKLQDTKTTSGEAEVKFQVSRDTLGSMLRSLAYIREQL
******E***************************************ESSKPYVGMEFDSEDAAKTFYDAYARRMGFSTHVGPFTRAKPDGPIITWDFACSREVFKRKNVESCNAVLRIERKDSEKWTVTKFVEDHNHSMVTPNKVQYLRPRRHFAGATKNVAEALDVSGDVYITTDGNHLSYEPNSIRNSLPVDPSRSTRNMGPVNYLRQPSRTRSLGRDAQNLLNYFKKMQAENPGFYYAIQLDDDNRMTNVFWADARSRMAYNHFSDAVIFDTMYRPNQYQVPFAPFTGVNHHGQMVLFGCALLLDESEASFTWLFRTWLSAMNDRPPVSITTDQDRAIQVAVAQVLPETCHCICKWHILREGQERLAHIYLAHPSFYGELYSCINFCETIEEFESSWCSLLDKYDLQKNEWLHAVYNARRQWAPVYFRGTFFAALSSNQGISSFFDGYVHQQTTIPLFFKQYERALENSREKEIELDYDTICTTPVLKTPSPMEQQAANLYTKKVFAKFQEELVETFVYTANKIEGDGVLSKFRVAKYEQDDKAYIVSFSEMKASCSCQMFEYSGILCRHILTVFTVTNVLTLPSHYILKRWTRNAKS*************IETLTLRFNKLCQEAIKYAEVGALAVETYNVAISALKEAGKKVLAVKKN********************************************************************RDCGTPDSTVVLTCFKSMTWVIENKNSTSASKVAVINLKLQDYGKKPSGETEVQFRLTKTTLEPMLRSMAYISQQLSAPANKVAVINLKLQDTKTTSGEAEVKFQVSRDTLGSMLRSLAYIR*QL
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MEVEGVEVDGEKGDDPVATNAEFDKSKKQNVTENSSEIEVTNHDNGESSKPYVGMEFDSEDAAKTFYDAYARRMGFSTHVGPFTRAKPDGPIITWDFACSREVFKRKNVESCNAVLRIERKDSEKWTVTKFVEDHNHSMVTPNKVQYLRPRRHFAGATKNVAEALDVSGDVYITTDGNHLSYEPNSIRNSLPVDPSRSTRNMGPVNYLRQPSRTRSLGRDAQNLLNYFKKMQAENPGFYYAIQLDDDNRMTNVFWADARSRMAYNHFSDAVIFDTMYRPNQYQVPFAPFTGVNHHGQMVLFGCALLLDESEASFTWLFRTWLSAMNDRPPVSITTDQDRAIQVAVAQVLPETCHCICKWHILREGQERLAHIYLAHPSFYGELYSCINFCETIEEFESSWCSLLDKYDLQKNEWLHAVYNARRQWAPVYFRGTFFAALSSNQGISSFFDGYVHQQTTIPLFFKQYERALENSREKEIELDYDTICTTPVLKTPSPMEQQAANLYTKKVFAKFQEELVETFVYTANKIEGDGVLSKFRVAKYEQDDKAYIVSFSEMKASCSCQMFEYSGILCRHILTVFTVTNVLTLPSHYILKRWTRNAKSSIGLDEQNTDTQGIETLTLRFNKLCQEAIKYAEVGALAVETYNVAISALKEAGKKVLAVKKNVAKISPPSSQVVLYSQEDSNKKTPPSVPEMIPSLWPWQEAMPHRFNLNDSGVSVSDLNQPSMVPVSFHRDCGTPDSTVVLTCFKSMTWVIENKNSTSASKVAVINLKLQDYGKKPSGETEVQFRLTKTTLEPMLRSMAYISQQLSAPANKVAVINLKLQDTKTTSGEAEVKFQVSRDTLGSMLRSLAYIREQL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query856 2.2.26 [Sep-21-2011]
Q9ZVC9851 Protein FAR1-RELATED SEQU yes no 0.960 0.965 0.574 0.0
Q9SZL8788 Protein FAR1-RELATED SEQU no no 0.705 0.766 0.472 1e-176
Q9SZL7545 Protein FAR1-RELATED SEQU no no 0.522 0.820 0.511 1e-132
Q9M8J3764 Protein FAR1-RELATED SEQU no no 0.662 0.742 0.381 1e-117
Q9SWG3827 Protein FAR-RED IMPAIRED no no 0.716 0.741 0.355 1e-117
Q3E7I5788 Protein FAR1-RELATED SEQU no no 0.667 0.724 0.387 1e-114
Q9LIE5839 Protein FAR-RED ELONGATED no no 0.748 0.764 0.316 1e-106
Q6NQJ7732 Protein FAR1-RELATED SEQU no no 0.684 0.800 0.340 1e-100
Q3EBQ3807 Protein FAR1-RELATED SEQU no no 0.661 0.701 0.318 1e-96
Q9SSQ4703 Protein FAR1-RELATED SEQU no no 0.690 0.840 0.306 5e-83
>sp|Q9ZVC9|FRS3_ARATH Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana GN=FRS3 PE=2 SV=2 Back     alignment and function desciption
 Score = 1000 bits (2585), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/868 (57%), Positives = 632/868 (72%), Gaps = 46/868 (5%)

Query: 1   MEVEGVEVDGEKGDDPVATNAEFDKS--KKQNVTENSSEIEVTNHDNGESSKPYVGMEFD 58
           M+V  VE +   G+  +    + + S    QN  +NS  ++    D    ++P VGMEF+
Sbjct: 1   MDVHLVEENVSMGNHEIGDEGDVEPSDCSGQNNMDNSLGVQ----DEIGIAEPCVGMEFN 56

Query: 59  SEDAAKTFYDAYARRMGFSTHVGPFTRAKPDGPIITWDFACSREVFKRKNV--ESCNAVL 116
           SE  AK+FYD Y+R++GF++ + P T    DG +   +F CS    + K    ESC+A++
Sbjct: 57  SEKEAKSFYDEYSRQLGFTSKLLPRT----DGSVSVREFVCSSSSKRSKRRLSESCDAMV 112

Query: 117 RIERKDSEKWTVTKFVEDHNHSMVTPNKVQYLRPRRHFAGATKN-VAEALDV-SGDVYIT 174
           RIE +  EKW VTKFV++H H + + N +  LRPRRHFA + K+   E ++V SG +Y++
Sbjct: 113 RIELQGHEKWVVTKFVKEHTHGLASSNMLHCLRPRRHFANSEKSSYQEGVNVPSGMMYVS 172

Query: 175 TDGNHLSYEPNSIRNSLPVDPSRSTRNMGPVNYLRQPSRTRSLGRDAQNLLNYFKKMQAE 234
            D N                 SR  RN       +     R++GRDA NLL YFK+MQAE
Sbjct: 173 MDAN-----------------SRGARNASMATNTK-----RTIGRDAHNLLEYFKRMQAE 210

