Citrus Sinensis ID: 035818

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------57
IFSDVAGDITIVVDGESFLLHKFPLVSRSGKIRKMVADAKDSNSSKLELHNIPGGPQTFELAVKFCYGMNFEITTTNVASLRCAAEYLEMTEDYRDENLVARTEVYLNEVVVQSLEKSVEVLSICEMLPPVAEEVGIVNRCVEAVAVNACKEQLVSGLSRLDCNGESAELKSGCLEWWIEDLSALGIDYYQRVVCAMGRAGIRPDSITASLMHYAQASLKGIGKFQIWNPARMKSNRTMAENDQRTILETLVSLLPNEKSSSIPQNFLFGMLRMGIMVDASIACKLELERRIAFRLEMTGDSLFDVDTVHRILINFLQRIEDEDNDDCGYESEGLGSPGHGSLLKVGRLIDAYLAEIAPDPYLSLQKFIAMLEILPDYSRVIDDGLYRAIDIYLKAHPMLTEHECKKLCKFIDCQKLSQEASNHAAQNDRLPVQMAVRVLYFEQLRLQNALSGSSGDGFLSQRMSSGVPSAAMSPRDNYASLRRENRELKLEISRMRVRLSELEKEQMFMKQGMIDKSGNGKTFLTSISKGIGRIGIFNGPTGGKRQKSSRKSRGDGKTGRSRRYSVS
ccccccccEEEEEccEEEEEcHHHHccccHHHHHHHcccccccccEEEcccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccHHHHHHHccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccccccEEEEEccEEEEEccccccccHHHHHHHHHccccccccEEEcccccccHHHHHHHHHHHccEEEEEcHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccHHcccccccHHHHHHHHHHHcccccHHHHHHHHHHHcHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHccccccccccccccccccccccccccccccccccccc
ifsdvagditivvdgesfllhkfplvsrsgkIRKMVAdakdsnssklelhnipggpqtFELAVKFCYGMNFEITTTNVASLRCAAEYLEMTEDYRDENLVARTEVYLNEVVVQSLEKSVEVLSICemlppvaeeVGIVNRCVEAVAVNACKEQLVSGLsrldcngesaelkSGCLEWWIEDLSALGIDYYQRVVCAMgragirpdsITASLMHYAQASLKGIgkfqiwnparmksnrtmaeNDQRTILETLVSllpneksssipqnFLFGMLRMGIMVDASIACKLELERRIAFRLEmtgdslfdvDTVHRILINFLQRiedednddcgyeseglgspghgsllKVGRLIDAYLaeiapdpylSLQKFIAMLEilpdysrviDDGLYRAIDIYlkahpmlteHECKKLckfidcqklSQEASnhaaqndrlpVQMAVRVLYFEQLRLQNalsgssgdgflsqrmssgvpsaamsprdnyASLRRENRELKLEISRMRVRLSELEKEQMFMKQGmidksgngktFLTSISKgigrigifngptggkrqkssrksrgdgktgrsrrysvs
ifsdvagditivvdgesfllhkfplvsrsgkiRKMVADAkdsnssklelhnipggpQTFELAVKFCYGMNFEITTTNVASLRCAAEYLEMTEDYRDENLVARTEVYLNEVVVQSLEKSVEVLSICEMLPPVAEEVGIVNRCVEAVAVNACKEQLVSGLSRLDCNGESAELKSGCLEWWIEDLSALGIDYYQRVVCAMGRAGIRPDSITASLMHYAQASLKGIGKFQIWNPARMKSNRTMAENDQRTILETLVsllpnekssSIPQNFLFGMLRMGIMVDASIACKLELERRIAFRLEMtgdslfdvdTVHRILINFLQRIEDEDNDDCGYESeglgspghgsLLKVGRLIDAYLAEIAPDPYLSLQKFIAMLEILPDYSRVIDDGLYRAIDIYLKAHPMLTEHECKKLCKFIDCQKLSQEASnhaaqndrlpVQMAVRVLYFEQLRLQNALSGSSGDGFLSQRMSsgvpsaamsprdnyaslrRENRELKLEISRMRVRLSELEKEQMFMKqgmidksgngKTFLTSISKGigrigifngptggkrqkssrksrgdgktgrsrrysvs
IFSDVAGDITIVVDGESFLLHKFPLVSRSGKIRKMVADAKDSNSSKLELHNIPGGPQTFELAVKFCYGMNFEITTTNVASLRCAAEYLEMTEDYRDENLVARTEVYLNEVVVQSLEKSVEVLSICEMLPPVAEEVGIVNRCVEAVAVNACKEQLVSGLSRLDCNGESAELKSGCLEWWIEDLSALGIDYYQRVVCAMGRAGIRPDSITASLMHYAQASLKGIGKFQIWNPARMKSNRTMAENDQRTILETLVSLLPNEKSSSIPQNFLFGMLRMGIMVDASIACKLELERRIAFRLEMTGDSLFDVDTVHRILINFLQRIEDEDNDDCGYESEGLGSPGHGSLLKVGRLIDAYLAEIAPDPYLSLQKFIAMLEILPDYSRVIDDGLYRAIDIYLKAHPMLTEHECKKLCKFIDCQKLSQEASNHAAQNDRLPVQMAVRVLYFEQLRLQNALSGSSGDGFLSQRMSSGVPSAAMSPRDNYASLRRENRELKLEISRMRVRLSELEKEQMFMKQGMIDKSGNGKTFLTSISKGIGRIGIFNGPTGGKRQKSSRKSRGDGKTGRSRRYSVS
****VAGDITIVVDGESFLLHKFPLVSRS**********************IPGGPQTFELAVKFCYGMNFEITTTNVASLRCAAEYLEMTEDYRDENLVARTEVYLNEVVVQSLEKSVEVLSICEMLPPVAEEVGIVNRCVEAVAVNACKEQLVSGLSRLDCNGESAELKSGCLEWWIEDLSALGIDYYQRVVCAMGRAGIRPDSITASLMHYAQASLKGIGKFQIWNPA**************TILETLVSLL*******IPQNFLFGMLRMGIMVDASIACKLELERRIAFRLEMTGDSLFDVDTVHRILINFLQRIEDEDNDDCGY********GHGSLLKVGRLIDAYLAEIAPDPYLSLQKFIAMLEILPDYSRVIDDGLYRAIDIYLKAHPMLTEHECKKLCKFIDCQKLS***********RLPVQMAVRVLYFEQLRLQ*************************************************************************KTFLTSISKGIGRIGIFN*****************************
IFSDVAGDITIVVDGESFLLHKFPLVSRSGKIRK*************ELHNIPGGPQTFELAVKFCYGMNFEITTTNVASLRCAAEYLEMTEDYRDENLVARTEVYLNEVVVQSLEKSVEVLSICEMLPPVAEEVGIVNRCVEAVAVNACKEQLVS********************WWIEDLSALGIDYYQRVVCAMGRAGIRPDSITASLMHYAQASLKGIG*****************ENDQRTILETLVSLLPNEKSSSIPQNFLFGMLRMGIMVDASIACKLELERRIAFRLEMTGDSLFDVDTVHRILINF****************************KVGRLIDAYLAEIAPDPYLSLQKFIAMLEILPDYSRVIDDGLYRAIDIYLKA***********LCKFIDCQKLSQEASNHAAQNDRLPVQMAVRVLYFEQL***********************************************************************************************************************Y***
IFSDVAGDITIVVDGESFLLHKFPLVSRSGKIRKMV**********LELHNIPGGPQTFELAVKFCYGMNFEITTTNVASLRCAAEYLEMTEDYRDENLVARTEVYLNEVVVQSLEKSVEVLSICEMLPPVAEEVGIVNRCVEAVAVNACKEQLVSGLSRLDCNGESAELKSGCLEWWIEDLSALGIDYYQRVVCAMGRAGIRPDSITASLMHYAQASLKGIGKFQIWNPARMKSNRTMAENDQRTILETLVSLLPNEKSSSIPQNFLFGMLRMGIMVDASIACKLELERRIAFRLEMTGDSLFDVDTVHRILINFLQRIEDEDNDDCGYESEGLGSPGHGSLLKVGRLIDAYLAEIAPDPYLSLQKFIAMLEILPDYSRVIDDGLYRAIDIYLKAHPMLTEHECKKLCKFIDCQKLS********QNDRLPVQMAVRVLYFEQLRLQNALSGSSGDGFLS***************DNYASLRRENRELKLEISRMRVRLSELEKEQMFMKQGMIDKSGNGKTFLTSISKGIGRIGIFNGP***************************
***DVAGDITIVVDGESFLLHKFPLVSRSGKIRKMVADAKDSNSSKLELHNIPGGPQTFELAVKFCYGMNFEITTTNVASLRCAAEYLEMTEDYRDENLVARTEVYLNEVVVQSLEKSVEVLSICEMLPPVAEEVGIVNRCVEAVAVNACKEQLVSGLSR************GCLEWWIEDLSALGIDYYQRVVCAMGRAGIRPDSITASLMHYAQASLKGI******************ENDQRTILETLVSLLPNEKSSSIPQNFLFGMLRMGIMVDASIACKLELERRIAFRLEMTGDSLFDVDTVHRILINFLQRIE*****************GHGSLLKVGRLIDAYLAEIAPDPYLSLQKFIAMLEILPDYSRVIDDGLYRAIDIYLKAHPMLTEHECKKLCKFIDCQKLSQEASNHAAQNDRLPVQMAVRVLYFEQLRLQNALS**************************YASLRRENRELKLEISRMRVRLSELEKEQMFMKQGMID****************************************************
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IFSDVAGDITIVVDGESFLLHKFPLVSRSGKIRKMVADAKDSNSSKLELHNIPGGPQTFELAVKFCYGMNFEITTTNVASLRCAAEYLEMTEDYRDENLVARTEVYLNEVVVQSLEKSVEVLSICEMLPPVAEEVGIVNRCVEAVAVNACKEQLVSGLSRLDCNGESAELKSGCLEWWIEDLSALGIDYYQRVVCAMGRAGIRPDSITASLMHYAQASLKGIGKFQIWNPARMKSNRTMAENDQRTILETLVSLLPNEKSSSIPQNFLFGMLRMGIMVDASIACKLELERRIAFRLEMTGDSLFDVDTVHRILINFLQRIEDEDNDDCGYESEGLGSPGHGSLLKVGRLIDAYLAEIAPDPYLSLQKFIAMLEILPDYSRVIDDGLYRAIDIYLKAHPMLTEHECKKLCKFIDCQKLSQEASNHAAQNDRLPVQMAVRVLYFEQLRLQNALSGSSGDGFLSQRMSSGVPSAAMSPRDNxxxxxxxxxxxxxxxxxxxxxxxxxxxxQMFMKQGMIDKSGNGKTFLTSISKGIGRIGIFNGPTGGKRQKSSRKSRGDGKTGRSRRYSVS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query568 2.2.26 [Sep-21-2011]
Q9C9Z7617 BTB/POZ domain-containing yes no 0.978 0.901 0.647 0.0
Q9C9Z0582 Putative BTB/POZ domain-c no no 0.936 0.914 0.615 0.0
Q9FKB6614 BTB/POZ domain-containing no no 0.910 0.842 0.493 1e-152
Q9SA69634 BTB/POZ domain-containing no no 0.978 0.876 0.458 1e-139
O82253635 BTB/POZ domain-containing no no 0.973 0.870 0.443 1e-130
Q66GP0604 BTB/POZ domain-containing no no 0.950 0.894 0.414 1e-117
Q9S9Q9665 BTB/POZ domain-containing no no 0.915 0.781 0.377 5e-98
Q682S0593 Root phototropism protein no no 0.957 0.917 0.350 2e-96
Q9SN21526 Putative BTB/POZ domain-c no no 0.859 0.927 0.364 1e-91
Q9FNB3591 Putative BTB/POZ domain-c no no 0.882 0.847 0.374 1e-90
>sp|Q9C9Z7|Y3857_ARATH BTB/POZ domain-containing protein At3g08570 OS=Arabidopsis thaliana GN=At3g08570 PE=2 SV=2 Back     alignment and function desciption
 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/590 (64%), Positives = 457/590 (77%), Gaps = 34/590 (5%)