Query: 235 NPGFYYAIQLDDDNRMTNVFWADARSRMAYNHFSDAVIFDTMYRPNQYQVPFAPFTGVNH 294
           NPGF+YA+QLD+DN+M+NVFWAD+RSR+AY HF D V  DT YR NQ++VPFAPFTGVNH
Sbjct: 211 NPGFFYAVQLDEDNQMSNVFWADSRSRVAYTHFGDTVTLDTRYRCNQFRVPFAPFTGVNH 270

Query: 295 HGQMVLFGCALLLDESEASFTWLFRTWLSAMNDRPPVSITTDQDRAIQVAVAQVLPETCH 354
           HGQ +LFGCAL+LDES+ SF WLF+T+L+AM D+PPVS+ TDQDRAIQ+A  QV P   H
Sbjct: 271 HGQAILFGCALILDESDTSFIWLFKTFLTAMRDQPPVSLVTDQDRAIQIAAGQVFPGARH 330

Query: 355 CICKWHILREGQERLAHIYLAHPSFYGELYSCINFCETIEEFESSWCSLLDKYDLQKNEW 414
           CI KW +LREGQE+LAH+ LA+PSF  ELY+CINF ETIEEFESSW S++DKYDL ++EW
Sbjct: 331 CINKWDVLREGQEKLAHVCLAYPSFQVELYNCINFTETIEEFESSWSSVIDKYDLGRHEW 390

Query: 415 LHAVYNARRQWAPVYFRGTFFAALSSNQGIS-SFFDGYVHQQTTIPLFFKQYERALENSR 473
           L+++YNAR QW PVYFR +FFAA+  +QG S SFFDGYV+QQTT+P+FF+ YERA+E+  
Sbjct: 391 LNSLYNARAQWVPVYFRDSFFAAVFPSQGYSGSFFDGYVNQQTTLPMFFRLYERAMESWF 450

Query: 474 EKEIELDYDTICTTPVLKTPSPMEQQAANLYTKKVFAKFQEELVETFVYTANKIEGDGVL 533
           E EIE D DT+ T PVLKTPSPME QAANL+T+K+F KFQEELVETF +TAN+IE DG  
Sbjct: 451 EMEIEADLDTVNTPPVLKTPSPMENQAANLFTRKIFGKFQEELVETFAHTANRIEDDGTT 510

Query: 534 SKFRVAKYEQDDKAYIVSFS--EMKASCSCQMFEYSGILCRHILTVFTVTNVLTLPSHYI 591
           S FRVA +E D+KAYIV+F   EM+A+CSCQMFE+SGILCRH+LTVFTVTN+LTLP HYI
Sbjct: 511 STFRVANFENDNKAYIVTFCYPEMRANCSCQMFEHSGILCRHVLTVFTVTNILTLPPHYI 570

Query: 592 LKRWTRNAKSSIGLDEQNTDTQGIETLTLRFNKLCQEAIKYAEVGALAVETYNVAISALK 651
           L+RWTRNAKS + LDE  ++  G ++   R+N LC+EAIKYAE GA+  E YN+A+  L+
Sbjct: 571 LRRWTRNAKSMVELDEHVSEN-GHDSSIHRYNHLCREAIKYAEEGAITAEAYNIALGQLR 629

Query: 652 EAGKKVLAVKKNVAKISPPSSQVVLYSQEDSNKKTPPSVPEMIPSLWPWQEAMPHRFNLN 711
           E GKKV  V+K + + +PPSS        D   KT  S  +  P LWP Q+ M  RFNLN
Sbjct: 630 EGGKKVSVVRKRIGRAAPPSSHGGGIGSGD---KTSLSAADTTPLLWPRQDEMIRRFNLN 686

Query: 712 DSGV---SVSDLNQPSMVPVSFHRDCGTPDSTVVLTCFKSMTWVIENKNSTSASKVAVIN 768
           D G    SVSDLN P M PVS HRD   P++ V L C KS+TW +E+KN+    +VAVIN
Sbjct: 687 DGGARAQSVSDLNLPRMAPVSLHRDDTAPENMVALPCLKSLTWGMESKNTMPGGRVAVIN 746

Query: 769 LKLQDYGKKPSGETEVQFRLTKTTLEPMLRSMAYISQQLSAPANKVAVINLKLQDTKTTS 828
           LKL DY K PS + +V+F+L+  TLEPMLRSMAYIS+QLS+PAN+VAVINLKLQDT+TT+
Sbjct: 747 LKLHDYRKFPSADMDVKFQLSSVTLEPMLRSMAYISEQLSSPANRVAVINLKLQDTETTT 806

Query: 829 GEAEVKFQVSRDTLGSMLRSLAYIREQL 856
           GE+EVKFQVSRDTLG+MLRS+AYIREQL
Sbjct: 807 GESEVKFQVSRDTLGAMLRSMAYIREQL 834
Putative transcription activator involved in regulating light control of development.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SZL8|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1 Back     alignment and function description
>sp|Q9SZL7|FRS9_ARATH Protein FAR1-RELATED SEQUENCE 9 OS=Arabidopsis thaliana GN=FRS9 PE=2 SV=2 Back     alignment and function description
>sp|Q9M8J3|FRS7_ARATH Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana GN=FRS7 PE=2 SV=1 Back     alignment and function description
>sp|Q9SWG3|FAR1_ARATH Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana GN=FAR1 PE=1 SV=1 Back     alignment and function description
>sp|Q3E7I5|FRS12_ARATH Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana GN=FRS12 PE=2 SV=1 Back     alignment and function description
>sp|Q9LIE5|FHY3_ARATH Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Arabidopsis thaliana GN=FHY3 PE=1 SV=1 Back     alignment and function description
>sp|Q6NQJ7|FRS4_ARATH Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana GN=FRS4 PE=2 SV=2 Back     alignment and function description
>sp|Q3EBQ3|FRS2_ARATH Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis thaliana GN=FRS2 PE=2 SV=1 Back     alignment and function description
>sp|Q9SSQ4|FRS6_ARATH Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis thaliana GN=FRS6 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query856
359487094854 PREDICTED: protein FAR1-RELATED SEQUENCE 0.992 0.995 0.793 0.0
147783588881 hypothetical protein VITISV_039640 [Viti 0.992 0.964 0.762 0.0
356523487855 PREDICTED: protein FAR1-RELATED SEQUENCE 0.994 0.995 0.727 0.0
225436023883 PREDICTED: protein FAR1-RELATED SEQUENCE 0.991 0.961 0.657 0.0
449452664876 PREDICTED: protein FAR1-RELATED SEQUENCE 0.987 0.964 0.645 0.0
147790734 1002 hypothetical protein VITISV_002225 [Viti 0.983 0.840 0.631 0.0
224104917837 predicted protein [Populus trichocarpa] 0.933 0.954 0.644 0.0
356577418854 PREDICTED: protein FAR1-RELATED SEQUENCE 0.960 0.962 0.607 0.0
359481320894 PREDICTED: protein FAR1-RELATED SEQUENCE 0.952 0.911 0.603 0.0
312283081854 unnamed protein product [Thellungiella h 0.925 0.927 0.611 0.0
>gi|359487094|ref|XP_002272915.2| PREDICTED: protein FAR1-RELATED SEQUENCE 3-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1441 bits (3730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 678/854 (79%), Positives = 754/854 (88%), Gaps = 4/854 (0%)