Query: 1   IFSDVAGDITIVVDGESFLLHKFPLVSRSGKIRKMVADAKDSNS--SKLELHNIPGGPQT 58
           IFSDVAGDITIVVDGESFLLHKFPLV+R GKIRKMVA+ K+S+S  S  EL + PGG +T
Sbjct: 30  IFSDVAGDITIVVDGESFLLHKFPLVARCGKIRKMVAEMKESSSNLSHTELRDFPGGSKT 89

Query: 59  FELAVKFCYGMNFEITTTNVASLRCAAEYLEMTEDYRDENLVARTEVYLNEVVVQSLEKS 118
           FELA+KFCYG+NFEIT +NV ++RCAA YLEMTED+++ENL+ARTE YL +V  +SLEKS
Sbjct: 90  FELAMKFCYGINFEITISNVVAIRCAAGYLEMTEDFKEENLIARTETYLEQVAFRSLEKS 149

Query: 119 VEVLSICEMLPP--VAEEVGIVNRCVEAVAVNACKEQLVSGLSRLDCNGESAELKSG-CL 175
           VEVL  CE L P  +AE   I +RCVEA+AVNAC+EQLV GLSRL+   ES ELK G   
Sbjct: 150 VEVLCSCETLYPQDIAETAHIPDRCVEAIAVNACREQLVLGLSRLNRGTESGELKRGDSP 209