Query: 6   VEVDGEKGDDPVATNAEFDKSKKQNVTENSSEIEVTNHDNGESSKPYVGMEFDSEDAAKT 65
           V+++G+  +     +AE +K ++QN+ EN+++ EV++ D+   +KP+V MEF+SE+AAKT
Sbjct: 2   VDMEGQNREKCALAHAEPNKGERQNMIENATQREVSSQDDDGGAKPHVAMEFESEEAAKT 61

Query: 66  FYDAYARRMGFSTHVGPFTRAKPDGPIITWDFACSREVFKRKNVESCNAVLRIERKDSEK 125
           FYD YARR+GFSTHVG F+R KPDGPII+WDFACSREVFKRKNVESCNA+LRIERKDS+ 
Sbjct: 62  FYDQYARRVGFSTHVGQFSRTKPDGPIISWDFACSREVFKRKNVESCNAMLRIERKDSDN 121

Query: 126 WTVTKFVEDHNHSMVTPNKVQYLRPRRHFAGATKNVAEALDVSGDVYITTDGNHLSYEP- 184
           W VTKFVEDHNHS +TP+KV YLRPRRHFAG TK+VAE  D   D+Y++ DGNH+SYEP 
Sbjct: 122 WIVTKFVEDHNHSTITPSKVHYLRPRRHFAGTTKSVAEPYDAPSDIYVSIDGNHVSYEPI 181

Query: 185 NSIRNSLPVDPSRSTRNMGPVNYLRQPSRTRSLGRDAQNLLNYFKKMQAENPGFYYAIQL 244
             + N+ P++P+   R++GP NY+R P+R R+LGRDAQNLLNYFKKMQAENPGFYYAIQL
Sbjct: 182 RGVGNASPLEPNLPARSIGPANYVR-PTRKRTLGRDAQNLLNYFKKMQAENPGFYYAIQL 240

Query: 245 DDDNRMTNVFWADARSRMAYNHFSDAVIFDTMYRPNQYQVPFAPFTGVNHHGQMVLFGCA 304
           DDDNRMTNVFWADARSR AYN+F DAVIFDTMYRPNQ+QVPFAPFTGVNHHGQMVLFGCA
Sbjct: 241 DDDNRMTNVFWADARSRTAYNYFGDAVIFDTMYRPNQFQVPFAPFTGVNHHGQMVLFGCA 300

Query: 305 LLLDESEASFTWLFRTWLSAMNDRPPVSITTDQDRAIQVAVAQVLPETCHCICKWHILRE 364
           LLLDESE+SFTWLF+TWLSAMND PPVSITTDQDRAIQVAVA V PET HCICKWHILRE
Sbjct: 301 LLLDESESSFTWLFKTWLSAMNDCPPVSITTDQDRAIQVAVAHVFPETRHCICKWHILRE 360

Query: 365 GQERLAHIYLAHPSFYGELYSCINFCETIEEFESSWCSLLDKYDLQKNEWLHAVYNARRQ 424
           GQERLAHIYLAHPSFYGELYSCINF ETIE+FESSW SLLD+YDLQKNEWL AVYNARRQ
Sbjct: 361 GQERLAHIYLAHPSFYGELYSCINFSETIEDFESSWASLLDRYDLQKNEWLQAVYNARRQ 420

Query: 425 WAPVYFRGTFFAALSSNQGISSFFDGYVHQQTTIPLFFKQYERALENSREKEIELDYDTI 484
           WAPVYFRGTFFAA+SSNQG+SSFFDGYV+QQTTIP+FFKQYERALENS EKEIE DYDTI
Sbjct: 421 WAPVYFRGTFFAAISSNQGVSSFFDGYVNQQTTIPVFFKQYERALENSLEKEIEADYDTI 480

Query: 485 CTTPVLKTPSPMEQQAANLYTKKVFAKFQEELVETFVYTANKIEGDGVLSKFRVAKYEQD 544
           CT PVLKTPSPMEQQAANLYTKKVFAKFQEELVETFVYTANK+E DGV SK+RVAKYE D
Sbjct: 481 CTNPVLKTPSPMEQQAANLYTKKVFAKFQEELVETFVYTANKVEDDGVASKYRVAKYELD 540

Query: 545 DKAYIVSF--SEMKASCSCQMFEYSGILCRHILTVFTVTNVLTLPSHYILKRWTRNAKSS 602
            KAY+V+   SEMKASCSCQMFEYSGILCRHILTVFTVTNVLTLP HYILKRWTRNAK+ 
Sbjct: 541 HKAYMVTLNVSEMKASCSCQMFEYSGILCRHILTVFTVTNVLTLPFHYILKRWTRNAKTG 600

Query: 603 IGLDEQNTDTQGIETLTLRFNKLCQEAIKYAEVGALAVETYNVAISALKEAGKKVLAVKK 662
           +G DEQ  D  GIE+LT+RFN LC+EAIKYAE GA+AV+TYN A+  L+E GKK+ AVKK
Sbjct: 601 VGSDEQELDQHGIESLTVRFNNLCREAIKYAEEGAIAVDTYNAAMGVLREGGKKIAAVKK 660

Query: 663 NVAKISPPSSQVVLYSQEDSNKKTPPSVPEMIPSLWPWQEAMPHRFNLNDSGVSVSDLNQ 722
            VAKI PP+SQ    +QEDSNKK+P S  E+ PSLWPWQ+AMPHRFNLND GV V+DLNQ
Sbjct: 661 VVAKIIPPTSQGSGNNQEDSNKKSPVSASEIAPSLWPWQDAMPHRFNLNDIGVPVADLNQ 720

Query: 723 PSMVPVSFHRDCGTPDSTVVLTCFKSMTWVIENKNSTSASKVAVINLKLQDYGKKPSGET 782
           PSM PVS H D G  D+ VVLTCFKSMTWVIENKNST A KVAVINLKLQDYGK P GET
Sbjct: 721 PSMAPVSIHHDGGPSDNPVVLTCFKSMTWVIENKNSTPAGKVAVINLKLQDYGKSPLGET 780

Query: 783 EVQFRLTKTTLEPMLRSMAYISQQLSAPANKVAVINLKLQDTKTTSGEAEVKFQVSRDTL 842
           EVQFRLT+ TLEPMLRSMAYISQQLS PAN+VAVINLKLQDTKTTSGE EVKFQVSRDTL
Sbjct: 781 EVQFRLTRVTLEPMLRSMAYISQQLSTPANRVAVINLKLQDTKTTSGETEVKFQVSRDTL 840

Query: 843 GSMLRSLAYIREQL 856
           GSMLRS+AYIREQL
Sbjct: 841 GSMLRSMAYIREQL 854

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147783588|emb|CAN65848.1| hypothetical protein VITISV_039640 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356523487|ref|XP_003530369.1| PREDICTED: protein FAR1-RELATED SEQUENCE 3-like [Glycine max] Back     alignment and taxonomy information
>gi|225436023|ref|XP_002270441.1| PREDICTED: protein FAR1-RELATED SEQUENCE 3 [Vitis vinifera] gi|296083973|emb|CBI24361.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449452664|ref|XP_004144079.1| PREDICTED: protein FAR1-RELATED SEQUENCE 3-like [Cucumis sativus] gi|449528099|ref|XP_004171044.1| PREDICTED: protein FAR1-RELATED SEQUENCE 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|147790734|emb|CAN70262.1| hypothetical protein VITISV_002225 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224104917|ref|XP_002313618.1| predicted protein [Populus trichocarpa] gi|222850026|gb|EEE87573.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356577418|ref|XP_003556823.1| PREDICTED: protein FAR1-RELATED SEQUENCE 3-like [Glycine max] Back     alignment and taxonomy information
>gi|359481320|ref|XP_002278883.2| PREDICTED: protein FAR1-RELATED SEQUENCE 3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|312283081|dbj|BAJ34406.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query856
TAIR|locus:2059304851 FRS3 "FAR1-related sequence 3" 0.767 0.772 0.616 2.3e-222
TAIR|locus:2121060788 FRS5 "FAR1-related sequence 5" 0.689 0.748 0.460 7.4e-153
TAIR|locus:2121003545 FRS9 "FAR1-related sequence 9" 0.538 0.845 0.478 2.7e-116
TAIR|locus:2144930788 FRS12 "FAR1-related sequence 1 0.514 0.558 0.401 6.3e-110
TAIR|locus:2082420764 FRS7 "FAR1-related sequence 7" 0.508 0.569 0.403 6.4e-108
TAIR|locus:2129665827 FAR1 "FAR-RED IMPAIRED RESPONS 0.723 0.748 0.360 1.9e-106
TAIR|locus:2090394839 FHY3 "far-red elongated hypoco 0.510 0.520 0.363 4.3e-94
TAIR|locus:2062606807 FRS2 "FAR1-related sequence 2" 0.502 0.532 0.352 1.8e-93
TAIR|locus:2014639732 FRS4 "FAR1-related sequence 4" 0.674 0.788 0.338 1.1e-92
TAIR|locus:2035144703 FRS6 "FAR1-related sequence 6" 0.703 0.856 0.302 3.9e-76
TAIR|locus:2059304 FRS3 "FAR1-related sequence 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2147 (760.8 bits), Expect = 2.3e-222, P = 2.3e-222
 Identities = 411/667 (61%), Positives = 503/667 (75%)

Query:   196 SRSTRNMGPVNYLRQPSRTRSLGRDAQNLLNYFKKMQAENPGFYYAIQLDDDNRMTNVFW 255
             S    + G  N     +  R++GRDA NLL YFK+MQAENPGF+YA+QLD+DN+M+NVFW
Sbjct:   172 SMDANSRGARNASMATNTKRTIGRDAHNLLEYFKRMQAENPGFFYAVQLDEDNQMSNVFW 231

Query:   256 ADARSRMAYNHFSDAVIFDTMYRPNQYQVPFAPFTGVNHHGQMVLFGCALLLDESEASFT 315
             AD+RSR+AY HF D V  DT YR NQ++VPFAPFTGVNHHGQ +LFGCAL+LDES+ SF 
Sbjct:   232 ADSRSRVAYTHFGDTVTLDTRYRCNQFRVPFAPFTGVNHHGQAILFGCALILDESDTSFI 291

Query:   316 WLFRTWLSAMNDRPPVSITTDQDRAIQVAVAQVLPETCHCICKWHILREGQERLAHIYLA 375
             WLF+T+L+AM D+PPVS+ TDQDRAIQ+A  QV P   HCI KW +LREGQE+LAH+ LA
Sbjct:   292 WLFKTFLTAMRDQPPVSLVTDQDRAIQIAAGQVFPGARHCINKWDVLREGQEKLAHVCLA 351

Query:   376 HPSFYGELYSCINFCETIEEFESSWCSLLDKYDLQKNEWLHAVYNARRQWAPVYFRGTFF 435
             +PSF  ELY+CINF ETIEEFESSW S++DKYDL ++EWL+++YNAR QW PVYFR +FF
Sbjct:   352 YPSFQVELYNCINFTETIEEFESSWSSVIDKYDLGRHEWLNSLYNARAQWVPVYFRDSFF 411

Query:   436 AALSSNQGIS-SFFDGYVHQQTTIPLFFKQYERALENSREKEIELDYDTICTTPVLKTPS 494
             AA+  +QG S SFFDGYV+QQTT+P+FF+ YERA+E+  E EIE D DT+ T PVLKTPS
Sbjct:   412 AAVFPSQGYSGSFFDGYVNQQTTLPMFFRLYERAMESWFEMEIEADLDTVNTPPVLKTPS 471

Query:   495 PMEQQAANLYTKKVFAKFQEELVETFVYTANKIEGDGVLSKFRVAKYEQDDKAYIVSFS- 553
             PME QAANL+T+K+F KFQEELVETF +TAN+IE DG  S FRVA +E D+KAYIV+F  
Sbjct:   472 PMENQAANLFTRKIFGKFQEELVETFAHTANRIEDDGTTSTFRVANFENDNKAYIVTFCY 531

Query:   554 -EMKASCSCQMFEYSGILCRHIXXXXXXXXXXXXPSHYILKRWTRNAKSSIGLDEQNTDT 612
              EM+A+CSCQMFE+SGILCRH+            P HYIL+RWTRNAKS + LDE  ++ 
Sbjct:   532 PEMRANCSCQMFEHSGILCRHVLTVFTVTNILTLPPHYILRRWTRNAKSMVELDEHVSEN 591

Query:   613 QGIETLTLRFNKLCQEAIKYAEVGALAVETYNVAISALKEXXXXXXXXXXXXXXISPPSS 672
              G ++   R+N LC+EAIKYAE GA+  E YN+A+  L+E               +PPSS
Sbjct:   592 -GHDSSIHRYNHLCREAIKYAEEGAITAEAYNIALGQLREGGKKVSVVRKRIGRAAPPSS 650

Query:   673 QVVLYSQEDSNKKTPPSVPEMIPSLWPWQEAMPHRFNLNDSGV---SVSDLNQPSMVPVS 729
                      S  KT  S  +  P LWP Q+ M  RFNLND G    SVSDLN P M PVS
Sbjct:   651 HG---GGIGSGDKTSLSAADTTPLLWPRQDEMIRRFNLNDGGARAQSVSDLNLPRMAPVS 707

Query:   730 FHRDCGTPDSTVVLTCFKSMTWVIENKNSTSASKVAVINLKLQDYGKKPSGETEVQFRLT 789
              HRD   P++ V L C KS+TW +E+KN+    +VAVINLKL DY K PS + +V+F+L+
Sbjct:   708 LHRDDTAPENMVALPCLKSLTWGMESKNTMPGGRVAVINLKLHDYRKFPSADMDVKFQLS 767