Query: 176 EWWIEDLSALGIDYYQRVVCAMGRAGIRPDSITASLMHYAQASLKGIGKFQIWNPARMKS 235
           EWWIEDLSAL IDYY RVV AM R G+R +SI  SLMHYAQ SLKGI   +     R K 
Sbjct: 210 EWWIEDLSALRIDYYARVVSAMARTGLRSESIITSLMHYAQESLKGIRNCK----ERTKL 265

Query: 236 NRTMAENDQRTILETLVSLLPNEKSSSIPQNFLFGMLRMGIMVDASIACKLELERRIAFR 295
           +    EN+QR +LE +VSL PN+   ++P +FLFGMLR+GI ++ +I+C+LELERRIA +
Sbjct: 266 DSGTFENEQRNVLEAIVSLFPND---NVPLSFLFGMLRVGITINVAISCRLELERRIAQQ 322

Query: 296 LEMT------------GDSLFDVDTVHRILINFLQRIEDEDNDDCGY----ESEGL-GSP 338
           LE              GDS++DVDTVHRIL+ FL++IE+E+  D       E+E L GS 
Sbjct: 323 LETVSLDDLLIPVVRDGDSMYDVDTVHRILVCFLKKIEEEEEYDEDCCYENETENLTGSM 382

Query: 339 GHGSLLKVGRLIDAYLAEIAPDPYLSLQKFIAMLEILPDYSRVIDDGLYRAIDIYLKAHP 398
            H SLLKVGR++DAYLAEIAPDP LSL KF+A++EILPDY+RV+DDGLYRAID++LK HP
Sbjct: 383 CHSSLLKVGRIMDAYLAEIAPDPCLSLHKFMALIEILPDYARVMDDGLYRAIDMFLKGHP 442

Query: 399 MLTEHECKKLCKFIDCQKLSQEASNHAAQNDRLPVQMAVRVLYFEQLRLQNALSGSSGDG 458
            L E ECK LCKFID QKLSQEA NH AQNDRLP+QM VRVLY EQLR++N +SG SG+G
Sbjct: 443 SLNEQECKSLCKFIDTQKLSQEACNHVAQNDRLPMQMVVRVLYSEQLRMKNVMSGESGEG 502

Query: 459 FL--SQRMSSGVPSAAMSPRDNYASLRRENRELKLEISRMRVRLSELEKEQMFMKQGMID 516
            L  SQ+ SS  PS A+SPRD YASLRRENRELKLEISR+RVRL+ELEKEQ+ MKQGM++
Sbjct: 503 LLLSSQKHSSENPSRAVSPRDTYASLRRENRELKLEISRVRVRLTELEKEQILMKQGMME 562

Query: 517 KSGNGKTFLTSISKGIGRIGIF-NGPTGGKRQKSSR--KSRGDGKTGRSR 563
           KSG+G T LTS+SKGIGRI IF  GPT GK + ++R  KSR + KT RSR
Sbjct: 563 KSGHGGTLLTSLSKGIGRISIFGGGPTEGKLRNANRKSKSRLERKTVRSR 612
May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9C9Z0|Y3866_ARATH Putative BTB/POZ domain-containing protein At3g08660 OS=Arabidopsis thaliana GN=At3g08660 PE=3 SV=1 Back     alignment and function description
>sp|Q9FKB6|Y5880_ARATH BTB/POZ domain-containing protein At5g48800 OS=Arabidopsis thaliana GN=At5g48800 PE=1 SV=1 Back     alignment and function description
>sp|Q9SA69|Y1301_ARATH BTB/POZ domain-containing protein At1g03010 OS=Arabidopsis thaliana GN=At1g03010 PE=2 SV=1 Back     alignment and function description
>sp|O82253|SETH6_ARATH BTB/POZ domain-containing protein SETH6 OS=Arabidopsis thaliana GN=SETH6 PE=2 SV=1 Back     alignment and function description
>sp|Q66GP0|Y5738_ARATH BTB/POZ domain-containing protein At5g67385 OS=Arabidopsis thaliana GN=At5g67385 PE=2 SV=2 Back     alignment and function description
>sp|Q9S9Q9|Y1044_ARATH BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2 Back     alignment and function description
>sp|Q682S0|RPT2_ARATH Root phototropism protein 2 OS=Arabidopsis thaliana GN=RPT2 PE=1 SV=2 Back     alignment and function description
>sp|Q9SN21|Y3997_ARATH Putative BTB/POZ domain-containing protein At3g49970 OS=Arabidopsis thaliana GN=At3g49970 PE=3 SV=1 Back     alignment and function description
>sp|Q9FNB3|Y5360_ARATH Putative BTB/POZ domain-containing protein At5g13600 OS=Arabidopsis thaliana GN=At5g13600 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query568
255582014592 Root phototropism protein, putative [Ric 0.978 0.939 0.836 0.0
224140629550 predicted protein [Populus trichocarpa] 0.947 0.978 0.838 0.0
359480980636 PREDICTED: BTB/POZ domain-containing pro 0.998 0.891 0.805 0.0
356568248596 PREDICTED: BTB/POZ domain-containing pro 0.978 0.932 0.757 0.0
356532135596 PREDICTED: BTB/POZ domain-containing pro 0.978 0.932 0.756 0.0
357506707 704 BTB/POZ domain-containing protein [Medic 0.987 0.796 0.750 0.0
296085843493 unnamed protein product [Vitis vinifera] 0.794 0.914 0.781 0.0
125533186643 hypothetical protein OsI_34891 [Oryza sa 0.989 0.874 0.597 0.0
77548379643 transposon protein, putative, Mutator su 0.989 0.874 0.595 0.0
240255303617 phototropic-responsive NPH3-like protein 0.978 0.901 0.647 0.0
>gi|255582014|ref|XP_002531804.1| Root phototropism protein, putative [Ricinus communis] gi|223528538|gb|EEF30561.1| Root phototropism protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1011 bits (2614), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/581 (83%), Positives = 527/581 (90%), Gaps = 25/581 (4%)

Query: 1   IFSDVAGDITIVVDGESFLLHKFPLVSRSGKIRKMVADAKDSNSSKLELHNIPGGPQTFE 60
           IFSDVAGDITIVVDGESFLLHKFPLVSRSGKIRKMVADAKDSN SKLELHN+PGGP TFE
Sbjct: 24  IFSDVAGDITIVVDGESFLLHKFPLVSRSGKIRKMVADAKDSNISKLELHNLPGGPHTFE 83

Query: 61  LAVKFCYGMNFEITTTNVASLRCAAEYLEMTEDYRDENLVARTEVYLNEVVVQSLEKSVE 120
           LA+KFCYGMNFEITT NVA LRCAAEYLEMTEDYR+ENL+ RTE+YLN+VVVQSLEKSVE
Sbjct: 84  LAMKFCYGMNFEITTANVAHLRCAAEYLEMTEDYREENLIERTEIYLNDVVVQSLEKSVE 143