Query:   790 KTTLEPMLRSMAYISQQLSAPANKVAVINLKLQDTKTTSGEAEVKFQVSRDTLGSMLRSL 849
               TLEPMLRSMAYIS+QLS+PAN+VAVINLKLQDT+TT+GE+EVKFQVSRDTLG+MLRS+
Sbjct:   768 SVTLEPMLRSMAYISEQLSSPANRVAVINLKLQDTETTTGESEVKFQVSRDTLGAMLRSM 827

Query:   850 AYIREQL 856
             AYIREQL
Sbjct:   828 AYIREQL 834
GO:0005634 "nucleus" evidence=ISM
GO:0008270 "zinc ion binding" evidence=IEA
GO:0009639 "response to red or far red light" evidence=ISS
GO:0009506 "plasmodesma" evidence=IDA
GO:0006635 "fatty acid beta-oxidation" evidence=RCA
GO:0016558 "protein import into peroxisome matrix" evidence=RCA
TAIR|locus:2121060 FRS5 "FAR1-related sequence 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121003 FRS9 "FAR1-related sequence 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144930 FRS12 "FAR1-related sequence 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082420 FRS7 "FAR1-related sequence 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2129665 FAR1 "FAR-RED IMPAIRED RESPONSE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090394 FHY3 "far-red elongated hypocotyls 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062606 FRS2 "FAR1-related sequence 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2014639 FRS4 "FAR1-related sequence 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035144 FRS6 "FAR1-related sequence 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9ZVC9FRS3_ARATHNo assigned EC number0.57480.96020.9659yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query856
PLN03097846 PLN03097, FHY3, Protein FAR-RED ELONGATED HYPOCOTY 1e-148
pfam1055188 pfam10551, MULE, MULE transposase domain 4e-27
pfam0310190 pfam03101, FAR1, FAR1 DNA-binding domain 1e-20
smart0057528 smart00575, ZnF_PMZ, plant mutator transposase zin 5e-08
pfam0443438 pfam04434, SWIM, SWIM zinc finger 8e-08
>gnl|CDD|178645 PLN03097, FHY3, Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional Back     alignment and domain information 
 Score =  456 bits (1174), Expect = e-148
 Identities = 244/714 (34%), Positives = 374/714 (52%), Gaps = 80/714 (11%)

Query: 34  NSSEIEVTNHDNGESSKPYVGMEFDSEDAAKTFYDAYARRMGFSTHVGPFTRAKPDGPII 93
           NS   E+       + +P  GMEF+S   A +FY  YAR MGF+T +    R+K     I
Sbjct: 57  NSPTGELVEFKEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFI 116

Query: 94  TWDFACSREVFKRKNVES--------------------------CNAVLRIERKDSEKWT 127
              FACSR   KR+  +S                          C A + ++R+   KW 
Sbjct: 117 DAKFACSRYGTKREYDKSFNRPRARQTKQDPENGTGRRSCAKTDCKASMHVKRRPDGKWV 176

Query: 128 VTKFVEDHNHSMVTPNKVQYLRPRRHFAGATKNVAEALDVSGDVYITTDGNHLSYEPNSI 187
           +  FV++HNH ++ P +    + R+ +A   +  AE  +V G          L  +  S 
Sbjct: 177 IHSFVKEHNHELL-PAQAVSEQTRKMYAAMARQFAEYKNVVG----------LKNDSKS- 224

Query: 188 RNSLPVDPSRSTRNMGPVNYLRQPSRTRSLGRDAQNLLNYFKKMQAENPGFYYAIQLDDD 247
                 D  R        N   +         D + LL++F +MQ  N  F+YA+ L +D
Sbjct: 225 ----SFDKGR--------NLGLEAG-------DTKILLDFFTQMQNMNSNFFYAVDLGED 265

Query: 248 NRMTNVFWADARSRMAYNHFSDAVIFDTMYRPNQYQVPFAPFTGVNHHGQMVLFGCALLL 307
            R+ N+FW DA+SR  Y +FSD V FDT Y  N+Y++P A F GVN H Q +L GCAL+ 
Sbjct: 266 QRLKNLFWVDAKSRHDYGNFSDVVSFDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALIS 325

Query: 308 DESEASFTWLFRTWLSAMNDRPPVSITTDQDRAIQVAVAQVLPETCHCICKWHILREGQE 367
           DES A+++WL +TWL AM  + P  I TDQD+A++  +++V P   HC   WHIL +  E
Sbjct: 326 DESAATYSWLMQTWLRAMGGQAPKVIITDQDKAMKSVISEVFPNAHHCFFLWHILGKVSE 385

Query: 368 RLAHIYLAHPSFYGELYSCINFCETIEEFESSWCSLLDKYDLQKNEWLHAVYNARRQWAP 427
            L  +   H +F  +   CI    T EEF   W  +LD+++L+++EW+ ++Y  R+QW P
Sbjct: 386 NLGQVIKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQWVP 445

Query: 428 VYFRGTFFAALSSNQ---GISSFFDGYVHQQTTIPLFFKQYERALENSREKEIELDYDTI 484
            Y R  F A +S+ Q    I++FFD YVH++TT+  F KQYE  L++  E+E + D DT 
Sbjct: 446 TYMRDAFLAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTW 505

Query: 485 CTTPVLKTPSPMEQQAANLYTKKVFAKFQEELVETFVYTANKIEGDGVLSKFRVAKYEQD 544
              P LK+PSP+E+  + +YT  VF KFQ E++            D     FRV  +E+ 
Sbjct: 506 NKQPALKSPSPLEKSVSGVYTHAVFKKFQVEVLGAVACHPKMESQDETSITFRVQDFEK- 564

Query: 545 DKAYIVSFSEMKA--SCSCQMFEYSGILCRHILTVFTVTNVLTLPSHYILKRWTRNAKSS 602
           ++ + V++++ K   SC C++FEY G LCRH L V  +  +  +PS YILKRWT++AKS 
Sbjct: 565 NQDFTVTWNQTKLEVSCICRLFEYKGYLCRHALVVLQMCQLSAIPSQYILKRWTKDAKSR 624

Query: 603 IGLDEQNTDTQGIETLTLRFNKLCQEAIKYAEVGALAVETYNVAISALKEAGKKVLAVK- 661
             L E+   ++ +++   R+N LCQ A+K +E  +L+ E+YN+A  AL+EA    +++  
Sbjct: 625 HLLGEE---SEQVQSRVQRYNDLCQRALKLSEEASLSQESYNIAFRALEEAFGNCISMNN 681

Query: 662 --KNVAKISPPSSQVVLYSQED--------SNKKTPPSVPEMIPSLWPWQEAMP 705
             K++ +     +  +L  ++D        +NKK  P+    +      QE   
Sbjct: 682 SNKSLVEAGTSPTHGLLCIEDDNQSRSMTKTNKKKNPTKKRKVN---SEQEVTT 732