Query: 121 VLSICEMLPPVAEEVGIVNRCVEAVAVNACKEQLVSGLSRLDCNGESAELKSGCLEWWIE 180
           VLS CEMLPP AEEVGI NRC+EA+A+NACKEQLVSGLSRLDC+ ESAELKSGC+EWW+E
Sbjct: 144 VLSTCEMLPPTAEEVGIPNRCIEAIAINACKEQLVSGLSRLDCDNESAELKSGCIEWWVE 203

Query: 181 DLSALGIDYYQRVVCAMGRAGIRPDSITASLMHYAQASLKGIGKFQIWNPARMKSNRTMA 240
           DLS L IDYYQRV+CAMGR G+RPDSI ASLMHYAQ SLKGIGKFQIWNPA+MK + +M 
Sbjct: 204 DLSILKIDYYQRVICAMGRLGVRPDSIVASLMHYAQTSLKGIGKFQIWNPAKMKPSPSMG 263

Query: 241 ENDQRTILETLVSLLPNEKSSSIPQNFLFGMLRMGIMVDASIACKLELERRIAFRLEM-- 298
           ENDQ  ILE LVSL+P+EKSSSIP +FLFGMLRMGIM+DA+IAC+LELERRIAFRLEM  
Sbjct: 264 ENDQSLILEILVSLMPSEKSSSIPLSFLFGMLRMGIMLDATIACRLELERRIAFRLEMVS 323

Query: 299 ----------TGDSLFDVDTVHRILINFLQRIEDEDNDDCGYESEGLGSPGHGSLLKVGR 348
                     +GDSLFDVDTVHRIL+NFLQR+E+E+N+DCGYESEGLGSPGHGSLLKVGR
Sbjct: 324 LDDLLIPSIRSGDSLFDVDTVHRILVNFLQRVEEEENEDCGYESEGLGSPGHGSLLKVGR 383

Query: 349 LIDAYLAEIAPDPYLSLQKFIAMLEILPDYSRVIDDGLYRAIDIYLKAHPMLTEHECKKL 408
           LIDAYLAEIAPDPYLSL KFIAM+EILPDY+RVIDDGLYRAIDIYLKAHPML+EH+CKKL
Sbjct: 384 LIDAYLAEIAPDPYLSLLKFIAMIEILPDYARVIDDGLYRAIDIYLKAHPMLSEHDCKKL 443

Query: 409 CKFIDCQKLSQEASNHAAQNDRLPVQMAVRVLYFEQLRLQNALSGSSGDGFLSQRMSSGV 468
           CKFIDCQKLSQ+A NHAAQNDRLPVQM             NALSGSSGDGFLSQR+SSGV
Sbjct: 444 CKFIDCQKLSQDACNHAAQNDRLPVQMT------------NALSGSSGDGFLSQRISSGV 491

Query: 469 PSAAMSPRDNYASLRRENRELKLEISRMRVRLSELEKEQMFMKQGMIDKSGNGKTFLTSI 528
           PSAA+SPRDNYASLRRENRELKLEISRMRVRLSELEKEQM+MKQGMIDKSGNGKTF TSI
Sbjct: 492 PSAAISPRDNYASLRRENRELKLEISRMRVRLSELEKEQMYMKQGMIDKSGNGKTFFTSI 551

Query: 529 SKGIGRIGIFNGPTGGKRQKSSRKSRG-DGKTGRSRRYSVS 568
           SKGIGRIGIF+ P GG+RQKS RKSRG +GK GRSRR+SVS
Sbjct: 552 SKGIGRIGIFSSPAGGRRQKSGRKSRGTEGKNGRSRRHSVS 592

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224140629|ref|XP_002323684.1| predicted protein [Populus trichocarpa] gi|222868314|gb|EEF05445.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359480980|ref|XP_002269960.2| PREDICTED: BTB/POZ domain-containing protein At3g08570-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356568248|ref|XP_003552325.1| PREDICTED: BTB/POZ domain-containing protein At3g08570-like [Glycine max] Back     alignment and taxonomy information
>gi|356532135|ref|XP_003534629.1| PREDICTED: BTB/POZ domain-containing protein At3g08570-like [Glycine max] Back     alignment and taxonomy information
>gi|357506707|ref|XP_003623642.1| BTB/POZ domain-containing protein [Medicago truncatula] gi|355498657|gb|AES79860.1| BTB/POZ domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|296085843|emb|CBI31167.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|125533186|gb|EAY79734.1| hypothetical protein OsI_34891 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|77548379|gb|ABA91176.1| transposon protein, putative, Mutator sub-class, expressed [Oryza sativa Japonica Group] gi|125576003|gb|EAZ17225.1| hypothetical protein OsJ_32741 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|240255303|ref|NP_187469.4| phototropic-responsive NPH3-like protein [Arabidopsis thaliana] gi|338819812|sp|Q9C9Z7.2|Y3857_ARATH RecName: Full=BTB/POZ domain-containing protein At3g08570 gi|332641126|gb|AEE74647.1| phototropic-responsive NPH3-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query568
TAIR|locus:2077763617 AT3G08570 [Arabidopsis thalian 0.991 0.912 0.624 1.7e-176
TAIR|locus:2077868582 AT3G08660 [Arabidopsis thalian 0.936 0.914 0.615 8e-172
TAIR|locus:2156524614 AT5G48800 [Arabidopsis thalian 0.945 0.874 0.488 3.7e-135
TAIR|locus:2007564634 AT1G03010 [Arabidopsis thalian 0.507 0.454 0.455 1.6e-128
TAIR|locus:504954965604 AT5G67385 [Arabidopsis thalian 0.973 0.915 0.428 2.3e-110
TAIR|locus:2154920668 AT5G66560 [Arabidopsis thalian 0.512 0.435 0.406 2.9e-91
TAIR|locus:2064357593 RPT2 "ROOT PHOTOTROPISM 2" [Ar 0.954 0.913 0.354 1.1e-89
TAIR|locus:2173204591 AT5G13600 [Arabidopsis thalian 0.600 0.576 0.349 1.5e-89
TAIR|locus:2028160665 AT1G30440 [Arabidopsis thalian 0.448 0.383 0.418 1.7e-84
TAIR|locus:2173418 746 NPH3 "NON-PHOTOTROPIC HYPOCOTY 0.264 0.201 0.466 3e-84
TAIR|locus:2077763 AT3G08570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1714 (608.4 bits), Expect = 1.7e-176, P = 1.7e-176
 Identities = 369/591 (62%), Positives = 446/591 (75%)

Query:     1 IFSDVAGDITIVVDGESFLLHKFPLVSRSGKIRKMVADAKDSNS--SKLELHNIPGGPQT 58
             IFSDVAGDITIVVDGESFLLHKFPLV+R GKIRKMVA+ K+S+S  S  EL + PGG +T
Sbjct:    30 IFSDVAGDITIVVDGESFLLHKFPLVARCGKIRKMVAEMKESSSNLSHTELRDFPGGSKT 89

Query:    59 FELAVKFCYGMNFEITTTNVASLRCAAEYLEMTEDYRDENLVARTEVYLNEVVVQSLEKS 118
             FELA+KFCYG+NFEIT +NV ++RCAA YLEMTED+++ENL+ARTE YL +V  +SLEKS
Sbjct:    90 FELAMKFCYGINFEITISNVVAIRCAAGYLEMTEDFKEENLIARTETYLEQVAFRSLEKS 149

Query:   119 VEVLSICEMLPP--VAEEVGIVNRCVEAVAVNACKEQLVSGLSRLDCNGESAELKSG-CL 175
             VEVL  CE L P  +AE   I +RCVEA+AVNAC+EQLV GLSRL+   ES ELK G   
Sbjct:   150 VEVLCSCETLYPQDIAETAHIPDRCVEAIAVNACREQLVLGLSRLNRGTESGELKRGDSP 209

Query:   176 EWWIEDLSALGIDYYQRVVCAMGRAGIRPDSITASLMHYAQASLKGIGKFQIWNPARMKS 235
             EWWIEDLSAL IDYY RVV AM R G+R +SI  SLMHYAQ SLKGI   +     R K 
Sbjct:   210 EWWIEDLSALRIDYYARVVSAMARTGLRSESIITSLMHYAQESLKGIRNCK----ERTKL 265

Query:   236 NRTMAENDQRTILETLVSLLPNEKSS-SIPQNFL-FGM-LRMGIM----VDASIACKLEL 288
             +    EN+QR +LE +VSL PN+    S     L  G+ + + I     ++  IA +LE 
Sbjct:   266 DSGTFENEQRNVLEAIVSLFPNDNVPLSFLFGMLRVGITINVAISCRLELERRIAQQLET 325

Query:   289 ERR--IAFRLEMTGDSLFDVDTVHRILINFLQRIEDED--NDDCGYESEG---LGSPGHG 341
                  +   +   GDS++DVDTVHRIL+ FL++IE+E+  ++DC YE+E     GS  H 
Sbjct:   326 VSLDDLLIPVVRDGDSMYDVDTVHRILVCFLKKIEEEEEYDEDCCYENETENLTGSMCHS 385

Query:   342 SLLKVGRLIDAYLAEIAPDPYLSLQKFIAMLEILPDYSRVIDDGLYRAIDIYLKAHPMLT 401
             SLLKVGR++DAYLAEIAPDP LSL KF+A++EILPDY+RV+DDGLYRAID++LK HP L 
Sbjct:   386 SLLKVGRIMDAYLAEIAPDPCLSLHKFMALIEILPDYARVMDDGLYRAIDMFLKGHPSLN 445

Query:   402 EHECKKLCKFIDCQKLSQEASNHAAQNDRLPVQMAVRVLYFEQLRLQNALSGSSGDGFL- 460
             E ECK LCKFID QKLSQEA NH AQNDRLP+QM VRVLY EQLR++N +SG SG+G L 
Sbjct:   446 EQECKSLCKFIDTQKLSQEACNHVAQNDRLPMQMVVRVLYSEQLRMKNVMSGESGEGLLL 505

Query:   461 -SQRMSSGVPSAAMSPRDNYASLRRENRELKLEISRMRVRLSELEKEQMFMKQGMIDKSG 519
              SQ+ SS  PS A+SPRD YASLRRENRELKLEISR+RVRL+ELEKEQ+ MKQGM++KSG
Sbjct:   506 SSQKHSSENPSRAVSPRDTYASLRRENRELKLEISRVRVRLTELEKEQILMKQGMMEKSG 565

Query:   520 NGKTFLTSISKGIGRIGIFNG-PTGGKRQKSSRKSRG--DGKTGRSRRYSV 567
             +G T LTS+SKGIGRI IF G PT GK + ++RKS+   + KT RSR  S+
Sbjct:   566 HGGTLLTSLSKGIGRISIFGGGPTEGKLRNANRKSKSRLERKTVRSRPESM 616
GO:0004871 "signal transducer activity" evidence=IEA;ISS
GO:0009416 "response to light stimulus" evidence=IEA;ISS
TAIR|locus:2077868 AT3G08660 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156524 AT5G48800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2007564 AT1G03010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504954965 AT5G67385 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154920 AT5G66560 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2064357 RPT2 "ROOT PHOTOTROPISM 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173204 AT5G13600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028160 AT1G30440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173418 NPH3 "NON-PHOTOTROPIC HYPOCOTYL 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9C9Z7Y3857_ARATHNo assigned EC number0.64740.97880.9011yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query568
pfam03000249 pfam03000, NPH3, NPH3 family 1e-107
smart0022597 smart00225, BTB, Broad-Complex, Tramtrack and Bric 9e-07
pfam00651101 pfam00651, BTB, BTB/POZ domain 8e-06
>gnl|CDD|217312 pfam03000, NPH3, NPH3 family Back     alignment and domain information 
 Score =  322 bits (828), Expect = e-107
 Identities = 124/260 (47%), Positives = 163/260 (62%), Gaps = 25/260 (9%)

Query: 176 EWWIEDLSALGIDYYQRVVCAMGRAGIRPDSITASLMHYAQASLKGIGKFQIWNPARMKS 235
           +WW EDLS L ID ++RV+ AM   G++P+ I  +LMHYA+  L G+         R  S
Sbjct: 2   DWWFEDLSELSIDLFKRVITAMKSRGVKPEVIGEALMHYAKKWLPGLS--------RSGS 53

Query: 236 NRTMAENDQRTILETLVSLLPNEKSSSIPQNFLFGMLRMGIMVDASIACKLELERRIAFR 295
           +   +E +QR +LET+VSLLP+EK S +  +FLF +LR  I++ AS +C+ ELERRI  +
Sbjct: 54  SEEDSEEEQRALLETIVSLLPSEKGS-VSCSFLFKLLRAAIILGASESCREELERRIGLQ 112

Query: 296 LEM-------------TGDSLFDVDTVHRILINFLQRIEDEDNDDCGYESEGLGSPGHGS 342
           L+                ++L+DVD V RIL  FL R           + +   SP   S
Sbjct: 113 LDQATLDDLLIPSGYSGEETLYDVDLVQRILEVFLSRDAA---TQSSDDEDSEASPSSSS 169