Length = 846
>gnl|CDD|220806 pfam10551, MULE, MULE transposase domain Back     alignment and domain information
>gnl|CDD|217369 pfam03101, FAR1, FAR1 DNA-binding domain Back     alignment and domain information
>gnl|CDD|128845 smart00575, ZnF_PMZ, plant mutator transposase zinc finger Back     alignment and domain information
>gnl|CDD|218087 pfam04434, SWIM, SWIM zinc finger Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 856
PLN03097846 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provis 100.0
PF1055193 MULE: MULE transposase domain; InterPro: IPR018289 99.83
PF0310191 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 99.66
PF00872381 Transposase_mut: Transposase, Mutator family; Inte 99.2
PF08731111 AFT: Transcription factor AFT; InterPro: IPR014842 98.74
smart0057528 ZnF_PMZ plant mutator transposase zinc finger. 98.67
PF0310867 DBD_Tnp_Mut: MuDR family transposase; InterPro: IP 98.5
COG3328379 Transposase and inactivated derivatives [DNA repli 98.19
cd04757108 Commd9 COMM_Domain containing protein 9. The COMM 98.08
PF0443440 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc f 98.01
cd04757108 Commd9 COMM_Domain containing protein 9. The COMM 97.93
cd04749174 Commd1_MURR1 COMM_Domain containing protein 1, als 94.09
PF01610249 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Aut 93.82
cd04749174 Commd1_MURR1 COMM_Domain containing protein 1, als 90.25
PF0310660 WRKY: WRKY DNA -binding domain; InterPro: IPR00365 90.09
cd0474887 Commd COMM_Domain, a family of domains found at th 89.23
PF13610140 DDE_Tnp_IS240: DDE domain 87.68
PF04684496 BAF1_ABF1: BAF1 / ABF1 chromatin reorganising fact 87.43
PF04937153 DUF659: Protein of unknown function (DUF 659); Int 84.14
PF00665120 rve: Integrase core domain; InterPro: IPR001584 In 83.28
>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional Back     alignment and domain information 
Probab=100.00  E-value=4.3e-129  Score=1152.04  Aligned_cols=627  Identities=35%  Similarity=0.673  Sum_probs=550.7

Q ss_pred             cCCCCCCCCCCCCCeeCCHHHHHHHHHHHhhhcCcEEEEcceeccCCCCCeEEEEeecCcccccc---------------
Q 035792           42 NHDNGESSKPYVGMEFDSEDAAKTFYDAYARRMGFSTHVGPFTRAKPDGPIITWDFACSREVFKR---------------  106 (856)
Q Consensus        42 ~~~~~~~~~P~vG~~F~S~eea~~fyn~YA~~~GF~vr~~~s~r~k~~g~~~~~~f~CsreG~~R---------------  106 (856)
                      +.+++...+|.+||+|+|+|||++||+.||++.||+||++++++++.+|.++.++|+|+|+|++|               
T Consensus        65 ~~~~~~~~~P~vGMeF~S~eeA~~FYn~YA~~~GFsVRi~~srrsk~~~~ii~r~fvCsreG~~~~~~~~~~~~~~~~~k  144 (846)
T PLN03097         65 EFKEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQTK  144 (846)
T ss_pred             cccCCCCccCcCCCeECCHHHHHHHHHHHHhhcCceEEeeceeccCCCCcEEEEEEEEcCCCCCcccccccccccccccc
Confidence            34567888999999999999999999999999999999999999999999999999999999752               


Q ss_pred             --------cc---ccCCcceeEEEEecCCcEEEEEeecCccCCCCCCCcccccCCCccCCchhhhhHHhhhccCCceecc
Q 035792          107 --------KN---VESCNAVLRIERKDSEKWTVTKFVEDHNHSMVTPNKVQYLRPRRHFAGATKNVAEALDVSGDVYITT  175 (856)
Q Consensus       107 --------kr---r~gCpa~i~v~~~~~~~W~V~~~~~eHNH~l~~~~~~~~l~~hR~ls~~~k~~i~~l~~~gi~~~~i  175 (856)
                              +|   |+||||+|+|++..+|+|+|+.|+.+|||+|.++..+.         ...+.....+..        
T Consensus       145 ~~~~~~~~rR~~tRtGC~A~m~Vk~~~~gkW~V~~fv~eHNH~L~p~~~~~---------~~~r~~~~~~~~--------  207 (846)
T PLN03097        145 QDPENGTGRRSCAKTDCKASMHVKRRPDGKWVIHSFVKEHNHELLPAQAVS---------EQTRKMYAAMAR--------  207 (846)
T ss_pred             cCcccccccccccCCCCceEEEEEEcCCCeEEEEEEecCCCCCCCCccccc---------hhhhhhHHHHHh--------
Confidence                    11   79999999999977999999999999999999775421         111111111110        


Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCCCCCcccccccccccccCccHHHHHHHHHHHhhcCCCcEEEEEecCCcceeEEEe
Q 035792          176 DGNHLSYEPNSIRNSLPVDPSRSTRNMGPVNYLRQPSRTRSLGRDAQNLLNYFKKMQAENPGFYYAIQLDDDNRMTNVFW  255 (856)
Q Consensus       176 ~~~~~~~~~g~~~~v~~~~k~r~~~~~Di~N~~~~~~r~~~~~~D~~~ll~~l~~~q~~nP~f~y~v~~d~~~~l~~ifw  255 (856)
                             +.++..+++++.       .|..|+..+..+....++|+++||+||+++|.+||+|||++++|++++|++|||
T Consensus       208 -------~~~~~~~v~~~~-------~d~~~~~~~~r~~~~~~gD~~~ll~yf~~~q~~nP~Ffy~~qlDe~~~l~niFW  273 (846)
T PLN03097        208 -------QFAEYKNVVGLK-------NDSKSSFDKGRNLGLEAGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFW  273 (846)
T ss_pred             -------hhhccccccccc-------hhhcchhhHHHhhhcccchHHHHHHHHHHHHhhCCCceEEEEEccCCCeeeEEe
Confidence                   122233444333       255666433323344569999999999999999999999999999999999999


Q ss_pred             cchhhhHHhhhcCceEEecccccCCCCCCccccEEEEeeCCcEEEEEEEeecCCchhhHHHHHHHHHHhcCCCCCeEEec
Q 035792          256 ADARSRMAYNHFSDAVIFDTMYRPNQYQVPFAPFTGVNHHGQMVLFGCALLLDESEASFTWLFRTWLSAMNDRPPVSITT  335 (856)
Q Consensus       256 a~~~s~~~y~~f~dVl~~D~Ty~tnky~~pL~~~vgvn~~g~~~~~g~all~~Et~es~~Wll~~f~~~m~~~~P~~iiT  335 (856)
                      +|++|+.+|.+|||||+||+||+||+|++||++|+|||||+|+++||||||.+|+.+||.|||++|+++|+|++|.+|||
T Consensus       274 aD~~sr~~Y~~FGDvV~fDTTY~tN~y~~Pfa~FvGvNhH~qtvlfGcaLl~dEt~eSf~WLf~tfl~aM~gk~P~tIiT  353 (846)
T PLN03097        274 VDAKSRHDYGNFSDVVSFDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQAPKVIIT  353 (846)
T ss_pred             ccHHHHHHHHhcCCEEEEeceeeccccCcEEEEEEEecCCCCeEEEEEEEcccCchhhHHHHHHHHHHHhCCCCCceEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccHHHHHHHHhhCCCcccccchhHHHHHHHHhhhhhccCChhHHHHHHHHHhccCCHHHHHHHHHHhhhhccchhhHHH
Q 035792          336 DQDRAIQVAVAQVLPETCHCICKWHILREGQERLAHIYLAHPSFYGELYSCINFCETIEEFESSWCSLLDKYDLQKNEWL  415 (856)
Q Consensus       336 D~d~al~~AI~~vFP~a~h~lC~~HI~kn~~~~l~~~~~~~~~~~~~~~~~v~~s~t~eeFe~~w~~l~~~~~l~~~~wL  415 (856)
                      |+|.+|++||++|||+|.|++|.|||++|+.++|+.++..++.|..+|++||+.+++++|||..|..|+++|+|++|+||
T Consensus       354 Dqd~am~~AI~~VfP~t~Hr~C~wHI~~~~~e~L~~~~~~~~~f~~~f~~cv~~s~t~eEFE~~W~~mi~ky~L~~n~WL  433 (846)
T PLN03097        354 DQDKAMKSVISEVFPNAHHCFFLWHILGKVSENLGQVIKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWM  433 (846)
T ss_pred             cCCHHHHHHHHHHCCCceehhhHHHHHHHHHHHhhHHhhhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccccHHH
Confidence            99999999999999999999999999999999999999889999999999999999999999999999999999999999


Q ss_pred             HHHHhcccccccccccCceeeccccccch---hhhhcccccccCCHHHHHHHHHHHHHHHHHhhhhhhhhcccccCcccC
Q 035792          416 HAVYNARRQWAPVYFRGTFFAALSSNQGI---SSFFDGYVHQQTTIPLFFKQYERALENSREKEIELDYDTICTTPVLKT  492 (856)
Q Consensus       416 ~~ly~~r~~Wa~ay~~~~f~~g~~s~~rs---ns~~k~~v~~~~sL~~fv~~~~~~l~~~~~ke~~~d~~s~~~~p~lkt  492 (856)
                      +.||+.|++|||+|+++.||+||++|+|+   |++|++|++++++|..|+++|+++++.++++|+++|+++.++.|.+++
T Consensus       434 ~~LY~~RekWapaY~k~~F~agm~sTqRSES~Ns~fk~yv~~~tsL~~Fv~qye~~l~~~~ekE~~aD~~s~~~~P~l~t  513 (846)
T PLN03097        434 QSLYEDRKQWVPTYMRDAFLAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKS  513 (846)
T ss_pred             HHHHHhHhhhhHHHhcccccCCcccccccccHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCccccc
Confidence            99999999999999999999999999998   999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHhhccHHHHHHHHHHHHhhccceEEEeecCceeEEEEEEEeeCCCceEEEEe--cCCceeeecCCcccCccc
Q 035792          493 PSPMEQQAANLYTKKVFAKFQEELVETFVYTANKIEGDGVLSKFRVAKYEQDDKAYIVSF--SEMKASCSCQMFEYSGIL  570 (856)
Q Consensus       493 ~~p~Ekqaa~~yT~~if~kfq~el~~s~~~~v~~~~~~g~~~~y~V~~~~~~~~~~~V~~--~~~~~sCsC~~fe~~Gip  570 (856)
                      ++|||+||+++||++||++||+|+..+..|.+....++|...+|.|...+. .+.|.|.+  .+..++|+|++||+.|||
T Consensus       514 ~~piEkQAs~iYT~~iF~kFQ~El~~~~~~~~~~~~~dg~~~~y~V~~~~~-~~~~~V~~d~~~~~v~CsC~kFE~~GIL  592 (846)
T PLN03097        514 PSPLEKSVSGVYTHAVFKKFQVEVLGAVACHPKMESQDETSITFRVQDFEK-NQDFTVTWNQTKLEVSCICRLFEYKGYL  592 (846)
T ss_pred             ccHHHHHHHHHhHHHHHHHHHHHHHHhhheEEeeeccCCceEEEEEEEecC-CCcEEEEEecCCCeEEeeccCeecCccc
Confidence            999999999999999999999999999999988887888889999987654 56899988  567899999999999999


Q ss_pred             ccchhhhhhccCcccCCccchhhhhcccccccCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 035792          571 CRHILTVFTVTNVLTLPSHYILKRWTRNAKSSIGLDEQNTDTQGIETLTLRFNKLCQEAIKYAEVGALAVETYNVAISAL  650 (856)
Q Consensus       571 CrHiL~Vl~~~~v~~IP~~YIlkRWtk~ak~~~~~~~~~~~~~~~~s~~~Ry~~L~~~~~~l~~~g~~s~E~y~~a~~~L  650 (856)
                      |+|||+||.+.||.+||++|||+||||+||.....+....   ...+.+.||+.||+.+++++++|+.|+|.|..|+++|
T Consensus       593 CrHaLkVL~~~~v~~IP~~YILkRWTKdAK~~~~~~~~~~---~~~~~~~Ryn~L~r~a~kla~~as~S~E~y~~a~~~L  669 (846)
T PLN03097        593 CRHALVVLQMCQLSAIPSQYILKRWTKDAKSRHLLGEESE---QVQSRVQRYNDLCQRALKLSEEASLSQESYNIAFRAL  669 (846)
T ss_pred             hhhHHHHHhhcCcccCchhhhhhhchhhhhhcccCccccc---cccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            9999999999999999999999999999998766543221   2345678999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCcccccccCCCCCCCCCCCCcCCCCCCCcccCCcc
Q 035792          651 KEAGKKVLAVKKNVAKISPPSSQVVLYSQEDSNKKTPPSVPEMIPSLWPWQEAMPHR  707 (856)
Q Consensus       651 ~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  707 (856)
                      +++.++++.++++...++.+++...+..-.    .-.+..+...++.-|+......|
T Consensus       670 ~e~~~~~~~~~n~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  722 (846)
T PLN03097        670 EEAFGNCISMNNSNKSLVEAGTSPTHGLLC----IEDDNQSRSMTKTNKKKNPTKKR  722 (846)
T ss_pred             HHHHHHHHHhhccCCCccccccccccCCcc----ccccccccccCcCCccccccccc
Confidence            999999999988877777555543321100    11344555666666665444333

>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ] Back     alignment and domain information
>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants Back     alignment and domain information
>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element Back     alignment and domain information
>PF08731 AFT: Transcription factor AFT; InterPro: IPR014842 AFT (activator of iron transcription) is an iron regulated transcriptional activator that regulates the expression of genes involved in iron homeostasis Back     alignment and domain information
>smart00575 ZnF_PMZ plant mutator transposase zinc finger Back     alignment and domain information
>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ] Back     alignment and domain information
>COG3328 Transposase and inactivated derivatives [DNA replication, recombination, and repair] Back     alignment and domain information
>cd04757 Commd9 COMM_Domain containing protein 9 Back     alignment and domain information
>PF04434 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>cd04757 Commd9 COMM_Domain containing protein 9 Back     alignment and domain information
>cd04749 Commd1_MURR1 COMM_Domain containing protein 1, also called Murr1 Back     alignment and domain information
>PF01610 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element Back     alignment and domain information
>cd04749 Commd1_MURR1 COMM_Domain containing protein 1, also called Murr1 Back     alignment and domain information
>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif Back     alignment and domain information
>cd04748 Commd COMM_Domain, a family of domains found at the C-terminus of HCarG, the copper metabolism gene MURR1 product, and related proteins Back     alignment and domain information
>PF13610 DDE_Tnp_IS240: DDE domain Back     alignment and domain information
>PF04684 BAF1_ABF1: BAF1 / ABF1 chromatin reorganising factor; InterPro: IPR006774 ABF1 is a sequence-specific DNA binding protein involved in transcription activation, gene silencing and initiation of DNA replication Back     alignment and domain information
>PF04937 DUF659: Protein of unknown function (DUF 659); InterPro: IPR007021 These are transposase-like proteins with no known function Back     alignment and domain information
>PF00665 rve: Integrase core domain; InterPro: IPR001584 Integrase comprises three domains capable of folding independently and whose three-dimensional structures are known Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query856
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-06
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 51.0 bits (121), Expect = 2e-06
 Identities = 63/439 (14%), Positives = 129/439 (29%), Gaps = 137/439 (31%)

Query: 453 HQQTTIPLFFKQYERALENSREKEIELDY-DTICTTP----VLKTPSPMEQQAANLYTKK 507
             +  + +F   +    +    K+++ D   +I +      ++ +   +        T +
Sbjct: 17  QYKDILSVFEDAFVDNFDC---KDVQ-DMPKSILSKEEIDHIIMSKDAVSG------TLR 66

Query: 508 VFAKF---QEELVETFVYTANKIEGDGVLSKFRVAKYEQDDKAYIVSFSEMKASCSCQMF 564
           +F      QEE+V+ FV    +I    ++S  +    EQ   + +            +M+
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK---TEQRQPSMMT-----------RMY 112

Query: 565 EYSGILCRHIL----TVFTVTNVLTLPSHYILKRWTRNAKSSIGLDEQNTDTQGIETLTL 620
                  R  L     VF   NV  L  +  L++     + +                  
Sbjct: 113 IE----QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK----------------- 151

Query: 621 RFNKLCQEAIKYAEVGALAVETYNVAISALKEAGKKVLA--------VKK---------N 663
                                  NV I  +  +GK  +A        V+          N
Sbjct: 152 -----------------------NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188

Query: 664 VAKISPPSS----QVVLYSQEDSNKKTPPSVPEMIPSLWPWQEAMPHRF----NLNDSGV 715
           +   + P +       L  Q D N  +       I       +A   R        +  +
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248

Query: 716 SVSDLNQPSMVPVSFHRDCGTPDSTVVLTCFKSMTWVIENKNSTSASKVAVINLKLQDYG 775
            + ++        +F+  C      ++ T FK +T      +  SA+    I+L      
Sbjct: 249 VLLNVQNAKAWN-AFNLSC----KILLTTRFKQVT------DFLSAATTTHISLDHHSMT 297

Query: 776 KKPSGETEVQFRLTKTTLEPMLRSMAYIS-QQLSAPANK-----VAVINLKLQDTKTTSG 829
                       LT   ++ +L        Q L           +++I   ++D   T  
Sbjct: 298 ------------LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345

Query: 830 EAEVKFQVSRDTLGSMLRS 848
             +    V+ D L +++ S
Sbjct: 346 NWK---HVNCDKLTTIIES 361
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query856
2ayd_A76 WRKY transcription factor 1; beta strands, zinc fi 91.43
1wj2_A78 Probable WRKY transcription factor 4; DNA-binding 85.48
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Back     alignment and structure
Probab=91.43  E-value=0.57  Score=39.19  Aligned_cols=56  Identities=23%  Similarity=0.390  Sum_probs=38.9

Q ss_pred             CcEEEEcceeccCCCCCeEEEEeecCccccccccccCCcceeEEEEec-CCcEEEEEeecCccCCC
Q 035792           75 GFSTHVGPFTRAKPDGPIITWDFACSREVFKRKNVESCNAVLRIERKD-SEKWTVTKFVEDHNHSM  139 (856)
Q Consensus        75 GF~vr~~~s~r~k~~g~~~~~~f~CsreG~~Rkrr~gCpa~i~v~~~~-~~~W~V~~~~~eHNH~l  139 (856)
                      ||..|+=--...+. ...-+..|.|+.        .||||+=.|.+.. +..-.++....+|||++
T Consensus        17 Gy~WRKYGQK~ikg-s~~PRsYYrCt~--------~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~   73 (76)
T 2ayd_A           17 GYRWRKYGQKSVKG-SPYPRSYYRCSS--------PGCPVKKHVERSSHDTKLLITTYEGKHDHDM   73 (76)
T ss_dssp             SSCEEEEEEECCTT-CSSCEEEEEECS--------TTCCCEEEEEECSSSTTEEEEEEESCCSSCC
T ss_pred             CchhhhCcccccCC-CCCceeEeEcCC--------CCCCceeeEEEECCCCCEEEEEEccCcCCCC
Confidence            66666622211221 122356789984        6999999999875 67788999999999986
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query856
d1wj2a_71 WRKY DNA-binding protein 4 {Thale cress (Arabidops 91.62
>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.62  E-value=0.11  Score=40.73  Aligned_cols=39  Identities=26%  Similarity=0.474  Sum_probs=32.8

Q ss_pred             EEEEeecCccccccccccCCcceeEEEEec-CCcEEEEEeecCccCCC
Q 035792           93 ITWDFACSREVFKRKNVESCNAVLRIERKD-SEKWTVTKFVEDHNHSM  139 (856)
Q Consensus        93 ~~~~f~CsreG~~Rkrr~gCpa~i~v~~~~-~~~W~V~~~~~eHNH~l  139 (856)
                      -+..|.|+.        .||+|+=.|.+.. ++.-.++....+|||++
T Consensus        30 pRsYYrCt~--------~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~   69 (71)
T d1wj2a_          30 PRSYYKCTT--------PGCGVRKHVERAATDPKAVVTTYEGKHNHDL   69 (71)
T ss_dssp             CEEEEEEEC--------SSCEEEEEEEEETTTTSEEEEEEESCCSSCC
T ss_pred             ceEEEEccc--------cCCCCcceEEEEcCCCCEEEEEEeeEeCCCC
Confidence            467789984        6899999999875 67788889999999975