Query: 343 LLKVGRLIDAYLAEIAPDPYLSLQKFIAMLEILPDYSRVIDDGLYRAIDIYLKAHPMLTE 402
           LLKV +L+D YLAEIAPDP L L KFIA+ E +PD +R   DGLYRAIDIYLKAHP L+E
Sbjct: 170 LLKVAKLVDGYLAEIAPDPNLKLSKFIALAEAVPDSARPSHDGLYRAIDIYLKAHPNLSE 229

Query: 403 HECKKLCKFIDCQKLSQEAS 422
            E K+LC+ +DCQKLSQEA 
Sbjct: 230 SEKKRLCRLMDCQKLSQEAC 249

Phototropism of Arabidopsis thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase. Mutations in NPH3 disrupt early signaling occurring downstream of the NPH1 photoreceptor. The NPH3 gene encodes a NPH1-interacting protein. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay. Length = 249
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 568
PF03000258 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 pr 100.0
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 99.96
PHA02713557 hypothetical protein; Provisional 99.95
PHA03098534 kelch-like protein; Provisional 99.93
PHA02790480 Kelch-like protein; Provisional 99.92
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 99.69
KOG4350620 consensus Uncharacterized conserved protein, conta 99.66
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 99.62
KOG2075521 consensus Topoisomerase TOP1-interacting protein B 99.58
KOG4591280 consensus Uncharacterized conserved protein, conta 99.4
KOG4682488 consensus Uncharacterized conserved protein, conta 99.16
KOG07831267 consensus Uncharacterized conserved protein, conta 98.9
KOG0783 1267 consensus Uncharacterized conserved protein, conta 98.49
PF11822317 DUF3342: Domain of unknown function (DUF3342); Int 97.47
KOG2716230 consensus Polymerase delta-interacting protein PDI 97.37
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 97.19
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 97.01
PF07707103 BACK: BTB And C-terminal Kelch; InterPro: IPR01170 96.75
KOG2838401 consensus Uncharacterized conserved protein, conta 96.55
smart00875101 BACK BTB And C-terminal Kelch. The BACK domain is 96.03
KOG2838401 consensus Uncharacterized conserved protein, conta 95.72
KOG3473112 consensus RNA polymerase II transcription elongati 95.6
KOG1724162 consensus SCF ubiquitin ligase, Skp1 component [Po 95.39
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 95.38
KOG0511516 consensus Ankyrin repeat protein [General function 95.25
KOG2714465 consensus SETA binding protein SB1 and related pro 92.34
COG5201158 SKP1 SCF ubiquitin ligase, SKP1 component [Posttra 90.7
KOG0511516 consensus Ankyrin repeat protein [General function 88.61
KOG1987297 consensus Speckle-type POZ protein SPOP and relate 87.95
KOG1665302 consensus AFH1-interacting protein FIP2, contains 86.92
PF0146678 Skp1: Skp1 family, dimerisation domain; InterPro: 80.78
KOG2715210 consensus Uncharacterized conserved protein, conta 80.69
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana Back     alignment and domain information 
Probab=100.00  E-value=3.3e-79  Score=614.71  Aligned_cols=244  Identities=52%  Similarity=0.846  Sum_probs=216.9

Q ss_pred             hhhhhhhcccChHHHHHHHHHHhcCCCCchhHHHHHHHHHHhhhcccccccccCccccccCcccchHHHHHHHHHHHhhc
Q 035818          176 EWWIEDLSALGIDYYQRVVCAMGRAGIRPDSITASLMHYAQASLKGIGKFQIWNPARMKSNRTMAENDQRTILETLVSLL  255 (568)
Q Consensus       176 dWw~eDl~~L~~d~~~rvI~am~~~~~~~e~I~~al~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~~r~LLE~Iv~lL  255 (568)
                      |||+||++.|++++|+|||.+|+++|+++++|+++|++||++|+|+..+.. +..............+||.+||+||+||
T Consensus         2 dWW~eDl~~L~id~f~rvi~a~~~~~~~~~~I~~~l~~Ya~k~l~~~~~~~-~~~~~~~~~~~~~~~~~r~llEtiV~lL   80 (258)
T PF03000_consen    2 DWWFEDLSELSIDLFKRVISAMKSKGMKPEVIGEALMHYAKKWLPGLSRSS-SGSSSSAESSTSSENEQRELLETIVSLL   80 (258)
T ss_pred             CccHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCccccc-ccccccccccchhHHHHHHHHHHHHHhC
Confidence            699999999999999999999999999999999999999999999985431 1111122333566789999999999999


Q ss_pred             CCCCCCCCChHHHHHHHHhhhhhcCCHHhHHHHHHHHHhhhcc-------------CCCccccHHHHHHHHHHHHhcccc
Q 035818          256 PNEKSSSIPQNFLFGMLRMGIMVDASIACKLELERRIAFRLEM-------------TGDSLFDVDTVHRILINFLQRIED  322 (568)
Q Consensus       256 P~~r~~~vs~~fL~~LLr~a~~l~as~~Cr~~LE~rIg~qLd~-------------~~~~~ydvd~V~ril~~Fl~~~~~  322 (568)
                      |.++ +++||+|||+|||+|+++++|..||.+||+|||.||||             ..+|+||||+|+|||++||.+++.
T Consensus        81 P~e~-~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~~~~~~~t~yDVd~V~riv~~Fl~~~~~  159 (258)
T PF03000_consen   81 PPEK-GSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPSSPSGEDTLYDVDLVQRIVEHFLSQEEE  159 (258)
T ss_pred             CCCC-CcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccCCCCcccchhhHHHHHHHHHHHHhcccc
Confidence            9999 99999999999999999999999999999999999999             234899999999999999998654


Q ss_pred             cCCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhhhcCCCCCChHHHHHHHHhcCCCCcccchhHHHHHHHHHHhCCCCCH
Q 035818          323 EDNDDCGYESEGLGSPGHGSLLKVGRLIDAYLAEIAPDPYLSLQKFIAMLEILPDYSRVIDDGLYRAIDIYLKAHPMLTE  402 (568)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~VakLvD~yLaEiA~D~~L~~~kF~~Lae~lP~~aR~~~DglYrAIDiyLk~Hp~ls~  402 (568)
                      .+ ....+......+++.+++.+||||||+||+|||+|+||+|+||++|||++|++||++|||||||||||||+||+||+
T Consensus       160 ~~-~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~hD~LYrAID~YLk~Hp~ls~  238 (258)
T PF03000_consen  160 AG-EEEESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSARPSHDGLYRAIDIYLKAHPGLSE  238 (258)
T ss_pred             cc-cccccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhhhccchHHHHHHHHHHHcccCCH
Confidence            32 11122223344567899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhccccccccCCHHHh
Q 035818          403 HECKKLCKFIDCQKLSQEAS  422 (568)
Q Consensus       403 ~Er~~lC~~~dc~KLS~eac  422 (568)
                      +||++||++|||||||+|||
T Consensus       239 ~Er~~lC~~ldc~KLS~EAC  258 (258)
T PF03000_consen  239 EERKRLCRLLDCQKLSPEAC  258 (258)
T ss_pred             HHHHHHHhhCCcccCCcccC
Confidence            99999999999999999999

The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown] Back     alignment and domain information
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO) Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>smart00875 BACK BTB And C-terminal Kelch Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] Back     alignment and domain information
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only] Back     alignment and domain information
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only] Back     alignment and domain information
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query568
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 4e-11
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 8e-11
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 5e-10
3b84_A119 Zinc finger and BTB domain-containing protein 48; 7e-10
2vpk_A116 Myoneurin; transcription regulation, transcription 8e-10
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 9e-10
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 1e-09
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 2e-09
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 4e-09
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 6e-09
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 1e-08
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 8e-08
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 1e-07
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 1e-06
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 2e-06
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 2e-06
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 5e-05
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 7e-05
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 3e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 81.1 bits (199), Expect = 4e-16
 Identities = 78/520 (15%), Positives = 161/520 (30%), Gaps = 159/520 (30%)

Query: 14  DGESFLLHKFPLVSRS---GKIRKMVADAKDSNSSKLELHNIPG-GPQTFELAVKFC--- 66
           D + F   K+  VSR     K+R+ + + + +    + +  + G G     +A+  C   
Sbjct: 122 DNQVFA--KYN-VSRLQPYLKLRQALLELRPA--KNVLIDGVLGSGKTW--VALDVCLSY 174

Query: 67  ---YGMNFEITTTNVASLRCAAEYLEMTED--YR-DENLVARTEVYLN------------ 108
                M+F+I   N+ +       LEM +   Y+ D N  +R++   N            
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 109 ------EVVVQSL--------EKSVEVLSI-CEML-----PPVAEEVGIVNRCVEAVAVN 148
                 +     L         K+    ++ C++L       V + +        ++   
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL--- 291

Query: 149 ACKEQLVSGLSRLDCNGESAELKSGCLEWWIEDLSALGIDYYQRVVCAMGRAGIRPDSIT 208
              +     L+      E   L    L+   +DL         R V         P  + 
Sbjct: 292 ---DHHSMTLTP----DEVKSLLLKYLDCRPQDLP--------REVL-----TTNPRRL- 330

Query: 209 ASLMHYAQASLKGIGKFQIWNPARMKSNRTMAENDQRTILE-TLVSLLPNE--------- 258
                    S+  I +      A   + + +  +   TI+E +L  L P E         
Sbjct: 331 ---------SI--IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379

Query: 259 ---KSSSIPQNFLFGML--RMGIMVDASIACKLE----LERR----------IAFRLEMT 299
               S+ IP   L  ++   +       +  KL     +E++          I   L++ 
Sbjct: 380 VFPPSAHIPTILL-SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438

Query: 300 GDSLFDVDTVHRILINFLQRIEDEDNDDC-------------GYESEGLGSPGHGSLLKV 346
            +   +   +HR +++     +  D+DD              G+  + +  P   +L ++
Sbjct: 439 LE---NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495

Query: 347 ---------GRLIDAYLAEIAPDPYLSL-------QKFIAMLEILPDYSRVIDDGLYRAI 390
                     ++     A  A    L+        + +I   +  P Y R+++      +
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC--DNDPKYERLVNA----IL 549

Query: 391 DIYLKAHPMLTEHECKKLCKFIDCQKLSQEASNHAAQNDR 430
           D   K    L   +   L +      L  E      +  +
Sbjct: 550 DFLPKIEENLICSKYTDLLRIA----LMAEDEAIFEEAHK 585
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124 Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138 Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125 Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119 Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116 Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120 Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127 Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119 Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121 Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135 Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Length = 144 Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Length = 116 Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129 Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256 Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145 Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119 Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172 Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312 Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} Length = 279 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query568
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 99.96
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 99.96
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 99.87
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 99.86
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 99.85
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 99.85
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 99.84
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 99.83
3b84_A119 Zinc finger and BTB domain-containing protein 48; 99.83
2vpk_A116 Myoneurin; transcription regulation, transcription 99.83
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 99.83
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 99.82
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 99.82
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 99.82
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 99.82
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 99.82
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 99.81
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 99.8
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 99.8
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 99.75
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 99.4
4ajy_C97 Transcription elongation factor B polypeptide 1; E 99.18
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 99.1
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 98.89
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 98.43
2fnj_C96 Transcription elongation factor B polypeptide 1; b 98.42
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 98.41
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 97.92
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 97.92
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 97.19
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 96.61
3kvt_A115 Potassium channel protein SHAW; tetramerization do 95.56
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 94.57
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 93.89
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 92.52
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 91.2
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
Probab=99.96  E-value=2.2e-30  Score=259.69  Aligned_cols=222  Identities=14%  Similarity=0.154  Sum_probs=168.3

Q ss_pred             CCCcccEEEEEcCeEEEeehHhhcccCHHHHHhhc-CCc--cCCCCeeeeCCCCCCHHHHHHHHHHHhCCcccCChhhHH
Q 035818            3 SDVAGDITIVVDGESFLLHKFPLVSRSGKIRKMVA-DAK--DSNSSKLELHNIPGGPQTFELAVKFCYGMNFEITTTNVA   79 (568)
Q Consensus         3 s~~~sDV~i~V~g~~F~~HK~vLas~S~yFr~lf~-~~~--es~~~~I~L~dipGG~eaFe~vl~F~Yt~~i~it~~NV~   79 (568)
                      ++.+|||+|.|||+.|++||.+|+++|+||++||+ ++.  ++...+|+|++++  +++|+.+++|+|||++.++.+|+.
T Consensus        28 ~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~--~~~f~~ll~~~Yt~~~~i~~~~v~  105 (256)
T 3hve_A           28 ESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGIS--VMVMREILDYIFSGQIRLNEDTIQ  105 (256)
T ss_dssp             --CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCC--HHHHHHHHHHHHHSCCCCC-CCHH
T ss_pred             cCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCC--HHHHHHHHhhccCCCCcccHhHHH
Confidence            47899999999999999999999999999999998 454  5677899999999  999999999999999999999999


Q ss_pred             HHHHHHHHhccccccchhhHHHHHHHHHHHHhccChhHHHHHHHhcccchHHHHHhc---hHHHHHHHHHHHhhhhhhhc
Q 035818           80 SLRCAAEYLEMTEDYRDENLVARTEVYLNEVVVQSLEKSVEVLSICEMLPPVAEEVG---IVNRCVEAVAVNACKEQLVS  156 (568)
Q Consensus        80 ~Ll~AA~~L~m~e~~~~~NL~~~ce~fL~~~l~~s~~n~i~vL~sc~~l~~~Ae~~~---lv~rci~~la~~a~~~~~~~  156 (568)
                      .++.||++|+|++      |+..|++||.+.+  +++||+.++       .+|+.++   +.+.|.+.|..+...     
T Consensus       106 ~ll~~A~~l~i~~------l~~~c~~~L~~~l--~~~n~~~i~-------~~A~~~~~~~L~~~~~~~i~~~f~~-----  165 (256)
T 3hve_A          106 DVVQAADLLLLTD------LKTLCCEFLEGCI--AAENCIGIR-------DFALHYCLHHVHYLATEYLETHFRD-----  165 (256)
T ss_dssp             HHHHHHHHHTCHH------HHHHHHHHHHHTC--CSSTTHHHH-------HHHHHTTCHHHHHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHChHH------HHHHHHHHHHhhC--CHhhHHHHH-------HHHHHcCcHHHHHHHHHHHHHHHHH-----
Confidence            9999999999999      9999999999999  888998884       5566665   556666666543311     


Q ss_pred             ccccCCCCCCccccccccchhhhhhhcccChHHHHHHHHHHhcCCCCchhHHHHHHHHHHhhhcccccccccCccccccC
Q 035818          157 GLSRLDCNGESAELKSGCLEWWIEDLSALGIDYYQRVVCAMGRAGIRPDSITASLMHYAQASLKGIGKFQIWNPARMKSN  236 (568)
Q Consensus       157 ~~~~~~~~~~s~~~~~~~~dWw~eDl~~L~~d~~~rvI~am~~~~~~~e~I~~al~~Ya~k~l~~~~~~~~~~~~~~~~~  236 (568)
                                      .   +-.++|..|+.+.+..++++......+|+.|+++++.|+++....+              
T Consensus       166 ----------------v---~~~~~f~~L~~~~l~~lL~~d~L~v~~E~~v~~av~~W~~~~~~~R--------------  212 (256)
T 3hve_A          166 ----------------V---SSTEEFLELSPQKLKEVISLEKLNVGNERYVFEAVIRWIAHDTEIR--------------  212 (256)
T ss_dssp             ----------------H---TTCHHHHSSCHHHHHHHHHCC-------CTTHHHHTTTCCC--CCS--------------
T ss_pred             ----------------H---hCCcchhcCCHHHHHHHHccCCCCCCCHHHHHHHHHHHHHcCHHHH--------------
Confidence                            0   2357899999999999999877776679999999999987765432              


Q ss_pred             cccchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHhhhhhcCC-HHhHHHHHH
Q 035818          237 RTMAENDQRTILETLVSLLPNEKSSSIPQNFLFGMLRMGIMVDAS-IACKLELER  290 (568)
Q Consensus       237 ~~~~~~~~r~LLE~Iv~lLP~~r~~~vs~~fL~~LLr~a~~l~as-~~Cr~~LE~  290 (568)
                          ..+...|++.|       |++.+|..||...+....++..+ +.|+..|++
T Consensus       213 ----~~~~~~ll~~V-------Rf~~l~~~~l~~~v~~~~l~~~~~~~c~~ll~~  256 (256)
T 3hve_A          213 ----KVHMKDVMSAL-------WVSGLDSSYLREQMLNEPLVREIVKECSNIPLS  256 (256)
T ss_dssp             ----TTTHHHHHHHH-------HHHTTCC-CHHHHHHTSTTHHHHHCC-------
T ss_pred             ----HHHHHHHHHhC-------CCCCCCHHHHHHHHhcChHHHhhHHHHHHHhhC
Confidence                24567899999       45778888999999999999988 689998875
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 568
d1r29a_122 d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB 3e-10
d1buoa_121 d.42.1.1 (A:) Promyelocytic leukaemia zinc finger 4e-09
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (133), Expect = 3e-10
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 3/86 (3%)

Query: 8   DITIVVDGESFLLHKFPLVSRSGKIRKMVADA-KDSNSSKLELHNIPGGPQTFELAVKFC 66
           D+ IVV  E F  HK  L++ SG    +  D  K + S       I   P+ F + + F 
Sbjct: 27  DVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEIN--PEGFNILLDFM 84

Query: 67  YGMNFEITTTNVASLRCAAEYLEMTE 92
           Y     +   N+ ++   A YL+M  
Sbjct: 85  YTSRLNLREGNIMAVMATAMYLQMEH 110
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query568
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 99.84
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 99.84
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 97.7
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 97.52
d3kvta_103 akv3.1 voltage-gated potassium channel {California 96.41
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 96.08
d1t1da_100 Shaker potassium channel {California sea hare (Apl 96.04
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 92.77
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 92.56
d1fs1b155 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 80.75
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.9e-21  Score=172.51  Aligned_cols=95  Identities=24%  Similarity=0.375  Sum_probs=89.7

Q ss_pred             CCCcccEEEEEcCeEEEeehHhhcccCHHHHHhhcCCccCCCCeeeeCCCCCCHHHHHHHHHHHhCCcccCChhhHHHHH
Q 035818            3 SDVAGDITIVVDGESFLLHKFPLVSRSGKIRKMVADAKDSNSSKLELHNIPGGPQTFELAVKFCYGMNFEITTTNVASLR   82 (568)
Q Consensus         3 s~~~sDV~i~V~g~~F~~HK~vLas~S~yFr~lf~~~~es~~~~I~L~dipGG~eaFe~vl~F~Yt~~i~it~~NV~~Ll   82 (568)
                      .|.+|||+|.|+|++|++||.||+++|+||++||.+    +..+|++++++  |++|+.+++|+|||++.++.+|+.+++
T Consensus        25 ~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~lf~~----~~~~i~~~~v~--~~~f~~ll~~~Ytg~i~l~~~~v~~ll   98 (121)
T d1buoa_          25 AGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHR----NSQHYTLDFLS--PKTFQQILEYAYTATLQAKAEDLDDLL   98 (121)
T ss_dssp             HTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTS----CCSEEEECSSC--HHHHHHHHHHHHHSCCCCCGGGHHHHH
T ss_pred             cCCcEeEEEEECCEEEEEEHHHhcccChhhhhhccC----ccceeecCCCC--HHHHHHHHHheEccccCCcHHHHHHHH
Confidence            378999999999999999999999999999999963    34579999999  999999999999999999999999999


Q ss_pred             HHHHHhccccccchhhHHHHHHHHHHH
Q 035818           83 CAAEYLEMTEDYRDENLVARTEVYLNE  109 (568)
Q Consensus        83 ~AA~~L~m~e~~~~~NL~~~ce~fL~~  109 (568)
                      .||++|+|++      |.+.|++||+.
T Consensus        99 ~~A~~l~~~~------L~~~C~~~L~~  119 (121)
T d1buoa_          99 YAAEILEIEY------LEEQCLKMLET  119 (121)
T ss_dssp             HHHHHHTCHH------HHHHHHHHHHH
T ss_pred             HHHHHhCCHH------HHHHHHHHHHh
Confidence            9999999999      99999999976
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure