Citrus Sinensis ID: 035853
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 581 | 2.2.26 [Sep-21-2011] | |||||||
| Q8W474 | 907 | Probable disease resistan | yes | no | 0.709 | 0.454 | 0.298 | 3e-37 | |
| Q9FJB5 | 901 | Disease resistance RPP8-l | no | no | 0.790 | 0.509 | 0.281 | 1e-36 | |
| P0C8S1 | 906 | Probable disease resistan | no | no | 0.771 | 0.494 | 0.307 | 3e-34 | |
| Q9XIF0 | 906 | Putative disease resistan | no | no | 0.922 | 0.591 | 0.279 | 2e-33 | |
| P0DI18 | 1049 | Probable disease resistan | no | no | 0.729 | 0.404 | 0.281 | 5e-33 | |
| P0DI17 | 1049 | Probable disease resistan | no | no | 0.729 | 0.404 | 0.281 | 5e-33 | |
| Q8W4J9 | 908 | Disease resistance protei | no | no | 0.931 | 0.595 | 0.276 | 6e-33 | |
| Q9FJK8 | 908 | Probable disease resistan | no | no | 0.736 | 0.471 | 0.295 | 4e-32 | |
| P59584 | 910 | Disease resistance protei | no | no | 0.740 | 0.472 | 0.275 | 6e-32 | |
| Q8W3K3 | 910 | Putative disease resistan | no | no | 0.741 | 0.473 | 0.278 | 4e-29 |
| >sp|Q8W474|DRL7_ARATH Probable disease resistance protein At1g58390 OS=Arabidopsis thaliana GN=At1g58390 PE=2 SV=4 | Back alignment and function desciption |
|---|
Score = 156 bits (395), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 145/486 (29%), Positives = 218/486 (44%), Gaps = 74/486 (15%)
Query: 112 LLFSIVELPQHLKLCCLYLSAFRDAFEIATKELYQLWIAEGFIP-------DNSEKTAEE 164
L S ELP +LK C LYL+ F + +I ++L W AEG + + +
Sbjct: 409 LSMSFEELPSYLKHCFLYLAHFPEDHKINVEKLSYCWAAEGISTAEDYHNGETIQDVGQS 468
Query: 165 YLEQLISRGFIKVKKRRAGGTIKTCYISFITRGMLVLVAEFVEFVNVVPSTLRADRSLED 224
YLE+L+ R I ++ TC++ + R + + A+ F+ + ++ S
Sbjct: 469 YLEELVRRNMIIWERDATASRFGTCHLHDMMREVCLFKAKEENFLQIAVKSVGVTSSSTG 528
Query: 225 FKRISVCRTVTNFDSWEHFDTYLHSFLHLTVERKHLSEDVFTLEYCNAICKW-------- 276
+ S CR+ ++ H+ D+ + + + W
Sbjct: 529 NSQ-SPCRS--------------RRLVYQCPTTLHVERDINNPKLRSLVVLWHDLWVENW 573
Query: 277 ---------FKFLRLLDLGTIVLD--EYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLS 325
K LR+LDL + + + P GI L+ L+YL L + HLPSSL NL+
Sbjct: 574 KLLGTSFTRLKLLRVLDLFYVDFEGMKLPFGIGNLIHLRYLSLQDAKVSHLPSSLGNLML 633
Query: 326 L--HTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCS-------SLENLNFI 376
L LD+ +I PD +M+ELR+L LP H K LE L +
Sbjct: 634 LIYLNLDVDTEFI-FVPDVFMRMHELRYLK-----LPLHMHKKTRLSLRNLVKLETLVYF 687
Query: 377 SVLHPSSCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQP 436
S H SS +D+ G + L T + + LS ++ L +LE L +V + ++
Sbjct: 688 STWHSSS--KDLCG-MTRLMTLAIRLTRVTSTETLSASISGLRNLEYLYIVGTHSKKMRE 744
Query: 437 SSIVL--------------PEYQ-FPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKK 481
IVL P Q FP RL + LS L+ DPMP LEKL HL+ + L K
Sbjct: 745 EGIVLDFIHLKHLLLDLYMPRQQHFPSRLTFVKLSECGLEEDPMPILEKLLHLKGVILLK 804
Query: 482 NSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEEL 541
S+ GR++VCS GGFP LK + + + EEW +E +MP LE+L I C LK +P+ L
Sbjct: 805 GSYCGRRMVCSGGGFPQLKKLEIVGLNKWEEWLVEEGSMPLLETLSILDCEELKEIPDGL 864
Query: 542 WRIKSL 547
I SL
Sbjct: 865 RFIYSL 870
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Possible disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJB5|RP8L3_ARATH Disease resistance RPP8-like protein 3 OS=Arabidopsis thaliana GN=RPP8L3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 148/526 (28%), Positives = 247/526 (46%), Gaps = 67/526 (12%)
Query: 93 GRNSLVEN-MRLTWRIQKWPLLFSIVELPQHLKLCCLYLSAFRDAFEIATKELYQLWIAE 151
G++ L +N + +RI L S +LP LK C LYL+ F + ++I T+ LY W AE
Sbjct: 390 GKSCLDDNSLNSVYRI----LSLSYEDLPTDLKHCFLYLAHFPEDYKIKTRTLYSYWAAE 445
Query: 152 GFIPDNSE-KTAEEYLEQLISRGFIKVKKRRAGGTIKTCYISFITRGMLVLVAEFVEFVN 210
G + + E+YLE+L+ R + +K +K C + + R + + A+ F+
Sbjct: 446 GIYDGLTILDSGEDYLEELVRRNLVIAEKSNLSWRLKLCQMHDMMREVCISKAKVENFLQ 505
Query: 211 VVP-----STLRADRSLEDFKRISVCRTVTNFDSWEHFDTYLHSFLHLTVERK----HLS 261
++ ST+ A +S +R++V H H H R L
Sbjct: 506 IIKVPTSTSTIIA-QSPSRSRRLTV-----------HSGKAFHILGHKKKVRSLLVLGLK 553
Query: 262 EDVFTLEYCNAICKWFKFLRLLDLGTIVLD--EYPAGINPLLLLKYLVLNIPSLKHLPSS 319
ED++ + + LR+LDL ++ + + P+ I L+ L++L L+ + HLPS+
Sbjct: 554 EDLWI--QSASRFQSLPLLRVLDLSSVKFEGGKLPSSIGGLIHLRFLSLHQAVVSHLPST 611
Query: 320 LCNL-----LSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCC--SSLEN 372
+ NL L+LH + H P+ + +M ELR+L S+ L H L N
Sbjct: 612 IRNLKLMLYLNLH---VAIGVPVHVPNVLKEMLELRYL---SLPLDMHDKTKLELGDLVN 665
Query: 373 LNFISVLHPSSCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERT- 431
L ++ + L R+ L+ F V + LS++L LE+L + R
Sbjct: 666 LEYLWCFSTQHSSVTDLLRMTKLRFFGVSFSERCTFENLSSSLRQFRKLETLSFIYSRKT 725
Query: 432 -------------IALQPSSI------VLPEYQFPPRLIELSLSNTELKYDPMPALEKLP 472
I L+ S+ + ++Q PP + + L ++ DPMP LEKL
Sbjct: 726 YMVDYVGEFVLDFIHLKKLSLGVHLSKIPDQHQLPPHIAHIYLLFCHMEEDPMPILEKLL 785
Query: 473 HLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCA 532
HL+ ++L++ +F GR++VCS GGFP L+ + + LEEW +E +MP L LII+ C
Sbjct: 786 HLKSVELRRKAFIGRRMVCSKGGFPQLRALQISEQSELEEWIVEEGSMPCLRDLIIHSCE 845
Query: 533 YLKILPEELWRIKSLTKLELWWPRFELRETLRKFEDREQYDIQIYP 578
L+ LP+ L + SL +L++ + E +E K + Y +Q P
Sbjct: 846 KLEELPDGLKYVTSLKELKIEGMKREWKE---KLVGEDYYKVQHIP 888
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Disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C8S1|RP8L2_ARATH Probable disease resistance RPP8-like protein 2 OS=Arabidopsis thaliana GN=RPP8L2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 157/510 (30%), Positives = 243/510 (47%), Gaps = 62/510 (12%)
Query: 112 LLFSIVELPQHLKLCCLYLSAFRDAFEIATKELYQLWIAEGFIP---DNS--EKTAEEYL 166
L S +LP LK C YL+ F + ++I K L+ W+AEG I D S + T E YL
Sbjct: 407 LSLSYEDLPMQLKHCFFYLAHFPEDYKIDVKILFNYWVAEGIITPFHDGSTIQDTGESYL 466
Query: 167 EQLISRGFIKVKKRRAGGTIKTCYISFITRGMLVLVAEFVEFVNVV--PSTLRADRSLED 224
E+L+ R + V++ I+ C + + R + + A+ F+ VV P+T + +
Sbjct: 467 EELVRRNMVVVEESYLTSRIEYCQMHDMMREVCLSKAKEENFIRVVKVPTTTSTTINAQ- 525
Query: 225 FKRISVCRTVTNFDSWEHFDTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFK---FLR 281
S CR+ H LH H +K S +F +E + F+ LR
Sbjct: 526 ----SPCRSRRLV---LHSGNALHMLGHKD-NKKARSVLIFGVEEKFWKPRGFQCLPLLR 577
Query: 282 LLDLGTIVLD--EYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWS--YIH 337
+LDL + + + P+ I L+ L++L L + HLPSSL NL L L++ + +
Sbjct: 578 VLDLSYVQFEGGKLPSSIGDLIHLRFLSLYEAGVSHLPSSLGNLKLLLCLNLGVADRLLV 637
Query: 338 HTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENL----NF------------------ 375
H P+ + +M ELR+L ++PA L NL NF
Sbjct: 638 HVPNVLKEMQELRYLRLPR-SMPAKTKLELGDLVNLESLTNFSTKHGSVTDLLRMTKLSV 696
Query: 376 ISVLHPSSCTQDILGRLPSLQTFRVHENLS--SYQSM-LSNNLCPLLHLESLKLVDERTI 432
++V+ CT + L L SL+ R E LS +Q + ++N+ LL L+ + L D +
Sbjct: 697 LNVIFSGECTFETL--LLSLRELRNLETLSFHDFQKVSVANHGGELLVLDFIHLKD---L 751
Query: 433 ALQPSSIVLP----EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRK 488
L S+ LP +Y+FPP L + L ++ DPMP LEKL HL+ + L +F GR+
Sbjct: 752 TL---SMHLPRFPDQYRFPPHLAHIWLIGCRMEEDPMPILEKLLHLKSVYLSSGAFLGRR 808
Query: 489 LVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLT 548
+VCS GGFP L + + L EW +E +MP L +L I+ C LK LP+ L + L
Sbjct: 809 MVCSKGGFPQLLALKMSYKKELVEWRVEEGSMPCLRTLTIDNCKKLKQLPDGLKYVTCLK 868
Query: 549 KLELWWPRFELRETLRKFEDREQYDIQIYP 578
+L++ + E E L + Y +Q P
Sbjct: 869 ELKIERMKREWTERL-VIGGEDYYKVQHIP 897
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Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9XIF0|DRL13_ARATH Putative disease resistance protein At1g59780 OS=Arabidopsis thaliana GN=At1g59780 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 173/620 (27%), Positives = 271/620 (43%), Gaps = 84/620 (13%)
Query: 5 KTALHDYLRNKRYLIVFEDVISSDVWDYIGKALPDHQNGSRVLAM--------------- 49
+ L L K+ LIVF+D+ + W I P+ + G +VL
Sbjct: 250 QKKLFQLLETKKALIVFDDLWKREDWYRIAPMFPERKAGWKVLLTSRNDAIHPHCVTFKP 309
Query: 50 -LTCSDE--------IFSLCRLENGEMIHLDSVPAGPLRAKYQER-PLVFLYYGRNSLVE 99
L DE FS + G +I + V K+ +R PL G +
Sbjct: 310 ELLTHDECWKLLQRIAFSKQKTITGYIIDKEMVKMAKEMTKHCKRLPLAVKLLGGLLDAK 369
Query: 100 NMRLTWRIQKWPLLFSIV-----------------------ELPQHLKLCCLYLSAFRDA 136
+ W++ ++ IV LP +LK C LYL+++ +
Sbjct: 370 HTLRQWKLISENIISHIVVGGTSSNENDSSSVNHVLSLSFEGLPGYLKHCLLYLASYPED 429
Query: 137 FEIATKELYQLWIAEGFI-PDNSEKT-----AEEYLEQLISRGFIKVKKRRAGGTIKTCY 190
EI + L +W AEG P N E A+ Y+E+L+ R + ++ + C
Sbjct: 430 HEIEIERLSYVWAAEGITYPGNYEGATIRDVADLYIEELVKRNMVISERDALTSRFEKCQ 489
Query: 191 ISFITRGMLVLVAEFVEFVNVV--PSTLRADRSLEDFK--RISVCRTVTNFDSWEHFDTY 246
+ + R + +L A+ F+ +V P++ + SL + R+ V T + ++
Sbjct: 490 LHDLMREICLLKAKEENFLQIVTDPTSSSSVHSLASSRSRRLVVYNTSIFSGENDMKNSK 549
Query: 247 LHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVL--DEYPAGINPLLLLK 304
L S L + V S +E LR+LDL + P+ I L+ LK
Sbjct: 550 LRSLLFIPVGYSRFSMGSNFIE--------LPLLRVLDLDGAKFKGGKLPSSIGKLIHLK 601
Query: 305 YLVLNIPSLKHLPSSLCNLLSLHTLDMRWS--YIHHTPDEIWKMNELRHLNF----GSIT 358
YL L S+ +LPSSL NL SL L++R + + + P+ +M ELR+L+ S+T
Sbjct: 602 YLSLYQASVTYLPSSLRNLKSLLYLNLRINSGQLINVPNVFKEMLELRYLSLPWERSSLT 661
Query: 359 LPAHPGKCCSSLENLNFISVLHPSSCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPL 418
G LE L S S + +L +LQ E L + LS+ L L
Sbjct: 662 -KLELGNLLK-LETLINFSTKDSSVTDLHRMTKLRTLQILISGEGL--HMETLSSALSML 717
Query: 419 LHLESLKLV-DERTIALQPSSIV----LPEYQ-FPPRLIELSLSNTELKYDPMPALEKLP 472
HLE L + E ++ + ++ LP+ Q FP L +SL L+ DPMP LEKL
Sbjct: 718 GHLEDLTVTPSENSVQFKHPKLIYRPMLPDVQHFPSHLTTISLVYCFLEEDPMPTLEKLL 777
Query: 473 HLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCA 532
L+V+ L N++ GR++VC+ GGFP L + + + LEEW +E +MP L +L I C
Sbjct: 778 QLKVVSLWYNAYVGRRMVCTGGGFPPLHRLEIWGLDALEEWIVEEGSMPLLHTLHIVDCK 837
Query: 533 YLKILPEELWRIKSLTKLEL 552
LK +P+ L I SL +L +
Sbjct: 838 KLKEIPDGLRFISSLKELAI 857
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Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|P0DI18|DRL45_ARATH Probable disease resistance protein RDL6 OS=Arabidopsis thaliana GN=RDL6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 142 bits (359), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 131/466 (28%), Positives = 215/466 (46%), Gaps = 42/466 (9%)
Query: 110 WPLLFSIVELPQHLKLCCLYLSAFRDAFEIATKELYQLWIAEG-FIPDNSE-----KTAE 163
+ L S ELP +LK C LYL+ F D +EI K L W AEG F P + + +
Sbjct: 411 YVLSLSFEELPSYLKHCFLYLAHFPDDYEINVKNLSYYWAAEGIFQPRHYDGEIIRDVGD 470
Query: 164 EYLEQLISRGFIKVKKRRAGGTIKTCYISFITRGMLVLVAEFVEFVNVVPSTLRADRSLE 223
Y+E+L+ R + ++ +TC++ + R + +L A+ F+ + S SL
Sbjct: 471 VYIEELVRRNMVISERDVKTSRFETCHLHDMMREVCLLKAKEENFLQITSSRTSTGNSLS 530
Query: 224 --DFKRISVCRTVTNFDSWEHFDTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLR 281
+R+ +T + D L S + V ++ ++ + + LR
Sbjct: 531 IVTSRRLVYQYPITLDVEKDINDPKLRSLV--VVANTYMFWGGWSWMLLGSSFIRLELLR 588
Query: 282 LLDLGTIVL--DEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHT 339
+LD+ L + + I L+ L+YL L + H+P SL NL L L++ T
Sbjct: 589 VLDIHRAKLKGGKLASSIGQLIHLRYLNLKHAEVTHIPYSLGNLKLLIYLNLVILVSGST 648
Query: 340 --PDEIWKMNELRHLNFGSITLPAHPGKCC----SSLENLNFISVLHPSSCTQDILGRLP 393
P+ + +M +LR+L LP G+ S+L L + +C+ + L +
Sbjct: 649 LVPNVLKEMQQLRYL-----ALPKDMGRKTKLELSNLVKLETLKNFSTKNCSLEDLRGMV 703
Query: 394 SLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVD-ERTIALQPSSIVL----------- 441
L+T + + L+ ++ L +LESL + D + + + IV
Sbjct: 704 RLRTLTIELRKETSLETLAASIGGLKYLESLTITDLGSEMRTKEAGIVFDFVYLKTLTLK 763
Query: 442 -------PEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSG 494
E FP L L L + L+ DPMP LEKL L+ L+L++ SF G+++VCSSG
Sbjct: 764 LYMPRLSKEQHFPSHLTTLYLQHCRLEEDPMPILEKLHQLKELELRRKSFSGKEMVCSSG 823
Query: 495 GFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEE 540
GFP L+ + +K + E+W +E +MP L +L I C LK LP+E
Sbjct: 824 GFPQLQKLSIKGLEEWEDWKVEESSMPVLHTLDIRDCRKLKQLPDE 869
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|P0DI17|DRL11_ARATH Probable disease resistance protein RF9 OS=Arabidopsis thaliana GN=RF9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 142 bits (359), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 131/466 (28%), Positives = 215/466 (46%), Gaps = 42/466 (9%)
Query: 110 WPLLFSIVELPQHLKLCCLYLSAFRDAFEIATKELYQLWIAEG-FIPDNSE-----KTAE 163
+ L S ELP +LK C LYL+ F D +EI K L W AEG F P + + +
Sbjct: 411 YVLSLSFEELPSYLKHCFLYLAHFPDDYEINVKNLSYYWAAEGIFQPRHYDGEIIRDVGD 470
Query: 164 EYLEQLISRGFIKVKKRRAGGTIKTCYISFITRGMLVLVAEFVEFVNVVPSTLRADRSLE 223
Y+E+L+ R + ++ +TC++ + R + +L A+ F+ + S SL
Sbjct: 471 VYIEELVRRNMVISERDVKTSRFETCHLHDMMREVCLLKAKEENFLQITSSRTSTGNSLS 530
Query: 224 --DFKRISVCRTVTNFDSWEHFDTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLR 281
+R+ +T + D L S + V ++ ++ + + LR
Sbjct: 531 IVTSRRLVYQYPITLDVEKDINDPKLRSLV--VVANTYMFWGGWSWMLLGSSFIRLELLR 588
Query: 282 LLDLGTIVL--DEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHT 339
+LD+ L + + I L+ L+YL L + H+P SL NL L L++ T
Sbjct: 589 VLDIHRAKLKGGKLASSIGQLIHLRYLNLKHAEVTHIPYSLGNLKLLIYLNLVILVSGST 648
Query: 340 --PDEIWKMNELRHLNFGSITLPAHPGKCC----SSLENLNFISVLHPSSCTQDILGRLP 393
P+ + +M +LR+L LP G+ S+L L + +C+ + L +
Sbjct: 649 LVPNVLKEMQQLRYL-----ALPKDMGRKTKLELSNLVKLETLKNFSTKNCSLEDLRGMV 703
Query: 394 SLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVD-ERTIALQPSSIVL----------- 441
L+T + + L+ ++ L +LESL + D + + + IV
Sbjct: 704 RLRTLTIELRKETSLETLAASIGGLKYLESLTITDLGSEMRTKEAGIVFDFVYLKTLTLK 763
Query: 442 -------PEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSG 494
E FP L L L + L+ DPMP LEKL L+ L+L++ SF G+++VCSSG
Sbjct: 764 LYMPRLSKEQHFPSHLTTLYLQHCRLEEDPMPILEKLHQLKELELRRKSFSGKEMVCSSG 823
Query: 495 GFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEE 540
GFP L+ + +K + E+W +E +MP L +L I C LK LP+E
Sbjct: 824 GFPQLQKLSIKGLEEWEDWKVEESSMPVLHTLDIRDCRKLKQLPDE 869
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8W4J9|RPP8_ARATH Disease resistance protein RPP8 OS=Arabidopsis thaliana GN=RPP8 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 142 bits (359), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 180/650 (27%), Positives = 281/650 (43%), Gaps = 109/650 (16%)
Query: 3 QRKTALHDYLRNKRYLIVFEDVISSDVWDYIGKALP----------DHQNGSRVLAMLTC 52
QRK L L RYL+V +DV + WD I P G + A TC
Sbjct: 256 QRK--LFQLLEAGRYLVVLDDVWKKEDWDVIKAVFPRKRGWKMLLTSRNEGVGIHADPTC 313
Query: 53 ---------SDEIFSLC-------------RLE------NGEMI-HLDSVP------AGP 77
+E + LC RL+ EM+ H +P G
Sbjct: 314 LTFRASILNPEESWKLCERIVFPRRDETEVRLDEEMEAMGKEMVTHCGGLPLAVKALGGL 373
Query: 78 LRAKYQ--ERPLVFLYYGR----NSLVENMRLT--WRIQKWPLLFSIVELPQHLKLCCLY 129
L K+ E VF G S +++ L +RI L S +LP HLK C L
Sbjct: 374 LANKHTVPEWKRVFDNIGSQIVGGSWLDDNSLNSVYRI----LSLSYEDLPTHLKHCFLN 429
Query: 130 LSAFRDAFEIATKELYQLWIAEGFIPDNS-EKTAEEYLEQLISRGFIKVKKRRAGGTIKT 188
L+ F + EI+T L+ W AEG ++ E + E YLE+L+ R + K
Sbjct: 430 LAHFPEDSEISTYSLFYYWAAEGIYDGSTIEDSGEYYLEELVRRNLVIADDNYLSWQSKY 489
Query: 189 CYISFITRGMLVLVAEFVEFVNVV-----PSTLRADRSLEDFKRISVCRTVTNFDSWEHF 243
C + + R + + A+ F+ ++ ST+ A +S +R+S+ H
Sbjct: 490 CQMHDMMREVCLSKAKEENFLQIIIDPTCTSTINA-QSPSRSRRLSI-----------HS 537
Query: 244 DTYLHSFLHLTVER-KHLSEDVFTLEY---CNAICKWFKFLRLLDLGTIVLD--EYPAGI 297
H H + + L F +Y ++ LR+LDL + + + P I
Sbjct: 538 GKAFHILGHKNKTKVRSLIVPRFEEDYWIRSASVFHNLTLLRVLDLSWVKFEGGKLPCSI 597
Query: 298 NPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIH--HTPDEIWKMNELRHLNFG 355
L+ L+YL L + HLPS++ NL L L++R H P+ + +M +LR+L+
Sbjct: 598 GGLIHLRYLSLYEAKVSHLPSTMRNLKLLLYLNLRVDTEEPIHVPNVLKEMIQLRYLSL- 656
Query: 356 SITLPAHPGKCCSSLENLNFISVLHPSSCTQDILGRLPSLQTFRVHENLSSYQSMLSNNL 415
+ + L NL ++ + L R+ L+ V + LS++L
Sbjct: 657 PLKMDDKTKLELGDLVNLEYLYGFSTQHSSVTDLLRMTKLRYLAVSLSERCNFETLSSSL 716
Query: 416 CPLLHLESLK--------LVD--------------ERTIALQPSSIVLPEYQFPPRLIEL 453
L +LE+L +VD + +A++ S I ++QFPP L+ L
Sbjct: 717 RELRNLETLNFLFSLETYMVDYMGEFVLDHFIHLKQLGLAVRMSKIP-DQHQFPPHLVHL 775
Query: 454 SLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEW 513
L ++ DPMP LEKL HL+ ++L + +F G ++VCS GGFP L V+ + LEEW
Sbjct: 776 FLIYCGMEEDPMPILEKLLHLKSVRLARKAFLGSRMVCSKGGFPQLCVIEISKESELEEW 835
Query: 514 TMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPRFELRETL 563
+E +MP L +L I+ C LK LP+ L I SL +L++ + E +E L
Sbjct: 836 IVEEGSMPCLRTLTIDDCKKLKELPDGLKYITSLKELKIEGMKREWKEKL 885
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. The interaction with TIP (TCV-interacting protein) may be essential for the recognition of the avirulence proteins, and the triggering of the defense response. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJK8|RP8L4_ARATH Probable disease resistance RPP8-like protein 4 OS=Arabidopsis thaliana GN=RPP8L4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 139 bits (351), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 147/498 (29%), Positives = 228/498 (45%), Gaps = 70/498 (14%)
Query: 112 LLFSIVELPQHLKLCCLYLSAFRDAFEIATKELYQLWIAEGFIPDNS-EKTAEEYLEQLI 170
L S +LP HLK LYL+ F + +I T++L+ W AEG ++ + + E YLE+L+
Sbjct: 412 LSLSYEDLPTHLKHRFLYLAHFPEDSKIYTQDLFNYWAAEGIYDGSTIQDSGEYYLEELV 471
Query: 171 SRGFIKVKKRRAGGTIKTCYISFITRGMLVLVAEFVEFVNVVP-----STLRADRSLEDF 225
R + R C + + R + + A+ F+ ++ ST+ A +S
Sbjct: 472 RRNLVIADNRYLSLEFNFCQMHDMMREVCLSKAKEENFLQIIKDPTSTSTINA-QSPSRS 530
Query: 226 KRISVCRTVTNFDSWEHFDTYLHSFLH--------LTVERKHLSEDVFTLEYCNAICKWF 277
+R S+ H H H L V R ED + ++
Sbjct: 531 RRFSI-----------HSGKAFHILGHRNNPKVRSLIVSR--FEEDFWI--RSASVFHNL 575
Query: 278 KFLRLLDLGTIVLD--EYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSY 335
LR+LDL + + + P+ I L+ L+YL L + HLPS++ NL L L++R
Sbjct: 576 TLLRVLDLSRVKFEGGKLPSSIGGLIHLRYLSLYGAVVSHLPSTMRNLKLLLFLNLRVDN 635
Query: 336 IH--HTPDEIWKMNELRHLNFGSITLPAHPGKCCS-------SLENLNFISVLHPSSCTQ 386
H P+ + +M ELR+L +LP +LE L + S H S
Sbjct: 636 KEPIHVPNVLKEMLELRYL-----SLPQEMDDKTKLELGDLVNLEYLWYFSTQH--SSVT 688
Query: 387 DILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLK--------LVDE--------- 429
D+L R+ L+ V + LS++L L +LE L +VD
Sbjct: 689 DLL-RMTKLRNLGVSLSERCNFETLSSSLRELRNLEMLNVLFSPEIVMVDHMGEFVLDHF 747
Query: 430 ---RTIALQPSSIVLP-EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFF 485
+ + L +P ++QFPP L + L + +K DPMP LEKL HL+ + L +F
Sbjct: 748 IHLKQLGLAVRMSKIPDQHQFPPHLAHIHLVHCVMKEDPMPILEKLLHLKSVALSYGAFI 807
Query: 486 GRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEELWRIK 545
GR++VCS GGFP L + + LEEW +E +MP L +L I+ C LK LP+ L I
Sbjct: 808 GRRVVCSKGGFPQLCALGISGESELEEWIVEEGSMPCLRTLTIHDCEKLKELPDGLKYIT 867
Query: 546 SLTKLELWWPRFELRETL 563
SL +L++ + E +E L
Sbjct: 868 SLKELKIREMKREWKEKL 885
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|P59584|RP8HA_ARATH Disease resistance protein RPH8A OS=Arabidopsis thaliana GN=RPH8A PE=3 SV=1 | Back alignment and function description |
|---|
Score = 139 bits (350), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 137/498 (27%), Positives = 229/498 (45%), Gaps = 68/498 (13%)
Query: 112 LLFSIVELPQHLKLCCLYLSAFRDAFEIATKELYQLWIAEGFIPDNS-EKTAEEYLEQLI 170
L S +LP HLK C L+L+ + + +I T++L+ W AEG ++ + + E YLE+L+
Sbjct: 412 LSLSYEDLPTHLKHCFLHLAHYPEDSKIYTQDLFNYWAAEGIYDGSTIQDSGEYYLEELV 471
Query: 171 SRGFIKVKKRR--AGGTIKTCYISFITRGMLVLVAEFVEFVNVVP-----STLRADRSLE 223
R + R + IK C + + R + + A+ F+ ++ ST+ A +S
Sbjct: 472 RRNLVIADNRYLISEFKIKNCQMHDMMREVCLSKAKEENFLQIIKDPTCTSTINA-QSPS 530
Query: 224 DFKRISVCRTVTNFDSWEHFDTYLHSFLH--------LTVERKHLSEDVFTLEYCNAICK 275
+R+S+ H H H L V R ED + ++
Sbjct: 531 RSRRLSI-----------HSGKAFHILGHKRNAKVRSLIVSR--FEEDFWI--RSASVFH 575
Query: 276 WFKFLRLLDLGTIVLD--EYPAGINPLLLLKYLVLNIPSLKHLPSSL-------CNLLSL 326
LR+LDL + + + P I L+ L+YL L + HLPS++ LS+
Sbjct: 576 NLTLLRVLDLSWVKFEGGKLPCSIGGLIHLRYLRLYGAVVSHLPSTMRNLKLLLYLNLSV 635
Query: 327 HTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPSSCTQ 386
H D+ H P+ + +M ELR+L+ + + L NL ++ +
Sbjct: 636 HNEDLI-----HVPNVLKEMIELRYLSI-PVKMDDKTKLELGDLVNLEYLYGFSTQHTSV 689
Query: 387 DILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERT--------------- 431
L R+ L+ V + LS++L L +LE+L ++ R
Sbjct: 690 TDLLRMTKLRNLTVSLSERYNFKTLSSSLRELRNLETLYVLFSRKTYMVDHMGEFVLDHF 749
Query: 432 IALQPSSIVL------PEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFF 485
I L+ +V+ ++QFPP L+ + L ++ DPMP LEKL HL+ ++L+ +F
Sbjct: 750 IHLKELGLVVRMSKIPDQHQFPPHLVHIFLFYCGMEEDPMPILEKLHHLKSVQLRYKAFV 809
Query: 486 GRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEELWRIK 545
GR++VCS GF L + + LE+W +E +MP L +L I+ C LK LP+ L I
Sbjct: 810 GRRMVCSKDGFTQLCALDISKQSELEDWIVEEGSMPCLRTLTIHDCEKLKELPDGLKYIT 869
Query: 546 SLTKLELWWPRFELRETL 563
SL +L++ + E +E L
Sbjct: 870 SLKELKIEGMKREWKEKL 887
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. In contrast to RPP8, it does not specifically recognize the Emco5 avirulence protein from Hyaloperonospora parasitica. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8W3K3|DRL8_ARATH Putative disease resistance protein At1g58400 OS=Arabidopsis thaliana GN=At1g58400 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 130 bits (326), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 133/477 (27%), Positives = 215/477 (45%), Gaps = 46/477 (9%)
Query: 112 LLFSIVELPQHLKLCCLYLSAFRDAFEIATKELYQLWIAEGFIP------DNSEKTAEEY 165
L S ELP +LK C LYL+ F + I ++L W AEG + E Y
Sbjct: 413 LSLSFEELPSYLKHCFLYLAHFPEDHNIKVEKLSYCWAAEGILEPRHYHGQTIRDVGESY 472
Query: 166 LEQLISRGFIKVKKRRAGGTIKTCYISFITRGMLVLVAE---FVEFVNVVPSTLRADRSL 222
+E+L+ R + ++ + C++ + R + +L A+ FV+ +++P T A+
Sbjct: 473 IEELVRRNMVIAERDVTTLRFEACHLHDMMREVCLLKAKEENFVQIASILPPT--ANSQY 530
Query: 223 EDFKRISVCRTVTNFDSWEHFDTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRL 282
R V + T + L + E + S + + + LR+
Sbjct: 531 PGTSRRFVSQNPTTLHVSRDINNPKLQSLLIVWENRRKSWKLLGSSFIR-----LELLRV 585
Query: 283 LDLGTIVLD--EYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMR-WSYIHHT 339
LDL + P+GI L+ L+YL L++ + LPSSL NL L LD+ +
Sbjct: 586 LDLYKAKFEGRNLPSGIGKLIHLRYLNLDLARVSRLPSSLGNLRLLIYLDINVCTKSLFV 645
Query: 340 PDEIWKMNELRHLNFGSITLPAHPGKCCS--SLENLNFISVLHPSSCTQDILGRLPSLQT 397
P+ + M+ELR+L T C+ +LE L S +S +D+ G + SL+T
Sbjct: 646 PNCLMGMHELRYLRLPFNTSKEIKLGLCNLVNLETLENFST--ENSSLEDLRG-MVSLRT 702
Query: 398 FRVHENLSSYQSMLSNNLCPLLHLESL-----------KLVDERTIALQPSSIV------ 440
+ + L ++ + HLE+L K + E I L +
Sbjct: 703 LTIGLFKHISKETLFASILGMRHLENLSIRTPDGSSKFKRIMEDGIVLDAIHLKQLNLRL 762
Query: 441 ----LPEYQ-FPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGG 495
LP+ Q FP L +SL L DP+P LEKL L+ ++L +F G+++V S GG
Sbjct: 763 YMPKLPDEQHFPSHLTSISLDGCCLVEDPLPILEKLLELKEVRLDFRAFCGKRMVSSDGG 822
Query: 496 FPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLEL 552
FP L +++ + EEW +E +MP+L +L I C LK LP+ L I S+ L++
Sbjct: 823 FPQLHRLYIWGLAEWEEWIVEEGSMPRLHTLTIWNCQKLKQLPDGLRFIYSIKDLDM 879
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 581 | ||||||
| 147766035 | 902 | hypothetical protein VITISV_038742 [Viti | 0.917 | 0.590 | 0.308 | 2e-57 | |
| 359496848 | 856 | PREDICTED: disease resistance RPP8-like | 0.745 | 0.505 | 0.334 | 1e-53 | |
| 359491404 | 922 | PREDICTED: probable disease resistance R | 0.936 | 0.590 | 0.291 | 7e-51 | |
| 359489148 | 897 | PREDICTED: probable disease resistance R | 0.929 | 0.602 | 0.289 | 1e-48 | |
| 359489156 | 899 | PREDICTED: probable disease resistance p | 0.946 | 0.611 | 0.282 | 3e-48 | |
| 359489792 | 916 | PREDICTED: probable disease resistance p | 0.932 | 0.591 | 0.292 | 6e-47 | |
| 356496703 | 910 | PREDICTED: disease resistance RPP8-like | 0.944 | 0.603 | 0.294 | 4e-46 | |
| 359489790 | 944 | PREDICTED: probable disease resistance p | 0.924 | 0.568 | 0.289 | 8e-46 | |
| 225454212 | 936 | PREDICTED: putative disease resistance p | 0.936 | 0.581 | 0.286 | 9e-46 | |
| 297745279 | 920 | unnamed protein product [Vitis vinifera] | 0.898 | 0.567 | 0.292 | 2e-45 |
| >gi|147766035|emb|CAN70214.1| hypothetical protein VITISV_038742 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 187/606 (30%), Positives = 293/606 (48%), Gaps = 73/606 (12%)
Query: 12 LRNKRYLIVFEDVISSDVWDYIGKALPDHQNGSRVLAMLTCSD------------EIFSL 59
LR KRYLIV +D+ ++VWD + PD N SRVL D E+ L
Sbjct: 273 LRKKRYLIVLDDIWETEVWDDLKTLFPDVMNASRVLFTTRIRDVAIHADPRSATHELHFL 332
Query: 60 CRLENGEM-------IHLDSVPAGP--------LRAKYQERPLVFLYYG----RNSLVEN 100
+ ++ E+ + DSV P + AK PL + G R +
Sbjct: 333 NQAQSWELFLKKAFPMEGDSVTCPPELERLGTQIVAKCGGLPLAIVIIGGLLSRKEKXPS 392
Query: 101 M------RLTWRIQKWP------LLFSIVELPQHLKLCCLYLSAFRDAFEIATKELYQLW 148
+ ++W++ L S +LP +LK C LY F + EI +L LW
Sbjct: 393 VWLRVLQSISWQLNNDSRQLMEILALSYNDLPYYLKPCFLYFGLFPEDLEIPVGKLVLLW 452
Query: 149 IAEGFIPDNSEKT----AEEYLEQLISRGFIKVKKRRAGGTIKTCYISFITRGMLVLVAE 204
IAEGF+ E++ AE++LE+L+ R I+V ++R G IK C I + R + + A+
Sbjct: 453 IAEGFVQQRGEESMEDVAEDFLEELVDRSMIQVAEKRYNGKIKMCRIHDLLRDLAMSEAK 512
Query: 205 FVEFVNVVPSTLRADRSLEDFKRISVCRTVTNFDSWEHFDTYLHSFLHLTVERKHLSEDV 264
+F+ ++ ST +RISV ++ + H + + S LH + E+
Sbjct: 513 ECKFLEILDSTNIDTSVTTRARRISVHSSLEEYMKLRHPNPHFRSMLHFS-----RCEES 567
Query: 265 FTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLL 324
E ++ + K LR+LDL + P I L+ L+YL L L+ LPSS+ N
Sbjct: 568 LRREQWKSLFESLKLLRVLDLERVQTHALPKEIRELVHLRYLGLRRTGLQRLPSSVQNFC 627
Query: 325 SLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCS--SLENLNFISVLHPS 382
+L TLD+R + + P ++W M LRHL ++ HP S L+ L+ +S+ + +
Sbjct: 628 NLQTLDIRATKVSRLPIQLWNMPGLRHLYLEKTSIAGHPPVHVSVMHLQTLSTVSI-YGN 686
Query: 383 SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKL-----VDERTIAL--- 434
D+LG+L +L+ +H +S LS L L +L++L+L + E TI L
Sbjct: 687 QWIPDLLGKLTNLRKLGIHGYFASQTEALSRCLVKLSNLQNLQLRGTELILEPTIKLLLN 746
Query: 435 QP-------SSIV--LPEYQ-FPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSF 484
QP S + LP+ Q P L ++ L + L D L KLP+L++LKL NSF
Sbjct: 747 QPNIHKLHLSGPIEKLPDPQEIQPNLTKIILEKSLLVQDIFVILGKLPNLQMLKLLINSF 806
Query: 485 FGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEELWRI 544
FG+++ CS+ GFP L + L + LEEW +++ AMP L L+I+ C LK +PE +
Sbjct: 807 FGKEITCSASGFPKLHGLELSELVNLEEWRVDDGAMPSLRHLVIDHCDQLKKIPEGFQYL 866
Query: 545 KSLTKL 550
+L +L
Sbjct: 867 TALREL 872
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359496848|ref|XP_002269653.2| PREDICTED: disease resistance RPP8-like protein 3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 155/463 (33%), Positives = 242/463 (52%), Gaps = 30/463 (6%)
Query: 112 LLFSIVELPQHLKLCCLYLSAFRDAFEIATKELYQLWIAEGFIPDNSEKT----AEEYLE 167
L S +LP +LK C LY F + EI +L LWIAEGF+ E++ AE++LE
Sbjct: 370 LALSYNDLPYYLKPCFLYFGLFPEDLEIPVGKLVLLWIAEGFVQQRGEESMEDVAEDFLE 429
Query: 168 QLISRGFIKVKKRRAGGTIKTCYISFITRGMLVLVAEFVEFVNVVPSTLRADRSLEDFKR 227
+L+ R I+V ++R G IK C I + R + + A+ +F+ ++ ST +R
Sbjct: 430 ELVDRSMIQVAEKRYNGKIKACRIHDLLRDLAMSEAKECKFLEILDSTNIDTSVTTRARR 489
Query: 228 ISVCRTVTNFDSWEHFDTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGT 287
ISV ++ + H + + S LH + + L D + ++ + K LR+LDL
Sbjct: 490 ISVHSSLEEYMKLRHPNPHFRSMLHFSRCEESLRRDQW-----KSLFESLKLLRVLDLER 544
Query: 288 IVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMN 347
+ P I L+ L+YL L L+ LPSS+ N +L TLD+R + + P ++W M
Sbjct: 545 VQTHALPKEIRELVHLRYLGLRRTGLQRLPSSIQNFCNLQTLDIRATKVSRLPIQLWNMP 604
Query: 348 ELRHLNFGSITLPAHPGKCCS--SLENLNFISVLHPSSCTQDILGRLPSLQTFRVHENLS 405
LRHL ++ HP S L+ L+ +S+ + + D+LG+L +L+ +H +
Sbjct: 605 GLRHLYLEKTSIAGHPPVHVSVMHLQTLSTVSI-YGNQWIPDLLGKLTNLRKLGIHGYFA 663
Query: 406 SYQSMLSNNLCPLLHLESLKL-----VDERTIAL---QP-------SSIV--LPEYQ-FP 447
S LS L L +L++L+L + E TI L QP S + LP+ Q
Sbjct: 664 SQTEALSRCLVKLSNLQNLQLRGTELILEPTIKLLLNQPNIHKLHLSGPIEKLPDPQEIQ 723
Query: 448 PRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSM 507
P L ++ L N+ L D L KLP+L++LKL NSFFG+++ CS+ GFP L + L +
Sbjct: 724 PNLTKIILENSLLVQDIFVILGKLPNLQMLKLLINSFFGKEITCSASGFPKLHGLELSEL 783
Query: 508 FWLEEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKL 550
LEEW +++ AMP L LII+ C LK +PE + +L +L
Sbjct: 784 VNLEEWRVDDGAMPSLRHLIIDHCDQLKKIPEGFQYLTALREL 826
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359491404|ref|XP_002274414.2| PREDICTED: probable disease resistance RPP8-like protein 2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 208 bits (529), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 189/649 (29%), Positives = 297/649 (45%), Gaps = 105/649 (16%)
Query: 2 EQRKTALHDYLRNKRYLIVFEDVISSDVWDYIGKALPDHQNGSRVLAMLTCSDEIFSL-- 59
E + AL +L K+Y IV +D+ +VWD + A PD +NGSR++ D
Sbjct: 271 EDLEEALSKFLEEKKYFIVLDDIWKKEVWDDLKAAFPDRKNGSRIIFTTRFKDVALHADP 330
Query: 60 -------CRLENGEMIHL------------DSVP--AGPLRAKYQER----PLVFLYYG- 93
C L + + L S+P + L + +R PL + G
Sbjct: 331 RSPLHEPCLLSDEDGWELLSRKVCLEWNAKTSLPPWSKELGIQIVKRCGGLPLAIVVMGG 390
Query: 94 ---RNSLVEN------MRLTWRIQKWP------LLFSIVELPQHLKLCCLYLSAFRDAFE 138
R N + W++ + P L S +LP +LK C LY F + +E
Sbjct: 391 LLSRKDATFNEWLKVLQSVHWQLAQDPTQCAEILALSYSDLPYYLKSCFLYFGLFPEDYE 450
Query: 139 IATKELYQLWIAEGFIPDNS----EKTAEEYLEQLISRGFIKVKKRRAGGTIKTCYISFI 194
I+ + L LW+AEGF+ E AE+YLE+L+ R I+V R++ G IKTC + +
Sbjct: 451 ISARRLILLWVAEGFVQPRGQEPLEDVAEDYLEELVGRSMIQVATRKSNGRIKTCCVHDL 510
Query: 195 TRGMLVLVAEFVEFVNVVPSTLRADRSLEDFKRISV-------CRTVTNFDSWEHFDTYL 247
+ V + +F++++ SL +R+++ + + S FD
Sbjct: 511 LHELSVSKGKEDQFLDIIHGEFTVS-SLTRVRRLAIHLGVPPTTKNTSKVRSLLCFDICE 569
Query: 248 HSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLV 307
SF L + FK LR+LDL + + + I L+ L+YL
Sbjct: 570 PSFQEL---------------------RKFKLLRILDLEGVYISRLHSSIGNLIHLRYLG 608
Query: 308 LNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCC 367
L LK LP S+ LL+L TLD+R + ++ P IWKM +LRHL F + A
Sbjct: 609 LRGTWLKKLPPSIQFLLNLQTLDLRSTLLNPIPIVIWKMQKLRHLYFNELEEMAVNPPTD 668
Query: 368 SSLENLNFIS--VLHPSSCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLK 425
+SL NL + ++ +S ++ L +L +L+ +H +L ++ + + LE LK
Sbjct: 669 ASLANLQTLHGICINQTSYVENGLSKLTNLRELGLHGDLLLHEEAIGKWIFSSERLECLK 728
Query: 426 L-------------VDERTIALQPSSIVL-----------PEYQFPPRLIELSLSNTELK 461
L + + + P I L EY FP L ELSL + L
Sbjct: 729 LHTRDVMGDFAKNAIPKLNFSSHPHLIKLHLKGFMAKLFDAEY-FPQNLTELSLKGSFLM 787
Query: 462 YDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMP 521
DPM LE L LRVLKLK +++ G++++CS GGFP L + L + +E W +E+ AM
Sbjct: 788 EDPMVKLEMLQSLRVLKLKHSAYLGKEMICSCGGFPQLHFLKLSFLNTVERWRIEDGAMG 847
Query: 522 KLESLIINPCAYLKILPEELWRIKSLTKLELWW-PR-FELRETLRKFED 568
+L L I C LKI+P L + ++ KL+L + PR FE++ R+ E+
Sbjct: 848 RLRQLEIIECKRLKIVPRGLQPVTTIHKLKLGYMPREFEMKVQERQGEN 896
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359489148|ref|XP_003633887.1| PREDICTED: probable disease resistance RPP8-like protein 4-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 187/647 (28%), Positives = 289/647 (44%), Gaps = 107/647 (16%)
Query: 8 LHDYLRNKRYLIVFEDVISSDVWDYIGKALPDHQNGSRVL-------------------- 47
L DYL K+YLIV +D+ ++ WD +G PD NGSRVL
Sbjct: 251 LRDYLTTKKYLIVLDDMWRNEAWDRLGLYFPDSVNGSRVLITSRNKEIGFYADPQAIPHE 310
Query: 48 ----------------------AMLTCSDEIFSLCR--LENGEMIHLDSVPAGPLRAKYQ 83
A C E+ L + + N + L V G L ++ +
Sbjct: 311 LSFLTEEESWELFLKKIFLAGSANAVCPRELEELGKKIVANCGGLPLAIVVLGGLLSRKE 370
Query: 84 ERPLVFLYYGRNSLVENMRLTWRIQKWP------LLFSIVELPQHLKLCCLYLSAFRDAF 137
+ PL + ++++ LTW + + P L S ++P +LK C LY F +
Sbjct: 371 KTPLSW-----QKVLDS--LTWHLNQGPDSCLGVLALSYNDMPYYLKSCFLYCGLFPEDS 423
Query: 138 EIATKELYQLWIAEGFIP----DNSEKTAEEYLEQLISRGFIKVKKRRAGGTIKTCYISF 193
EI T +L +LW+AEGFI + +E AE++L++L+ R I+V R G + +C +
Sbjct: 424 EIWTDKLIRLWVAEGFIQRRGVEIAEDVAEDHLQELVHRSMIQVAARSFDGRVMSCRMHD 483
Query: 194 ITRGMLVLVAE---FVEFVNVVPSTLRADRSLEDFKRISVCRTVTNFDSWEHFDTYLHSF 250
+ R + + A+ F E + ST S +R+++ + H L SF
Sbjct: 484 LLRDLAISEAKDTKFFEGYESIDST-----SPVSVRRLTIHQGKKTNSKHLHTSRSLRSF 538
Query: 251 LHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNI 310
+ +V F ++ + K L +LDL + ++ P GI L+ LKYL L
Sbjct: 539 ICFSV--------CFQKNSLRSLHRRVKLLTVLDLEGMTINTIPEGIGELIHLKYLCLRR 590
Query: 311 PSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNF-GSITLPAHPGK---- 365
+K LPSS+ L +L TLD R + I P IWK++ LRHL G ++ + K
Sbjct: 591 TRIKRLPSSIGRLTNLQTLDFRSTLIEIIPSTIWKLHHLRHLYCRGVVSSQSVIDKFRNG 650
Query: 366 --CCSSLENLNFISVLHPSSCTQDILGRLPSLQTFRV--HENLSSYQSMLSNNLCPLLHL 421
L NL + + S C + LG+L L+ + E + S ++ L L
Sbjct: 651 PLSVGHLTNLQSLCLRAGSWCCGEGLGKLIELRELTIVWTEIAQTKNQGFSESVKKLTAL 710
Query: 422 ESLKL--VDERTIA---LQPSSIVLPEYQ----------------FPPRLIELSLSNTEL 460
+SL+L + E + L P S Y +PP LI L L
Sbjct: 711 QSLRLYTLGEEMLTMPHLMPFSDHTYLYHLSLNGRLERFPDEIEFYPPNLISLELRYRNA 770
Query: 461 KYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAM 520
+ +PM LEKLP+LR L+L S +K+VC+SGGF L+ + L + LEE E AM
Sbjct: 771 EQNPMVTLEKLPNLRFLRLSLCSSMLKKMVCTSGGFQQLETLRLWGLKELEELIAEEGAM 830
Query: 521 PKLESLIINPCAYLKILPEELWRIKSLTKLELWWPRFELRETLRKFE 567
P L+ L+I+ C +K L L + K+L L+L+ EL + L + E
Sbjct: 831 PDLKDLVIDACPKMKRLSHGLLQRKNLQHLKLYDLSPELMDELSRIE 877
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359489156|ref|XP_003633889.1| PREDICTED: probable disease resistance protein RDL6/RF9-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 189/669 (28%), Positives = 295/669 (44%), Gaps = 119/669 (17%)
Query: 6 TALHDYLRNKRYLIVFEDVISSDVWDYIGKALPDHQNGSRVL------------------ 47
+L DYL K+YLIV +D+ ++ WD +G PD NGSRVL
Sbjct: 250 NSLRDYLTTKKYLIVMDDMWRNEAWDRLGLYFPDSVNGSRVLITSRNKQIGLYADPQTIP 309
Query: 48 ------------------------AMLTCSDEIFSLCR--LENGEMIHLDSVPAGPLRAK 81
A C E+ L + + N + L V G L ++
Sbjct: 310 HELSFLTEEESWELFLKKIFLAGSANAVCPRELEELGKKIVANCGGLPLAIVVLGGLLSR 369
Query: 82 YQERPLVFLYYGRNSLVENMRLTWRIQKWP------LLFSIVELPQHLKLCCLYLSAFRD 135
++ PL + ++++ LTW + + P L S ++P +LK C LY F +
Sbjct: 370 KEKTPLSW-----QKVLDS--LTWHLNQGPDSCLGVLALSYNDMPYYLKSCFLYCGLFPE 422
Query: 136 AFEIATKELYQLWIAEGFIPDNSEK----TAEEYLEQLISRGFIKVKKRRAGGTIKTCYI 191
EI T +L +LW+AEGFI E+ AE++L++L+ R I+V R G + +C +
Sbjct: 423 DSEIRTDKLIRLWVAEGFIQRRGEEIAEDVAEDHLQELVHRSMIQVAARSFDGRVMSCRM 482
Query: 192 SFITRGMLVLVAE---FVEFVNVVPSTLRADRSLEDFKRISVCRTVTNFDSWEHFDTYLH 248
+ R + + A+ F E + ST S +R+++ + H L
Sbjct: 483 HDLLRDLAISEAKDTKFFEGYESIDST-----SPVSVRRLTIHQGKKTNSKHLHTSRSLR 537
Query: 249 SFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVL 308
SF+ +V F ++ + K L +LDL + ++ P GI L+ LKYL L
Sbjct: 538 SFICFSV--------CFQENILRSLHRRVKLLTVLDLERMPINTIPEGIGELIHLKYLCL 589
Query: 309 NIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHL-NFGSITLPAHPGKC- 366
+K LPSS+ L +L TLD + ++I P IWK++ LRHL G ++ + KC
Sbjct: 590 RRTRIKRLPSSIGRLTNLQTLDFQSTFIEIIPSTIWKLHHLRHLYGRGVVSSQSVIDKCR 649
Query: 367 -----CSSLENLNFISVLHPSSCTQDILGRLPSLQTFRVH--ENLSSYQSMLSNNLCPLL 419
L NL + + S C + LG+L L+ + + + S ++ L
Sbjct: 650 NGPLSVDHLTNLQSLGLRAGSWCCGEGLGKLTELRELIIEWTKMAQTKNHGFSESVKKLT 709
Query: 420 HLESLKLVDERTIALQPSSIVLP-------------------------EYQF-PPRLIEL 453
L+SL+L L LP E +F PP LI L
Sbjct: 710 ALQSLRLY-----TLGAEMFTLPHLMPFSDHTYLYHLSLRGRLERFPDEIEFYPPNLISL 764
Query: 454 SLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEW 513
L ++ DPM LEKLP+LR L L +K+VC+SGGF L+ + L + LEE
Sbjct: 765 ELECWNIEQDPMVTLEKLPNLRFLILSLCYSMVKKMVCTSGGFQQLETLTLWGLKELEEL 824
Query: 514 TMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPRFELRE--TLRKFEDREQ 571
+E AMP + L+I C +K L L + K+L L+L+ EL + +L + EDRE+
Sbjct: 825 IVEEGAMPDPKDLVIETCPKMKRLSHGLLQRKNLQHLKLYDLSPELMDELSLIEGEDREK 884
Query: 572 YDIQIYPYG 580
+ +G
Sbjct: 885 ICLATSIHG 893
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359489792|ref|XP_002274076.2| PREDICTED: probable disease resistance protein RDL6/RF9-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 195 bits (495), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 197/674 (29%), Positives = 308/674 (45%), Gaps = 132/674 (19%)
Query: 8 LHDYLRNKRYLIVFEDVISSDVWDYIGKALPDHQNGSRVLAM------------------ 49
+ +YL+ K+YL+ +DV S +VW + LP+ ++GS+VL
Sbjct: 267 VREYLKEKKYLVAMDDVWSREVWSSLRSYLPEAKDGSKVLITTRNEEIALHANSQALIYR 326
Query: 50 --LTCSDEIFSL-------CRLENGEMIHLDSVPAGPLRAKYQERPLVFLYYGRN-SLVE 99
+ DE + L R +G + V + AK + PL + G S E
Sbjct: 327 LRIMNDDESWQLLLKKTFGSRSTSGILTPELEVLGKNIVAKCKGLPLAIVVVGGLLSTKE 386
Query: 100 NMR---------LTWRIQKWP------LLFSIVELPQHLKLCCLYLSAFRDAFEIATKEL 144
+ + W + + P L S +LP +LK C LY F + EI T +L
Sbjct: 387 KTKSSWEKVLASIDWHLIQGPESCMGILALSYNDLPYYLKSCFLYCGIFPEDSEIKTSKL 446
Query: 145 YQLWIAEGFIPDNS----EKTAEEYLEQLISRGFIKVKKRRAGGTIKTCYISFITRGMLV 200
QLW+ EGFI E AE+YL +LI R I+V R+ G + +C I + R + +
Sbjct: 447 IQLWLVEGFIQRRGKEPLEDIAEDYLYELIHRSMIQVAARKIDGRVTSCRIHDLLRDLAI 506
Query: 201 LVA------EFVEFVNVV-PSTLRADRSLEDFKRISVCRTVTNFDSWEHF-DTYLHSFLH 252
A E E ++V P +R R+S+ + + N + +H ++ L S +
Sbjct: 507 SEARDARLFEVHENIDVAFPIGVR---------RLSIHQHLINNNISQHLHNSRLRSLIF 557
Query: 253 LTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEY--PAGINPLLLLKYLVLNI 310
T + F + ++ + K L +LDLG+ D Y P I L+ LK+L +
Sbjct: 558 FT--------EPFERKSWKSLKEHIKLLTVLDLGSTD-DNYIVPEEIGELVHLKFLHIRG 608
Query: 311 PSLKHLPSSLCNLLSLHTLDMRWS--YIHHTPDEIWKMNELRHLN--FGSITLPAHPGKC 366
LPSS+ L++L + D+ + YI HT IWK+ +LR+LN G I+ KC
Sbjct: 609 FQRVTLPSSIDRLVNLRSFDLGNNDCYIPHT---IWKLQQLRYLNCCLGEISSQFKLSKC 665
Query: 367 CSS------LENLNFISVLHPSSCTQDILGRLPSLQTFRVH------------ENLSSYQ 408
+ L NL + +L S D LG+L L+ + E +++
Sbjct: 666 VNGYLGVEKLTNLQTLDLLPGSWLEGDGLGKLTQLKELDLGGLLNPHLKKGFFECIANLT 725
Query: 409 SMLSNNLCPLLHLES------------LKLVDERTI--ALQPSSIVLPEYQ--------- 445
++ + NL L E K+++E+T+ L P S Y+
Sbjct: 726 ALRTLNLSHLRGFEKKTLLSHIRLKRWKKVIEEKTLIPGLMPFSHHTYLYKVILGGKLEL 785
Query: 446 ------FPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSL 499
+PP L+EL L ELK DPM LEKLP L+VL+L S+ G+KLVCSSGGF L
Sbjct: 786 SEEIGFYPPNLLELCLCFCELKNDPMFILEKLPKLKVLRLSDGSYVGKKLVCSSGGFLQL 845
Query: 500 KVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPRFEL 559
+ + L ++F LEE +E A+P L++L I C +K LP L ++K+L K+E P+F
Sbjct: 846 QSLELYALFPLEELIVEEGALPHLKTLQIEHCYGMKKLPRGLLQLKNLEKVE---PKFMF 902
Query: 560 RETLRKFEDREQYD 573
+ +FE+ + D
Sbjct: 903 DRLIEEFEETKGED 916
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356496703|ref|XP_003517205.1| PREDICTED: disease resistance RPP8-like protein 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 192/651 (29%), Positives = 295/651 (45%), Gaps = 102/651 (15%)
Query: 2 EQRKTALHDYLRNKRYLIVFEDVISSDVWDYIGKALPDHQNGSRVLAML----------T 51
E+ L + L KRYL+V +D+ +VWD + A P + GS++L
Sbjct: 251 EELVNKLRNVLSEKRYLVVLDDIWGMEVWDGLKSAFPRGKMGSKILLTTRNGDVALHADA 310
Query: 52 CS----------DEIFSL-CRLE----NG---EMIHLDSVPAGPLRAKYQERPLVFLYYG 93
CS DE F L C NG E++ L S+ A + K PL + G
Sbjct: 311 CSNPHQLRTLTEDESFRLLCNKAFPGANGIPLELVQLKSL-AKEIVVKCGGLPLAVVVVG 369
Query: 94 R------NSLVENMRLTWRIQKWPLL-----------FSIVELPQHLKLCCLYLSAFRDA 136
S E R+ I W LL S +LP HLK C LYL F +
Sbjct: 370 GLLSRKLKSSGEWKRVLQNIS-WHLLEEQEKIARILALSYNDLPPHLKSCFLYLGLFPEG 428
Query: 137 FEIATKELYQLWIAEGFIPDNSEKTAE----EYLEQLISRGFIKVKKRRAGGTIKTCYIS 192
I TK+L +LW+AEGF+ E+TAE +YL +LI R I+V + G +KT I
Sbjct: 429 VNIQTKKLIRLWVAEGFLLQEGEETAEGVAQKYLNELIGRCMIQVGTVSSLGRVKTIRIH 488
Query: 193 FITRGMLVLVAEFVEFVNVVPSTLRADRSLEDFKRISVCRTVTNFDSWEHFDTYLHSFLH 252
+ R + + + F+ + + + +R S+ +DS +H + S L
Sbjct: 489 HLLRDLSLSKGKEEYFLKIFQGDVAGQST--KARRHSMHSCHDRYDSLKHNAGHSRSLLF 546
Query: 253 LTVERKHLSEDV-----FTLEY-CNAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYL 306
E + + F E N I + FK LR+L+L + + P+ I L+ L+YL
Sbjct: 547 FNREYNDIVRKLWHPLNFQQEKKLNFIYRKFKLLRVLELDGVRVVSLPSLIGDLIQLRYL 606
Query: 307 VLNIPSLKH-LPSSLCNLLSLHTLDMRWS-YIHHTPDEIWKMNELRHLN-FGSITLPAHP 363
L +L+ LP S+ NL +L TLD+R+ ++ P+ IWKM LRHL + P
Sbjct: 607 GLRKTNLEEELPPSIGNLQNLQTLDLRYCCFLMKIPNVIWKMVNLRHLLLYTPFDSPDSS 666
Query: 364 GKCCSSLENLNFISVLHPSSCTQDILGRLPSLQTFR-----------VHENLSSYQSMLS 412
+L NL + + + D G L ++ R V+ LS+ Q + +
Sbjct: 667 HLRMDTLTNLQTLPHIEAGNWIVD--GGLANMINLRQLGICELSGQMVNSVLSTVQGLHN 724
Query: 413 N------------------NLCPLLHLESLKLVDERTIALQPSSIVLPE-YQFPPRLIEL 453
L HL+ L +L LP+ ++FPP L++L
Sbjct: 725 LHSLSLSLQSEEDEFPIFMQLSQCTHLQKL--------SLNGKIKKLPDPHEFPPNLLKL 776
Query: 454 SLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEW 513
+L N+ L+ + + LE+LP+L+VL L K ++ +L + GFP L ++ L + LEEW
Sbjct: 777 TLHNSHLQKESIAKLERLPNLKVLILGKGAYNWPELNFNGEGFPQLHILRLVLLKELEEW 836
Query: 514 TMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPRFELRETLR 564
T+E +AMP+LE+++I+ C LK +PE L I SL KL++ E LR
Sbjct: 837 TVEENAMPRLENMVIDRCEKLKKIPEGLKAITSLKKLKIIGMPVEFEHKLR 887
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359489790|ref|XP_003633978.1| PREDICTED: probable disease resistance protein At1g58602-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 191 bits (486), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 199/687 (28%), Positives = 307/687 (44%), Gaps = 150/687 (21%)
Query: 8 LHDYLRNKRYLIVFEDVISSDVWDYIGKALPDHQNGSRVLAMLTCSDEI----------- 56
L + L +K+YL+ +DV S + W + LP+ +NGS+VL M T + EI
Sbjct: 270 LRECLNDKKYLVAMDDVWSIEAWSSLRSYLPESRNGSKVL-MTTRNKEIAAQANPHEVVG 328
Query: 57 --------FSLCRLENGEMIHL---------DSVPAG----------PLRAKYQERPLVF 89
+ L ++ E L DS P + AK + PL
Sbjct: 329 HTDSQALVYELRIMDGNESWELFLKKTFGARDSTPVSLSKALEELGRKIVAKCKGLPLAI 388
Query: 90 LYYGRNSLVENMRLT------------WRIQKWP------LLFSIVELPQHLKLCCLYLS 131
+ G L+ T W + + P L S +LP +LK C LY
Sbjct: 389 VVLG--GLLSTKEKTEPSWERVLASIDWHLNRGPESCFGILALSYNDLPYYLKSCFLYCG 446
Query: 132 AFRDAFEIATKELYQLWIAEGFI----PDNSEKTAEEYLEQLISRGFIKVKKRRAGGTIK 187
F + EI +L LWIAEGF+ + E AE++L +LI R ++V +++A G +
Sbjct: 447 IFPEDSEIKASKLIHLWIAEGFVQRRGKEKLEDIAEDFLYELIHRSMVQVARKKANGRVM 506
Query: 188 TCYISFITRGMLVLVAEFVEFVNV-------VPSTLRADRSLEDFKRISVCRTVTNFDSW 240
+C I + R + + A + V P+++R R+S+ + + +
Sbjct: 507 SCRIHDLLRDLAISEARDAKLFEVHENIDFTFPNSVR---------RLSIHQHLVKNNIS 557
Query: 241 EHF-DTYLHSFLHLT--VERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEY--PA 295
+H ++ L S + T +ERK +I + K L +LDLG+I + Y P
Sbjct: 558 QHLHNSLLRSLIFFTDPIERKD----------WRSIQEHVKLLSVLDLGSIE-ENYILPK 606
Query: 296 GINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRW--SYIHHTPDEIWKMNELRHLN 353
I L+ LK+L + LPSS+ L++L L++ + SYI P IWK+ ELRHLN
Sbjct: 607 EIGELIHLKFLCIEGFDRVTLPSSIKRLVNLQNLNLGYNDSYI---PCTIWKLQELRHLN 663
Query: 354 --FGSITLPAHPGKCCSS------LENLNFISVLHPSSCTQDILGRLPSLQTFRVHENLS 405
+G I+ +C S L NL +++ S LG+L L+ + L+
Sbjct: 664 CRYGEISSQFKLNECMSGYLGVEQLTNLQTLALRAGSWLEGGGLGKLTQLRQLDLRGWLT 723
Query: 406 SY-QSMLSNNLCPLLHLESL-----------------------KLVDERT---------- 431
Y + +++ L L +L +V+E+T
Sbjct: 724 PYLKKGFYDSIAELTTLRTLVLRDMEFYKTKTLLNRVGLKWQENIVEEKTLIPGLMSFSR 783
Query: 432 ------IALQPSSIVLPEYQ--FPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNS 483
+ LQ LPE +PP L++L+LS+ ELK DPM LEKLP LR+L+L NS
Sbjct: 784 HTYLYKVFLQGKVDRLPEQTEFYPPNLVKLTLSSCELKDDPMLILEKLPTLRILELVGNS 843
Query: 484 FFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEELWR 543
+ G+ +VCS GGF L+ + L S+ LEE T+E AM L +L I C +K LP L +
Sbjct: 844 YVGKNMVCSFGGFLQLESLELDSLNELEELTVEEGAMCNLRTLQILYCHKMKKLPRGLLQ 903
Query: 544 IKSLTKLELWWPRFELRETLRKFEDRE 570
+K L KL L EL E +++ E E
Sbjct: 904 MKKLEKLGLRTRGEELIEEVQQTEGEE 930
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225454212|ref|XP_002274233.1| PREDICTED: putative disease resistance protein At1g50180-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 191 bits (485), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 200/698 (28%), Positives = 306/698 (43%), Gaps = 154/698 (22%)
Query: 8 LHDYLRNKRYLIVFEDVISSDVWDYIGKALPDHQNGSRVLAMLTCSDEIFSLCRLENGEM 67
L + L +K+YL+V +DV S + W + LP+ +NGS+VL M T + EI + NG
Sbjct: 264 LRECLNDKKYLVVMDDVWSIEAWSSLCSYLPESRNGSKVL-MTTRNKEIAAQA---NGHE 319
Query: 68 I--HLDS-------------------------------VPAGP--------LRAKYQERP 86
+ H DS VP+ + AK P
Sbjct: 320 VVGHTDSQALVYELPIMDDDESWELFLKKTFGARDNTHVPSSKTLEELGRKIVAKCNGLP 379
Query: 87 LVFLYYGRNSLVENMRLT------------WRIQKWP------LLFSIVELPQHLKLCCL 128
L + G L+ T W + + P L S +LP +LK C L
Sbjct: 380 LAIVVLG--GLLSTKERTEPSWERVLESIDWHLNRGPESCFGILALSYNDLPYYLKSCFL 437
Query: 129 YLSAFRDAFEIATKELYQLWIAEGFIPDNS----EKTAEEYLEQLISRGFIKVKKRRAGG 184
Y F + EI +L LWIAEGF+ E AE+YL +LI R ++V +++A G
Sbjct: 438 YCGIFPEDSEIKASKLIHLWIAEGFVQRRGIEKLEDIAEDYLYELIHRSMVQVARKKANG 497
Query: 185 TIKTCYISFITRGMLVLVAEFVEFVNV-------VPSTLRADRSLEDFKRISVCRTVTNF 237
+ +C I + R + + A + V P+++R R+S+ + +
Sbjct: 498 RVMSCRIHDLLRDLAISEARDAKLFEVHENIDFTFPNSIR---------RLSIHQHLIKN 548
Query: 238 DSWEHFDTYLHSFLHLT--VERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEY-P 294
+ +H L S + T +ERK +I K K L +LDLG I D P
Sbjct: 549 NISQHLHNSLRSLIFFTDPIERKDW----------RSIQKHVKLLGVLDLGRIEEDYILP 598
Query: 295 AGINPLLLLKYLVL-NIPSLKHLPSSLCNLLSLHTLDMRW--SYIHHTPDEIWKMNELRH 351
I L+ LK+L + + LPSS+ L++L L++ + SYI P IWK+ ELRH
Sbjct: 599 KEIGELIHLKFLCIKGYFNRVTLPSSIKRLVNLQNLNLGYNDSYI---PCTIWKLQELRH 655
Query: 352 LN--FGSITLPAHPGKCCSS------LENLNFISVLHPSSCTQDILGRLPSLQTFRVHEN 403
LN +G ++ KC + L NL +++ S D LG+L L+ R+
Sbjct: 656 LNCCYGEMSSQFKLNKCMNGYLGVEQLTNLQTLALPVGSWLEGDGLGKLTQLRKLRLVGP 715
Query: 404 LSSY-QSMLSNNLCPLLHLESL-----------------------KLVDERT-------- 431
L+ Y + +++ L L +L +V+E+T
Sbjct: 716 LAPYLKKGFFDSIAELTTLRTLFLGNWQVDKKKTLLNRVGLKWQENVVEEKTLLPGLMSF 775
Query: 432 --------IALQPSSIVLPEYQ--FPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKK 481
+ L LPE +PP L++L+LS EL+ DPM LEKLP LR+L L +
Sbjct: 776 SRHTYLYKVHLYGKVDKLPEQTEFYPPNLLKLTLSKCELEDDPMLILEKLPTLRILGLLR 835
Query: 482 NSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEEL 541
S+ G+K+VCS GGF L+ + L + LEE T+E AM L +L I C +K P L
Sbjct: 836 GSYVGKKMVCSCGGFLQLESLELNGLNELEELTVEEGAMCNLRTLQILSCDKMKKFPHGL 895
Query: 542 WRIKSLTKLELWWPRFELRETLRKFEDREQYDIQIYPY 579
++K L KL L +L E +++ E E I++ +
Sbjct: 896 LQMKKLEKLGLIRTSGKLIEEVQQTEGEEWDRIRLITF 933
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297745279|emb|CBI40359.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 191/653 (29%), Positives = 300/653 (45%), Gaps = 131/653 (20%)
Query: 8 LHDYLRNKRYLIVFEDVISSDVWDYIGKALPDHQNGSRVL--------AMLTCSDEIFSL 59
L +YL+ K+YL+V +DV SS+VW + LP+ ++GS+VL A+ S
Sbjct: 263 LCEYLKEKKYLVVMDDVWSSEVWSRLRSHLPEAKDGSKVLITTRNKEIALHATSQAFIYE 322
Query: 60 CRLENGE-------------------MIHLDSVPAGPLRAKYQERPL-VFLYYGRNSLVE 99
RL N + +I P + AK + PL V + G S E
Sbjct: 323 LRLMNDDESWQLFLKKTFQGTSTPHTLIRELEEPGKKIVAKCKGLPLAVVVLGGLLSTKE 382
Query: 100 NMR---------LTWRIQKWP------LLFSIVELPQHLKLCCLYLSAFRDAFEIATKEL 144
+ + W + + P L S +LP +LK C LY F + EI +L
Sbjct: 383 KTKPSWEKVLASIEWYLDQGPESCMGILALSYNDLPYYLKSCFLYCGIFPEDSEIKASKL 442
Query: 145 YQLWIAEGFIPDNSEKT----AEEYLEQLISRGFIKVKKRRAGGTIKTCYISFITRGMLV 200
+LW+AEGFI ++T AE+Y+ +LI R I+V +RR G +++C + + R + V
Sbjct: 443 IRLWLAEGFIQRRGKETLEDIAEDYMHELIHRSLIQVAERRVDGGVESCRMHDLLRDLAV 502
Query: 201 LVAEFVEFVNV-------VPSTLRADRSLEDF--KRISVCRTVTNFDSWEHFDTYLHSFL 251
L A+ +F V P ++R ++ K IS C + S L SF
Sbjct: 503 LEAKDAKFFEVHENIDFTFPISVRRLVIHQNLMKKNISKCLHNSQLRS-------LVSFS 555
Query: 252 HLTVER--KHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLN 309
T ++ ++L E + K L +L+LG + P I + LK+L +N
Sbjct: 556 ETTGKKSWRYLQEHI-------------KLLTVLELGKTNM--LPRDIGEFIHLKFLCIN 600
Query: 310 IPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGS--ITLPAHPGKCC 367
LPSS+C L++L +L++ Y P IWK+ +LRHL + I+ + KC
Sbjct: 601 GHGRVTLPSSICRLVNLQSLNLGDHY-GSIPYSIWKLQQLRHLICWNCKISGQSKTSKCV 659
Query: 368 SS------LENLNFISVLHPSSCTQDILGRLPSLQTFRVHENLSSY-QSMLSNNLCPLLH 420
+ L NL +++ S D LG+L L+ + L+ Y + ++ L
Sbjct: 660 NGYLGVEQLTNLQTLALQGGSWLEGDGLGKLTQLRKLVLGGLLTPYLKKGFFESITKLTA 719
Query: 421 LESLKL-----------------------VDERTI--ALQPSSI--------------VL 441
L++L L ++E+T+ L P S L
Sbjct: 720 LQTLALGIEKYSKKRLLNHLVGLERQKNVIEEKTLFPGLVPFSCHAYLDVVNLIGKFEKL 779
Query: 442 PE-YQF-PPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSL 499
PE ++F PP L++L L + EL+ DPM LEKLP LR L+L +++ G+K++CSSGGF L
Sbjct: 780 PEQFEFYPPNLLKLGLWDCELRDDPMMILEKLPSLRKLELGSDAYVGKKMICSSGGFLQL 839
Query: 500 KVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLEL 552
+ + L + LEE T+E AM L++L I C +K LP L ++ +L KL L
Sbjct: 840 ESLILIGLNKLEELTVEEGAMSSLKTLEIWSCGKMKKLPHGLLQLTNLEKLSL 892
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 581 | ||||||
| TAIR|locus:2025916 | 906 | AT1G59780 "AT1G59780" [Arabido | 0.734 | 0.471 | 0.306 | 7.4e-35 | |
| TAIR|locus:504956182 | 1049 | AT1G58848 [Arabidopsis thalian | 0.189 | 0.104 | 0.433 | 1.6e-27 | |
| TAIR|locus:2826978 | 1049 | AT1G59218 [Arabidopsis thalian | 0.189 | 0.104 | 0.433 | 1.6e-27 | |
| TAIR|locus:504956483 | 847 | AT3G46730 [Arabidopsis thalian | 0.678 | 0.465 | 0.279 | 5.8e-25 | |
| TAIR|locus:504956184 | 1017 | AT1G58807 "AT1G58807" [Arabido | 0.652 | 0.372 | 0.251 | 1.5e-14 | |
| TAIR|locus:2827038 | 1017 | AT1G59124 "AT1G59124" [Arabido | 0.652 | 0.372 | 0.251 | 1.5e-14 | |
| TAIR|locus:2037639 | 907 | AT1G58390 "AT1G58390" [Arabido | 0.450 | 0.288 | 0.336 | 4.7e-24 | |
| TAIR|locus:2075170 | 835 | RPP13 "RECOGNITION OF PERONOSP | 0.683 | 0.475 | 0.274 | 1.8e-23 | |
| TAIR|locus:504956186 | 1138 | AT1G58602 [Arabidopsis thalian | 0.270 | 0.137 | 0.36 | 3.9e-23 | |
| TAIR|locus:2169523 | 901 | AT5G35450 [Arabidopsis thalian | 0.499 | 0.321 | 0.287 | 4.9e-22 |
| TAIR|locus:2025916 AT1G59780 "AT1G59780" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 378 (138.1 bits), Expect = 7.4e-35, Sum P(2) = 7.4e-35
Identities = 143/467 (30%), Positives = 222/467 (47%)
Query: 112 LLFSIVELPQHLKLCCLYLSAFRDAFEIATKELYQLWIAEGFI-PDNSE-----KTAEEY 165
L S LP +LK C LYL+++ + EI + L +W AEG P N E A+ Y
Sbjct: 405 LSLSFEGLPGYLKHCLLYLASYPEDHEIEIERLSYVWAAEGITYPGNYEGATIRDVADLY 464
Query: 166 LEQLISRGFIKVKKRRAGGTIKTCYISFITRGMLVLVAEFVEFVNVV--PSTLRADRSLE 223
+E+L+ R + ++ + C + + R + +L A+ F+ +V P++ + SL
Sbjct: 465 IEELVKRNMVISERDALTSRFEKCQLHDLMREICLLKAKEENFLQIVTDPTSSSSVHSLA 524
Query: 224 DFK--RISVCRTVTNFDSWEHFDTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLR 281
+ R+ V T + ++ L S L + V S +E LR
Sbjct: 525 SSRSRRLVVYNTSIFSGENDMKNSKLRSLLFIPVGYSRFSMGSNFIE--------LPLLR 576
Query: 282 LLDLGTIVLD--EYPAGINPXXXXXXXXXNIPSLKHLPSSLCNLLSLHTLDMRWS--YIH 337
+LDL + P+ I S+ +LPSSL NL SL L++R + +
Sbjct: 577 VLDLDGAKFKGGKLPSSIGKLIHLKYLSLYQASVTYLPSSLRNLKSLLYLNLRINSGQLI 636
Query: 338 HTPDEIWKMNELRHLNF----GSITLPAHPGKCCSSLENL-NFISVLHPSSCTQDILGRL 392
+ P+ +M ELR+L+ S+T G LE L NF + SS T L R+
Sbjct: 637 NVPNVFKEMLELRYLSLPWERSSLT-KLELGNLLK-LETLINFST--KDSSVTD--LHRM 690
Query: 393 PSLQTFRVH-ENLSSYQSMLSNNLCPLLHLESLKLV-DERTIALQ-PSSI---VLPEYQ- 445
L+T ++ + LS+ L L HLE L + E ++ + P I +LP+ Q
Sbjct: 691 TKLRTLQILISGEGLHMETLSSALSMLGHLEDLTVTPSENSVQFKHPKLIYRPMLPDVQH 750
Query: 446 FPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLK 505
FP L +SL L+ DPMP LEKL L+V+ L N++ GR++VC+ GGFP L + +
Sbjct: 751 FPSHLTTISLVYCFLEEDPMPTLEKLLQLKVVSLWYNAYVGRRMVCTGGGFPPLHRLEIW 810
Query: 506 SMFWLEEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLEL 552
+ LEEW +E +MP L +L I C LK +P+ L I SL +L +
Sbjct: 811 GLDALEEWIVEEGSMPLLHTLHIVDCKKLKEIPDGLRFISSLKELAI 857
|
|
| TAIR|locus:504956182 AT1G58848 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 229 (85.7 bits), Expect = 1.6e-27, Sum P(3) = 1.6e-27
Identities = 49/113 (43%), Positives = 71/113 (62%)
Query: 443 EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVM 502
E FP L L L + L+ DPMP LEKL L+ L+L++ SF G+++VCSSGGFP L+ +
Sbjct: 772 EQHFPSHLTTLYLQHCRLEEDPMPILEKLHQLKELELRRKSFSGKEMVCSSGGFPQLQKL 831
Query: 503 HLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEELWRIKS-LTKLELWW 554
+K + E+W +E +MP L +L I C LK LP+E + S LT + L++
Sbjct: 832 SIKGLEEWEDWKVEESSMPVLHTLDIRDCRKLKQLPDE--HLPSHLTSISLFF 882
|
|
| TAIR|locus:2826978 AT1G59218 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 229 (85.7 bits), Expect = 1.6e-27, Sum P(3) = 1.6e-27
Identities = 49/113 (43%), Positives = 71/113 (62%)
Query: 443 EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVM 502
E FP L L L + L+ DPMP LEKL L+ L+L++ SF G+++VCSSGGFP L+ +
Sbjct: 772 EQHFPSHLTTLYLQHCRLEEDPMPILEKLHQLKELELRRKSFSGKEMVCSSGGFPQLQKL 831
Query: 503 HLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEELWRIKS-LTKLELWW 554
+K + E+W +E +MP L +L I C LK LP+E + S LT + L++
Sbjct: 832 SIKGLEEWEDWKVEESSMPVLHTLDIRDCRKLKQLPDE--HLPSHLTSISLFF 882
|
|
| TAIR|locus:504956483 AT3G46730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 275 (101.9 bits), Expect = 5.8e-25, Sum P(2) = 5.8e-25
Identities = 122/437 (27%), Positives = 194/437 (44%)
Query: 115 SIVELPQHLKLCCLYLSAFRDAFEIATKELYQLWIAEGFIPDNSEKTAEE----YLEQLI 170
S E+ LKLC LY S F + +EI ++L L +AEGFI ++ E E+ Y+++L+
Sbjct: 409 SFKEMRHELKLCFLYFSVFPEDYEIKVEKLIHLLVAEGFIQEDEEMMMEDVARCYIDELV 468
Query: 171 SRGFIKVKKRRAGGTIKTCYISFITRGMLVLVAEFVEFVNVVPSTLRADRSLEDFKRISV 230
R +K + R G + +C I + R + + A+ + FVNV + D R V
Sbjct: 469 DRSLVKAE-RIERGKVMSCRIHDLLRDLAIKKAKELNFVNVYNEKQHSS----DICRREV 523
Query: 231 CRTVTNFDSW---EHFDTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDL-G 286
+ N D + + + SFL + ER+ Y N K LR+L++ G
Sbjct: 524 VHHLMN-DYYLCDRRVNKRMRSFLFIG-ERRGFG-------YVNTTNLKLKLLRVLNMEG 574
Query: 287 TIVLDEYPAGINPXXXXXXXXXNIPSLKH-----LPSSLCNLLSLHTLDMRWSYIHHTPD 341
+ + + + P + LP+S+ NL L TLD +
Sbjct: 575 LLFVSKNISNTLPDVIGELIHLRYLGIADTYVSILPASISNLRFLQTLDASGNDPFQYTT 634
Query: 342 EIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPSSCTQDILGRLPSLQTFRVH 401
++ K+ LRH+ G G+ + L+ L IS S ++L L L+ + H
Sbjct: 635 DLSKLTSLRHV-IGKFVGECLIGEGVN-LQTLRSISSYSWSKLNHELLRNLQDLEIYD-H 691
Query: 402 ENLSSYQSMLSN--NLCPLLHLESLKLVDERTIALQPSS---IVLPEYQFPPRLIELSLS 456
+ + N + +L LKL + R L S I L + FP L L+L
Sbjct: 692 SKWVDQRRVPLNFVSFSKPKNLRVLKL-EMRNFKLSSESRTTIGLVDVNFPS-LESLTLV 749
Query: 457 NTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVC-SSGGFPSLKVMHLKSM----FWLE 511
T L+ + MPAL+KLP L L LK ++ G K++ S+ GF LK + + SM L+
Sbjct: 750 GTTLEENSMPALQKLPRLEDLVLKDCNYSGVKIMSISAQGFGRLKNLEM-SMERRGHGLD 808
Query: 512 EWTMENDAMPKLESLII 528
E +E +AMP L L +
Sbjct: 809 ELRIEEEAMPSLIKLTV 825
|
|
| TAIR|locus:504956184 AT1G58807 "AT1G58807" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 222 (83.2 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 104/414 (25%), Positives = 178/414 (42%)
Query: 165 YLEQLISRGFIKVKKRRAGGTIKTCYISFITRGMLVLVAEFVEFVNVV---PSTLRADRS 221
Y+E+L+ R + ++ +TC++ + R + +L A+ F+ + PST +
Sbjct: 472 YIEELVRRNMVISERDVKTSRFETCHLHDMMREVCLLKAKEENFLQITSSRPSTANLQST 531
Query: 222 LEDFKRISVCRTVTNFDSWEHFDTYLHSFLHLTVERKHLSEDVFT-LEYCNAI------C 274
+ + + T + + + + L + + +T+ +L+ FT LE +
Sbjct: 532 VTSRRFVYQYPTTLHVEK-DINNPKLRALVVVTLGSWNLAGSSFTRLELLRVLDLIEVKI 590
Query: 275 KWFKF---------LRLLDLGTIVLDEYPAGI-NPXXXXXXXXXNIPSLKHLPSSLCNLL 324
K K LR L L + P + N + +P+ L +
Sbjct: 591 KGGKLASCIGKLIHLRYLSLEYAEVTHIPYSLGNLKLLIYLNLASFGRSTFVPNVLMGMQ 650
Query: 325 SLHTLDMRWSYIHHTPDEIWKMNELRHL-NFGS--ITLPAHPGKCCSSLENLNFISVLHP 381
L L + T E+ + +L L NF + +L G S N+ I
Sbjct: 651 ELRYLALPSDMGRKTKLELSNLVKLETLENFSTENSSLEDLCGMVRLSTLNIKLIEETSL 710
Query: 382 SSCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVL 441
+ I G L L+ ++++ S ++ + + +HL+ L L P +
Sbjct: 711 ETLAASI-GGLKYLEKLEIYDHGSEMRTKEAGIVFDFVHLKRLWLK-----LYMPR--LS 762
Query: 442 PEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKV 501
E FP L L L + L+ DPMP LEKL L+ L+L SF G+K+VCSSGGFP L+
Sbjct: 763 TEQHFPSHLTTLYLESCRLEEDPMPILEKLLQLKELELGFESFSGKKMVCSSGGFPQLQR 822
Query: 502 MHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEELWRIKS-LTKLELWW 554
+ L + E+W +E +MP L +L I C LK LP+E + S LT + L++
Sbjct: 823 LSLLKLEEWEDWKVEESSMPLLRTLDIQVCRKLKQLPDE--HLPSHLTSISLFF 874
|
|
| TAIR|locus:2827038 AT1G59124 "AT1G59124" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 222 (83.2 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 104/414 (25%), Positives = 178/414 (42%)
Query: 165 YLEQLISRGFIKVKKRRAGGTIKTCYISFITRGMLVLVAEFVEFVNVV---PSTLRADRS 221
Y+E+L+ R + ++ +TC++ + R + +L A+ F+ + PST +
Sbjct: 472 YIEELVRRNMVISERDVKTSRFETCHLHDMMREVCLLKAKEENFLQITSSRPSTANLQST 531
Query: 222 LEDFKRISVCRTVTNFDSWEHFDTYLHSFLHLTVERKHLSEDVFT-LEYCNAI------C 274
+ + + T + + + + L + + +T+ +L+ FT LE +
Sbjct: 532 VTSRRFVYQYPTTLHVEK-DINNPKLRALVVVTLGSWNLAGSSFTRLELLRVLDLIEVKI 590
Query: 275 KWFKF---------LRLLDLGTIVLDEYPAGI-NPXXXXXXXXXNIPSLKHLPSSLCNLL 324
K K LR L L + P + N + +P+ L +
Sbjct: 591 KGGKLASCIGKLIHLRYLSLEYAEVTHIPYSLGNLKLLIYLNLASFGRSTFVPNVLMGMQ 650
Query: 325 SLHTLDMRWSYIHHTPDEIWKMNELRHL-NFGS--ITLPAHPGKCCSSLENLNFISVLHP 381
L L + T E+ + +L L NF + +L G S N+ I
Sbjct: 651 ELRYLALPSDMGRKTKLELSNLVKLETLENFSTENSSLEDLCGMVRLSTLNIKLIEETSL 710
Query: 382 SSCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVL 441
+ I G L L+ ++++ S ++ + + +HL+ L L P +
Sbjct: 711 ETLAASI-GGLKYLEKLEIYDHGSEMRTKEAGIVFDFVHLKRLWLK-----LYMPR--LS 762
Query: 442 PEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKV 501
E FP L L L + L+ DPMP LEKL L+ L+L SF G+K+VCSSGGFP L+
Sbjct: 763 TEQHFPSHLTTLYLESCRLEEDPMPILEKLLQLKELELGFESFSGKKMVCSSGGFPQLQR 822
Query: 502 MHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEELWRIKS-LTKLELWW 554
+ L + E+W +E +MP L +L I C LK LP+E + S LT + L++
Sbjct: 823 LSLLKLEEWEDWKVEESSMPLLRTLDIQVCRKLKQLPDE--HLPSHLTSISLFF 874
|
|
| TAIR|locus:2037639 AT1G58390 "AT1G58390" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 291 (107.5 bits), Expect = 4.7e-24, Sum P(2) = 4.7e-24
Identities = 97/288 (33%), Positives = 137/288 (47%)
Query: 294 PAGINPXXXXXXXXXNIPSLKHLPSSLCNLLSLH--TLDMRWSYIHHTPDEIWKMNELRH 351
P GI + HLPSSL NL+ L LD+ +I PD +M+ELR+
Sbjct: 602 PFGIGNLIHLRYLSLQDAKVSHLPSSLGNLMLLIYLNLDVDTEFIF-VPDVFMRMHELRY 660
Query: 352 LNFG-SITLPAHPG-KCCSSLENLNFISVLHPSSCTQDILGRLPSLQTFRVHENLSSYQS 409
L + + LE L + S H SS +D+ G + L T + +
Sbjct: 661 LKLPLHMHKKTRLSLRNLVKLETLVYFSTWHSSS--KDLCG-MTRLMTLAIRLTRVTSTE 717
Query: 410 MLSNNLCPLLHLESLKLVDERTIALQPSSIVL--------------PEYQ-FPPRLIELS 454
LS ++ L +LE L +V + ++ IVL P Q FP RL +
Sbjct: 718 TLSASISGLRNLEYLYIVGTHSKKMREEGIVLDFIHLKHLLLDLYMPRQQHFPSRLTFVK 777
Query: 455 LSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWT 514
LS L+ DPMP LEKL HL+ + L K S+ GR++VCS GGFP LK + + + EEW
Sbjct: 778 LSECGLEEDPMPILEKLLHLKGVILLKGSYCGRRMVCSGGGFPQLKKLEIVGLNKWEEWL 837
Query: 515 MENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLEL---WWPRFEL 559
+E +MP LE+L I C LK +P+ L I SL + L W +F +
Sbjct: 838 VEEGSMPLLETLSILDCEELKEIPDGLRFIYSLELVMLGTRWKKKFSV 885
|
|
| TAIR|locus:2075170 RPP13 "RECOGNITION OF PERONOSPORA PARASITICA 13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 255 (94.8 bits), Expect = 1.8e-23, Sum P(2) = 1.8e-23
Identities = 119/433 (27%), Positives = 195/433 (45%)
Query: 111 PLLF--SIVELPQHLKLCCLYLSAFRDAFEIATKELYQLWIAEGFIPDNSEKTAEE---- 164
P++F S EL KLC LYLS F + +EI ++L L +AEGFI + E E+
Sbjct: 403 PIVFDLSFKELRHESKLCFLYLSIFPEDYEIDLEKLIHLLVAEGFIQGDEEMMMEDVARY 462
Query: 165 YLEQLISRGFIKVKKRRAGGTIKTCYISFITRGMLVLVAEFVEFVNVVPSTLRADRSLED 224
Y+E+LI R ++ RR G + +C I + R + + ++ + FVNV + A S
Sbjct: 463 YIEELIDRSLLEAV-RRERGKVMSCRIHDLLRDVAIKKSKELNFVNVYNDHV-AQHSSTT 520
Query: 225 FKRISVCRTVTNFDSWEHFDTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLD 284
+R V + S + + + SFL+ E HL L++ + K LR+LD
Sbjct: 521 CRREVVHHQFKRYSSEKRKNKRMRSFLYFG-EFDHL----VGLDF-----ETLKLLRVLD 570
Query: 285 LGTIVLDEYPAGINPXXXXXXXXXNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIW 344
G++ L G N + + + + L L TL + +Y ++
Sbjct: 571 FGSLWLPFKINGDLIHLRYLGIDGNSINDFDIAAIISKLRFLQTLFVSDNYFIEETIDLR 630
Query: 345 KMNELRHL--NF-GSITLPAHPGKCCSSLENLNFISVLHPSSCTQDILGRLPSLQTFRVH 401
K+ LRH+ NF G + + G ++L+ L IS + ++L L L +
Sbjct: 631 KLTSLRHVIGNFFGGLLI----GDV-ANLQTLTSISFDSWNKLKPELLINLRDLG---IS 682
Query: 402 ENLSSYQSMLSNNLCPLLHLESLKLVDERT-----IALQPSSIVLPEYQFPPRLIELSLS 456
E S + + + L LESL+++ T ++L+ V L ++L
Sbjct: 683 EMSRSKERRVHVSWASLTKLESLRVLKLATPTEVHLSLESEEAVRSMDVISRSLESVTLV 742
Query: 457 NTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTME 516
+ DPMP L+K+P L L L ++ G K+ S GF L+ + L M L+E +E
Sbjct: 743 GITFEEDPMPFLQKMPRLEDLILLSCNYSG-KMSVSEQGFGRLRKLDLL-MRSLDELQIE 800
Query: 517 NDAMPKLESLIIN 529
+AMP L L I+
Sbjct: 801 EEAMPNLIELEIS 813
|
|
| TAIR|locus:504956186 AT1G58602 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 205 (77.2 bits), Expect = 3.9e-23, Sum P(3) = 3.9e-23
Identities = 63/175 (36%), Positives = 88/175 (50%)
Query: 390 GRLPSLQTFRVHENLSSYQSMLSNNLCPL--LHLESLKLVDERTIALQPSSIVL------ 441
G +P L T + L + L N L LHL ++ +E I Q S +L
Sbjct: 938 GSMPRLHTLEIRRCLKLKK--LPNGFPQLQNLHLTEVEEWEEGMIVKQGSMPLLHTLYIW 995
Query: 442 --P----EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGG 495
P E FP L + L ++ DPM LEKL HL+ + L + SF G+++VCS GG
Sbjct: 996 HCPKLPGEQHFPSHLTTVFLLGMYVEEDPMRILEKLLHLKNVSLFQ-SFSGKRMVCSGGG 1054
Query: 496 FPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKL 550
FP L+ + ++ + W EEW +E +MP L +L I C LK LP+ L I SL L
Sbjct: 1055 FPQLQKLSIREIEW-EEWIVEQGSMPLLHTLYIGVCPNLKELPDGLRFIYSLKNL 1108
|
|
| TAIR|locus:2169523 AT5G35450 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 273 (101.2 bits), Expect = 4.9e-22, Sum P(2) = 4.9e-22
Identities = 87/303 (28%), Positives = 138/303 (45%)
Query: 280 LRLLDLGTIVLDEYPAGINPXXXXXXXXXNIPS--LKHLPSSLCNLLSLHTLDMRWSYIH 337
LR L L V+ P+ I ++ H+P+ L +L L L +
Sbjct: 595 LRFLSLHQAVVSHLPSTIRNLKLMLYLNLHVAIGVPVHVPNVLKEMLELRYLSLPLDMHD 654
Query: 338 HTPDEIWKMNELRHLNFGSITLPAHPGKC-CSSLENLNFISVLHPSSCTQDILGRLPSLQ 396
T E+ + L +L S H + L F V CT + L SL+
Sbjct: 655 KTKLELGDLVNLEYLWCFSTQ---HSSVTDLLRMTKLRFFGVSFSERCTFENLSS--SLR 709
Query: 397 TFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVLPE-YQFPPRLIELSL 455
FR E LS S + + L + + ++L +P+ +Q PP + + L
Sbjct: 710 QFRKLETLSFIYSR-KTYMVDYVGEFVLDFIHLKKLSLGVHLSKIPDQHQLPPHIAHIYL 768
Query: 456 SNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTM 515
++ DPMP LEKL HL+ ++L++ +F GR++VCS GGFP L+ + + LEEW +
Sbjct: 769 LFCHMEEDPMPILEKLLHLKSVELRRKAFIGRRMVCSKGGFPQLRALQISEQSELEEWIV 828
Query: 516 ENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPRFELRETLRKFEDREQYDIQ 575
E +MP L LII+ C L+ LP+ L + SL +L++ + E +E K + Y +Q
Sbjct: 829 EEGSMPCLRDLIIHSCEKLEELPDGLKYVTSLKELKIEGMKREWKE---KLVGEDYYKVQ 885
Query: 576 IYP 578
P
Sbjct: 886 HIP 888
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 581 | |||
| pfam00931 | 285 | pfam00931, NB-ARC, NB-ARC domain | 8e-07 | |
| pfam00931 | 285 | pfam00931, NB-ARC, NB-ARC domain | 1e-05 |
| >gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 8e-07
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 2 EQRKTALHDYLRNKRYLIVFEDVISSDVWDYIGKALPDHQNGSRVLAMLTCSDE 55
+ + + L KR+L+V +DV + WD IG PD +NGSRV ++T E
Sbjct: 87 SELAVKIKEALLRKRFLLVLDDVWEKNDWDKIGVPFPDGENGSRV--IVTTRSE 138
|
Length = 285 |
| >gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 112 LLFSIVELPQHLKLCCLYLSAFRDAFEIATKELYQLWIAEGFIP 155
L S LP HLK C LYL+ F + + I ++L +LWIAEGF+
Sbjct: 238 LSLSYDNLPMHLKRCFLYLALFPEDYNIRKEQLIKLWIAEGFVI 281
|
Length = 285 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 581 | |||
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 100.0 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.95 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.95 | |
| PF00931 | 287 | NB-ARC: NB-ARC domain; InterPro: IPR002182 This is | 99.94 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.92 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.89 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.87 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.86 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.83 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.8 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.78 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.75 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.68 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.67 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.64 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.64 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.61 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.6 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.59 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.55 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.51 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.48 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.3 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.28 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.0 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.98 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.97 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.95 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.95 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.93 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.91 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.89 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.88 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.79 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.78 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.76 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.76 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.72 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.59 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.52 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.38 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.37 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.37 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.33 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.26 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.22 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.13 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 98.06 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.95 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.94 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.82 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.8 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.79 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 97.79 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.75 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.71 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 97.67 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.64 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.63 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 97.48 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.45 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.19 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.14 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 97.02 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 96.92 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.64 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.59 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.23 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.13 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.79 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.01 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 94.06 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 93.6 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 93.37 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 93.26 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 93.22 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 92.6 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 91.55 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 91.36 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 88.89 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 88.89 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 88.73 | |
| PF13173 | 128 | AAA_14: AAA domain | 88.47 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 88.42 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 87.66 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 87.66 | |
| PF05729 | 166 | NACHT: NACHT domain | 84.46 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 81.91 | |
| TIGR00635 | 305 | ruvB Holliday junction DNA helicase, RuvB subunit. | 81.85 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 81.13 |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-67 Score=577.39 Aligned_cols=522 Identities=26% Similarity=0.380 Sum_probs=385.3
Q ss_pred hHHHHHHHHHhcCceEEEEEEcCCChhHHHHHHhhCCCCCCCCEEEEeCCCh--------------------HHHHHhc-
Q 035853 2 EQRKTALHDYLRNKRYLIVFEDVISSDVWDYIGKALPDHQNGSRVLAMLTCS--------------------DEIFSLC- 60 (581)
Q Consensus 2 ~~l~~~l~~~L~~kr~LlVLDDv~~~~~~~~l~~~~~~~~~gs~iivTtr~~--------------------~~~~~Lf- 60 (581)
++++..|.+.|++|||+|||||||++.+|+.++.|+|...+||||++|||+. +|||.||
T Consensus 248 ~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~ 327 (889)
T KOG4658|consen 248 DELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQ 327 (889)
T ss_pred HHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHH
Confidence 4789999999999999999999999999999999999998899999999981 9999999
Q ss_pred cc-ccCccccCCC-CChh-hHHhhcCCcchhhhhhccc-----cc--eeccc--ccccc-------c---ccceeccccC
Q 035853 61 RL-ENGEMIHLDS-VPAG-PLRAKYQERPLVFLYYGRN-----SL--VENMR--LTWRI-------Q---KWPLLFSIVE 118 (581)
Q Consensus 61 ~~-f~~~~~~~~~-~~~~-~i~~~c~GlPLal~~~g~~-----t~--~~~~~--~~~~~-------~---~~~L~~sY~~ 118 (581)
+. |......++. +++| +||++|+|+|||++++|+. |+ |+..- +.+.+ . +++|++|||+
T Consensus 328 ~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~ 407 (889)
T KOG4658|consen 328 KKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDN 407 (889)
T ss_pred HhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhh
Confidence 77 6653325566 9999 9999999999999999999 22 22220 02221 1 7999999999
Q ss_pred chhhhHHHHhhhcccCCCceechHHHHHHHHhcCCCCC-----ChHHHHHHHHHHHHhCCceeeeeccCCCCEeEEEeCh
Q 035853 119 LPQHLKLCCLYLSAFRDAFEIATKELYQLWIAEGFIPD-----NSEKTAEEYLEQLISRGFIKVKKRRAGGTIKTCYISF 193 (581)
Q Consensus 119 L~~~lk~cFl~~a~Fp~~~~i~~~~Li~~w~a~g~i~~-----~~~~~~~~~~~~L~~~~ll~~~~~~~~g~~~~~~mHd 193 (581)
||+++|.||+|||+||+||+|++++||.+||||||+.+ ++++.|+.|+.+||++||++..+.. ++..+|+|||
T Consensus 408 L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHD 485 (889)
T KOG4658|consen 408 LPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE--GRKETVKMHD 485 (889)
T ss_pred hhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeH
Confidence 99999999999999999999999999999999999976 7789999999999999999988754 6778999999
Q ss_pred HHHHHHHHhcc-----ccccc-c-CCCCc-cccCCCCCCeeEEEEEecccCCCccccc-CCcccEEEEecccc-cccccc
Q 035853 194 ITRGMLVLVAE-----FVEFV-N-VVPST-LRADRSLEDFKRISVCRTVTNFDSWEHF-DTYLHSFLHLTVER-KHLSED 263 (581)
Q Consensus 194 li~dl~~~i~~-----~e~~~-~-~~~~~-~~~~~~~~~~r~lsl~~~~~~~~~~~~~-~~~Lr~L~l~~~~~-~~~~~~ 263 (581)
+|||||.++|. +|+.+ . +.+.. .+....+..+||++++ +.......... ++++++|.+.++.. ..
T Consensus 486 vvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~-~~~~~~~~~~~~~~~L~tLll~~n~~~l~---- 560 (889)
T KOG4658|consen 486 VVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLM-NNKIEHIAGSSENPKLRTLLLQRNSDWLL---- 560 (889)
T ss_pred HHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEe-ccchhhccCCCCCCccceEEEeecchhhh----
Confidence 99999999999 56544 2 21222 2244467889999999 77766677777 88999999999863 11
Q ss_pred hhhhhhhHHHhccCCceeEEEecCcc-cccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCC-cccccch
Q 035853 264 VFTLEYCNAICKWFKFLRLLDLGTIV-LDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWS-YIHHTPD 341 (581)
Q Consensus 264 ~~~~~~~~~~~~~~~~Lr~L~L~~~~-l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~-~l~~lp~ 341 (581)
... ..+|..++.||+|||++|. +.++|.+|+.|.|||||+++++.+..+|.++++|..|.+|++..+ .+..+|.
T Consensus 561 -~is---~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~ 636 (889)
T KOG4658|consen 561 -EIS---GEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPG 636 (889)
T ss_pred -hcC---HHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccc
Confidence 233 6789999999999999877 679999999999999999999999999999999999999999999 5666666
Q ss_pred hhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC---CcchhhhCCCCCCC----eEEEeeecccchhchhhh
Q 035853 342 EIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS---SCTQDILGRLPSLQ----TFRVHENLSSYQSMLSNN 414 (581)
Q Consensus 342 ~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~---~~~~~~l~~l~~L~----~L~l~~~~~~~~~~l~~~ 414 (581)
....|.+||+|.+...... .....++.+.+|++|....+. ..+...+..+.+|+ .+.+.++ .....+..
T Consensus 637 i~~~L~~Lr~L~l~~s~~~-~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~---~~~~~~~~ 712 (889)
T KOG4658|consen 637 ILLELQSLRVLRLPRSALS-NDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGC---SKRTLISS 712 (889)
T ss_pred hhhhcccccEEEeeccccc-cchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccc---ccceeecc
Confidence 5666999999988655421 111223444455555444433 22223334444444 2332222 44556667
Q ss_pred cCCCCCCCEEEeecCCc--c---------cC------Ccccc------cCC-CCCCCCCccEEEEeeccCCCCCcccccC
Q 035853 415 LCPLLHLESLKLVDERT--I---------AL------QPSSI------VLP-EYQFPPRLIELSLSNTELKYDPMPALEK 470 (581)
Q Consensus 415 l~~~~~L~~L~l~~~~~--i---------~L------~~l~l------~lp-~~~~l~~L~~L~L~~~~l~~~~~~~l~~ 470 (581)
+..+.+|+.|.+..++. + .+ ....+ ..+ |....++|+.|.+..|....++++....
T Consensus 713 ~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~ 792 (889)
T KOG4658|consen 713 LGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKA 792 (889)
T ss_pred cccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHH
Confidence 77888888888887432 1 00 00001 233 5556788888888888777777777777
Q ss_pred CCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccCc----ccccccceEeeccC-cCCCCCcc
Q 035853 471 LPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMEN----DAMPKLESLIINPC-AYLKILPE 539 (581)
Q Consensus 471 l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~----~~l~~L~~L~l~~c-~~l~~lp~ 539 (581)
+..+..+.+..+.+.+.......++|+++..+.+.+- .+++|.... +.+|.+.++.+.+| +.+..+|.
T Consensus 793 ~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~-~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~ 865 (889)
T KOG4658|consen 793 LLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFL-KLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPD 865 (889)
T ss_pred hhhcccEEecccccccceeeecCCCCceeEecccCcc-chhheehhcCcccccCccccccceeccccceeecCC
Confidence 7777666665555554433444556666665555543 244443333 44555555555554 44444443
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-56 Score=515.99 Aligned_cols=515 Identities=17% Similarity=0.134 Sum_probs=319.4
Q ss_pred HHHHHHhcCceEEEEEEcCCChhHHHHHHhhCCCCCCCCEEEEeCCC------------h-------HHHHHhc-cc-cc
Q 035853 6 TALHDYLRNKRYLIVFEDVISSDVWDYIGKALPDHQNGSRVLAMLTC------------S-------DEIFSLC-RL-EN 64 (581)
Q Consensus 6 ~~l~~~L~~kr~LlVLDDv~~~~~~~~l~~~~~~~~~gs~iivTtr~------------~-------~~~~~Lf-~~-f~ 64 (581)
..++++|++||+||||||||+.++|+.+.....|+++|||||||||+ | +|||+|| ++ |+
T Consensus 287 ~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~ 366 (1153)
T PLN03210 287 GAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFK 366 (1153)
T ss_pred HHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcC
Confidence 46789999999999999999999999999988999999999999998 1 8999999 88 87
Q ss_pred CccccCCC-CChh-hHHhhcCCcchhhhhhccc-c-----ceeccccccccc-------ccceeccccCchh-hhHHHHh
Q 035853 65 GEMIHLDS-VPAG-PLRAKYQERPLVFLYYGRN-S-----LVENMRLTWRIQ-------KWPLLFSIVELPQ-HLKLCCL 128 (581)
Q Consensus 65 ~~~~~~~~-~~~~-~i~~~c~GlPLal~~~g~~-t-----~~~~~~~~~~~~-------~~~L~~sY~~L~~-~lk~cFl 128 (581)
.+. +.++ ++++ +||++|+|+|||++++|+. . .|++. ...+. +++|++||++|++ ..|.||+
T Consensus 367 ~~~-~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~--l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl 443 (1153)
T PLN03210 367 KNS-PPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDM--LPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFR 443 (1153)
T ss_pred CCC-CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHH--HHHHHhCccHHHHHHHHHhhhccCccchhhhhh
Confidence 643 3333 8899 9999999999999999999 1 34433 32222 7899999999987 5999999
Q ss_pred hhcccCCCceechHHHHHHHHhcCCCCCChHHHHHHHHHHHHhCCceeeeeccCCCCEeEEEeChHHHHHHHHhcccccc
Q 035853 129 YLSAFRDAFEIATKELYQLWIAEGFIPDNSEKTAEEYLEQLISRGFIKVKKRRAGGTIKTCYISFITRGMLVLVAEFVEF 208 (581)
Q Consensus 129 ~~a~Fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~~L~~~~ll~~~~~~~~g~~~~~~mHdli~dl~~~i~~~e~~ 208 (581)
||||||+++.+ +.|..|+|.+.+. ++..++.|+++||+++.. ..++|||++|+||+++++++..
T Consensus 444 ~ia~ff~~~~~---~~v~~~l~~~~~~------~~~~l~~L~~ksLi~~~~-------~~~~MHdLl~~~~r~i~~~~~~ 507 (1153)
T PLN03210 444 HIACLFNGEKV---NDIKLLLANSDLD------VNIGLKNLVDKSLIHVRE-------DIVEMHSLLQEMGKEIVRAQSN 507 (1153)
T ss_pred eehhhcCCCCH---HHHHHHHHhcCCC------chhChHHHHhcCCEEEcC-------CeEEhhhHHHHHHHHHHHhhcC
Confidence 99999999744 4577888877663 334589999999998754 3599999999999999987641
Q ss_pred c--------cCCCCcc--ccCCCCCCeeEEEEEecccCCC-c-cccc--CCcccEEEEeccccccc--ccchhhhhhhHH
Q 035853 209 V--------NVVPSTL--RADRSLEDFKRISVCRTVTNFD-S-WEHF--DTYLHSFLHLTVERKHL--SEDVFTLEYCNA 272 (581)
Q Consensus 209 ~--------~~~~~~~--~~~~~~~~~r~lsl~~~~~~~~-~-~~~~--~~~Lr~L~l~~~~~~~~--~~~~~~~~~~~~ 272 (581)
. +..+... .......+++.+++......+. + ...+ +++|+.|.+........ ..+ .+ +.
T Consensus 508 ~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~--~l---p~ 582 (1153)
T PLN03210 508 EPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRW--HL---PE 582 (1153)
T ss_pred CCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEeccccccccccee--ec---Cc
Confidence 1 1000000 0111345677777762222111 1 1223 77888887765431100 000 01 12
Q ss_pred HhccC-CceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCC-cccccchhhhcCCCCc
Q 035853 273 ICKWF-KFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWS-YIHHTPDEIWKMNELR 350 (581)
Q Consensus 273 ~~~~~-~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~-~l~~lp~~i~~l~~L~ 350 (581)
.+..+ ++||.|.+.++.++.+|..+ ...+|+.|+++++.+..+|..+..+++|+.|++++| .+..+|. ++.+++|+
T Consensus 583 ~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le 660 (1153)
T PLN03210 583 GFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLE 660 (1153)
T ss_pred chhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCccc
Confidence 22222 23555555555555555444 334555555555555555555555555555555554 3444443 44455555
Q ss_pred EeecCCcccCCCCCCccCCCCCCcEeceecCC--CcchhhhCCCCCCCeEEEeeecccchh-------------------
Q 035853 351 HLNFGSITLPAHPGKCCSSLENLNFISVLHPS--SCTQDILGRLPSLQTFRVHENLSSYQS------------------- 409 (581)
Q Consensus 351 ~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~------------------- 409 (581)
.|++++|.....+|..++++++|+.|++.+|. ..+|..+ ++++|+.|++++|. ...
T Consensus 661 ~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~--~L~~~p~~~~nL~~L~L~~n~i 737 (1153)
T PLN03210 661 TLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCS--RLKSFPDISTNISWLDLDETAI 737 (1153)
T ss_pred EEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCC--CccccccccCCcCeeecCCCcc
Confidence 55555554444555555555555555555544 3333322 34455555555443 222
Q ss_pred -chhhhcCCCCCCCEEEeecCC--cc----------------cCCccc------c-cCC-CCCCCCCccEEEEeeccCCC
Q 035853 410 -MLSNNLCPLLHLESLKLVDER--TI----------------ALQPSS------I-VLP-EYQFPPRLIELSLSNTELKY 462 (581)
Q Consensus 410 -~l~~~l~~~~~L~~L~l~~~~--~i----------------~L~~l~------l-~lp-~~~~l~~L~~L~L~~~~l~~ 462 (581)
.+|..+ .+++|++|.+.... .+ .|+.+. + .+| +++.+++|+.|+|++|....
T Consensus 738 ~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~ 816 (1153)
T PLN03210 738 EEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLE 816 (1153)
T ss_pred ccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcC
Confidence 223222 22333333332200 00 011100 1 345 55555555555555553222
Q ss_pred CCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccCcccccccceEeeccCcCCCCCccccc
Q 035853 463 DPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEELW 542 (581)
Q Consensus 463 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~ 542 (581)
..+..+ ++++|+.|++++|...... + ...++|+.|+++++ .++.+|..++.+++|+.|++++|+.++.+|..+.
T Consensus 817 ~LP~~~-~L~sL~~L~Ls~c~~L~~~-p---~~~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~ 890 (1153)
T PLN03210 817 TLPTGI-NLESLESLDLSGCSRLRTF-P---DISTNISDLNLSRT-GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNIS 890 (1153)
T ss_pred eeCCCC-CccccCEEECCCCCccccc-c---ccccccCEeECCCC-CCccChHHHhcCCCCCEEECCCCCCcCccCcccc
Confidence 222222 4555555555554332211 1 12346667777665 5667788888999999999999999999999999
Q ss_pred CCCCccEEEeeCCC
Q 035853 543 RIKSLTKLELWWPR 556 (581)
Q Consensus 543 ~l~~L~~L~l~~c~ 556 (581)
.+++|+.+++++|+
T Consensus 891 ~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 891 KLKHLETVDFSDCG 904 (1153)
T ss_pred cccCCCeeecCCCc
Confidence 99999999999998
|
syringae 6; Provisional |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-27 Score=273.34 Aligned_cols=321 Identities=20% Similarity=0.184 Sum_probs=199.5
Q ss_pred CCeeEEEEEecccCCCccccc--CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccc-cCCCcccC
Q 035853 223 EDFKRISVCRTVTNFDSWEHF--DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLD-EYPAGINP 299 (581)
Q Consensus 223 ~~~r~lsl~~~~~~~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~-~lp~~i~~ 299 (581)
.+++.+.+..+......+..+ +++|++|.+.++.... ..+ ...+..+++||+|++++|.+. .+|. +.
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~-----~ip---~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~ 138 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSG-----PIP---DDIFTTSSSLRYLNLSNNNFTGSIPR--GS 138 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCC-----cCC---hHHhccCCCCCEEECcCCccccccCc--cc
Confidence 456667666222222233333 7777777777765432 122 344556777777777777665 4442 34
Q ss_pred cCCCcEEeccCCCCc-ccChhhhcccCCcEEEecCCcc-cccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEec
Q 035853 300 LLLLKYLVLNIPSLK-HLPSSLCNLLSLHTLDMRWSYI-HHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFIS 377 (581)
Q Consensus 300 l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~l-~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 377 (581)
+++|++|++++|.+. .+|..++++++|++|++++|.+ ..+|..++++++|++|++++|.+.+.+|..++++++|++|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 566666666666665 5666666666666666666643 45666666666666666666666666666666666666666
Q ss_pred eecCC--CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCC---cc--------cCCc-----ccc
Q 035853 378 VLHPS--SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDER---TI--------ALQP-----SSI 439 (581)
Q Consensus 378 l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~---~i--------~L~~-----l~l 439 (581)
+.++. ...+..++.+++|+.|++++|. ....+|..+.++++|+.|+++++. .+ +|+. ..+
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~--l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 296 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNN--LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCce--eccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee
Confidence 66665 4555666666666666666664 445556666666666666666532 00 1111 113
Q ss_pred --cCC-CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccC
Q 035853 440 --VLP-EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTME 516 (581)
Q Consensus 440 --~lp-~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~ 516 (581)
.+| ++..+++|++|++++|.+.+..+..++.+++|+.|++++|.+.+.. +..++.+++|+.|++++|.....+|..
T Consensus 297 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~~~~L~~L~Ls~n~l~~~~p~~ 375 (968)
T PLN00113 297 SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI-PKNLGKHNNLTVLDLSTNNLTGEIPEG 375 (968)
T ss_pred ccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcC-ChHHhCCCCCcEEECCCCeeEeeCChh
Confidence 455 5666667777777666666666666666777777777666655433 444556677777777776544456666
Q ss_pred cccccccceEeeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 517 NDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 517 ~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
+..+++|+.|++++|+....+|..+..+++|+.|++.+|.
T Consensus 376 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~ 415 (968)
T PLN00113 376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS 415 (968)
T ss_pred HhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE
Confidence 6667777777777777666777777788888888888875
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-27 Score=273.82 Aligned_cols=314 Identities=21% Similarity=0.228 Sum_probs=198.8
Q ss_pred CCeeEEEEEecccC-CCcccccCCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccc-cCCCcccCc
Q 035853 223 EDFKRISVCRTVTN-FDSWEHFDTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLD-EYPAGINPL 300 (581)
Q Consensus 223 ~~~r~lsl~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~-~lp~~i~~l 300 (581)
.+.|++.+. ++.. ..++....++|++|.+.++.... .. +..+..+++|++|++++|.+. .+|..++++
T Consensus 118 ~~L~~L~Ls-~n~l~~~~p~~~l~~L~~L~Ls~n~~~~------~~---p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 187 (968)
T PLN00113 118 SSLRYLNLS-NNNFTGSIPRGSIPNLETLDLSNNMLSG------EI---PNDIGSFSSLKVLDLGGNVLVGKIPNSLTNL 187 (968)
T ss_pred CCCCEEECc-CCccccccCccccCCCCEEECcCCcccc------cC---ChHHhcCCCCCEEECccCcccccCChhhhhC
Confidence 445555555 3222 11222225666666666655422 12 355667777777777777765 666677777
Q ss_pred CCCcEEeccCCCCc-ccChhhhcccCCcEEEecCCcc-cccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEece
Q 035853 301 LLLKYLVLNIPSLK-HLPSSLCNLLSLHTLDMRWSYI-HHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISV 378 (581)
Q Consensus 301 ~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~l-~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l 378 (581)
++|++|++++|.+. .+|..++++++|++|++++|.+ ..+|..++++++|++|++++|.+.+.+|..++++++|+.|++
T Consensus 188 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 267 (968)
T PLN00113 188 TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFL 267 (968)
T ss_pred cCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEEC
Confidence 77777777777765 5677777777777777777754 356777777777777777777776677777777777777777
Q ss_pred ecCC--CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc--cCC-CCCCCCCccEE
Q 035853 379 LHPS--SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI--VLP-EYQFPPRLIEL 453 (581)
Q Consensus 379 ~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l--~lp-~~~~l~~L~~L 453 (581)
..+. ...+..+.++++|+.|++++|. ....+|..+..+++|+.|+++++. + .+| ++..+++|+.|
T Consensus 268 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~--l~~~~p~~~~~l~~L~~L~l~~n~--------~~~~~~~~~~~l~~L~~L 337 (968)
T PLN00113 268 YQNKLSGPIPPSIFSLQKLISLDLSDNS--LSGEIPELVIQLQNLEILHLFSNN--------FTGKIPVALTSLPRLQVL 337 (968)
T ss_pred cCCeeeccCchhHhhccCcCEEECcCCe--eccCCChhHcCCCCCcEEECCCCc--------cCCcCChhHhcCCCCCEE
Confidence 7666 4566667777777777777765 555666667777777777776643 3 455 66667777777
Q ss_pred EEeeccCCCCCcccccCCCCCCeEEEecCcccCcee-----------------------eeCCCCCCCCcEEEecCCCcc
Q 035853 454 SLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKL-----------------------VCSSGGFPSLKVMHLKSMFWL 510 (581)
Q Consensus 454 ~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~-----------------------~~~~~~~~~L~~L~l~~~~~l 510 (581)
++++|.+.+..+..++.+++|+.|++++|.+.+... +..+..+++|+.|++.+|...
T Consensus 338 ~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~ 417 (968)
T PLN00113 338 QLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS 417 (968)
T ss_pred ECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEee
Confidence 777777666666666777777777777665543321 222334555555655555433
Q ss_pred cccccCcccccccceEeeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 511 EEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 511 ~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
..+|..+..+++|+.|++++|.....+|..+..+++|+.|++++|.
T Consensus 418 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 463 (968)
T PLN00113 418 GELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK 463 (968)
T ss_pred eECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCce
Confidence 3455555556666666666665555555555566666666666664
|
|
| >PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.8e-28 Score=238.42 Aligned_cols=154 Identities=27% Similarity=0.424 Sum_probs=117.4
Q ss_pred hHHHHHHHHHhcCceEEEEEEcCCChhHHHHHHhhCCCCCCCCEEEEeCCC--------------------hHHHHHhc-
Q 035853 2 EQRKTALHDYLRNKRYLIVFEDVISSDVWDYIGKALPDHQNGSRVLAMLTC--------------------SDEIFSLC- 60 (581)
Q Consensus 2 ~~l~~~l~~~L~~kr~LlVLDDv~~~~~~~~l~~~~~~~~~gs~iivTtr~--------------------~~~~~~Lf- 60 (581)
+++++.|++.|+++|+||||||||+..+|+.+...++.+..||+||||||+ .+||++||
T Consensus 88 ~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~ 167 (287)
T PF00931_consen 88 EELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFK 167 (287)
T ss_dssp HHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHH
T ss_pred ccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 467899999999999999999999999999999988888889999999998 19999999
Q ss_pred cc-ccCccccCCC-CChh-hHHhhcCCcchhhhhhccc-----c--ceecccc--cccc-------c--ccceeccccCc
Q 035853 61 RL-ENGEMIHLDS-VPAG-PLRAKYQERPLVFLYYGRN-----S--LVENMRL--TWRI-------Q--KWPLLFSIVEL 119 (581)
Q Consensus 61 ~~-f~~~~~~~~~-~~~~-~i~~~c~GlPLal~~~g~~-----t--~~~~~~~--~~~~-------~--~~~L~~sY~~L 119 (581)
+. +.......+. ++.+ +|+++|+|+|||++++|++ + .|+.... .+.. . ..++.+||+.|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L 247 (287)
T PF00931_consen 168 KRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSL 247 (287)
T ss_dssp HHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSS
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcC
Confidence 77 5544213344 8899 9999999999999999999 1 2222200 1111 1 77899999999
Q ss_pred hhhhHHHHhhhcccCCCceechHHHHHHHHhcCCCC
Q 035853 120 PQHLKLCCLYLSAFRDAFEIATKELYQLWIAEGFIP 155 (581)
Q Consensus 120 ~~~lk~cFl~~a~Fp~~~~i~~~~Li~~w~a~g~i~ 155 (581)
|+++|+||+|||+||+++.|+++.|+++|+|+|||+
T Consensus 248 ~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~ 283 (287)
T PF00931_consen 248 PDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFIS 283 (287)
T ss_dssp HTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC
T ss_pred CccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCc
Confidence 999999999999999999999999999999999996
|
This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A. |
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-28 Score=243.38 Aligned_cols=313 Identities=22% Similarity=0.210 Sum_probs=264.8
Q ss_pred CCCCeeEEEEEecccCCCccccc--CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCccc
Q 035853 221 SLEDFKRISVCRTVTNFDSWEHF--DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGIN 298 (581)
Q Consensus 221 ~~~~~r~lsl~~~~~~~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~ 298 (581)
...+..|+|+. .+....+.... .+.||++.+..+.... ... ++.+.++.-|.+|||++|++.+.|..+.
T Consensus 53 ~lqkLEHLs~~-HN~L~~vhGELs~Lp~LRsv~~R~N~LKn-----sGi---P~diF~l~dLt~lDLShNqL~EvP~~LE 123 (1255)
T KOG0444|consen 53 RLQKLEHLSMA-HNQLISVHGELSDLPRLRSVIVRDNNLKN-----SGI---PTDIFRLKDLTILDLSHNQLREVPTNLE 123 (1255)
T ss_pred HHhhhhhhhhh-hhhhHhhhhhhccchhhHHHhhhcccccc-----CCC---Cchhcccccceeeecchhhhhhcchhhh
Confidence 34567778877 44433355555 8899999998887654 233 5777889999999999999999999999
Q ss_pred CcCCCcEEeccCCCCcccChhh-hcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEec
Q 035853 299 PLLLLKYLVLNIPSLKHLPSSL-CNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFIS 377 (581)
Q Consensus 299 ~l~~Lr~L~L~~~~i~~lp~~i-~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 377 (581)
+-+++-+|+|++|+|..+|.++ -+|..|-.|||++|.+..+|..+.++..|+.|++++|.+...--..+..+++|++|.
T Consensus 124 ~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLh 203 (1255)
T KOG0444|consen 124 YAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLH 203 (1255)
T ss_pred hhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhh
Confidence 9999999999999999999654 588999999999999999999999999999999999987643334566788899999
Q ss_pred eecCC---CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC-CCCCCCCccE
Q 035853 378 VLHPS---SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP-EYQFPPRLIE 452 (581)
Q Consensus 378 l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp-~~~~l~~L~~ 452 (581)
+++.. ..+|.++..+.+|+.++++.+ ....+|+.+.++++|+.|+++++. + .+. ..+.-.+|++
T Consensus 204 ms~TqRTl~N~Ptsld~l~NL~dvDlS~N---~Lp~vPecly~l~~LrrLNLS~N~--------iteL~~~~~~W~~lEt 272 (1255)
T KOG0444|consen 204 MSNTQRTLDNIPTSLDDLHNLRDVDLSEN---NLPIVPECLYKLRNLRRLNLSGNK--------ITELNMTEGEWENLET 272 (1255)
T ss_pred cccccchhhcCCCchhhhhhhhhcccccc---CCCcchHHHhhhhhhheeccCcCc--------eeeeeccHHHHhhhhh
Confidence 88887 788999999999999999998 678899999999999999999865 5 444 4445568999
Q ss_pred EEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccCcccccccceEeeccCc
Q 035853 453 LSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCA 532 (581)
Q Consensus 453 L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 532 (581)
|+++.|.++ ..|..+.+++.|+.|.+.+|.+.-+.+|+.++.+-.|+.+...++ +++-.|..+..|++|+.|.++.|.
T Consensus 273 LNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~Nr 350 (1255)
T KOG0444|consen 273 LNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHNR 350 (1255)
T ss_pred hccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhcccccc
Confidence 999999864 577888999999999999888888888999999999999999887 788899999999999999998765
Q ss_pred CCCCCcccccCCCCccEEEeeCCC
Q 035853 533 YLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 533 ~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
+-.+|.++.-++.|+.|++.++|
T Consensus 351 -LiTLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 351 -LITLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred -eeechhhhhhcCCcceeeccCCc
Confidence 66799999999999999999998
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-25 Score=225.43 Aligned_cols=318 Identities=17% Similarity=0.164 Sum_probs=206.0
Q ss_pred CCCeeEEEEEecccCCCccccc--CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccc--cCCCcc
Q 035853 222 LEDFKRISVCRTVTNFDSWEHF--DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLD--EYPAGI 297 (581)
Q Consensus 222 ~~~~r~lsl~~~~~~~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~--~lp~~i 297 (581)
...++.+.+. ......+|+.. +.+|+.|.+..+... .. -..++.++.||.+++..|+++ .+|..|
T Consensus 31 Mt~~~WLkLn-rt~L~~vPeEL~~lqkLEHLs~~HN~L~-------~v---hGELs~Lp~LRsv~~R~N~LKnsGiP~di 99 (1255)
T KOG0444|consen 31 MTQMTWLKLN-RTKLEQVPEELSRLQKLEHLSMAHNQLI-------SV---HGELSDLPRLRSVIVRDNNLKNSGIPTDI 99 (1255)
T ss_pred hhheeEEEec-hhhhhhChHHHHHHhhhhhhhhhhhhhH-------hh---hhhhccchhhHHHhhhccccccCCCCchh
Confidence 3445555555 44444455555 666666666655542 12 345566667777777777665 667777
Q ss_pred cCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhh-hcCCCCcEeecCCcccCCCCCCccCCCCCCcEe
Q 035853 298 NPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEI-WKMNELRHLNFGSITLPAHPGKCCSSLENLNFI 376 (581)
Q Consensus 298 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 376 (581)
.++..|..|+|++|.+++.|..+..-+++-+|+|++|++..+|..+ -+++-|-.||+++|++. .+|+.+.++..||+|
T Consensus 100 F~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL 178 (1255)
T KOG0444|consen 100 FRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTL 178 (1255)
T ss_pred cccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhh
Confidence 7777777777777777777777777777777777777777777654 46666777777777665 566677777777777
Q ss_pred ceecCC--CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC-CCCCCCCccE
Q 035853 377 SVLHPS--SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP-EYQFPPRLIE 452 (581)
Q Consensus 377 ~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp-~~~~l~~L~~ 452 (581)
.++++. ..-...+..+++|+.|.+++.. .....+|.++..+.||..++++.++ + .+| .+-.+++|+.
T Consensus 179 ~Ls~NPL~hfQLrQLPsmtsL~vLhms~Tq-RTl~N~Ptsld~l~NL~dvDlS~N~--------Lp~vPecly~l~~Lrr 249 (1255)
T KOG0444|consen 179 KLSNNPLNHFQLRQLPSMTSLSVLHMSNTQ-RTLDNIPTSLDDLHNLRDVDLSENN--------LPIVPECLYKLRNLRR 249 (1255)
T ss_pred hcCCChhhHHHHhcCccchhhhhhhccccc-chhhcCCCchhhhhhhhhccccccC--------CCcchHHHhhhhhhhe
Confidence 777665 3333445556666666666654 3445566677777777777777654 5 666 6667777777
Q ss_pred EEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCC-cccccccCcccccccceEeeccC
Q 035853 453 LSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMF-WLEEWTMENDAMPKLESLIINPC 531 (581)
Q Consensus 453 L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~l~~l~~~~~~l~~L~~L~l~~c 531 (581)
|+|++|.++. .....+...+|++|+++.|.++. +|.....+++|+.|.+.++. ..+.+|..++.+..|+.+...+|
T Consensus 250 LNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt~--LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN 326 (1255)
T KOG0444|consen 250 LNLSGNKITE-LNMTEGEWENLETLNLSRNQLTV--LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN 326 (1255)
T ss_pred eccCcCceee-eeccHHHHhhhhhhccccchhcc--chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc
Confidence 7777776543 22244556677777777666643 24455667777777777653 23467777888888888877765
Q ss_pred cCCCCCcccccCCCCccEEEeeCCC-HHHHHHHh
Q 035853 532 AYLKILPEELWRIKSLTKLELWWPR-FELRETLR 564 (581)
Q Consensus 532 ~~l~~lp~~l~~l~~L~~L~l~~c~-~~~~~~~~ 564 (581)
+++-+|.++.+|..|+.|.++.+. ..+.+.+.
T Consensus 327 -~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIH 359 (1255)
T KOG0444|consen 327 -KLELVPEGLCRCVKLQKLKLDHNRLITLPEAIH 359 (1255)
T ss_pred -ccccCchhhhhhHHHHHhcccccceeechhhhh
Confidence 477788888888888888887765 23334443
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-23 Score=207.32 Aligned_cols=313 Identities=20% Similarity=0.188 Sum_probs=208.4
Q ss_pred CCCeeEEEEEecccCCCccccc--CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCC-Cccc
Q 035853 222 LEDFKRISVCRTVTNFDSWEHF--DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYP-AGIN 298 (581)
Q Consensus 222 ~~~~r~lsl~~~~~~~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~ 298 (581)
..+...+.+. .+....+|.-. ..+++.|.+.++...+ .- ...++.++.||+|||+.|.++.+| .++.
T Consensus 101 l~nLq~v~l~-~N~Lt~IP~f~~~sghl~~L~L~~N~I~s------v~---se~L~~l~alrslDLSrN~is~i~~~sfp 170 (873)
T KOG4194|consen 101 LPNLQEVNLN-KNELTRIPRFGHESGHLEKLDLRHNLISS------VT---SEELSALPALRSLDLSRNLISEIPKPSFP 170 (873)
T ss_pred CCcceeeeec-cchhhhcccccccccceeEEeeecccccc------cc---HHHHHhHhhhhhhhhhhchhhcccCCCCC
Confidence 3445556666 44444455544 6778888888887754 22 577788889999999999988666 3466
Q ss_pred CcCCCcEEeccCCCCcccC-hhhhcccCCcEEEecCCcccccchhh-hcCCCCcEeecCCcccCCCCCCccCCCCCCcEe
Q 035853 299 PLLLLKYLVLNIPSLKHLP-SSLCNLLSLHTLDMRWSYIHHTPDEI-WKMNELRHLNFGSITLPAHPGKCCSSLENLNFI 376 (581)
Q Consensus 299 ~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 376 (581)
.-.++++|+|++|+|+.+- ..+..+.+|.+|.|+.|.+..+|... .+|++|+.|++..|.+.-.---.|..|.+|+.|
T Consensus 171 ~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nl 250 (873)
T KOG4194|consen 171 AKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNL 250 (873)
T ss_pred CCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhh
Confidence 6678999999999988554 46778889999999999999998655 459999999999888742212346778888888
Q ss_pred ceecCC-Ccch-hhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC--CCCCCCCcc
Q 035853 377 SVLHPS-SCTQ-DILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP--EYQFPPRLI 451 (581)
Q Consensus 377 ~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp--~~~~l~~L~ 451 (581)
.+..+. ..+- ..+-.|.+++.|++..+. ....-..++.+++.|+.|+++.+. + ++- ....+++|+
T Consensus 251 klqrN~I~kL~DG~Fy~l~kme~l~L~~N~--l~~vn~g~lfgLt~L~~L~lS~Na--------I~rih~d~WsftqkL~ 320 (873)
T KOG4194|consen 251 KLQRNDISKLDDGAFYGLEKMEHLNLETNR--LQAVNEGWLFGLTSLEQLDLSYNA--------IQRIHIDSWSFTQKLK 320 (873)
T ss_pred hhhhcCcccccCcceeeecccceeecccch--hhhhhcccccccchhhhhccchhh--------hheeecchhhhcccce
Confidence 888777 2222 235567788888888875 444445667778888888888754 4 332 455677788
Q ss_pred EEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCccccc---ccCcccccccceEee
Q 035853 452 ELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEW---TMENDAMPKLESLII 528 (581)
Q Consensus 452 ~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l---~~~~~~l~~L~~L~l 528 (581)
.|+|++|.++.-....+..+..|++|.|+.|++.... ...+.++++|+.|+|+++..--.+ ...+..+|+|+.|.+
T Consensus 321 ~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~-e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l 399 (873)
T KOG4194|consen 321 ELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLA-EGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRL 399 (873)
T ss_pred eEeccccccccCChhHHHHHHHhhhhcccccchHHHH-hhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheee
Confidence 8888777777666666767777777777766553221 223445566666666654211111 122344666666666
Q ss_pred ccCcCCCCCcc-cccCCCCccEEEeeCCC
Q 035853 529 NPCAYLKILPE-ELWRIKSLTKLELWWPR 556 (581)
Q Consensus 529 ~~c~~l~~lp~-~l~~l~~L~~L~l~~c~ 556 (581)
.||. ++++|. .+..+++|++|++.+|+
T Consensus 400 ~gNq-lk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 400 TGNQ-LKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred cCce-eeecchhhhccCcccceecCCCCc
Confidence 6653 555553 45556666666666554
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.6e-21 Score=222.32 Aligned_cols=294 Identities=17% Similarity=0.159 Sum_probs=207.1
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcc------cc-cCCCcccCcC-CCcEEeccCCCCcc
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIV------LD-EYPAGINPLL-LLKYLVLNIPSLKH 315 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~------l~-~lp~~i~~l~-~Lr~L~L~~~~i~~ 315 (581)
..+++.+.+........ ... ...|..|++|+.|.+..+. +. .+|..+..++ +||+|++.++.++.
T Consensus 531 ~~~v~~i~l~~~~~~~~----~i~---~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~ 603 (1153)
T PLN03210 531 TKKVLGITLDIDEIDEL----HIH---ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRC 603 (1153)
T ss_pred cceeeEEEeccCcccee----eec---HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCC
Confidence 45666666554333221 122 5789999999999997653 22 5777777765 69999999999999
Q ss_pred cChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC--CcchhhhCCCC
Q 035853 316 LPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS--SCTQDILGRLP 393 (581)
Q Consensus 316 lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~ 393 (581)
+|..+ .+.+|+.|++.++.+..+|.++..+++|+.|+++++.....+| .++.+++|++|++.+|. ..+|..+++++
T Consensus 604 lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~ 681 (1153)
T PLN03210 604 MPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLN 681 (1153)
T ss_pred CCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccC
Confidence 99887 5799999999999999999999999999999999987666777 58899999999999987 78889999999
Q ss_pred CCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcc--------cCC-----cccc-cCC-CCCCC-----------
Q 035853 394 SLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTI--------ALQ-----PSSI-VLP-EYQFP----------- 447 (581)
Q Consensus 394 ~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i--------~L~-----~l~l-~lp-~~~~l----------- 447 (581)
+|+.|++++|. ....+|..+ ++++|+.|+++++..+ +|+ ...+ .+| .+ .+
T Consensus 682 ~L~~L~L~~c~--~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~ 757 (1153)
T PLN03210 682 KLEDLDMSRCE--NLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL-RLENLDELILCEM 757 (1153)
T ss_pred CCCEEeCCCCC--CcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccc-ccccccccccccc
Confidence 99999999997 677777765 6888999998875321 122 2223 444 22 22
Q ss_pred --------------------CCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCC
Q 035853 448 --------------------PRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSM 507 (581)
Q Consensus 448 --------------------~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 507 (581)
++|+.|++++|......|..++++++|+.|++++|...... |... .+++|+.|++++|
T Consensus 758 ~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L-P~~~-~L~sL~~L~Ls~c 835 (1153)
T PLN03210 758 KSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL-PTGI-NLESLESLDLSGC 835 (1153)
T ss_pred chhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee-CCCC-CccccCEEECCCC
Confidence 34555555555444444555555566666666554332222 2211 4555666666665
Q ss_pred CcccccccCcccccccceEeeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 508 FWLEEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 508 ~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
..+..+|.. .++|+.|++++|. +..+|..+..+++|+.|++++|+
T Consensus 836 ~~L~~~p~~---~~nL~~L~Ls~n~-i~~iP~si~~l~~L~~L~L~~C~ 880 (1153)
T PLN03210 836 SRLRTFPDI---STNISDLNLSRTG-IEEVPWWIEKFSNLSFLDMNGCN 880 (1153)
T ss_pred Ccccccccc---ccccCEeECCCCC-CccChHHHhcCCCCCEEECCCCC
Confidence 555544432 3456666666553 45677788889999999999987
|
syringae 6; Provisional |
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.4e-22 Score=199.23 Aligned_cols=321 Identities=18% Similarity=0.161 Sum_probs=255.9
Q ss_pred CCCCeeEEEEEecccC-CCccccc--CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCC-Cc
Q 035853 221 SLEDFKRISVCRTVTN-FDSWEHF--DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYP-AG 296 (581)
Q Consensus 221 ~~~~~r~lsl~~~~~~-~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~ 296 (581)
....+.++.+. .+.+ ..-.+.. .+-+|+|.++.+.... .. .+.|.+-.+++.|+|++|.++.+- ..
T Consensus 123 ~sghl~~L~L~-~N~I~sv~se~L~~l~alrslDLSrN~is~------i~---~~sfp~~~ni~~L~La~N~It~l~~~~ 192 (873)
T KOG4194|consen 123 ESGHLEKLDLR-HNLISSVTSEELSALPALRSLDLSRNLISE------IP---KPSFPAKVNIKKLNLASNRITTLETGH 192 (873)
T ss_pred cccceeEEeee-ccccccccHHHHHhHhhhhhhhhhhchhhc------cc---CCCCCCCCCceEEeecccccccccccc
Confidence 45668889998 5444 3333444 8999999999988754 33 677888889999999999998554 56
Q ss_pred ccCcCCCcEEeccCCCCcccCh-hhhcccCCcEEEecCCccccc-chhhhcCCCCcEeecCCcccCCCCCCccCCCCCCc
Q 035853 297 INPLLLLKYLVLNIPSLKHLPS-SLCNLLSLHTLDMRWSYIHHT-PDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLN 374 (581)
Q Consensus 297 i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~ 374 (581)
|..+.+|..|.|+.|+++.+|. .+.+|++|+.|+|..|.++.+ ...+..|++|+.|.+..|.+...-...|..+.+++
T Consensus 193 F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme 272 (873)
T KOG4194|consen 193 FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKME 272 (873)
T ss_pred ccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccc
Confidence 8888999999999999999995 566699999999999987766 45578899999999999988744444578899999
Q ss_pred EeceecCC--CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC--CCCCCCC
Q 035853 375 FISVLHPS--SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP--EYQFPPR 449 (581)
Q Consensus 375 ~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp--~~~~l~~ 449 (581)
+|++..+. .-.-..+.+++.|+.|+++.+. ....-+.....+++|+.|+++.+. + ++| .+..+..
T Consensus 273 ~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na--I~rih~d~WsftqkL~~LdLs~N~--------i~~l~~~sf~~L~~ 342 (873)
T KOG4194|consen 273 HLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA--IQRIHIDSWSFTQKLKELDLSSNR--------ITRLDEGSFRVLSQ 342 (873)
T ss_pred eeecccchhhhhhcccccccchhhhhccchhh--hheeecchhhhcccceeEeccccc--------cccCChhHHHHHHH
Confidence 99999888 3334457789999999999997 666667778888999999999866 7 887 7888999
Q ss_pred ccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCce--eeeCCCCCCCCcEEEecCCCccccccc-CcccccccceE
Q 035853 450 LIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRK--LVCSSGGFPSLKVMHLKSMFWLEEWTM-ENDAMPKLESL 526 (581)
Q Consensus 450 L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L 526 (581)
|+.|.|+.|.+..-.-..+..+.+|+.|+|+.|.+...+ -...+.++++|+.|.+.++ +++.+|. .+..+++|+.|
T Consensus 343 Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~L 421 (873)
T KOG4194|consen 343 LEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHL 421 (873)
T ss_pred hhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecchhhhccCccccee
Confidence 999999999875544456778999999999988764322 1234667999999999998 7888875 47889999999
Q ss_pred eeccCcCCCCCcccccCCCCccEEEe------eCCCHHHHHHH
Q 035853 527 IINPCAYLKILPEELWRIKSLTKLEL------WWPRFELRETL 563 (581)
Q Consensus 527 ~l~~c~~l~~lp~~l~~l~~L~~L~l------~~c~~~~~~~~ 563 (581)
++.+|+.-.--|..+..+ .|++|.+ .+|.-.|...+
T Consensus 422 dL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qW 463 (873)
T KOG4194|consen 422 DLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQW 463 (873)
T ss_pred cCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHHHHH
Confidence 999999655456677777 8888865 46775565443
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-22 Score=194.47 Aligned_cols=259 Identities=21% Similarity=0.205 Sum_probs=178.4
Q ss_pred eeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCccc
Q 035853 280 LRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITL 359 (581)
Q Consensus 280 Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~ 359 (581)
|..|++++|.+..+-..+.++..|.+|++++|.+.++|++++.+..++.|+.+++++.++|..++.+.+|++++.++|.+
T Consensus 47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~ 126 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNEL 126 (565)
T ss_pred hhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccce
Confidence 45556666666555555666666666666666666666666666666666666666666666666666666666666665
Q ss_pred CCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCccc
Q 035853 360 PAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSS 438 (581)
Q Consensus 360 ~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~ 438 (581)
. .+|++++.+..|+.++..++. ...|..++++.+|..+.+.++ ...++|+..-.++.|++|+...+.
T Consensus 127 ~-el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n---~l~~l~~~~i~m~~L~~ld~~~N~-------- 194 (565)
T KOG0472|consen 127 K-ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGN---KLKALPENHIAMKRLKHLDCNSNL-------- 194 (565)
T ss_pred e-ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhcccc---chhhCCHHHHHHHHHHhcccchhh--------
Confidence 4 555666666666666655555 556666666666666666666 334444444446666666665533
Q ss_pred c-cCC-CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccC
Q 035853 439 I-VLP-EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTME 516 (581)
Q Consensus 439 l-~lp-~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~ 516 (581)
+ .+| .++.+.+|..|++..|++. ..+.|++|..|++|+++.|.+..-. ......+++|..|++.++ ++++.|.+
T Consensus 195 L~tlP~~lg~l~~L~~LyL~~Nki~--~lPef~gcs~L~Elh~g~N~i~~lp-ae~~~~L~~l~vLDLRdN-klke~Pde 270 (565)
T KOG0472|consen 195 LETLPPELGGLESLELLYLRRNKIR--FLPEFPGCSLLKELHVGENQIEMLP-AEHLKHLNSLLVLDLRDN-KLKEVPDE 270 (565)
T ss_pred hhcCChhhcchhhhHHHHhhhcccc--cCCCCCccHHHHHHHhcccHHHhhH-HHHhcccccceeeecccc-ccccCchH
Confidence 4 677 7777777888888877653 3447888888888888866553221 223457889999999987 78999999
Q ss_pred cccccccceEeeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 517 NDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 517 ~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
+.-+.+|++|++++|. +.++|..++++ .|+.|.+.|+|
T Consensus 271 ~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 271 ICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred HHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCc
Confidence 9999999999999876 67889899999 99999999999
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.4e-22 Score=188.75 Aligned_cols=246 Identities=22% Similarity=0.241 Sum_probs=152.2
Q ss_pred HHHhccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCc
Q 035853 271 NAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELR 350 (581)
Q Consensus 271 ~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~ 350 (581)
.+.+.++..|.+|++.++++..+|..++.+..++.|+.++|++..+|+.++.+.+|..|+.+++.+.++|++++.+-.|.
T Consensus 61 ~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~ 140 (565)
T KOG0472|consen 61 REDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLE 140 (565)
T ss_pred cHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhh
Confidence 45566666677777777766666666776666667777776666677666666677777666666666666666666666
Q ss_pred EeecCCcccCCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecC
Q 035853 351 HLNFGSITLPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDE 429 (581)
Q Consensus 351 ~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~ 429 (581)
.++.++|.+. ..|.+++++.+|..+.+.++. ...++..-+++.|++|+...+ ..+.+|..++.+.+|+.|++..+
T Consensus 141 dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N---~L~tlP~~lg~l~~L~~LyL~~N 216 (565)
T KOG0472|consen 141 DLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN---LLETLPPELGGLESLELLYLRRN 216 (565)
T ss_pred hhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh---hhhcCChhhcchhhhHHHHhhhc
Confidence 6666666665 566666666666666666665 445544444666666666555 56666666666666666666654
Q ss_pred CcccCCcccc-cCCCCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCC
Q 035853 430 RTIALQPSSI-VLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMF 508 (581)
Q Consensus 430 ~~i~L~~l~l-~lp~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 508 (581)
. + .+|.|..|+.|++|.+..|.+.--......+++++.+|++.+|.+... |....-+.+|+.|+++++
T Consensus 217 k--------i~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~--Pde~clLrsL~rLDlSNN- 285 (565)
T KOG0472|consen 217 K--------IRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEV--PDEICLLRSLERLDLSNN- 285 (565)
T ss_pred c--------cccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccC--chHHHHhhhhhhhcccCC-
Confidence 4 4 555555666666666666654322222233566666666665555322 333344556666666665
Q ss_pred cccccccCcccccccceEeeccCc
Q 035853 509 WLEEWTMENDAMPKLESLIINPCA 532 (581)
Q Consensus 509 ~l~~l~~~~~~l~~L~~L~l~~c~ 532 (581)
.+..+|.+.+++ .|+.|.+.|||
T Consensus 286 ~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 286 DISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred ccccCCcccccc-eeeehhhcCCc
Confidence 456666666666 66666666665
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.8e-20 Score=195.12 Aligned_cols=297 Identities=22% Similarity=0.245 Sum_probs=172.5
Q ss_pred cccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccC
Q 035853 246 YLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLS 325 (581)
Q Consensus 246 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~ 325 (581)
+|++|.+.++.... . +..+..+.+|+.|.++.|.+.++|.++.++.+|++|+|.+|.+..+|.++..+++
T Consensus 46 ~L~~l~lsnn~~~~-------f---p~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lkn 115 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISS-------F---PIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKN 115 (1081)
T ss_pred eeEEeecccccccc-------C---CchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhc
Confidence 47777777776643 1 4556667777777777777777777777777888888887777777877777888
Q ss_pred CcEEEecCCcccccchhhhcCCCCcEeecCCc-------------------ccCCCCCCccCC-----------------
Q 035853 326 LHTLDMRWSYIHHTPDEIWKMNELRHLNFGSI-------------------TLPAHPGKCCSS----------------- 369 (581)
Q Consensus 326 L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~-------------------~~~~~~p~~i~~----------------- 369 (581)
|+.|++++|.+..+|.-+..+..+..++.++| .+.+.++..++.
T Consensus 116 l~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dl 195 (1081)
T KOG0618|consen 116 LQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDL 195 (1081)
T ss_pred ccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhh
Confidence 88888777766665544333333333322222 111111111110
Q ss_pred --------------------------------------------CCCCcEeceecCC-CcchhhhCCCCCCCeEEEeeec
Q 035853 370 --------------------------------------------LENLNFISVLHPS-SCTQDILGRLPSLQTFRVHENL 404 (581)
Q Consensus 370 --------------------------------------------l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~ 404 (581)
-.+|+.++++.+. ..+|+.++.+.+|+.+.+..+.
T Consensus 196 s~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~ 275 (1081)
T KOG0618|consen 196 SNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNR 275 (1081)
T ss_pred hhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchh
Confidence 0233344444333 4455666777788888877774
Q ss_pred c--------------------cchhchhhhcCCCCCCCEEEeecCC--cc----------cCCccc-----c-cCCC--C
Q 035853 405 S--------------------SYQSMLSNNLCPLLHLESLKLVDER--TI----------ALQPSS-----I-VLPE--Y 444 (581)
Q Consensus 405 ~--------------------~~~~~l~~~l~~~~~L~~L~l~~~~--~i----------~L~~l~-----l-~lp~--~ 444 (581)
- ...+.+|..+...++|++|++..+. .+ .++.+. + .+|. =
T Consensus 276 l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e 355 (1081)
T KOG0618|consen 276 LVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEE 355 (1081)
T ss_pred HHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccc
Confidence 0 0122334445556667777776522 00 111111 1 2231 1
Q ss_pred CCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccCc-------
Q 035853 445 QFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMEN------- 517 (581)
Q Consensus 445 ~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~------- 517 (581)
...+.|+.|.+.+|.++....+.+.++++|+.|+|++|.+..-. ......++.|+.|+|++| .++.+|...
T Consensus 356 ~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fp-as~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~ 433 (1081)
T KOG0618|consen 356 NNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFP-ASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLH 433 (1081)
T ss_pred hhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCC-HHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhH
Confidence 23567777888888888888888888888888888877654222 233556777777788776 566665444
Q ss_pred ---------------ccccccceEeeccCcCCC--CCcccccCCCCccEEEeeCCC
Q 035853 518 ---------------DAMPKLESLIINPCAYLK--ILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 518 ---------------~~l~~L~~L~l~~c~~l~--~lp~~l~~l~~L~~L~l~~c~ 556 (581)
..+|.|+.++++.|. ++ .+|..... ++|++|+++||+
T Consensus 434 tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~-L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 434 TLRAHSNQLLSFPELAQLPQLKVLDLSCNN-LSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred HHhhcCCceeechhhhhcCcceEEecccch-hhhhhhhhhCCC-cccceeeccCCc
Confidence 345566666666443 32 22222211 567777777766
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-18 Score=182.91 Aligned_cols=217 Identities=24% Similarity=0.261 Sum_probs=115.0
Q ss_pred CCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEEEeee
Q 035853 325 SLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFRVHEN 403 (581)
Q Consensus 325 ~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~ 403 (581)
+|++++++++.+..+|+.++.+.+|+.++..+|.+. .+|..+...++|+.|.+..+. ..++..+..++.|+.|++..+
T Consensus 242 nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred cceeeecchhhhhcchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhc
Confidence 344444444444455555555555555555555543 444444444455555544444 455555556666666666665
Q ss_pred cc-c----------------------------------------------chhchhhhcCCCCCCCEEEeecCCcccCCc
Q 035853 404 LS-S----------------------------------------------YQSMLSNNLCPLLHLESLKLVDERTIALQP 436 (581)
Q Consensus 404 ~~-~----------------------------------------------~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~ 436 (581)
.- . ..+..-..+.++.+|+.|+++++.
T Consensus 321 ~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr------ 394 (1081)
T KOG0618|consen 321 NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR------ 394 (1081)
T ss_pred cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc------
Confidence 30 0 111112223333444444444433
Q ss_pred ccc-cCC--CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCccccc
Q 035853 437 SSI-VLP--EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEW 513 (581)
Q Consensus 437 l~l-~lp--~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 513 (581)
+ .+| .+.+++.|+.|.|++|+++ ..+..+..++.|++|...+|.+. .+| .+..++.|+.++++.| ++..+
T Consensus 395 --L~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~--~fP-e~~~l~qL~~lDlS~N-~L~~~ 467 (1081)
T KOG0618|consen 395 --LNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL--SFP-ELAQLPQLKVLDLSCN-NLSEV 467 (1081)
T ss_pred --cccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee--ech-hhhhcCcceEEecccc-hhhhh
Confidence 4 455 3455555555555555543 33345555555555555544432 223 5667899999999987 56654
Q ss_pred ccCcc-cccccceEeeccCcCCCCCcccccCCCCccEEEeeCC
Q 035853 514 TMEND-AMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWP 555 (581)
Q Consensus 514 ~~~~~-~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 555 (581)
..... .-|+|++|+++||..+..--..+..+.++...++.-.
T Consensus 468 ~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 468 TLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 33222 2289999999999875433334444555555555433
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-16 Score=173.67 Aligned_cols=242 Identities=21% Similarity=0.249 Sum_probs=179.0
Q ss_pred CceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCc
Q 035853 278 KFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSI 357 (581)
Q Consensus 278 ~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~ 357 (581)
.+..+|+++++.++.+|..+. ++|+.|++++|.++.+|..+. .+|++|++++|.+..+|..+. .+|+.|++++|
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCC
Confidence 356788888888888887665 478899999998888887764 589999999888888887654 47889999988
Q ss_pred ccCCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCc
Q 035853 358 TLPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQP 436 (581)
Q Consensus 358 ~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~ 436 (581)
.+. .+|..+. ++|+.|+++++. ..+|..+. ++|+.|++++|. ...+|..+. ++|+.|+++++.
T Consensus 252 ~L~-~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~---Lt~LP~~lp--~sL~~L~Ls~N~------ 315 (754)
T PRK15370 252 RIT-ELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS---IRTLPAHLP--SGITHLNVQSNS------ 315 (754)
T ss_pred ccC-cCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc---cccCcccch--hhHHHHHhcCCc------
Confidence 876 6776654 478888888777 55565553 578999998884 334554432 467788888755
Q ss_pred ccc-cCC-CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccc
Q 035853 437 SSI-VLP-EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWT 514 (581)
Q Consensus 437 l~l-~lp-~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 514 (581)
+ .+| .+ .++|+.|++++|.++. .+..+ .++|+.|++++|.+.. ++.. ..++|+.|++++| .+..+|
T Consensus 316 --Lt~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~~--LP~~--lp~~L~~LdLs~N-~Lt~LP 383 (754)
T PRK15370 316 --LTALPETL--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQITV--LPET--LPPTITTLDVSRN-ALTNLP 383 (754)
T ss_pred --cccCCccc--cccceeccccCCcccc-CChhh--cCcccEEECCCCCCCc--CChh--hcCCcCEEECCCC-cCCCCC
Confidence 5 666 43 3689999999998764 33333 3789999999887753 2222 2468999999998 577787
Q ss_pred cCcccccccceEeeccCcCCCCCcccc----cCCCCccEEEeeCCC
Q 035853 515 MENDAMPKLESLIINPCAYLKILPEEL----WRIKSLTKLELWWPR 556 (581)
Q Consensus 515 ~~~~~l~~L~~L~l~~c~~l~~lp~~l----~~l~~L~~L~l~~c~ 556 (581)
..+. ++|+.|++++|. +..+|..+ ..++++..|.+.+||
T Consensus 384 ~~l~--~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 384 ENLP--AALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HhHH--HHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCC
Confidence 6543 479999999986 55676644 345888999999998
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-15 Score=163.99 Aligned_cols=232 Identities=22% Similarity=0.132 Sum_probs=160.7
Q ss_pred ceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcc
Q 035853 279 FLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSIT 358 (581)
Q Consensus 279 ~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~ 358 (581)
+|+.|++.+|+++.+|.. .++|++|++++|.++.+|.. .++|+.|++++|.+..+|.. ..+|+.|++++|.
T Consensus 223 ~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~ 293 (788)
T PRK15387 223 HITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPAL---PSGLCKLWIFGNQ 293 (788)
T ss_pred CCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhc---hhhcCEEECcCCc
Confidence 677777777777777643 46778888888777777743 35677777877777776652 3467778888877
Q ss_pred cCCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcc
Q 035853 359 LPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPS 437 (581)
Q Consensus 359 ~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l 437 (581)
+. .+|.. .++|+.|+++++. ..++.. ..+|+.|++++|. ...+|.. ..+|+.|+++++.
T Consensus 294 Lt-~LP~~---p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~---L~~LP~l---p~~Lq~LdLS~N~------- 353 (788)
T PRK15387 294 LT-SLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQ---LTSLPTL---PSGLQELSVSDNQ------- 353 (788)
T ss_pred cc-ccccc---ccccceeECCCCccccCCCC---cccccccccccCc---ccccccc---ccccceEecCCCc-------
Confidence 65 45542 3578888887776 433331 2356677777764 3334431 2478888888765
Q ss_pred cc-cCCCCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccC
Q 035853 438 SI-VLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTME 516 (581)
Q Consensus 438 ~l-~lp~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~ 516 (581)
+ .+|.+ .++|+.|++++|.+.. .+. ..++|+.|++++|.+... +. ..++|+.|++++| .+..+|..
T Consensus 354 -Ls~LP~l--p~~L~~L~Ls~N~L~~-LP~---l~~~L~~LdLs~N~Lt~L--P~---l~s~L~~LdLS~N-~LssIP~l 420 (788)
T PRK15387 354 -LASLPTL--PSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSL--PV---LPSELKELMVSGN-RLTSLPML 420 (788)
T ss_pred -cCCCCCC--Ccccceehhhcccccc-Ccc---cccccceEEecCCcccCC--CC---cccCCCEEEccCC-cCCCCCcc
Confidence 6 66621 3567888888887653 332 235789999998877642 22 2468999999998 47777753
Q ss_pred cccccccceEeeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 517 NDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 517 ~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
..+|+.|++++|. ++.+|..+.++++|+.|++++|+
T Consensus 421 ---~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 421 ---PSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred ---hhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCC
Confidence 3578889999876 66899989999999999999997
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-15 Score=164.37 Aligned_cols=259 Identities=16% Similarity=0.058 Sum_probs=191.6
Q ss_pred EEEEEecccCCCcccccCCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccCcCCCcEE
Q 035853 227 RISVCRTVTNFDSWEHFDTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYL 306 (581)
Q Consensus 227 ~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L 306 (581)
.+.+. ......+|..+.++++.|.+.++.... . + ..+++|++|++++|.++.+|.. .++|+.|
T Consensus 205 ~LdLs-~~~LtsLP~~l~~~L~~L~L~~N~Lt~------L----P---~lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L 267 (788)
T PRK15387 205 VLNVG-ESGLTTLPDCLPAHITTLVIPDNNLTS------L----P---ALPPELRTLEVSGNQLTSLPVL---PPGLLEL 267 (788)
T ss_pred EEEcC-CCCCCcCCcchhcCCCEEEccCCcCCC------C----C---CCCCCCcEEEecCCccCcccCc---cccccee
Confidence 45555 444444666556689999998877643 1 1 2357899999999999988854 3688999
Q ss_pred eccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC-Ccc
Q 035853 307 VLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS-SCT 385 (581)
Q Consensus 307 ~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~ 385 (581)
++++|.+..+|.. ..+|+.|++++|.+..+|.. .++|+.|++++|.+. .+|... .+|+.|++.+|. ..+
T Consensus 268 ~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~-~Lp~lp---~~L~~L~Ls~N~L~~L 337 (788)
T PRK15387 268 SIFSNPLTHLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLA-SLPALP---SELCKLWAYNNQLTSL 337 (788)
T ss_pred eccCCchhhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCCccc-cCCCCc---ccccccccccCccccc
Confidence 9999999988864 36788999999999999873 578999999999887 455432 357778888776 444
Q ss_pred hhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCCCCCCCCCccEEEEeeccCCCCC
Q 035853 386 QDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLPEYQFPPRLIELSLSNTELKYDP 464 (581)
Q Consensus 386 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp~~~~l~~L~~L~L~~~~l~~~~ 464 (581)
|. + ..+|+.|++++|. ...+|.. ..+|+.|+++++. + .+|.+ .++|+.|++++|.++. .
T Consensus 338 P~-l--p~~Lq~LdLS~N~---Ls~LP~l---p~~L~~L~Ls~N~--------L~~LP~l--~~~L~~LdLs~N~Lt~-L 397 (788)
T PRK15387 338 PT-L--PSGLQELSVSDNQ---LASLPTL---PSELYKLWAYNNR--------LTSLPAL--PSGLKELIVSGNRLTS-L 397 (788)
T ss_pred cc-c--ccccceEecCCCc---cCCCCCC---Ccccceehhhccc--------cccCccc--ccccceEEecCCcccC-C
Confidence 43 1 2479999999984 3445543 3567888888755 6 67721 3579999999998764 3
Q ss_pred cccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccCcccccccceEeeccCcCCCCCcccc
Q 035853 465 MPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEEL 541 (581)
Q Consensus 465 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l 541 (581)
+. ..++|+.|++++|.+... |. .+.+|+.|++++| .++.+|..+..+++|+.|++++|+.....|..+
T Consensus 398 P~---l~s~L~~LdLS~N~LssI--P~---l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 398 PV---LPSELKELMVSGNRLTSL--PM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CC---cccCCCEEEccCCcCCCC--Cc---chhhhhhhhhccC-cccccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 22 236899999999887642 32 2457899999997 688999999999999999999999776666544
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.9e-18 Score=143.26 Aligned_cols=128 Identities=20% Similarity=0.215 Sum_probs=71.7
Q ss_pred cCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecC
Q 035853 276 WFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFG 355 (581)
Q Consensus 276 ~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 355 (581)
.+.+...|.|++++++.+|..|..+.+|+.|++.+|.++++|.+++.++.|+.|++.-+.+..+|.+++.++.|+.||++
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLT 110 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcc
Confidence 44445555555555555555555566666666666556666655666666666665555555556556556666666655
Q ss_pred CcccC-CCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEEEeee
Q 035853 356 SITLP-AHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFRVHEN 403 (581)
Q Consensus 356 ~~~~~-~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~ 403 (581)
+|.+. ..+|..|-.++.|+.|++..++ ..+|.+++++++|+.|.+..+
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn 160 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN 160 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC
Confidence 55543 2444445455555555555555 555555555555555555544
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2e-15 Score=164.53 Aligned_cols=241 Identities=20% Similarity=0.223 Sum_probs=128.6
Q ss_pred eeEEEEEecccCCCcccccCCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccCcCCCc
Q 035853 225 FKRISVCRTVTNFDSWEHFDTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLK 304 (581)
Q Consensus 225 ~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr 304 (581)
...+.+. +.....++..+.++++.|.+.++.... . +..+ +.+|++|++++|.++.+|..+. .+|+
T Consensus 180 ~~~L~L~-~~~LtsLP~~Ip~~L~~L~Ls~N~Lts------L----P~~l--~~nL~~L~Ls~N~LtsLP~~l~--~~L~ 244 (754)
T PRK15370 180 KTELRLK-ILGLTTIPACIPEQITTLILDNNELKS------L----PENL--QGNIKTLYANSNQLTSIPATLP--DTIQ 244 (754)
T ss_pred ceEEEeC-CCCcCcCCcccccCCcEEEecCCCCCc------C----Chhh--ccCCCEEECCCCccccCChhhh--cccc
Confidence 3445554 333333444445567777776665532 1 1211 2467777777777776665543 3677
Q ss_pred EEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC-C
Q 035853 305 YLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS-S 383 (581)
Q Consensus 305 ~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~ 383 (581)
.|++++|.+..+|..+. .+|+.|++++|.+..+|..+. ++|++|++++|.+. .+|..+. ++|+.|+++++. .
T Consensus 245 ~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 245 EMELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT 317 (754)
T ss_pred EEECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccc
Confidence 77777777777776553 467777777776666766543 46777777777665 3454332 356666666665 3
Q ss_pred cchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC-CCCCCCCccEEEEeeccCC
Q 035853 384 CTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP-EYQFPPRLIELSLSNTELK 461 (581)
Q Consensus 384 ~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp-~~~~l~~L~~L~L~~~~l~ 461 (581)
.++..+. ++|+.|++++|. ...+|..+. ++|+.|+++++. + .+| .+ .++|++|++++|.++
T Consensus 318 ~LP~~l~--~sL~~L~Ls~N~---Lt~LP~~l~--~sL~~L~Ls~N~--------L~~LP~~l--p~~L~~LdLs~N~Lt 380 (754)
T PRK15370 318 ALPETLP--PGLKTLEAGENA---LTSLPASLP--PELQVLDVSKNQ--------ITVLPETL--PPTITTLDVSRNALT 380 (754)
T ss_pred cCCcccc--ccceeccccCCc---cccCChhhc--CcccEEECCCCC--------CCcCChhh--cCCcCEEECCCCcCC
Confidence 3333332 456666666663 223444332 456666666544 4 455 33 245666666666554
Q ss_pred CCCcccccCCCCCCeEEEecCcccCce--eeeCCCCCCCCcEEEecCC
Q 035853 462 YDPMPALEKLPHLRVLKLKKNSFFGRK--LVCSSGGFPSLKVMHLKSM 507 (581)
Q Consensus 462 ~~~~~~l~~l~~L~~L~L~~~~~~~~~--~~~~~~~~~~L~~L~l~~~ 507 (581)
. .++.+. ++|+.|++++|.+.... ++.....++++..|++.+|
T Consensus 381 ~-LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~N 425 (754)
T PRK15370 381 N-LPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYN 425 (754)
T ss_pred C-CCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCC
Confidence 2 222222 24555666655543211 1112233455555555555
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-17 Score=142.01 Aligned_cols=166 Identities=20% Similarity=0.296 Sum_probs=147.1
Q ss_pred ccccc-CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccC
Q 035853 239 SWEHF-DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLP 317 (581)
Q Consensus 239 ~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp 317 (581)
++.-+ ++++..|.++.+... .. ++-+..+.+|++|++++++++++|.+++.++.||.|+++-|++..+|
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~-------~v---ppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lp 95 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLT-------VV---PPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILP 95 (264)
T ss_pred cccccchhhhhhhhcccCcee-------ec---CCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCc
Confidence 34444 788888888888763 33 67888999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCcEEEecCCcc--cccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCC
Q 035853 318 SSLCNLLSLHTLDMRWSYI--HHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPS 394 (581)
Q Consensus 318 ~~i~~L~~L~~L~l~~~~l--~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~ 394 (581)
..++.++.|++||+.++++ ..+|..+..++.|+.|+++.|.+. .+|..++++++||.|.+..++ ..+|.+++.+..
T Consensus 96 rgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~ 174 (264)
T KOG0617|consen 96 RGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTR 174 (264)
T ss_pred cccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHHHHH
Confidence 9999999999999999955 678999999999999999999987 889999999999999999998 889999999999
Q ss_pred CCeEEEeeecccchhchhhhcCCC
Q 035853 395 LQTFRVHENLSSYQSMLSNNLCPL 418 (581)
Q Consensus 395 L~~L~l~~~~~~~~~~l~~~l~~~ 418 (581)
|++|+|.++ ....+|..++.+
T Consensus 175 lrelhiqgn---rl~vlppel~~l 195 (264)
T KOG0617|consen 175 LRELHIQGN---RLTVLPPELANL 195 (264)
T ss_pred HHHHhcccc---eeeecChhhhhh
Confidence 999999999 455666665543
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.5e-16 Score=157.78 Aligned_cols=265 Identities=19% Similarity=0.148 Sum_probs=119.7
Q ss_pred HHHhccCCceeEEEecCcccc-----cCCCcccCcCCCcEEeccCCCCcc-------cChhhhcccCCcEEEecCCccc-
Q 035853 271 NAICKWFKFLRLLDLGTIVLD-----EYPAGINPLLLLKYLVLNIPSLKH-------LPSSLCNLLSLHTLDMRWSYIH- 337 (581)
Q Consensus 271 ~~~~~~~~~Lr~L~L~~~~l~-----~lp~~i~~l~~Lr~L~L~~~~i~~-------lp~~i~~L~~L~~L~l~~~~l~- 337 (581)
...+..+.+|++|+++++.++ .++..+...+.|++|+++++.+.. ++..+.++++|+.|++++|.+.
T Consensus 16 ~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 95 (319)
T cd00116 16 TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP 95 (319)
T ss_pred HHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh
Confidence 345555666777777776653 344445555566666666654432 2233445556666666555443
Q ss_pred ccchhhhcCCC---CcEeecCCcccCCCCCCccCCCCCCcEeceecCCCcchhhhCCC-CCCCeEEEeeec--ccchhch
Q 035853 338 HTPDEIWKMNE---LRHLNFGSITLPAHPGKCCSSLENLNFISVLHPSSCTQDILGRL-PSLQTFRVHENL--SSYQSML 411 (581)
Q Consensus 338 ~lp~~i~~l~~---L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~l~~l-~~L~~L~l~~~~--~~~~~~l 411 (581)
..+..+..+.+ |++|++++|.+..... ..+...+..+ ++|+.|++++|. ......+
T Consensus 96 ~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~------------------~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 96 DGCGVLESLLRSSSLQELKLNNNGLGDRGL------------------RLLAKGLKDLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred hHHHHHHHHhccCcccEEEeeCCccchHHH------------------HHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence 22333333333 5555555554431000 0112233334 455555555554 0011223
Q ss_pred hhhcCCCCCCCEEEeecCCcccCCcccc-cCC-CCCCCCCccEEEEeeccCCCCC----cccccCCCCCCeEEEecCccc
Q 035853 412 SNNLCPLLHLESLKLVDERTIALQPSSI-VLP-EYQFPPRLIELSLSNTELKYDP----MPALEKLPHLRVLKLKKNSFF 485 (581)
Q Consensus 412 ~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp-~~~~l~~L~~L~L~~~~l~~~~----~~~l~~l~~L~~L~L~~~~~~ 485 (581)
+..+..+++|+.|++++++ +....+ .++ .+..+++|++|++++|.+.+.. ...+..+++|++|++++|.+.
T Consensus 158 ~~~~~~~~~L~~L~l~~n~---l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 158 AKALRANRDLKELNLANNG---IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHHHhCCCcCEEECcCCC---CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 3334444445555544422 000000 111 1223345666666665544321 223445566666666666554
Q ss_pred CceeeeCC----CCCCCCcEEEecCCCcc----cccccCcccccccceEeeccCcCCCC----CcccccCC-CCccEEEe
Q 035853 486 GRKLVCSS----GGFPSLKVMHLKSMFWL----EEWTMENDAMPKLESLIINPCAYLKI----LPEELWRI-KSLTKLEL 552 (581)
Q Consensus 486 ~~~~~~~~----~~~~~L~~L~l~~~~~l----~~l~~~~~~l~~L~~L~l~~c~~l~~----lp~~l~~l-~~L~~L~l 552 (581)
+..+.... ...+.|++|++.+|... ..+......+++|+.+++++|..... +...+... +.|+++++
T Consensus 235 ~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~ 314 (319)
T cd00116 235 DAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWV 314 (319)
T ss_pred hHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhccc
Confidence 32211111 12356666666665321 12222334456666666666654322 22233333 56666666
Q ss_pred eCCC
Q 035853 553 WWPR 556 (581)
Q Consensus 553 ~~c~ 556 (581)
.++|
T Consensus 315 ~~~~ 318 (319)
T cd00116 315 KDDS 318 (319)
T ss_pred CCCC
Confidence 5554
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-14 Score=159.86 Aligned_cols=200 Identities=22% Similarity=0.150 Sum_probs=146.2
Q ss_pred ccccc-CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcc--cccCCC-cccCcCCCcEEeccCCC-C
Q 035853 239 SWEHF-DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIV--LDEYPA-GINPLLLLKYLVLNIPS-L 313 (581)
Q Consensus 239 ~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~--l~~lp~-~i~~l~~Lr~L~L~~~~-i 313 (581)
.++.. ...+|...+.++.... ...-..++.|++|-+.++. +..++. .|..+++||+|||++|. +
T Consensus 516 ~~~~~~~~~~rr~s~~~~~~~~-----------~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l 584 (889)
T KOG4658|consen 516 IPQVKSWNSVRRMSLMNNKIEH-----------IAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSL 584 (889)
T ss_pred cccccchhheeEEEEeccchhh-----------ccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCcc
Confidence 34444 7788998888887744 2233345579999999986 555553 47789999999999865 7
Q ss_pred cccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC----Ccchhhh
Q 035853 314 KHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS----SCTQDIL 389 (581)
Q Consensus 314 ~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~----~~~~~~l 389 (581)
.++|.+|++|.+|++|+++++.+..+|.+++++.+|.+|++..+.....+|.....|.+|++|.+.... .....++
T Consensus 585 ~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el 664 (889)
T KOG4658|consen 585 SKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKEL 664 (889)
T ss_pred CcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhh
Confidence 799999999999999999999999999999999999999999887765666666679999999998765 4556677
Q ss_pred CCCCCCCeEEEeeecccchhchhhhcCCCCCCC----EEEeecCCcccCCcccc-cCC-CCCCCCCccEEEEeeccCC
Q 035853 390 GRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLE----SLKLVDERTIALQPSSI-VLP-EYQFPPRLIELSLSNTELK 461 (581)
Q Consensus 390 ~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~----~L~l~~~~~i~L~~l~l-~lp-~~~~l~~L~~L~L~~~~l~ 461 (581)
.++.+|+.+.+.... . .+...+..+..|. .+.+.++. . ..+ .+..+.+|+.|.+.+|...
T Consensus 665 ~~Le~L~~ls~~~~s--~--~~~e~l~~~~~L~~~~~~l~~~~~~--------~~~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 665 ENLEHLENLSITISS--V--LLLEDLLGMTRLRSLLQSLSIEGCS--------KRTLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred hcccchhhheeecch--h--HhHhhhhhhHHHHHHhHhhhhcccc--------cceeecccccccCcceEEEEcCCCc
Confidence 788888888886654 1 2222223333333 22222211 2 333 5667888888888888754
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.2e-15 Score=150.78 Aligned_cols=255 Identities=18% Similarity=0.064 Sum_probs=152.0
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCccccc-------CCCcccCcCCCcEEeccCCCCc-c
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDE-------YPAGINPLLLLKYLVLNIPSLK-H 315 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~-------lp~~i~~l~~Lr~L~L~~~~i~-~ 315 (581)
..+++.+.+.++...... . ... ...+...+.|+.|+++++.+.. ++..+..+++|++|++++|.+. .
T Consensus 22 l~~L~~l~l~~~~l~~~~-~-~~i---~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEA-A-KAL---ASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HhhccEEeecCCCCcHHH-H-HHH---HHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 667999999988763311 0 122 4567788889999999987652 3345677889999999999987 4
Q ss_pred cChhhhcccC---CcEEEecCCccc-----ccchhhhcC-CCCcEeecCCcccCCC----CCCccCCCCCCcEeceecCC
Q 035853 316 LPSSLCNLLS---LHTLDMRWSYIH-----HTPDEIWKM-NELRHLNFGSITLPAH----PGKCCSSLENLNFISVLHPS 382 (581)
Q Consensus 316 lp~~i~~L~~---L~~L~l~~~~l~-----~lp~~i~~l-~~L~~L~l~~~~~~~~----~p~~i~~l~~L~~L~l~~~~ 382 (581)
.+..+..+.+ |+.|++++|.+. .+...+..+ ++|+.|++++|.+.+. ++..+..+++|++|++.++.
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG 176 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC
Confidence 5566666665 999999999765 334456667 8999999999987642 22234455566666666655
Q ss_pred -C-----cchhhhCCCCCCCeEEEeeec--ccchhchhhhcCCCCCCCEEEeecCCcccCCcccccCCCCCCCCCccEEE
Q 035853 383 -S-----CTQDILGRLPSLQTFRVHENL--SSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVLPEYQFPPRLIELS 454 (581)
Q Consensus 383 -~-----~~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l~lp~~~~l~~L~~L~ 454 (581)
. .++..+..+++|+.|++++|. ......+... +..+++|++|+
T Consensus 177 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~-----------------------------~~~~~~L~~L~ 227 (319)
T cd00116 177 IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET-----------------------------LASLKSLEVLN 227 (319)
T ss_pred CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH-----------------------------hcccCCCCEEe
Confidence 1 122334444566666666554 0011122222 33455666666
Q ss_pred EeeccCCCCCccccc-----CCCCCCeEEEecCcccCce---eeeCCCCCCCCcEEEecCCCcccc----cccCcccc-c
Q 035853 455 LSNTELKYDPMPALE-----KLPHLRVLKLKKNSFFGRK---LVCSSGGFPSLKVMHLKSMFWLEE----WTMENDAM-P 521 (581)
Q Consensus 455 L~~~~l~~~~~~~l~-----~l~~L~~L~L~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~l~~----l~~~~~~l-~ 521 (581)
+++|.+++..+..+. ..+.|+.|++++|.+.+.. +......+++|+.+++++|.--.. +....... +
T Consensus 228 ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~ 307 (319)
T cd00116 228 LGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGN 307 (319)
T ss_pred cCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCC
Confidence 666655432222221 1356777777766554221 111233446677777776632211 22233444 6
Q ss_pred ccceEeeccCc
Q 035853 522 KLESLIINPCA 532 (581)
Q Consensus 522 ~L~~L~l~~c~ 532 (581)
.|++|++.+++
T Consensus 308 ~~~~~~~~~~~ 318 (319)
T cd00116 308 ELESLWVKDDS 318 (319)
T ss_pred chhhcccCCCC
Confidence 67777776654
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.8e-14 Score=136.21 Aligned_cols=135 Identities=17% Similarity=0.118 Sum_probs=100.5
Q ss_pred CcccccCCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccc-cCCCcccCcCCCcEEeccC-CCCcc
Q 035853 238 DSWEHFDTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLD-EYPAGINPLLLLKYLVLNI-PSLKH 315 (581)
Q Consensus 238 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~-~lp~~i~~l~~Lr~L~L~~-~~i~~ 315 (581)
.+|..+.+....+.+..+.... .+ +..|+.+++||.|||++|.|+ --|..|..+..|-.|-+.+ |+|+.
T Consensus 60 eVP~~LP~~tveirLdqN~I~~------iP---~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 60 EVPANLPPETVEIRLDQNQISS------IP---PGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred cCcccCCCcceEEEeccCCccc------CC---hhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence 3555556777778887777653 45 788888899999999988888 5577788888877776666 78888
Q ss_pred cCh-hhhcccCCcEEEecCCcccccch-hhhcCCCCcEeecCCcccCCCCCC-ccCCCCCCcEeceecCC
Q 035853 316 LPS-SLCNLLSLHTLDMRWSYIHHTPD-EIWKMNELRHLNFGSITLPAHPGK-CCSSLENLNFISVLHPS 382 (581)
Q Consensus 316 lp~-~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~~ 382 (581)
+|+ .+++|..|+-|.+.-|.+.-++. .+..+++|..|.+..|.+. .++. .+..+.+++++.+..+.
T Consensus 131 l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCc
Confidence 884 47788888888888877766654 4677888888888888776 3443 57777788877765543
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.8e-14 Score=133.72 Aligned_cols=253 Identities=17% Similarity=0.172 Sum_probs=144.3
Q ss_pred ceeEEEecCcccccCC-CcccCcCCCcEEeccCCCCcc-cChhhhcccCCcEEEecC-Ccccccchh-hhcCCCCcEeec
Q 035853 279 FLRLLDLGTIVLDEYP-AGINPLLLLKYLVLNIPSLKH-LPSSLCNLLSLHTLDMRW-SYIHHTPDE-IWKMNELRHLNF 354 (581)
Q Consensus 279 ~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~-lp~~i~~L~~L~~L~l~~-~~l~~lp~~-i~~l~~L~~L~l 354 (581)
.-..++|..|.|+.+| ..|+.+++||.|+|+.|.|+. -|..+..|..|..|-+.+ |+|+.+|++ ++.|..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 3456788888888777 457788888888888888884 456788888888777777 588888865 567888888888
Q ss_pred CCcccCCCCCCccCCCCCCcEeceecCC-Ccchh-hhCCCCCCCeEEEeeec----------ccchhchhhhcCCCCCCC
Q 035853 355 GSITLPAHPGKCCSSLENLNFISVLHPS-SCTQD-ILGRLPSLQTFRVHENL----------SSYQSMLSNNLCPLLHLE 422 (581)
Q Consensus 355 ~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~----------~~~~~~l~~~l~~~~~L~ 422 (581)
.-|++.-.....+..+++|..|.+..+. ..+.. .+..+.+++.+.+..+. .......|..++..+...
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 7777765555667778888888877776 33333 45556666665554432 001111222222222222
Q ss_pred EEEeecC-------Ccc--cCCccc-------c---cCC--CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEec
Q 035853 423 SLKLVDE-------RTI--ALQPSS-------I---VLP--EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKK 481 (581)
Q Consensus 423 ~L~l~~~-------~~i--~L~~l~-------l---~lp--~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~ 481 (581)
...+... +.+ .++.+. + ..| .+..+++|++|++++|.++..-..+|.++..++.|.|..
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence 2222110 000 000000 0 223 355566666666666666555555566666666666665
Q ss_pred CcccCceeeeCCCCCCCCcEEEecCCCcccccccCcccccccceEeeccCc
Q 035853 482 NSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCA 532 (581)
Q Consensus 482 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 532 (581)
|.+.... ...+.++..|+.|+|.++....--|..+..+.+|.+|.+-.||
T Consensus 308 N~l~~v~-~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 308 NKLEFVS-SGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred chHHHHH-HHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 5542221 2234555566666666653222234445555556666655554
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.8e-11 Score=123.20 Aligned_cols=175 Identities=23% Similarity=0.228 Sum_probs=138.0
Q ss_pred HHHhccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCc
Q 035853 271 NAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELR 350 (581)
Q Consensus 271 ~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~ 350 (581)
+..+..|..|..|.|..|.+..+|..++++..|.||+|+.|.+..+|..++.|+ |+.|.+++|+++.+|..++.+..|.
T Consensus 91 p~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~ 169 (722)
T KOG0532|consen 91 PEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLA 169 (722)
T ss_pred chHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHH
Confidence 456667777888888888888888888888889999999888888888888776 8888888888888888888888888
Q ss_pred EeecCCcccCCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecC
Q 035853 351 HLNFGSITLPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDE 429 (581)
Q Consensus 351 ~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~ 429 (581)
+||.+.|.+. .+|..++.+.+|+.|.+..+. ..+|.++..| .|..|+++++ ....+|..+.+|++|+.|-|.++
T Consensus 170 ~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScN---kis~iPv~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 170 HLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCN---KISYLPVDFRKMRHLQVLQLENN 244 (722)
T ss_pred Hhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccC---ceeecchhhhhhhhheeeeeccC
Confidence 9988888876 677788888888888888777 7788888755 4778888887 66778888888888888888874
Q ss_pred CcccCCcccc-cCC-C---CCCCCCccEEEEeecc
Q 035853 430 RTIALQPSSI-VLP-E---YQFPPRLIELSLSNTE 459 (581)
Q Consensus 430 ~~i~L~~l~l-~lp-~---~~~l~~L~~L~L~~~~ 459 (581)
. + +-| . -+...-.++|+..-|.
T Consensus 245 P--------LqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 245 P--------LQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred C--------CCCChHHHHhccceeeeeeecchhcc
Confidence 4 4 333 2 2334445677777763
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2e-11 Score=122.96 Aligned_cols=167 Identities=26% Similarity=0.392 Sum_probs=122.9
Q ss_pred eEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccC
Q 035853 281 RLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLP 360 (581)
Q Consensus 281 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~ 360 (581)
...|++.|++..+|..++.+..|..+.|..|.+..+|..+++|..|.+|||+.|.+..+|..++.|+ |+.|-+++|++.
T Consensus 78 ~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~ 156 (722)
T KOG0532|consen 78 VFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLT 156 (722)
T ss_pred hhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccc
Confidence 4467777777777777777777777777777777777777777777777887777777777777664 777777777765
Q ss_pred CCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc
Q 035853 361 AHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI 439 (581)
Q Consensus 361 ~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l 439 (581)
.+|..++.+..|..|+.+.|. ..++..++.+.+|+.|.+..+ ....+|+.+..+ .|..|+++++. +
T Consensus 157 -~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn---~l~~lp~El~~L-pLi~lDfScNk--------i 223 (722)
T KOG0532|consen 157 -SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN---HLEDLPEELCSL-PLIRLDFSCNK--------I 223 (722)
T ss_pred -cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh---hhhhCCHHHhCC-ceeeeecccCc--------e
Confidence 677777777777777777776 677777777777777777776 455666666643 47777777755 6
Q ss_pred -cCC-CCCCCCCccEEEEeeccCC
Q 035853 440 -VLP-EYQFPPRLIELSLSNTELK 461 (581)
Q Consensus 440 -~lp-~~~~l~~L~~L~L~~~~l~ 461 (581)
.+| .+..+..|++|.|.+|.+.
T Consensus 224 s~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 224 SYLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred eecchhhhhhhhheeeeeccCCCC
Confidence 777 7777777888877777754
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.5e-10 Score=116.71 Aligned_cols=179 Identities=25% Similarity=0.254 Sum_probs=122.3
Q ss_pred HHhccCCceeEEEecCcccccCCCcccCcC-CCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCc
Q 035853 272 AICKWFKFLRLLDLGTIVLDEYPAGINPLL-LLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELR 350 (581)
Q Consensus 272 ~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~-~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~ 350 (581)
......+.++.|++.++.++++|.....+. +|++|++++|.+..+|..++.+++|+.|++++|.+.++|...+.+++|+
T Consensus 110 ~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 110 SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLN 189 (394)
T ss_pred hhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhh
Confidence 444555778888888888888887777774 8888888888888887778888888888888888888888777788888
Q ss_pred EeecCCcccCCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecC
Q 035853 351 HLNFGSITLPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDE 429 (581)
Q Consensus 351 ~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~ 429 (581)
.|++++|.+. .+|..++....|+++.+..+. ...+..+.++.++..+.+.++. ...++.
T Consensus 190 ~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~---~~~~~~---------------- 249 (394)
T COG4886 190 NLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK---LEDLPE---------------- 249 (394)
T ss_pred heeccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce---eeeccc----------------
Confidence 8888888876 566655566667777776664 4455555555555555544442 111122
Q ss_pred CcccCCcccccCCCCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCccc
Q 035853 430 RTIALQPSSIVLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFF 485 (581)
Q Consensus 430 ~~i~L~~l~l~lp~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~ 485 (581)
.++.++++++|++++|.++... .++.+.+|+.|+++++.+.
T Consensus 250 -------------~~~~l~~l~~L~~s~n~i~~i~--~~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 250 -------------SIGNLSNLETLDLSNNQISSIS--SLGSLTNLRELDLSGNSLS 290 (394)
T ss_pred -------------hhccccccceeccccccccccc--cccccCccCEEeccCcccc
Confidence 3445556666666666543322 2666667777777665543
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.9e-10 Score=114.51 Aligned_cols=170 Identities=26% Similarity=0.308 Sum_probs=140.9
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCC-ceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhc
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFK-FLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCN 322 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~ 322 (581)
.+.++.|.+.++..... .+....+. +|+.|+++++.+..+|..+..+++|+.|+++.|++..+|...+.
T Consensus 115 ~~~l~~L~l~~n~i~~i----------~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~ 184 (394)
T COG4886 115 LTNLTSLDLDNNNITDI----------PPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSN 184 (394)
T ss_pred ccceeEEecCCcccccC----------ccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhh
Confidence 56788998888877542 34445553 99999999999999988899999999999999999999988889
Q ss_pred ccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEEEe
Q 035853 323 LLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFRVH 401 (581)
Q Consensus 323 L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~ 401 (581)
+.+|+.|+++++.+..+|..+.....|+.|.+++|... ..+..+.+++++..+.+..+. ...+..++.+++++.|+++
T Consensus 185 ~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s 263 (394)
T COG4886 185 LSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLS 263 (394)
T ss_pred hhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeeccchhccccccceeccc
Confidence 99999999999999999998877888999999999543 567778899999999866665 5557888899999999999
Q ss_pred eecccchhchhhhcCCCCCCCEEEeec
Q 035853 402 ENLSSYQSMLSNNLCPLLHLESLKLVD 428 (581)
Q Consensus 402 ~~~~~~~~~l~~~l~~~~~L~~L~l~~ 428 (581)
++. ...++. +....+++.|++++
T Consensus 264 ~n~---i~~i~~-~~~~~~l~~L~~s~ 286 (394)
T COG4886 264 NNQ---ISSISS-LGSLTNLRELDLSG 286 (394)
T ss_pred ccc---cccccc-ccccCccCEEeccC
Confidence 984 333333 66777777777776
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.4e-10 Score=113.40 Aligned_cols=230 Identities=20% Similarity=0.131 Sum_probs=140.5
Q ss_pred cCcCCCcEEeccCCCCcccC--hhhhcccCCcEEEecCCcc---cccchhhhcCCCCcEeecCCcccCCCCCCccCCCCC
Q 035853 298 NPLLLLKYLVLNIPSLKHLP--SSLCNLLSLHTLDMRWSYI---HHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLEN 372 (581)
Q Consensus 298 ~~l~~Lr~L~L~~~~i~~lp--~~i~~L~~L~~L~l~~~~l---~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~ 372 (581)
.++..||...|.++.+...+ .....|++++.|||+.|-+ ..+-.-...+++|+.|+++.|.+.. |.+ +
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~--~~~--s--- 190 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSN--FIS--S--- 190 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccC--Ccc--c---
Confidence 46788888888888887666 3567788889999988833 3333445678888888888887642 211 0
Q ss_pred CcEeceecCCCcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccccCC-CCCCCCCcc
Q 035853 373 LNFISVLHPSSCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVLP-EYQFPPRLI 451 (581)
Q Consensus 373 L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l~lp-~~~~l~~L~ 451 (581)
..+ ..++.|+.|.++.|. .....+...+..+++|+.|.+.++..+ +... ...-+..|+
T Consensus 191 ~~~--------------~~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~------~~~~~~~~i~~~L~ 249 (505)
T KOG3207|consen 191 NTT--------------LLLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEII------LIKATSTKILQTLQ 249 (505)
T ss_pred cch--------------hhhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhccccc------ceecchhhhhhHHh
Confidence 000 134556666666664 112333344445566666666654210 0101 122356778
Q ss_pred EEEEeeccCCC-CCcccccCCCCCCeEEEecCcccCceeeeC-----CCCCCCCcEEEecCCCccccccc--Cccccccc
Q 035853 452 ELSLSNTELKY-DPMPALEKLPHLRVLKLKKNSFFGRKLVCS-----SGGFPSLKVMHLKSMFWLEEWTM--ENDAMPKL 523 (581)
Q Consensus 452 ~L~L~~~~l~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~l~~l~~--~~~~l~~L 523 (581)
.|+|++|.+.. +.....+.+|.|+.|.++.+.+.....+.. ...||+|+.|++..| .+.+|+. .+..+++|
T Consensus 250 ~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nl 328 (505)
T KOG3207|consen 250 ELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENL 328 (505)
T ss_pred hccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccC-ccccccccchhhccchh
Confidence 88888876543 334567788888888888777655443332 456899999999987 4555653 35567888
Q ss_pred ceEeeccCcCCCCC----cccccCCCCccEEEeeCCC
Q 035853 524 ESLIINPCAYLKIL----PEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 524 ~~L~l~~c~~l~~l----p~~l~~l~~L~~L~l~~c~ 556 (581)
+.|.+..++..+.- -..+..+++|..|.=.+|.
T Consensus 329 k~l~~~~n~ln~e~~~a~~~VIAr~~~l~~LN~~di~ 365 (505)
T KOG3207|consen 329 KHLRITLNYLNKETDTAKLLVIARISQLVKLNDVDIS 365 (505)
T ss_pred hhhhcccccccccccceeEEeeeehhhhhhhcccccC
Confidence 88888877643210 1134555666665555554
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.2e-11 Score=117.27 Aligned_cols=287 Identities=17% Similarity=0.111 Sum_probs=156.7
Q ss_pred CcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcc-cc--cCCCcccCcCCCcEEeccCCC-Ccc--cCh
Q 035853 245 TYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIV-LD--EYPAGINPLLLLKYLVLNIPS-LKH--LPS 318 (581)
Q Consensus 245 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~-l~--~lp~~i~~l~~Lr~L~L~~~~-i~~--lp~ 318 (581)
..+|.|.+.+......+ .+ ..+-.+++++..|.+.+|. ++ .+..--..+++|++|++..|. ++. +-.
T Consensus 138 g~lk~LSlrG~r~v~~s----sl---rt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~ 210 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDS----SL---RTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKY 210 (483)
T ss_pred cccccccccccccCCcc----hh---hHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHH
Confidence 35666777666554322 23 4666778888888888776 33 111112356778888887743 441 212
Q ss_pred hhhcccCCcEEEecCC-cccc--cchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCCCcchhhhCCCCCC
Q 035853 319 SLCNLLSLHTLDMRWS-YIHH--TPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPSSCTQDILGRLPSL 395 (581)
Q Consensus 319 ~i~~L~~L~~L~l~~~-~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~l~~l~~L 395 (581)
-...+++|.+|++++| .+.. +..-...+.+++.+.+.||.-.+ . ..+...-+.+..+
T Consensus 211 la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~---l-----------------e~l~~~~~~~~~i 270 (483)
T KOG4341|consen 211 LAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE---L-----------------EALLKAAAYCLEI 270 (483)
T ss_pred HHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc---H-----------------HHHHHHhccChHh
Confidence 2345777788888877 4432 11111223333333333322110 0 1111111223333
Q ss_pred CeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC-C--CCCCCCccEEEEeecc-CCCCCccccc-
Q 035853 396 QTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP-E--YQFPPRLIELSLSNTE-LKYDPMPALE- 469 (581)
Q Consensus 396 ~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp-~--~~~l~~L~~L~L~~~~-l~~~~~~~l~- 469 (581)
.++++..|.......+-..-..+..|+.|..+++.. + ..+ | ..++++|+.|.+..|. ++......++
T Consensus 271 ~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~-------~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r 343 (483)
T KOG4341|consen 271 LKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTD-------ITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR 343 (483)
T ss_pred hccchhhhccccchHHHHHhhhhhHhhhhcccCCCC-------CchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc
Confidence 334433333111111111222334455555554221 1 111 1 2356777888887774 3333333333
Q ss_pred CCCCCCeEEEecCcccCce-eeeCCCCCCCCcEEEecCCCccccc-----ccCcccccccceEeeccCcCCC-CCccccc
Q 035853 470 KLPHLRVLKLKKNSFFGRK-LVCSSGGFPSLKVMHLKSMFWLEEW-----TMENDAMPKLESLIINPCAYLK-ILPEELW 542 (581)
Q Consensus 470 ~l~~L~~L~L~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~l-----~~~~~~l~~L~~L~l~~c~~l~-~lp~~l~ 542 (581)
+++.|+.+++.++...... +.....++|.|+.|.+++|..++.. ...-.++..|+.+.+++||.+. ..-..+.
T Consensus 344 n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~ 423 (483)
T KOG4341|consen 344 NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS 423 (483)
T ss_pred CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh
Confidence 5788888888877653332 3334567888999999888666543 3334567889999999999764 3335677
Q ss_pred CCCCccEEEeeCCCHHHHHHHhh
Q 035853 543 RIKSLTKLELWWPRFELRETLRK 565 (581)
Q Consensus 543 ~l~~L~~L~l~~c~~~~~~~~~~ 565 (581)
.+++|+.+++.+|.....+.++.
T Consensus 424 ~c~~Leri~l~~~q~vtk~~i~~ 446 (483)
T KOG4341|consen 424 ICRNLERIELIDCQDVTKEAISR 446 (483)
T ss_pred hCcccceeeeechhhhhhhhhHH
Confidence 88899999999999777777776
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.91 E-value=7e-10 Score=99.21 Aligned_cols=82 Identities=22% Similarity=0.228 Sum_probs=18.7
Q ss_pred CCceeEEEecCcccccCCCccc-CcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhh-hcCCCCcEeec
Q 035853 277 FKFLRLLDLGTIVLDEYPAGIN-PLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEI-WKMNELRHLNF 354 (581)
Q Consensus 277 ~~~Lr~L~L~~~~l~~lp~~i~-~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l 354 (581)
...+|.|+|.++.++.+. .++ .+.+|+.|++++|.|+.++ .+..+++|++|++++|.+..++..+ ..+++|++|++
T Consensus 18 ~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred cccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 334555666665555432 333 3455556666666555553 4555556666666665555554444 24555666665
Q ss_pred CCcccC
Q 035853 355 GSITLP 360 (581)
Q Consensus 355 ~~~~~~ 360 (581)
++|.+.
T Consensus 96 ~~N~I~ 101 (175)
T PF14580_consen 96 SNNKIS 101 (175)
T ss_dssp TTS---
T ss_pred cCCcCC
Confidence 555553
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.1e-10 Score=111.13 Aligned_cols=206 Identities=17% Similarity=0.132 Sum_probs=135.0
Q ss_pred HHhccCCceeEEEecCcccccCC--CcccCcCCCcEEeccCCCCc---ccChhhhcccCCcEEEecCCcccccchh--hh
Q 035853 272 AICKWFKFLRLLDLGTIVLDEYP--AGINPLLLLKYLVLNIPSLK---HLPSSLCNLLSLHTLDMRWSYIHHTPDE--IW 344 (581)
Q Consensus 272 ~~~~~~~~Lr~L~L~~~~l~~lp--~~i~~l~~Lr~L~L~~~~i~---~lp~~i~~L~~L~~L~l~~~~l~~lp~~--i~ 344 (581)
.-=++++.||...|.++.+...+ .....|+++|.|+|+.|-+. .+.+-+..|++|+.|+++.|.+....++ -.
T Consensus 115 akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~ 194 (505)
T KOG3207|consen 115 AKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL 194 (505)
T ss_pred HHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh
Confidence 33457888999999999987555 46778999999999998654 4445567899999999999966443322 23
Q ss_pred cCCCCcEeecCCcccCCC-CCCccCCCCCCcEeceecCC--CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCC
Q 035853 345 KMNELRHLNFGSITLPAH-PGKCCSSLENLNFISVLHPS--SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHL 421 (581)
Q Consensus 345 ~l~~L~~L~l~~~~~~~~-~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L 421 (581)
.++.|+.|.++.|.+... +..-...+++|+.|++..+. ........-+..|+.|+++++. ..........+.++.|
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L 273 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGL 273 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccccch
Confidence 578899999998887642 22223456788888888874 2222223345678888888875 1111222445667777
Q ss_pred CEEEeecCCcccCCcccc---cCC-C-----CCCCCCccEEEEeeccCCC-CCcccccCCCCCCeEEEecCcccC
Q 035853 422 ESLKLVDERTIALQPSSI---VLP-E-----YQFPPRLIELSLSNTELKY-DPMPALEKLPHLRVLKLKKNSFFG 486 (581)
Q Consensus 422 ~~L~l~~~~~i~L~~l~l---~lp-~-----~~~l~~L~~L~L~~~~l~~-~~~~~l~~l~~L~~L~L~~~~~~~ 486 (581)
+.|.++.++ + .+| . ...+++|++|.+..|++.. .....+..+++|+.|.+..+.+..
T Consensus 274 ~~Lnls~tg--------i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 274 NQLNLSSTG--------IASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hhhhccccC--------cchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 777777655 3 233 1 2456777777777776532 223334456677777766555543
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.5e-10 Score=108.89 Aligned_cols=246 Identities=20% Similarity=0.202 Sum_probs=136.7
Q ss_pred HHHhccCCceeEEEecCcccc-----cCCCcccCcCCCcEEeccCC---CC-cccChhh-------hcccCCcEEEecCC
Q 035853 271 NAICKWFKFLRLLDLGTIVLD-----EYPAGINPLLLLKYLVLNIP---SL-KHLPSSL-------CNLLSLHTLDMRWS 334 (581)
Q Consensus 271 ~~~~~~~~~Lr~L~L~~~~l~-----~lp~~i~~l~~Lr~L~L~~~---~i-~~lp~~i-------~~L~~L~~L~l~~~ 334 (581)
.+....+..+..++|++|.+. .+-+.+.+.++||..++++- +. .++|+.+ -.+++|++|||+.|
T Consensus 23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 466777888888899988865 23345566678888888762 12 2455443 34456666666666
Q ss_pred ccc--cc---chhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCCCcchhhhCCCCCCCeEEEeeec--ccc
Q 035853 335 YIH--HT---PDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPSSCTQDILGRLPSLQTFRVHENL--SSY 407 (581)
Q Consensus 335 ~l~--~l---p~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~ 407 (581)
.++ .+ -.-+.++..|++|.|.+|-+...--..++ ..|++|. ....++.-++||.+....|. +..
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~--~al~~l~-------~~kk~~~~~~Lrv~i~~rNrlen~g 173 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG--RALFELA-------VNKKAASKPKLRVFICGRNRLENGG 173 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH--HHHHHHH-------HHhccCCCcceEEEEeecccccccc
Confidence 331 11 12234455555555555543210000010 0111111 12234456678888877776 333
Q ss_pred hhchhhhcCCCCCCCEEEeecCCcccCCcccc---c---CC-CCCCCCCccEEEEeeccCCCCC----cccccCCCCCCe
Q 035853 408 QSMLSNNLCPLLHLESLKLVDERTIALQPSSI---V---LP-EYQFPPRLIELSLSNTELKYDP----MPALEKLPHLRV 476 (581)
Q Consensus 408 ~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l---~---lp-~~~~l~~L~~L~L~~~~l~~~~----~~~l~~l~~L~~ 476 (581)
...+...+...+.|+.+.+..++ + . +- .+..+++|+.|+|.+|.++... ...+..+|+|+.
T Consensus 174 a~~~A~~~~~~~~leevr~~qN~--------I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 174 ATALAEAFQSHPTLEEVRLSQNG--------IRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred HHHHHHHHHhccccceEEEeccc--------ccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence 44455566666777777777644 2 0 11 2456777888888777665432 223455677777
Q ss_pred EEEecCcccCceee----eCCCCCCCCcEEEecCCCccc----ccccCcccccccceEeeccCcC
Q 035853 477 LKLKKNSFFGRKLV----CSSGGFPSLKVMHLKSMFWLE----EWTMENDAMPKLESLIINPCAY 533 (581)
Q Consensus 477 L~L~~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~l~----~l~~~~~~l~~L~~L~l~~c~~ 533 (581)
|.+++|.+...... .....+|+|+.|.+.+|..-. .+.......|.|+.|++++|..
T Consensus 246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 77777766543311 112347777777777763221 1222344577777788877764
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.79 E-value=7.7e-10 Score=103.15 Aligned_cols=83 Identities=27% Similarity=0.215 Sum_probs=36.7
Q ss_pred CCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccc--cCcccccc
Q 035853 445 QFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWT--MENDAMPK 522 (581)
Q Consensus 445 ~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~l~~ 522 (581)
..+++|+.|+|++|.++ ....+-.++-|.+.|.|++|.+... .....+.+|..|++++| +++.+. ..++++|.
T Consensus 326 a~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L---SGL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPC 400 (490)
T KOG1259|consen 326 AELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL---SGLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPC 400 (490)
T ss_pred hhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh---hhhHhhhhheecccccc-chhhHHHhcccccccH
Confidence 34444555555544432 1112222344444555544433221 12333445555555554 333332 23556666
Q ss_pred cceEeeccCc
Q 035853 523 LESLIINPCA 532 (581)
Q Consensus 523 L~~L~l~~c~ 532 (581)
|+.+.+.+||
T Consensus 401 LE~l~L~~NP 410 (490)
T KOG1259|consen 401 LETLRLTGNP 410 (490)
T ss_pred HHHHhhcCCC
Confidence 6666666665
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.8e-09 Score=92.52 Aligned_cols=126 Identities=17% Similarity=0.140 Sum_probs=55.3
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhc-cCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhh-
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICK-WFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLC- 321 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~- 321 (581)
..++|.|.+.++.... .+.+. .+.+|++|++++|.++++. .+..+++|+.|++++|.|+.+++.+.
T Consensus 18 ~~~~~~L~L~~n~I~~-----------Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~ 85 (175)
T PF14580_consen 18 PVKLRELNLRGNQIST-----------IENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDK 85 (175)
T ss_dssp -----------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHH
T ss_pred cccccccccccccccc-----------ccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHH
Confidence 5567888888887744 23344 5789999999999999876 68889999999999999999987664
Q ss_pred cccCCcEEEecCCcccccc--hhhhcCCCCcEeecCCcccCCCCCC----ccCCCCCCcEeceecCC
Q 035853 322 NLLSLHTLDMRWSYIHHTP--DEIWKMNELRHLNFGSITLPAHPGK----CCSSLENLNFISVLHPS 382 (581)
Q Consensus 322 ~L~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~----~i~~l~~L~~L~l~~~~ 382 (581)
.+++|++|++++|.+..+. ..+..+++|++|++.+|.+... +. .+..+++|+.|+...+.
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTEETT
T ss_pred hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCEEcc
Confidence 6999999999999776654 3467899999999999988632 21 25667888888866655
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.2e-10 Score=108.53 Aligned_cols=79 Identities=18% Similarity=0.161 Sum_probs=34.7
Q ss_pred CcEEEecCCcc--cccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC----CcchhhhCCCCCCCeEE
Q 035853 326 LHTLDMRWSYI--HHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS----SCTQDILGRLPSLQTFR 399 (581)
Q Consensus 326 L~~L~l~~~~l--~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~----~~~~~~l~~l~~L~~L~ 399 (581)
||+|||+...+ ..+..-+..+.+|+.|.+.++.+...+...+.+-.+|+.|+++.|+ ....-.+.+|+.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 44444544433 1222223445555555555544443333334444444444444444 11112234555555555
Q ss_pred Eeeec
Q 035853 400 VHENL 404 (581)
Q Consensus 400 l~~~~ 404 (581)
+++|.
T Consensus 267 lsWc~ 271 (419)
T KOG2120|consen 267 LSWCF 271 (419)
T ss_pred chHhh
Confidence 55554
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.3e-09 Score=103.97 Aligned_cols=231 Identities=19% Similarity=0.152 Sum_probs=131.2
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCccc---c-cCCC-------cccCcCCCcEEeccCCC
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVL---D-EYPA-------GINPLLLLKYLVLNIPS 312 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l---~-~lp~-------~i~~l~~Lr~L~L~~~~ 312 (581)
+..+..+.++++....-.- ... .+.+.+-+.||.-++++--. . .+|. .+-.+++|++|+||.|-
T Consensus 29 ~~s~~~l~lsgnt~G~EAa--~~i---~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAA--RAI---AKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred cCceEEEeccCCchhHHHH--HHH---HHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 7889999999988753110 223 57788888999999987542 1 4443 33457799999999998
Q ss_pred Cc-c----cChhhhcccCCcEEEecCCcccccchh--------------hhcCCCCcEeecCCcccCCC----CCCccCC
Q 035853 313 LK-H----LPSSLCNLLSLHTLDMRWSYIHHTPDE--------------IWKMNELRHLNFGSITLPAH----PGKCCSS 369 (581)
Q Consensus 313 i~-~----lp~~i~~L~~L~~L~l~~~~l~~lp~~--------------i~~l~~L~~L~l~~~~~~~~----~p~~i~~ 369 (581)
+. . +-.-+..+..|+.|.|.+|.+...... +..-++||++..+.|++... +...+..
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~ 183 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQS 183 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHh
Confidence 76 2 223466789999999999977543221 23345566666666655321 1112333
Q ss_pred CCCCcEeceecCC------CcchhhhCCCCCCCeEEEeeec--ccchhchhhhcCCCCCCCEEEeecCCcccCCcccccC
Q 035853 370 LENLNFISVLHPS------SCTQDILGRLPSLQTFRVHENL--SSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVL 441 (581)
Q Consensus 370 l~~L~~L~l~~~~------~~~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l~l 441 (581)
.+.|+.+.+..++ ......+.++++|+.|++..|. .....++...
T Consensus 184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka--------------------------- 236 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA--------------------------- 236 (382)
T ss_pred ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH---------------------------
Confidence 3444444444443 1122334444555555554443 1111122222
Q ss_pred CCCCCCCCccEEEEeeccCCCCCcccc-----cCCCCCCeEEEecCcccCce---eeeCCCCCCCCcEEEecCCC
Q 035853 442 PEYQFPPRLIELSLSNTELKYDPMPAL-----EKLPHLRVLKLKKNSFFGRK---LVCSSGGFPSLKVMHLKSMF 508 (581)
Q Consensus 442 p~~~~l~~L~~L~L~~~~l~~~~~~~l-----~~l~~L~~L~L~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~ 508 (581)
+..+++|+.|.++.|.+.......+ ...|+|++|.+.+|.++.+. +.......|.|+.|+|++|.
T Consensus 237 --L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 237 --LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred --hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 3344566666666666554332222 23577777777777654332 11223346777777777764
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.3e-10 Score=108.29 Aligned_cols=181 Identities=17% Similarity=0.154 Sum_probs=111.3
Q ss_pred CCcEeecCCcccCC-CCCCccCCCCCCcEeceecCC--CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEE
Q 035853 348 ELRHLNFGSITLPA-HPGKCCSSLENLNFISVLHPS--SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESL 424 (581)
Q Consensus 348 ~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L 424 (581)
+|++||++...++. .+..-+..+..|+.|.+.+.. ..+...+..-.+|+.|+++.|......++.-.+.+++.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 58888888776653 222234566777888877776 566677777788888888888733344445556777888888
Q ss_pred EeecCCcccCCcccc-cCC-CCC-CCCCccEEEEeecc--CCCCCccc-ccCCCCCCeEEEecCcccCceeeeCCCCCCC
Q 035853 425 KLVDERTIALQPSSI-VLP-EYQ-FPPRLIELSLSNTE--LKYDPMPA-LEKLPHLRVLKLKKNSFFGRKLVCSSGGFPS 498 (581)
Q Consensus 425 ~l~~~~~i~L~~l~l-~lp-~~~-~l~~L~~L~L~~~~--l~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~ 498 (581)
+++|++.+ - .+. .+. --++|+.|+|++|. +....... ...+|+|..|+|++|..........+..|+.
T Consensus 266 NlsWc~l~------~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~ 339 (419)
T KOG2120|consen 266 NLSWCFLF------TEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNY 339 (419)
T ss_pred CchHhhcc------chhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcch
Confidence 88885511 0 111 111 13577778887773 22223333 2457888888887765433332334556777
Q ss_pred CcEEEecCCCccc-ccccCcccccccceEeeccCcCC
Q 035853 499 LKVMHLKSMFWLE-EWTMENDAMPKLESLIINPCAYL 534 (581)
Q Consensus 499 L~~L~l~~~~~l~-~l~~~~~~l~~L~~L~l~~c~~l 534 (581)
|++|.++.|-.+. +--..+..+|+|.+|++.+|-.-
T Consensus 340 L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 340 LQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred heeeehhhhcCCChHHeeeeccCcceEEEEeccccCc
Confidence 7777777775443 12234567777777777777533
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=8.7e-08 Score=104.59 Aligned_cols=88 Identities=25% Similarity=0.353 Sum_probs=41.6
Q ss_pred eeEEEecCcccc-cCCCcccCcCCCcEEeccCCCCc-ccChhhhcccCCcEEEecCCcc-cccchhhhcCCCCcEeecCC
Q 035853 280 LRLLDLGTIVLD-EYPAGINPLLLLKYLVLNIPSLK-HLPSSLCNLLSLHTLDMRWSYI-HHTPDEIWKMNELRHLNFGS 356 (581)
Q Consensus 280 Lr~L~L~~~~l~-~lp~~i~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~l-~~lp~~i~~l~~L~~L~l~~ 356 (581)
++.|+|+++.+. .+|..++.+++|++|+|++|.+. .+|..++.+++|+.|+|++|.+ ..+|..++++++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 444444444444 44444444444555555444444 4444444444455555444433 23444444444444554444
Q ss_pred cccCCCCCCcc
Q 035853 357 ITLPAHPGKCC 367 (581)
Q Consensus 357 ~~~~~~~p~~i 367 (581)
|.+.+.+|..+
T Consensus 500 N~l~g~iP~~l 510 (623)
T PLN03150 500 NSLSGRVPAAL 510 (623)
T ss_pred CcccccCChHH
Confidence 44444444443
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1e-08 Score=95.82 Aligned_cols=122 Identities=19% Similarity=0.248 Sum_probs=61.2
Q ss_pred ceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcc
Q 035853 279 FLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSIT 358 (581)
Q Consensus 279 ~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~ 358 (581)
.|..|||++|.++.+-.++.-.+.+|.|+++.|++..+- .+..|++|+.|||++|.+.++-..-.++-+.+.|.+++|.
T Consensus 285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~ 363 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNK 363 (490)
T ss_pred hhhhccccccchhhhhhhhhhccceeEEeccccceeeeh-hhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhh
Confidence 455555555555555555555555555555555555443 2455555555555555444443333345555555555554
Q ss_pred cCCCCCCccCCCCCCcEeceecCC---CcchhhhCCCCCCCeEEEeee
Q 035853 359 LPAHPGKCCSSLENLNFISVLHPS---SCTQDILGRLPSLQTFRVHEN 403 (581)
Q Consensus 359 ~~~~~p~~i~~l~~L~~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~ 403 (581)
+. .-.+++++-+|..|++.++. ..-...+++++.|+.+.+.++
T Consensus 364 iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 364 IE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred Hh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCC
Confidence 42 12244455555555555544 223334555555555555444
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.2e-07 Score=66.62 Aligned_cols=56 Identities=29% Similarity=0.394 Sum_probs=25.6
Q ss_pred CCcEEeccCCCCcccC-hhhhcccCCcEEEecCCcccccch-hhhcCCCCcEeecCCc
Q 035853 302 LLKYLVLNIPSLKHLP-SSLCNLLSLHTLDMRWSYIHHTPD-EIWKMNELRHLNFGSI 357 (581)
Q Consensus 302 ~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~ 357 (581)
+|++|++++|.++.+| ..+..+++|++|++++|.+..+|. .+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3444444444444444 233444444444444444444443 2344555555554444
|
... |
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.6e-07 Score=67.01 Aligned_cols=59 Identities=31% Similarity=0.372 Sum_probs=50.5
Q ss_pred CceeEEEecCcccccCC-CcccCcCCCcEEeccCCCCcccC-hhhhcccCCcEEEecCCcc
Q 035853 278 KFLRLLDLGTIVLDEYP-AGINPLLLLKYLVLNIPSLKHLP-SSLCNLLSLHTLDMRWSYI 336 (581)
Q Consensus 278 ~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~l 336 (581)
++|++|++++|+++.+| ..+..+++|++|++++|.++.+| ..+..+++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 57899999999999777 46788999999999999999776 4678999999999998854
|
... |
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.2e-07 Score=97.47 Aligned_cols=101 Identities=17% Similarity=0.270 Sum_probs=68.0
Q ss_pred CcEEeccCCCCc-ccChhhhcccCCcEEEecCCcc-cccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceec
Q 035853 303 LKYLVLNIPSLK-HLPSSLCNLLSLHTLDMRWSYI-HHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLH 380 (581)
Q Consensus 303 Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~l-~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~ 380 (581)
++.|+|+++.+. .+|..++++++|+.|+|++|.+ ..+|..++.+++|+.|++++|.+.+.+|..++++++|+.|++.+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 566777777766 6777777777777777777755 36777777777777777777777777777777777777777766
Q ss_pred CC--CcchhhhCCC-CCCCeEEEeee
Q 035853 381 PS--SCTQDILGRL-PSLQTFRVHEN 403 (581)
Q Consensus 381 ~~--~~~~~~l~~l-~~L~~L~l~~~ 403 (581)
+. +.+|..++.+ .++..+++.++
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CcccccCChHHhhccccCceEEecCC
Confidence 65 4555555432 24445555554
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.1e-08 Score=97.98 Aligned_cols=255 Identities=18% Similarity=0.120 Sum_probs=147.0
Q ss_pred CCcEEeccCCC---CcccChhhhcccCCcEEEecCC-cccccc-hhh-hcCCCCcEeecCCcccCC-C-CCCccCCCCCC
Q 035853 302 LLKYLVLNIPS---LKHLPSSLCNLLSLHTLDMRWS-YIHHTP-DEI-WKMNELRHLNFGSITLPA-H-PGKCCSSLENL 373 (581)
Q Consensus 302 ~Lr~L~L~~~~---i~~lp~~i~~L~~L~~L~l~~~-~l~~lp-~~i-~~l~~L~~L~l~~~~~~~-~-~p~~i~~l~~L 373 (581)
.||.|.++++. ...+-....++++++.|.+.+| ++++-- ..+ ..+++|++|++..|.... . +......+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 34555555543 1133333445666666666666 332211 112 346667777666643321 1 11122345666
Q ss_pred cEeceecCC----CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC-C--CC
Q 035853 374 NFISVLHPS----SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP-E--YQ 445 (581)
Q Consensus 374 ~~L~l~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp-~--~~ 445 (581)
+.|+++.|. ..+-.-...+.+++++...+|.+...+.+...=+.+.-+.++++..+.. + ... | -.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~-------lTD~~~~~i~~ 291 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQ-------LTDEDLWLIAC 291 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcc-------ccchHHHHHhh
Confidence 666666666 1222334456667777777776444444443333444444454333221 1 111 1 12
Q ss_pred CCCCccEEEEeeccCCC-CCcccc-cCCCCCCeEEEecCc-ccCceeeeCCCCCCCCcEEEecCCCcccc--cccCcccc
Q 035853 446 FPPRLIELSLSNTELKY-DPMPAL-EKLPHLRVLKLKKNS-FFGRKLVCSSGGFPSLKVMHLKSMFWLEE--WTMENDAM 520 (581)
Q Consensus 446 ~l~~L~~L~L~~~~l~~-~~~~~l-~~l~~L~~L~L~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~~~~~~l 520 (581)
.+..|+.|+.++|...+ .....+ .+.++|+.|.+.+|. +....+..-..+.+.|+.+++..|..... +-..-.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 57889999999985432 233333 468999999999886 44444444456789999999998854442 33334579
Q ss_pred cccceEeeccCcCCCCC-----cccccCCCCccEEEeeCCCHHHHHHH
Q 035853 521 PKLESLIINPCAYLKIL-----PEELWRIKSLTKLELWWPRFELRETL 563 (581)
Q Consensus 521 ~~L~~L~l~~c~~l~~l-----p~~l~~l~~L~~L~l~~c~~~~~~~~ 563 (581)
|.|+.|.++.|...... ..+-.....|+.+++++||....+.+
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L 419 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL 419 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHH
Confidence 99999999999876543 33344567899999999995443333
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.2e-07 Score=98.91 Aligned_cols=123 Identities=20% Similarity=0.240 Sum_probs=59.4
Q ss_pred ceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcc
Q 035853 279 FLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSIT 358 (581)
Q Consensus 279 ~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~ 358 (581)
.+..+.+..+.+.+.-..++.+++|.+|++.+|.|..+...+..+++|++|++++|.|..+.. +..++.|+.|++++|.
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~ 151 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNL 151 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc-hhhccchhhheeccCc
Confidence 333444444444443333455555555555555555554335555555555555555555532 4445555555555555
Q ss_pred cCCCCCCccCCCCCCcEeceecCC-Ccchhh-hCCCCCCCeEEEeeec
Q 035853 359 LPAHPGKCCSSLENLNFISVLHPS-SCTQDI-LGRLPSLQTFRVHENL 404 (581)
Q Consensus 359 ~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~-l~~l~~L~~L~l~~~~ 404 (581)
+. -..++..+++|+.+++.++. ..+... +..+.+++.+.+.++.
T Consensus 152 i~--~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 152 IS--DISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred ch--hccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence 53 11233345555555555554 111111 3445555555555553
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.4e-07 Score=98.28 Aligned_cols=108 Identities=19% Similarity=0.181 Sum_probs=81.7
Q ss_pred HHhccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcE
Q 035853 272 AICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRH 351 (581)
Q Consensus 272 ~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~ 351 (581)
..+..+++|..|++.++.+..+...+..+++|++|++++|.|+.+. .+..+..|+.|++.+|.+..++. +..+++|+.
T Consensus 89 ~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~ 166 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDISG-LESLKSLKL 166 (414)
T ss_pred cccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCcchhccC-Cccchhhhc
Confidence 3466778888888888888877655778888888888888888775 56777888888888887777654 555888888
Q ss_pred eecCCcccCCCCCCc-cCCCCCCcEeceecCC
Q 035853 352 LNFGSITLPAHPGKC-CSSLENLNFISVLHPS 382 (581)
Q Consensus 352 L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~ 382 (581)
+++++|.+.. +... ...+.+++.+.+.++.
T Consensus 167 l~l~~n~i~~-ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 167 LDLSYNRIVD-IENDELSELISLEELDLGGNS 197 (414)
T ss_pred ccCCcchhhh-hhhhhhhhccchHHHhccCCc
Confidence 8888888763 2221 4677778888877766
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.13 E-value=6.7e-07 Score=83.83 Aligned_cols=78 Identities=23% Similarity=0.246 Sum_probs=40.0
Q ss_pred ceeEEEecCcccccCC--Cccc-CcCCCcEEeccCCCCc---ccChhhhcccCCcEEEecCCcc----cccchhhhcCCC
Q 035853 279 FLRLLDLGTIVLDEYP--AGIN-PLLLLKYLVLNIPSLK---HLPSSLCNLLSLHTLDMRWSYI----HHTPDEIWKMNE 348 (581)
Q Consensus 279 ~Lr~L~L~~~~l~~lp--~~i~-~l~~Lr~L~L~~~~i~---~lp~~i~~L~~L~~L~l~~~~l----~~lp~~i~~l~~ 348 (581)
.+..|.+.++.+...- ..|+ ...+++.|+|.+|.|+ ++-.-+.+++.|++|+++.|.+ +.+| ..+.+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~n 122 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKN 122 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccc
Confidence 3445556666554211 1122 3456667777776665 3333345666666666666633 2333 13445
Q ss_pred CcEeecCCccc
Q 035853 349 LRHLNFGSITL 359 (581)
Q Consensus 349 L~~L~l~~~~~ 359 (581)
|+.|-+.+..+
T Consensus 123 l~~lVLNgT~L 133 (418)
T KOG2982|consen 123 LRVLVLNGTGL 133 (418)
T ss_pred eEEEEEcCCCC
Confidence 66665555444
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.5e-06 Score=56.12 Aligned_cols=39 Identities=31% Similarity=0.359 Sum_probs=21.5
Q ss_pred CCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccc
Q 035853 302 LLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTP 340 (581)
Q Consensus 302 ~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp 340 (581)
+|++|++++|.|+.+|+.+++|++|++|++++|.+..+|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 455666666666665555566666666666666555443
|
... |
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.95 E-value=3.4e-06 Score=79.24 Aligned_cols=224 Identities=17% Similarity=0.214 Sum_probs=122.2
Q ss_pred CCCcEEeccCCCCcccC--hhh-hcccCCcEEEecCCcccc---cchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCc
Q 035853 301 LLLKYLVLNIPSLKHLP--SSL-CNLLSLHTLDMRWSYIHH---TPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLN 374 (581)
Q Consensus 301 ~~Lr~L~L~~~~i~~lp--~~i-~~L~~L~~L~l~~~~l~~---lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~ 374 (581)
.-+..|.+.++.|...- ..+ ...++++.|||.+|.+.. +-.-+.+||.|+.|+++.|.+...+...-..+.+|+
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence 34556666777665332 222 357889999999997643 334457899999999999987542221112456788
Q ss_pred EeceecCC---CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccccCCCCCCCCCcc
Q 035853 375 FISVLHPS---SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVLPEYQFPPRLI 451 (581)
Q Consensus 375 ~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l~lp~~~~l~~L~ 451 (581)
+|-+.+.. ...-..+..+|.+++|+++.+. ++.+.+..+. . -..-+.++
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~----------------~rq~n~Dd~c--------~----e~~s~~v~ 176 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS----------------LRQLNLDDNC--------I----EDWSTEVL 176 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccch----------------hhhhcccccc--------c----cccchhhh
Confidence 88777766 4455566777777777777663 2222222100 0 00011223
Q ss_pred EEEEeeccCCC--CCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccc--cCcccccccceEe
Q 035853 452 ELSLSNTELKY--DPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWT--MENDAMPKLESLI 527 (581)
Q Consensus 452 ~L~L~~~~l~~--~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~l~~L~~L~ 527 (581)
+|....|.... .....-..+|++..+.+..|.+...........||.+-.|.+..+ ++.+|. ..+..||.|..|.
T Consensus 177 tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlR 255 (418)
T KOG2982|consen 177 TLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLR 255 (418)
T ss_pred hhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheee
Confidence 33333331100 000011124566666666555544433334555666666666654 455553 2355677777777
Q ss_pred eccCcCCCCCcc------cccCCCCccEEEee
Q 035853 528 INPCAYLKILPE------ELWRIKSLTKLELW 553 (581)
Q Consensus 528 l~~c~~l~~lp~------~l~~l~~L~~L~l~ 553 (581)
+.++|....+-. .++++++++.|+=+
T Consensus 256 v~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 256 VSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred ccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 777776544321 35566677666533
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.94 E-value=7.2e-06 Score=55.14 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=34.9
Q ss_pred CceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccC
Q 035853 278 KFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLP 317 (581)
Q Consensus 278 ~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp 317 (581)
++|++|++++|+++.+|..+++|++|++|++++|.++.+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4799999999999999988999999999999999998765
|
... |
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=1.9e-06 Score=90.10 Aligned_cols=98 Identities=18% Similarity=0.233 Sum_probs=63.6
Q ss_pred CcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCC-ccCCCCCCcEeceecC
Q 035853 303 LKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGK-CCSSLENLNFISVLHP 381 (581)
Q Consensus 303 Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~ 381 (581)
|...+.++|.+..+-.++.-++.|+.|||++|++.... .+..+++|+|||+++|.+. .+|. +...+. |+.|.+.++
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN 242 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNN 242 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhc-cccccchhhhh-heeeeeccc
Confidence 44555566666666667777778888888888776665 5777788888888887775 4442 222233 677766666
Q ss_pred CCcchhhhCCCCCCCeEEEeee
Q 035853 382 SSCTQDILGRLPSLQTFRVHEN 403 (581)
Q Consensus 382 ~~~~~~~l~~l~~L~~L~l~~~ 403 (581)
.......+.++.+|+.|+++.|
T Consensus 243 ~l~tL~gie~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 243 ALTTLRGIENLKSLYGLDLSYN 264 (1096)
T ss_pred HHHhhhhHHhhhhhhccchhHh
Confidence 5444455666677777777666
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=2.1e-05 Score=85.98 Aligned_cols=109 Identities=22% Similarity=0.268 Sum_probs=75.4
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccC--hhhh
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLP--SSLC 321 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp--~~i~ 321 (581)
+|.||+|.+.+..... ... ...+.++++|+.||+++++++.+ .++++|++|+.|.+++-.++.-. ..+.
T Consensus 147 LPsL~sL~i~~~~~~~-----~dF---~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF 217 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDN-----DDF---SQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLF 217 (699)
T ss_pred CcccceEEecCceecc-----hhH---HHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHh
Confidence 7888888888766543 222 46677888888888888888766 57888888888888876665322 4566
Q ss_pred cccCCcEEEecCCcccccchhh-------hcCCCCcEeecCCcccCC
Q 035853 322 NLLSLHTLDMRWSYIHHTPDEI-------WKMNELRHLNFGSITLPA 361 (581)
Q Consensus 322 ~L~~L~~L~l~~~~l~~lp~~i-------~~l~~L~~L~l~~~~~~~ 361 (581)
+|++|++||+|.......+.-+ ..||+||.||.+++.+..
T Consensus 218 ~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 218 NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 7888888888877333322111 237788888888776654
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=3.5e-05 Score=77.72 Aligned_cols=134 Identities=19% Similarity=0.167 Sum_probs=82.6
Q ss_pred HhccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCC-CcccChhhhcccCCcEEEecCC-cccccchhhhcCCCCc
Q 035853 273 ICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPS-LKHLPSSLCNLLSLHTLDMRWS-YIHHTPDEIWKMNELR 350 (581)
Q Consensus 273 ~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~-i~~lp~~i~~L~~L~~L~l~~~-~l~~lp~~i~~l~~L~ 350 (581)
-+..+++++.|++++|.++.+| .+. .+|+.|.+++|. ++.+|..+ ..+|+.|++++| .+..+|.. |+
T Consensus 47 r~~~~~~l~~L~Is~c~L~sLP-~LP--~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le 115 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIESLP-VLP--NELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VR 115 (426)
T ss_pred HHHHhcCCCEEEeCCCCCcccC-CCC--CCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cc
Confidence 3555788999999999888887 232 368999998854 66777665 368999999998 78888764 55
Q ss_pred EeecCCccc--CCCCCCccCCCCCCcEeceecCCCcchhhhC-CC-CCCCeEEEeeecccchhchhhhcCCCCCCCEEEe
Q 035853 351 HLNFGSITL--PAHPGKCCSSLENLNFISVLHPSSCTQDILG-RL-PSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKL 426 (581)
Q Consensus 351 ~L~l~~~~~--~~~~p~~i~~l~~L~~L~l~~~~~~~~~~l~-~l-~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l 426 (581)
.|++.++.. .+.+|. +|+.|.+..........+. .+ ++|+.|.+++|. .. .+|..+. .+|+.|.+
T Consensus 116 ~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~--~i-~LP~~LP--~SLk~L~l 184 (426)
T PRK15386 116 SLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNLISPSLKTLSLTGCS--NI-ILPEKLP--ESLQSITL 184 (426)
T ss_pred eEEeCCCCCcccccCcc------hHhheeccccccccccccccccCCcccEEEecCCC--cc-cCccccc--ccCcEEEe
Confidence 666654433 223443 4556654332200001111 12 578888888875 22 2333332 47778877
Q ss_pred ec
Q 035853 427 VD 428 (581)
Q Consensus 427 ~~ 428 (581)
+.
T Consensus 185 s~ 186 (426)
T PRK15386 185 HI 186 (426)
T ss_pred cc
Confidence 65
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.79 E-value=4.5e-06 Score=77.43 Aligned_cols=251 Identities=19% Similarity=0.155 Sum_probs=147.0
Q ss_pred HHHhccCCceeEEEecCcccc-----cCCCcccCcCCCcEEeccCCC---Cc-ccCh-------hhhcccCCcEEEecCC
Q 035853 271 NAICKWFKFLRLLDLGTIVLD-----EYPAGINPLLLLKYLVLNIPS---LK-HLPS-------SLCNLLSLHTLDMRWS 334 (581)
Q Consensus 271 ~~~~~~~~~Lr~L~L~~~~l~-----~lp~~i~~l~~Lr~L~L~~~~---i~-~lp~-------~i~~L~~L~~L~l~~~ 334 (581)
...+..+..+..++|+||.+. .+...|.+-++|+..+++.-- .. ++|+ .+-+|++|++.+|+.|
T Consensus 23 ~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN 102 (388)
T COG5238 23 VEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN 102 (388)
T ss_pred HHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence 345556888999999999876 344566677889988888632 11 3443 3457788888888888
Q ss_pred cc-cccc----hhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCCCcchhhhCCCCCCCeEEEeeec--ccc
Q 035853 335 YI-HHTP----DEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPSSCTQDILGRLPSLQTFRVHENL--SSY 407 (581)
Q Consensus 335 ~l-~~lp----~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~ 407 (581)
.+ .+.| +.|++-+.|.||.+++|.+...--..|+ +.|++|. .-....+-|.|+...+..+. +..
T Consensus 103 Afg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rig--kal~~la-------~nKKaa~kp~Le~vicgrNRlengs 173 (388)
T COG5238 103 AFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIG--KALFHLA-------YNKKAADKPKLEVVICGRNRLENGS 173 (388)
T ss_pred ccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHH--HHHHHHH-------HHhhhccCCCceEEEeccchhccCc
Confidence 33 2233 3456777788888877755311111121 1122221 11223455667777776665 112
Q ss_pred hhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC--CCCCCCCccEEEEeeccCCCCCcc----cccCCCCCCeEEEe
Q 035853 408 QSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP--EYQFPPRLIELSLSNTELKYDPMP----ALEKLPHLRVLKLK 480 (581)
Q Consensus 408 ~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp--~~~~l~~L~~L~L~~~~l~~~~~~----~l~~l~~L~~L~L~ 480 (581)
.......+..-.+|+.+.+..++ +++-.+ .+- .+..+.+|+.|+|+.|.++..... .+...+.|+.|.+.
T Consensus 174 ~~~~a~~l~sh~~lk~vki~qNg---Irpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ln 250 (388)
T COG5238 174 KELSAALLESHENLKEVKIQQNG---IRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLN 250 (388)
T ss_pred HHHHHHHHHhhcCceeEEeeecC---cCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcccc
Confidence 22222334444577777777655 000001 111 234678899999999877654333 24456778999998
Q ss_pred cCcccCceee-----eCCCCCCCCcEEEecCCCcccc------cc-cCcccccccceEeeccCcC
Q 035853 481 KNSFFGRKLV-----CSSGGFPSLKVMHLKSMFWLEE------WT-MENDAMPKLESLIINPCAY 533 (581)
Q Consensus 481 ~~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~l~~------l~-~~~~~l~~L~~L~l~~c~~ 533 (581)
+|-+...... +.-..+|+|..|...++..-.. ++ ...+++|-|..|.+.+|..
T Consensus 251 DClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~ 315 (388)
T COG5238 251 DCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI 315 (388)
T ss_pred chhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence 7766544321 1223478888888877643221 11 2346789999999888864
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=7e-06 Score=89.64 Aligned_cols=109 Identities=17% Similarity=0.140 Sum_probs=79.3
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccc--cCCCcccCcCCCcEEeccCCCCcccChhhh
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLD--EYPAGINPLLLLKYLVLNIPSLKHLPSSLC 321 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~--~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~ 321 (581)
..+|+.|.+.|.... ...| + ...-..+|.||.|.+.+-.+. .+..-..++++|+.||+++++++.+ ..++
T Consensus 121 r~nL~~LdI~G~~~~-s~~W---~---~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS 192 (699)
T KOG3665|consen 121 RQNLQHLDISGSELF-SNGW---P---KKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGIS 192 (699)
T ss_pred HHhhhhcCccccchh-hccH---H---HHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHh
Confidence 678888888875543 3344 2 355567888888888887754 3334455778899999999888877 6888
Q ss_pred cccCCcEEEecCCcccccc--hhhhcCCCCcEeecCCcccC
Q 035853 322 NLLSLHTLDMRWSYIHHTP--DEIWKMNELRHLNFGSITLP 360 (581)
Q Consensus 322 ~L~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~ 360 (581)
+|++||+|.+++-.+..-+ ..+.+|++|++||+|.....
T Consensus 193 ~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 193 RLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN 233 (699)
T ss_pred ccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence 9999999888776554433 34678889999988876554
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=1e-06 Score=91.93 Aligned_cols=109 Identities=20% Similarity=0.209 Sum_probs=78.2
Q ss_pred HHHhccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChh-hhcccCCcEEEecCCcccccchhhhcCCCC
Q 035853 271 NAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSS-LCNLLSLHTLDMRWSYIHHTPDEIWKMNEL 349 (581)
Q Consensus 271 ~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L 349 (581)
...+.-++.|+.|+|++|++.++- .+..|++|+.|||++|.+..+|.- ...+. |+.|++++|.++++- +|.+|.+|
T Consensus 180 D~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~-gie~LksL 256 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLR-GIENLKSL 256 (1096)
T ss_pred HHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhh-hHHhhhhh
Confidence 456666778888888888877554 677788888888888888777632 22333 888888888777774 47888888
Q ss_pred cEeecCCcccCCCCC-CccCCCCCCcEeceecCC
Q 035853 350 RHLNFGSITLPAHPG-KCCSSLENLNFISVLHPS 382 (581)
Q Consensus 350 ~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~ 382 (581)
++||+++|.+.+.-- ..++.|..|..|++.++.
T Consensus 257 ~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 257 YGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 888888887764211 235566777788877776
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=4.3e-06 Score=89.34 Aligned_cols=188 Identities=22% Similarity=0.142 Sum_probs=92.4
Q ss_pred CCCCcEeecCCcc-cCCCCCCcc-CCCCCCcEeceecCC----CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCC
Q 035853 346 MNELRHLNFGSIT-LPAHPGKCC-SSLENLNFISVLHPS----SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLL 419 (581)
Q Consensus 346 l~~L~~L~l~~~~-~~~~~p~~i-~~l~~L~~L~l~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~ 419 (581)
+.+|++|+++++. +....-..+ ..+++|++|.+..|. ..+......+++|++|++++|.......+.....+++
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~ 321 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCP 321 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCc
Confidence 4555555555554 221111111 124556666544444 2334445567778888888876322333444455566
Q ss_pred CCCEEEeecCCcccCCcccccCCCCCCCCCccEEEEeeccCCC---CCcccccCCCCCCeEEEecCcccCceeeeCCCCC
Q 035853 420 HLESLKLVDERTIALQPSSIVLPEYQFPPRLIELSLSNTELKY---DPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGF 496 (581)
Q Consensus 420 ~L~~L~l~~~~~i~L~~l~l~lp~~~~l~~L~~L~L~~~~l~~---~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 496 (581)
+|+.|.+.. ...++.++.+.+..+.... ...-....+++++.+.+..+.......
T Consensus 322 ~l~~l~~~~---------------~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~------- 379 (482)
T KOG1947|consen 322 NLRELKLLS---------------LNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGL------- 379 (482)
T ss_pred chhhhhhhh---------------cCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcch-------
Confidence 666666554 2235556666665553211 112235567777777777655222221
Q ss_pred CCCcEEEecCCCcc-cccccCcccccccceEeeccCcCCCCCc-ccccC-CCCccEEEeeCCCHHH
Q 035853 497 PSLKVMHLKSMFWL-EEWTMENDAMPKLESLIINPCAYLKILP-EELWR-IKSLTKLELWWPRFEL 559 (581)
Q Consensus 497 ~~L~~L~l~~~~~l-~~l~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~-l~~L~~L~l~~c~~~~ 559 (581)
.+.+.+|+.+ ..+.......+.++.|.+..|.....-- ..... +.+++.+.+.+|+...
T Consensus 380 ----~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 380 ----ELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVIT 441 (482)
T ss_pred ----HHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCccccc
Confidence 2233333333 2222222333337777777776543211 11111 5566777777776433
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00011 Score=74.13 Aligned_cols=135 Identities=14% Similarity=0.141 Sum_probs=87.2
Q ss_pred cCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCC-cccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEe
Q 035853 298 NPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWS-YIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFI 376 (581)
Q Consensus 298 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 376 (581)
..+.++++|++++|.++.+|. -..+|++|.+++| .+..+|..+. ++|++|++++|.....+|. +|+.|
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe~L 117 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVRSL 117 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccceE
Confidence 346899999999999999982 2457999999998 8888887653 5899999999854445664 45666
Q ss_pred ceecCCCcchhhhCCC-CCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC-CCCCCCCccEE
Q 035853 377 SVLHPSSCTQDILGRL-PSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP-EYQFPPRLIEL 453 (581)
Q Consensus 377 ~l~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp-~~~~l~~L~~L 453 (581)
.+...... .+..+ ++|+.|.+.+.........+.. -.++|+.|.++++. . .+| .+ ..+|+.|
T Consensus 118 ~L~~n~~~---~L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~--------~i~LP~~L--P~SLk~L 182 (426)
T PRK15386 118 EIKGSATD---SIKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCS--------NIILPEKL--PESLQSI 182 (426)
T ss_pred EeCCCCCc---ccccCcchHhheeccccccccccccccc--cCCcccEEEecCCC--------cccCcccc--cccCcEE
Confidence 65443311 12223 3567777754320011111111 12589999998854 2 344 33 2688899
Q ss_pred EEeec
Q 035853 454 SLSNT 458 (581)
Q Consensus 454 ~L~~~ 458 (581)
+++.+
T Consensus 183 ~ls~n 187 (426)
T PRK15386 183 TLHIE 187 (426)
T ss_pred Eeccc
Confidence 88765
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=3.2e-06 Score=70.35 Aligned_cols=101 Identities=22% Similarity=0.247 Sum_probs=58.6
Q ss_pred ceeEEEecCcccc---cCCCcccCcCCCcEEeccCCCCcccChhhhc-ccCCcEEEecCCcccccchhhhcCCCCcEeec
Q 035853 279 FLRLLDLGTIVLD---EYPAGINPLLLLKYLVLNIPSLKHLPSSLCN-LLSLHTLDMRWSYIHHTPDEIWKMNELRHLNF 354 (581)
Q Consensus 279 ~Lr~L~L~~~~l~---~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~-L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 354 (581)
.+-.++|++|.+. ..+..+....+|...+|++|.++..|+.+.. .+.+++|++.+|.+.++|..+..++.||.|++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 3445666666544 2233344455666666666666666665543 34666666666666666666666666666666
Q ss_pred CCcccCCCCCCccCCCCCCcEeceec
Q 035853 355 GSITLPAHPGKCCSSLENLNFISVLH 380 (581)
Q Consensus 355 ~~~~~~~~~p~~i~~l~~L~~L~l~~ 380 (581)
+.|.+. ..|..+..|.+|-.|+...
T Consensus 108 ~~N~l~-~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 108 RFNPLN-AEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred ccCccc-cchHHHHHHHhHHHhcCCC
Confidence 666654 4555554455555554333
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.48 E-value=1.9e-05 Score=73.42 Aligned_cols=230 Identities=16% Similarity=0.085 Sum_probs=133.8
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccc----cCC-------CcccCcCCCcEEeccCCC
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLD----EYP-------AGINPLLLLKYLVLNIPS 312 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~----~lp-------~~i~~l~~Lr~L~L~~~~ 312 (581)
+..+..+.++++...+ ...+.-...+.+-++|++.+++.-... .+| +.+-+|++|+..+|+.|.
T Consensus 29 ~d~~~evdLSGNtigt-----EA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 29 MDELVEVDLSGNTIGT-----EAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred hcceeEEeccCCcccH-----HHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 7889999999998754 111111456677889999998875422 333 345579999999999998
Q ss_pred Cc-ccChh----hhcccCCcEEEecCCcccccchh--------------hhcCCCCcEeecCCcccCCCCCC-----ccC
Q 035853 313 LK-HLPSS----LCNLLSLHTLDMRWSYIHHTPDE--------------IWKMNELRHLNFGSITLPAHPGK-----CCS 368 (581)
Q Consensus 313 i~-~lp~~----i~~L~~L~~L~l~~~~l~~lp~~--------------i~~l~~L~~L~l~~~~~~~~~p~-----~i~ 368 (581)
+. ..|+. |+.-..|.+|.+++|.++.+..+ ...-|.|+....+.|++.. .|. .+.
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~ 182 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLE 182 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHH
Confidence 87 55544 56778999999999977554321 2235667777777776642 111 112
Q ss_pred CCCCCcEeceecCC--Cc-----chhhhCCCCCCCeEEEeeec--ccchhchhhhcCCCCCCCEEEeecCCcccCCcccc
Q 035853 369 SLENLNFISVLHPS--SC-----TQDILGRLPSLQTFRVHENL--SSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI 439 (581)
Q Consensus 369 ~l~~L~~L~l~~~~--~~-----~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l 439 (581)
.-.+|+++.+..+. .. ....+..+.+|+.|++..+. ......+...++.
T Consensus 183 sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~---------------------- 240 (388)
T COG5238 183 SHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCE---------------------- 240 (388)
T ss_pred hhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcc----------------------
Confidence 22345555555444 11 11233445555555555553 0111112222222
Q ss_pred cCCCCCCCCCccEEEEeeccCCCCCccc----cc--CCCCCCeEEEecCcccCceeee------CCCCCCCCcEEEecCC
Q 035853 440 VLPEYQFPPRLIELSLSNTELKYDPMPA----LE--KLPHLRVLKLKKNSFFGRKLVC------SSGGFPSLKVMHLKSM 507 (581)
Q Consensus 440 ~lp~~~~l~~L~~L~L~~~~l~~~~~~~----l~--~l~~L~~L~L~~~~~~~~~~~~------~~~~~~~L~~L~l~~~ 507 (581)
| +.|+.|.+..|-++...... +. ..|+|..|...+|...+..+.. ..+.+|-|..|.+.+|
T Consensus 241 ---W----~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngN 313 (388)
T COG5238 241 ---W----NLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGN 313 (388)
T ss_pred ---c----chhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccC
Confidence 2 33666667777554433222 22 2577788877777655443322 2356777888887776
Q ss_pred C
Q 035853 508 F 508 (581)
Q Consensus 508 ~ 508 (581)
.
T Consensus 314 r 314 (388)
T COG5238 314 R 314 (388)
T ss_pred c
Confidence 3
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=1.8e-05 Score=66.00 Aligned_cols=89 Identities=16% Similarity=0.184 Sum_probs=69.7
Q ss_pred HHhccCCceeEEEecCcccccCCCcccC-cCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCc
Q 035853 272 AICKWFKFLRLLDLGTIVLDEYPAGINP-LLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELR 350 (581)
Q Consensus 272 ~~~~~~~~Lr~L~L~~~~l~~lp~~i~~-l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~ 350 (581)
..+.+...|...+|++|.++++|+.+.. .+.++.|++++|.|..+|.++..++.|+.|+++.|.+...|.-+..|.+|-
T Consensus 47 y~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 47 YMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLD 126 (177)
T ss_pred HHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHH
Confidence 4566677788888888888888876654 347888888888888888888888888888888888888888787788888
Q ss_pred EeecCCcccC
Q 035853 351 HLNFGSITLP 360 (581)
Q Consensus 351 ~L~l~~~~~~ 360 (581)
.|+.-+|...
T Consensus 127 ~Lds~~na~~ 136 (177)
T KOG4579|consen 127 MLDSPENARA 136 (177)
T ss_pred HhcCCCCccc
Confidence 8877666554
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00043 Score=61.93 Aligned_cols=78 Identities=22% Similarity=0.245 Sum_probs=45.0
Q ss_pred eEEEecCcccccCCCccc-CcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhc-CCCCcEeecCCcc
Q 035853 281 RLLDLGTIVLDEYPAGIN-PLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWK-MNELRHLNFGSIT 358 (581)
Q Consensus 281 r~L~L~~~~l~~lp~~i~-~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~-l~~L~~L~l~~~~ 358 (581)
+.++|.+.++...-. ++ -+.+...++|++|.+..++ .+..++.|.+|.+.+|.+..+...+.. +++|..|.+.+|.
T Consensus 22 ~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 22 RELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred cccccccccccchhh-ccccccccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence 455555555432211 11 1234556777777766554 455667777777777777666555543 5567777777666
Q ss_pred cC
Q 035853 359 LP 360 (581)
Q Consensus 359 ~~ 360 (581)
+.
T Consensus 100 i~ 101 (233)
T KOG1644|consen 100 IQ 101 (233)
T ss_pred hh
Confidence 54
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00061 Score=60.95 Aligned_cols=103 Identities=18% Similarity=0.155 Sum_probs=69.3
Q ss_pred ceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhc-ccCCcEEEecCCcccccch--hhhcCCCCcEeecC
Q 035853 279 FLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCN-LLSLHTLDMRWSYIHHTPD--EIWKMNELRHLNFG 355 (581)
Q Consensus 279 ~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~-L~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~ 355 (581)
..-.+||++|.+..++ .+..++.|..|.+++|+|+.+-+.+.. +++|++|.+.+|++.++-+ .+..+++|++|.+-
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 4567888888876554 466788888888888888877666654 5678888888887665542 25567888888777
Q ss_pred CcccCCCCC---CccCCCCCCcEeceecCC
Q 035853 356 SITLPAHPG---KCCSSLENLNFISVLHPS 382 (581)
Q Consensus 356 ~~~~~~~~p---~~i~~l~~L~~L~l~~~~ 382 (581)
+|.....-- ..+..+++|++|+...+.
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhhhh
Confidence 776543111 124455566666655544
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.02 E-value=4.7e-05 Score=81.35 Aligned_cols=217 Identities=21% Similarity=0.120 Sum_probs=103.5
Q ss_pred ccCCcEEEecCC-cccc--cchhhhcCCCCcEeecCCc-ccCCCC----CCccCCCCCCcEeceecCC---CcchhhhC-
Q 035853 323 LLSLHTLDMRWS-YIHH--TPDEIWKMNELRHLNFGSI-TLPAHP----GKCCSSLENLNFISVLHPS---SCTQDILG- 390 (581)
Q Consensus 323 L~~L~~L~l~~~-~l~~--lp~~i~~l~~L~~L~l~~~-~~~~~~----p~~i~~l~~L~~L~l~~~~---~~~~~~l~- 390 (581)
+++|+.|.+..| .+.. +-.....+++|+.|+++++ ...... ......+.+|+.|++..+. ......+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 566666666666 4443 2233455666777766652 111111 1123345677777777765 22233333
Q ss_pred CCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC-CCCCCCCccEEEEeeccCCCCCcccc
Q 035853 391 RLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP-EYQFPPRLIELSLSNTELKYDPMPAL 468 (581)
Q Consensus 391 ~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp-~~~~l~~L~~L~L~~~~l~~~~~~~l 468 (581)
.+++|+.|.+.+|.......+......+++|++|+++++..+ .- .+. ....+++|+.|.+..+.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~-----~d~~l~~~~~~c~~l~~l~~~~~~--------- 332 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL-----TDSGLEALLKNCPNLRELKLLSLN--------- 332 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc-----hHHHHHHHHHhCcchhhhhhhhcC---------
Confidence 377888888776752233344444455666666666653210 00 011 11224444443332221
Q ss_pred cCCCCCCeEEEecCcccC--ceeeeCCCCCCCCcEEEecCCCcccccccCcccccccc-eEeeccCcCC-CCCcccccCC
Q 035853 469 EKLPHLRVLKLKKNSFFG--RKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLE-SLIINPCAYL-KILPEELWRI 544 (581)
Q Consensus 469 ~~l~~L~~L~L~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~-~L~l~~c~~l-~~lp~~l~~l 544 (581)
.++.++.+.+.++.... .........+++|+.+.+..+. . .... .+.+.+|+.+ ..+.......
T Consensus 333 -~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~----------~~~~~~~~l~gc~~l~~~l~~~~~~~ 400 (482)
T KOG1947|consen 333 -GCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-I----------SDLGLELSLRGCPNLTESLELRLCRS 400 (482)
T ss_pred -CCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-c----------cCcchHHHhcCCcccchHHHHHhccC
Confidence 13334444433221111 1112223445555555555543 2 1222 4666677766 3433333344
Q ss_pred CCccEEEeeCCCHHHHHHHhh
Q 035853 545 KSLTKLELWWPRFELRETLRK 565 (581)
Q Consensus 545 ~~L~~L~l~~c~~~~~~~~~~ 565 (581)
.+++.|.+..|.......++.
T Consensus 401 ~~l~~L~l~~~~~~t~~~l~~ 421 (482)
T KOG1947|consen 401 DSLRVLNLSDCRLVTDKGLRC 421 (482)
T ss_pred CccceEecccCccccccchHH
Confidence 448999999998544444433
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0063 Score=70.64 Aligned_cols=169 Identities=11% Similarity=0.049 Sum_probs=105.4
Q ss_pred CceEEEEEEcCCChh--H-HHHHHhhCCCCCCCCEEEEeCCCh--------------------------HHHHHhc-ccc
Q 035853 14 NKRYLIVFEDVISSD--V-WDYIGKALPDHQNGSRVLAMLTCS--------------------------DEIFSLC-RLE 63 (581)
Q Consensus 14 ~kr~LlVLDDv~~~~--~-~~~l~~~~~~~~~gs~iivTtr~~--------------------------~~~~~Lf-~~f 63 (581)
+.+++|||||+...+ . .+.+...++....+-++|||||.. +|+-++| ...
T Consensus 120 ~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~ 199 (903)
T PRK04841 120 HQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRL 199 (903)
T ss_pred CCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhcc
Confidence 678999999996642 2 233443344445567888999871 7777777 433
Q ss_pred cCccccCCCCChh-hHHhhcCCcchhhhhhccc--c-ce--ecccccccc----c---ccc-eeccccCchhhhHHHHhh
Q 035853 64 NGEMIHLDSVPAG-PLRAKYQERPLVFLYYGRN--S-LV--ENMRLTWRI----Q---KWP-LLFSIVELPQHLKLCCLY 129 (581)
Q Consensus 64 ~~~~~~~~~~~~~-~i~~~c~GlPLal~~~g~~--t-~~--~~~~~~~~~----~---~~~-L~~sY~~L~~~lk~cFl~ 129 (581)
+.. .+.+.. ++.+.|+|.|+++..++.. . -. ... .+.+ . ... ..--|+.||++.+..++.
T Consensus 200 ~~~----~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~ 273 (903)
T PRK04841 200 SSP----IEAAESSRLCDDVEGWATALQLIALSARQNNSSLHDS--ARRLAGINASHLSDYLVEEVLDNVDLETRHFLLR 273 (903)
T ss_pred CCC----CCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCchhhh--hHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 321 113445 9999999999999877754 1 00 000 1111 0 111 122378999999999999
Q ss_pred hcccCCCceechHHHHHHHHhcCCCCCChHHHHHHHHHHHHhCCceeeeeccCCCCEeEEEeChHHHHHHHHhc
Q 035853 130 LSAFRDAFEIATKELYQLWIAEGFIPDNSEKTAEEYLEQLISRGFIKVKKRRAGGTIKTCYISFITRGMLVLVA 203 (581)
Q Consensus 130 ~a~Fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~~L~~~~ll~~~~~~~~g~~~~~~mHdli~dl~~~i~ 203 (581)
.|+++ .|+.+ +...-. | .+.+...+++|.+.+++...... .+ ..|+.|++++++.+...
T Consensus 274 ~a~~~---~~~~~-l~~~l~--~------~~~~~~~L~~l~~~~l~~~~~~~-~~--~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 274 CSVLR---SMNDA-LIVRVT--G------EENGQMRLEELERQGLFIQRMDD-SG--EWFRYHPLFASFLRHRC 332 (903)
T ss_pred hcccc---cCCHH-HHHHHc--C------CCcHHHHHHHHHHCCCeeEeecC-CC--CEEehhHHHHHHHHHHH
Confidence 99987 33432 222111 1 12357889999999997543211 11 35788999999988764
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.00062 Score=63.52 Aligned_cols=84 Identities=19% Similarity=0.169 Sum_probs=49.8
Q ss_pred ccCCceeEEEecCcccccCCCcccCcCCCcEEeccCC--CCc-ccChhhhcccCCcEEEecCCcccc---cchhhhcCCC
Q 035853 275 KWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIP--SLK-HLPSSLCNLLSLHTLDMRWSYIHH---TPDEIWKMNE 348 (581)
Q Consensus 275 ~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~--~i~-~lp~~i~~L~~L~~L~l~~~~l~~---lp~~i~~l~~ 348 (581)
-.+..|+.|.+.++.++.+- .+..|++|++|.++.| ++. .++....++++|++|++++|++.. ++ .+..+++
T Consensus 40 d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcc
Confidence 34445555555555554332 3445677777777777 443 555555666777777777775443 22 2455666
Q ss_pred CcEeecCCcccC
Q 035853 349 LRHLNFGSITLP 360 (581)
Q Consensus 349 L~~L~l~~~~~~ 360 (581)
|..|++..|...
T Consensus 118 L~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 118 LKSLDLFNCSVT 129 (260)
T ss_pred hhhhhcccCCcc
Confidence 677777666554
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.00025 Score=66.34 Aligned_cols=98 Identities=19% Similarity=0.189 Sum_probs=61.0
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccC--hhhh
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLP--SSLC 321 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp--~~i~ 321 (581)
..+++.|.+.++...+ ..+..+|+.|+||.|+-|+++.+- .+..|++|+.|+|+.|.|..+- .-+.
T Consensus 18 l~~vkKLNcwg~~L~D-----------Isic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLk 85 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD-----------ISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLK 85 (388)
T ss_pred HHHhhhhcccCCCccH-----------HHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHh
Confidence 3455666666666533 466677888888888877776553 4667777888888777776543 2355
Q ss_pred cccCCcEEEecCC-cccccch-----hhhcCCCCcEee
Q 035853 322 NLLSLHTLDMRWS-YIHHTPD-----EIWKMNELRHLN 353 (581)
Q Consensus 322 ~L~~L~~L~l~~~-~l~~lp~-----~i~~l~~L~~L~ 353 (581)
++++|++|-|..| .-.+-+. -+..|++|+.||
T Consensus 86 nlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 86 NLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 6777777777666 2222221 134566666664
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.0017 Score=60.60 Aligned_cols=108 Identities=19% Similarity=0.159 Sum_probs=65.6
Q ss_pred CCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCC--cc-cccchhhhcCCCCcEeecCCcccCCCCCC---c
Q 035853 293 YPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWS--YI-HHTPDEIWKMNELRHLNFGSITLPAHPGK---C 366 (581)
Q Consensus 293 lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~--~l-~~lp~~i~~l~~L~~L~l~~~~~~~~~p~---~ 366 (581)
+..-.-.+..|.+|++.+..++.+- .+-.|++|++|.++.| .+ ..++.-..++++|++|++++|.+. .+. .
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~p 111 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLRP 111 (260)
T ss_pred cccccccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--cccccch
Confidence 3333344556667777666554332 2336889999999988 33 445555566799999999999884 232 3
Q ss_pred cCCCCCCcEeceecCC-C----cchhhhCCCCCCCeEEEeee
Q 035853 367 CSSLENLNFISVLHPS-S----CTQDILGRLPSLQTFRVHEN 403 (581)
Q Consensus 367 i~~l~~L~~L~l~~~~-~----~~~~~l~~l~~L~~L~l~~~ 403 (581)
...+.+|..|+++.|. . .--..+.-+++|+.|+-...
T Consensus 112 l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 4556667777777776 1 11122334556665554443
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.0003 Score=65.89 Aligned_cols=106 Identities=19% Similarity=0.181 Sum_probs=80.3
Q ss_pred ccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccch--hhhcCCCCcEe
Q 035853 275 KWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPD--EIWKMNELRHL 352 (581)
Q Consensus 275 ~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L 352 (581)
+.+.+.+.|++.||.+..+. -..+++.|++|.|+-|+|+.+. .+..|.+|++|.|+.|.|..+.. .+.++++||.|
T Consensus 16 sdl~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred hHHHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34567788999999987542 2457889999999999999885 68899999999999997766653 46788999999
Q ss_pred ecCCcccCCCCCCc-----cCCCCCCcEeceecCC
Q 035853 353 NFGSITLPAHPGKC-----CSSLENLNFISVLHPS 382 (581)
Q Consensus 353 ~l~~~~~~~~~p~~-----i~~l~~L~~L~l~~~~ 382 (581)
-|..|.-.+.-+.. +.-|++|+.|+-..+.
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~Vt 128 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPVT 128 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhccCcccc
Confidence 88877666544433 4567777777755444
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.0035 Score=34.97 Aligned_cols=17 Identities=47% Similarity=0.651 Sum_probs=6.9
Q ss_pred CcEEeccCCCCcccChh
Q 035853 303 LKYLVLNIPSLKHLPSS 319 (581)
Q Consensus 303 Lr~L~L~~~~i~~lp~~ 319 (581)
|++|++++|.++.+|++
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 34444444444444433
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.015 Score=32.43 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=18.5
Q ss_pred ceeEEEecCcccccCCCcccCc
Q 035853 279 FLRLLDLGTIVLDEYPAGINPL 300 (581)
Q Consensus 279 ~Lr~L~L~~~~l~~lp~~i~~l 300 (581)
+|++|++++|.++.+|.+|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999887653
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.0025 Score=58.36 Aligned_cols=89 Identities=17% Similarity=0.052 Sum_probs=69.1
Q ss_pred HHhccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcE
Q 035853 272 AICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRH 351 (581)
Q Consensus 272 ~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~ 351 (581)
..+..++..++||++.+++..+-..+..+..|..|+++.+.+..+|+.++.+..+..+++..|.....|.+.++.+.+++
T Consensus 36 ~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcch
Confidence 44556677788888888776666667777788888888888888888888888888888888888888888888888888
Q ss_pred eecCCcccC
Q 035853 352 LNFGSITLP 360 (581)
Q Consensus 352 L~l~~~~~~ 360 (581)
+++-++.+.
T Consensus 116 ~e~k~~~~~ 124 (326)
T KOG0473|consen 116 NEQKKTEFF 124 (326)
T ss_pred hhhccCcch
Confidence 877776654
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.0085 Score=53.89 Aligned_cols=34 Identities=18% Similarity=0.401 Sum_probs=16.0
Q ss_pred CccEEEEeeccCCCCCcccccCCCCCCeEEEecC
Q 035853 449 RLIELSLSNTELKYDPMPALEKLPHLRVLKLKKN 482 (581)
Q Consensus 449 ~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~ 482 (581)
.++.++-+++.+......-+.+++.++.|.+.+|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 3444444454444444444444555555555444
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.056 Score=27.90 Aligned_cols=13 Identities=31% Similarity=0.416 Sum_probs=4.2
Q ss_pred CcEEEecCCcccc
Q 035853 326 LHTLDMRWSYIHH 338 (581)
Q Consensus 326 L~~L~l~~~~l~~ 338 (581)
|++|++++|.+.+
T Consensus 3 L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 3 LRTLDLSNNRLTS 15 (17)
T ss_dssp -SEEEETSS--SS
T ss_pred cCEEECCCCCCCC
Confidence 4444444444333
|
... |
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.056 Score=27.92 Aligned_cols=16 Identities=38% Similarity=0.405 Sum_probs=6.4
Q ss_pred CCcEEeccCCCCcccC
Q 035853 302 LLKYLVLNIPSLKHLP 317 (581)
Q Consensus 302 ~Lr~L~L~~~~i~~lp 317 (581)
+|+.|++++|+++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555443
|
... |
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.22 Score=42.18 Aligned_cols=81 Identities=11% Similarity=0.127 Sum_probs=32.9
Q ss_pred HHhccCCceeEEEecCcccccCC-CcccCcCCCcEEeccCCCCcccC-hhhhcccCCcEEEecCCcccccchh-hhcCCC
Q 035853 272 AICKWFKFLRLLDLGTIVLDEYP-AGINPLLLLKYLVLNIPSLKHLP-SSLCNLLSLHTLDMRWSYIHHTPDE-IWKMNE 348 (581)
Q Consensus 272 ~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~ 348 (581)
..|..+.+|+.+.+.. .+..++ ..+..+.+|+.+.+..+ +..++ ..+..+.+|+.+.+.. .+..++.. +..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 4455555666666553 333333 23455555666666553 44433 2344555566666644 33333332 233555
Q ss_pred CcEeecC
Q 035853 349 LRHLNFG 355 (581)
Q Consensus 349 L~~L~l~ 355 (581)
|+.+++.
T Consensus 83 l~~i~~~ 89 (129)
T PF13306_consen 83 LKNIDIP 89 (129)
T ss_dssp ECEEEET
T ss_pred ccccccC
Confidence 6666554
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.011 Score=53.23 Aligned_cols=82 Identities=20% Similarity=0.344 Sum_probs=60.4
Q ss_pred CCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccC--cccccccceEeeccCcCCCCC-cccccCCCCccEE
Q 035853 474 LRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTME--NDAMPKLESLIINPCAYLKIL-PEELWRIKSLTKL 550 (581)
Q Consensus 474 L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~--~~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L 550 (581)
++.++-+++.+..+.+ ..+..+++++.|.+.+|..+..|... -+-.|+|+.|+|++|+.+++- -..+..+++|+.|
T Consensus 103 IeaVDAsds~I~~eGl-e~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGL-EHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred EEEEecCCchHHHHHH-HHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 3455555555544432 23567889999999999999877532 346899999999999988642 2467789999999
Q ss_pred EeeCCC
Q 035853 551 ELWWPR 556 (581)
Q Consensus 551 ~l~~c~ 556 (581)
.+.+-|
T Consensus 182 ~l~~l~ 187 (221)
T KOG3864|consen 182 HLYDLP 187 (221)
T ss_pred HhcCch
Confidence 999877
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=91.55 E-value=0.7 Score=50.81 Aligned_cols=177 Identities=14% Similarity=0.097 Sum_probs=104.1
Q ss_pred HHHHHHHHhc--CceEEEEEEcCCCh---hHHHHHHhhCCCCCCCCEEEEeCCC--------------------------
Q 035853 4 RKTALHDYLR--NKRYLIVFEDVISS---DVWDYIGKALPDHQNGSRVLAMLTC-------------------------- 52 (581)
Q Consensus 4 l~~~l~~~L~--~kr~LlVLDDv~~~---~~~~~l~~~~~~~~~gs~iivTtr~-------------------------- 52 (581)
+...+...|. .+...+||||-.-. .--+.+.--+.....+=..|||||+
T Consensus 116 l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~ 195 (894)
T COG2909 116 LLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFD 195 (894)
T ss_pred HHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCC
Confidence 3344444444 46899999996443 2233444444555567799999998
Q ss_pred hHHHHHhc-ccccCccccCCCCChh-hHHhhcCCcchhhhhhccc-----c------cee---ccccccccc-ccceecc
Q 035853 53 SDEIFSLC-RLENGEMIHLDSVPAG-PLRAKYQERPLVFLYYGRN-----S------LVE---NMRLTWRIQ-KWPLLFS 115 (581)
Q Consensus 53 ~~~~~~Lf-~~f~~~~~~~~~~~~~-~i~~~c~GlPLal~~~g~~-----t------~~~---~~~~~~~~~-~~~L~~s 115 (581)
++|+-++| ..-+.. .+ +.-. .+.+...|-+-|+..++=. + ... +. .++.- -. =
T Consensus 196 ~eE~~~fl~~~~~l~---Ld-~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG~~~~--l~dYL~ee----V 265 (894)
T COG2909 196 TEEAAAFLNDRGSLP---LD-AADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSGAASH--LSDYLVEE----V 265 (894)
T ss_pred hHHHHHHHHHcCCCC---CC-hHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccchHHH--HHHHHHHH----H
Confidence 17888877 432211 11 2222 5666666655555433222 1 000 11 11110 11 2
Q ss_pred ccCchhhhHHHHhhhcccCCCceechHHHHHHHHhcCCCCCChHHHHHHHHHHHHhCCceeeeeccCCCCEeEEEeChHH
Q 035853 116 IVELPQHLKLCCLYLSAFRDAFEIATKELYQLWIAEGFIPDNSEKTAEEYLEQLISRGFIKVKKRRAGGTIKTCYISFIT 195 (581)
Q Consensus 116 Y~~L~~~lk~cFl~~a~Fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~~L~~~~ll~~~~~~~~g~~~~~~mHdli 195 (581)
+|.||+++|.-.+-||+++.= -++|+.... -++-|...+++|.+++++-..-++.+ ..|+.|-+.
T Consensus 266 ld~Lp~~l~~FLl~~svl~~f----~~eL~~~Lt--------g~~ng~amLe~L~~~gLFl~~Ldd~~---~WfryH~LF 330 (894)
T COG2909 266 LDRLPPELRDFLLQTSVLSRF----NDELCNALT--------GEENGQAMLEELERRGLFLQRLDDEG---QWFRYHHLF 330 (894)
T ss_pred HhcCCHHHHHHHHHHHhHHHh----hHHHHHHHh--------cCCcHHHHHHHHHhCCCceeeecCCC---ceeehhHHH
Confidence 578999999988889988642 234444333 23557889999999998775443222 679999999
Q ss_pred HHHHHHhccc
Q 035853 196 RGMLVLVAEF 205 (581)
Q Consensus 196 ~dl~~~i~~~ 205 (581)
.|+-+.--..
T Consensus 331 aeFL~~r~~~ 340 (894)
T COG2909 331 AEFLRQRLQR 340 (894)
T ss_pred HHHHHhhhcc
Confidence 9987755443
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.36 E-value=0.0091 Score=54.76 Aligned_cols=87 Identities=15% Similarity=0.051 Sum_probs=76.2
Q ss_pred CcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCc
Q 035853 295 AGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLN 374 (581)
Q Consensus 295 ~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~ 374 (581)
..|......+.||++.+++..+-..++.+..|..|+++.+.+..+|...+.+..++++++..|... ..|.+.+..+.++
T Consensus 36 ~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 456677888999999999888888899999999999999999999999999999999999888776 7898999999988
Q ss_pred EeceecCC
Q 035853 375 FISVLHPS 382 (581)
Q Consensus 375 ~L~l~~~~ 382 (581)
.++.-++.
T Consensus 115 ~~e~k~~~ 122 (326)
T KOG0473|consen 115 KNEQKKTE 122 (326)
T ss_pred hhhhccCc
Confidence 88766554
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=88.89 E-value=0.37 Score=27.90 Aligned_cols=18 Identities=33% Similarity=0.318 Sum_probs=9.0
Q ss_pred CCCcEEeccCCCCcccCh
Q 035853 301 LLLKYLVLNIPSLKHLPS 318 (581)
Q Consensus 301 ~~Lr~L~L~~~~i~~lp~ 318 (581)
++|++|+|++|.++.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 344555555555555544
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=88.89 E-value=0.37 Score=27.90 Aligned_cols=18 Identities=33% Similarity=0.318 Sum_probs=9.0
Q ss_pred CCCcEEeccCCCCcccCh
Q 035853 301 LLLKYLVLNIPSLKHLPS 318 (581)
Q Consensus 301 ~~Lr~L~L~~~~i~~lp~ 318 (581)
++|++|+|++|.++.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 344555555555555544
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=88.73 E-value=1.1 Score=37.84 Aligned_cols=99 Identities=15% Similarity=0.132 Sum_probs=51.3
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCC-CcccCcCCCcEEeccCCCCcccC-hhhh
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYP-AGINPLLLLKYLVLNIPSLKHLP-SSLC 321 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp-~~i~ 321 (581)
+++++.+.+... .. ... ...|..++.|+.+.+.++ +..++ ..+.++..|+++.+.. .+..++ ..+.
T Consensus 11 ~~~l~~i~~~~~-~~------~I~---~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~ 78 (129)
T PF13306_consen 11 CSNLESITFPNT-IK------KIG---ENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFS 78 (129)
T ss_dssp -TT--EEEETST---------EE----TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred CCCCCEEEECCC-ee------EeC---hhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccc
Confidence 456777776532 21 122 567788888888888774 55444 3466777888888866 454444 3455
Q ss_pred cccCCcEEEecCCcccccchh-hhcCCCCcEeecCC
Q 035853 322 NLLSLHTLDMRWSYIHHTPDE-IWKMNELRHLNFGS 356 (581)
Q Consensus 322 ~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~ 356 (581)
.+.+|+.+++..+ +..++.. +.+. +|+.+.+..
T Consensus 79 ~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 79 NCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp T-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 6888888888654 5555544 3444 777776554
|
|
| >PF13173 AAA_14: AAA domain | Back alignment and domain information |
|---|
Probab=88.47 E-value=0.57 Score=39.83 Aligned_cols=47 Identities=11% Similarity=0.195 Sum_probs=36.9
Q ss_pred HHHHHHhcCceEEEEEEcCCChhHHHHHHhhCCCCCCCCEEEEeCCC
Q 035853 6 TALHDYLRNKRYLIVFEDVISSDVWDYIGKALPDHQNGSRVLAMLTC 52 (581)
Q Consensus 6 ~~l~~~L~~kr~LlVLDDv~~~~~~~~l~~~~~~~~~gs~iivTtr~ 52 (581)
+.+.+....++.+|+||+|....+|......+-+.++..+|++|+.+
T Consensus 52 ~~~~~~~~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~ 98 (128)
T PF13173_consen 52 EYFLELIKPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSS 98 (128)
T ss_pred HHHHHhhccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccc
Confidence 44445544578899999999988888888777766667899999886
|
|
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=88.42 E-value=1.4 Score=42.93 Aligned_cols=83 Identities=8% Similarity=-0.040 Sum_probs=51.3
Q ss_pred cCceEEEEEEcCCCh--hHHHHHHhhCCC---CCCCCEEEEeCCC----------------------------hHHHHHh
Q 035853 13 RNKRYLIVFEDVISS--DVWDYIGKALPD---HQNGSRVLAMLTC----------------------------SDEIFSL 59 (581)
Q Consensus 13 ~~kr~LlVLDDv~~~--~~~~~l~~~~~~---~~~gs~iivTtr~----------------------------~~~~~~L 59 (581)
.+++++||+||+|.. ..++.+...... ....-.|++|... .+|..++
T Consensus 121 ~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~ 200 (269)
T TIGR03015 121 AGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREETREY 200 (269)
T ss_pred CCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHH
Confidence 678999999999986 456666543221 1222244555321 1666666
Q ss_pred c-ccccCcc-ccCCC--CChh-hHHhhcCCcchhhhhhccc
Q 035853 60 C-RLENGEM-IHLDS--VPAG-PLRAKYQERPLVFLYYGRN 95 (581)
Q Consensus 60 f-~~f~~~~-~~~~~--~~~~-~i~~~c~GlPLal~~~g~~ 95 (581)
+ ..+.... ..... .+.. .|++.++|.|..+..++..
T Consensus 201 l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~ 241 (269)
T TIGR03015 201 IEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDR 241 (269)
T ss_pred HHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHH
Confidence 6 4332111 01222 4556 8999999999999888877
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=87.66 E-value=0.5 Score=27.31 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=15.8
Q ss_pred ccCCcEEEecCCcccccchhh
Q 035853 323 LLSLHTLDMRWSYIHHTPDEI 343 (581)
Q Consensus 323 L~~L~~L~l~~~~l~~lp~~i 343 (581)
+.+|++|++++|.+..+|.++
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 457788888888888887764
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=87.66 E-value=0.5 Score=27.31 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=15.8
Q ss_pred ccCCcEEEecCCcccccchhh
Q 035853 323 LLSLHTLDMRWSYIHHTPDEI 343 (581)
Q Consensus 323 L~~L~~L~l~~~~l~~lp~~i 343 (581)
+.+|++|++++|.+..+|.++
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 457788888888888887764
|
|
| >PF05729 NACHT: NACHT domain | Back alignment and domain information |
|---|
Probab=84.46 E-value=0.88 Score=40.25 Aligned_cols=41 Identities=17% Similarity=0.258 Sum_probs=28.0
Q ss_pred cCceEEEEEEcCCChhH---------HHHHH-hhCCC-CCCCCEEEEeCCCh
Q 035853 13 RNKRYLIVFEDVISSDV---------WDYIG-KALPD-HQNGSRVLAMLTCS 53 (581)
Q Consensus 13 ~~kr~LlVLDDv~~~~~---------~~~l~-~~~~~-~~~gs~iivTtr~~ 53 (581)
+.++++||+|++++... +.++. .-++. ..++.+||||+|.+
T Consensus 79 ~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~ 130 (166)
T PF05729_consen 79 KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPR 130 (166)
T ss_pred cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCC
Confidence 47899999999987622 23323 22332 35689999999983
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.91 E-value=0.012 Score=61.89 Aligned_cols=44 Identities=18% Similarity=-0.018 Sum_probs=27.8
Q ss_pred cccCcccccccceEeeccCcCCCCCc-----ccccCCCCccEEEeeCCCH
Q 035853 513 WTMENDAMPKLESLIINPCAYLKILP-----EELWRIKSLTKLELWWPRF 557 (581)
Q Consensus 513 l~~~~~~l~~L~~L~l~~c~~l~~lp-----~~l~~l~~L~~L~l~~c~~ 557 (581)
++....+.+.++.++++.|..-...+ ..-.+. .++.+.++.++.
T Consensus 396 l~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~ 444 (478)
T KOG4308|consen 396 LAAQLASNEKLEILDLSLNSLHDEGAEVLTEQLSRNG-SLKALRLSRNPI 444 (478)
T ss_pred hhhhhhhcchhhhhhhhcCccchhhHHHHHHhhhhcc-cchhhhhccChh
Confidence 34445677888888888776443221 122345 888888888873
|
|
| >TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit | Back alignment and domain information |
|---|
Probab=81.85 E-value=2.8 Score=41.66 Aligned_cols=115 Identities=16% Similarity=0.135 Sum_probs=64.7
Q ss_pred HHHHHhc-ccccCccccCCCCChh-hHHhhcCCcchhhhhhccc-c----ceecccccccc-c--ccceeccccCchhhh
Q 035853 54 DEIFSLC-RLENGEMIHLDSVPAG-PLRAKYQERPLVFLYYGRN-S----LVENMRLTWRI-Q--KWPLLFSIVELPQHL 123 (581)
Q Consensus 54 ~~~~~Lf-~~f~~~~~~~~~~~~~-~i~~~c~GlPLal~~~g~~-t----~~~~~~~~~~~-~--~~~L~~sY~~L~~~l 123 (581)
+|..+++ +..+... ..-+.+.. .|++.|+|.|-.+..++.. . ..+......+. . ...+..+|..|+.+.
T Consensus 162 ~e~~~il~~~~~~~~-~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~l~~~~~~l~~~~ 240 (305)
T TIGR00635 162 EELAEIVSRSAGLLN-VEIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALKALEMLMIDELGLDEID 240 (305)
T ss_pred HHHHHHHHHHHHHhC-CCcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhCCCCCCCCHHH
Confidence 7777777 4433221 11114455 8999999999665444433 0 01100001010 0 344677899999988
Q ss_pred HHHHh-hhcccCCCceechHHHHHHHHhcCCCCCChHHHHHHHHH-HHHhCCceee
Q 035853 124 KLCCL-YLSAFRDAFEIATKELYQLWIAEGFIPDNSEKTAEEYLE-QLISRGFIKV 177 (581)
Q Consensus 124 k~cFl-~~a~Fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~-~L~~~~ll~~ 177 (581)
+.-+. ..+.+..+ .+..+++.... | .....++..++ .|++++|+..
T Consensus 241 ~~~L~al~~~~~~~-~~~~~~ia~~l---g----~~~~~~~~~~e~~Li~~~li~~ 288 (305)
T TIGR00635 241 RKLLSVLIEQFQGG-PVGLKTLAAAL---G----EDADTIEDVYEPYLLQIGFLQR 288 (305)
T ss_pred HHHHHHHHHHhCCC-cccHHHHHHHh---C----CCcchHHHhhhHHHHHcCCccc
Confidence 77665 55667543 45554443322 1 22345667778 6999999964
|
RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. |
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=81.13 E-value=22 Score=36.73 Aligned_cols=88 Identities=20% Similarity=0.292 Sum_probs=50.2
Q ss_pred cceeccccCchhhhHHHHhhhc-ccCC-CceechHHHHHHH--Hh--cCCCCCChHHHHHHHHHHHHhCCceeeeec--c
Q 035853 110 WPLLFSIVELPQHLKLCCLYLS-AFRD-AFEIATKELYQLW--IA--EGFIPDNSEKTAEEYLEQLISRGFIKVKKR--R 181 (581)
Q Consensus 110 ~~L~~sY~~L~~~lk~cFl~~a-~Fp~-~~~i~~~~Li~~w--~a--~g~i~~~~~~~~~~~~~~L~~~~ll~~~~~--~ 181 (581)
....-.+..||.+.|....-++ .... ...+...++.... ++ .|.- +-.......|++.|.+.++++.... +
T Consensus 285 ~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~-~~~~~~~~~~l~~L~~~glI~~~~~~~g 363 (394)
T PRK00411 285 VHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYE-PRTHTRFYEYINKLDMLGIINTRYSGKG 363 (394)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCC-cCcHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 3444567899998776655444 2221 1345666665442 22 2322 1123345669999999999997643 3
Q ss_pred CCCCEeEEEeChHHHHH
Q 035853 182 AGGTIKTCYISFITRGM 198 (581)
Q Consensus 182 ~~g~~~~~~mHdli~dl 198 (581)
..|+...++.+.---++
T Consensus 364 ~~g~~~~~~~~~~~~~~ 380 (394)
T PRK00411 364 GRGRTRLISLSYDPEDV 380 (394)
T ss_pred CCCCeEEEEecCCHHHH
Confidence 34666667665433333
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 83.7 bits (206), Expect = 6e-17
Identities = 64/370 (17%), Positives = 110/370 (29%), Gaps = 90/370 (24%)
Query: 1 FEQRKTALHDYLRNKRY---LIVFEDVISSDVWDYIGKALPDHQNGSRVLAMLTCSDEIF 57
+ L L++K Y L+V +V ++ W+ ++L + T ++
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKIL-LTTRFKQVT 278
Query: 58 SLCRLENGEMIHLDSVPAG-------PLRAKY-------------QERPLVFLYYGRNSL 97
I LD L KY P
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE--S 336
Query: 98 VENMRLTW----RIQKWPLLFSIVEL------PQHLKLCCLYLSAFRDAFEIATKELYQL 147
+ + TW + L +I+E P + LS F + I T L +
Sbjct: 337 IRDGLATWDNWKHVNCDKLT-TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395
Query: 148 WIAEGFIPDNSEKTAEEYLEQLISRGFIKVKKRRAGGTIKTCYISFITRGMLVLVAEFVE 207
W D + + +L V+K+ TI I I + V +
Sbjct: 396 W------FDVIKSDVMVVVNKLHKYSL--VEKQPKESTI---SIPSIYLELKVKLENEYA 444
Query: 208 FVNVVPSTLRADRSLEDFKRISVCRTVTNFDSWE----HFDTYLHSFL--HLTVERKHLS 261
L RS+ D I FDS + + D Y +S + HL
Sbjct: 445 --------LH--RSIVDHYNIPKT-----FDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489
Query: 262 EDVFTLEYCNAICKWFKFL--RLLDLGTIVLDEYPAGINPLLL-----LKYLVLNIPSLK 314
+F + + + F+FL ++ T I L Y+ N P +
Sbjct: 490 MTLFRMVFLD-----FRFLEQKIRHDST--AWNASGSILNTLQQLKFYKPYICDNDPKYE 542
Query: 315 HLPSSLCNLL 324
L +++ + L
Sbjct: 543 RLVNAILDFL 552
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 2e-05
Identities = 96/611 (15%), Positives = 185/611 (30%), Gaps = 161/611 (26%)
Query: 2 EQRKTALHDYLRNKRYLIV---FEDVISSDVWDYIGKALPDHQNGSRVLAMLTCSDEIFS 58
L L +K+ +V E+V+ + + ++ + + R +M+T ++
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRIN-YKFLMSPI---KTEQRQPSMMT---RMYI 113
Query: 59 LCR--LENGEMIHLDSVPAGPLRAKYQERPLVFLYYGRNSLVENMRLTWRIQKWPLLFSI 116
R L N + AKY V ++ ++++ LL
Sbjct: 114 EQRDRLYND----------NQVFAKYN--------------VSRLQPYLKLRQA-LL--- 145
Query: 117 VELPQHLKLC----------CLYLSAFRDAFEIATKELYQL-WIAEGFIPDNSEKTAEEY 165
EL + + L +++ K +++ W+ + + E
Sbjct: 146 -ELRPAKNVLIDGVLGSGKTWVALDVCLS-YKVQCKMDFKIFWLNLK-----NCNSPETV 198
Query: 166 LEQLISRGFIKVKKRRAGGTIKTCYISFITRGMLVLVAEFVEFVNVVPSTLRADRSLEDF 225
LE L + + + I + + + LR + +
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRI---------------HSIQAELRRLLKSKPY 243
Query: 226 KR-ISVCRTVTNFDSWEHFDTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLD 284
+ + V V N +W F+ L + LT K +++ + +
Sbjct: 244 ENCLLVLLNVQNAKAWNAFN--LSCKILLTTRFKQVTDFLSAATTTH------------- 288
Query: 285 LGTIVLDEYPAGINPL----LLLKYLVLNIPSLKHLPSSLCNLLSLHTLDM--------- 331
I LD + + P LLLKYL LP + L +
Sbjct: 289 ---ISLDHHSMTLTPDEVKSLLLKYLDCRPQD---LPREVLTTNPRR-LSIIAESIRDGL 341
Query: 332 -RWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSL----ENLNF-ISVL------ 379
W H K+ + + + PA K L + + +L
Sbjct: 342 ATWDNWKHV--NCDKLTTIIESSLNVLE-PAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398
Query: 380 HPSSCTQDILGRL--PSLQTFRVHENLSSYQSMLSNNLCPLLHLESL--KLVDERTI--A 433
S ++ +L SL + E+ S S+ L + +L +VD I
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458
Query: 434 LQPSSIVLPE-----YQFPPRLIELSLSNTEL--KYDPMPALEKLPHLRVLKLKKNSFFG 486
++ P Y I L N E + + L + F
Sbjct: 459 FDSDDLIPPYLDQYFYSH----IGHHLKNIEHPERMTLFRMV-------FLDFR---FLE 504
Query: 487 RKL--VCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILP---EEL 541
+K+ ++ + L+ + + + + +ND PK E L+ A L LP E L
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDND--PKYERLV---NAILDFLPKIEENL 559
Query: 542 WRIKSLTKLEL 552
K L +
Sbjct: 560 ICSKYTDLLRI 570
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 2e-04
Identities = 76/499 (15%), Positives = 156/499 (31%), Gaps = 143/499 (28%)
Query: 151 EGFIPDNSEKTAEEYLEQLISRGFIK--VKKRRAGGTIKTCYISFITRGMLVLVAEFVEF 208
+ F+ + K ++ + ++S+ I + + A + + +++ + V +FVE
Sbjct: 27 DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM-VQKFVEE 85
Query: 209 V-----NVVPSTLRA---DRSLEDFKRISVCRTVTNFDSWEHFDTY----LHSFLHLTVE 256
V + S ++ S+ I R D+ + F Y L +L L
Sbjct: 86 VLRINYKFLMSPIKTEQRQPSMMTRMYIE-QRDRLYNDN-QVFAKYNVSRLQPYLKL--- 140
Query: 257 RKHLSED-----------------VFTLEYCNAICKWFKFLRLLDLG----TIVLDEYPA 295
R+ L E L+ C + +K +D + P
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLS----YKVQCKMDFKIFWLNLKNCNSPE 196
Query: 296 GINPLLLLKYLVLNI-PSLKHLPSSLCNL-LSLHTLDMRWS-YIHHTP--------DEIW 344
+ L +L+ L+ I P+ N+ L +H++ + P +
Sbjct: 197 TV--LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 345 KMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPSSCTQD--ILGRLPSLQTFRVHE 402
N L + T+ + L + T +
Sbjct: 255 NAKAWNAFNLSCKIL------------------LT-----TRFKQVTDFLSAATTTHI-- 289
Query: 403 NLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVLPE--YQFPPRLIEL---SLSN 457
L ++ L E L+ + + +P LP PR + + S+ +
Sbjct: 290 -------SLDHHSMTLTPDEVKSLL-LKYLDCRPQD--LPREVLTTNPRRLSIIAESIRD 339
Query: 458 TELKYD--PMPALEKLPHLR---VLKLKKNSFFGRKLVCSSGGFP-SLKV-MHLKSMFWL 510
+D +KL + + L+ + RK+ FP S + L S+ W
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEY--RKMFDRLSVFPPSAHIPTILLSLIWF 397
Query: 511 EEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPRFELR------ETLR 564
+ +++D M +++N +L + SL +E + E
Sbjct: 398 DV--IKSDVM-----VVVN----------KLHK-YSL--VEKQPKESTISIPSIYLELKV 437
Query: 565 KFEDR--------EQYDIQ 575
K E+ + Y+I
Sbjct: 438 KLENEYALHRSIVDHYNIP 456
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 3e-14
Identities = 61/307 (19%), Positives = 107/307 (34%), Gaps = 54/307 (17%)
Query: 247 LHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYL 306
++ T + L LE L+L ++ L ++P L L+++
Sbjct: 55 SNNPQIETRTGRALKATADLLEDATQPG-----RVALELRSVPLPQFPDQAFRLSHLQHM 109
Query: 307 VLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKC 366
++ L LP ++ L TL + + + P I +N LR L+ +
Sbjct: 110 TIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA---------- 159
Query: 367 CSSLENL-NFISVLHPSSCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLK 425
C L L ++ S L +LQ+ R+ + SL
Sbjct: 160 CPELTELPEPLASTDASGE----HQGLVNLQSLRLEWT----------------GIRSL- 198
Query: 426 LVDERTIALQPSSIVLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFF 485
P+SI + L L + N+ L PA+ LP L L L+ +
Sbjct: 199 ----------PASIANLQ-----NLKSLKIRNSPLSALG-PAIHHLPKLEELDLRGCTAL 242
Query: 486 GRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEELWRIK 545
R GG LK + LK L ++ + +LE L + C L LP + ++
Sbjct: 243 -RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP 301
Query: 546 SLTKLEL 552
+ + +
Sbjct: 302 ANCIILV 308
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 4e-12
Identities = 52/288 (18%), Positives = 96/288 (33%), Gaps = 32/288 (11%)
Query: 280 LRLLDL-GTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHH 338
L G+ L Y ++ N H N + +
Sbjct: 14 RENLYFQGSTALRPYHDVLSQWQRHYNADRNRW---HSAWRQANSNNPQIETRTGRALKA 70
Query: 339 TPDEIW--KMNELRHLNFGS---ITLPAHPGKCCSSLENL----NFISVLHPSSCTQDIL 389
T D + L S P + S L+++ + L + +
Sbjct: 71 TADLLEDATQPGRVALELRSVPLPQFPDQAFR-LSHLQHMTIDAAGLMELPDT------M 123
Query: 390 GRLPSLQTFRVHEN-LSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI----VLPEY 444
+ L+T + N L + L ++ L L L + + P + E+
Sbjct: 124 QQFAGLETLTLARNPLRA----LPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179
Query: 445 QFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHL 504
Q L L L T ++ P ++ L +L+ LK++ + L + P L+ + L
Sbjct: 180 QGLVNLQSLRLEWTGIRSLP-ASIANLQNLKSLKIRNSPL--SALGPAIHHLPKLEELDL 236
Query: 505 KSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLEL 552
+ L + L+ LI+ C+ L LP ++ R+ L KL+L
Sbjct: 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 1e-07
Identities = 30/137 (21%), Positives = 50/137 (36%), Gaps = 17/137 (12%)
Query: 280 LRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRW-SYIHH 338
L+ L L + PA I L LK L + L L ++ +L L LD+R + + +
Sbjct: 185 LQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRN 244
Query: 339 TPDEIWKMNELRHLNFGS----ITLPAHPGKCCSSLENLNFISVLHPSSCTQ-----DIL 389
P L+ L +TLP + L + L C ++
Sbjct: 245 YPPIFGGRAPLKRLILKDCSNLLTLP-------LDIHRLTQLEKLDLRGCVNLSRLPSLI 297
Query: 390 GRLPSLQTFRVHENLSS 406
+LP+ V +L +
Sbjct: 298 AQLPANCIILVPPHLQA 314
|
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591 | Back alignment and structure |
|---|
Score = 74.5 bits (183), Expect = 3e-14
Identities = 34/235 (14%), Positives = 67/235 (28%), Gaps = 63/235 (26%)
Query: 2 EQRKTALHDYL--RNKRYLIVFEDVISSDVWDYIGKALPDHQNGSRVLA----------- 48
E+ K L + ++ R L++ +DV S V + ++L
Sbjct: 221 EEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAFD-------SQCQILLTTRDKSVTDSV 273
Query: 49 -----------MLTCSDEIFSLCRLENGEMIHLDSV-----------P------AGPLRA 80
L + L N + L P LR
Sbjct: 274 MGPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRD 333
Query: 81 KYQERPLVFLYYGRNSLVENMRLTWRIQ----KWPLLFSIVELPQHLKLCCLYLSAFRDA 136
+N + +R + + S+ L + +K LS +
Sbjct: 334 FPNRWEYYLKQL-QNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKD 392
Query: 137 FEIATKELYQLWIAEGFIPDNSEKTAEEYLEQLISRGFIKVKKRRAGGTIKTCYI 191
++ TK L LW E + E+ L++ +++ + + G Y+
Sbjct: 393 VKVPTKVLCILWDME-------TEEVEDILQEFVNKSLLFCDRN---GKSFRYYL 437
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 70.3 bits (172), Expect = 9e-13
Identities = 33/305 (10%), Positives = 82/305 (26%), Gaps = 46/305 (15%)
Query: 280 LRLLDL-GTIVLDEYPAGINPLLLLKYLVLN----------IPSLKHLPSSLCNLLSLHT 328
L ++L + + P + L L+ L + L +
Sbjct: 493 LTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI 552
Query: 329 LDMRWSYIHHTPDE--IWKMNELRHLNFGS---ITLPAHPGKCCSSLENL----NFISVL 379
M ++ + P + KM +L L+ L A L +L N I +
Sbjct: 553 FYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGT--NVKLTDLKLDYNQIEEI 610
Query: 380 HPSSCTQDILGRLPSLQTFRVHEN-LSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSS 438
++ N L ++ + + + S+ + + +
Sbjct: 611 PED-----FCAFTDQVEGLGFSHNKLKYIPNIFN--AKSVYVMGSVDFSYNKIGSEGRNI 663
Query: 439 IVLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPS 498
+ ++LS E++ P + + L N + +S
Sbjct: 664 SCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM--TSIPENSLKPKD 721
Query: 499 LKVMHLKSMFWL-----------EEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSL 547
+ + + +++ +P L ++ ++ P + L
Sbjct: 722 GNYKNTYLLTTIDLRFNKLTSLSDDFRATT--LPYLSNMDVSYNC-FSSFPTQPLNSSQL 778
Query: 548 TKLEL 552
+
Sbjct: 779 KAFGI 783
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 65.3 bits (159), Expect = 3e-11
Identities = 35/298 (11%), Positives = 81/298 (27%), Gaps = 36/298 (12%)
Query: 280 LRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSS--LCNLLSLHTLDMRWSYIH 337
+ ++ + +L+ P+S L ++ L LD + +
Sbjct: 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR 586
Query: 338 HTPDEIWKMNELRHLNFGS---ITLPAHPGKCCSSLENL----NFISVLHPSSCTQDILG 390
H + +L L +P +E L N + +
Sbjct: 587 H-LEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFN----AK 641
Query: 391 RLPSLQTFRVHEN-LSSYQSMLSNNL--CPLLHLESLKLVDERTIALQPSSIVLPEYQFP 447
+ + + N + S +S ++ ++ ++ L
Sbjct: 642 SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELF-----ATG 696
Query: 448 PRLIELSLSNTELKYDP-------MPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLK 500
+ + LSN + P + L + L+ N + P L
Sbjct: 697 SPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLS 756
Query: 501 VMHLKSMFWLEEWTMENDAMPKLESLIINPCAYL------KILPEELWRIKSLTKLEL 552
M + S + + +L++ I + P + SL +L++
Sbjct: 757 NMDV-SYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 7e-10
Identities = 38/346 (10%), Positives = 93/346 (26%), Gaps = 46/346 (13%)
Query: 247 LHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINP----LLL 302
L LT + + + Y + + L L DL ++ P +
Sbjct: 365 LFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRIS 424
Query: 303 LKYLVLNIPS--LKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLP 360
LK + + + + ++ L L + S + + +
Sbjct: 425 LKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE 484
Query: 361 AHPGKCCS----SLENLNFISVLHPSSCTQDILGRLPSLQTFRVHEN-------LSSYQS 409
L N ++ L P L LP LQ+ + N L + +
Sbjct: 485 LSWSNLKDLTDVELYNCPNMTQL-PDF-----LYDLPELQSLNIACNRGISAAQLKADWT 538
Query: 410 MLSNNLCPLLHLESL--------KLVDERTIALQPS---------SI-VLPEYQFPPRLI 451
L+++ ++ + ++ + L + +L
Sbjct: 539 RLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLT 598
Query: 452 ELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHL-----KS 506
+L L +++ P + L N + ++ + + S
Sbjct: 599 DLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGS 658
Query: 507 MFWLEEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLEL 552
+M++ ++ ++ K E ++ + L
Sbjct: 659 EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIIL 704
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 1e-07
Identities = 28/241 (11%), Positives = 69/241 (28%), Gaps = 37/241 (15%)
Query: 316 LPSSLCNLLSLHTLDMRWSYIHHT-PDEIWKMNELRHLNFGS---ITLPAHPGKCCSSLE 371
L N + L + PD I ++ EL+ L+FG+ G + +
Sbjct: 315 PGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPD 374
Query: 372 NLNFISVLHPSSCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERT 431
+ L L + ++ + + + P+ + L
Sbjct: 375 MSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR----NPEMKPIKKDSRISL----- 425
Query: 432 IALQPSSIVLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVC 491
+ ++ + + A+++L L+++ + F
Sbjct: 426 -----------------KDTQIGNLTNRITFIS-KAIQRLTKLQIIYFANSPFTY----- 462
Query: 492 SSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLE 551
+ + E + + L + + C + LP+ L+ + L L
Sbjct: 463 -DNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLN 521
Query: 552 L 552
+
Sbjct: 522 I 522
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 6e-06
Identities = 36/282 (12%), Positives = 74/282 (26%), Gaps = 53/282 (18%)
Query: 278 KFLRLLDLGTIVLDEYPAGINPLLL---LKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWS 334
L++L GT L + + + + L L+ D+
Sbjct: 347 TELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD 406
Query: 335 YIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPSSCTQDILGRLPS 394
I+ P E+ + + ++ + N I+ + + + RL
Sbjct: 407 AINRNP-EMKPIKKDSRISLKDTQI----------GNLTNRITFISKA------IQRLTK 449
Query: 395 LQTFRVHEN-LSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVLPEYQFPPRLIEL 453
LQ + + + E + + S L ++
Sbjct: 450 LQIIYFANSPFTY--------DNIAVDWEDANSDYAKQYENEELSW-----SNLKDLTDV 496
Query: 454 SLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEW 513
L N L LP L+ L + N + +
Sbjct: 497 ELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD----------------WTRL 540
Query: 514 TMENDAMPKLESLIINPCAYLKILPEE--LWRIKSLTKLELW 553
+ D PK++ + L+ P L ++ L L+
Sbjct: 541 ADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCV 581
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 26/223 (11%), Positives = 64/223 (28%), Gaps = 54/223 (24%)
Query: 280 LRLLDLGTIVLDEYPAGI-NPLLLLKYLVLN------IPS--LKHLPSSLCNLLSLHTLD 330
+ L + ++P + + ++L+ IP LK + N L T+D
Sbjct: 675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTID 734
Query: 331 MRWSYIHHTPDEI--WKMNELRHLNFGS---ITLPAHPGKCCSSLENLNFISVLHPSSCT 385
+R++ + D+ + L +++ + P P S L+
Sbjct: 735 LRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNS-SQLKAFGIRHQRDAEGNR 793
Query: 386 Q-----DILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIV 440
+ PSL + + +N + + +
Sbjct: 794 ILRQWPTGITTCPSLIQLQ-----------IGSN-----DIRKV-----------DEKL- 825
Query: 441 LPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNS 483
P+L L +++ + ++ + L +
Sbjct: 826 ------TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 7e-05
Identities = 35/233 (15%), Positives = 76/233 (32%), Gaps = 39/233 (16%)
Query: 280 LRLLDLGTIVLDEYPAGINPLL-LLKYLVLNIPSLKHLPS--SLCNLLSLHTLDMRWSYI 336
L L L ++E P ++ L + LK++P+ + ++ + ++D ++ I
Sbjct: 597 LTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKI 656
Query: 337 HHTPDEI------WKMNELRHLNFGS---ITLPAHPGKCCSSLENL----NFISVLHPSS 383
I +K + P S + + N ++ + +S
Sbjct: 657 GSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENS 716
Query: 384 CTQ--DILGRLPSLQTFRVHEN-LSSYQSMLSNNL--CPLLHLESLKLVDERTIALQPSS 438
L T + N L+S LS++ L +L ++ + + P+
Sbjct: 717 LKPKDGNYKNTYLLTTIDLRFNKLTS----LSDDFRATTLPYLSNMDVSYNCFSSF-PTQ 771
Query: 439 IVLPEYQFPPRLIELSLS-------NTELKYDPMPALEKLPHLRVLKLKKNSF 484
+ +L + N L+ P + P L L++ N
Sbjct: 772 PLNS-----SQLKAFGIRHQRDAEGNRILRQWP-TGITTCPSLIQLQIGSNDI 818
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 5e-12
Identities = 49/291 (16%), Positives = 94/291 (32%), Gaps = 25/291 (8%)
Query: 275 KWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHL-PSSLCNLLSLHTLDMRW 333
K + D + L + P + + L L L+ L ++ L +LD+ +
Sbjct: 1 KCTVSHEVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGF 58
Query: 334 SYIHH-TPDEIWKMNELRHLNFGS---ITLPAHPGKCCSSLENL----NFISVLHPSSCT 385
+ I P+ K+ L+ LN L C++L L N I + +
Sbjct: 59 NTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNP-- 116
Query: 386 QDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVLPEYQ 445
+ +L T + N S L +L+ L L + + AL+ + +
Sbjct: 117 ---FVKQKNLITLDLSHN--GLSSTKLGTQVQLENLQELLLSNNKIQALKSEEL---DIF 168
Query: 446 FPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGR--KLVCSSGGFPSLKVMH 503
L +L LS+ ++K + L L L + +C S++ +
Sbjct: 169 ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLS 228
Query: 504 LKSMF--WLEEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLEL 552
L + T L L ++ + + + L L
Sbjct: 229 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL 279
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 2e-09
Identities = 46/306 (15%), Positives = 95/306 (31%), Gaps = 68/306 (22%)
Query: 308 LNIPSLKHL-----------PSSLCNLLSLHTLDMRWSYIHH-TPDEIWKMNELRHLN-- 353
L +L L S L L + ++ I H + + +R+LN
Sbjct: 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304
Query: 354 ---------FGSIT-LPAHPGKCCSSLENL----NFISVLHPSSCTQDILGRLPSLQTFR 399
S+ + + LE+L N I + + L +L+
Sbjct: 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM-----FTGLINLKYLS 359
Query: 400 VHENLSSYQSMLSNNLCPLLH--LESLKLVDERTIALQPSSI------------------ 439
+ + +S +++ + L H L L L + ++ +
Sbjct: 360 LSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ 419
Query: 440 VLPEYQFP--PRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSS-GGF 496
L ++ + E+ LS + + +P L+ L L++ + S
Sbjct: 420 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 479
Query: 497 PSLKVMHLKS--MFWLEEWTMENDAMPKLESL--------IINPCAYLKILPEELWRIKS 546
+L ++ L + + + + +E + KLE L + A L +
Sbjct: 480 RNLTILDLSNNNIANINDDMLEG--LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSH 537
Query: 547 LTKLEL 552
L L L
Sbjct: 538 LHILNL 543
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 3e-09
Identities = 36/246 (14%), Positives = 69/246 (28%), Gaps = 47/246 (19%)
Query: 309 NIPSLKHL------------PSSLCNLLSLHTLDMRWSYIHHTPDEIW-KMNELRHLNFG 355
+ L+ L L ++ + + ++ + + L+ L
Sbjct: 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 462
Query: 356 S-----ITLPAHPGKCCSSLENL----NFISVLHPSSCTQDILGRLPSLQTFRVHEN-LS 405
+ P + +L L N I+ ++ D+L L L+ + N L+
Sbjct: 463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND-----DMLEGLEKLEILDLQHNNLA 517
Query: 406 SYQSMLSNNLCP-----LLHLESLKLVDERTIALQPSSIVLPEYQFPPRLIELSLSNTEL 460
+ L HL L L + + L + L L
Sbjct: 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF-----KDLFELKIIDLGLNNL 572
Query: 461 KYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHL---------KSMFWLE 511
P L+ L L+KN + F +L + + +S+ W
Sbjct: 573 NTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFV 632
Query: 512 EWTMEN 517
W E
Sbjct: 633 NWINET 638
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 1e-08
Identities = 44/283 (15%), Positives = 90/283 (31%), Gaps = 36/283 (12%)
Query: 294 PAGINPLLLLKYLVLNIPSLKHL-PSSLCNLLSLHTLDMRWSYIHHTPDE-IWKMNELRH 351
L L L S++ + + +L TLD+ + + T ++ L+
Sbjct: 90 DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQE 149
Query: 352 LNFGS-----ITLPAHPGKCCSSLENL----NFISVLHPSSCTQDILGRLPSLQTFRVHE 402
L + + SSL+ L N I P + L ++
Sbjct: 150 LLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC-----FHAIGRLFGLFLNN 204
Query: 403 N-LSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVLPEYQFPPRLIELSLSNTELK 461
L + + +L L + + ++ + ++ L L LS L
Sbjct: 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKW---TNLTMLDLSYNNLN 261
Query: 462 YDPMPALEKLPHLRVLKLKKNSFFGRKLVCSS-GGFPSLKVMHLKSMFWLEEWTMENDAM 520
+ LP L L+ N+ + L S G +++ ++LK + ++ ++
Sbjct: 262 VVGNDSFAWLPQLEYFFLEYNNI--QHLFSHSLHGLFNVRYLNLKRS--FTKQSISLASL 317
Query: 521 PKLESLIINPCAYLKIL-----------PEELWRIKSLTKLEL 552
PK++ L+ L + +L L L
Sbjct: 318 PKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 8e-12
Identities = 47/237 (19%), Positives = 79/237 (33%), Gaps = 21/237 (8%)
Query: 280 LRLLDLGTIVLDEYPAGI-NPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHH 338
+ ++L + + L+ L L L LPS L L +L L + + +
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFEN 315
Query: 339 -TPDEIWKMNELRHL----NFGSITLPAHPGKCCSSLENL----NFISVLHPSSCTQDIL 389
L HL N + L + +L L + I + L
Sbjct: 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ---L 372
Query: 390 GRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVLPEYQFPPR 449
L LQ+ + N S+ + LE L L R S +Q
Sbjct: 373 RNLSHLQSLNLSYN--EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP----FQNLHL 426
Query: 450 LIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSS--GGFPSLKVMHL 504
L L+LS++ L + LP L+ L L+ N F + ++ L+++ L
Sbjct: 427 LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 1e-10
Identities = 48/286 (16%), Positives = 98/286 (34%), Gaps = 22/286 (7%)
Query: 280 LRLLDLGTIVLDEYPAG-INPLLLLKYLVLNIPSLKHL-PSSLCNL--LSLHTLDMRWSY 335
L L LG+ + P LK L ++ +L + +L + +L++ +
Sbjct: 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190
Query: 336 IHHTPDEIWKMNELRHLNFGS-----ITLPAHPGKCCSSLENLNF--ISVLHPSSCTQDI 388
I + + LNFG + SL F + S +
Sbjct: 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250
Query: 389 LGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVLPEYQFPP 448
L + S+++ + ++ + ++ SN L+ L L ++ PS +
Sbjct: 251 LCEM-SVESINLQKH--YFFNISSNTFHCFSGLQELDLTATH-LSELPSGL-----VGLS 301
Query: 449 RLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKS-- 506
L +L LS + + + P L L +K N+ +L+ + L
Sbjct: 302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD 361
Query: 507 MFWLEEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLEL 552
+ + ++ + L+SL ++ L + E L L+L
Sbjct: 362 IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL 407
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 25/174 (14%), Positives = 47/174 (27%), Gaps = 32/174 (18%)
Query: 312 SLKHLPSSLCNLLSLHTLDMRWSYIHH-TPDEIWKMNELRHLNFGSITLPAHPGKCCSSL 370
L +P +L S L+ ++ + ++ L L+
Sbjct: 23 GLNEIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTR-------------- 66
Query: 371 ENLNFISVLHPSSCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDER 430
I +H D L T + N M L L+ L +
Sbjct: 67 ---CQIYWIHE-----DTFQSQHRLDTLVLTAN--PLIFMAETALSGPKALKHLFFIQTG 116
Query: 431 TIALQPSSIVLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSF 484
++ + L L L + + +P L+VL + N+
Sbjct: 117 ISSIDFIPL-----HNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI 165
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 1e-11
Identities = 43/241 (17%), Positives = 75/241 (31%), Gaps = 25/241 (10%)
Query: 276 WFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVL---NIPSLKHLPSSLCNLLSLHTLDMR 332
K L+ L + + ++ L L++L L + S SL LD+
Sbjct: 323 KLKSLKRLTFTSNKGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381
Query: 333 WSYIHHTPDEIWKMNELRHLNFG----SITLPAHPGKCCSSLENL----NFISVLHPSSC 384
++ + + +L HL+F +L L V
Sbjct: 382 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN--- 438
Query: 385 TQDILGRLPSLQTFRVHEN-LSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVLPE 443
I L SL+ ++ N + L + L +L L L + L P++
Sbjct: 439 --GIFNGLSSLEVLKMAGNSFQE--NFLPDIFTELRNLTFLDLSQCQLEQLSPTAF---- 490
Query: 444 YQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMH 503
L L++S+ + L L+VL N K SL ++
Sbjct: 491 -NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 549
Query: 504 L 504
L
Sbjct: 550 L 550
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 3e-10
Identities = 49/286 (17%), Positives = 88/286 (30%), Gaps = 34/286 (11%)
Query: 249 SFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPA----GINPLLLLK 304
+F + + + L + +L + L + L + L L
Sbjct: 196 AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 255
Query: 305 YLVLNIPSLKHL-------PSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSI 357
L + L +L L ++ + + I D + +HL +
Sbjct: 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY-NFGWQHLELVNC 314
Query: 358 TLPAHPGKCCSSLENLNFISVLHPSSCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCP 417
P SL+ L F S ++ + LPSL+ + N S++ S +
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGLSFKGCCSQSDFG 371
Query: 418 LLHLESLKLVDERTIALQPSSIVLPE-------------------YQFPPRLIELSLSNT 458
L+ L L I + + + L + + LI L +S+T
Sbjct: 372 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431
Query: 459 ELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHL 504
+ L L VLK+ NSF L +L + L
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 7e-06
Identities = 33/162 (20%), Positives = 48/162 (29%), Gaps = 21/162 (12%)
Query: 349 LRHLNFGSITLPAHPGKCCSSLENL----NFISVLHPSSCTQDILGRLPSLQTFRVHENL 404
LNF I P S +NL N + L S P LQ +
Sbjct: 14 CMELNFYKI-----PDNLPFSTKNLDLSFNPLRHLGSYS-----FFSFPELQVLDLSRCE 63
Query: 405 SSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVLPEYQFPPRLIELSLSNTELKYDP 464
++ L HL +L L +L + L +L T L
Sbjct: 64 IQ--TIEDGAYQSLSHLSTLILTGNPIQSLALGAF-----SGLSSLQKLVAVETNLASLE 116
Query: 465 MPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKS 506
+ L L+ L + N KL +L+ + L S
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 47/286 (16%), Positives = 92/286 (32%), Gaps = 46/286 (16%)
Query: 280 LRLLDLGTIVLDE-YPAGINPL----LLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWS 334
L LDL + + Y + L LL L L++ + + + LH L
Sbjct: 151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT---- 206
Query: 335 YIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLE--NLNFISVLHPSSCTQDILGRL 392
LR+ NF S+ + + + LE L + + + L
Sbjct: 207 --------------LRN-NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251
Query: 393 PSLQTFRVHENLSSYQSMLSNNLC----PLLHLESLKLVDERTIALQPSSIVLPEYQFPP 448
L + E +Y +++ L ++ S LV + + ++ +
Sbjct: 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS-----VTIERV--KDFSYNF 304
Query: 449 RLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLK--S 506
L L N + P L+ L L K + F S PSL+ + L
Sbjct: 305 GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF------SEVDLPSLEFLDLSRNG 358
Query: 507 MFWLEEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLEL 552
+ + + + L+ L ++ + + ++ L L+
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDF 403
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 35/187 (18%), Positives = 59/187 (31%), Gaps = 44/187 (23%)
Query: 303 LKYLVLNIPSLKHL-PSSLCNLLSLHTLDMRWSYIHHT-PDEIWKMNELRHLNFGS---I 357
K L L+ L+HL S + L LD+ I ++ L L
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 358 TLPAHPGKCCSSLENL----NFISVLHPSSCTQDILGRLPSLQTFRVHENLSSYQSMLSN 413
+L SSL+ L ++ L +G L +L+ +++
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFP-----IGHLKTLKELN-----------VAH 133
Query: 414 NLCPLLHLESLKLVDERTIALQPSSIVLPEYQFPPRLIELSLSNTELKYDPMPALEKLPH 473
N ++S KL P L L LS+ +++ L L
Sbjct: 134 N-----LIQSFKL---------PEYF-----SNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174
Query: 474 LRVLKLK 480
+ +L L
Sbjct: 175 MPLLNLS 181
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 8e-11
Identities = 47/292 (16%), Positives = 92/292 (31%), Gaps = 38/292 (13%)
Query: 280 LRLLDLG-TIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIH- 337
+ L + + + L L+ L L+ + S SL +LD+ + +
Sbjct: 55 IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSG 114
Query: 338 --HTPDEIWKMNELRHL----NFGSITLPAHPGKCCSSLENL----NFISVLHPSSCTQD 387
T + + L+ L N G +SLE L N IS +
Sbjct: 115 PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG--WV 172
Query: 388 ILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIV--LPEYQ 445
+ L+ + N +S ++ + +L+ +D + ++ +P
Sbjct: 173 LSDGCGELKHLAISGN------KISGDV-DVSRCVNLEFLD-----VSSNNFSTGIPFLG 220
Query: 446 FPPRLIELSLSNTELKYDPMPA-LEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHL 504
L L +S +L + L++L + N F G SL+ + L
Sbjct: 221 DCSALQHLDISGNKL-SGDFSRAISTCTELKLLNISSNQFVGP---IPPLPLKSLQYLSL 276
Query: 505 KS-MF--WLEEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELW 553
F + ++ L L ++ + +P L L L
Sbjct: 277 AENKFTGEIPDFLSGA--CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 3e-07
Identities = 36/239 (15%), Positives = 68/239 (28%), Gaps = 62/239 (25%)
Query: 277 FKFLRLLDL------GTIVLDEYPAGINPLLLLKYLVLNIPSLK-HLPSSLCNLLSLHTL 329
LR L L G I P + + L+ L+L+ L +PS L N +L+ +
Sbjct: 441 LSKLRDLKLWLNMLEGEI-----PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 495
Query: 330 DMRWSYIHHT-PDEIWKMNELRHLN------FGSITLPAHPGKCCSSLENLNFISVLHPS 382
+ + + P I ++ L L G+I P+
Sbjct: 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI-----------------------PA 532
Query: 383 SCTQDILGRLPSLQTFRVHEN---------LSSYQSMLSNNL------CPLLHLESLKLV 427
LG SL ++ N + ++ N + + K
Sbjct: 533 E-----LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 587
Query: 428 DERTIALQPSSIVLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFG 486
L+ I + ++++ P + + L + N G
Sbjct: 588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 646
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 5e-06
Identities = 62/319 (19%), Positives = 101/319 (31%), Gaps = 95/319 (29%)
Query: 273 ICKWFKFLRLLDL------GTIVLDEYPAGI--NPLLLLKYLVLNIPSLK-HLPSSLCNL 323
+ L LDL G I + NP L+ L L +P +L N
Sbjct: 363 LTNLSASLLTLDLSSNNFSGPI-----LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC 417
Query: 324 LSLHTLDMRWSYIHHT-PDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS 382
L +L + ++Y+ T P + +++LR L N + P
Sbjct: 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL---------------N-MLEGEI-PQ 460
Query: 383 SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIV-L 441
L + +L+T + N L+ + PS +
Sbjct: 461 E-----LMYVKTLETLILDFN------DLTGEI--------------------PSGLSNC 489
Query: 442 PEYQFPPRLIELSLSNTELKYDPMPA-LEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLK 500
L +SLSN L +P + +L +L +LKL NSF G + G SL
Sbjct: 490 T------NLNWISLSNNRL-TGEIPKWIGRLENLAILKLSNNSFSGN-IPAELGDCRSLI 541
Query: 501 VMHL----------KSMFWLEE------------WTMENDAMPKLESLIINPCAYLKILP 538
+ L +MF ++ND M K N + I
Sbjct: 542 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS 601
Query: 539 EELWRIKSLTKLELWWPRF 557
E+L R+ + + +
Sbjct: 602 EQLNRLSTRNPCNITSRVY 620
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 1e-10
Identities = 41/283 (14%), Positives = 95/283 (33%), Gaps = 25/283 (8%)
Query: 280 LRLLDLGTIVLDEYPAG-INPLLLLKYLVLNIPSLKHLPSSLCNLL-SLHTLDMR---WS 334
L L++ + L Y + + + + +L L++ L ++L S+ L++R +
Sbjct: 150 LNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLA 209
Query: 335 YIHHTPDEIWKM-NELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPSSCTQDILGRLP 393
+P + ++ + ++ L F L L ++
Sbjct: 210 RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYIL-------ELSEVEFDDCT 262
Query: 394 SLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVLPEYQFPPRLIEL 453
+ + S S L + + L + + Y ++ +
Sbjct: 263 LNGLGDFNPSESDVVSELGKV--ETVTIRRLHIPQFYLFYDLSTV-----YSLLEKVKRI 315
Query: 454 SLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLV--CSSGGFPSLKVMHLK--SMFW 509
++ N+++ P + L L L L +N L G +PSL+ + L +
Sbjct: 316 TVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS 375
Query: 510 LEEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLEL 552
+++ + L SL I+ +P+ + + L L
Sbjct: 376 MQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNL 417
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 4e-08
Identities = 46/223 (20%), Positives = 75/223 (33%), Gaps = 53/223 (23%)
Query: 273 ICKWFKFLRLLDLG----TIVLDEYPAGINPLLLLKYLVL---NIPSLKHLPSSLCNLLS 325
+ K L LDL + A L+ LVL ++ S++ L L +
Sbjct: 329 FSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN 388
Query: 326 LHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENL----NFISVLHP 381
L +LD+ + H PD ++R LN S + +LE L N +
Sbjct: 389 LTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSL 448
Query: 382 SSCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVL 441
LP LQ +S N L++L
Sbjct: 449 ---------FLPRLQELY-----------ISRN-----KLKTL----------------- 466
Query: 442 PEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSF 484
P+ P L+ + +S +LK P ++L L+ + L N +
Sbjct: 467 PDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 48/258 (18%), Positives = 97/258 (37%), Gaps = 30/258 (11%)
Query: 312 SLKHLPSSLCNLLSLHTLDMRWSYIHH-TPDEIWKMNELRHLNFGSITLPAHPGKCCSSL 370
S +PS L ++ +LD+ ++ I + ++ L+ L S + G SL
Sbjct: 16 SFTSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSL 73
Query: 371 ENL-------NFISVLHPSSCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCP-LLHLE 422
+L N +S L S G L SL+ + N YQ++ +L P L +L+
Sbjct: 74 GSLEHLDLSDNHLSSLSSS-----WFGPLSSLKYLNLMGN--PYQTLGVTSLFPNLTNLQ 126
Query: 423 SLKLVDERTIALQPSSIVLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKN 482
+L++ + T + L EL + L+ +L+ + + L L +
Sbjct: 127 TLRIGNVETFSEIRRIDFAG----LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182
Query: 483 SFFGRKLVCSSGGFPSLKVMHLK--SMFWLEEWTMENDAMPKLESLIINPCAYL-----K 535
L + S++ + L+ ++ + + D + + + L
Sbjct: 183 E-SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241
Query: 536 ILPEELWRIKSLTKLELW 553
L + L I L+++E
Sbjct: 242 ELLKLLRYILELSEVEFD 259
|
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549 | Back alignment and structure |
|---|
Score = 63.1 bits (153), Expect = 1e-10
Identities = 25/236 (10%), Positives = 54/236 (22%), Gaps = 52/236 (22%)
Query: 2 EQRKTALHDYLRNKRYLIVFEDVISSDVWDYIGKALPDHQNGSRVL--------AMLTCS 53
++ + + L VF+DV+ + + + R L +
Sbjct: 230 VLKRMICNALIDRPNTLFVFDDVVQEETIRWAQE------LRLRCLVTTRDVEISNAASQ 283
Query: 54 ------------DEIFSLCRLENGEMIHLDSVP--------------------AGPLRAK 81
DE + M + K
Sbjct: 284 TCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK 343
Query: 82 YQERPLVFLYYGRNSLVENMRLTWRIQ----KWPLLFSIVELPQHLKLCCLYLSAFRDAF 137
E+ + + + L + L + +
Sbjct: 344 TFEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGV 403
Query: 138 EIATKELYQLWIAEGFIPDN--SEKTAEEYLEQLISRGFIKVKKRRAGGTIKTCYI 191
+I K + + + + + L++L RG + KR T K +I
Sbjct: 404 DIPVKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALLSGKRMPVLTFKIDHI 459
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 2e-10
Identities = 41/232 (17%), Positives = 77/232 (33%), Gaps = 29/232 (12%)
Query: 267 LEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLN---IPSLKHLPSSLCNL 323
++ K L+ L + + ++ L L++L L+ + S
Sbjct: 314 CKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGT 372
Query: 324 LSLHTLDMRWSYIHHTPDEIWKMNELRHLNFG----SITLPAHPGKCCSSLENL----NF 375
SL LD+ ++ + + +L HL+F +L L
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432
Query: 376 ISVLHPSSCTQDILGRLPSLQTFRVHEN-LSSYQSMLSNNLCPLLHLESLKLVDERTIAL 434
V I L SL+ ++ N + L + L +L L L L
Sbjct: 433 TRVAFN-----GIFNGLSSLEVLKMAGNSFQE--NFLPDIFTELRNLTFLDL---SQCQL 482
Query: 435 QPSSIVLPEYQFP--PRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSF 484
+ L F L L++++ +LK P ++L L+ + L N +
Sbjct: 483 E----QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 2e-08
Identities = 48/234 (20%), Positives = 74/234 (31%), Gaps = 22/234 (9%)
Query: 280 LRLLDLGTIVLDEYPAGI----NPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSY 335
L + + LD Y I N L + L +++ + L++
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-FSYNFGWQHLELVNCK 315
Query: 336 IHHTPDEIWKMNELRHLNFGSITLPAHP-GKCCSSLENL----NFISVLHPSSCTQDILG 390
P K+ L+ L F S SLE L N +S S +
Sbjct: 316 FGQFPT--LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS---DF 370
Query: 391 RLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVLPEYQFPPRL 450
SL+ + N +S+N L LE L + S+ + L
Sbjct: 371 GTTSLKYLDLSFNG---VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV----FLSLRNL 423
Query: 451 IELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHL 504
I L +S+T + L L VLK+ NSF L +L + L
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 29/143 (20%), Positives = 44/143 (30%), Gaps = 16/143 (11%)
Query: 368 SSLENL----NFISVLHPSSCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLES 423
S +NL N + L S P LQ + Q++ L HL +
Sbjct: 28 FSTKNLDLSFNPLRHLGSYS-----FFSFPELQVLDLSRC--EIQTIEDGAYQSLSHLST 80
Query: 424 LKLVDERTIALQPSSIVLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNS 483
L L +L + L +L T L + L L+ L + N
Sbjct: 81 LILTGNPIQSLALGAF-----SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135
Query: 484 FFGRKLVCSSGGFPSLKVMHLKS 506
KL +L+ + L S
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSS 158
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 3e-04
Identities = 42/195 (21%), Positives = 62/195 (31%), Gaps = 36/195 (18%)
Query: 290 LDEYPAGINPLLLLKYLVLNIPSLKHLPS-SLCNLLSLHTLDMRWSYIHHTPDE-IWKMN 347
+ P + K L L+ L+HL S S + L LD+ I D ++
Sbjct: 19 FYKIPDNLPFST--KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 76
Query: 348 ELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPSSCTQDILGRLPSLQTFRVHENLSSY 407
L L N I L L SLQ E +
Sbjct: 77 HLSTLILTG-----------------NPIQSLAL-----GAFSGLSSLQKLVAVET--NL 112
Query: 408 QSMLSNNLCPLLHLESLKLVDERTIALQPSSIVLPEYQFP--PRLIELSLSNTELKYDPM 465
S+ + + L L+ L + S LPEY F L L LS+ +++
Sbjct: 113 ASLENFPIGHLKTLKELNVAHN-----LIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYC 166
Query: 466 PALEKLPHLRVLKLK 480
L L + +L L
Sbjct: 167 TDLRVLHQMPLLNLS 181
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 2e-10
Identities = 34/280 (12%), Positives = 80/280 (28%), Gaps = 55/280 (19%)
Query: 294 PAGINPLLLLKYLVLNIPSLKHL--PSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRH 351
A ++ + + +LK +SL + L L+ ++ + +L
Sbjct: 298 LADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLAS 357
Query: 352 LNFG--SIT-LPAHPGKCCSSLENL----NFISVLHPSSCTQDILGRLPSLQTFRVHEN- 403
LN IT +PA+ +ENL N + + + + N
Sbjct: 358 LNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFD----AKSVSVMSAIDFSYNE 413
Query: 404 LSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVLPEYQFPPRLIELSLSNTELKYD 463
+ S + L K + + ++LSN ++
Sbjct: 414 IGS----VDGKNFDPLDPTPFKGI---------------------NVSSINLSNNQISKF 448
Query: 464 PMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWL-----------EE 512
P L + L N ++ +S + + + + ++
Sbjct: 449 PKELFSTGSPLSSINLMGNML--TEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDD 506
Query: 513 WTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLEL 552
+ +P L + ++ + P + +L +
Sbjct: 507 FRATT--LPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGI 543
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 1e-09
Identities = 28/218 (12%), Positives = 62/218 (28%), Gaps = 21/218 (9%)
Query: 279 FLRLLDLGTIVLDEYPAGINPLLLLKYLVLN----IPSLKHLPSSLCNLLSLHTLDMRWS 334
+ + +P L+ + P K + S L + +
Sbjct: 134 SDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSN 193
Query: 335 YIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLH--PSSCTQDILGRL 392
I + ++ +LR G+ A EN + L
Sbjct: 194 NITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK-----WDNL 248
Query: 393 PSLQTFRVHENLSSYQSMLSNNLCPLLHLESL-----KLVDERTIALQPSSIVLPEYQFP 447
L V+ + + L L L ++ + + + + + L +
Sbjct: 249 KDLTDVEVYNCPNL--TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQA--LADAPVG 304
Query: 448 PRLIELSLSNTELKYDPMPA-LEKLPHLRVLKLKKNSF 484
++ + + LK P+ L+K+ L +L+ N
Sbjct: 305 EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQL 342
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 2e-07
Identities = 27/237 (11%), Positives = 67/237 (28%), Gaps = 33/237 (13%)
Query: 319 SLCNLLSLHTLDMRWSYIHHT-PDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFIS 377
SL + + L + PD I ++ EL L GS +
Sbjct: 76 SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGS-----------------HGEK 118
Query: 378 VLHPSSCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPS 437
V + + + + + + E + + I P
Sbjct: 119 VNERLF----GPKGISANMSDEQKQKMRMH---YQKTFVDYDPREDFSDLIKDCINSDPQ 171
Query: 438 SIVLPEYQF-PPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGF 496
+ + + ++ + + + A+ +L LR + + F
Sbjct: 172 QKSIKKSSRITLKDTQIGQLSNNITFVS-KAVMRLTKLRQFYMGNSPFVA------ENIC 224
Query: 497 PSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELW 553
+ + + + + ++ D + L + + C L LP L + + + +
Sbjct: 225 EAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 25/189 (13%), Positives = 53/189 (28%), Gaps = 47/189 (24%)
Query: 312 SLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEI-WKMNELRHLNFGS---ITLPAHPGKC- 366
+ L + +++ ++++ + I P E+ + L +N +P + K
Sbjct: 421 NFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDE 480
Query: 367 ------CSSLENL----NFISVLHPSSCTQDILGRLPSLQTFRVHEN-LSSYQSMLSNNL 415
L ++ N ++ L LP L + N S
Sbjct: 481 NENFKNTYLLTSIDLRFNKLTKLSDDFR----ATTLPYLVGIDLSYNSFSK----FPTQP 532
Query: 416 CPLLHLESLKLVDERTIALQPSSIVLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLR 475
L+ + ++R N L+ P + P L
Sbjct: 533 LNSSTLKGFGIRNQRDAQ----------------------GNRTLREWP-EGITLCPSLT 569
Query: 476 VLKLKKNSF 484
L++ N
Sbjct: 570 QLQIGSNDI 578
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 2e-09
Identities = 51/287 (17%), Positives = 77/287 (26%), Gaps = 48/287 (16%)
Query: 277 FKFLRLLDLGTIVLDEYPAGINPLLLLKYLVL---NIPSLKHLPSSLCNLLSLHTLDMRW 333
FL+ L L + L L YL L + S SL LD+ +
Sbjct: 327 LPFLKSLTLTMNKGSISFKKVA-LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSF 385
Query: 334 SYIHHTPDEIWKMNELRHLNFG----SITLPAHPGKCCSSLENL----NFISVLHPSSCT 385
+ + EL+HL+F L L +
Sbjct: 386 NGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD---- 441
Query: 386 QDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESL-----KLVDERTIALQPSSIV 440
I L SL T ++ N + LSN +L L +L
Sbjct: 442 -GIFLGLTSLNTLKMAGNSFKDNT-LSNVFANTTNLTFLDLSKCQLEQ------------ 487
Query: 441 LPEYQFP--PRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPS 498
+ F RL L++S+ L + +L L L N S
Sbjct: 488 ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGILQHFPKS 546
Query: 499 LKVMHLK--------SMFWLEEWTMENDAMPKLESLIINPCAYLKIL 537
L +L +W E L ++ CA +
Sbjct: 547 LAFFNLTNNSVACICEHQKFLQWVKEQK--QFLVNVEQMTCATPVEM 591
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 3e-09
Identities = 42/240 (17%), Positives = 71/240 (29%), Gaps = 28/240 (11%)
Query: 279 FLRLLDLGTIVLD--------EYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLD 330
L D+ + + L + + L S+K+L + +L
Sbjct: 255 MEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLED-VPKHFKWQSLS 313
Query: 331 MRWSYIHHTPDEIWKMNELRHLNFGS--ITLPAHPGKCCSSLENL----NFISVLHPSSC 384
+ + P + L+ L ++ SL L N +S S
Sbjct: 314 IIRCQLKQFPTL--DLPFLKSLTLTMNKGSIS-FKKVALPSLSYLDLSRNALSFSGCCSY 370
Query: 385 TQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVLPEY 444
+ SL+ + N ++S N L L+ L + S
Sbjct: 371 SD---LGTNSLRHLDLSFNG---AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAF---- 420
Query: 445 QFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHL 504
+L+ L +S T K D L L LK+ NSF L +L + L
Sbjct: 421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL 480
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 36/282 (12%), Positives = 83/282 (29%), Gaps = 39/282 (13%)
Query: 280 LRLLDLGTIVLDEYPAGI-----NPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWS 334
L +DL + + L +++ + + + LH L +R +
Sbjct: 155 LVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGN 214
Query: 335 YI--HHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPSSCTQDILGRL 392
+ + + + L ++ + + PS I+ L
Sbjct: 215 FNSSNIMKTCLQNLAGLHVHRLIL-----------GEFKDERNLEIFEPS-----IMEGL 258
Query: 393 PSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVLPEYQFPPRLIE 452
+ ++ S L ++ ++ L + + + +
Sbjct: 259 CDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAG-----VSIKYL--EDVPKHFKWQS 311
Query: 453 LSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLK--SMFWL 510
LS+ +LK P LP L+ L L N + PSL + L ++ +
Sbjct: 312 LSIIRCQLKQFP---TLDLPFLKSLTLTMNKG---SISFKKVALPSLSYLDLSRNALSFS 365
Query: 511 EEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLEL 552
+ + L L ++ I+ ++ L L+
Sbjct: 366 GCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDF 406
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 27/143 (18%), Positives = 43/143 (30%), Gaps = 16/143 (11%)
Query: 368 SSLENL----NFISVLHPSSCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLES 423
SS +N+ N + +L S LQ + ++ L HL +
Sbjct: 32 SSTKNIDLSFNPLKILKSYS-----FSNFSELQWLDLSRCEIE--TIEDKAWHGLHHLSN 84
Query: 424 LKLVDERTIALQPSSIVLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNS 483
L L + P S L L T+L + +L L+ L + N
Sbjct: 85 LILTGNPIQSFSPGSF-----SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF 139
Query: 484 FFGRKLVCSSGGFPSLKVMHLKS 506
KL +L + L
Sbjct: 140 IHSCKLPAYFSNLTNLVHVDLSY 162
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 9e-09
Identities = 46/218 (21%), Positives = 81/218 (37%), Gaps = 22/218 (10%)
Query: 277 FKFLRLLDLGTIVLDEYPAGI-NPLLLLKYLVLNIPSLKHLPS-SLCNLLSLHTLDMRWS 334
F L L+L ++ G N L L+ L L LK +P L +L LD+ +
Sbjct: 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN 114
Query: 335 YIHHTPDEIWK-MNELRHLNFGS---ITLPAHPGKCCSSLENL----NFISVLHPSSCTQ 386
I D +++ + L+ L G + + +SLE L ++ + +
Sbjct: 115 KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA--- 171
Query: 387 DILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVLPEYQF 446
L L L R+ + ++ + L L+ L++ + P +
Sbjct: 172 --LSHLHGLIVLRLRHL--NINAIRDYSFKRLYRLKVLEISHWPYLDTMT-----PNCLY 222
Query: 447 PPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSF 484
L LS+++ L P A+ L +LR L L N
Sbjct: 223 GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 5e-08
Identities = 42/218 (19%), Positives = 81/218 (37%), Gaps = 28/218 (12%)
Query: 280 LRLLDLGTIVLDEYPAGI-NPLLLLKYLVLNIPSLKHLPS-SLCNLLSLHTLDMRWSYIH 337
L+ L++G L + L L+ L L +L +P+ +L +L L L +R I+
Sbjct: 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189
Query: 338 HTPDEIWK-MNELRHLNFGS---ITLPAHPGKCCSSLENLNF----ISVLHPSSCTQDIL 389
D +K + L+ L + +L +L+ ++ + +
Sbjct: 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY-----LAV 244
Query: 390 GRLPSLQTFRVHENLSSYQSMLSNN-LCPLLHLESLKLVDERTIALQPSSIVLPEYQFP- 447
L L+ + N S + + L LL L+ ++LV + ++P + F
Sbjct: 245 RHLVYLRFLNLSYNPIST---IEGSMLHELLRLQEIQLVGGQLAVVEPYA-------FRG 294
Query: 448 -PRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSF 484
L L++S +L + +L L L N
Sbjct: 295 LNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 1e-08
Identities = 44/252 (17%), Positives = 94/252 (37%), Gaps = 27/252 (10%)
Query: 275 KWFKFLRLLDLGTIVLDEYPAGI-NPLLLLKYLVLNIPSLKHLPS-SLCNLLSLHTLDMR 332
+ K L++L+L +++ L L+ L L+ L L S + L + +D++
Sbjct: 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346
Query: 333 WSYIHHTPDEIWK-MNELRHLNFGS--ITLPAHPGKCCSSLENLNFISVLHPSSCTQDIL 389
++I D+ +K + +L+ L+ +T + N + L + T +++
Sbjct: 347 KNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLI 406
Query: 390 ----------------GRLPSLQTFRVHENLSSYQSMLSNNLCPLL-HLESLKLVDERTI 432
R+P LQ +++N + S + LE L L +
Sbjct: 407 HLSENRLENLDILYFLLRVPHLQILILNQN--RFSSCSGDQTPSENPSLEQLFLGENMLQ 464
Query: 433 ALQPSSIVLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCS 492
+ + ++ L L L++ L P L LR L L N ++
Sbjct: 465 LAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL---TVLSH 521
Query: 493 SGGFPSLKVMHL 504
+ +L+++ +
Sbjct: 522 NDLPANLEILDI 533
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 9e-07
Identities = 57/337 (16%), Positives = 114/337 (33%), Gaps = 46/337 (13%)
Query: 243 FDTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPLLL 302
+ ++ F ++ +E +S + +T++ + L
Sbjct: 194 WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSL------------ILAHH 241
Query: 303 LKYLVLNIPSLKHLPSSL---CNLLSLHTLDMRWSYIHHTPDEIWK-MNELRHLNFGSIT 358
+ ++K + S+ LD+ ++ +++ + +L+ LN
Sbjct: 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK 301
Query: 359 LPAHPGKCCSSLENL-------NFISVLHPSSCTQDILGRLPSLQTFRVHEN-LSSYQSM 410
+ + L+NL N + L+ S+ LP + + +N ++ Q
Sbjct: 302 INKIADEAFYGLDNLQVLNLSYNLLGELYSSN-----FYGLPKVAYIDLQKNHIAIIQDQ 356
Query: 411 LSNNLCPL--LHLESLKLVDE------RTIALQPSSIV-LPEYQFPPRLIELSLSNTELK 461
L L L L L I L + +V LP+ + LS L+
Sbjct: 357 TFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINL--TANLIHLSENRLE 414
Query: 462 Y-DPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDA- 519
D + L ++PHL++L L +N F + PSL+ + L W E
Sbjct: 415 NLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWD 474
Query: 520 ----MPKLESLIINPCAYLKILPEELWRIKSLTKLEL 552
+ L+ L +N + P + +L L L
Sbjct: 475 VFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSL 511
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 3e-06
Identities = 43/223 (19%), Positives = 79/223 (35%), Gaps = 35/223 (15%)
Query: 275 KWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWS 334
K+ + L+ LDL L I+ + + + L+ L LP L+ + + + +
Sbjct: 359 KFLEKLQTLDLRDNALTT----IHFIPSIPDIFLSGNKLVTLPK---INLTANLIHLSEN 411
Query: 335 YIHHTPDE--IWKMNELRHLNFGSITLPAHPGKC-CSSLENL-------NFISVLHPSSC 384
+ + + ++ L+ L + G S +L N + + +
Sbjct: 412 RLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETEL 471
Query: 385 TQDILGRLPSLQTFRVHEN-LSSYQSMLSNNLCPL--LHLESLKLVDERTIALQPSSIVL 441
D+ L LQ ++ N L+S + ++L L L L S +L L
Sbjct: 472 CWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV------------L 519
Query: 442 PEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSF 484
P L L +S +L P + L VL + N F
Sbjct: 520 SHNDLPANLEILDISRNQLL---APNPDVFVSLSVLDITHNKF 559
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 1e-05
Identities = 52/313 (16%), Positives = 96/313 (30%), Gaps = 47/313 (15%)
Query: 258 KHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEY---PAGINPLLLLKYLVLNIPSLK 314
L D F + L L L L + L L L L+ ++
Sbjct: 86 YFLHPDAF---------QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR 136
Query: 315 HLP--SSLCNLLSLHTLDMRWSYIHHTPDEIWK---MNELRHLNFGSITLPAHPGKCCSS 369
L S L SL ++D + I + + L + + +L S
Sbjct: 137 SLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSL--------YS 188
Query: 370 LENLNFISVLHPSSCTQDILGRLPSLQTFRVHENLSSYQSM--LSNNLCPLLHLESLKLV 427
++++ ++P R L+ V N + SN + +
Sbjct: 189 RVSVDWGKCMNPF--------RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240
Query: 428 DERTIALQPSSI-VLPEYQFPP----RLIELSLSNTELKYDPMPALEKLPHLRVLKLKKN 482
+I + F + L LS+ + E L L+VL L N
Sbjct: 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN 300
Query: 483 SFFGRKLVCSS-GGFPSLKVMHLK--SMFWLEEWTMENDAMPKLESLIINPCAYLKILPE 539
K+ + G +L+V++L + L +PK+ + + I +
Sbjct: 301 KI--NKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYG--LPKVAYIDLQKNHIAIIQDQ 356
Query: 540 ELWRIKSLTKLEL 552
++ L L+L
Sbjct: 357 TFKFLEKLQTLDL 369
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 5e-08
Identities = 48/256 (18%), Positives = 82/256 (32%), Gaps = 50/256 (19%)
Query: 277 FKFLRLLDLGTIVLDEYPAGI-NPLLLLKYLVLNIPSLKHLPS-SLCNLLSLHTLDMRWS 334
+ L +L L + G N L L L L L +P+ + L L L +R +
Sbjct: 87 LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN 146
Query: 335 YIHHTPDEIWK-MNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPSSCTQDILGRLP 393
I P + + LR L+ L L +S + L
Sbjct: 147 PIESIPSYAFNRIPSLRRLD----------------LGELKRLSYISE-----GAFEGLS 185
Query: 394 SLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVLPEYQFP--PRLI 451
+L+ + L+ L+ L+ L L A++P S F L
Sbjct: 186 NLRYLNLAMCNLREIPNLTP----LIKLDELDLSGNHLSAIRPGS-------FQGLMHLQ 234
Query: 452 ELSLSNTELKYDPMPALEKLPHLRVLKLKKN--SFFGRKLVCSSGGFPSLKVMHLKS--- 506
+L + ++++ A + L L + L N + L L+ +HL
Sbjct: 235 KLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF---TPLHHLERIHLHHNPW 291
Query: 507 -----MFWLEEWTMEN 517
+ WL W +
Sbjct: 292 NCNCDILWLSWWIKDM 307
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 9e-08
Identities = 24/209 (11%), Positives = 54/209 (25%), Gaps = 13/209 (6%)
Query: 280 LRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHT 339
L L+L + + + LK L L+ L + + + + +R + +
Sbjct: 171 LEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI 229
Query: 340 PDEIWKMNELRHLN-----FGSITLPAHPGKCCSSLENLNFISVLHPSSCTQDILGRLPS 394
+ L H + F TL K + + ++ T
Sbjct: 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSK----NQRVQTVAKQTVKKLTGQNEEECTV 285
Query: 395 LQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVLPEYQFPPRLIELS 454
+ L + L+ + + E + R E+
Sbjct: 286 PTLGHYGAYCCEDLPAPFADRLIALKRKEHALLS---GQGSETERLECERENQARQREID 342
Query: 455 LSNTELKYDPMPALEKLPHLRVLKLKKNS 483
+ + + L+ KK +
Sbjct: 343 ALKEQYRTVIDQVTLRKQAKITLEQKKKA 371
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 6e-04
Identities = 37/260 (14%), Positives = 82/260 (31%), Gaps = 54/260 (20%)
Query: 300 LLLLKYLVLNIPSLKHLPSS-LCNLLSLHTLDMRWSYIHH-TPDEIWKMNELRHLNFGSI 357
K + SLK +S + ++ LD+ + + + ++ +L LN S
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS- 67
Query: 358 TLPAHPGKCCSSLENLNFISVLHPSSCTQDILGRLPSLQTFRVHEN-LSSYQSMLSNNLC 416
N + L L +L+T ++ N + L
Sbjct: 68 ----------------NVLYETLD-------LESLSTLRTLDLNNNYVQE--------LL 96
Query: 417 PLLHLESLKLVDERTIALQPSSIVLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRV 476
+E+L + + S + L+N ++ ++
Sbjct: 97 VGPSIETLHAANNNISRVSCSRG--------QGKKNIYLANNKITMLRDLDEGCRSRVQY 148
Query: 477 LKLKKNSFFGRKLVCSSGGFPSLKVMHLKS--MFWLEEWTMENDAMPKLESLII--NPCA 532
L LK N + +L+ ++L+ ++ ++ + KL++L + N
Sbjct: 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV----FAKLKTLDLSSN--- 201
Query: 533 YLKILPEELWRIKSLTKLEL 552
L + E +T + L
Sbjct: 202 KLAFMGPEFQSAAGVTWISL 221
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 2e-07
Identities = 53/281 (18%), Positives = 84/281 (29%), Gaps = 59/281 (20%)
Query: 277 FKFLRLLDLGTIVLDEYPAGI-NPLLLLKYLVLNIPSLKHLPS-SLCNLLSLHTLDMRWS 334
L +L LG + + G N L L L L L +PS + L L L +R +
Sbjct: 98 LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN 157
Query: 335 YIHHTPDEIWK-MNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPSSCTQDILGRLP 393
I P + + L L+ L L + + L
Sbjct: 158 PIESIPSYAFNRVPSLMRLD----------------LGELKKLEYISE-----GAFEGLF 196
Query: 394 SLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVLPEYQFP--PRLI 451
+L+ + L+ L+ LE L++ ++P S F L
Sbjct: 197 NLKYLNLGMCNIKDMPNLTP----LVGLEELEMSGNHFPEIRPGS-------FHGLSSLK 245
Query: 452 ELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGF---PSLKVMHLKS-- 506
+L + N+++ A + L L L L N+ L F L +HL
Sbjct: 246 KLWVMNSQVSLIERNAFDGLASLVELNLAHNNL--SSL--PHDLFTPLRYLVELHLHHNP 301
Query: 507 ------MFWLEEWTMENDAMPKLESLIINPCAYLKILPEEL 541
+ WL W E C P +
Sbjct: 302 WNCDCDILWLAWWLREYIPTNSTCCGR---CHA----PMHM 335
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 2e-07
Identities = 64/290 (22%), Positives = 100/290 (34%), Gaps = 57/290 (19%)
Query: 280 LRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHT 339
+L++G L P + + LV+ +L LP+ L TL++ + +
Sbjct: 42 NAVLNVGESGLTTLPDCL--PAHITTLVIPDNNLTSLPALPPEL---RTLEVSGNQLTSL 96
Query: 340 PDEIWKMNELRHLNFGSITLPAHPGKCCSSLENL----NFISVLHPSSCTQDILGRLPSL 395
P + EL + LPA P S L L N ++ L P L
Sbjct: 97 PVLPPGLLELSIFSNPLTHLPALP----SGLCKLWIFGNQLTSLPVL---------PPGL 143
Query: 396 QTFRVHEN-LSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVLPEYQFPPRLIELS 454
Q V +N L+S ++ S L L + + +L P L ELS
Sbjct: 144 QELSVSDNQLASLPALPSE-------LCKLWAYNNQLTSL-PMLP--------SGLQELS 187
Query: 455 LSNTELKYDPMPALEKLPHLRVLKLKKNSFFG-----RKLVCSS---GGFP----SLKVM 502
+S+ +L P +L L + S ++L+ S P LK +
Sbjct: 188 VSDNQLASLP-TLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKEL 246
Query: 503 HLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLEL 552
+ L M L SL + L LPE L + S T + L
Sbjct: 247 MVSGNR-LTSLPML---PSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNL 291
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 3e-06
Identities = 49/234 (20%), Positives = 76/234 (32%), Gaps = 49/234 (20%)
Query: 280 LRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLL--------------S 325
LR L++ L P LL L + L LPS LC L
Sbjct: 83 LRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPG 142
Query: 326 LHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENL----NFISVLHP 381
L L + + + P ++ +L N +LP P L+ L N ++ L P
Sbjct: 143 LQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPS----GLQELSVSDNQLASL-P 197
Query: 382 SSCTQDILGRLPSLQTFRVH-----ENLSSYQS-MLSNN----LCPLL-HLESLKLVDER 430
+ L L + S + ++S N L L L+ L + R
Sbjct: 198 TL-----PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNR 252
Query: 431 TIALQPSSIVLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSF 484
+L P L+ LS+ +L P +L L + L+ N
Sbjct: 253 LTSL-PMLP--------SGLLSLSVYRNQLTRLP-ESLIHLSSETTVNLEGNPL 296
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 3e-07
Identities = 40/218 (18%), Positives = 76/218 (34%), Gaps = 19/218 (8%)
Query: 280 LRLLDLGTIVLDEYPAGI-NPLLLLKYLVLNIPSLKHLP--SSLCNLLSLHTLDM-RWSY 335
L LDL L + PL L +L L K L S +L L L +
Sbjct: 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDT 161
Query: 336 IHHTPDEI-WKMNELRHLNFGSITLPAHPGKCCSSLENLNF--ISVLHPSSCTQDILGRL 392
+ + L L + L ++ K S++N++ + + + +
Sbjct: 162 FTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVT 221
Query: 393 PSLQTFRVHEN------LSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVLPEYQF 446
S++ + + S + +N+L ++K+ DE + +
Sbjct: 222 SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQIS---- 277
Query: 447 PPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSF 484
L+EL S +LK P ++L L+ + L N +
Sbjct: 278 --GLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 3e-07
Identities = 42/213 (19%), Positives = 73/213 (34%), Gaps = 25/213 (11%)
Query: 279 FLRLLDLGTIVLDEYPAGINPLLLLKYLVL---NIPSLKHLPSSLCNLLSLHTLDMRWSY 335
LR++ + L++ P + P L L I +K NL +LHTL + +
Sbjct: 32 HLRVVQCSDLGLEKVPKDLPPDT--ALLDLQNNKITEIK--DGDFKNLKNLHTLILINNK 87
Query: 336 IHHTPDEI-WKMNELRHLNFGSITLPAHPGKCCSSLENL----NFISVLHPSSCTQDILG 390
I + +L L L P K +L+ L N I+ + +
Sbjct: 88 ISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRK-----SVFN 142
Query: 391 RLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVLPEYQFPPRL 450
L + + N + + + L +++ D + PP L
Sbjct: 143 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--------PPSL 194
Query: 451 IELSLSNTELKYDPMPALEKLPHLRVLKLKKNS 483
EL L ++ +L+ L +L L L NS
Sbjct: 195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 3e-07
Identities = 39/211 (18%), Positives = 66/211 (31%), Gaps = 37/211 (17%)
Query: 280 LRLLDLG--TIVLDEYPAGIN-PLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYI 336
L L L + + + LKYL L+ + + S+ L L LD + S +
Sbjct: 54 LTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 113
Query: 337 HHTPDE--IWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPSSCTQDILGRLPS 394
+ + L +L+ V I L S
Sbjct: 114 KQMSEFSVFLSLRNLIYLDISH-----------------THTRVAFN-----GIFNGLSS 151
Query: 395 LQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVLPEYQFP--PRLIE 452
L+ ++ N S ++ L + L +L L L + L+ L F L
Sbjct: 152 LEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQ---LE----QLSPTAFNSLSSLQV 203
Query: 453 LSLSNTELKYDPMPALEKLPHLRVLKLKKNS 483
L++S+ + L L+VL N
Sbjct: 204 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 8e-04
Identities = 32/144 (22%), Positives = 48/144 (33%), Gaps = 20/144 (13%)
Query: 368 SSLENL----NFISVLHPSSCTQDILGRLPSLQTFRVHEN-LSSYQSMLSNNLCPLLHLE 422
+ L L N +S C SL+ + N + + +S+N L LE
Sbjct: 52 TQLTKLSLSSNGLSFKG---CCSQSDFGTTSLKYLDLSFNGVIT----MSSNFLGLEQLE 104
Query: 423 SLKLVDERTIALQPSSIVLPEYQFP--PRLIELSLSNTELKYDPMPALEKLPHLRVLKLK 480
L + S+ F LI L +S+T + L L VLK+
Sbjct: 105 HLDFQHSNLKQMSEFSV------FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 158
Query: 481 KNSFFGRKLVCSSGGFPSLKVMHL 504
NSF L +L + L
Sbjct: 159 GNSFQENFLPDIFTELRNLTFLDL 182
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 58/301 (19%), Positives = 91/301 (30%), Gaps = 73/301 (24%)
Query: 278 KFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIH 337
+ L+L + L P L + LV + SL LP +L SL + +
Sbjct: 71 RQAHELELNNLGLSSLPELPPHL---ESLVASCNSLTELPELPQSLKSLLVDNNNLKALS 127
Query: 338 HTPD----------------EIWKMNELRHLNFGS---ITLPAHPGKCCSSLENL----N 374
P E+ + L+ ++ + LP P SLE + N
Sbjct: 128 DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPP----SLEFIAAGNN 183
Query: 375 FISVLHPSSCTQDILGRLPSLQTFRVHEN-LSSYQSMLSNNLCPL--LHLESLKLVDERT 431
+ L L LP L N L L + L + + L +
Sbjct: 184 QLEELPE-------LQNLPFLTAIYADNNSLKK----LPDLPLSLESIVAGNNILEE--- 229
Query: 432 IALQPSSIVLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVC 491
LPE Q P L + N LK P + P L L ++ N L
Sbjct: 230 ---------LPELQNLPFLTTIYADNNLLKTLP----DLPPSLEALNVRDNYL--TDLPE 274
Query: 492 SSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLE 551
L V + ++ P L L + ++ L + SL +L
Sbjct: 275 LPQSLTFLDVSENIF-------SGLSELPPNLYYLNAS-SNEIRSLCDLP---PSLEELN 323
Query: 552 L 552
+
Sbjct: 324 V 324
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 49.2 bits (117), Expect = 3e-06
Identities = 40/209 (19%), Positives = 69/209 (33%), Gaps = 35/209 (16%)
Query: 280 LRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHT 339
L L + L P + P + L + +L LP +L L D R S +
Sbjct: 61 FSELQLNRLNLSSLPDNLPPQI--TVLEITQNALISLPELPASLEYLDACDNRLSTL--- 115
Query: 340 PDEIWKMNELRHLNFGSIT-LPAHPGKCCSSLENL----NFISVLHPSSCTQDILGRLPS 394
P+ + L ++ +T LP P LE + N +++L P T S
Sbjct: 116 PELPASLKHL-DVDNNQLTMLPELPA----LLEYINADNNQLTML-PELPT--------S 161
Query: 395 LQTFRVHEN-LSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVLPEYQFPPRLIEL 453
L+ V N L+ + + LE+L + +L + I
Sbjct: 162 LEVLSVRNNQLTFLPELPES-------LEALDVSTNLLESLPAVPVRNH--HSEETEIFF 212
Query: 454 SLSNTELKYDPMPALEKLPHLRVLKLKKN 482
+ + P + L + L+ N
Sbjct: 213 RCRENRITHIP-ENILSLDPTCTIILEDN 240
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 3e-04
Identities = 46/276 (16%), Positives = 74/276 (26%), Gaps = 71/276 (25%)
Query: 287 TIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKM 346
+ +Y + + N L C + L + + PD +
Sbjct: 23 SGTYADYFSAWDKWEKQALPGENRNEAVSLLKE-CLINQFSELQLNRLNLSSLPDNLPP- 80
Query: 347 NELRHLNFGS---ITLPAHPGKCCSSLENL----NFISVLHPSSCTQDILGRLPSLQTFR 399
++ L I+LP P SLE L N +S L P L L
Sbjct: 81 -QITVLEITQNALISLPELPA----SLEYLDACDNRLSTL-PEL-----PASLKHLD--- 126
Query: 400 VHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVLPEYQFPPRLIELSLSNTE 459
+ NN L L P L ++ N +
Sbjct: 127 -----------VDNN-----QLTML-----------PELP--------ALLEYINADNNQ 151
Query: 460 LKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDA 519
L P E L VL ++ N +L SL+ + + + LE
Sbjct: 152 LTMLP----ELPTSLEVLSVRNN-----QLTFLPELPESLEALDVSTNL-LESLPAVPVR 201
Query: 520 MPKLESLIINPCAY---LKILPEELWRIKSLTKLEL 552
E I + +PE + + + L
Sbjct: 202 NHHSEETEIFFRCRENRITHIPENILSLDPTCTIIL 237
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 3e-06
Identities = 42/211 (19%), Positives = 71/211 (33%), Gaps = 24/211 (11%)
Query: 279 FLRLLDLGTIVLDEYPAGINPLLLLKYLVLN-IPSLKHLPSSLCNLLSLHTLDMRWSYIH 337
LR++ + L P I+P L L N I L+ L L+ L + + I
Sbjct: 34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELR--KDDFKGLQHLYALVLVNNKIS 91
Query: 338 HTPDEI-WKMNELRHLNFGSITLPAHPGKCCSSLENL----NFISVLHPSSCTQDILGRL 392
++ + +L+ L L P SSL L N I + L
Sbjct: 92 KIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGV-----FSGL 146
Query: 393 PSLQTFRVHEN-LSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVLPEYQFPPRLI 451
++ + N L + S L L L++ + + + P L
Sbjct: 147 RNMNCIEMGGNPLEN--SGFEPGAFDGLKLNYLRISEAKLTGIPKDL--------PETLN 196
Query: 452 ELSLSNTELKYDPMPALEKLPHLRVLKLKKN 482
EL L + +++ + L + L L L N
Sbjct: 197 ELHLDHNKIQAIELEDLLRYSKLYRLGLGHN 227
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 4e-06
Identities = 45/250 (18%), Positives = 90/250 (36%), Gaps = 37/250 (14%)
Query: 277 FKFLRLLDLGTIVLDEYPAGI-NPLLLLKYLVLNIPSLKHLPSSL-CNLLSLHTLDMRWS 334
F+ + LL+L + ++E ++ L + ++++LP + N+ L L + +
Sbjct: 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 133
Query: 335 YIHHTPDEI-WKMNELRHLNFGS---ITLPAHPGKCCSSLENL----NFISVLHPSSCTQ 386
+ P I +L L+ + + + +SL+NL N ++ + S
Sbjct: 134 DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS 193
Query: 387 -----------DILGRLPSLQTFRVHEN-LSSYQSMLSNNLCPLLHLESLKLVDERTIAL 434
L +++ N ++ + ++ L +L L+ L D
Sbjct: 194 LFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVEL-TILKLQHNNLTD------ 246
Query: 435 QPSSIVLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSG 494
P L+E+ LS EL+ K+ L L + N L
Sbjct: 247 ------TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL--VALNLYGQ 298
Query: 495 GFPSLKVMHL 504
P+LKV+ L
Sbjct: 299 PIPTLKVLDL 308
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 6e-04
Identities = 41/314 (13%), Positives = 91/314 (28%), Gaps = 37/314 (11%)
Query: 280 LRLLDLGTIVLDEYPAGI-NPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHH 338
L +DL L++ + L+ L ++ L L + +L LD+ +++ H
Sbjct: 256 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH 315
Query: 339 TPDEIWKMNELRHLNFGS---ITLPAHPGKCCSSLENLNFISVLH---PSSCTQDILGRL 392
+ + L +L +TL S+ L +++ H + + + +
Sbjct: 316 VERNQPQFDRLENLYLDHNSIVTLKL------STHHTLKNLTLSHNDWDCNSLRALFRNV 369
Query: 393 PSLQTFRVHENLSSYQSMLSNNLC----------PLLHLESLKLVDERTIALQPSSIVLP 442
++ + C L ++ +V++ +Q +
Sbjct: 370 ARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEK----VQRAQGRCS 425
Query: 443 EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVM 502
+ LS T+ P+ E+L + N ++ +++
Sbjct: 426 ATDTINSVQSLSHYITQQGGVPLQGNEQLE------AEVNELRAEVQQLTNEQIQQEQLL 479
Query: 503 HLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPRFELRET 562
L N L E T+ E
Sbjct: 480 QGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRT----EADAK 535
Query: 563 LRKFEDREQYDIQI 576
++ ED EQ +I +
Sbjct: 536 QKETEDLEQENIAL 549
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 6e-06
Identities = 42/214 (19%), Positives = 84/214 (39%), Gaps = 33/214 (15%)
Query: 277 FKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYI 336
L L +GT + + A + L L+ L LN ++ + L NL +++L++ ++
Sbjct: 87 LVKLTNLYIGTNKITDISA-LQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHN 144
Query: 337 HHTPDEIWKMNELRHLNFGS--IT-LPAHPGKCCSSLENL----NFISVLHPSSCTQDIL 389
+ M L +L + + P + L +L N I + P L
Sbjct: 145 LSDLSPLSNMTGLNYLTVTESKVKDVT--PIANLTDLYSLSLNYNQIEDISP-------L 195
Query: 390 GRLPSLQTFRVHEN-LSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVLPEYQFPP 448
L SL F + N ++ + + L SLK+ + + L P + +
Sbjct: 196 ASLTSLHYFTAYVNQITD-----ITPVANMTRLNSLKIGNNKITDLSPLANL-------S 243
Query: 449 RLIELSLSNTELKYDPMPALEKLPHLRVLKLKKN 482
+L L + ++ + A++ L L++L + N
Sbjct: 244 QLTWLEIGTNQISD--INAVKDLTKLKMLNVGSN 275
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 50/291 (17%), Positives = 89/291 (30%), Gaps = 53/291 (18%)
Query: 303 LKYLVLNIPSLKHLPSS-LCNLLSLHTLDMRWSYIHHTPDEI-WKMNELRHLNFGS--IT 358
K + +++ LP++ L + + L++ I + ++ L G I
Sbjct: 47 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 106
Query: 359 -LPAHPGKCCSSLENL----NFISVLHPSSCTQDILGRLPSLQTFRVHEN---------- 403
LP H + L L N +S L I P L T + N
Sbjct: 107 YLPPHVFQNVPLLTVLVLERNDLSSLPR-----GIFHNTPKLTTLSMSNNNLERIEDDTF 161
Query: 404 --LSSYQSM-LSNN------LCPLLHLESLKLVDERTIALQPSSIV------------LP 442
+S Q++ LS+N L + L + L V +
Sbjct: 162 QATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR 221
Query: 443 EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSS-GGFPSLKV 501
L L L + L L P L + L N K++ L+
Sbjct: 222 GPVNV-ELTILKLQHNNLT--DTAWLLNYPGLVEVDLSYNEL--EKIMYHPFVKMQRLER 276
Query: 502 MHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLEL 552
+++ + L + +P L+ L ++ L + + L L L
Sbjct: 277 LYISNNR-LVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYL 325
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 1e-05
Identities = 40/259 (15%), Positives = 84/259 (32%), Gaps = 43/259 (16%)
Query: 233 TVTNFDSWEHFDTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDE 292
+ + FD S L++ + DVF + I + F + + +
Sbjct: 258 KLQGQLDFRDFDYSGTSLKALSIH--QVVSDVFGFPQ-SYIYEIFSNMNIKNFTVSGTRM 314
Query: 293 YPAGI-NPLLLLKYLVLNIPSLKHLPSSLC-NLLSLHTLDMRWSYIHHTPDEI---WKMN 347
+ + +L + L C +L L TL ++ + + +M
Sbjct: 315 VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK 374
Query: 348 ELRHLNFGSITLPAH-PGKCCSSLENLNFISVLHPSSCTQDILGRLPSLQTFRVHENLSS 406
L+ L+ ++ CS ++L L+ SS L + +
Sbjct: 375 SLQQLDISQNSVSYDEKKGDCSWTKSLL---SLNMSSN------ILTDTIFRCLPPRIK- 424
Query: 407 YQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVLPEYQFP-PRLIELSLSNTELKYDPM 465
L +N ++S+ P+ L EL++++ +LK P
Sbjct: 425 -VLDLHSN-----KIKSI-----------------PKQVVKLEALQELNVASNQLKSVPD 461
Query: 466 PALEKLPHLRVLKLKKNSF 484
++L L+ + L N +
Sbjct: 462 GIFDRLTSLQKIWLHTNPW 480
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 2e-05
Identities = 37/219 (16%), Positives = 64/219 (29%), Gaps = 30/219 (13%)
Query: 280 LRLLDLGTIVLDEY--PAGI-NPLLLLKYLVLNIPSLKHLP--SSLCNLLSLHTLDMRWS 334
L +L L LD PL L+ LVL ++K + S N+ H LD+ ++
Sbjct: 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN 164
Query: 335 YIHHTPDEIWKM---NELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPSSCTQDILGR 391
+ +E L SITL + N +
Sbjct: 165 KVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF--------------K 210
Query: 392 LPSLQTFRVHEN-LSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIV---LPEYQF- 446
S+ T + N + + ++SL L + + + F
Sbjct: 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK 270
Query: 447 ---PPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKN 482
+ LS +++ L L L +N
Sbjct: 271 GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN 309
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 3e-05
Identities = 49/297 (16%), Positives = 99/297 (33%), Gaps = 46/297 (15%)
Query: 280 LRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHT 339
L+ L G V D + L L+ L ++ + + L L +L +L + I
Sbjct: 158 LQQLSFGNQVTD--LKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDI 214
Query: 340 PDEIWKMNELRHLNFGS--ITLPAHPGKCCSSLENL----NFISVLHPSSCTQDILGRLP 393
+ + L L+ + ++L +L N IS L P L L
Sbjct: 215 T-PLGILTNLDELSLNGNQLKDIGTLAS-LTNLTDLDLANNQISNLAP-------LSGLT 265
Query: 394 SLQTFRVHEN----LSSYQSM-------LSNN----LCPLLHLESLKLVDERTIALQPSS 438
L ++ N +S + L+ N + P+ +L++L + L ++
Sbjct: 266 KLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLT-----LYFNN 320
Query: 439 IV-LPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFP 497
I + +L L N ++ + +L L ++ L N +
Sbjct: 321 ISDISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISD---LTPLANLT 375
Query: 498 SLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWW 554
+ + L + + A + + + N I P + S T+ ++ W
Sbjct: 376 RITQLGL-NDQAWTNAPVNYKANVSIPNTVKNVTG-ALIAPATISDGGSYTEPDITW 430
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 46/287 (16%), Positives = 99/287 (34%), Gaps = 45/287 (15%)
Query: 280 LRLLDLGTIVLDEYPAG-INPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHH 338
++ LDL L + A + P L+ L L+ L L +L +L TLD+ +Y+
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ- 93
Query: 339 TPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENL----NFISVLHPSSCTQDILGRLPS 394
E+ + L+ + + +N+ N I++L G
Sbjct: 94 ---ELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLD-----EGCRSR 145
Query: 395 LQTFRVHEN-LSS--YQSMLSNNLCPLLHLESLKLVDERTIALQPSS---IVLPEYQFPP 448
+Q + N + + + + ++ LE L L +
Sbjct: 146 VQYLDLKLNEIDTVNFAELAAS----SDTLEHLNL----------QYNFIYDVKGQVVFA 191
Query: 449 RLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMF 508
+L L LS+ +L + P + + + L+ N + + +L+ L+
Sbjct: 192 KLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKL--VLIEKALRFSQNLEHFDLRGNG 248
Query: 509 W----LEEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLE 551
+ L ++ +N +++++ L EE + +L
Sbjct: 249 FHCGTLRDFFSKN---QRVQTVAKQTVKKLTGQNEEECTVPTLGHYG 292
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 1e-04
Identities = 43/225 (19%), Positives = 64/225 (28%), Gaps = 32/225 (14%)
Query: 278 KFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIH 337
+ L L +L P L L L S + L L ++ I
Sbjct: 98 QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157
Query: 338 HT------PDEIWKMNELRHL----NFGSITLPAHPGKCCSSLENLNFISVLH-----PS 382
+++ L L N C L +++ + PS
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS 217
Query: 383 SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLL-HLESLKLVDERTIALQPSSIVL 441
+ LQ + N S + C L SL L S L
Sbjct: 218 GVCSALAAARVQLQGLDLSHN--SLRDAAGAPSCDWPSQLNSLNL----------SFTGL 265
Query: 442 PE--YQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSF 484
+ P +L L LS L P+ ++LP + L LK N F
Sbjct: 266 KQVPKGLPAKLSVLDLSYNRLDR--NPSPDELPQVGNLSLKGNPF 308
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 34/216 (15%), Positives = 65/216 (30%), Gaps = 10/216 (4%)
Query: 280 LRLLDLGTIVLDEYPAGI-NPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHH 338
LR+L L + + L+YL ++ L+++ + SL LD+ ++
Sbjct: 78 LRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDV 135
Query: 339 TPD--EIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPSSCTQDILGRLPSLQ 396
P E + +L L + + L + L L
Sbjct: 136 LPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPN 195
Query: 397 TFRVHENLSSYQSMLSNNLCPLLHLESLKL--VDERTIALQPSSIVLPEYQFPPRLIELS 454
T +H + L L+L + Q L E P L+ ++
Sbjct: 196 TTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVT 255
Query: 455 LSNTELKYDPMPALEKL---PHLRVLKLKKNSFFGR 487
L + E + L + + L + + R
Sbjct: 256 LQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITER 291
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 5e-04
Identities = 50/353 (14%), Positives = 96/353 (27%), Gaps = 58/353 (16%)
Query: 214 STLRADRSLEDFKRISVCRTVTNFDSWEHFDTYLHSFLHLTVERKHLSE-DVFTLEYCNA 272
S R ++ + R F + L + + +
Sbjct: 49 SETREHVTMALCYTATPDRLSRRFPNLRSLK--LKGKPRAAMFNLIPENWGGYVTPWVTE 106
Query: 273 ICKWFKFLRLLDL-GTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLS------ 325
I + L+ + IV D L + L+ L C+ +
Sbjct: 107 ISNNLRQLKSVHFRRMIVSDL--------DLDRLAKARADDLETLKLDKCSGFTTDGLLS 158
Query: 326 -------LHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISV 378
+ TL M S + L L + +SLE LN
Sbjct: 159 IVTHCRKIKTLLMEESSFSEKDGKW-----LHEL-----------AQHNTSLEVLN---- 198
Query: 379 LHPSSCTQ-------DILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERT 431
+ + + I SL + +V + L L ++
Sbjct: 199 FYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIG 258
Query: 432 IALQPSSIVLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVC 491
+ + ++V FP +L L LS P+ +R L L
Sbjct: 259 MPEKYMNLV-----FPRKLCRLGLSYMGPNEMPILF-PFAAQIRKLDLLYALLETEDHCT 312
Query: 492 SSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEELWRI 544
P+L+V+ +++ + +L+ L I A + + +E +
Sbjct: 313 LIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLV 365
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 581 | |||
| 2a5y_B | 549 | CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis | 99.98 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.96 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.96 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.95 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.95 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.95 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.95 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.95 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.95 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.95 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.95 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.95 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.94 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.94 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.94 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.94 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.94 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.94 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.94 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.94 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.94 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.94 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.94 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.93 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.93 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.93 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.93 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.93 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.93 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.92 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.92 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.92 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.92 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.92 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.92 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.92 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.92 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.92 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 99.92 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.92 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.92 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.92 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.91 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.91 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.91 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.91 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.9 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.9 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.9 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.89 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.88 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.88 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.88 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.88 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.87 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.87 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.86 | |
| 1z6t_A | 591 | APAF-1, apoptotic protease activating factor 1; ca | 99.86 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.86 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.85 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.85 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.85 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.85 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.85 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.85 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.84 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.84 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.83 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.83 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.83 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.82 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.8 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.8 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.79 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.79 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.78 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.78 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.78 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.78 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.77 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.77 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.76 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.76 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.76 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.75 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.74 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.74 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.74 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.73 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.72 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.72 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.71 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.7 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.7 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.69 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.69 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.68 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.67 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.67 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.65 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.63 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.62 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.61 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.61 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.6 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.59 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.59 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.59 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.56 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.56 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.55 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.54 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.49 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.48 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.48 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.47 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.47 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.46 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.45 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.44 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.43 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.43 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.42 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.37 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.36 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.36 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.36 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.36 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.35 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.34 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.33 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.31 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.3 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.27 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.23 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.22 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.19 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.18 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.12 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.12 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.12 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.05 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.0 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.0 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.88 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 98.88 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.72 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.68 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.66 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.65 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.6 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.52 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.52 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.47 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.29 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.2 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.18 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.11 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.02 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.94 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 97.94 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.72 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.68 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 97.62 | |
| 1w5s_A | 412 | Origin recognition complex subunit 2 ORC2; replica | 97.14 | |
| 2qen_A | 350 | Walker-type ATPase; unknown function; HET: ADP; 2. | 96.56 | |
| 2fna_A | 357 | Conserved hypothetical protein; structural genomic | 96.07 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 95.08 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 94.98 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 94.85 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 94.19 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 94.18 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 93.22 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 92.99 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 92.57 | |
| 1hqc_A | 324 | RUVB; extended AAA-ATPase domain, complex with nuc | 87.69 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 86.73 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 81.8 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 80.94 |
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=8.1e-33 Score=297.23 Aligned_cols=192 Identities=18% Similarity=0.182 Sum_probs=153.1
Q ss_pred hHHHHHHHHHhcCc-eEEEEEEcCCChhHHHHHHhhCCCCCCCCEEEEeCCC-------------h-------HHHHHhc
Q 035853 2 EQRKTALHDYLRNK-RYLIVFEDVISSDVWDYIGKALPDHQNGSRVLAMLTC-------------S-------DEIFSLC 60 (581)
Q Consensus 2 ~~l~~~l~~~L~~k-r~LlVLDDv~~~~~~~~l~~~~~~~~~gs~iivTtr~-------------~-------~~~~~Lf 60 (581)
++++..+++.|++| ||||||||||+.+++ .+.. .+||+||||||+ | +|||+||
T Consensus 229 ~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf 302 (549)
T 2a5y_B 229 VVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFL 302 (549)
T ss_dssp HHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHH
Confidence 35789999999996 999999999999865 2222 179999999997 1 9999999
Q ss_pred -cc-ccCccccCCC-CChh-hHHhhcCCcchhhhhhccc-c--ceeccc-c---cccc--c--ccceeccccCchhhhHH
Q 035853 61 -RL-ENGEMIHLDS-VPAG-PLRAKYQERPLVFLYYGRN-S--LVENMR-L---TWRI--Q--KWPLLFSIVELPQHLKL 125 (581)
Q Consensus 61 -~~-f~~~~~~~~~-~~~~-~i~~~c~GlPLal~~~g~~-t--~~~~~~-~---~~~~--~--~~~L~~sY~~L~~~lk~ 125 (581)
++ |+.. ..++ ++++ +|+++|+|+||||+++|+. . .|+... + .|.. . .++|++||++||+++|.
T Consensus 303 ~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w~~~~~l~~~l~~~~~~~i~~~l~~Sy~~L~~~lk~ 380 (549)
T 2a5y_B 303 EAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQR 380 (549)
T ss_dssp HHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCSSTTCCCSSSSSSSHHHHHHH
T ss_pred HHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccchHHHHHHhHHHhhcccHHHHHHHHhcccccccHHHHH
Confidence 77 7642 2234 7899 9999999999999999998 1 111110 0 1211 1 78999999999999999
Q ss_pred HHh-----------hhcccCCCceechHHHHHHHHhc--CCCCC-----ChHHHHHHHHHHHHhCCceeeeeccCCCCEe
Q 035853 126 CCL-----------YLSAFRDAFEIATKELYQLWIAE--GFIPD-----NSEKTAEEYLEQLISRGFIKVKKRRAGGTIK 187 (581)
Q Consensus 126 cFl-----------~~a~Fp~~~~i~~~~Li~~w~a~--g~i~~-----~~~~~~~~~~~~L~~~~ll~~~~~~~~g~~~ 187 (581)
||+ |||+||+|+.|+ +++|+|+ ||+.. ..+++++ ||++|+++||++....+ ...
T Consensus 381 ~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~---~~~ 452 (549)
T 2a5y_B 381 CVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRM---PVL 452 (549)
T ss_dssp HHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECS---SSC
T ss_pred HHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCC---Cce
Confidence 999 999999999998 8999999 99975 4788888 99999999999988743 346
Q ss_pred EEEeChHHHHHHHHhccccccc
Q 035853 188 TCYISFITRGMLVLVAEFVEFV 209 (581)
Q Consensus 188 ~~~mHdli~dl~~~i~~~e~~~ 209 (581)
+|+|||+||++|++++.+++..
T Consensus 453 ~~~mHdlv~~~a~~~~~~~~~~ 474 (549)
T 2a5y_B 453 TFKIDHIIHMFLKHVVDAQTIA 474 (549)
T ss_dssp EEECCHHHHHHHHTTSCTHHHH
T ss_pred EEEeChHHHHHHHHHHHHHHHH
Confidence 7999999999999999887653
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8e-30 Score=285.86 Aligned_cols=108 Identities=16% Similarity=0.119 Sum_probs=56.2
Q ss_pred CCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccCcccccccceEeeccCcCCCCCcccccCCCCccEE
Q 035853 471 LPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKL 550 (581)
Q Consensus 471 l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L 550 (581)
+++|+.|++++|.+.+.. |..++.+++|+.|++++|.....+|..++.+++|+.|++++|.....+|..+..+++|++|
T Consensus 631 l~~L~~LdLs~N~l~g~i-p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 709 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYI-PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709 (768)
T ss_dssp SBCCCEEECCSSCCBSCC-CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred cccccEEECcCCcccccC-CHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE
Confidence 345555555555554443 3445556666666666664444666666666677777777666555666666677777777
Q ss_pred EeeCCC---------------------------HHHHHHHhhccCCcce-eEEeccCCC
Q 035853 551 ELWWPR---------------------------FELRETLRKFEDREQY-DIQIYPYGM 581 (581)
Q Consensus 551 ~l~~c~---------------------------~~~~~~~~~~~~~~~~-~i~hip~~~ 581 (581)
++++|+ .-+ ..|.. ..+++| +|+|+|.++
T Consensus 710 ~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l-~~C~~-~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 710 DLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL-PRCDP-SNADGYAHHQRSHHHH 766 (768)
T ss_dssp ECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTS-CCCCS-CC--------------
T ss_pred ECcCCcccccCCCchhhccCCHHHhcCCchhcCCCC-cCCCC-CccCCCCCCCCccccC
Confidence 766652 001 14455 678889 999999764
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-27 Score=251.20 Aligned_cols=301 Identities=19% Similarity=0.159 Sum_probs=251.0
Q ss_pred cCCCcccccCCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccC-CCcccCcCCCcEEeccCCCC
Q 035853 235 TNFDSWEHFDTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEY-PAGINPLLLLKYLVLNIPSL 313 (581)
Q Consensus 235 ~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr~L~L~~~~i 313 (581)
....++..+.++++.|.+.++.... .. ...|.++++|++|+|++|.++.+ |..++++++|++|++++|.+
T Consensus 22 ~l~~ip~~~~~~l~~L~L~~n~l~~------~~---~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 92 (477)
T 2id5_A 22 RFVAVPEGIPTETRLLDLGKNRIKT------LN---QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92 (477)
T ss_dssp CCSSCCSCCCTTCSEEECCSSCCCE------EC---TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CcCcCCCCCCCCCcEEECCCCccce------EC---HhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence 3344565557899999999988754 22 46889999999999999999854 78899999999999999999
Q ss_pred cccChh-hhcccCCcEEEecCCccccc-chhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC-Ccc-hhhh
Q 035853 314 KHLPSS-LCNLLSLHTLDMRWSYIHHT-PDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS-SCT-QDIL 389 (581)
Q Consensus 314 ~~lp~~-i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~-~~~l 389 (581)
+.+|.. ++++++|++|++++|.+..+ |..+..+++|++|++++|.+....+..++.+++|+.|++.++. ..+ +..+
T Consensus 93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 172 (477)
T 2id5_A 93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL 172 (477)
T ss_dssp CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHH
T ss_pred CccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHh
Confidence 988864 78999999999999988766 5568899999999999999987777889999999999999998 444 4568
Q ss_pred CCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC-CCCCCCCccEEEEeeccCCCCCccc
Q 035853 390 GRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP-EYQFPPRLIELSLSNTELKYDPMPA 467 (581)
Q Consensus 390 ~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp-~~~~l~~L~~L~L~~~~l~~~~~~~ 467 (581)
.++++|+.|+++++. .....+..+..+++|+.|+++++.. + .+| ......+|++|++++|.++......
T Consensus 173 ~~l~~L~~L~l~~n~--i~~~~~~~~~~l~~L~~L~l~~~~~-------~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 243 (477)
T 2id5_A 173 SHLHGLIVLRLRHLN--INAIRDYSFKRLYRLKVLEISHWPY-------LDTMTPNCLYGLNLTSLSITHCNLTAVPYLA 243 (477)
T ss_dssp TTCTTCCEEEEESCC--CCEECTTCSCSCTTCCEEEEECCTT-------CCEECTTTTTTCCCSEEEEESSCCCSCCHHH
T ss_pred cccCCCcEEeCCCCc--CcEeChhhcccCcccceeeCCCCcc-------ccccCcccccCccccEEECcCCcccccCHHH
Confidence 999999999999996 5555566788999999999998441 2 566 5556679999999999987666567
Q ss_pred ccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCccccc-ccCcccccccceEeeccCcCCCCCcc-cccCCC
Q 035853 468 LEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEW-TMENDAMPKLESLIINPCAYLKILPE-ELWRIK 545 (581)
Q Consensus 468 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~ 545 (581)
++.+++|+.|++++|.+.+.. +..+..+++|+.|++++|. +..+ |..+..+++|+.|++++|. +..+|. .+..++
T Consensus 244 ~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~ 320 (477)
T 2id5_A 244 VRHLVYLRFLNLSYNPISTIE-GSMLHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEESVFHSVG 320 (477)
T ss_dssp HTTCTTCCEEECCSSCCCEEC-TTSCTTCTTCCEEECCSSC-CSEECTTTBTTCTTCCEEECCSSC-CSCCCGGGBSCGG
T ss_pred hcCccccCeeECCCCcCCccC-hhhccccccCCEEECCCCc-cceECHHHhcCcccCCEEECCCCc-CceeCHhHcCCCc
Confidence 999999999999998876433 4457889999999999985 5544 6778899999999999996 555554 578899
Q ss_pred CccEEEeeCCC
Q 035853 546 SLTKLELWWPR 556 (581)
Q Consensus 546 ~L~~L~l~~c~ 556 (581)
+|++|++++||
T Consensus 321 ~L~~L~l~~N~ 331 (477)
T 2id5_A 321 NLETLILDSNP 331 (477)
T ss_dssp GCCEEECCSSC
T ss_pred ccCEEEccCCC
Confidence 99999999887
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-28 Score=271.75 Aligned_cols=270 Identities=19% Similarity=0.148 Sum_probs=199.2
Q ss_pred cCCceeEEEecCcccc-cCCCcccCc-CCCcEEeccCCCCc-ccChhhhcccCCcEEEecCCccc-ccchh-hhcCCCCc
Q 035853 276 WFKFLRLLDLGTIVLD-EYPAGINPL-LLLKYLVLNIPSLK-HLPSSLCNLLSLHTLDMRWSYIH-HTPDE-IWKMNELR 350 (581)
Q Consensus 276 ~~~~Lr~L~L~~~~l~-~lp~~i~~l-~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~l~-~lp~~-i~~l~~L~ 350 (581)
.+++|++|++++|.++ .+|..+... ++|++|++++|.+. .+|..++++++|++|++++|.+. .+|.. ++++++|+
T Consensus 267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~ 346 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346 (768)
T ss_dssp CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCC
T ss_pred ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCC
Confidence 3444444444444444 455555443 66666666666665 55666666666666666666553 56654 56666666
Q ss_pred EeecCCcccCCCCCCccCCCC-CCcEeceecCC--CcchhhhCC--CCCCCeEEEeeecccchhchhhhcCCCCCCCEEE
Q 035853 351 HLNFGSITLPAHPGKCCSSLE-NLNFISVLHPS--SCTQDILGR--LPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLK 425 (581)
Q Consensus 351 ~L~l~~~~~~~~~p~~i~~l~-~L~~L~l~~~~--~~~~~~l~~--l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~ 425 (581)
+|++++|.+.+.+|..+.+++ +|+.|++.++. ...+..+.. +++|+.|++++|. .....|..+..+++|+.|+
T Consensus 347 ~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~--l~~~~p~~l~~l~~L~~L~ 424 (768)
T 3rgz_A 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG--FTGKIPPTLSNCSELVSLH 424 (768)
T ss_dssp EEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSE--EEEECCGGGGGCTTCCEEE
T ss_pred EEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCc--cccccCHHHhcCCCCCEEE
Confidence 666666666656666666665 66666666665 344455544 6677777777775 5556777777788888888
Q ss_pred eecCCcccCCcccc--cCC-CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEE
Q 035853 426 LVDERTIALQPSSI--VLP-EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVM 502 (581)
Q Consensus 426 l~~~~~i~L~~l~l--~lp-~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L 502 (581)
++++. + .+| .++.+++|++|++++|.+.+..+..++.+++|++|++++|.+.+.. +..+..+++|+.|
T Consensus 425 Ls~N~--------l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L 495 (768)
T 3rgz_A 425 LSFNY--------LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI-PSGLSNCTNLNWI 495 (768)
T ss_dssp CCSSE--------EESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC-CGGGGGCTTCCEE
T ss_pred CcCCc--------ccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcC-CHHHhcCCCCCEE
Confidence 87744 5 567 7888999999999999988888889999999999999998887655 5567889999999
Q ss_pred EecCCCcccccccCcccccccceEeeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 503 HLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 503 ~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
++++|.....+|..++.+++|+.|++++|.....+|..+..+++|+.|++++|+
T Consensus 496 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred EccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 999997666889999999999999999998878899999999999999999885
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-27 Score=258.17 Aligned_cols=131 Identities=18% Similarity=0.155 Sum_probs=93.9
Q ss_pred CCCCeeEEEEEecccCCCccc-cc--CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccC-CCc
Q 035853 221 SLEDFKRISVCRTVTNFDSWE-HF--DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEY-PAG 296 (581)
Q Consensus 221 ~~~~~r~lsl~~~~~~~~~~~-~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~ 296 (581)
.+..++++.+. +.....++. .+ +++|++|.+.++.... .. +..|.++++|++|++++|.++.+ |..
T Consensus 30 ~~~~l~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------i~---~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 99 (606)
T 3vq2_A 30 IPSSTKNIDLS-FNPLKILKSYSFSNFSELQWLDLSRCEIET------IE---DKAWHGLHHLSNLILTGNPIQSFSPGS 99 (606)
T ss_dssp SCTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECTTCCCCE------EC---TTTTTTCTTCCEEECTTCCCCCCCTTS
T ss_pred CCCCcCEEECC-CCCcCEeChhhccCCccCcEEeCCCCcccc------cC---HHHhhchhhcCEeECCCCcccccChhh
Confidence 55778888887 544433333 44 7888888888776543 22 45677888888888888887755 677
Q ss_pred ccCcCCCcEEeccCCCCcccC-hhhhcccCCcEEEecCCccc--ccchhhhcCCCCcEeecCCcccCC
Q 035853 297 INPLLLLKYLVLNIPSLKHLP-SSLCNLLSLHTLDMRWSYIH--HTPDEIWKMNELRHLNFGSITLPA 361 (581)
Q Consensus 297 i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~ 361 (581)
++++++|++|++++|.+..+| ..++++++|++|++++|.+. .+|..++++++|++|++++|.+.+
T Consensus 100 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 100 FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp STTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred cCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence 888888888888888877655 56777888888888888665 467777778888888777776543
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=252.50 Aligned_cols=314 Identities=17% Similarity=0.134 Sum_probs=234.9
Q ss_pred CCCCeeEEEEEecccCCCc-cccc--CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCccccc-CCCc
Q 035853 221 SLEDFKRISVCRTVTNFDS-WEHF--DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDE-YPAG 296 (581)
Q Consensus 221 ~~~~~r~lsl~~~~~~~~~-~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~-lp~~ 296 (581)
.+..++++.+. +...... +..+ +++|++|.+.++.... ... ...|..+++|++|++++|.++. .|..
T Consensus 28 l~~~l~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~-----~i~---~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 98 (455)
T 3v47_A 28 LPAHVNYVDLS-LNSIAELNETSFSRLQDLQFLKVEQQTPGL-----VIR---NNTFRGLSSLIILKLDYNQFLQLETGA 98 (455)
T ss_dssp CCTTCCEEECC-SSCCCEECTTTTSSCTTCCEEECCCCSTTC-----EEC---TTTTTTCTTCCEEECTTCTTCEECTTT
T ss_pred CCCccCEEEec-CCccCcCChhHhccCccccEEECcCCcccc-----eEC---cccccccccCCEEeCCCCccCccChhh
Confidence 55778889888 5444333 4445 8899999998886532 122 4678889999999999999884 4778
Q ss_pred ccCcCCCcEEeccCCCCcc-cChh--hhcccCCcEEEecCCccccc-chh-hhcCCCCcEeecCCcccCCCCCCccCCC-
Q 035853 297 INPLLLLKYLVLNIPSLKH-LPSS--LCNLLSLHTLDMRWSYIHHT-PDE-IWKMNELRHLNFGSITLPAHPGKCCSSL- 370 (581)
Q Consensus 297 i~~l~~Lr~L~L~~~~i~~-lp~~--i~~L~~L~~L~l~~~~l~~l-p~~-i~~l~~L~~L~l~~~~~~~~~p~~i~~l- 370 (581)
++++++|++|++++|.++. .|.. ++++++|++|++++|.+..+ |.. +.++++|++|++++|.+.+..|..+..+
T Consensus 99 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 178 (455)
T 3v47_A 99 FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQ 178 (455)
T ss_dssp TTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGT
T ss_pred ccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccc
Confidence 8899999999999998874 4544 88899999999999988776 544 7889999999999998887777666655
Q ss_pred -CCCcEeceecCC-Ccch---------hhhCCCCCCCeEEEeeecccchhchhhhcCC----------------------
Q 035853 371 -ENLNFISVLHPS-SCTQ---------DILGRLPSLQTFRVHENLSSYQSMLSNNLCP---------------------- 417 (581)
Q Consensus 371 -~~L~~L~l~~~~-~~~~---------~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~---------------------- 417 (581)
.+|+.|++.++. ...+ ..+..+++|+.|+++++. .....+..+..
T Consensus 179 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 256 (455)
T 3v47_A 179 GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG--FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF 256 (455)
T ss_dssp TCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC--CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT
T ss_pred cccccccccccCcccccchhhccccccccccccceeeeEecCCCc--ccccchhhhhccccccceeeEeecccccccccc
Confidence 567777766665 2211 113355677888887775 33333332211
Q ss_pred -----------------CCCCCEEEeecCCcccCCcccc--cCC-CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeE
Q 035853 418 -----------------LLHLESLKLVDERTIALQPSSI--VLP-EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVL 477 (581)
Q Consensus 418 -----------------~~~L~~L~l~~~~~i~L~~l~l--~lp-~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L 477 (581)
.++|+.|+++++. + ..| +++.+++|++|++++|.+.+..+..++.+++|++|
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~--------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 328 (455)
T 3v47_A 257 GHTNFKDPDNFTFKGLEASGVKTCDLSKSK--------IFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL 328 (455)
T ss_dssp TCCSSCCCCTTTTGGGTTSCCCEEECCSSC--------CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred chhhhccCcccccccccccCceEEEecCcc--------ccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEE
Confidence 1345555555533 5 346 88999999999999999887777789999999999
Q ss_pred EEecCcccCceeeeCCCCCCCCcEEEecCCCccccc-ccCcccccccceEeeccCcCCCCCcc-cccCCCCccEEEeeCC
Q 035853 478 KLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEW-TMENDAMPKLESLIINPCAYLKILPE-ELWRIKSLTKLELWWP 555 (581)
Q Consensus 478 ~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c 555 (581)
++++|.+.+. .+..+..+++|+.|++++|. +..+ |..+..+++|++|++++|. +..+|. .+..+++|++|++++|
T Consensus 329 ~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 329 NLSQNFLGSI-DSRMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp ECCSSCCCEE-CGGGGTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred ECCCCccCCc-ChhHhcCcccCCEEECCCCc-ccccChhhccccccccEEECCCCc-cccCCHhHhccCCcccEEEccCC
Confidence 9999887443 35567889999999999985 5555 7788999999999999997 445654 5689999999999987
Q ss_pred C
Q 035853 556 R 556 (581)
Q Consensus 556 ~ 556 (581)
+
T Consensus 406 ~ 406 (455)
T 3v47_A 406 P 406 (455)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-27 Score=259.26 Aligned_cols=308 Identities=16% Similarity=0.176 Sum_probs=257.9
Q ss_pred CCCeeEEEEEecccCCCccccc--CCcccEEEEeccc-ccccccchhhhhhhHHHhccC------CceeEEEecCccccc
Q 035853 222 LEDFKRISVCRTVTNFDSWEHF--DTYLHSFLHLTVE-RKHLSEDVFTLEYCNAICKWF------KFLRLLDLGTIVLDE 292 (581)
Q Consensus 222 ~~~~r~lsl~~~~~~~~~~~~~--~~~Lr~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~------~~Lr~L~L~~~~l~~ 292 (581)
....+++.+..+.....++..+ +++|+.|.+.++. ... ... +..+..+ ++|++|++++|.++.
T Consensus 248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~-----~~l---p~~~~~L~~~~~l~~L~~L~L~~n~l~~ 319 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG-----EQL---KDDWQALADAPVGEKIQIIYIGYNNLKT 319 (636)
T ss_dssp CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCH-----HHH---HHHHHHHHHSGGGGTCCEEECCSSCCSS
T ss_pred cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCcc-----ccc---hHHHHhhhccccCCCCCEEECCCCcCCc
Confidence 4678899999444455567766 9999999999987 421 022 4555554 999999999999999
Q ss_pred CCC--cccCcCCCcEEeccCCCCc-ccChhhhcccCCcEEEecCCcccccchhhhcCCC-CcEeecCCcccCCCCCCccC
Q 035853 293 YPA--GINPLLLLKYLVLNIPSLK-HLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNE-LRHLNFGSITLPAHPGKCCS 368 (581)
Q Consensus 293 lp~--~i~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~-L~~L~l~~~~~~~~~p~~i~ 368 (581)
+|. .++++++|++|++++|.+. .+| .++++++|++|++++|.+..+|..++.+++ |++|++++|.+. .+|..++
T Consensus 320 ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~ 397 (636)
T 4eco_A 320 FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFD 397 (636)
T ss_dssp CCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCC
T ss_pred cCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhh
Confidence 998 8999999999999999999 999 999999999999999999999999999999 999999999998 8898887
Q ss_pred CCC--CCcEeceecCC--CcchhhhC-------CCCCCCeEEEeeecccchhchhhh-cCCCCCCCEEEeecCCcccCCc
Q 035853 369 SLE--NLNFISVLHPS--SCTQDILG-------RLPSLQTFRVHENLSSYQSMLSNN-LCPLLHLESLKLVDERTIALQP 436 (581)
Q Consensus 369 ~l~--~L~~L~l~~~~--~~~~~~l~-------~l~~L~~L~l~~~~~~~~~~l~~~-l~~~~~L~~L~l~~~~~i~L~~ 436 (581)
.++ +|+.|++.++. ...+..+. .+++|+.|++++|. .. .+|.. +..+++|+.|+++++.
T Consensus 398 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~--l~-~lp~~~~~~l~~L~~L~Ls~N~------ 468 (636)
T 4eco_A 398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ--IS-KFPKELFSTGSPLSSINLMGNM------ 468 (636)
T ss_dssp TTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC--CC-SCCTHHHHTTCCCSEEECCSSC------
T ss_pred hcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc--cC-cCCHHHHccCCCCCEEECCCCC------
Confidence 765 89999999998 55666676 78899999999996 33 55544 4568999999999866
Q ss_pred ccc-cCC-CC-CC-------CCCccEEEEeeccCCCCCccccc--CCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEe
Q 035853 437 SSI-VLP-EY-QF-------PPRLIELSLSNTELKYDPMPALE--KLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHL 504 (581)
Q Consensus 437 l~l-~lp-~~-~~-------l~~L~~L~L~~~~l~~~~~~~l~--~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l 504 (581)
+ .+| .. .. +++|++|++++|.++ ..+..+. .+++|+.|++++|.+.+ ++..+..+++|+.|++
T Consensus 469 --l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~L 543 (636)
T 4eco_A 469 --LTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK--FPTQPLNSSTLKGFGI 543 (636)
T ss_dssp --CSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCSSCCEEEC
T ss_pred --CCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC--cChhhhcCCCCCEEEC
Confidence 6 777 32 22 339999999999987 5666776 99999999999999876 4667778999999999
Q ss_pred cC------CCcccccccCcccccccceEeeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 505 KS------MFWLEEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 505 ~~------~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
++ |.....+|..++.+++|+.|++++|.. +.+|..+. ++|+.|++++|+
T Consensus 544 s~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~ 598 (636)
T 4eco_A 544 RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNP 598 (636)
T ss_dssp CSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCT
T ss_pred CCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCC
Confidence 54 444667888999999999999999985 88998765 899999999996
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.1e-27 Score=241.24 Aligned_cols=286 Identities=19% Similarity=0.195 Sum_probs=204.5
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCC-CcccCcCCCcEEeccCCCCcccC-hhhh
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYP-AGINPLLLLKYLVLNIPSLKHLP-SSLC 321 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp-~~i~ 321 (581)
.++++.|.+.++.... .+ ...+..+++|++|+++++.++.++ ..++.+++|++|++++|.+..+| ..++
T Consensus 44 l~~l~~l~l~~~~l~~------l~---~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 114 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRK------LP---AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 114 (390)
T ss_dssp GCCCSEEEEESCEESE------EC---THHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cCCceEEEecCCchhh------CC---hhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhc
Confidence 5677777777766533 22 455677777777777777777544 36777777777777777777554 3467
Q ss_pred cccCCcEEEecCCcccccchhh-hcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEE
Q 035853 322 NLLSLHTLDMRWSYIHHTPDEI-WKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFR 399 (581)
Q Consensus 322 ~L~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~ 399 (581)
++++|++|++++|.+..+|..+ .++++|++|++++|.+.+..|..++.+++|++|++.++. ... .++.+++|+.|+
T Consensus 115 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L~ 192 (390)
T 3o6n_A 115 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHAN 192 (390)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--CGGGCTTCSEEE
T ss_pred CCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc--ccccccccceee
Confidence 7777777777777777777664 667777777777777765555567777777777777766 222 233455555555
Q ss_pred Eeeeccc----------------chhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCCCCCCCCCccEEEEeeccCCC
Q 035853 400 VHENLSS----------------YQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLPEYQFPPRLIELSLSNTELKY 462 (581)
Q Consensus 400 l~~~~~~----------------~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp~~~~l~~L~~L~L~~~~l~~ 462 (581)
++++.-. ....++. ...++|+.|+++++. + ..+++..+++|++|++++|.+.+
T Consensus 193 l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~--------l~~~~~l~~l~~L~~L~Ls~n~l~~ 262 (390)
T 3o6n_A 193 VSYNLLSTLAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNN--------LTDTAWLLNYPGLVEVDLSYNELEK 262 (390)
T ss_dssp CCSSCCSEEECCSSCSEEECCSSCCCEEEC--CCCSSCCEEECCSSC--------CCCCGGGGGCTTCSEEECCSSCCCE
T ss_pred cccccccccCCCCcceEEECCCCeeeeccc--cccccccEEECCCCC--------CcccHHHcCCCCccEEECCCCcCCC
Confidence 5554300 1111121 123456666666543 4 44477889999999999999887
Q ss_pred CCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccCcccccccceEeeccCcCCCCCccccc
Q 035853 463 DPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEELW 542 (581)
Q Consensus 463 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~ 542 (581)
..+..++.+++|+.|++++|.+.+. +.....+++|+.|++++| .+..+|..+..+++|+.|++++|+ +..+| +.
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~--~~ 336 (390)
T 3o6n_A 263 IMYHPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLK--LS 336 (390)
T ss_dssp EESGGGTTCSSCCEEECCSSCCCEE--ECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCC--CC
T ss_pred cChhHccccccCCEEECCCCcCccc--CcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCc-cceeC--ch
Confidence 7778899999999999998887653 455678999999999998 677888888899999999999997 55565 67
Q ss_pred CCCCccEEEeeCCC
Q 035853 543 RIKSLTKLELWWPR 556 (581)
Q Consensus 543 ~l~~L~~L~l~~c~ 556 (581)
.+++|++|++++||
T Consensus 337 ~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 337 THHTLKNLTLSHND 350 (390)
T ss_dssp TTCCCSEEECCSSC
T ss_pred hhccCCEEEcCCCC
Confidence 89999999999998
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=262.24 Aligned_cols=311 Identities=16% Similarity=0.168 Sum_probs=247.1
Q ss_pred CCCCeeEEEEEecccCCC------------------ccccc----CCcccEEEEecccccccccchhhhhhhHHHhccCC
Q 035853 221 SLEDFKRISVCRTVTNFD------------------SWEHF----DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFK 278 (581)
Q Consensus 221 ~~~~~r~lsl~~~~~~~~------------------~~~~~----~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (581)
...+.+.+.+. +..... ++..+ +++|++|.+.++.... .. +..+.+++
T Consensus 204 ~l~~L~~L~Ls-~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~------~~---p~~l~~l~ 273 (636)
T 4eco_A 204 RLTKLRQFYMG-NSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT------KL---PTFLKALP 273 (636)
T ss_dssp GCTTCCEEEEE-SCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS------SC---CTTTTTCS
T ss_pred cccCCCEEECc-CCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc------cC---hHHHhcCC
Confidence 45678888888 544443 45443 6888999998886543 22 57788889
Q ss_pred ceeEEEecCcc-cc--cCCCcccCc------CCCcEEeccCCCCcccCh--hhhcccCCcEEEecCCccc-ccchhhhcC
Q 035853 279 FLRLLDLGTIV-LD--EYPAGINPL------LLLKYLVLNIPSLKHLPS--SLCNLLSLHTLDMRWSYIH-HTPDEIWKM 346 (581)
Q Consensus 279 ~Lr~L~L~~~~-l~--~lp~~i~~l------~~Lr~L~L~~~~i~~lp~--~i~~L~~L~~L~l~~~~l~-~lp~~i~~l 346 (581)
+|++|++++|. ++ .+|..++.+ ++|++|++++|.++.+|. .++++++|++|++++|.+. .+| .++.+
T Consensus 274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l 352 (636)
T 4eco_A 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSE 352 (636)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEE
T ss_pred CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCC
Confidence 99999999998 77 488777776 899999999998888888 8889999999999999877 888 78888
Q ss_pred CCCcEeecCCcccCCCCCCccCCCCC-CcEeceecCC-CcchhhhCCCC--CCCeEEEeeecccchhchhhhcC------
Q 035853 347 NELRHLNFGSITLPAHPGKCCSSLEN-LNFISVLHPS-SCTQDILGRLP--SLQTFRVHENLSSYQSMLSNNLC------ 416 (581)
Q Consensus 347 ~~L~~L~l~~~~~~~~~p~~i~~l~~-L~~L~l~~~~-~~~~~~l~~l~--~L~~L~l~~~~~~~~~~l~~~l~------ 416 (581)
++|++|++++|.+. .+|..++.+++ |++|++.++. ..++..+..++ +|+.|++++|. .....|..+.
T Consensus 353 ~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~--l~~~~p~~l~~~~~~~ 429 (636)
T 4eco_A 353 IKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNE--IGSVDGKNFDPLDPTP 429 (636)
T ss_dssp EEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSC--TTTTTTCSSCTTCSSC
T ss_pred CCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCc--CCCcchhhhccccccc
Confidence 99999999998887 78888888888 9999998888 66676666554 88999999887 6666777777
Q ss_pred -CCCCCCEEEeecCCcccCCcccc-cCC--CCCCCCCccEEEEeeccCCCCCcccccC-------CCCCCeEEEecCccc
Q 035853 417 -PLLHLESLKLVDERTIALQPSSI-VLP--EYQFPPRLIELSLSNTELKYDPMPALEK-------LPHLRVLKLKKNSFF 485 (581)
Q Consensus 417 -~~~~L~~L~l~~~~~i~L~~l~l-~lp--~~~~l~~L~~L~L~~~~l~~~~~~~l~~-------l~~L~~L~L~~~~~~ 485 (581)
.+.+|+.|+++++. + .+| .+..+++|++|++++|.++......+.. +++|+.|++++|.+.
T Consensus 430 ~~~~~L~~L~Ls~N~--------l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 501 (636)
T 4eco_A 430 FKGINVSSINLSNNQ--------ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT 501 (636)
T ss_dssp CCCCCEEEEECCSSC--------CCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC
T ss_pred ccCCCCCEEECcCCc--------cCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC
Confidence 77789999998866 6 777 3556899999999999887322223332 338999999988887
Q ss_pred CceeeeCCC--CCCCCcEEEecCCCcccccccCcccccccceEeec------cCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 486 GRKLVCSSG--GFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIIN------PCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 486 ~~~~~~~~~--~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~------~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
.++.... .+++|+.|++++| .+..+|..+..+++|+.|+++ +|...+.+|..+..+++|++|++++|.
T Consensus 502 --~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 502 --KLSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577 (636)
T ss_dssp --BCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred --ccChhhhhccCCCcCEEECCCC-CCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc
Confidence 3344454 8999999999998 466689889999999999995 455667889999999999999999997
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-26 Score=236.16 Aligned_cols=299 Identities=16% Similarity=0.148 Sum_probs=235.8
Q ss_pred CCCCeeEEEEEecccCCCccccc-CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccC
Q 035853 221 SLEDFKRISVCRTVTNFDSWEHF-DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINP 299 (581)
Q Consensus 221 ~~~~~r~lsl~~~~~~~~~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~ 299 (581)
....++++.+. +.....++.-. +++|++|.+.++.... .+.+..+++|++|++++|.++.+| .+..
T Consensus 42 ~l~~L~~L~l~-~~~i~~~~~~~~~~~L~~L~l~~n~i~~-----------~~~~~~l~~L~~L~L~~n~i~~~~-~~~~ 108 (347)
T 4fmz_A 42 ELESITKLVVA-GEKVASIQGIEYLTNLEYLNLNGNQITD-----------ISPLSNLVKLTNLYIGTNKITDIS-ALQN 108 (347)
T ss_dssp HHTTCSEEECC-SSCCCCCTTGGGCTTCCEEECCSSCCCC-----------CGGGTTCTTCCEEECCSSCCCCCG-GGTT
T ss_pred hcccccEEEEe-CCccccchhhhhcCCccEEEccCCcccc-----------chhhhcCCcCCEEEccCCcccCch-HHcC
Confidence 34567888888 55544344322 8999999999887643 123889999999999999988775 5889
Q ss_pred cCCCcEEeccCCCCcccChhhhcccCCcEEEecCC-cccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEece
Q 035853 300 LLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWS-YIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISV 378 (581)
Q Consensus 300 l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l 378 (581)
+++|++|++++|.+..+|. +..+++|++|++++| .+..++ .+..+++|++|++++|.+... +. ++.+++|+.|++
T Consensus 109 l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~-~~-~~~l~~L~~L~l 184 (347)
T 4fmz_A 109 LTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDV-TP-IANLTDLYSLSL 184 (347)
T ss_dssp CTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCSEEEC
T ss_pred CCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCc-hh-hccCCCCCEEEc
Confidence 9999999999999988876 889999999999999 455544 488999999999999987643 32 788999999999
Q ss_pred ecCC-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCCCCCCCCCccEEEEe
Q 035853 379 LHPS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLPEYQFPPRLIELSLS 456 (581)
Q Consensus 379 ~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp~~~~l~~L~~L~L~ 456 (581)
.++. ...+. +..+++|+.|+++++. .... +. +..+++|+.|+++++. + .+|.+..+++|++|+++
T Consensus 185 ~~n~l~~~~~-~~~l~~L~~L~l~~n~--l~~~-~~-~~~~~~L~~L~l~~n~--------l~~~~~~~~l~~L~~L~l~ 251 (347)
T 4fmz_A 185 NYNQIEDISP-LASLTSLHYFTAYVNQ--ITDI-TP-VANMTRLNSLKIGNNK--------ITDLSPLANLSQLTWLEIG 251 (347)
T ss_dssp TTSCCCCCGG-GGGCTTCCEEECCSSC--CCCC-GG-GGGCTTCCEEECCSSC--------CCCCGGGTTCTTCCEEECC
T ss_pred cCCccccccc-ccCCCccceeecccCC--CCCC-ch-hhcCCcCCEEEccCCc--------cCCCcchhcCCCCCEEECC
Confidence 9888 44443 7788999999999885 3322 22 6778899999999865 5 55556788999999999
Q ss_pred eccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccCcccccccceEeeccCcCCCC
Q 035853 457 NTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKI 536 (581)
Q Consensus 457 ~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~ 536 (581)
+|.++. .+.+..+++|++|++++|.+.+. ..+..+++|+.|++++|......+..++.+++|+.|++++|+. ..
T Consensus 252 ~n~l~~--~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l-~~ 325 (347)
T 4fmz_A 252 TNQISD--INAVKDLTKLKMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI-TD 325 (347)
T ss_dssp SSCCCC--CGGGTTCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSC-CC
T ss_pred CCccCC--ChhHhcCCCcCEEEccCCccCCC---hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcc-cc
Confidence 998765 36788999999999999887664 2367889999999999964445566678899999999999984 44
Q ss_pred CcccccCCCCccEEEeeCCC
Q 035853 537 LPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 537 lp~~l~~l~~L~~L~l~~c~ 556 (581)
++. +..+++|++|++++|+
T Consensus 326 ~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 326 IRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp CGG-GGGCTTCSEESSSCC-
T ss_pred ccC-hhhhhccceeehhhhc
Confidence 544 7889999999999998
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.5e-27 Score=260.73 Aligned_cols=308 Identities=16% Similarity=0.167 Sum_probs=252.9
Q ss_pred CCCeeEEEEEecccCCCccccc--CCcccEEEEeccc-ccccccchhhhhhhHHHh-------ccCCceeEEEecCcccc
Q 035853 222 LEDFKRISVCRTVTNFDSWEHF--DTYLHSFLHLTVE-RKHLSEDVFTLEYCNAIC-------KWFKFLRLLDLGTIVLD 291 (581)
Q Consensus 222 ~~~~r~lsl~~~~~~~~~~~~~--~~~Lr~L~l~~~~-~~~~~~~~~~~~~~~~~~-------~~~~~Lr~L~L~~~~l~ 291 (581)
....+++.+..+.....++..+ +++|+.|.+.++. ... ... +..+ ..+++|++|++++|.++
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg-----~~i---P~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISA-----AQL---KADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCH-----HHH---HHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCccc-----ccc---hHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 4678999998444455567666 9999999999986 321 012 3333 45569999999999999
Q ss_pred cCCC--cccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCC-CcEeecCCcccCCCCCCccC
Q 035853 292 EYPA--GINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNE-LRHLNFGSITLPAHPGKCCS 368 (581)
Q Consensus 292 ~lp~--~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~-L~~L~l~~~~~~~~~p~~i~ 368 (581)
.+|. .++++++|++|++++|.+..+| .++++++|+.|++++|.+..+|..+..+++ |+.|++++|.+. .+|..++
T Consensus 562 ~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~ 639 (876)
T 4ecn_A 562 EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFN 639 (876)
T ss_dssp BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCC
T ss_pred ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhh
Confidence 9998 8999999999999999999999 899999999999999998899999999999 999999999988 8888887
Q ss_pred CCCC--CcEeceecCC-Ccch----hhhC--CCCCCCeEEEeeecccchhchhhhc-CCCCCCCEEEeecCCcccCCccc
Q 035853 369 SLEN--LNFISVLHPS-SCTQ----DILG--RLPSLQTFRVHENLSSYQSMLSNNL-CPLLHLESLKLVDERTIALQPSS 438 (581)
Q Consensus 369 ~l~~--L~~L~l~~~~-~~~~----~~l~--~l~~L~~L~l~~~~~~~~~~l~~~l-~~~~~L~~L~l~~~~~i~L~~l~ 438 (581)
.++. |+.|+++++. ...+ ..++ .+++|+.|++++|. .. .+|..+ ..+++|+.|+++++.
T Consensus 640 ~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~--L~-~lp~~~~~~l~~L~~L~Ls~N~-------- 708 (876)
T 4ecn_A 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE--IQ-KFPTELFATGSPISTIILSNNL-------- 708 (876)
T ss_dssp TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC--CC-SCCHHHHHTTCCCSEEECCSCC--------
T ss_pred ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc--CC-ccCHHHHccCCCCCEEECCCCc--------
Confidence 7765 9999999987 2222 2233 44589999999995 33 566654 478999999999866
Q ss_pred c-cCC-CCC--------CCCCccEEEEeeccCCCCCccccc--CCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecC
Q 035853 439 I-VLP-EYQ--------FPPRLIELSLSNTELKYDPMPALE--KLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKS 506 (581)
Q Consensus 439 l-~lp-~~~--------~l~~L~~L~L~~~~l~~~~~~~l~--~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~ 506 (581)
+ .+| ++. ++++|+.|+|++|.++ ..+..+. .+++|+.|+|++|.+.+ ++..+..+++|+.|++++
T Consensus 709 L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~--lp~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 709 MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS--FPTQPLNSSQLKAFGIRH 785 (876)
T ss_dssp CSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCTTCCEEECCC
T ss_pred CCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc--cchhhhcCCCCCEEECCC
Confidence 6 777 433 2349999999999987 6667776 99999999999998876 466678999999999987
Q ss_pred ------CCcccccccCcccccccceEeeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 507 ------MFWLEEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 507 ------~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
|.....+|..+..+++|+.|++++|.. ..+|..+. ++|+.|++++|+
T Consensus 786 N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~ 838 (876)
T 4ecn_A 786 QRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNP 838 (876)
T ss_dssp CBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCT
T ss_pred CCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCC
Confidence 444567888899999999999999986 89998765 799999999997
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.9e-27 Score=256.18 Aligned_cols=315 Identities=16% Similarity=0.063 Sum_probs=182.3
Q ss_pred CCCCeeEEEEEecccCCCc-cccc--CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccc-cCCCc
Q 035853 221 SLEDFKRISVCRTVTNFDS-WEHF--DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLD-EYPAG 296 (581)
Q Consensus 221 ~~~~~r~lsl~~~~~~~~~-~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~-~lp~~ 296 (581)
.+..++++.+. +.....+ +..+ +++|++|.+.++.... .. +..|.++++|++|++++|.+. ..|..
T Consensus 31 l~~~l~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~------~~---~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 100 (606)
T 3t6q_A 31 LPNSTECLEFS-FNVLPTIQNTTFSRLINLTFLDLTRCQIYW------IH---EDTFQSQHRLDTLVLTANPLIFMAETA 100 (606)
T ss_dssp SCTTCCEEECT-TCCCSEECTTTSTTCTTCSEEECTTCCCCE------EC---TTTTTTCTTCCEEECTTCCCSEECTTT
T ss_pred CCCcCcEEEcc-CCccCcCChhHhccCccceEEECCCCccce------eC---hhhccCccccCeeeCCCCcccccChhh
Confidence 55677888887 4444333 4444 7888888888776543 22 466778888888888888877 44667
Q ss_pred ccCcCCCcEEeccCCCCccc-ChhhhcccCCcEEEecCCccccc--chhhhcCCCCcEeecCCcccCCCCCCccCCCCCC
Q 035853 297 INPLLLLKYLVLNIPSLKHL-PSSLCNLLSLHTLDMRWSYIHHT--PDEIWKMNELRHLNFGSITLPAHPGKCCSSLENL 373 (581)
Q Consensus 297 i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~l~~l--p~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L 373 (581)
++++++|++|++++|.++.+ |..++++++|++|++++|.+..+ |. +..+++|++|++++|.+.+..|..++.+++|
T Consensus 101 ~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 179 (606)
T 3t6q_A 101 LSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK-GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQA 179 (606)
T ss_dssp TSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCT-TCCCTTCCEEECCSSCCCEECHHHHHTTTTC
T ss_pred hcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCccc-ccCCcccCEEEcccCcccccChhhhhhhccc
Confidence 88888888888888887765 46677888888888888877665 43 3347788888888877765555556677777
Q ss_pred c--EeceecCC-CcchhhhCCCCC----------------------------------------------------CCeE
Q 035853 374 N--FISVLHPS-SCTQDILGRLPS----------------------------------------------------LQTF 398 (581)
Q Consensus 374 ~--~L~l~~~~-~~~~~~l~~l~~----------------------------------------------------L~~L 398 (581)
+ .|++.++. ...+.......+ |+.|
T Consensus 180 ~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L 259 (606)
T 3t6q_A 180 TNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI 259 (606)
T ss_dssp CSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEE
T ss_pred ceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEE
Confidence 6 56555554 222221111122 2222
Q ss_pred EEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC-CCCCCCCccEEEEeeccCCCCCccc---------
Q 035853 399 RVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP-EYQFPPRLIELSLSNTELKYDPMPA--------- 467 (581)
Q Consensus 399 ~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp-~~~~l~~L~~L~L~~~~l~~~~~~~--------- 467 (581)
+++++. .....+..+..+++|+.|+++++. + .+| ++..+++|++|++++|.+....+..
T Consensus 260 ~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~--------l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 329 (606)
T 3t6q_A 260 NLQKHY--FFNISSNTFHCFSGLQELDLTATH--------LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTH 329 (606)
T ss_dssp ECTTCC--CSSCCTTTTTTCTTCSEEECTTSC--------CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSE
T ss_pred EeecCc--cCccCHHHhccccCCCEEeccCCc--------cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCE
Confidence 222221 111222234455555555555533 3 444 4444444444444444443333333
Q ss_pred ----------------ccCCCCCCeEEEecCcccCcee-eeCCCCCCCCcEEEecCCCcccccccCcccccccceEeecc
Q 035853 468 ----------------LEKLPHLRVLKLKKNSFFGRKL-VCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINP 530 (581)
Q Consensus 468 ----------------l~~l~~L~~L~L~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~ 530 (581)
++.+++|++|++++|.+.+... +..+..+++|+.|++++|......|..+..+++|+.|++++
T Consensus 330 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 409 (606)
T 3t6q_A 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF 409 (606)
T ss_dssp EECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTT
T ss_pred EECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCC
Confidence 4455555555555554433221 22345566666666666532223344556666677777766
Q ss_pred CcCCCCCcc-cccCCCCccEEEeeCCC
Q 035853 531 CAYLKILPE-ELWRIKSLTKLELWWPR 556 (581)
Q Consensus 531 c~~l~~lp~-~l~~l~~L~~L~l~~c~ 556 (581)
|......|. .+..+++|++|++++|.
T Consensus 410 n~l~~~~~~~~~~~l~~L~~L~l~~n~ 436 (606)
T 3t6q_A 410 TRLKVKDAQSPFQNLHLLKVLNLSHSL 436 (606)
T ss_dssp CCEECCTTCCTTTTCTTCCEEECTTCC
T ss_pred CcCCCcccchhhhCcccCCEEECCCCc
Confidence 664444333 36667777777777764
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-26 Score=247.39 Aligned_cols=304 Identities=15% Similarity=0.141 Sum_probs=194.1
Q ss_pred CCCCeeEEEEEecccCCCcc-ccc--CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcc
Q 035853 221 SLEDFKRISVCRTVTNFDSW-EHF--DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGI 297 (581)
Q Consensus 221 ~~~~~r~lsl~~~~~~~~~~-~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i 297 (581)
.+.+++++.+. +......+ ..+ +++|++|.+.++.... .. +..|..+++|++|++++|.++.+|..
T Consensus 19 ~~~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~------~~---~~~~~~l~~L~~L~Ls~N~l~~lp~~- 87 (520)
T 2z7x_B 19 LSQKTTILNIS-QNYISELWTSDILSLSKLRILIISHNRIQY------LD---ISVFKFNQELEYLDLSHNKLVKISCH- 87 (520)
T ss_dssp CCTTCSEEECC-SSCCCCCCHHHHTTCTTCCEEECCSSCCCE------EE---GGGGTTCTTCCEEECCSSCCCEEECC-
T ss_pred ccccccEEECC-CCcccccChhhccccccccEEecCCCccCC------cC---hHHhhcccCCCEEecCCCceeecCcc-
Confidence 44788999998 55444343 444 8899999999887643 32 56788999999999999999888876
Q ss_pred cCcCCCcEEeccCCCCcc--cChhhhcccCCcEEEecCCcccccchhhhcCCCC--cEeecCCccc--CCCCCCccCC--
Q 035853 298 NPLLLLKYLVLNIPSLKH--LPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNEL--RHLNFGSITL--PAHPGKCCSS-- 369 (581)
Q Consensus 298 ~~l~~Lr~L~L~~~~i~~--lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L--~~L~l~~~~~--~~~~p~~i~~-- 369 (581)
.+++|++|++++|.++. +|..++++++|++|++++|.+.. ..+..+++| +.|++++|.+ .+..|..++.
T Consensus 88 -~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~ 164 (520)
T 2z7x_B 88 -PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN 164 (520)
T ss_dssp -CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCC
T ss_pred -ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccc
Confidence 78999999999999884 67889999999999999987755 345667777 8888877776 4444444443
Q ss_pred ------------------------CCCCcEeceec---------------------------------------------
Q 035853 370 ------------------------LENLNFISVLH--------------------------------------------- 380 (581)
Q Consensus 370 ------------------------l~~L~~L~l~~--------------------------------------------- 380 (581)
+++|+.|++.+
T Consensus 165 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~ 244 (520)
T 2z7x_B 165 TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLV 244 (520)
T ss_dssp EEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHH
T ss_pred cceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHh
Confidence 33333333333
Q ss_pred ------------CC--Ccchhhh-----CCCCCCCeEEEeeecccchhchh-hh-------------------------c
Q 035853 381 ------------PS--SCTQDIL-----GRLPSLQTFRVHENLSSYQSMLS-NN-------------------------L 415 (581)
Q Consensus 381 ------------~~--~~~~~~l-----~~l~~L~~L~l~~~~~~~~~~l~-~~-------------------------l 415 (581)
+. +.++..+ +.+++|+.++++++. . .+| .. .
T Consensus 245 ~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~--~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 320 (520)
T 2z7x_B 245 WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV--F--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCP 320 (520)
T ss_dssp HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECC--C--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCC
T ss_pred hhCcccEEEeecccccCccccchhhcccccCceeEeccccccc--e--ecchhhhhcccccCceeEEEcCCCccccccch
Confidence 22 1222222 233333333333221 0 111 00 0
Q ss_pred CCCCCCCEEEeecCCcccCCcccc--cCC-CCCCCCCccEEEEeeccCCC--CCcccccCC-------------------
Q 035853 416 CPLLHLESLKLVDERTIALQPSSI--VLP-EYQFPPRLIELSLSNTELKY--DPMPALEKL------------------- 471 (581)
Q Consensus 416 ~~~~~L~~L~l~~~~~i~L~~l~l--~lp-~~~~l~~L~~L~L~~~~l~~--~~~~~l~~l------------------- 471 (581)
..+++|+.|+++++. + .+| +++.+++|++|++++|.+++ ..+..++.+
T Consensus 321 ~~l~~L~~L~Ls~n~--------l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~ 392 (520)
T 2z7x_B 321 SKISPFLHLDFSNNL--------LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392 (520)
T ss_dssp SSCCCCCEEECCSSC--------CCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGG
T ss_pred hhCCcccEEEeECCc--------cChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccccc
Confidence 345556666665533 3 233 44445555555555544432 222334444
Q ss_pred ------CCCCeEEEecCcccCceeeeCCCCC-CCCcEEEecCCCcccccccCcccccccceEeeccCcCCCCCccc-ccC
Q 035853 472 ------PHLRVLKLKKNSFFGRKLVCSSGGF-PSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEE-LWR 543 (581)
Q Consensus 472 ------~~L~~L~L~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~ 543 (581)
++|++|++++|.+.+..+ ..+ ++|+.|++++| .++.+|..+..+++|+.|++++|. +..+|.. +..
T Consensus 393 ~~~~~l~~L~~L~Ls~N~l~~~~~----~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~ 466 (520)
T 2z7x_B 393 GDCSWTKSLLSLNMSSNILTDTIF----RCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQ-LKSVPDGIFDR 466 (520)
T ss_dssp CSCCCCTTCCEEECCSSCCCGGGG----GSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTT
T ss_pred chhccCccCCEEECcCCCCCcchh----hhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCCc-CCccCHHHhcc
Confidence 455555555444433221 112 67888888887 567888877899999999999996 5678876 889
Q ss_pred CCCccEEEeeCCC
Q 035853 544 IKSLTKLELWWPR 556 (581)
Q Consensus 544 l~~L~~L~l~~c~ 556 (581)
+++|++|++++||
T Consensus 467 l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 467 LTSLQKIWLHTNP 479 (520)
T ss_dssp CTTCCEEECCSSC
T ss_pred CCcccEEECcCCC
Confidence 9999999999887
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-26 Score=233.65 Aligned_cols=278 Identities=17% Similarity=0.196 Sum_probs=235.6
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcc
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNL 323 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L 323 (581)
+++++.|.+.++.... .+.+..+++|++|++++|.++.++. +..+++|++|++++|.++.+| .++++
T Consensus 43 l~~L~~L~l~~~~i~~-----------~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l 109 (347)
T 4fmz_A 43 LESITKLVVAGEKVAS-----------IQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNL 109 (347)
T ss_dssp HTTCSEEECCSSCCCC-----------CTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTC
T ss_pred cccccEEEEeCCcccc-----------chhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCC
Confidence 7899999999987743 2457889999999999999998876 899999999999999999876 69999
Q ss_pred cCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEEEee
Q 035853 324 LSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFRVHE 402 (581)
Q Consensus 324 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~ 402 (581)
++|++|++++|.+..+|. +..+++|++|++++|......+ .+..+++|+.|++.++. ...+. +..+++|+.|++++
T Consensus 110 ~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~ 186 (347)
T 4fmz_A 110 TNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNY 186 (347)
T ss_dssp TTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTT
T ss_pred CcCCEEECcCCcccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccC
Confidence 999999999999999887 8899999999999997665444 58999999999999998 43333 88999999999999
Q ss_pred ecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCCCCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEec
Q 035853 403 NLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKK 481 (581)
Q Consensus 403 ~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~ 481 (581)
|. . ..++. +..+++|+.|+++++. + .++.+..+++|++|++++|.++... .++.+++|++|++++
T Consensus 187 n~--l-~~~~~-~~~l~~L~~L~l~~n~--------l~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~ 252 (347)
T 4fmz_A 187 NQ--I-EDISP-LASLTSLHYFTAYVNQ--------ITDITPVANMTRLNSLKIGNNKITDLS--PLANLSQLTWLEIGT 252 (347)
T ss_dssp SC--C-CCCGG-GGGCTTCCEEECCSSC--------CCCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCS
T ss_pred Cc--c-ccccc-ccCCCccceeecccCC--------CCCCchhhcCCcCCEEEccCCccCCCc--chhcCCCCCEEECCC
Confidence 85 2 33333 7788999999999855 4 3334667899999999999876543 389999999999999
Q ss_pred CcccCceeeeCCCCCCCCcEEEecCCCcccccccCcccccccceEeeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 482 NSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 482 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
|.+.+. ..+..+++|+.|++++| .+..++. +..+++|+.|++++|......|..+..+++|++|++++|+
T Consensus 253 n~l~~~---~~~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 253 NQISDI---NAVKDLTKLKMLNVGSN-QISDISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp SCCCCC---GGGTTCTTCCEEECCSS-CCCCCGG-GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred CccCCC---hhHhcCCCcCEEEccCC-ccCCChh-hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 987653 24678999999999998 5777753 7889999999999998766677789999999999999998
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.6e-27 Score=260.27 Aligned_cols=310 Identities=14% Similarity=0.117 Sum_probs=233.4
Q ss_pred CCCCeeEEEEEecccCCC------------------ccccc----CCcccEEEEecccccccccchhhhhhhHHHhccCC
Q 035853 221 SLEDFKRISVCRTVTNFD------------------SWEHF----DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFK 278 (581)
Q Consensus 221 ~~~~~r~lsl~~~~~~~~------------------~~~~~----~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (581)
...+.+.+.+. ++.... ++..+ +++|+.|.+.++.... .. +..+.+++
T Consensus 446 ~L~~L~~L~Ls-~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~------~i---P~~l~~L~ 515 (876)
T 4ecn_A 446 RLTKLQIIYFA-NSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT------QL---PDFLYDLP 515 (876)
T ss_dssp GCTTCCEEEEE-SCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC------SC---CGGGGGCS
T ss_pred cCCCCCEEECc-CCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCc------cC---hHHHhCCC
Confidence 34567888888 444433 44442 6788888888776432 22 46778888
Q ss_pred ceeEEEecCcc-cc--cCCCcccCcC-------CCcEEeccCCCCcccCh--hhhcccCCcEEEecCCcccccchhhhcC
Q 035853 279 FLRLLDLGTIV-LD--EYPAGINPLL-------LLKYLVLNIPSLKHLPS--SLCNLLSLHTLDMRWSYIHHTPDEIWKM 346 (581)
Q Consensus 279 ~Lr~L~L~~~~-l~--~lp~~i~~l~-------~Lr~L~L~~~~i~~lp~--~i~~L~~L~~L~l~~~~l~~lp~~i~~l 346 (581)
+|++|++++|. ++ .+|..++.+. +|++|++++|.+..+|. .++++++|++|++++|.+..+| .++.+
T Consensus 516 ~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L 594 (876)
T 4ecn_A 516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTN 594 (876)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTT
T ss_pred CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCC
Confidence 88888888887 76 3776666555 88888888888888887 7888888888888888777888 68888
Q ss_pred CCCcEeecCCcccCCCCCCccCCCCC-CcEeceecCC-CcchhhhCCCCC--CCeEEEeeecccchhchh---hhcC--C
Q 035853 347 NELRHLNFGSITLPAHPGKCCSSLEN-LNFISVLHPS-SCTQDILGRLPS--LQTFRVHENLSSYQSMLS---NNLC--P 417 (581)
Q Consensus 347 ~~L~~L~l~~~~~~~~~p~~i~~l~~-L~~L~l~~~~-~~~~~~l~~l~~--L~~L~l~~~~~~~~~~l~---~~l~--~ 417 (581)
++|+.|++++|.+. .+|..+.++++ |+.|++.++. ..++..+..++. |+.|++++|. .....| ..+. .
T Consensus 595 ~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~--l~g~ip~l~~~l~~~~ 671 (876)
T 4ecn_A 595 VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNK--IGSEGRNISCSMDDYK 671 (876)
T ss_dssp SEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSC--TTTTSSSCSSCTTTCC
T ss_pred CcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCc--CCCccccchhhhcccc
Confidence 88888888888887 78878888888 8888888887 666666665544 8888888885 333222 2223 2
Q ss_pred CCCCCEEEeecCCcccCCcccc-cCC-C-CCCCCCccEEEEeeccCCCCCccccc--------CCCCCCeEEEecCcccC
Q 035853 418 LLHLESLKLVDERTIALQPSSI-VLP-E-YQFPPRLIELSLSNTELKYDPMPALE--------KLPHLRVLKLKKNSFFG 486 (581)
Q Consensus 418 ~~~L~~L~l~~~~~i~L~~l~l-~lp-~-~~~l~~L~~L~L~~~~l~~~~~~~l~--------~l~~L~~L~L~~~~~~~ 486 (581)
+.+|+.|+++++. + .+| + +..+++|+.|+|++|.+. ..+..+. ++++|+.|+|++|.+.
T Consensus 672 ~~~L~~L~Ls~N~--------L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~- 741 (876)
T 4ecn_A 672 GINASTVTLSYNE--------IQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT- 741 (876)
T ss_dssp CCCEEEEECCSSC--------CCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-
T ss_pred CCCcCEEEccCCc--------CCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-
Confidence 3478888888765 6 788 4 457899999999999876 3333322 3348999999998887
Q ss_pred ceeeeCCC--CCCCCcEEEecCCCcccccccCcccccccceEeecc------CcCCCCCcccccCCCCccEEEeeCCC
Q 035853 487 RKLVCSSG--GFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINP------CAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 487 ~~~~~~~~--~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~------c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
.++..+. .+++|+.|+|++| .+..+|..+..+++|+.|++++ |.....+|..+.++++|++|++++|.
T Consensus 742 -~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 742 -SLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND 817 (876)
T ss_dssp -CCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred -cchHHhhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC
Confidence 3344454 8999999999998 5667898899999999999977 55567889999999999999999997
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-26 Score=249.28 Aligned_cols=165 Identities=22% Similarity=0.192 Sum_probs=122.4
Q ss_pred CCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCc------c----cCCccc-----c-cC-C--CCCCCCCcc
Q 035853 391 RLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERT------I----ALQPSS-----I-VL-P--EYQFPPRLI 451 (581)
Q Consensus 391 ~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~------i----~L~~l~-----l-~l-p--~~~~l~~L~ 451 (581)
.+++|+.|+++++.-......+..+..+++|+.|+++++.- + .|+.+. + .. | .+..+++|+
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 424 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCC
T ss_pred cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCC
Confidence 34555555555553111111255666777888888877431 1 222222 3 22 3 578899999
Q ss_pred EEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCccccc-ccCcccccccceEeecc
Q 035853 452 ELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEW-TMENDAMPKLESLIINP 530 (581)
Q Consensus 452 ~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~ 530 (581)
+|++++|.+....+..++.+++|++|++++|.+.+..++..+..+++|+.|++++|. +..+ |..+..+++|+.|++++
T Consensus 425 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~ 503 (570)
T 2z63_A 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMAS 503 (570)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred EEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCC
Confidence 999999988777788899999999999999988765667778999999999999985 5555 77889999999999999
Q ss_pred CcCCCCCcccccCCCCccEEEeeCCC
Q 035853 531 CAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 531 c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
|......|..+.++++|++|++++||
T Consensus 504 n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 504 NQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcCCCCCHHHhhcccCCcEEEecCCc
Confidence 97555455678999999999999865
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-26 Score=249.90 Aligned_cols=286 Identities=20% Similarity=0.209 Sum_probs=217.1
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCC-CcccCcCCCcEEeccCCCCcccCh-hhh
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYP-AGINPLLLLKYLVLNIPSLKHLPS-SLC 321 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~-~i~ 321 (581)
.++++.+.+.++.... .+ ...+..+++|++|++++|.++.++ ..++.+++|++|+|++|.+..+|+ .++
T Consensus 50 l~~l~~l~l~~~~l~~------lp---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 120 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRK------LP---AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 120 (597)
T ss_dssp GCCCSEEEESSCEESE------EC---THHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCceEEEeeCCCCCC------cC---HHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHc
Confidence 6788888887776643 33 566788888888888888888554 478888888888888888886664 468
Q ss_pred cccCCcEEEecCCcccccchhh-hcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEE
Q 035853 322 NLLSLHTLDMRWSYIHHTPDEI-WKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFR 399 (581)
Q Consensus 322 ~L~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~ 399 (581)
++++|++|++++|.+..+|..+ +.+++|++|++++|.+.+..|..++.+++|++|+++++. ... .++.+++|+.|+
T Consensus 121 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~l~~L~~L~ 198 (597)
T 3oja_B 121 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHAN 198 (597)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC--CGGGCTTCSEEE
T ss_pred CCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc--Chhhhhhhhhhh
Confidence 8888888888888888888764 788888888888888877667778888888888888877 332 244566677776
Q ss_pred Eeeeccc----------------chhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCCCCCCCCCccEEEEeeccCCC
Q 035853 400 VHENLSS----------------YQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLPEYQFPPRLIELSLSNTELKY 462 (581)
Q Consensus 400 l~~~~~~----------------~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp~~~~l~~L~~L~L~~~~l~~ 462 (581)
++++.-. ....++..+ .++|+.|+++++. + ..+++..+++|+.|+|++|.+.+
T Consensus 199 l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~--------l~~~~~l~~l~~L~~L~Ls~N~l~~ 268 (597)
T 3oja_B 199 VSYNLLSTLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNN--------LTDTAWLLNYPGLVEVDLSYNELEK 268 (597)
T ss_dssp CCSSCCSEEECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSC--------CCCCGGGGGCTTCSEEECCSSCCCE
T ss_pred cccCccccccCCchhheeeccCCccccccccc--CCCCCEEECCCCC--------CCCChhhccCCCCCEEECCCCccCC
Confidence 6665300 011111111 1345555555433 4 33377889999999999999888
Q ss_pred CCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccCcccccccceEeeccCcCCCCCccccc
Q 035853 463 DPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEELW 542 (581)
Q Consensus 463 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~ 542 (581)
..+..++.+++|+.|+|++|.+.+ ++.....+|+|+.|++++| .+..+|..+..+++|+.|++++|. +..+| +.
T Consensus 269 ~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~-l~~~~--~~ 342 (597)
T 3oja_B 269 IMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLK--LS 342 (597)
T ss_dssp EESGGGTTCSSCCEEECTTSCCCE--EECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCC--CC
T ss_pred CCHHHhcCccCCCEEECCCCCCCC--CCcccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCCC-CCCcC--hh
Confidence 778889999999999999988765 3555677999999999998 577888888999999999999997 45555 67
Q ss_pred CCCCccEEEeeCCC
Q 035853 543 RIKSLTKLELWWPR 556 (581)
Q Consensus 543 ~l~~L~~L~l~~c~ 556 (581)
.+++|+.|++++||
T Consensus 343 ~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 343 THHTLKNLTLSHND 356 (597)
T ss_dssp TTCCCSEEECCSSC
T ss_pred hcCCCCEEEeeCCC
Confidence 88999999999998
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=246.25 Aligned_cols=274 Identities=18% Similarity=0.139 Sum_probs=181.5
Q ss_pred ceeEEEecCcccccCCC-cccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCccccc-chhhhcCCCCcEeecCC
Q 035853 279 FLRLLDLGTIVLDEYPA-GINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHT-PDEIWKMNELRHLNFGS 356 (581)
Q Consensus 279 ~Lr~L~L~~~~l~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~ 356 (581)
.|+.|+++++.++.++. .++.+++|++|++++|.++.+|..++++++|++|++++|.+..+ |..+..+++|++|++++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence 56777777777775543 47888899999999999989998888999999999999987766 45678899999999999
Q ss_pred cccCCCCCCc-cCCCCCCcEeceecCC-Ccc---hhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCc
Q 035853 357 ITLPAHPGKC-CSSLENLNFISVLHPS-SCT---QDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERT 431 (581)
Q Consensus 357 ~~~~~~~p~~-i~~l~~L~~L~l~~~~-~~~---~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~ 431 (581)
|.+.+.+|.. ++.+++|++|++.++. ... +..++.+++|+.|+++++. .....+..+..+++|+.|+++++.-
T Consensus 335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l 412 (606)
T 3t6q_A 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE--PLSLKTEAFKECPQLELLDLAFTRL 412 (606)
T ss_dssp CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS--CEEECTTTTTTCTTCSEEECTTCCE
T ss_pred CCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc--CCcCCHHHhcCCccCCeEECCCCcC
Confidence 8887666654 8888999999988887 322 5678888999999998886 5556677788888888888887430
Q ss_pred --------c----cCCccc-----c--cCC-CCCCCCCccEEEEeeccCCCC---CcccccCCCCCCeEEEecCcccCce
Q 035853 432 --------I----ALQPSS-----I--VLP-EYQFPPRLIELSLSNTELKYD---PMPALEKLPHLRVLKLKKNSFFGRK 488 (581)
Q Consensus 432 --------i----~L~~l~-----l--~lp-~~~~l~~L~~L~L~~~~l~~~---~~~~l~~l~~L~~L~L~~~~~~~~~ 488 (581)
+ .|+.+. + ..| ++..+++|++|++++|.+.+. .+..++.+++|++|++++|.+.+..
T Consensus 413 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 492 (606)
T 3t6q_A 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492 (606)
T ss_dssp ECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC
T ss_pred CCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC
Confidence 0 111111 2 122 344455555555555544331 1123445555555555554443222
Q ss_pred eeeCCCCCCCCcEEEecCCCcccccccCcccccccceEeeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 489 LVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 489 ~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
+..+..+++|+.|++++|......|..+..+++| .|++++|......|..+..+++|+.|++++||
T Consensus 493 -~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 493 -QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp -TTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred -hhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCC
Confidence 3334555666666666654333344455566666 66666665444445556666777777777765
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.4e-26 Score=243.88 Aligned_cols=313 Identities=13% Similarity=0.097 Sum_probs=219.2
Q ss_pred eEEEEEecccCCCcccccCCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccC-CCcccCcCCCc
Q 035853 226 KRISVCRTVTNFDSWEHFDTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEY-PAGINPLLLLK 304 (581)
Q Consensus 226 r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr 304 (581)
+++.+. +.....++..+.++++.|.+.++.... .. +..|.++++|++|++++|.++.+ |..++++++|+
T Consensus 3 ~~l~ls-~n~l~~ip~~~~~~L~~L~Ls~n~i~~------~~---~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 72 (520)
T 2z7x_B 3 FLVDRS-KNGLIHVPKDLSQKTTILNISQNYISE------LW---TSDILSLSKLRILIISHNRIQYLDISVFKFNQELE 72 (520)
T ss_dssp CEEECT-TSCCSSCCCSCCTTCSEEECCSSCCCC------CC---HHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCC
T ss_pred ceEecC-CCCcccccccccccccEEECCCCcccc------cC---hhhccccccccEEecCCCccCCcChHHhhcccCCC
Confidence 345555 444444665557899999999998754 33 57899999999999999999955 77899999999
Q ss_pred EEeccCCCCcccChhhhcccCCcEEEecCCcccc--cchhhhcCCCCcEeecCCcccCCCCCCccCCCCCC--cEeceec
Q 035853 305 YLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHH--TPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENL--NFISVLH 380 (581)
Q Consensus 305 ~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L--~~L~l~~ 380 (581)
+|++++|.++.+|.. .+++|++|++++|.+.. +|..++++++|++|++++|.+.+ ..++.+++| +.|++.+
T Consensus 73 ~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~ 147 (520)
T 2z7x_B 73 YLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVL 147 (520)
T ss_dssp EEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEE
T ss_pred EEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeec
Confidence 999999999999977 89999999999998875 67899999999999999998864 356677777 9999888
Q ss_pred CC----CcchhhhCC--------------------------CC-------------------------------------
Q 035853 381 PS----SCTQDILGR--------------------------LP------------------------------------- 393 (581)
Q Consensus 381 ~~----~~~~~~l~~--------------------------l~------------------------------------- 393 (581)
+. ...+..+.. ++
T Consensus 148 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l 227 (520)
T 2z7x_B 148 GETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTL 227 (520)
T ss_dssp CTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEE
T ss_pred ccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccc
Confidence 64 122222222 22
Q ss_pred --------------------CCCeEEEeeecccchhchhhhc-----CCCCCCCEEEeecCCc-c------------cCC
Q 035853 394 --------------------SLQTFRVHENLSSYQSMLSNNL-----CPLLHLESLKLVDERT-I------------ALQ 435 (581)
Q Consensus 394 --------------------~L~~L~l~~~~~~~~~~l~~~l-----~~~~~L~~L~l~~~~~-i------------~L~ 435 (581)
+|+.|+++++. ..+.+|..+ ..+++|+.++++++.- + .++
T Consensus 228 ~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~--l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~ 305 (520)
T 2z7x_B 228 NNIETTWNSFIRILQLVWHTTVWYFSISNVK--LQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIK 305 (520)
T ss_dssp EEEEEEHHHHHHHHHHHHTSSCSEEEEEEEE--EESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCS
T ss_pred cccccCHHHHHHHHHHhhhCcccEEEeeccc--ccCccccchhhcccccCceeEeccccccceecchhhhhcccccCcee
Confidence 33444444442 233455555 5555555555554220 0 122
Q ss_pred cccc---cCC---CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCc-eeeeCCCCCCCCcEEEecCCC
Q 035853 436 PSSI---VLP---EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGR-KLVCSSGGFPSLKVMHLKSMF 508 (581)
Q Consensus 436 ~l~l---~lp---~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~ 508 (581)
.+.+ .+. ....+++|++|++++|.+++..+..++.+++|++|++++|.+.+. .++..+..+++|+.|++++|.
T Consensus 306 ~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~ 385 (520)
T 2z7x_B 306 NFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385 (520)
T ss_dssp EEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC
T ss_pred EEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc
Confidence 2222 122 227899999999999999887888999999999999999988752 223446678888888888874
Q ss_pred cccccccC-ccccc----------------------ccceEeeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 509 WLEEWTME-NDAMP----------------------KLESLIINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 509 ~l~~l~~~-~~~l~----------------------~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
....+|.. +..++ +|+.|++++|. +..+|..+..+++|++|++++|.
T Consensus 386 l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 386 VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQ 455 (520)
T ss_dssp CBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSC
T ss_pred CCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCc-ccccchhhhcCCCCCEEECCCCc
Confidence 33326543 33444 55555555553 33566666677777777777765
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=243.50 Aligned_cols=108 Identities=20% Similarity=0.190 Sum_probs=79.7
Q ss_pred CCCCCCCccEEEEeeccCCCCCc-ccccCCCCCCeEEEecCcccCceeeeCCCCC-CCCcEEEecCCCcccccccCcccc
Q 035853 443 EYQFPPRLIELSLSNTELKYDPM-PALEKLPHLRVLKLKKNSFFGRKLVCSSGGF-PSLKVMHLKSMFWLEEWTMENDAM 520 (581)
Q Consensus 443 ~~~~l~~L~~L~L~~~~l~~~~~-~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~l 520 (581)
.+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+.. ...+ ++|+.|++++| .++.+|..+..+
T Consensus 398 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~l~~~L~~L~L~~N-~l~~ip~~~~~l 472 (562)
T 3a79_B 398 MTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV----FRCLPPKVKVLDLHNN-RIMSIPKDVTHL 472 (562)
T ss_dssp TTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGG----GSSCCTTCSEEECCSS-CCCCCCTTTTSS
T ss_pred hhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcch----hhhhcCcCCEEECCCC-cCcccChhhcCC
Confidence 45566666666666666554222 33556666777777666655433 1233 68999999998 678898888899
Q ss_pred cccceEeeccCcCCCCCccc-ccCCCCccEEEeeCCC
Q 035853 521 PKLESLIINPCAYLKILPEE-LWRIKSLTKLELWWPR 556 (581)
Q Consensus 521 ~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~c~ 556 (581)
++|+.|++++|. +..+|.. +..+++|+.|++++||
T Consensus 473 ~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 473 QALQELNVASNQ-LKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CCCSEEECCSSC-CCCCCTTSTTTCTTCCCEECCSCC
T ss_pred CCCCEEECCCCC-CCCCCHHHHhcCCCCCEEEecCCC
Confidence 999999999987 5588887 8899999999999987
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.8e-26 Score=227.73 Aligned_cols=234 Identities=21% Similarity=0.211 Sum_probs=193.2
Q ss_pred cCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecC
Q 035853 276 WFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFG 355 (581)
Q Consensus 276 ~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 355 (581)
...+++.|+++++.++.+|..++++++|++|++++|.+..+|..++++++|++|++++|.+..+|..++++++|++|+++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCCccCCCCCCcEeceecCCCcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCC
Q 035853 356 SITLPAHPGKCCSSLENLNFISVLHPSSCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQ 435 (581)
Q Consensus 356 ~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~ 435 (581)
+|...+.+|..++.. . ....++.+++|+.|++++|. . ..+|.
T Consensus 159 ~n~~~~~~p~~~~~~------~-------~~~~~~~l~~L~~L~L~~n~--l-~~lp~---------------------- 200 (328)
T 4fcg_A 159 ACPELTELPEPLAST------D-------ASGEHQGLVNLQSLRLEWTG--I-RSLPA---------------------- 200 (328)
T ss_dssp EETTCCCCCSCSEEE------C--------CCCEEESTTCCEEEEEEEC--C-CCCCG----------------------
T ss_pred CCCCccccChhHhhc------c-------chhhhccCCCCCEEECcCCC--c-CcchH----------------------
Confidence 998888888655431 1 11224456777777777774 1 13333
Q ss_pred cccccCCCCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCccccccc
Q 035853 436 PSSIVLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTM 515 (581)
Q Consensus 436 ~l~l~lp~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~ 515 (581)
+++.+++|++|++++|.+.+ .++.++.+++|++|++++|.+.+.. +..++.+++|+.|++++|.....+|.
T Consensus 201 -------~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~-p~~~~~l~~L~~L~L~~n~~~~~~p~ 271 (328)
T 4fcg_A 201 -------SIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNY-PPIFGGRAPLKRLILKDCSNLLTLPL 271 (328)
T ss_dssp -------GGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBC-CCCTTCCCCCCEEECTTCTTCCBCCT
T ss_pred -------hhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhh-HHHhcCCCCCCEEECCCCCchhhcch
Confidence 45556677777777777653 5557888999999999988876654 56678899999999999988889998
Q ss_pred CcccccccceEeeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 516 ENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 516 ~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
.++.+++|+.|++++|+.++.+|..+.++++|+.+.+..+.
T Consensus 272 ~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 272 DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred hhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 89999999999999999999999999999999999887543
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.4e-26 Score=249.31 Aligned_cols=138 Identities=17% Similarity=0.087 Sum_probs=120.5
Q ss_pred CCCcccccCCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccC-CCcccCcCCCcEEeccCCCCc
Q 035853 236 NFDSWEHFDTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEY-PAGINPLLLLKYLVLNIPSLK 314 (581)
Q Consensus 236 ~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr~L~L~~~~i~ 314 (581)
...++..+.+++++|.+.++.... .. ...|.++++|++|++++|.++.+ |..++++++|++|++++|.++
T Consensus 23 l~~ip~~~~~~l~~L~Ls~n~l~~------~~---~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~ 93 (606)
T 3vq2_A 23 LSKVPDDIPSSTKNIDLSFNPLKI------LK---SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93 (606)
T ss_dssp CSSCCTTSCTTCCEEECTTSCCCE------EC---TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred cccCCCCCCCCcCEEECCCCCcCE------eC---hhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccc
Confidence 344665557899999999988753 33 46899999999999999999955 667999999999999999999
Q ss_pred cc-ChhhhcccCCcEEEecCCcccccc-hhhhcCCCCcEeecCCcccCC-CCCCccCCCCCCcEeceecCC
Q 035853 315 HL-PSSLCNLLSLHTLDMRWSYIHHTP-DEIWKMNELRHLNFGSITLPA-HPGKCCSSLENLNFISVLHPS 382 (581)
Q Consensus 315 ~l-p~~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~l~~~~ 382 (581)
.+ |..++++++|++|++++|.+..+| ..++++++|++|++++|.+.+ .+|..++++++|++|++.++.
T Consensus 94 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 94 SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred ccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence 76 788999999999999999998887 668999999999999999875 679999999999999998876
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-25 Score=241.24 Aligned_cols=113 Identities=18% Similarity=0.133 Sum_probs=76.5
Q ss_pred CC-CCCCCCCccEEEEeeccCCCCC--cccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccCc
Q 035853 441 LP-EYQFPPRLIELSLSNTELKYDP--MPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMEN 517 (581)
Q Consensus 441 lp-~~~~l~~L~~L~L~~~~l~~~~--~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~ 517 (581)
+| +++.+++|++|++++|.+++.. +..++.+++|++|++++|.+.+......+..+++|+.|++++|......|..+
T Consensus 369 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 448 (562)
T 3a79_B 369 VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL 448 (562)
T ss_dssp TTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSC
T ss_pred hhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhh
Confidence 45 6666777777777777665421 23466677777777777666553333345666777777777764333333322
Q ss_pred ccccccceEeeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 518 DAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 518 ~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
. ++|+.|++++|. +..+|..+..+++|++|++++|.
T Consensus 449 ~--~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~~N~ 484 (562)
T 3a79_B 449 P--PKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQ 484 (562)
T ss_dssp C--TTCSEEECCSSC-CCCCCTTTTSSCCCSEEECCSSC
T ss_pred c--CcCCEEECCCCc-CcccChhhcCCCCCCEEECCCCC
Confidence 2 689999999885 66888888899999999999986
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.6e-25 Score=233.88 Aligned_cols=303 Identities=16% Similarity=0.156 Sum_probs=197.3
Q ss_pred CCeeEEEEEecccCCCccccc-CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccCcC
Q 035853 223 EDFKRISVCRTVTNFDSWEHF-DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPLL 301 (581)
Q Consensus 223 ~~~r~lsl~~~~~~~~~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~ 301 (581)
..++.+.+. +.....++.-. +++|+.|.+.++.... . .+ +..+++|++|++++|.+..++. +++++
T Consensus 46 ~~l~~L~l~-~~~i~~l~~~~~l~~L~~L~Ls~n~l~~------~----~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~ 112 (466)
T 1o6v_A 46 DQVTTLQAD-RLGIKSIDGVEYLNNLTQINFSNNQLTD------I----TP-LKNLTKLVDILMNNNQIADITP-LANLT 112 (466)
T ss_dssp HTCCEEECC-SSCCCCCTTGGGCTTCCEEECCSSCCCC------C----GG-GTTCTTCCEEECCSSCCCCCGG-GTTCT
T ss_pred ccccEEecC-CCCCccCcchhhhcCCCEEECCCCccCC------c----hh-hhccccCCEEECCCCccccChh-hcCCC
Confidence 457777777 54444344322 8888888888876643 1 23 7888888888888888886665 88888
Q ss_pred CCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecC
Q 035853 302 LLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHP 381 (581)
Q Consensus 302 ~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~ 381 (581)
+|++|++++|.++.+|. ++++++|++|++++|.+..+|. ++.+++|++|++++ .+. ..+ .++++++|+.|++.++
T Consensus 113 ~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~-~~~-~~~-~~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 113 NLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGN-QVT-DLK-PLANLTTLERLDISSN 187 (466)
T ss_dssp TCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEE-SCC-CCG-GGTTCTTCCEEECCSS
T ss_pred CCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCChh-hccCCcccEeecCC-ccc-Cch-hhccCCCCCEEECcCC
Confidence 88888888888887765 7888888888888887777664 66666666666642 222 122 2566666666666666
Q ss_pred CCcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCC--c---c----cCCccc-----c-cCCCCCC
Q 035853 382 SSCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDER--T---I----ALQPSS-----I-VLPEYQF 446 (581)
Q Consensus 382 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~--~---i----~L~~l~-----l-~lp~~~~ 446 (581)
.-.....+..+++|+.|+++++. .....+ +..+++|+.|+++++. . + .|+.+. + .++.+..
T Consensus 188 ~l~~~~~l~~l~~L~~L~l~~n~--l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 263 (466)
T 1o6v_A 188 KVSDISVLAKLTNLESLIATNNQ--ISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSG 263 (466)
T ss_dssp CCCCCGGGGGCTTCSEEECCSSC--CCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTT
T ss_pred cCCCChhhccCCCCCEEEecCCc--cccccc--ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhc
Confidence 51112335556666666666654 222212 3445555555555532 0 0 111111 2 2223556
Q ss_pred CCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccCcccccccceE
Q 035853 447 PPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESL 526 (581)
Q Consensus 447 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L 526 (581)
+++|++|++++|.+.+.. .++.+++|+.|++++|.+.+... +..+++|+.|++++| .+..++. +..+++|+.|
T Consensus 264 l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L 336 (466)
T 1o6v_A 264 LTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDISP---ISNLKNLTYLTLYFN-NISDISP-VSSLTKLQRL 336 (466)
T ss_dssp CTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCCGG---GGGCTTCSEEECCSS-CCSCCGG-GGGCTTCCEE
T ss_pred CCCCCEEECCCCccCccc--cccCCCccCeEEcCCCcccCchh---hcCCCCCCEEECcCC-cCCCchh-hccCccCCEe
Confidence 777888888777765432 27778888888888777655331 567788888888887 4555544 6788888888
Q ss_pred eeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 527 IINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 527 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
++++|. +..++ .+..+++|+.|++++|+
T Consensus 337 ~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 337 FFYNNK-VSDVS-SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp ECCSSC-CCCCG-GGTTCTTCCEEECCSSC
T ss_pred ECCCCc-cCCch-hhccCCCCCEEeCCCCc
Confidence 888885 45554 67888999999998887
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.3e-25 Score=233.47 Aligned_cols=267 Identities=18% Similarity=0.157 Sum_probs=229.4
Q ss_pred CceeEEEecCcccccC-CCcccCcCCCcEEeccCCCCccc-ChhhhcccCCcEEEecCCcccccchh-hhcCCCCcEeec
Q 035853 278 KFLRLLDLGTIVLDEY-PAGINPLLLLKYLVLNIPSLKHL-PSSLCNLLSLHTLDMRWSYIHHTPDE-IWKMNELRHLNF 354 (581)
Q Consensus 278 ~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l 354 (581)
+++++|+|++|.++.+ |..+.++++|++|+|++|.+..+ |..++++++|++|++++|.+..+|.. +..+++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 5899999999999965 56899999999999999999966 77899999999999999999999875 588999999999
Q ss_pred CCcccCCCCCCccCCCCCCcEeceecCC--CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcc
Q 035853 355 GSITLPAHPGKCCSSLENLNFISVLHPS--SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTI 432 (581)
Q Consensus 355 ~~~~~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i 432 (581)
++|.+....|..+..+++|+.|++.++. ...+..+..+++|+.|+++++. .....+..+..+++|+.|+++++.
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~l~~l~~L~~L~l~~n~-- 187 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN--LTSIPTEALSHLHGLIVLRLRHLN-- 187 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC--CSSCCHHHHTTCTTCCEEEEESCC--
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc--CcccChhHhcccCCCcEEeCCCCc--
Confidence 9999987778889999999999999988 3445678899999999999996 555555678899999999999866
Q ss_pred cCCcccc-cCC--CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCc
Q 035853 433 ALQPSSI-VLP--EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFW 509 (581)
Q Consensus 433 ~L~~l~l-~lp--~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 509 (581)
+ .++ .+..+++|++|++++|...+..++......+|+.|++++|.+.... ...+..+++|+.|++++|.
T Consensus 188 ------i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~- 259 (477)
T 2id5_A 188 ------INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP-YLAVRHLVYLRFLNLSYNP- 259 (477)
T ss_dssp ------CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCC-HHHHTTCTTCCEEECCSSC-
T ss_pred ------CcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccC-HHHhcCccccCeeECCCCc-
Confidence 6 555 6889999999999999877766666667779999999999876432 3346789999999999985
Q ss_pred ccccc-cCcccccccceEeeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 510 LEEWT-MENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 510 l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
+..++ ..+..+++|+.|++++|......|..+..+++|++|++++|.
T Consensus 260 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 260 ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp CCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred CCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence 56554 457899999999999998666667889999999999999986
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5e-25 Score=232.80 Aligned_cols=299 Identities=18% Similarity=0.150 Sum_probs=211.0
Q ss_pred CCCCeeEEEEEecccCCCccccc-CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccC
Q 035853 221 SLEDFKRISVCRTVTNFDSWEHF-DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINP 299 (581)
Q Consensus 221 ~~~~~r~lsl~~~~~~~~~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~ 299 (581)
.....+++.+. +......+.-. +++|+.|.+.++.... . .+ +.++++|++|++++|.++.++. +.+
T Consensus 66 ~l~~L~~L~Ls-~n~l~~~~~~~~l~~L~~L~l~~n~l~~------~----~~-~~~l~~L~~L~L~~n~l~~~~~-~~~ 132 (466)
T 1o6v_A 66 YLNNLTQINFS-NNQLTDITPLKNLTKLVDILMNNNQIAD------I----TP-LANLTNLTGLTLFNNQITDIDP-LKN 132 (466)
T ss_dssp GCTTCCEEECC-SSCCCCCGGGTTCTTCCEEECCSSCCCC------C----GG-GTTCTTCCEEECCSSCCCCCGG-GTT
T ss_pred hhcCCCEEECC-CCccCCchhhhccccCCEEECCCCcccc------C----hh-hcCCCCCCEEECCCCCCCCChH-HcC
Confidence 44567777777 44443344322 7788888887776533 1 22 7777888888888877776654 777
Q ss_pred cCCCcEEeccCCCCcccCh--------------------hhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCccc
Q 035853 300 LLLLKYLVLNIPSLKHLPS--------------------SLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITL 359 (581)
Q Consensus 300 l~~Lr~L~L~~~~i~~lp~--------------------~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~ 359 (581)
+++|++|++++|.+..+|. .++++++|++|++++|.+..++. +..+++|++|++++|.+
T Consensus 133 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l 211 (466)
T 1o6v_A 133 LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQI 211 (466)
T ss_dssp CTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCC
T ss_pred CCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCcc
Confidence 7778888777777665542 24556666666666666665543 66677777777777766
Q ss_pred CCCCCCccCCCCCCcEeceecCCCcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc
Q 035853 360 PAHPGKCCSSLENLNFISVLHPSSCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI 439 (581)
Q Consensus 360 ~~~~p~~i~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l 439 (581)
.+..| ++.+++|++|++.++.-.....+..+++|+.|++++|. ... .+. +..+++|+.|+++++. +
T Consensus 212 ~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~--l~~-~~~-~~~l~~L~~L~l~~n~--------l 277 (466)
T 1o6v_A 212 SDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ--ISN-LAP-LSGLTKLTELKLGANQ--------I 277 (466)
T ss_dssp CCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC--CCC-CGG-GTTCTTCSEEECCSSC--------C
T ss_pred ccccc--ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCc--ccc-chh-hhcCCCCCEEECCCCc--------c
Confidence 54333 55677777777777662122456667777777777774 222 222 6677778888877754 5
Q ss_pred -cCCCCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccCcc
Q 035853 440 -VLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMEND 518 (581)
Q Consensus 440 -~lp~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~ 518 (581)
.+|.+..+++|++|++++|.+.+. +.++.+++|+.|++++|.+.+... ...+++|+.|++++| .+..++ .+.
T Consensus 278 ~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~-~l~ 350 (466)
T 1o6v_A 278 SNISPLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNN-KVSDVS-SLA 350 (466)
T ss_dssp CCCGGGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSS-CCCCCG-GGT
T ss_pred CccccccCCCccCeEEcCCCcccCc--hhhcCCCCCCEEECcCCcCCCchh---hccCccCCEeECCCC-ccCCch-hhc
Confidence 444467889999999999987653 348899999999999998876542 568999999999998 566664 578
Q ss_pred cccccceEeeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 519 AMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 519 ~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
.+++|+.|++++|+.....| +..+++|++|++++|+
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 351 NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 386 (466)
T ss_dssp TCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEE
T ss_pred cCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCc
Confidence 89999999999998554444 8899999999999986
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6e-26 Score=239.26 Aligned_cols=304 Identities=13% Similarity=0.091 Sum_probs=237.9
Q ss_pred cccccCCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccc-cC-CCcccCcCCCcEEeccCCCCccc
Q 035853 239 SWEHFDTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLD-EY-PAGINPLLLLKYLVLNIPSLKHL 316 (581)
Q Consensus 239 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~-~l-p~~i~~l~~Lr~L~L~~~~i~~l 316 (581)
++. ..+++++|.+.++.... .. +..|.++++|++|++++|.+. .+ |..+..+++|++|++++|.+..+
T Consensus 25 lp~-l~~~l~~L~Ls~n~i~~------~~---~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ 94 (455)
T 3v47_A 25 VPE-LPAHVNYVDLSLNSIAE------LN---ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL 94 (455)
T ss_dssp CCC-CCTTCCEEECCSSCCCE------EC---TTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEE
T ss_pred CCC-CCCccCEEEecCCccCc------CC---hhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCcc
Confidence 444 46899999999987753 33 577899999999999999986 44 56799999999999999999855
Q ss_pred -ChhhhcccCCcEEEecCCcccc-cchh--hhcCCCCcEeecCCcccCCCCCCc-cCCCCCCcEeceecCC--Ccchhhh
Q 035853 317 -PSSLCNLLSLHTLDMRWSYIHH-TPDE--IWKMNELRHLNFGSITLPAHPGKC-CSSLENLNFISVLHPS--SCTQDIL 389 (581)
Q Consensus 317 -p~~i~~L~~L~~L~l~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~--~~~~~~l 389 (581)
|..++++++|++|++++|.+.. +|.. +..+++|++|++++|.+.+..|.. ++++++|++|++.++. ...+..+
T Consensus 95 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 174 (455)
T 3v47_A 95 ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL 174 (455)
T ss_dssp CTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTS
T ss_pred ChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhh
Confidence 7889999999999999998865 4544 889999999999999998776765 8899999999999988 4444555
Q ss_pred CCC--CCCCeEEEeeecccchhch--------hhhcCCCCCCCEEEeecCCc---c-----------cCCcccc------
Q 035853 390 GRL--PSLQTFRVHENLSSYQSML--------SNNLCPLLHLESLKLVDERT---I-----------ALQPSSI------ 439 (581)
Q Consensus 390 ~~l--~~L~~L~l~~~~~~~~~~l--------~~~l~~~~~L~~L~l~~~~~---i-----------~L~~l~l------ 439 (581)
..+ .+|+.|+++++. ..... ...+..+++|+.|+++++.- + .++.+.+
T Consensus 175 ~~l~~~~L~~L~l~~n~--l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 252 (455)
T 3v47_A 175 LNFQGKHFTLLRLSSIT--LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNM 252 (455)
T ss_dssp GGGTTCEEEEEECTTCB--CTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTT
T ss_pred hccccccccccccccCc--ccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccc
Confidence 544 678899998885 22211 12344668899999998531 0 1111110
Q ss_pred -------cCC-----CCC--CCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEec
Q 035853 440 -------VLP-----EYQ--FPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLK 505 (581)
Q Consensus 440 -------~lp-----~~~--~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~ 505 (581)
.++ .+. ..++|++|++++|.+.+..+..++.+++|++|++++|.+.+.. +..+..+++|++|+++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls 331 (455)
T 3v47_A 253 GSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID-DNAFWGLTHLLKLNLS 331 (455)
T ss_dssp SCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECC
T ss_pred ccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC-hhHhcCcccCCEEECC
Confidence 011 111 2368999999999988777888999999999999988876543 5567889999999999
Q ss_pred CCCccccc-ccCcccccccceEeeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 506 SMFWLEEW-TMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 506 ~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
+|. +..+ +..++.+++|+.|++++|......|..+..+++|++|++++|.
T Consensus 332 ~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 332 QNF-LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp SSC-CCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCc-cCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence 984 5555 6678899999999999998655568889999999999999986
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-24 Score=245.97 Aligned_cols=310 Identities=20% Similarity=0.152 Sum_probs=212.2
Q ss_pred CCCCeeEEEEEecccCC-Cccccc--CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCccccc-CCCc
Q 035853 221 SLEDFKRISVCRTVTNF-DSWEHF--DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDE-YPAG 296 (581)
Q Consensus 221 ~~~~~r~lsl~~~~~~~-~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~-lp~~ 296 (581)
.+..++++.+. .+... ..+..+ +++|++|.+.++.... ... +..|.++++|++|+|++|.+.. .|..
T Consensus 22 lp~~l~~LdLs-~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~-----~i~---~~~f~~L~~L~~L~Ls~N~l~~~~p~~ 92 (844)
T 3j0a_A 22 VLNTTERLLLS-FNYIRTVTASSFPFLEQLQLLELGSQYTPL-----TID---KEAFRNLPNLRILDLGSSKIYFLHPDA 92 (844)
T ss_dssp SCTTCCEEEEE-SCCCCEECSSSCSSCCSCSEEEECTTCCCC-----EEC---TTTTSSCTTCCEEECTTCCCCEECTTS
T ss_pred CCCCcCEEECC-CCcCCccChhHCcccccCeEEeCCCCCCcc-----ccC---HHHhcCCCCCCEEECCCCcCcccCHhH
Confidence 66788999998 54443 334455 8899999998884422 232 4678899999999999999884 4788
Q ss_pred ccCcCCCcEEeccCCCCcc-cChh--hhcccCCcEEEecCCcccccc--hhhhcCCCCcEeecCCcccCCCCCCccCCC-
Q 035853 297 INPLLLLKYLVLNIPSLKH-LPSS--LCNLLSLHTLDMRWSYIHHTP--DEIWKMNELRHLNFGSITLPAHPGKCCSSL- 370 (581)
Q Consensus 297 i~~l~~Lr~L~L~~~~i~~-lp~~--i~~L~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l- 370 (581)
++++++|++|++++|.+.. +|.. ++++++|++|++++|.+..++ ..++++++|++|++++|.+.+..+..++.+
T Consensus 93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~ 172 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ 172 (844)
T ss_dssp SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHH
T ss_pred ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccccc
Confidence 9999999999999998874 5655 889999999999999776653 568899999999999998877777777666
Q ss_pred -CCCcEeceecCC--CcchhhhCCCCC------CCeEEEeeecccchhchhhh---------------------------
Q 035853 371 -ENLNFISVLHPS--SCTQDILGRLPS------LQTFRVHENLSSYQSMLSNN--------------------------- 414 (581)
Q Consensus 371 -~~L~~L~l~~~~--~~~~~~l~~l~~------L~~L~l~~~~~~~~~~l~~~--------------------------- 414 (581)
++|+.|++..+. ...+..++.+.+ |+.|+++++. .....+..
T Consensus 173 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~ 250 (844)
T 3j0a_A 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG--WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250 (844)
T ss_dssp HCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCC--SSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCS
T ss_pred CCccceEECCCCccccccccchhhcCCccccCceeEEecCCCc--CchhHHHHHHhhcCcccccceeccccccccccccc
Confidence 778888877776 334444444444 7788887774 11111111
Q ss_pred ---------cCC--CCCCCEEEeecCCcccCCcccc-cC-C-CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEe
Q 035853 415 ---------LCP--LLHLESLKLVDERTIALQPSSI-VL-P-EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLK 480 (581)
Q Consensus 415 ---------l~~--~~~L~~L~l~~~~~i~L~~l~l-~l-p-~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~ 480 (581)
+.. .++|+.|+++++. + .+ | .+..+++|+.|++++|.+.+..+..++.+++|++|+++
T Consensus 251 ~l~~~~~~~f~~l~~~~L~~L~Ls~n~--------l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls 322 (844)
T 3j0a_A 251 NIKDPDQNTFAGLARSSVRHLDLSHGF--------VFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322 (844)
T ss_dssp SSTTGGGTTTTTTTTSCCCEEECTTCC--------CCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEE
T ss_pred ccCCCChhhhhccccCCccEEECCCCc--------ccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECC
Confidence 111 1456666665533 4 33 3 56777777777777777766556667777777777777
Q ss_pred cCcccCceeeeCCCCCCCCcEEEecCCCccccccc-CcccccccceEeeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 481 KNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTM-ENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
+|.+.+.. +..+..+++|+.|++++| .+..++. .+..+++|+.|++++|. +..++. +++|+.|.+++|.
T Consensus 323 ~N~l~~~~-~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~----~~~L~~L~l~~N~ 392 (844)
T 3j0a_A 323 YNLLGELY-SSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNA-LTTIHF----IPSIPDIFLSGNK 392 (844)
T ss_dssp SCCCSCCC-SCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETCC-SCCCSS----CCSCSEEEEESCC
T ss_pred CCCCCccC-HHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCCC-CCcccC----CCCcchhccCCCC
Confidence 77664432 445667777777777776 3554443 46667777777777775 333332 5556666665554
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.93 E-value=7.3e-26 Score=226.11 Aligned_cols=246 Identities=17% Similarity=0.201 Sum_probs=137.7
Q ss_pred CceeEEEecCcccc---cCCCcccCcCCCcEEeccC-CCCc-ccChhhhcccCCcEEEecCCccc-ccchhhhcCCCCcE
Q 035853 278 KFLRLLDLGTIVLD---EYPAGINPLLLLKYLVLNI-PSLK-HLPSSLCNLLSLHTLDMRWSYIH-HTPDEIWKMNELRH 351 (581)
Q Consensus 278 ~~Lr~L~L~~~~l~---~lp~~i~~l~~Lr~L~L~~-~~i~-~lp~~i~~L~~L~~L~l~~~~l~-~lp~~i~~l~~L~~ 351 (581)
.+++.|+++++.+. .+|..++++++|++|++++ |.+. .+|..++++++|++|++++|.+. .+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 34556666666554 3555566666666666663 5544 55556666666666666666554 55555666666666
Q ss_pred eecCCcccCCCCCCccCCCCCCcEeceecCC--CcchhhhCCCC-CCCeEEEeeecccchhchhhhcCCCCCCCEEEeec
Q 035853 352 LNFGSITLPAHPGKCCSSLENLNFISVLHPS--SCTQDILGRLP-SLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVD 428 (581)
Q Consensus 352 L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~-~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~ 428 (581)
|++++|.+.+.+|..++.+++|++|++.++. ...+..++.++ +|+.|+++++. .....|..+..++ |+.|++++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~--l~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR--LTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE--EEEECCGGGGGCC-CSEEECCS
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe--eeccCChHHhCCc-ccEEECcC
Confidence 6666666655555555556666666655555 24555555555 56666666654 3334444454444 55555554
Q ss_pred CCcccCCcccc--cCC-CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEec
Q 035853 429 ERTIALQPSSI--VLP-EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLK 505 (581)
Q Consensus 429 ~~~i~L~~l~l--~lp-~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~ 505 (581)
+. + ..| .+..+++|++|++++|.+++.. +.+..+++|++|++++|.+.+.. +..+..+++|+.|+++
T Consensus 207 N~--------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls 276 (313)
T 1ogq_A 207 NM--------LEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTL-PQGLTQLKFLHSLNVS 276 (313)
T ss_dssp SE--------EEECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECC-CGGGGGCTTCCEEECC
T ss_pred Cc--------ccCcCCHHHhcCCCCCEEECCCCceeeec-CcccccCCCCEEECcCCcccCcC-ChHHhcCcCCCEEECc
Confidence 33 3 233 4555566666666666554332 23555666666666666554332 3345556666666666
Q ss_pred CCCcccccccCcccccccceEeeccCcCCCCC
Q 035853 506 SMFWLEEWTMENDAMPKLESLIINPCAYLKIL 537 (581)
Q Consensus 506 ~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l 537 (581)
+|.....+|.. +.+++|+.|++.+|+.+...
T Consensus 277 ~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 277 FNNLCGEIPQG-GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp SSEEEEECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred CCcccccCCCC-ccccccChHHhcCCCCccCC
Confidence 66433344543 56666666666666655443
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.3e-25 Score=239.60 Aligned_cols=322 Identities=16% Similarity=0.122 Sum_probs=220.8
Q ss_pred CCCCCeeEEEEEecccCCCc-cccc--CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCC-C
Q 035853 220 RSLEDFKRISVCRTVTNFDS-WEHF--DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYP-A 295 (581)
Q Consensus 220 ~~~~~~r~lsl~~~~~~~~~-~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~ 295 (581)
..+..++++.+. +.....+ +..+ +++|++|.+.++.... .. +..|.++++|++|++++|.++.+| .
T Consensus 25 ~l~~~l~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~------i~---~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (570)
T 2z63_A 25 NLPFSTKNLDLS-FNPLRHLGSYSFFSFPELQVLDLSRCEIQT------IE---DGAYQSLSHLSTLILTGNPIQSLALG 94 (570)
T ss_dssp SSCSSCCEEECC-SCCCCEECTTTTTTCSSCCEEECTTCCCCE------EC---TTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred CccccccEEEcc-CCccCccChhHhhCCCCceEEECCCCcCCc------cC---cccccCchhCCEEeCcCCcCCccCHh
Confidence 356789999998 5544433 3344 8999999999987643 33 567899999999999999998655 7
Q ss_pred cccCcCCCcEEeccCCCCcccCh-hhhcccCCcEEEecCCcccc--cchhhhcCCCCcEeecCCcccCCCCCCccCCCCC
Q 035853 296 GINPLLLLKYLVLNIPSLKHLPS-SLCNLLSLHTLDMRWSYIHH--TPDEIWKMNELRHLNFGSITLPAHPGKCCSSLEN 372 (581)
Q Consensus 296 ~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~ 372 (581)
.++.+++|++|++++|.++.+|. .++++++|++|++++|.+.. +|..++++++|++|++++|.+....|..++.+++
T Consensus 95 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 174 (570)
T 2z63_A 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174 (570)
T ss_dssp TTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHT
T ss_pred hhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhc
Confidence 79999999999999999998875 69999999999999998765 7899999999999999998775433333332222
Q ss_pred --------------------------------------------------------------------------------
Q 035853 373 -------------------------------------------------------------------------------- 372 (581)
Q Consensus 373 -------------------------------------------------------------------------------- 372 (581)
T Consensus 175 L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l 254 (570)
T 2z63_A 175 MPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254 (570)
T ss_dssp CTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGG
T ss_pred cchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccc
Confidence
Q ss_pred -----------------------------CcEeceecCC-CcchhhhCCCCCCCeEEEeeecccchhchhhh--------
Q 035853 373 -----------------------------LNFISVLHPS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNN-------- 414 (581)
Q Consensus 373 -----------------------------L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~-------- 414 (581)
|+.|++.++. ..++..+..+ +|+.|++++|. . ..+|..
T Consensus 255 ~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~--~-~~l~~~~l~~L~~L 330 (570)
T 2z63_A 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCK--F-GQFPTLKLKSLKRL 330 (570)
T ss_dssp GGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCB--C-SSCCBCBCSSCCEE
T ss_pred cccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCc--c-cccCcccccccCEE
Confidence 2222222222 2222222222 33333333332 0 111110
Q ss_pred ------------cCCCCCCCEEEeecCCc---------c----cCCccc-----c-cCC-CCCCCCCccEEEEeeccCCC
Q 035853 415 ------------LCPLLHLESLKLVDERT---------I----ALQPSS-----I-VLP-EYQFPPRLIELSLSNTELKY 462 (581)
Q Consensus 415 ------------l~~~~~L~~L~l~~~~~---------i----~L~~l~-----l-~lp-~~~~l~~L~~L~L~~~~l~~ 462 (581)
...+++|+.|+++++.- + .|+.+. + .+| .+..+++|++|++++|.+.+
T Consensus 331 ~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~ 410 (570)
T 2z63_A 331 TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ 410 (570)
T ss_dssp EEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEES
T ss_pred eCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCcccc
Confidence 03456677777765320 0 222221 2 334 45567777777777776655
Q ss_pred CCc-ccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcc-cccccCcccccccceEeeccCcCCCCCccc
Q 035853 463 DPM-PALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWL-EEWTMENDAMPKLESLIINPCAYLKILPEE 540 (581)
Q Consensus 463 ~~~-~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~ 540 (581)
..+ ..+..+++|++|++++|.+.+.. +..+.++++|+.|++++|... ..+|..+..+++|+.|++++|......|..
T Consensus 411 ~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~ 489 (570)
T 2z63_A 411 MSEFSVFLSLRNLIYLDISHTHTRVAF-NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489 (570)
T ss_dssp CTTSCTTTTCTTCCEEECTTSCCEECC-TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred ccchhhhhcCCCCCEEeCcCCcccccc-hhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhh
Confidence 433 45677888888888877665433 445677888999999888533 357778888999999999998765555778
Q ss_pred ccCCCCccEEEeeCCC
Q 035853 541 LWRIKSLTKLELWWPR 556 (581)
Q Consensus 541 l~~l~~L~~L~l~~c~ 556 (581)
+..+++|++|++++|.
T Consensus 490 ~~~l~~L~~L~l~~n~ 505 (570)
T 2z63_A 490 FNSLSSLQVLNMASNQ 505 (570)
T ss_dssp TTTCTTCCEEECCSSC
T ss_pred hhcccCCCEEeCCCCc
Confidence 8889999999999885
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=9.5e-25 Score=247.22 Aligned_cols=306 Identities=18% Similarity=0.150 Sum_probs=241.0
Q ss_pred CCcccccCCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCccc-ccC-CCcccCcCCCcEEeccCCCCc
Q 035853 237 FDSWEHFDTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVL-DEY-PAGINPLLLLKYLVLNIPSLK 314 (581)
Q Consensus 237 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l-~~l-p~~i~~l~~Lr~L~L~~~~i~ 314 (581)
..+|. ..++++.|.+.++.... .. +..|.++++|++|++++|.. ..+ |..++++++|++|+|++|.+.
T Consensus 17 ~~vP~-lp~~l~~LdLs~N~i~~------i~---~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~ 86 (844)
T 3j0a_A 17 TQVPQ-VLNTTERLLLSFNYIRT------VT---ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY 86 (844)
T ss_dssp SCCCS-SCTTCCEEEEESCCCCE------EC---SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC
T ss_pred CCCCC-CCCCcCEEECCCCcCCc------cC---hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc
Confidence 33555 67899999999988753 23 57789999999999999964 455 778999999999999999999
Q ss_pred cc-ChhhhcccCCcEEEecCCcccc-cchh--hhcCCCCcEeecCCcccCCCCC-CccCCCCCCcEeceecCC--Ccchh
Q 035853 315 HL-PSSLCNLLSLHTLDMRWSYIHH-TPDE--IWKMNELRHLNFGSITLPAHPG-KCCSSLENLNFISVLHPS--SCTQD 387 (581)
Q Consensus 315 ~l-p~~i~~L~~L~~L~l~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~--~~~~~ 387 (581)
.+ |..++++++|++|++++|.+.. +|.. ++++++|++|++++|.+.+..+ ..++++++|++|++.++. ...+.
T Consensus 87 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~ 166 (844)
T 3j0a_A 87 FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH 166 (844)
T ss_dssp EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG
T ss_pred ccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH
Confidence 55 8899999999999999998765 5655 8899999999999999976544 578999999999999987 44555
Q ss_pred hhCCC--CCCCeEEEeeecccchhchhhhcCCCCC------CCEEEeecCC---cc------c-----CCccc-------
Q 035853 388 ILGRL--PSLQTFRVHENLSSYQSMLSNNLCPLLH------LESLKLVDER---TI------A-----LQPSS------- 438 (581)
Q Consensus 388 ~l~~l--~~L~~L~l~~~~~~~~~~l~~~l~~~~~------L~~L~l~~~~---~i------~-----L~~l~------- 438 (581)
.++.+ ++|+.|+++++. .....+..+..+.+ |+.|+++++. .+ . +..+.
T Consensus 167 ~l~~l~~~~L~~L~L~~n~--l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~ 244 (844)
T 3j0a_A 167 ELEPLQGKTLSFFSLAANS--LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244 (844)
T ss_dssp GGHHHHHCSSCCCEECCSB--SCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCB
T ss_pred HcccccCCccceEECCCCc--cccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccc
Confidence 66655 899999999997 55555655555554 9999998752 11 0 00000
Q ss_pred -------c-cCC--CCCC--CCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecC
Q 035853 439 -------I-VLP--EYQF--PPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKS 506 (581)
Q Consensus 439 -------l-~lp--~~~~--l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~ 506 (581)
+ ... .+.. .++|+.|++++|.+....+..++.+++|+.|++++|.+.+.. +..+.++++|+.|++++
T Consensus 245 ~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~ 323 (844)
T 3j0a_A 245 AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA-DEAFYGLDNLQVLNLSY 323 (844)
T ss_dssp CSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEEC-TTTTTTCSSCCEEEEES
T ss_pred ccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCC-hHHhcCCCCCCEEECCC
Confidence 0 001 1222 378999999999987777788999999999999988876543 55678899999999999
Q ss_pred CCccccc-ccCcccccccceEeeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 507 MFWLEEW-TMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 507 ~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
|. +..+ +..+..+++|+.|++++|......|..+..+++|++|++++|.
T Consensus 324 N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 324 NL-LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp CC-CSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred CC-CCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC
Confidence 85 5544 7788999999999999997433334568899999999999997
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-24 Score=235.14 Aligned_cols=314 Identities=18% Similarity=0.171 Sum_probs=190.7
Q ss_pred CCCCeeEEEEEecccCCCc-cccc--CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCc-
Q 035853 221 SLEDFKRISVCRTVTNFDS-WEHF--DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAG- 296 (581)
Q Consensus 221 ~~~~~r~lsl~~~~~~~~~-~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~- 296 (581)
....++++.+. +...... +..+ +++|++|.+.++.... .. +..|..+++|++|++++|.++.+|..
T Consensus 24 ~~~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~------~~---~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 93 (549)
T 2z81_A 24 LTAAMKSLDLS-FNKITYIGHGDLRACANLQVLILKSSRINT------IE---GDAFYSLGSLEHLDLSDNHLSSLSSSW 93 (549)
T ss_dssp CCTTCCEEECC-SSCCCEECSSTTSSCTTCCEEECTTSCCCE------EC---TTTTTTCTTCCEEECTTSCCCSCCHHH
T ss_pred CCCCccEEECc-CCccCccChhhhhcCCcccEEECCCCCcCc------cC---hhhccccccCCEEECCCCccCccCHHH
Confidence 34567777777 4333322 3334 6777777777765532 22 35566677777777777776655543
Q ss_pred ccCcCCCcEEeccCCCCcc--cChhhhcccCCcEEEecCCc-ccccc-hhhhcCCCCcEeecCCcccCCCCCCccCCC--
Q 035853 297 INPLLLLKYLVLNIPSLKH--LPSSLCNLLSLHTLDMRWSY-IHHTP-DEIWKMNELRHLNFGSITLPAHPGKCCSSL-- 370 (581)
Q Consensus 297 i~~l~~Lr~L~L~~~~i~~--lp~~i~~L~~L~~L~l~~~~-l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l-- 370 (581)
++++++|++|++++|.++. .|..++++++|++|++++|. +..+| ..+..+++|++|++++|.+.+..|..++.+
T Consensus 94 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 173 (549)
T 2z81_A 94 FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD 173 (549)
T ss_dssp HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcccc
Confidence 6667777777777776663 34566667777777776664 55555 345566666666666665554444444332
Q ss_pred ----------------------CCCcEeceecCC----------------------------------------------
Q 035853 371 ----------------------ENLNFISVLHPS---------------------------------------------- 382 (581)
Q Consensus 371 ----------------------~~L~~L~l~~~~---------------------------------------------- 382 (581)
++|+.|++.++.
T Consensus 174 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L 253 (549)
T 2z81_A 174 IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253 (549)
T ss_dssp EEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTC
T ss_pred CceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccc
Confidence 233333332222
Q ss_pred ---------------------------------------------------------------------Ccchhhh-CCC
Q 035853 383 ---------------------------------------------------------------------SCTQDIL-GRL 392 (581)
Q Consensus 383 ---------------------------------------------------------------------~~~~~~l-~~l 392 (581)
..++..+ +.+
T Consensus 254 ~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l 333 (549)
T 2z81_A 254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHL 333 (549)
T ss_dssp CEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHC
T ss_pred cccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcC
Confidence 1111122 246
Q ss_pred CCCCeEEEeeecccchhchh---hhcCCCCCCCEEEeecCCc---------c----cCC-----cccc-cCC-CCCCCCC
Q 035853 393 PSLQTFRVHENLSSYQSMLS---NNLCPLLHLESLKLVDERT---------I----ALQ-----PSSI-VLP-EYQFPPR 449 (581)
Q Consensus 393 ~~L~~L~l~~~~~~~~~~l~---~~l~~~~~L~~L~l~~~~~---------i----~L~-----~l~l-~lp-~~~~l~~ 449 (581)
++|+.|+++++. ..+..| ..+..+++|+.|+++++.- + .|+ ...+ .+| .+..+++
T Consensus 334 ~~L~~L~Ls~N~--l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~ 411 (549)
T 2z81_A 334 KSLEFLDLSENL--MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEK 411 (549)
T ss_dssp TTCCEEECCSSC--CCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTT
T ss_pred ccccEEEccCCc--cccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhccccc
Confidence 677777777775 444443 3367778888888887430 1 111 1113 455 5555666
Q ss_pred ccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccCcccccccceEeec
Q 035853 450 LIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIIN 529 (581)
Q Consensus 450 L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~ 529 (581)
|++|++++|.++.. +..+ .++|++|++++|.+.+. ...+++|++|++++| .++.+|. ...+++|+.|+++
T Consensus 412 L~~L~Ls~N~l~~l-~~~~--~~~L~~L~Ls~N~l~~~-----~~~l~~L~~L~Ls~N-~l~~ip~-~~~l~~L~~L~Ls 481 (549)
T 2z81_A 412 MRFLNLSSTGIRVV-KTCI--PQTLEVLDVSNNNLDSF-----SLFLPRLQELYISRN-KLKTLPD-ASLFPVLLVMKIS 481 (549)
T ss_dssp CCEEECTTSCCSCC-CTTS--CTTCSEEECCSSCCSCC-----CCCCTTCCEEECCSS-CCSSCCC-GGGCTTCCEEECC
T ss_pred ccEEECCCCCcccc-cchh--cCCceEEECCCCChhhh-----cccCChhcEEECCCC-ccCcCCC-cccCccCCEEecC
Confidence 66666666654321 1111 24666666666655442 257899999999998 6778887 5679999999999
Q ss_pred cCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 530 PCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 530 ~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
+|......|..+..+++|+.|++++||
T Consensus 482 ~N~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 482 RNQLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp SSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred CCccCCcCHHHHhcCcccCEEEecCCC
Confidence 997555555678999999999999887
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.3e-24 Score=224.25 Aligned_cols=291 Identities=16% Similarity=0.096 Sum_probs=211.3
Q ss_pred CCCeeEEEEEecccCCCccccc--CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccC
Q 035853 222 LEDFKRISVCRTVTNFDSWEHF--DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINP 299 (581)
Q Consensus 222 ~~~~r~lsl~~~~~~~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~ 299 (581)
..+++++.+. +.....++ .+ +++|+.|.+.++.... .+ +..+++|++|++++|.++.+| +++
T Consensus 41 l~~L~~L~Ls-~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~-----------~~-~~~l~~L~~L~Ls~N~l~~~~--~~~ 104 (457)
T 3bz5_A 41 LATLTSLDCH-NSSITDMT-GIEKLTGLTKLICTSNNITT-----------LD-LSQNTNLTYLACDSNKLTNLD--VTP 104 (457)
T ss_dssp HTTCCEEECC-SSCCCCCT-TGGGCTTCSEEECCSSCCSC-----------CC-CTTCTTCSEEECCSSCCSCCC--CTT
T ss_pred cCCCCEEEcc-CCCcccCh-hhcccCCCCEEEccCCcCCe-----------Ec-cccCCCCCEEECcCCCCceee--cCC
Confidence 3567777777 44444344 34 7888888888877643 12 677888888888888887764 778
Q ss_pred cCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEecee
Q 035853 300 LLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVL 379 (581)
Q Consensus 300 l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~ 379 (581)
+++|++|++++|.++.+| ++++++|++|++++|.+..+| ++.+++|++|++++|...+.+ .++.+++|+.|++.
T Consensus 105 l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls 178 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCS 178 (457)
T ss_dssp CTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECC
T ss_pred CCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECC
Confidence 888888888888888776 778888888888888877775 777888888888888655454 46788888888888
Q ss_pred cCC-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCCCCCCCCCccEEEEee
Q 035853 380 HPS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLPEYQFPPRLIELSLSN 457 (581)
Q Consensus 380 ~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp~~~~l~~L~~L~L~~ 457 (581)
++. ..++ ++.+++|+.|+++++. ... + .+..+++|+.|+++++. + .+| ++.+++|++|++++
T Consensus 179 ~n~l~~l~--l~~l~~L~~L~l~~N~--l~~-~--~l~~l~~L~~L~Ls~N~--------l~~ip-~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 179 FNKITELD--VSQNKLLNRLNCDTNN--ITK-L--DLNQNIQLTFLDCSSNK--------LTEID-VTPLTQLTYFDCSV 242 (457)
T ss_dssp SSCCCCCC--CTTCTTCCEEECCSSC--CSC-C--CCTTCTTCSEEECCSSC--------CSCCC-CTTCTTCSEEECCS
T ss_pred CCccceec--cccCCCCCEEECcCCc--CCe-e--ccccCCCCCEEECcCCc--------ccccC-ccccCCCCEEEeeC
Confidence 887 4443 7788888888888885 222 2 37778888888888865 6 667 66788999999999
Q ss_pred ccCCCCCcccccCCC-------CCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccC--------cccccc
Q 035853 458 TELKYDPMPALEKLP-------HLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTME--------NDAMPK 522 (581)
Q Consensus 458 ~~l~~~~~~~l~~l~-------~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~--------~~~l~~ 522 (581)
|.+++..+..+.++. +|+.|++++|...+.. + .+.+++|+.|++++|..++.+|.. +..+++
T Consensus 243 N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~-~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~ 319 (457)
T 3bz5_A 243 NPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYF-Q--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPK 319 (457)
T ss_dssp SCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEE-E--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTT
T ss_pred CcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcc-c--ccccccCCEEECCCCcccceeccCCCcceEechhhccc
Confidence 988765433333322 3344444444444333 2 467899999999999877776642 456688
Q ss_pred cceEeeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 523 LESLIINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 523 L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
|+.|++++|. +..+| +.++++|+.|++++|.
T Consensus 320 L~~L~L~~N~-l~~l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 320 LVYLYLNNTE-LTELD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp CCEEECTTCC-CSCCC--CTTCTTCSEEECCSSC
T ss_pred CCEEECCCCc-ccccc--cccCCcCcEEECCCCC
Confidence 8888888876 44564 7889999999999886
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-24 Score=224.41 Aligned_cols=269 Identities=16% Similarity=0.157 Sum_probs=219.7
Q ss_pred cCCceeEEEecCcccccCCCc-ccCcCCCcEEeccCCCCcccCh-hhhcccCCcEEEecCCcccccch-hhhcCCCCcEe
Q 035853 276 WFKFLRLLDLGTIVLDEYPAG-INPLLLLKYLVLNIPSLKHLPS-SLCNLLSLHTLDMRWSYIHHTPD-EIWKMNELRHL 352 (581)
Q Consensus 276 ~~~~Lr~L~L~~~~l~~lp~~-i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L 352 (581)
.++++++|+++++.++.+|.. +..+++|++|++++|.+..+|. .++.+++|++|++++|.+..+|. .++.+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 468999999999999988876 6789999999999999997764 89999999999999999988865 47899999999
Q ss_pred ecCCcccCCCCCCc-cCCCCCCcEeceecCC-C-cchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecC
Q 035853 353 NFGSITLPAHPGKC-CSSLENLNFISVLHPS-S-CTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDE 429 (581)
Q Consensus 353 ~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~-~-~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~ 429 (581)
++++|.+. .+|.. ++++++|++|++.++. . ..+..++.+++|+.|+++++. .... .+..+++|+.|+++++
T Consensus 123 ~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~---~~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 123 VLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR--LTHV---DLSLIPSLFHANVSYN 196 (390)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC--CSBC---CGGGCTTCSEEECCSS
T ss_pred ECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc--CCcc---ccccccccceeecccc
Confidence 99999988 55655 6899999999999998 3 345568899999999999986 2222 2445677777777763
Q ss_pred C--cc----cCCccc-----c-cCCCCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCC
Q 035853 430 R--TI----ALQPSS-----I-VLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFP 497 (581)
Q Consensus 430 ~--~i----~L~~l~-----l-~lp~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~ 497 (581)
. .+ .|+.+. + .+| ...+++|+.|++++|.+++ .+.++.+++|++|++++|.+.+.. +..+..++
T Consensus 197 ~l~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~ 272 (390)
T 3o6n_A 197 LLSTLAIPIAVEELDASHNSINVVR-GPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIM-YHPFVKMQ 272 (390)
T ss_dssp CCSEEECCSSCSEEECCSSCCCEEE-CCCCSSCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEE-SGGGTTCS
T ss_pred cccccCCCCcceEEECCCCeeeecc-ccccccccEEECCCCCCcc--cHHHcCCCCccEEECCCCcCCCcC-hhHccccc
Confidence 2 00 222211 3 333 1235789999999998765 368899999999999998876543 55678899
Q ss_pred CCcEEEecCCCcccccccCcccccccceEeeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 498 SLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 498 ~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
+|+.|++++| .+..++.....+|+|+.|++++|. +..+|..+..+++|++|++++|+
T Consensus 273 ~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 273 RLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp SCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC
T ss_pred cCCEEECCCC-cCcccCcccCCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCCc
Confidence 9999999998 688888888899999999999996 66889888899999999999998
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-24 Score=240.86 Aligned_cols=274 Identities=17% Similarity=0.139 Sum_probs=119.8
Q ss_pred HHhccCCceeEEEecCcccccCCC-cccCcCCCcEEeccCCCCcccC-hhhhcccCCcEEEecCCccccc-chhhhcCCC
Q 035853 272 AICKWFKFLRLLDLGTIVLDEYPA-GINPLLLLKYLVLNIPSLKHLP-SSLCNLLSLHTLDMRWSYIHHT-PDEIWKMNE 348 (581)
Q Consensus 272 ~~~~~~~~Lr~L~L~~~~l~~lp~-~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~ 348 (581)
..|.++++|++|++++|.++.+|. .++++++|++|++++|.+..+| ..++++++|++|++++|.+... |..++++++
T Consensus 67 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 146 (680)
T 1ziw_A 67 ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146 (680)
T ss_dssp THHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTT
T ss_pred HHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhccccc
Confidence 344444445555554444444443 2444444555555444444333 2344444455555544433332 223344444
Q ss_pred CcEeecCCcccCCCCCCcc--CCCCCCcEeceecCC--CcchhhhCCCCCCCeEEEeeecc--cchhchhhhcCCCCCCC
Q 035853 349 LRHLNFGSITLPAHPGKCC--SSLENLNFISVLHPS--SCTQDILGRLPSLQTFRVHENLS--SYQSMLSNNLCPLLHLE 422 (581)
Q Consensus 349 L~~L~l~~~~~~~~~p~~i--~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~--~~~~~l~~~l~~~~~L~ 422 (581)
|++|++++|.+.+..+..+ ..+++|+.|++.++. ...+..+..+++|+.|.+.++.- .....++..+ ..++|+
T Consensus 147 L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l-~~~~L~ 225 (680)
T 1ziw_A 147 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL-ANTSIR 225 (680)
T ss_dssp CCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHH-TTSCCC
T ss_pred CCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHh-hhcccc
Confidence 5555444444433222222 123444444444443 22222233333333333332220 0000011111 123455
Q ss_pred EEEeecCCcccCCcccc--cCC-CCCCCC--CccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCC
Q 035853 423 SLKLVDERTIALQPSSI--VLP-EYQFPP--RLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFP 497 (581)
Q Consensus 423 ~L~l~~~~~i~L~~l~l--~lp-~~~~l~--~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~ 497 (581)
.|+++++. + ..| ++..++ +|++|++++|.+.+..+..++.+++|++|++++|.+.+.. +..+.+++
T Consensus 226 ~L~L~~n~--------l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~ 296 (680)
T 1ziw_A 226 NLSLSNSQ--------LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF-SHSLHGLF 296 (680)
T ss_dssp EEECTTSC--------CCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEEC-TTTTTTCT
T ss_pred EEEccCCc--------ccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccC-hhhhcCCC
Confidence 55555432 3 223 444443 3666666666555444455566666666666655544322 33445555
Q ss_pred CCcEEEecCCCccc-----cccc----CcccccccceEeeccCcCCCCCcccccCCCCccEEEeeCC
Q 035853 498 SLKVMHLKSMFWLE-----EWTM----ENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWP 555 (581)
Q Consensus 498 ~L~~L~l~~~~~l~-----~l~~----~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 555 (581)
+|+.|+++++..-. .+|. .+..+++|+.|++++|......|..+..+++|++|++++|
T Consensus 297 ~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 297 NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363 (680)
T ss_dssp TCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTC
T ss_pred CccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCC
Confidence 66666655432111 1221 3445555566666555543333344555555555555554
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-25 Score=265.80 Aligned_cols=185 Identities=17% Similarity=0.237 Sum_probs=150.5
Q ss_pred hHHHHHHHHHhcCc--eEEEEEEcCCChhHHHHHHhhCCCCCCCCEEEEeCCC---------------------hHHHHH
Q 035853 2 EQRKTALHDYLRNK--RYLIVFEDVISSDVWDYIGKALPDHQNGSRVLAMLTC---------------------SDEIFS 58 (581)
Q Consensus 2 ~~l~~~l~~~L~~k--r~LlVLDDv~~~~~~~~l~~~~~~~~~gs~iivTtr~---------------------~~~~~~ 58 (581)
+++++.+++.|.+| |+||||||||+.++|+.+ ++|||||||||+ .+|||+
T Consensus 221 ~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~ 293 (1249)
T 3sfz_A 221 EEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLE 293 (1249)
T ss_dssp HHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHH
T ss_pred HHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHH
Confidence 46778888888877 999999999999887653 679999999997 189999
Q ss_pred hc-ccccCccccCCC-CChh-hHHhhcCCcchhhhhhccc--c---ceecc----c-cccc---------cc--ccceec
Q 035853 59 LC-RLENGEMIHLDS-VPAG-PLRAKYQERPLVFLYYGRN--S---LVENM----R-LTWR---------IQ--KWPLLF 114 (581)
Q Consensus 59 Lf-~~f~~~~~~~~~-~~~~-~i~~~c~GlPLal~~~g~~--t---~~~~~----~-~~~~---------~~--~~~L~~ 114 (581)
|| +..+. ..++ ++++ +|+++|+|+||||+++|+. + -|+.. + ..|. .+ ..++++
T Consensus 294 l~~~~~~~---~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 370 (1249)
T 3sfz_A 294 ILSLFVNM---KKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSI 370 (1249)
T ss_dssp HHHHHHTS---CSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSSCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHH
T ss_pred HHHHhhCC---ChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcChhHHHHHHHHHhhhhhhhcccccccchHHHHHHHHH
Confidence 99 66321 2334 7889 9999999999999999998 1 11100 0 0110 01 678999
Q ss_pred cccCchhhhHHHHhhhcccCCCceechHHHHHHHHhcCCCCCChHHHHHHHHHHHHhCCceeeeeccCCCCEeEEEeChH
Q 035853 115 SIVELPQHLKLCCLYLSAFRDAFEIATKELYQLWIAEGFIPDNSEKTAEEYLEQLISRGFIKVKKRRAGGTIKTCYISFI 194 (581)
Q Consensus 115 sY~~L~~~lk~cFl~~a~Fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~~L~~~~ll~~~~~~~~g~~~~~~mHdl 194 (581)
||+.||+++|+||+|||+||+++.|+++.++.+|.++ ++.++.++++|+++||++... +|+..+|+|||+
T Consensus 371 s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-------~~~~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l 440 (1249)
T 3sfz_A 371 SVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-------TEEVEDILQEFVNKSLLFCNR---NGKSFCYYLHDL 440 (1249)
T ss_dssp HHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSCEEEE---SSSSEEEECCHH
T ss_pred HHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-------HHHHHHHHHHHHhccceEEec---CCCceEEEecHH
Confidence 9999999999999999999999999999999999765 567899999999999999765 344567999999
Q ss_pred HHHHHHHhcccc
Q 035853 195 TRGMLVLVAEFV 206 (581)
Q Consensus 195 i~dl~~~i~~~e 206 (581)
+|++++..+.++
T Consensus 441 ~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 441 QVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHTGGG
T ss_pred HHHHHHhhhhHH
Confidence 999999998765
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-24 Score=234.26 Aligned_cols=304 Identities=17% Similarity=0.153 Sum_probs=216.2
Q ss_pred CcccccCCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCC-CcccCcCCCcEEeccCCCCccc
Q 035853 238 DSWEHFDTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYP-AGINPLLLLKYLVLNIPSLKHL 316 (581)
Q Consensus 238 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~l 316 (581)
.++..+.+++++|.+.++.... .. +..|..+++|++|++++|.++.++ ..++.+++|++|++++|.+..+
T Consensus 19 ~ip~~~~~~L~~L~Ls~n~l~~------~~---~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 89 (549)
T 2z81_A 19 SIPSGLTAAMKSLDLSFNKITY------IG---HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL 89 (549)
T ss_dssp SCCSCCCTTCCEEECCSSCCCE------EC---SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC
T ss_pred cccccCCCCccEEECcCCccCc------cC---hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc
Confidence 3555557899999999988643 22 467899999999999999998554 6799999999999999999988
Q ss_pred Chh-hhcccCCcEEEecCCcccc--cchhhhcCCCCcEeecCCcccCCCCC-CccCCCCCCcEeceecCC--CcchhhhC
Q 035853 317 PSS-LCNLLSLHTLDMRWSYIHH--TPDEIWKMNELRHLNFGSITLPAHPG-KCCSSLENLNFISVLHPS--SCTQDILG 390 (581)
Q Consensus 317 p~~-i~~L~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~--~~~~~~l~ 390 (581)
|.. ++++++|++|++++|.+.. .|..++++++|++|++++|...+.+| ..++++++|++|++.++. ...+..++
T Consensus 90 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 169 (549)
T 2z81_A 90 SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK 169 (549)
T ss_dssp CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhh
Confidence 865 9999999999999998874 46778999999999999998555665 579999999999999988 44667777
Q ss_pred CCCCCCeEEEeeecccchhchhhh-cCCCCCCCEEEeecCC--c-------c-----cC---------------------
Q 035853 391 RLPSLQTFRVHENLSSYQSMLSNN-LCPLLHLESLKLVDER--T-------I-----AL--------------------- 434 (581)
Q Consensus 391 ~l~~L~~L~l~~~~~~~~~~l~~~-l~~~~~L~~L~l~~~~--~-------i-----~L--------------------- 434 (581)
.+++|+.|+++++. . ..++.. +..+++|+.|+++++. . + .|
T Consensus 170 ~l~~L~~L~l~~n~--~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 246 (549)
T 2z81_A 170 SIRDIHHLTLHLSE--S-AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL 246 (549)
T ss_dssp TCSEEEEEEEECSB--S-TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGG
T ss_pred ccccCceEecccCc--c-cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHH
Confidence 77777777777664 1 222222 2234555555555421 0 0 00
Q ss_pred -------Cc------------------------------ccc---cCC-C---------CCCCCCccEEEEeeccCCCCC
Q 035853 435 -------QP------------------------------SSI---VLP-E---------YQFPPRLIELSLSNTELKYDP 464 (581)
Q Consensus 435 -------~~------------------------------l~l---~lp-~---------~~~l~~L~~L~L~~~~l~~~~ 464 (581)
+. +.+ .+| + ....++|++|++++|.+. ..
T Consensus 247 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~i 325 (549)
T 2z81_A 247 LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LV 325 (549)
T ss_dssp GGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CC
T ss_pred hhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cC
Confidence 00 000 001 0 011245666666666654 33
Q ss_pred cccc-cCCCCCCeEEEecCcccCcee--eeCCCCCCCCcEEEecCCCcccccc---cCcccccccceEeeccCcCCCCCc
Q 035853 465 MPAL-EKLPHLRVLKLKKNSFFGRKL--VCSSGGFPSLKVMHLKSMFWLEEWT---MENDAMPKLESLIINPCAYLKILP 538 (581)
Q Consensus 465 ~~~l-~~l~~L~~L~L~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~l~~l~---~~~~~l~~L~~L~l~~c~~l~~lp 538 (581)
+..+ +.+++|++|++++|.+.+..+ ....+.+++|+.|++++| .++.++ ..+..+++|+.|++++|. +..+|
T Consensus 326 p~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp 403 (549)
T 2z81_A 326 PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRNT-FHPMP 403 (549)
T ss_dssp CHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTCC-CCCCC
T ss_pred CHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCCC-CccCC
Confidence 3333 568888888888887765432 223567888888888887 466554 236778888888888885 55788
Q ss_pred ccccCCCCccEEEeeCCC
Q 035853 539 EELWRIKSLTKLELWWPR 556 (581)
Q Consensus 539 ~~l~~l~~L~~L~l~~c~ 556 (581)
..+..+++|++|++++|.
T Consensus 404 ~~~~~~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 404 DSCQWPEKMRFLNLSSTG 421 (549)
T ss_dssp SCCCCCTTCCEEECTTSC
T ss_pred hhhcccccccEEECCCCC
Confidence 877788888888888776
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.2e-24 Score=214.54 Aligned_cols=260 Identities=16% Similarity=0.171 Sum_probs=139.3
Q ss_pred CceeEEEecCcccccCCC-cccCcCCCcEEeccCCCCccc-ChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecC
Q 035853 278 KFLRLLDLGTIVLDEYPA-GINPLLLLKYLVLNIPSLKHL-PSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFG 355 (581)
Q Consensus 278 ~~Lr~L~L~~~~l~~lp~-~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 355 (581)
+.|++|++++|.++.++. .++++++|++|++++|.++.+ |..++++++|++|++++|.+..+|..+. ++|++|+++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVH 129 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECC
Confidence 456666666666664443 456666666666666666644 5556666666666666666666665443 566666666
Q ss_pred CcccCCCCCCccCCCCCCcEeceecCC-C---cchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCc
Q 035853 356 SITLPAHPGKCCSSLENLNFISVLHPS-S---CTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERT 431 (581)
Q Consensus 356 ~~~~~~~~p~~i~~l~~L~~L~l~~~~-~---~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~ 431 (581)
+|.+....+..++++++|+.|++.++. . ..+..+..+++|+.|+++++. ...+|..+. ++|+.|+++++.
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~---l~~l~~~~~--~~L~~L~l~~n~- 203 (330)
T 1xku_A 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN---ITTIPQGLP--PSLTELHLDGNK- 203 (330)
T ss_dssp SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC---CCSCCSSCC--TTCSEEECTTSC-
T ss_pred CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc---cccCCcccc--ccCCEEECCCCc-
Confidence 666554333445566666666666554 1 334445556666666666553 222333322 456666665543
Q ss_pred ccCCcccc-cC-C-CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCC
Q 035853 432 IALQPSSI-VL-P-EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMF 508 (581)
Q Consensus 432 i~L~~l~l-~l-p-~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 508 (581)
+ .+ | .+..+++|++|++++|.+.+..+..++.+++|++|++++|.+. .++..+..+++|+.|++++|
T Consensus 204 -------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N- 273 (330)
T 1xku_A 204 -------ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV--KVPGGLADHKYIQVVYLHNN- 273 (330)
T ss_dssp -------CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS--SCCTTTTTCSSCCEEECCSS-
T ss_pred -------CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc--cCChhhccCCCcCEEECCCC-
Confidence 4 22 3 4555666666666666555444445555666666666655554 22334455566666666655
Q ss_pred cccccccC-cc------cccccceEeeccCcCCC--CCcccccCCCCccEEEeeCC
Q 035853 509 WLEEWTME-ND------AMPKLESLIINPCAYLK--ILPEELWRIKSLTKLELWWP 555 (581)
Q Consensus 509 ~l~~l~~~-~~------~l~~L~~L~l~~c~~l~--~lp~~l~~l~~L~~L~l~~c 555 (581)
.++.++.. +. ..+.|+.|++.+|+... ..|..+..+++|+.+++++|
T Consensus 274 ~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 274 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred cCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 34444321 11 23555666666665321 23345555566666665554
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-25 Score=244.52 Aligned_cols=170 Identities=16% Similarity=0.153 Sum_probs=137.4
Q ss_pred HHHHHHHHHh---cCceEEEEEEcCCChhHHHHHHhhCCCCCCCCEEEEeCCC------------h-------------H
Q 035853 3 QRKTALHDYL---RNKRYLIVFEDVISSDVWDYIGKALPDHQNGSRVLAMLTC------------S-------------D 54 (581)
Q Consensus 3 ~l~~~l~~~L---~~kr~LlVLDDv~~~~~~~~l~~~~~~~~~gs~iivTtr~------------~-------------~ 54 (581)
++++.+++.| .+||+||||||||+.++|+.+. +|||||||||+ | +
T Consensus 229 eL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~e 301 (1221)
T 1vt4_I 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301 (1221)
T ss_dssp HHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCCHH
T ss_pred HHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHhcCCCeEEEecCccccCCcCHH
Confidence 4566777766 6899999999999999998762 69999999997 1 6
Q ss_pred HHHHhc-ccccCccccCCCCChh-hHHhhcCCcchhhhhhccc--cce-eccccccccc-----ccceeccccCchhhh-
Q 035853 55 EIFSLC-RLENGEMIHLDSVPAG-PLRAKYQERPLVFLYYGRN--SLV-ENMRLTWRIQ-----KWPLLFSIVELPQHL- 123 (581)
Q Consensus 55 ~~~~Lf-~~f~~~~~~~~~~~~~-~i~~~c~GlPLal~~~g~~--t~~-~~~~~~~~~~-----~~~L~~sY~~L~~~l- 123 (581)
|||+|| ++|+... .++. +| |+|+||||+++|+. +.. ... .|+.. ..+|++||+.||+++
T Consensus 302 EA~eLF~~~~g~~~-----eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~e--eW~~~~~~~I~aaLelSYd~Lp~eel 371 (1221)
T 1vt4_I 302 EVKSLLLKYLDCRP-----QDLPREV---LTTNPRRLSIIAESIRDGLATWD--NWKHVNCDKLTTIIESSLNVLEPAEY 371 (1221)
T ss_dssp HHHHHHHHHHCCCT-----TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHH--HHHHCSCHHHHHHHHHHHHHSCTTHH
T ss_pred HHHHHHHHHcCCCH-----HHHHHHH---hCCCHHHHHHHHHHHhCCCCCHH--HHhcCChhHHHHHHHHHHHhCCHHHH
Confidence 999999 6665321 4556 65 99999999999998 110 001 22211 788999999999999
Q ss_pred HHHHhhhcccCCCceechHHHHHHHHhcCCCCCChHHHHHHHHHHHHhCCceeeeeccCCCCEeEEEeChHHHHHHH
Q 035853 124 KLCCLYLSAFRDAFEIATKELYQLWIAEGFIPDNSEKTAEEYLEQLISRGFIKVKKRRAGGTIKTCYISFITRGMLV 200 (581)
Q Consensus 124 k~cFl~~a~Fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~~L~~~~ll~~~~~~~~g~~~~~~mHdli~dl~~ 200 (581)
|+||+|||+||+++.|+++.++.+|+++| ++.++.++++|+++||++... ...+|+|||++++++.
T Consensus 372 K~cFL~LAIFPed~~I~~elLa~LW~aeG------eedAe~~L~eLvdRSLLq~d~-----~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVI------KSDVMVVVNKLHKYSLVEKQP-----KESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHTTSSCTTSCEEHHHHHHHHCSSC------SHHHHHHHHHHHTSSSSSBCS-----SSSEEBCCCHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCCHHHHHHHhcCCC------HHHHHHHHHHHHhhCCEEEeC-----CCCEEEehHHHHHHhc
Confidence 99999999999999999999999999987 245889999999999999842 2257999999999764
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-24 Score=218.58 Aligned_cols=260 Identities=17% Similarity=0.215 Sum_probs=200.2
Q ss_pred ceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccCh-hhhcccCCcEEEecCCccccc-chhhhcCCCCcEeecCC
Q 035853 279 FLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPS-SLCNLLSLHTLDMRWSYIHHT-PDEIWKMNELRHLNFGS 356 (581)
Q Consensus 279 ~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~ 356 (581)
++++++++++.++.+|..+. ++|++|++++|.++.+|. .++++++|++|++++|.+..+ |..++.+++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 67888888888888887665 588889999988887765 688889999999988888777 67788888999999988
Q ss_pred cccCCCCCCccCCCCCCcEeceecCC--CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccC
Q 035853 357 ITLPAHPGKCCSSLENLNFISVLHPS--SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIAL 434 (581)
Q Consensus 357 ~~~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L 434 (581)
|.+. .+|..+. ++|++|++.++. ...+..+..+++|+.|+++++.-......+..+..+++|+.|+++++.
T Consensus 110 n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~---- 182 (330)
T 1xku_A 110 NQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN---- 182 (330)
T ss_dssp SCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC----
T ss_pred CcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc----
Confidence 8876 5666554 688888888887 334455788889999998888621233556677788889999888865
Q ss_pred Ccccc-cCC-CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccc
Q 035853 435 QPSSI-VLP-EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEE 512 (581)
Q Consensus 435 ~~l~l-~lp-~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 512 (581)
+ .+| .+. ++|++|++++|.+++..+..++.+++|+.|++++|.+.+.. +..+..+++|+.|++++| .+..
T Consensus 183 ----l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N-~l~~ 254 (330)
T 1xku_A 183 ----ITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD-NGSLANTPHLRELHLNNN-KLVK 254 (330)
T ss_dssp ----CCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC-TTTGGGSTTCCEEECCSS-CCSS
T ss_pred ----cccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC-hhhccCCCCCCEEECCCC-cCcc
Confidence 6 677 443 78899999888877766777888899999999888765432 334667888999999887 5778
Q ss_pred cccCcccccccceEeeccCcCCCCCcc-ccc------CCCCccEEEeeCCC
Q 035853 513 WTMENDAMPKLESLIINPCAYLKILPE-ELW------RIKSLTKLELWWPR 556 (581)
Q Consensus 513 l~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~------~l~~L~~L~l~~c~ 556 (581)
+|..+..+++|++|++++|+ +..+|. .+. ..++|+.|++.+||
T Consensus 255 lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 255 VPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp CCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred CChhhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCc
Confidence 88888888999999999886 444443 222 24778888998888
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-24 Score=218.91 Aligned_cols=280 Identities=17% Similarity=0.166 Sum_probs=195.6
Q ss_pred cccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccC-CCcccCcCCCcEEeccCCCCccc-Chhhhcc
Q 035853 246 YLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEY-PAGINPLLLLKYLVLNIPSLKHL-PSSLCNL 323 (581)
Q Consensus 246 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L 323 (581)
+++.+.+.++.... . +..+ .++|++|++++|.++.+ |..+.++++|++|++++|.++.+ |..++++
T Consensus 34 ~l~~l~~~~~~l~~------i----p~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 101 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA------V----PKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPL 101 (332)
T ss_dssp ETTEEECCSSCCSS------C----CSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTC
T ss_pred cCCEEECCCCCccc------c----CCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCc
Confidence 56677666655432 1 1111 35778888888887755 34677788888888888877755 5667778
Q ss_pred cCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC-C---cchhhhCCCCCCCeEE
Q 035853 324 LSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS-S---CTQDILGRLPSLQTFR 399 (581)
Q Consensus 324 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~---~~~~~l~~l~~L~~L~ 399 (581)
++|++|++++|.+..+|..+. ++|++|++++|.+....+..++.+++|+.|++.++. . ..+..+..+ +|+.|+
T Consensus 102 ~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~ 178 (332)
T 2ft3_A 102 RKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLR 178 (332)
T ss_dssp TTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCB
T ss_pred CCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEE
Confidence 888888888887777777654 678888888887764444457778888888877776 2 344555556 778888
Q ss_pred EeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC--CCCCCCCccEEEEeeccCCCCCcccccCCCCCCe
Q 035853 400 VHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP--EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRV 476 (581)
Q Consensus 400 l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp--~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~ 476 (581)
++++. ...+|..+. ++|+.|+++++. + .++ .+..+++|++|++++|.+.+..+..++.+++|+.
T Consensus 179 l~~n~---l~~l~~~~~--~~L~~L~l~~n~--------i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 245 (332)
T 2ft3_A 179 ISEAK---LTGIPKDLP--ETLNELHLDHNK--------IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRE 245 (332)
T ss_dssp CCSSB---CSSCCSSSC--SSCSCCBCCSSC--------CCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCE
T ss_pred CcCCC---CCccCcccc--CCCCEEECCCCc--------CCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCE
Confidence 87774 333554443 578888887755 5 444 6778888899999888887766667888899999
Q ss_pred EEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccC-cc------cccccceEeeccCcCC--CCCcccccCCCCc
Q 035853 477 LKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTME-ND------AMPKLESLIINPCAYL--KILPEELWRIKSL 547 (581)
Q Consensus 477 L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~------~l~~L~~L~l~~c~~l--~~lp~~l~~l~~L 547 (581)
|++++|.+. .++..+..+++|+.|++++| .++.++.. +. .+++|+.|++.+|+.. ...|..+..+++|
T Consensus 246 L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L 322 (332)
T 2ft3_A 246 LHLDNNKLS--RVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDR 322 (332)
T ss_dssp EECCSSCCC--BCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCS
T ss_pred EECCCCcCe--ecChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCcccccccchh
Confidence 999888776 33555677888999999887 46665432 22 2577889999998855 3456678888999
Q ss_pred cEEEeeCCC
Q 035853 548 TKLELWWPR 556 (581)
Q Consensus 548 ~~L~l~~c~ 556 (581)
+.+++++|.
T Consensus 323 ~~l~l~~n~ 331 (332)
T 2ft3_A 323 LAIQFGNYK 331 (332)
T ss_dssp TTEEC----
T ss_pred hhhhccccc
Confidence 999988875
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.92 E-value=7e-24 Score=222.59 Aligned_cols=268 Identities=17% Similarity=0.059 Sum_probs=219.8
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcc
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNL 323 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L 323 (581)
++++++|.+.++.... .+.+..+++|++|++++|.++.+| ++.+++|++|++++|.++.+| ++++
T Consensus 41 l~~L~~L~Ls~n~l~~-----------~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l 105 (457)
T 3bz5_A 41 LATLTSLDCHNSSITD-----------MTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPL 105 (457)
T ss_dssp HTTCCEEECCSSCCCC-----------CTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTC
T ss_pred cCCCCEEEccCCCccc-----------ChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCC
Confidence 7899999999987643 246889999999999999999876 899999999999999999886 8899
Q ss_pred cCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC--CcchhhhCCCCCCCeEEEe
Q 035853 324 LSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS--SCTQDILGRLPSLQTFRVH 401 (581)
Q Consensus 324 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~ 401 (581)
++|++|++++|.+..+| ++.+++|++|++++|.+.+ + .++.+++|+.|++.++. ..+ .++.+++|+.|+++
T Consensus 106 ~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls 178 (457)
T 3bz5_A 106 TKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTE-I--DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCS 178 (457)
T ss_dssp TTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSC-C--CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECC
T ss_pred CcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccce-e--ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECC
Confidence 99999999999998887 8899999999999999875 4 38899999999999985 333 57889999999999
Q ss_pred eecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCCCCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEe
Q 035853 402 ENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLK 480 (581)
Q Consensus 402 ~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~ 480 (581)
++. ...++ +..+++|+.|+++++. + .++ ++.+++|++|++++|.+++ . + ++.+++|+.|+++
T Consensus 179 ~n~---l~~l~--l~~l~~L~~L~l~~N~--------l~~~~-l~~l~~L~~L~Ls~N~l~~-i-p-~~~l~~L~~L~l~ 241 (457)
T 3bz5_A 179 FNK---ITELD--VSQNKLLNRLNCDTNN--------ITKLD-LNQNIQLTFLDCSSNKLTE-I-D-VTPLTQLTYFDCS 241 (457)
T ss_dssp SSC---CCCCC--CTTCTTCCEEECCSSC--------CSCCC-CTTCTTCSEEECCSSCCSC-C-C-CTTCTTCSEEECC
T ss_pred CCc---cceec--cccCCCCCEEECcCCc--------CCeec-cccCCCCCEEECcCCcccc-c-C-ccccCCCCEEEee
Confidence 995 33344 7889999999999865 5 444 6788999999999999876 3 2 8899999999999
Q ss_pred cCcccCceeeeCCCCCCCCcEE----------EecCCCcccccccCcccccccceEeeccCcCCCCCcc--------ccc
Q 035853 481 KNSFFGRKLVCSSGGFPSLKVM----------HLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPE--------ELW 542 (581)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~L~~L----------~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~--------~l~ 542 (581)
+|.+.+.. .+.+++|+.| ++++|..+..+| .+.+++|+.|++++|+.++.+|. .+.
T Consensus 242 ~N~l~~~~----~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~ 315 (457)
T 3bz5_A 242 VNPLTELD----VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLS 315 (457)
T ss_dssp SSCCSCCC----CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCT
T ss_pred CCcCCCcC----HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechh
Confidence 99887653 3456665554 555555455555 46789999999999988777664 245
Q ss_pred CCCCccEEEeeCCC
Q 035853 543 RIKSLTKLELWWPR 556 (581)
Q Consensus 543 ~l~~L~~L~l~~c~ 556 (581)
++++|++|++++|.
T Consensus 316 ~~~~L~~L~L~~N~ 329 (457)
T 3bz5_A 316 QNPKLVYLYLNNTE 329 (457)
T ss_dssp TCTTCCEEECTTCC
T ss_pred hcccCCEEECCCCc
Confidence 66788888887775
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-25 Score=222.46 Aligned_cols=242 Identities=17% Similarity=0.139 Sum_probs=215.6
Q ss_pred CCCcEEeccCCCCc---ccChhhhcccCCcEEEecC-Ccc-cccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcE
Q 035853 301 LLLKYLVLNIPSLK---HLPSSLCNLLSLHTLDMRW-SYI-HHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNF 375 (581)
Q Consensus 301 ~~Lr~L~L~~~~i~---~lp~~i~~L~~L~~L~l~~-~~l-~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 375 (581)
.+++.|+++++.+. .+|..++++++|++|++++ +.+ ..+|..++++++|++|++++|.+.+.+|..++++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 58999999999998 6999999999999999995 655 578999999999999999999998889999999999999
Q ss_pred eceecCC--CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCC-CCCEEEeecCCcccCCcccc--cCC-CCCCCCC
Q 035853 376 ISVLHPS--SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLL-HLESLKLVDERTIALQPSSI--VLP-EYQFPPR 449 (581)
Q Consensus 376 L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~-~L~~L~l~~~~~i~L~~l~l--~lp-~~~~l~~ 449 (581)
|++.++. ...+..++.+++|+.|+++++. ....+|..+..+. +|+.|+++++. + .+| .+..++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~--l~~~~p~~l~~l~~~L~~L~L~~N~--------l~~~~~~~~~~l~- 198 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNR--ISGAIPDSYGSFSKLFTSMTISRNR--------LTGKIPPTFANLN- 198 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSC--CEEECCGGGGCCCTTCCEEECCSSE--------EEEECCGGGGGCC-
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCc--ccCcCCHHHhhhhhcCcEEECcCCe--------eeccCChHHhCCc-
Confidence 9999998 5788889999999999999997 6668888999998 99999999855 5 567 777776
Q ss_pred ccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccCcccccccceEeec
Q 035853 450 LIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIIN 529 (581)
Q Consensus 450 L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~ 529 (581)
|++|++++|.+.+..+..++.+++|+.|++++|.+.+.. + .+..+++|++|++++|.....+|..+..+++|+.|+++
T Consensus 199 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 276 (313)
T 1ogq_A 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-G-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276 (313)
T ss_dssp CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG-G-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECC
T ss_pred ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeec-C-cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECc
Confidence 999999999988888889999999999999999886554 2 26778999999999996555789889999999999999
Q ss_pred cCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 530 PCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 530 ~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
+|+....+|.. ..+++|+.+++.+||
T Consensus 277 ~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 277 FNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp SSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred CCcccccCCCC-ccccccChHHhcCCC
Confidence 99877788876 889999999999988
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.3e-24 Score=231.87 Aligned_cols=270 Identities=16% Similarity=0.167 Sum_probs=219.8
Q ss_pred cCCceeEEEecCcccccCCCc-ccCcCCCcEEeccCCCCcccCh-hhhcccCCcEEEecCCcccccchh-hhcCCCCcEe
Q 035853 276 WFKFLRLLDLGTIVLDEYPAG-INPLLLLKYLVLNIPSLKHLPS-SLCNLLSLHTLDMRWSYIHHTPDE-IWKMNELRHL 352 (581)
Q Consensus 276 ~~~~Lr~L~L~~~~l~~lp~~-i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L 352 (581)
.+.++++|+++++.+..+|.. +..+++|++|++++|.+..+|. .++.+++|++|++++|.+..+|.. ++.+++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 467899999999999988876 6789999999999999997764 899999999999999999888765 6899999999
Q ss_pred ecCCcccCCCCCCccCCCCCCcEeceecCC--CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCC
Q 035853 353 NFGSITLPAHPGKCCSSLENLNFISVLHPS--SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDER 430 (581)
Q Consensus 353 ~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~ 430 (581)
++++|.+....+..++++++|++|+++++. ...+..++.+++|+.|++++|. ... + .+..+++|+.|+++++.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~--l~~-~--~~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR--LTH-V--DLSLIPSLFHANVSYNL 203 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC--CSB-C--CGGGCTTCSEEECCSSC
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC--CCC-c--ChhhhhhhhhhhcccCc
Confidence 999999984444446999999999999998 4445578999999999999986 222 2 23446677777776632
Q ss_pred --cc----cCCccc-----c-cCCCCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCC
Q 035853 431 --TI----ALQPSS-----I-VLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPS 498 (581)
Q Consensus 431 --~i----~L~~l~-----l-~lp~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~ 498 (581)
.+ .|+.+. + .+| ....++|+.|++++|.+++ ++.++.+++|+.|++++|.+.+.. +..+..+++
T Consensus 204 l~~l~~~~~L~~L~ls~n~l~~~~-~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~ 279 (597)
T 3oja_B 204 LSTLAIPIAVEELDASHNSINVVR-GPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIM-YHPFVKMQR 279 (597)
T ss_dssp CSEEECCTTCSEEECCSSCCCEEE-CSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEE-SGGGTTCSS
T ss_pred cccccCCchhheeeccCCcccccc-cccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCC-HHHhcCccC
Confidence 00 122211 3 333 1124689999999998865 478999999999999998886654 566889999
Q ss_pred CcEEEecCCCcccccccCcccccccceEeeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 499 LKVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 499 L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
|+.|++++| .+..+|.....+|+|+.|++++|. +..+|..+..+++|+.|++++|+
T Consensus 280 L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 280 LERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp CCEEECTTS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC
T ss_pred CCEEECCCC-CCCCCCcccccCCCCcEEECCCCC-CCccCcccccCCCCCEEECCCCC
Confidence 999999998 688889888899999999999997 55899889999999999999997
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.7e-24 Score=215.03 Aligned_cols=283 Identities=16% Similarity=0.134 Sum_probs=225.9
Q ss_pred CeeEEEEEecccCCCcccccCCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccC-CCcccCcCC
Q 035853 224 DFKRISVCRTVTNFDSWEHFDTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEY-PAGINPLLL 302 (581)
Q Consensus 224 ~~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i~~l~~ 302 (581)
..+.+.+. +.....++..+.++++.|.+.++.... .. +..|.++++|++|++++|.++.+ |..++++++
T Consensus 34 ~l~~l~~~-~~~l~~ip~~~~~~l~~L~l~~n~i~~------~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 103 (332)
T 2ft3_A 34 HLRVVQCS-DLGLKAVPKEISPDTTLLDLQNNDISE------LR---KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRK 103 (332)
T ss_dssp ETTEEECC-SSCCSSCCSCCCTTCCEEECCSSCCCE------EC---TTTTTTCTTCCEEECCSSCCCEECGGGSTTCTT
T ss_pred cCCEEECC-CCCccccCCCCCCCCeEEECCCCcCCc------cC---HhHhhCCCCCcEEECCCCccCccCHhHhhCcCC
Confidence 35566666 444444665557899999999987643 22 46789999999999999999955 778999999
Q ss_pred CcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchh-hhcCCCCcEeecCCcccCC--CCCCccCCCCCCcEecee
Q 035853 303 LKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDE-IWKMNELRHLNFGSITLPA--HPGKCCSSLENLNFISVL 379 (581)
Q Consensus 303 Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~--~~p~~i~~l~~L~~L~l~ 379 (581)
|++|++++|.++.+|..+. ++|++|++++|.+..+|.. +..+++|++|++++|.+.. ..|..++.+ +|+.|++.
T Consensus 104 L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~ 180 (332)
T 2ft3_A 104 LQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS 180 (332)
T ss_dssp CCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC
T ss_pred CCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECc
Confidence 9999999999999998776 8999999999999888865 7889999999999998853 566777777 99999999
Q ss_pred cCC-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC--CCCCCCCccEEEE
Q 035853 380 HPS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP--EYQFPPRLIELSL 455 (581)
Q Consensus 380 ~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp--~~~~l~~L~~L~L 455 (581)
++. ..++..+. ++|+.|+++++. .....+..+..+++|+.|+++++. + .++ ++..+++|++|++
T Consensus 181 ~n~l~~l~~~~~--~~L~~L~l~~n~--i~~~~~~~l~~l~~L~~L~L~~N~--------l~~~~~~~~~~l~~L~~L~L 248 (332)
T 2ft3_A 181 EAKLTGIPKDLP--ETLNELHLDHNK--IQAIELEDLLRYSKLYRLGLGHNQ--------IRMIENGSLSFLPTLRELHL 248 (332)
T ss_dssp SSBCSSCCSSSC--SSCSCCBCCSSC--CCCCCTTSSTTCTTCSCCBCCSSC--------CCCCCTTGGGGCTTCCEEEC
T ss_pred CCCCCccCcccc--CCCCEEECCCCc--CCccCHHHhcCCCCCCEEECCCCc--------CCcCChhHhhCCCCCCEEEC
Confidence 988 55665554 789999999996 555556788999999999999866 6 555 6889999999999
Q ss_pred eeccCCCCCcccccCCCCCCeEEEecCcccCceeeeC-----CCCCCCCcEEEecCCCcc--cccccCcccccccceEee
Q 035853 456 SNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCS-----SGGFPSLKVMHLKSMFWL--EEWTMENDAMPKLESLII 528 (581)
Q Consensus 456 ~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~l--~~l~~~~~~l~~L~~L~l 528 (581)
++|.++ ..+..++.+++|+.|++++|.+........ ...+++|+.|++.+|+.. ...|..+..+++|+.|++
T Consensus 249 ~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l 327 (332)
T 2ft3_A 249 DNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF 327 (332)
T ss_dssp CSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC
T ss_pred CCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhc
Confidence 999986 566779999999999999998765432111 112678999999998743 234566788999999999
Q ss_pred ccCc
Q 035853 529 NPCA 532 (581)
Q Consensus 529 ~~c~ 532 (581)
++|.
T Consensus 328 ~~n~ 331 (332)
T 2ft3_A 328 GNYK 331 (332)
T ss_dssp ----
T ss_pred cccc
Confidence 9886
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-23 Score=233.13 Aligned_cols=293 Identities=16% Similarity=0.126 Sum_probs=208.4
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCC-CcccCcCCCcEEeccCCCCcc-cChhhh
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYP-AGINPLLLLKYLVLNIPSLKH-LPSSLC 321 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~-lp~~i~ 321 (581)
+++|++|.+.++.... .+ ...|..+++|++|++++|.+..+| ..++++++|++|++++|.+.. .|..++
T Consensus 72 l~~L~~L~L~~n~l~~------l~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 142 (680)
T 1ziw_A 72 LPMLKVLNLQHNELSQ------LS---DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV 142 (680)
T ss_dssp CTTCCEEECCSSCCCC------CC---TTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSS
T ss_pred ccCcCEEECCCCccCc------cC---hhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhc
Confidence 6666777766665432 22 356899999999999999998766 679999999999999999885 456788
Q ss_pred cccCCcEEEecCCcccccchh-h--hcCCCCcEeecCCcccCCCCCCccCCCCC--------------------------
Q 035853 322 NLLSLHTLDMRWSYIHHTPDE-I--WKMNELRHLNFGSITLPAHPGKCCSSLEN-------------------------- 372 (581)
Q Consensus 322 ~L~~L~~L~l~~~~l~~lp~~-i--~~l~~L~~L~l~~~~~~~~~p~~i~~l~~-------------------------- 372 (581)
++++|++|++++|.+..++.. + ..+++|++|++++|.+.+..|..++.+.+
T Consensus 143 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~ 222 (680)
T 1ziw_A 143 QLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANT 222 (680)
T ss_dssp CCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTS
T ss_pred ccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhc
Confidence 999999999999988887754 3 35689999999999988766666665544
Q ss_pred -CcEeceecCC--CcchhhhCCCC--CCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc--cCC-CC
Q 035853 373 -LNFISVLHPS--SCTQDILGRLP--SLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI--VLP-EY 444 (581)
Q Consensus 373 -L~~L~l~~~~--~~~~~~l~~l~--~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l--~lp-~~ 444 (581)
|+.|++.++. ...+..+..++ +|+.|+++++. .....+..+..+++|+.|+++++. + ..| ++
T Consensus 223 ~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~n~--------l~~~~~~~~ 292 (680)
T 1ziw_A 223 SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN--LNVVGNDSFAWLPQLEYFFLEYNN--------IQHLFSHSL 292 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC--CCEECTTTTTTCTTCCEEECCSCC--------BSEECTTTT
T ss_pred cccEEEccCCcccccChhHhhccCcCCCCEEECCCCC--cCccCcccccCcccccEeeCCCCc--------cCccChhhh
Confidence 5555555554 22334444443 38888888775 445556677788888888888755 5 345 78
Q ss_pred CCCCCccEEEEeeccCCC-----CCcc----cccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCC-------
Q 035853 445 QFPPRLIELSLSNTELKY-----DPMP----ALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMF------- 508 (581)
Q Consensus 445 ~~l~~L~~L~L~~~~l~~-----~~~~----~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~------- 508 (581)
..+++|++|++++|...+ ..+. .++.+++|++|++++|.+.+.. +..+.++++|++|++++|.
T Consensus 293 ~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~~~~~~l~ 371 (680)
T 1ziw_A 293 HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK-SNMFTGLINLKYLSLSNSFTSLRTLT 371 (680)
T ss_dssp TTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCC-TTTTTTCTTCCEEECTTCBSCCCEEC
T ss_pred cCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCC-hhHhccccCCcEEECCCCchhhhhcc
Confidence 888999999988765332 1111 5678899999999988876543 4446677777777777652
Q ss_pred --------------------ccccc-ccCcccccccceEeeccCcCCCCCc-ccccCCCCccEEEeeCCC
Q 035853 509 --------------------WLEEW-TMENDAMPKLESLIINPCAYLKILP-EELWRIKSLTKLELWWPR 556 (581)
Q Consensus 509 --------------------~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~ 556 (581)
.+..+ |..+..+++|+.|++++|.....+| ..+..+++|++|++++|.
T Consensus 372 ~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~ 441 (680)
T 1ziw_A 372 NETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441 (680)
T ss_dssp TTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS
T ss_pred hhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC
Confidence 11111 3345567777777777776554454 466777777777777775
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.6e-24 Score=213.21 Aligned_cols=218 Identities=17% Similarity=0.178 Sum_probs=178.4
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcc
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNL 323 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L 323 (581)
.++++.|.+.++.... . +..+.++++|++|++++|.++.+|..++++++|++|++++|.++.+|..++++
T Consensus 80 ~~~l~~L~L~~n~l~~-------l---p~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l 149 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQ-------F---PDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASL 149 (328)
T ss_dssp STTCCEEEEESSCCSS-------C---CSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGC
T ss_pred ccceeEEEccCCCchh-------c---ChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcC
Confidence 4678888888877643 2 35567799999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEecCC-cccccchhhhc---------CCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC-CcchhhhCCC
Q 035853 324 LSLHTLDMRWS-YIHHTPDEIWK---------MNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRL 392 (581)
Q Consensus 324 ~~L~~L~l~~~-~l~~lp~~i~~---------l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l 392 (581)
++|++|++++| .+..+|..++. +++|++|++++|.+. .+|..++++++|++|++.++. ..++..++.+
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l 228 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHL 228 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGC
T ss_pred cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccC
Confidence 99999999998 67888887765 899999999999887 788888888899999988888 6677778888
Q ss_pred CCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc--cCC-CCCCCCCccEEEEeeccCCCCCccccc
Q 035853 393 PSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI--VLP-EYQFPPRLIELSLSNTELKYDPMPALE 469 (581)
Q Consensus 393 ~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l--~lp-~~~~l~~L~~L~L~~~~l~~~~~~~l~ 469 (581)
++|+.|++++|. ....+|..+..+++|+.|+++++. + .+| ++..+++|++|+|++|.+.+..|..++
T Consensus 229 ~~L~~L~Ls~n~--~~~~~p~~~~~l~~L~~L~L~~n~--------~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 229 PKLEELDLRGCT--ALRNYPPIFGGRAPLKRLILKDCS--------NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp TTCCEEECTTCT--TCCBCCCCTTCCCCCCEEECTTCT--------TCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred CCCCEEECcCCc--chhhhHHHhcCCCCCCEEECCCCC--------chhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence 888888888876 666677777777777777777644 3 566 677777777777777777777777777
Q ss_pred CCCCCCeEEEecC
Q 035853 470 KLPHLRVLKLKKN 482 (581)
Q Consensus 470 ~l~~L~~L~L~~~ 482 (581)
++++|+.+.+..+
T Consensus 299 ~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 299 QLPANCIILVPPH 311 (328)
T ss_dssp GSCTTCEEECCGG
T ss_pred hccCceEEeCCHH
Confidence 7777777777633
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-22 Score=223.08 Aligned_cols=326 Identities=17% Similarity=0.115 Sum_probs=223.3
Q ss_pred CCCCCCeeEEEEEecccCCCcc-ccc--CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCC
Q 035853 219 DRSLEDFKRISVCRTVTNFDSW-EHF--DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPA 295 (581)
Q Consensus 219 ~~~~~~~r~lsl~~~~~~~~~~-~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~ 295 (581)
...+..+++|.+. .+....++ ..+ +++|++|.+.++.... .. +..|.++++|++|+|++|+++.+|.
T Consensus 48 ~~lp~~~~~LdLs-~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~------i~---~~~f~~L~~L~~L~Ls~N~l~~l~~ 117 (635)
T 4g8a_A 48 DNLPFSTKNLDLS-FNPLRHLGSYSFFSFPELQVLDLSRCEIQT------IE---DGAYQSLSHLSTLILTGNPIQSLAL 117 (635)
T ss_dssp SSSCTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECTTCCCCE------EC---TTTTTTCTTCCEEECTTCCCCEECG
T ss_pred CCCCcCCCEEEee-CCCCCCCCHHHHhCCCCCCEEECCCCcCCC------cC---hhHhcCCCCCCEEEccCCcCCCCCH
Confidence 3467789999998 55554444 345 8999999999987643 33 5678999999999999999997774
Q ss_pred -cccCcCCCcEEeccCCCCcccCh-hhhcccCCcEEEecCCcccc--cchhhhcCCCCcEeecCCcccCCCCCCcc----
Q 035853 296 -GINPLLLLKYLVLNIPSLKHLPS-SLCNLLSLHTLDMRWSYIHH--TPDEIWKMNELRHLNFGSITLPAHPGKCC---- 367 (581)
Q Consensus 296 -~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~p~~i---- 367 (581)
.|.++++|++|++++|.++.+|. .++++++|++|++++|.+.. +|..++.+++|++|++++|.+.+..|..+
T Consensus 118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 197 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 197 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchh
Confidence 57899999999999999998875 48999999999999997754 57788899999999999886643111110
Q ss_pred --------------------------------------------------------------------------------
Q 035853 368 -------------------------------------------------------------------------------- 367 (581)
Q Consensus 368 -------------------------------------------------------------------------------- 367 (581)
T Consensus 198 ~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~ 277 (635)
T 4g8a_A 198 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 277 (635)
T ss_dssp TCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGG
T ss_pred hhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccccc
Confidence
Q ss_pred -----------------------------------------------CCCCCCcEeceecCC-Cc---------------
Q 035853 368 -----------------------------------------------SSLENLNFISVLHPS-SC--------------- 384 (581)
Q Consensus 368 -----------------------------------------------~~l~~L~~L~l~~~~-~~--------------- 384 (581)
....+|+.|++..+. ..
T Consensus 278 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~ 357 (635)
T 4g8a_A 278 LCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFT 357 (635)
T ss_dssp GGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEE
T ss_pred ccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccc
Confidence 001122222222221 00
Q ss_pred -----chhhhCCCCCCCeEEEeeecccchhch-----------------------hhhcCCCCCCCEEEeecCCc-----
Q 035853 385 -----TQDILGRLPSLQTFRVHENLSSYQSML-----------------------SNNLCPLLHLESLKLVDERT----- 431 (581)
Q Consensus 385 -----~~~~l~~l~~L~~L~l~~~~~~~~~~l-----------------------~~~l~~~~~L~~L~l~~~~~----- 431 (581)
.+.....+++|+.|+++.+.-...... +..+..+++|+.+++..+..
T Consensus 358 ~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 437 (635)
T 4g8a_A 358 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE 437 (635)
T ss_dssp SCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTS
T ss_pred cccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccc
Confidence 001112356777777776641111111 22333444555555543110
Q ss_pred ---c-cC--------Ccccc--cCC-CCCCCCCccEEEEeeccCCC-CCcccccCCCCCCeEEEecCcccCceeeeCCCC
Q 035853 432 ---I-AL--------QPSSI--VLP-EYQFPPRLIELSLSNTELKY-DPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGG 495 (581)
Q Consensus 432 ---i-~L--------~~l~l--~lp-~~~~l~~L~~L~L~~~~l~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~ 495 (581)
+ .+ ....+ ..| .+..+++|+.|++++|.... ..+..++.+++|++|+|++|.+.+.. +..+.+
T Consensus 438 ~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~-~~~f~~ 516 (635)
T 4g8a_A 438 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS-PTAFNS 516 (635)
T ss_dssp SCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC-TTTTTT
T ss_pred ccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcC-hHHHcC
Confidence 0 11 11112 223 56678889999998886433 34567888999999999988876543 566788
Q ss_pred CCCCcEEEecCCCcccccc-cCcccccccceEeeccCcCCCCCcccccCC-CCccEEEeeCCC
Q 035853 496 FPSLKVMHLKSMFWLEEWT-MENDAMPKLESLIINPCAYLKILPEELWRI-KSLTKLELWWPR 556 (581)
Q Consensus 496 ~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l-~~L~~L~l~~c~ 556 (581)
+++|+.|+|++| .+..++ ..+..+++|+.|++++|......|..+..+ ++|+.|++++||
T Consensus 517 l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 517 LSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp CTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 999999999998 566664 457889999999999998666667788887 689999998865
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.9e-23 Score=210.17 Aligned_cols=263 Identities=17% Similarity=0.201 Sum_probs=150.1
Q ss_pred eEEEecCcccccCCCcccCcCCCcEEeccCCCCcccCh-hhhcccCCcEEEecCCcccccc-hhhhcCCCCcEeecCCcc
Q 035853 281 RLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPS-SLCNLLSLHTLDMRWSYIHHTP-DEIWKMNELRHLNFGSIT 358 (581)
Q Consensus 281 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~ 358 (581)
.+.+.+++.++.+|..+. ++|++|++++|.++.+|. .++++++|++|++++|.+..++ ..+..+++|++|++++|.
T Consensus 34 ~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 34 GICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp SEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred eEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 345555555555555443 255555555555554443 4555555555555555554443 235555555555555555
Q ss_pred cCCCCCCccCCCCCCcEeceecCC-Ccchh--hhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCC
Q 035853 359 LPAHPGKCCSSLENLNFISVLHPS-SCTQD--ILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQ 435 (581)
Q Consensus 359 ~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~--~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~ 435 (581)
+....+..++++++|++|++.++. ..++. .+..+++|+.|+++++. ......+..+..+++|+.|+++++.
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~n~----- 185 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD-TFTKIQRKDFAGLTFLEELEIDASD----- 185 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS-SCCEECTTTTTTCCEEEEEEEEETT-----
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCc-cccccCHHHccCCCCCCEEECCCCC-----
Confidence 542222224555555555555554 33332 35555666666666552 0122223445556666666666544
Q ss_pred cccc-c-CC-CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeee--CCCCCCCCcEEEecCCCcc
Q 035853 436 PSSI-V-LP-EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVC--SSGGFPSLKVMHLKSMFWL 510 (581)
Q Consensus 436 ~l~l-~-lp-~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~l 510 (581)
+ . .| .+..+++|++|++++|.+.......++.+++|+.|++++|.+.+..+.. .....+.++.+++.++. +
T Consensus 186 ---l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~-l 261 (353)
T 2z80_A 186 ---LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK-I 261 (353)
T ss_dssp ---CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCB-C
T ss_pred ---cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccc-c
Confidence 4 2 34 6667777777777777654332233445777777777777665433111 12335667777777663 3
Q ss_pred c-----ccccCcccccccceEeeccCcCCCCCcccc-cCCCCccEEEeeCCC
Q 035853 511 E-----EWTMENDAMPKLESLIINPCAYLKILPEEL-WRIKSLTKLELWWPR 556 (581)
Q Consensus 511 ~-----~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~c~ 556 (581)
. .+|..+..+++|+.|++++|. +..+|..+ ..+++|++|++++|+
T Consensus 262 ~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 262 TDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CHHHHHHHHHHHHTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCcchhhhHHHHhcccCCCEEECCCCC-CCccCHHHHhcCCCCCEEEeeCCC
Confidence 2 356667788889999998886 55788764 788899999998886
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-22 Score=202.81 Aligned_cols=104 Identities=24% Similarity=0.315 Sum_probs=45.6
Q ss_pred ceeEEEecCcccccCCCc-ccCcCCCcEEeccCCCCccc---ChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeec
Q 035853 279 FLRLLDLGTIVLDEYPAG-INPLLLLKYLVLNIPSLKHL---PSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNF 354 (581)
Q Consensus 279 ~Lr~L~L~~~~l~~lp~~-i~~l~~Lr~L~L~~~~i~~l---p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 354 (581)
+|++|+++++.++.+|.. +.++++|++|++++|.++.+ |..+..+++|++|++++|.+..+|..+..+++|++|++
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l 108 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 108 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEEC
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEEC
Confidence 444444444444444432 34444444444444444422 33444444444444444444444444444444444444
Q ss_pred CCcccCCCCC-CccCCCCCCcEeceecCC
Q 035853 355 GSITLPAHPG-KCCSSLENLNFISVLHPS 382 (581)
Q Consensus 355 ~~~~~~~~~p-~~i~~l~~L~~L~l~~~~ 382 (581)
++|.+....+ ..+..+++|+.|++.++.
T Consensus 109 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 137 (306)
T 2z66_A 109 QHSNLKQMSEFSVFLSLRNLIYLDISHTH 137 (306)
T ss_dssp TTSEEESSTTTTTTTTCTTCCEEECTTSC
T ss_pred CCCcccccccchhhhhccCCCEEECCCCc
Confidence 4444432221 233444444444444433
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-22 Score=205.48 Aligned_cols=248 Identities=16% Similarity=0.174 Sum_probs=182.7
Q ss_pred CceeEEEecCcccccCCC-cccCcCCCcEEeccCCCCcccC-hhhhcccCCcEEEecCCcccccchh-hhcCCCCcEeec
Q 035853 278 KFLRLLDLGTIVLDEYPA-GINPLLLLKYLVLNIPSLKHLP-SSLCNLLSLHTLDMRWSYIHHTPDE-IWKMNELRHLNF 354 (581)
Q Consensus 278 ~~Lr~L~L~~~~l~~lp~-~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l 354 (581)
++|++|+++++.++.+|. .+.++++|++|++++|.++.++ ..++++++|++|++++|.+..+|.. ++.+++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 478888888888876654 6778888888888888887654 5578888888888888888777766 677888888888
Q ss_pred CCcccCCCCCC--ccCCCCCCcEeceecCC--Ccc-hhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecC
Q 035853 355 GSITLPAHPGK--CCSSLENLNFISVLHPS--SCT-QDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDE 429 (581)
Q Consensus 355 ~~~~~~~~~p~--~i~~l~~L~~L~l~~~~--~~~-~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~ 429 (581)
++|.+. .+|. .++.+++|++|++.++. ... +..++.+++|+.|+++++. .....+..+..+++|+.|+++++
T Consensus 132 ~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~l~~l~~L~~L~l~~n 208 (353)
T 2z80_A 132 LGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD--LQSYEPKSLKSIQNVSHLILHMK 208 (353)
T ss_dssp TTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT--CCEECTTTTTTCSEEEEEEEECS
T ss_pred CCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC--cCccCHHHHhccccCCeecCCCC
Confidence 888776 4544 57788888888888774 333 4567788888888888886 55556777888888888888875
Q ss_pred CcccCCcccc-cCC--CCCCCCCccEEEEeeccCCCCCccc---ccCCCCCCeEEEecCcccCce---eeeCCCCCCCCc
Q 035853 430 RTIALQPSSI-VLP--EYQFPPRLIELSLSNTELKYDPMPA---LEKLPHLRVLKLKKNSFFGRK---LVCSSGGFPSLK 500 (581)
Q Consensus 430 ~~i~L~~l~l-~lp--~~~~l~~L~~L~L~~~~l~~~~~~~---l~~l~~L~~L~L~~~~~~~~~---~~~~~~~~~~L~ 500 (581)
. + .+| .+..+++|++|++++|.+++..+.. ....+.++.++++++.+.+.. ++..+..+++|+
T Consensus 209 ~--------l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~ 280 (353)
T 2z80_A 209 Q--------HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLL 280 (353)
T ss_dssp C--------STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCC
T ss_pred c--------cccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCC
Confidence 5 4 455 3445788999999998877644433 334677888888877665432 233456788999
Q ss_pred EEEecCCCcccccccCc-ccccccceEeeccCcCCCCC
Q 035853 501 VMHLKSMFWLEEWTMEN-DAMPKLESLIINPCAYLKIL 537 (581)
Q Consensus 501 ~L~l~~~~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~l 537 (581)
.|++++| .++.+|... +.+++|++|++++|+.....
T Consensus 281 ~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 281 ELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred EEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 9999988 577888764 78999999999999855443
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-21 Score=205.92 Aligned_cols=283 Identities=22% Similarity=0.208 Sum_probs=164.6
Q ss_pred CCCCeeEEEEEecccCCCcccccCCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccCc
Q 035853 221 SLEDFKRISVCRTVTNFDSWEHFDTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPL 300 (581)
Q Consensus 221 ~~~~~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l 300 (581)
.+...+++.+. +.....++. ..++|+.|.+.++...... . -.++|++|++++|.++.+| .++++
T Consensus 89 ~~~~L~~L~l~-~n~l~~lp~-~~~~L~~L~l~~n~l~~l~----------~---~~~~L~~L~L~~n~l~~lp-~~~~l 152 (454)
T 1jl5_A 89 LPPHLESLVAS-CNSLTELPE-LPQSLKSLLVDNNNLKALS----------D---LPPLLEYLGVSNNQLEKLP-ELQNS 152 (454)
T ss_dssp CCTTCSEEECC-SSCCSSCCC-CCTTCCEEECCSSCCSCCC----------S---CCTTCCEEECCSSCCSSCC-CCTTC
T ss_pred CcCCCCEEEcc-CCcCCcccc-ccCCCcEEECCCCccCccc----------C---CCCCCCEEECcCCCCCCCc-ccCCC
Confidence 34567777776 444332332 2567777777766553211 1 1156777777777777766 47777
Q ss_pred CCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceec
Q 035853 301 LLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLH 380 (581)
Q Consensus 301 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~ 380 (581)
++|++|++++|.++.+|..+ .+|++|++++|.+..+| .++.+++|++|++++|.+.+ +|... ++|++|++.+
T Consensus 153 ~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~ 224 (454)
T 1jl5_A 153 SFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGN 224 (454)
T ss_dssp TTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCS
T ss_pred CCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcC
Confidence 77777777777777666543 46777777777776676 46777777777777776653 44322 4677777766
Q ss_pred CC-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC-CC-------------
Q 035853 381 PS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP-EY------------- 444 (581)
Q Consensus 381 ~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp-~~------------- 444 (581)
+. ..++ .++.+++|+.|+++++. ...+|.. .++|+.|+++++. + .+| +.
T Consensus 225 n~l~~lp-~~~~l~~L~~L~l~~N~---l~~l~~~---~~~L~~L~l~~N~--------l~~l~~~~~~L~~L~ls~N~l 289 (454)
T 1jl5_A 225 NILEELP-ELQNLPFLTTIYADNNL---LKTLPDL---PPSLEALNVRDNY--------LTDLPELPQSLTFLDVSENIF 289 (454)
T ss_dssp SCCSSCC-CCTTCTTCCEEECCSSC---CSSCCSC---CTTCCEEECCSSC--------CSCCCCCCTTCCEEECCSSCC
T ss_pred CcCCccc-ccCCCCCCCEEECCCCc---CCccccc---ccccCEEECCCCc--------ccccCcccCcCCEEECcCCcc
Confidence 66 4444 36667777777777664 2223321 2556666666533 2 222 11
Q ss_pred ----CCCCCccEEEEeeccCCCCCcccccCC-CCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccCccc
Q 035853 445 ----QFPPRLIELSLSNTELKYDPMPALEKL-PHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDA 519 (581)
Q Consensus 445 ----~~l~~L~~L~L~~~~l~~~~~~~l~~l-~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~ 519 (581)
...++|++|++++|.+++ +..+ ++|++|++++|.+.+ ++ ..+++|+.|++++| .++.+|. .
T Consensus 290 ~~l~~~~~~L~~L~l~~N~l~~-----i~~~~~~L~~L~Ls~N~l~~--lp---~~~~~L~~L~L~~N-~l~~lp~---~ 355 (454)
T 1jl5_A 290 SGLSELPPNLYYLNASSNEIRS-----LCDLPPSLEELNVSNNKLIE--LP---ALPPRLERLIASFN-HLAEVPE---L 355 (454)
T ss_dssp SEESCCCTTCCEEECCSSCCSE-----ECCCCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSS-CCSCCCC---C
T ss_pred CcccCcCCcCCEEECcCCcCCc-----ccCCcCcCCEEECCCCcccc--cc---ccCCcCCEEECCCC-ccccccc---h
Confidence 011345555555554332 2233 477778877776654 12 23678888888887 5667766 4
Q ss_pred ccccceEeeccCcCCC--CCcccccCC-------------CCccEEEeeCCC
Q 035853 520 MPKLESLIINPCAYLK--ILPEELWRI-------------KSLTKLELWWPR 556 (581)
Q Consensus 520 l~~L~~L~l~~c~~l~--~lp~~l~~l-------------~~L~~L~l~~c~ 556 (581)
+++|++|++++|+... .+|.++..+ ++|+.|++++|+
T Consensus 356 l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 356 PQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp CTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------
T ss_pred hhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence 7888888888887655 677777666 788888888876
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=6e-22 Score=207.59 Aligned_cols=239 Identities=19% Similarity=0.163 Sum_probs=117.6
Q ss_pred eeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccC-hhhhcccCCcEEEecCCcccccc-hhhhcCCCCcEeecCCc
Q 035853 280 LRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLP-SSLCNLLSLHTLDMRWSYIHHTP-DEIWKMNELRHLNFGSI 357 (581)
Q Consensus 280 Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~ 357 (581)
.+.++..+..++.+|..+. .++++|+|++|.+..++ ..+.++++|++|++++|.+..++ ..+..+++|++|++++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 3455555555666665554 45666666666666443 45566666666666666555554 33555666666666666
Q ss_pred ccCCCCCCccCCCCCCcEeceecCC-Ccch-hhhCCCCCCCeEEEeeecccchhchh-hhcCCCCCCCEEEeecCCcccC
Q 035853 358 TLPAHPGKCCSSLENLNFISVLHPS-SCTQ-DILGRLPSLQTFRVHENLSSYQSMLS-NNLCPLLHLESLKLVDERTIAL 434 (581)
Q Consensus 358 ~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~l~-~~l~~~~~L~~L~l~~~~~i~L 434 (581)
.+....+..+..+++|++|++.++. ..++ ..+..+++|+.|+++++. ....++ ..+..+++|+.|+++++.
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~--~l~~i~~~~~~~l~~L~~L~L~~n~---- 196 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK--RLSYISEGAFEGLSNLRYLNLAMCN---- 196 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT--TCCEECTTTTTTCSSCCEEECTTSC----
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCC--CcceeCcchhhcccccCeecCCCCc----
Confidence 6553333345556666666665555 2222 234555556666555543 222222 234444455555554433
Q ss_pred Ccccc-cCCCCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCccccc
Q 035853 435 QPSSI-VLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEW 513 (581)
Q Consensus 435 ~~l~l-~lp~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 513 (581)
+ .+|.+..+++|++|+|++|.++...+..+.++++|+.|++++|.+.+.. +..+..+++|+.|+|++| .+..+
T Consensus 197 ----l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N-~l~~~ 270 (440)
T 3zyj_A 197 ----LREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE-RNAFDNLQSLVEINLAHN-NLTLL 270 (440)
T ss_dssp ----CSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTSSTTCTTCCEEECTTS-CCCCC
T ss_pred ----CccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEC-hhhhcCCCCCCEEECCCC-CCCcc
Confidence 3 3443344445555555555444433444444455555555444433221 223344444444444444 23333
Q ss_pred cc-CcccccccceEeeccCc
Q 035853 514 TM-ENDAMPKLESLIINPCA 532 (581)
Q Consensus 514 ~~-~~~~l~~L~~L~l~~c~ 532 (581)
+. .+..+++|+.|++++|+
T Consensus 271 ~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 271 PHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CTTTTSSCTTCCEEECCSSC
T ss_pred ChhHhccccCCCEEEcCCCC
Confidence 32 23344444444444443
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.88 E-value=8.2e-22 Score=207.31 Aligned_cols=239 Identities=18% Similarity=0.151 Sum_probs=124.6
Q ss_pred eeEEEecCcccccCCCcccCcCCCcEEeccCCCCccc-ChhhhcccCCcEEEecCCcccccc-hhhhcCCCCcEeecCCc
Q 035853 280 LRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHL-PSSLCNLLSLHTLDMRWSYIHHTP-DEIWKMNELRHLNFGSI 357 (581)
Q Consensus 280 Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~ 357 (581)
.+.++.++..++.+|..+. ++|++|+|++|.++.+ |..++++++|++|++++|.+..++ ..+..+++|++|++++|
T Consensus 56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 3556666666666665554 4667777777766644 455666777777777776665554 44566667777777776
Q ss_pred ccCCCCCCccCCCCCCcEeceecCC-Ccch-hhhCCCCCCCeEEEeeecccchhchhh-hcCCCCCCCEEEeecCCcccC
Q 035853 358 TLPAHPGKCCSSLENLNFISVLHPS-SCTQ-DILGRLPSLQTFRVHENLSSYQSMLSN-NLCPLLHLESLKLVDERTIAL 434 (581)
Q Consensus 358 ~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~l~~-~l~~~~~L~~L~l~~~~~i~L 434 (581)
.+....+..++.+++|++|++.++. ..++ ..+..+++|+.|+++++. ....++. .+..+++|+.|+++++.
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~--~l~~i~~~~~~~l~~L~~L~L~~n~---- 207 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK--KLEYISEGAFEGLFNLKYLNLGMCN---- 207 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT--TCCEECTTTTTTCTTCCEEECTTSC----
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCC--CccccChhhccCCCCCCEEECCCCc----
Confidence 6654333446666666666666665 3222 245566666666666543 2222222 34444555555555433
Q ss_pred Ccccc-cCCCCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCccccc
Q 035853 435 QPSSI-VLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEW 513 (581)
Q Consensus 435 ~~l~l-~lp~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 513 (581)
+ .+|.+..+++|++|++++|.+++..+..+.++++|+.|++++|.+.+.. +..+..+++|+.|++++| .+..+
T Consensus 208 ----l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N-~l~~~ 281 (452)
T 3zyi_A 208 ----IKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE-RNAFDGLASLVELNLAHN-NLSSL 281 (452)
T ss_dssp ----CSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSS-CCSCC
T ss_pred ----ccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceEC-HHHhcCCCCCCEEECCCC-cCCcc
Confidence 3 3343444445555555555444444444445555555555444433221 223344444444444444 23333
Q ss_pred cc-CcccccccceEeeccCc
Q 035853 514 TM-ENDAMPKLESLIINPCA 532 (581)
Q Consensus 514 ~~-~~~~l~~L~~L~l~~c~ 532 (581)
+. .+..+++|+.|++++|+
T Consensus 282 ~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 282 PHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CTTSSTTCTTCCEEECCSSC
T ss_pred ChHHhccccCCCEEEccCCC
Confidence 32 23344444444444443
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.87 E-value=9.1e-22 Score=195.86 Aligned_cols=240 Identities=20% Similarity=0.229 Sum_probs=160.8
Q ss_pred eEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChh-hhcccCCcEEEecCCccccc---chhhhcCCCCcEeecCC
Q 035853 281 RLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSS-LCNLLSLHTLDMRWSYIHHT---PDEIWKMNELRHLNFGS 356 (581)
Q Consensus 281 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~l~~l---p~~i~~l~~L~~L~l~~ 356 (581)
+.++.+++.++.+|..+. ++|++|++++|.++.+|.. ++++++|++|++++|.+..+ |..+..+++|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 456667777777776554 4777777777777777654 56777777777777766544 55566677777777777
Q ss_pred cccCCCCCCccCCCCCCcEeceecCC-Ccch--hhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCccc
Q 035853 357 ITLPAHPGKCCSSLENLNFISVLHPS-SCTQ--DILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIA 433 (581)
Q Consensus 357 ~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~--~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~ 433 (581)
|.+. .+|..+..+++|++|++.++. ...+ ..+..+++|+.|+++++. .....+..+..+++|+.|+++++.
T Consensus 88 n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~--- 161 (306)
T 2z66_A 88 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH--TRVAFNGIFNGLSSLEVLKMAGNS--- 161 (306)
T ss_dssp CSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC--CEECSTTTTTTCTTCCEEECTTCE---
T ss_pred Cccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc--CCccchhhcccCcCCCEEECCCCc---
Confidence 7665 456567777777777777766 3222 356677777777777775 445555666777777777777644
Q ss_pred CCcccc-c--CC-CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCc
Q 035853 434 LQPSSI-V--LP-EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFW 509 (581)
Q Consensus 434 L~~l~l-~--lp-~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 509 (581)
+ . +| .+..+++|++|++++|.+++..+..++.+++|++|++++|.+.+.. +..+..+++|+.|++++|..
T Consensus 162 -----l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 162 -----FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD-TFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp -----EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCC-SGGGTTCTTCCEEECTTSCC
T ss_pred -----cccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccC-hhhccCcccCCEeECCCCCC
Confidence 4 2 56 6777777777777777766655666777777777777777665433 23356677777777777754
Q ss_pred ccccccCccccc-ccceEeeccCcCC
Q 035853 510 LEEWTMENDAMP-KLESLIINPCAYL 534 (581)
Q Consensus 510 l~~l~~~~~~l~-~L~~L~l~~c~~l 534 (581)
....+..+..+| +|+.|++++|+..
T Consensus 236 ~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 236 MTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred cccCHHHHHhhhccCCEEEccCCCee
Confidence 444455566664 7777777777643
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.5e-22 Score=195.92 Aligned_cols=215 Identities=18% Similarity=0.166 Sum_probs=115.2
Q ss_pred eEEEecCcccccCCCcccCcCCCcEEeccCCCCcccC-hhhhcccCCcEEEecCCccccc-chhhhcCCCCcEeecCCcc
Q 035853 281 RLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLP-SSLCNLLSLHTLDMRWSYIHHT-PDEIWKMNELRHLNFGSIT 358 (581)
Q Consensus 281 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~ 358 (581)
++++.++..++.+|..+ .++|++|++++|.++.+| ..++++++|++|++++|.+..+ |..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 44555555555555433 235555555555555444 3355555555555555555444 3445555555555555554
Q ss_pred -cCCCCCCccCCCCCCcEeceecCC--CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCC
Q 035853 359 -LPAHPGKCCSSLENLNFISVLHPS--SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQ 435 (581)
Q Consensus 359 -~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~ 435 (581)
+....|..+..+++|++|++.++. ...+..+..+++|+.|+++++. .....+..+..+++|+.|+++++.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~----- 164 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA--LQALPDDTFRDLGNLTHLFLHGNR----- 164 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSC-----
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc--ccccCHhHhccCCCccEEECCCCc-----
Confidence 333334455555555555555554 2223345555556666655553 222223335555556666655543
Q ss_pred cccc-cCC--CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCC
Q 035853 436 PSSI-VLP--EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMF 508 (581)
Q Consensus 436 ~l~l-~lp--~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 508 (581)
+ .+| ++..+++|++|++++|.+.+..+..++.+++|+.|++++|.+.+.. +..+..+++|+.|++++|+
T Consensus 165 ---l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 165 ---ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP-TEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp ---CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC-HHHHTTCTTCCEEECCSSC
T ss_pred ---ccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC-HHHcccCcccCEEeccCCC
Confidence 4 444 3556666666666666655555556666666666666666554422 2234556666666666654
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.86 E-value=9.2e-21 Score=204.93 Aligned_cols=214 Identities=22% Similarity=0.133 Sum_probs=102.3
Q ss_pred CCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCC
Q 035853 277 FKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGS 356 (581)
Q Consensus 277 ~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~ 356 (581)
+++|++|++++|.++.+|. .+++|++|++++|.++.+|. .+.+|++|++++|.+..+|.. +++|++|++++
T Consensus 80 l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~ 150 (622)
T 3g06_A 80 PPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSD 150 (622)
T ss_dssp CTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCS
T ss_pred CCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcC
Confidence 4455555555555555444 34455555555555555544 344555555555555555542 24555555555
Q ss_pred cccCCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCC
Q 035853 357 ITLPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQ 435 (581)
Q Consensus 357 ~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~ 435 (581)
|.+. .+|. .+.+|+.|++.++. ..++ ..+++|+.|++++| .
T Consensus 151 N~l~-~l~~---~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N--------------------------~----- 192 (622)
T 3g06_A 151 NQLA-SLPA---LPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDN--------------------------Q----- 192 (622)
T ss_dssp SCCS-CCCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSS--------------------------C-----
T ss_pred CcCC-CcCC---ccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCC--------------------------C-----
Confidence 5443 2332 12344444444444 2222 23344444444444 3
Q ss_pred cccc-cCCCCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccc
Q 035853 436 PSSI-VLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWT 514 (581)
Q Consensus 436 ~l~l-~lp~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 514 (581)
+ .+|. .+++|+.|++++|.++. .+ ..+++|+.|++++|.+.+. + ..+++|+.|++++| .++.+|
T Consensus 193 ---l~~l~~--~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~L~~l--p---~~l~~L~~L~Ls~N-~L~~lp 257 (622)
T 3g06_A 193 ---LASLPT--LPSELYKLWAYNNRLTS-LP---ALPSGLKELIVSGNRLTSL--P---VLPSELKELMVSGN-RLTSLP 257 (622)
T ss_dssp ---CSCCCC--CCTTCCEEECCSSCCSS-CC---CCCTTCCEEECCSSCCSCC--C---CCCTTCCEEECCSS-CCSCCC
T ss_pred ---CCCCCC--ccchhhEEECcCCcccc-cC---CCCCCCCEEEccCCccCcC--C---CCCCcCcEEECCCC-CCCcCC
Confidence 3 3330 12445555555554432 11 1234555555555544331 1 33455555555555 344444
Q ss_pred cCcccccccceEeeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 515 MENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 515 ~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
. .+++|+.|++++|. +..+|..+.++++|+.|++++|+
T Consensus 258 ~---~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 258 M---LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp C---CCTTCCEEECCSSC-CCSCCGGGGGSCTTCEEECCSCC
T ss_pred c---ccccCcEEeCCCCC-CCcCCHHHhhccccCEEEecCCC
Confidence 4 44555555555553 33555555555555555555554
|
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.3e-22 Score=217.61 Aligned_cols=180 Identities=17% Similarity=0.212 Sum_probs=142.7
Q ss_pred HHHHHHHHHhcC--ceEEEEEEcCCChhHHHHHHhhCCCCCCCCEEEEeCCC-----------h----------HHHHHh
Q 035853 3 QRKTALHDYLRN--KRYLIVFEDVISSDVWDYIGKALPDHQNGSRVLAMLTC-----------S----------DEIFSL 59 (581)
Q Consensus 3 ~l~~~l~~~L~~--kr~LlVLDDv~~~~~~~~l~~~~~~~~~gs~iivTtr~-----------~----------~~~~~L 59 (581)
.+...+++.+.+ +|+||||||||+..+++. .++||+||||||+ | +||++|
T Consensus 222 ~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~-------l~~~~~ilvTsR~~~~~~~~~~~~~~v~~l~~L~~~ea~~L 294 (591)
T 1z6t_A 222 EAKDRLRILMLRKHPRSLLILDDVWDSWVLKA-------FDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEI 294 (591)
T ss_dssp HHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT-------TCSSCEEEEEESCGGGGTTCCSCEEEEECCSSCCHHHHHHH
T ss_pred HHHHHHHHHHccCCCCeEEEEeCCCCHHHHHH-------hcCCCeEEEECCCcHHHHhcCCCceEeecCCCCCHHHHHHH
Confidence 456777777776 799999999999876643 2679999999997 1 899999
Q ss_pred c-ccccCccccCCC-CChh-hHHhhcCCcchhhhhhccc--c---ceecccccccc----------------c--cccee
Q 035853 60 C-RLENGEMIHLDS-VPAG-PLRAKYQERPLVFLYYGRN--S---LVENMRLTWRI----------------Q--KWPLL 113 (581)
Q Consensus 60 f-~~f~~~~~~~~~-~~~~-~i~~~c~GlPLal~~~g~~--t---~~~~~~~~~~~----------------~--~~~L~ 113 (581)
| +..+. ..+. .+.+ +|+++|+|+||||+.+|+. . -|+.. ...+ . ..++.
T Consensus 295 ~~~~~~~---~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~~w~~~--l~~l~~~~~~~~~~~~~~~~~~l~~~l~ 369 (591)
T 1z6t_A 295 LSLFVNM---KKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYY--LKQLQNKQFKRIRKSSSYDYEALDEAMS 369 (591)
T ss_dssp HHHHHTS---CGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHSTTCHHHH--HHHHHSCCCCCSSCCCSSCCHHHHHHHH
T ss_pred HHHHhCC---CcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCchhHHHH--HHHHHHhHHHHhhhccccchHHHHHHHH
Confidence 9 66322 1222 6778 9999999999999999998 1 12211 1100 0 56789
Q ss_pred ccccCchhhhHHHHhhhcccCCCceechHHHHHHHHhcCCCCCChHHHHHHHHHHHHhCCceeeeeccCCCCEeEEEeCh
Q 035853 114 FSIVELPQHLKLCCLYLSAFRDAFEIATKELYQLWIAEGFIPDNSEKTAEEYLEQLISRGFIKVKKRRAGGTIKTCYISF 193 (581)
Q Consensus 114 ~sY~~L~~~lk~cFl~~a~Fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~~L~~~~ll~~~~~~~~g~~~~~~mHd 193 (581)
.||+.||++.|.||++||+||+|+.|+.+.++.+|.++ .+.++.++++|+++||++.... |....|+||+
T Consensus 370 ~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-------~~~~~~~l~~L~~~~Ll~~~~~---~~~~~~~~H~ 439 (591)
T 1z6t_A 370 ISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-------TEEVEDILQEFVNKSLLFCDRN---GKSFRYYLHD 439 (591)
T ss_dssp HHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSSEEEEE---TTEEEEECCH
T ss_pred HHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-------HHHHHHHHHHHHhCcCeEEecC---CCccEEEEcH
Confidence 99999999999999999999999999999999999753 3457899999999999996552 3446899999
Q ss_pred HHHHHHHHhcc
Q 035853 194 ITRGMLVLVAE 204 (581)
Q Consensus 194 li~dl~~~i~~ 204 (581)
++|++++....
T Consensus 440 lv~~~~~~~~~ 450 (591)
T 1z6t_A 440 LQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHHHTG
T ss_pred HHHHHHHhhhh
Confidence 99999998843
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=5.1e-21 Score=210.06 Aligned_cols=309 Identities=18% Similarity=0.150 Sum_probs=220.5
Q ss_pred CCcccccCCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCC-cccCcCCCcEEeccCCCCcc
Q 035853 237 FDSWEHFDTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPA-GINPLLLLKYLVLNIPSLKH 315 (581)
Q Consensus 237 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~-~i~~l~~Lr~L~L~~~~i~~ 315 (581)
..+|..+.++++.|.+.++.... .+ ...|.++++|++|+|++|.++.+|. .|.++++|++|+|++|+++.
T Consensus 44 ~~vP~~lp~~~~~LdLs~N~i~~------l~---~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~ 114 (635)
T 4g8a_A 44 YKIPDNLPFSTKNLDLSFNPLRH------LG---SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 114 (635)
T ss_dssp SSCCSSSCTTCCEEECTTSCCCE------EC---TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred CccCCCCCcCCCEEEeeCCCCCC------CC---HHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC
Confidence 34666667799999999998754 33 5689999999999999999997764 68999999999999999999
Q ss_pred cCh-hhhcccCCcEEEecCCcccccchh-hhcCCCCcEeecCCcccCC-CCCCccCCCCCCcEeceecCC-Ccc-hhhhC
Q 035853 316 LPS-SLCNLLSLHTLDMRWSYIHHTPDE-IWKMNELRHLNFGSITLPA-HPGKCCSSLENLNFISVLHPS-SCT-QDILG 390 (581)
Q Consensus 316 lp~-~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~l~~~~-~~~-~~~l~ 390 (581)
+|. .++++++|++|++++|.+..+|.. ++++++|++|++++|.+.. ..|..++.+++|++|++.++. ..+ +..+.
T Consensus 115 l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~ 194 (635)
T 4g8a_A 115 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 194 (635)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred CCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccccc
Confidence 885 579999999999999999999864 7899999999999999864 567788999999999998875 111 11110
Q ss_pred ---C------------------------CCCCCeEEEeeeccc-------------------------------------
Q 035853 391 ---R------------------------LPSLQTFRVHENLSS------------------------------------- 406 (581)
Q Consensus 391 ---~------------------------l~~L~~L~l~~~~~~------------------------------------- 406 (581)
. ...++.+.+.++...
T Consensus 195 ~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~ 274 (635)
T 4g8a_A 195 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 274 (635)
T ss_dssp HHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTT
T ss_pred chhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccc
Confidence 0 000111111111000
Q ss_pred -----------------------------------------------------------------chhc-----------
Q 035853 407 -----------------------------------------------------------------YQSM----------- 410 (581)
Q Consensus 407 -----------------------------------------------------------------~~~~----------- 410 (581)
....
T Consensus 275 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l 354 (635)
T 4g8a_A 275 LEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRL 354 (635)
T ss_dssp TGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEE
T ss_pred cccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhc
Confidence 0000
Q ss_pred --------hhhhcCCCCCCCEEEeecCCc-----c--------cCCccc----------------------------c--
Q 035853 411 --------LSNNLCPLLHLESLKLVDERT-----I--------ALQPSS----------------------------I-- 439 (581)
Q Consensus 411 --------l~~~l~~~~~L~~L~l~~~~~-----i--------~L~~l~----------------------------l-- 439 (581)
.+.....+++|+.|+++.+.- . .++.+. .
T Consensus 355 ~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 434 (635)
T 4g8a_A 355 TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ 434 (635)
T ss_dssp EEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEES
T ss_pred ccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccc
Confidence 000011234555555544210 0 111110 1
Q ss_pred cCC--CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCccccc-ccC
Q 035853 440 VLP--EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEW-TME 516 (581)
Q Consensus 440 ~lp--~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~ 516 (581)
..+ .+..+++++.++++.|.+....+..+..+++|+.|++++|.......+..+..+++|+.|++++| .++.+ |..
T Consensus 435 ~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~ 513 (635)
T 4g8a_A 435 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTA 513 (635)
T ss_dssp TTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTT
T ss_pred cccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcChHH
Confidence 111 34556677777777776666666677888999999999888766666777889999999999998 56665 567
Q ss_pred cccccccceEeeccCcCCCCC-cccccCCCCccEEEeeCCC
Q 035853 517 NDAMPKLESLIINPCAYLKIL-PEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 517 ~~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~ 556 (581)
++.+++|+.|++++|. +..+ |..+..+++|+.|++++|.
T Consensus 514 f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~ 553 (635)
T 4g8a_A 514 FNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNH 553 (635)
T ss_dssp TTTCTTCCEEECTTSC-CCBCCCGGGTTCTTCCEEECTTSC
T ss_pred HcCCCCCCEEECCCCc-CCCCChhHHhCCCCCCEEECCCCc
Confidence 8999999999999996 4555 5578899999999999986
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.2e-22 Score=200.81 Aligned_cols=241 Identities=17% Similarity=0.153 Sum_probs=151.1
Q ss_pred cCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCccc--ccchhhh-------cCCCCcEeecCCcccCCCCCCcc-
Q 035853 298 NPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIH--HTPDEIW-------KMNELRHLNFGSITLPAHPGKCC- 367 (581)
Q Consensus 298 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~--~lp~~i~-------~l~~L~~L~l~~~~~~~~~p~~i- 367 (581)
+...+|++|++++|.+ .+|..+... |+.|+++++.+. .+|..+. .+++|++|++++|.+.+.+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred ccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 3344555555555555 555544433 555555555442 2444333 45556666666655555555544
Q ss_pred -CCCCCCcEeceecCC-CcchhhhCCC-----CCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-
Q 035853 368 -SSLENLNFISVLHPS-SCTQDILGRL-----PSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI- 439 (581)
Q Consensus 368 -~~l~~L~~L~l~~~~-~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l- 439 (581)
+.+++|++|+++++. ...+..++.+ ++|+.|+++++. .....+..+..+++|+.|+++++. +
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~Ls~N~--------l~ 186 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH--SLNFSCEQVRVFPALSTLDLSDNP--------EL 186 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS--CCCCCTTTCCCCSSCCEEECCSCT--------TC
T ss_pred HhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC--CccchHHHhccCCCCCEEECCCCC--------cC
Confidence 555566666655555 2223333333 666666666664 444444566666666666666643 2
Q ss_pred ---cCC-C--CCCCCCccEEEEeeccCCC--CCc-ccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcc
Q 035853 440 ---VLP-E--YQFPPRLIELSLSNTELKY--DPM-PALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWL 510 (581)
Q Consensus 440 ---~lp-~--~~~l~~L~~L~L~~~~l~~--~~~-~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 510 (581)
.+| . +..+++|++|++++|.++. ..+ ..+..+++|++|++++|.+.+.........+++|+.|++++| .+
T Consensus 187 ~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l 265 (312)
T 1wwl_A 187 GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-GL 265 (312)
T ss_dssp HHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS-CC
T ss_pred cchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC-cc
Confidence 123 2 3677888888888887653 111 234577899999999888776552234556789999999988 56
Q ss_pred cccccCcccccccceEeeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 511 EEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 511 ~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
+.+|..+. ++|+.|++++|. +..+|. +..+++|++|++++|+
T Consensus 266 ~~ip~~~~--~~L~~L~Ls~N~-l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 266 KQVPKGLP--AKLSVLDLSYNR-LDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp SSCCSSCC--SEEEEEECCSSC-CCSCCC-TTTSCEEEEEECTTCT
T ss_pred Chhhhhcc--CCceEEECCCCC-CCCChh-HhhCCCCCEEeccCCC
Confidence 78877665 889999999886 566676 8889999999999887
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.85 E-value=9.8e-21 Score=204.73 Aligned_cols=235 Identities=18% Similarity=0.040 Sum_probs=163.1
Q ss_pred CCCCeeEEEEEecccCCCcccccCCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccCc
Q 035853 221 SLEDFKRISVCRTVTNFDSWEHFDTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPL 300 (581)
Q Consensus 221 ~~~~~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l 300 (581)
.+.+++.+.+. ++....++. .+++|++|.+.++.... . +. .+++|++|++++|.++.+|. .+
T Consensus 59 l~~~L~~L~L~-~N~l~~lp~-~l~~L~~L~Ls~N~l~~------l----p~---~l~~L~~L~Ls~N~l~~l~~---~l 120 (622)
T 3g06_A 59 LPAHITTLVIP-DNNLTSLPA-LPPELRTLEVSGNQLTS------L----PV---LPPGLLELSIFSNPLTHLPA---LP 120 (622)
T ss_dssp CCTTCSEEEEC-SCCCSCCCC-CCTTCCEEEECSCCCSC------C----CC---CCTTCCEEEECSCCCCCCCC---CC
T ss_pred hCCCCcEEEec-CCCCCCCCC-cCCCCCEEEcCCCcCCc------C----CC---CCCCCCEEECcCCcCCCCCC---CC
Confidence 45789999999 655544444 48899999999988643 1 22 78999999999999998887 56
Q ss_pred CCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceec
Q 035853 301 LLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLH 380 (581)
Q Consensus 301 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~ 380 (581)
.+|++|++++|.++.+|.. +++|++|++++|.+..+|. .+.+|+.|++++|.+. .+| ..+++|+.|++.+
T Consensus 121 ~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~-~l~---~~~~~L~~L~Ls~ 190 (622)
T 3g06_A 121 SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLT-SLP---MLPSGLQELSVSD 190 (622)
T ss_dssp TTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS-CCC---CCCTTCCEEECCS
T ss_pred CCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCC-CCc---ccCCCCcEEECCC
Confidence 8999999999999999975 5899999999999998886 3578999999999987 466 5578999999999
Q ss_pred CC-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCCCCCCCCCccEEEEeec
Q 035853 381 PS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLPEYQFPPRLIELSLSNT 458 (581)
Q Consensus 381 ~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp~~~~l~~L~~L~L~~~ 458 (581)
+. ..++. .+++|+.|++++|. ...+|. .+++|+.|+++++. + .+| ..+++|++|++++|
T Consensus 191 N~l~~l~~---~~~~L~~L~L~~N~---l~~l~~---~~~~L~~L~Ls~N~--------L~~lp--~~l~~L~~L~Ls~N 251 (622)
T 3g06_A 191 NQLASLPT---LPSELYKLWAYNNR---LTSLPA---LPSGLKELIVSGNR--------LTSLP--VLPSELKELMVSGN 251 (622)
T ss_dssp SCCSCCCC---CCTTCCEEECCSSC---CSSCCC---CCTTCCEEECCSSC--------CSCCC--CCCTTCCEEECCSS
T ss_pred CCCCCCCC---ccchhhEEECcCCc---ccccCC---CCCCCCEEEccCCc--------cCcCC--CCCCcCcEEECCCC
Confidence 87 54443 24788888888874 223332 23556666666543 3 444 22345555555555
Q ss_pred cCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCC
Q 035853 459 ELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMF 508 (581)
Q Consensus 459 ~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 508 (581)
.++. .+. .+++|+.|++++|.+. .++..+..+++|+.|++++|+
T Consensus 252 ~L~~-lp~---~~~~L~~L~Ls~N~L~--~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 252 RLTS-LPM---LPSGLLSLSVYRNQLT--RLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CCSC-CCC---CCTTCCEEECCSSCCC--SCCGGGGGSCTTCEEECCSCC
T ss_pred CCCc-CCc---ccccCcEEeCCCCCCC--cCCHHHhhccccCEEEecCCC
Confidence 5432 111 3455555555555444 123334455555555555554
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-20 Score=197.32 Aligned_cols=239 Identities=19% Similarity=0.220 Sum_probs=200.0
Q ss_pred CCcEEeccCCCCcccChhhhcccCCcEEEecCCccccc-chhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceec
Q 035853 302 LLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHT-PDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLH 380 (581)
Q Consensus 302 ~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~ 380 (581)
..+.++.++..++.+|..+. ++|++|++++|.+..+ |..+.++++|++|++++|.+.+..|..+.++++|++|++.+
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 46788888989999998764 7999999999998877 46689999999999999999877778899999999999999
Q ss_pred CC-Ccchh-hhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC--CCCCCCCccEEEE
Q 035853 381 PS-SCTQD-ILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP--EYQFPPRLIELSL 455 (581)
Q Consensus 381 ~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp--~~~~l~~L~~L~L 455 (581)
+. ..++. .+..+++|+.|+++++. .....+..+..+++|+.|+++++.. + .+| .+..+++|++|++
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~l~~~~~-------l~~i~~~~~~~l~~L~~L~L 203 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNP--IESIPSYAFNRVPSLMRLDLGELKK-------LEYISEGAFEGLFNLKYLNL 203 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCC--CCEECTTTTTTCTTCCEEECCCCTT-------CCEECTTTTTTCTTCCEEEC
T ss_pred CcCCccChhhhcccCCCCEEECCCCC--cceeCHhHHhcCCcccEEeCCCCCC-------ccccChhhccCCCCCCEEEC
Confidence 98 54444 48889999999999996 4444455788999999999997331 4 566 6889999999999
Q ss_pred eeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCccccc-ccCcccccccceEeeccCcCC
Q 035853 456 SNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEW-TMENDAMPKLESLIINPCAYL 534 (581)
Q Consensus 456 ~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l 534 (581)
++|.++. .+.+..+++|+.|++++|.+.+.. +..+..+++|+.|++++|. +..+ +..+..+++|+.|++++|. +
T Consensus 204 ~~n~l~~--~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l 278 (452)
T 3zyi_A 204 GMCNIKD--MPNLTPLVGLEELEMSGNHFPEIR-PGSFHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHNN-L 278 (452)
T ss_dssp TTSCCSS--CCCCTTCTTCCEEECTTSCCSEEC-GGGGTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-C
T ss_pred CCCcccc--cccccccccccEEECcCCcCcccC-cccccCccCCCEEEeCCCc-CceECHHHhcCCCCCCEEECCCCc-C
Confidence 9998764 357889999999999998886543 5668899999999999985 5544 5668899999999999996 4
Q ss_pred CCCc-ccccCCCCccEEEeeCCC
Q 035853 535 KILP-EELWRIKSLTKLELWWPR 556 (581)
Q Consensus 535 ~~lp-~~l~~l~~L~~L~l~~c~ 556 (581)
..+| ..+..+++|+.|++++||
T Consensus 279 ~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 279 SSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp SCCCTTSSTTCTTCCEEECCSSC
T ss_pred CccChHHhccccCCCEEEccCCC
Confidence 5555 457889999999999887
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-22 Score=202.13 Aligned_cols=246 Identities=16% Similarity=0.101 Sum_probs=194.9
Q ss_pred HHHhccCCceeEEEecCcccccCC-CcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCC
Q 035853 271 NAICKWFKFLRLLDLGTIVLDEYP-AGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNEL 349 (581)
Q Consensus 271 ~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L 349 (581)
...+..+++|++|++++|.++.++ ..+..+++|++|++++|.+...++ ++.+++|++|++++|.+..+|. .++|
T Consensus 27 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L 101 (317)
T 3o53_A 27 ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSI 101 (317)
T ss_dssp HHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTTC
T ss_pred HHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC----CCCc
Confidence 567778889999999999998655 678999999999999999986664 8899999999999998887774 4899
Q ss_pred cEeecCCcccCCCCCCccCCCCCCcEeceecCC-Ccc-hhhhCCCCCCCeEEEeeecccchhchhhhc-CCCCCCCEEEe
Q 035853 350 RHLNFGSITLPAHPGKCCSSLENLNFISVLHPS-SCT-QDILGRLPSLQTFRVHENLSSYQSMLSNNL-CPLLHLESLKL 426 (581)
Q Consensus 350 ~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l-~~~~~L~~L~l 426 (581)
++|++++|.+.+..+ ..+++|++|++.++. ... +..++.+++|+.|+++++. .....+..+ ..+++|+.|++
T Consensus 102 ~~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~~l~~L~~L~L 176 (317)
T 3o53_A 102 ETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE--IDTVNFAELAASSDTLEHLNL 176 (317)
T ss_dssp CEEECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC--CCEEEGGGGGGGTTTCCEEEC
T ss_pred CEEECCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC--CCcccHHHHhhccCcCCEEEC
Confidence 999999998874333 246789999999888 333 4467788999999999986 444444544 46789999999
Q ss_pred ecCCcccCCcccc-cCCCCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEec
Q 035853 427 VDERTIALQPSSI-VLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLK 505 (581)
Q Consensus 427 ~~~~~i~L~~l~l-~lp~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~ 505 (581)
+++. + .+|....+++|++|++++|.++. .++.+..+++|+.|++++|.+.. ++..+..+++|+.|+++
T Consensus 177 ~~N~--------l~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~l~~L~~L~l~ 245 (317)
T 3o53_A 177 QYNF--------IYDVKGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLR 245 (317)
T ss_dssp TTSC--------CCEEECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECT
T ss_pred CCCc--------CcccccccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc--hhhHhhcCCCCCEEEcc
Confidence 9866 6 56633458899999999998764 44558889999999999888763 45567788999999999
Q ss_pred CCCcc-cccccCcccccccceEeeccCcCCCCC
Q 035853 506 SMFWL-EEWTMENDAMPKLESLIINPCAYLKIL 537 (581)
Q Consensus 506 ~~~~l-~~l~~~~~~l~~L~~L~l~~c~~l~~l 537 (581)
+|+.. ..++..+..+++|+.|++.+|+.++..
T Consensus 246 ~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 246 GNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp TCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred CCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 98654 366777888999999999987766543
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.85 E-value=4.4e-20 Score=193.55 Aligned_cols=279 Identities=23% Similarity=0.218 Sum_probs=205.6
Q ss_pred eeEEEEEecccCCCcccccCCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccCcCCCc
Q 035853 225 FKRISVCRTVTNFDSWEHFDTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLK 304 (581)
Q Consensus 225 ~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr 304 (581)
.+++.+. +.....++. ..++++.|.+.++.... . + ..+++|++|++++|.++.+|... ++|+
T Consensus 73 l~~L~l~-~~~l~~lp~-~~~~L~~L~l~~n~l~~-------l---p---~~~~~L~~L~l~~n~l~~l~~~~---~~L~ 134 (454)
T 1jl5_A 73 AHELELN-NLGLSSLPE-LPPHLESLVASCNSLTE-------L---P---ELPQSLKSLLVDNNNLKALSDLP---PLLE 134 (454)
T ss_dssp CSEEECT-TSCCSCCCS-CCTTCSEEECCSSCCSS-------C---C---CCCTTCCEEECCSSCCSCCCSCC---TTCC
T ss_pred CCEEEec-CCccccCCC-CcCCCCEEEccCCcCCc-------c---c---cccCCCcEEECCCCccCcccCCC---CCCC
Confidence 4566666 443332322 36799999998887643 1 1 23478999999999988776432 6999
Q ss_pred EEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC-C
Q 035853 305 YLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS-S 383 (581)
Q Consensus 305 ~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~ 383 (581)
+|++++|.++.+| +++++++|++|++++|.+..+|..+ .+|++|++++|.+.+ +| .++++++|+.|++.++. .
T Consensus 135 ~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 135 YLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK 208 (454)
T ss_dssp EEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS
T ss_pred EEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC
Confidence 9999999999999 6999999999999999998888743 599999999999875 66 69999999999999988 4
Q ss_pred cchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCCCCCCCCCccEEEEeeccCCC
Q 035853 384 CTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLPEYQFPPRLIELSLSNTELKY 462 (581)
Q Consensus 384 ~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp~~~~l~~L~~L~L~~~~l~~ 462 (581)
.++.. .++|+.|++++|. . ..+| .+..+++|+.|+++++. + .+|. .+++|++|++++|.+.+
T Consensus 209 ~l~~~---~~~L~~L~l~~n~--l-~~lp-~~~~l~~L~~L~l~~N~--------l~~l~~--~~~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 209 KLPDL---PLSLESIVAGNNI--L-EELP-ELQNLPFLTTIYADNNL--------LKTLPD--LPPSLEALNVRDNYLTD 271 (454)
T ss_dssp SCCCC---CTTCCEEECCSSC--C-SSCC-CCTTCTTCCEEECCSSC--------CSSCCS--CCTTCCEEECCSSCCSC
T ss_pred cCCCC---cCcccEEECcCCc--C-Cccc-ccCCCCCCCEEECCCCc--------CCcccc--cccccCEEECCCCcccc
Confidence 44432 2589999999995 3 3666 48899999999999865 5 5661 13678888888887654
Q ss_pred CCcccccCCCCCCeEEEecCcccCce-eee-------------CCCCC-CCCcEEEecCCCcccccccCcccccccceEe
Q 035853 463 DPMPALEKLPHLRVLKLKKNSFFGRK-LVC-------------SSGGF-PSLKVMHLKSMFWLEEWTMENDAMPKLESLI 527 (581)
Q Consensus 463 ~~~~~l~~l~~L~~L~L~~~~~~~~~-~~~-------------~~~~~-~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~ 527 (581)
.+. .+++|+.|++++|.+.+.. .+. ....+ ++|+.|++++| .+..+|.. +++|+.|+
T Consensus 272 -l~~---~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N-~l~~lp~~---~~~L~~L~ 343 (454)
T 1jl5_A 272 -LPE---LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELPAL---PPRLERLI 343 (454)
T ss_dssp -CCC---CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSS-CCSCCCCC---CTTCCEEE
T ss_pred -cCc---ccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCC-cccccccc---CCcCCEEE
Confidence 222 1356666776666554310 000 01123 47888888886 45566653 68999999
Q ss_pred eccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 528 INPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 528 l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
+++|. +..+|. .+++|++|++++|+
T Consensus 344 L~~N~-l~~lp~---~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 344 ASFNH-LAEVPE---LPQNLKQLHVEYNP 368 (454)
T ss_dssp CCSSC-CSCCCC---CCTTCCEEECCSSC
T ss_pred CCCCc-cccccc---hhhhccEEECCCCC
Confidence 99986 567886 47899999999887
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-20 Score=195.85 Aligned_cols=239 Identities=16% Similarity=0.214 Sum_probs=199.9
Q ss_pred CCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccc-hhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceec
Q 035853 302 LLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTP-DEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLH 380 (581)
Q Consensus 302 ~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~ 380 (581)
..+.++.++..++.+|..+. .+++.|++++|.+..++ ..+.++++|++|++++|.+....+..+.++++|++|++.+
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 46788889999999998775 78999999999998876 5689999999999999999866667899999999999999
Q ss_pred CC-Ccchh-hhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC--CCCCCCCccEEEE
Q 035853 381 PS-SCTQD-ILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP--EYQFPPRLIELSL 455 (581)
Q Consensus 381 ~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp--~~~~l~~L~~L~L 455 (581)
+. ..++. .+..+++|+.|+++++. .....+..+..+++|+.|+++++.. + .+| .+..+++|++|++
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~--i~~~~~~~~~~l~~L~~L~l~~~~~-------l~~i~~~~~~~l~~L~~L~L 192 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNP--IESIPSYAFNRIPSLRRLDLGELKR-------LSYISEGAFEGLSNLRYLNL 192 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCC--CCEECTTTTTTCTTCCEEECCCCTT-------CCEECTTTTTTCSSCCEEEC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCc--ccccCHHHhhhCcccCEeCCCCCCC-------cceeCcchhhcccccCeecC
Confidence 98 55544 68899999999999996 5444456788999999999998331 3 555 6889999999999
Q ss_pred eeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCccccc-ccCcccccccceEeeccCcCC
Q 035853 456 SNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEW-TMENDAMPKLESLIINPCAYL 534 (581)
Q Consensus 456 ~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l 534 (581)
++|.++. .+.+..+++|+.|++++|.+.+.. +..+..+++|+.|++++|. +..+ +..+..+++|+.|++++|..
T Consensus 193 ~~n~l~~--~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l- 267 (440)
T 3zyj_A 193 AMCNLRE--IPNLTPLIKLDELDLSGNHLSAIR-PGSFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHNNL- 267 (440)
T ss_dssp TTSCCSS--CCCCTTCSSCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECTTSCC-
T ss_pred CCCcCcc--ccccCCCcccCEEECCCCccCccC-hhhhccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECCCCCC-
Confidence 9998763 346889999999999999876543 5668889999999999984 5555 55688999999999999974
Q ss_pred CCCc-ccccCCCCccEEEeeCCC
Q 035853 535 KILP-EELWRIKSLTKLELWWPR 556 (581)
Q Consensus 535 ~~lp-~~l~~l~~L~~L~l~~c~ 556 (581)
..+| ..+..+++|+.|++++||
T Consensus 268 ~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 268 TLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CCCCTTTTSSCTTCCEEECCSSC
T ss_pred CccChhHhccccCCCEEEcCCCC
Confidence 4555 457889999999999887
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.84 E-value=2.7e-23 Score=219.31 Aligned_cols=294 Identities=18% Similarity=0.135 Sum_probs=149.4
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCC----ceeEEEecCcccc-----cCCCcccCcCCCcEEeccCCCCc
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFK----FLRLLDLGTIVLD-----EYPAGINPLLLLKYLVLNIPSLK 314 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~Lr~L~L~~~~l~-----~lp~~i~~l~~Lr~L~L~~~~i~ 314 (581)
+++|++|.+.++.... ..+ ...+..++ +|++|++++|.++ .+|..+..+++|++|++++|.+.
T Consensus 55 ~~~L~~L~Ls~n~l~~-----~~~---~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 126 (461)
T 1z7x_W 55 NPALAELNLRSNELGD-----VGV---HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 126 (461)
T ss_dssp CTTCCEEECTTCCCHH-----HHH---HHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred CCCcCEEeCCCCcCCh-----HHH---HHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCc
Confidence 4666666666554421 111 22233333 4666666666655 23555566666666666666654
Q ss_pred c-cChhhh-----cccCCcEEEecCCcccc-----cchhhhcCCCCcEeecCCcccCCCCCCccC-----CCCCCcEece
Q 035853 315 H-LPSSLC-----NLLSLHTLDMRWSYIHH-----TPDEIWKMNELRHLNFGSITLPAHPGKCCS-----SLENLNFISV 378 (581)
Q Consensus 315 ~-lp~~i~-----~L~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~-----~l~~L~~L~l 378 (581)
. -+..+. ...+|++|++++|.+.. ++..+..+++|++|++++|.+....+..+. ..++|++|++
T Consensus 127 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L 206 (461)
T 1z7x_W 127 DAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKL 206 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEEC
T ss_pred hHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEc
Confidence 1 122222 13456666666665432 344455566666666666655332222221 2446666666
Q ss_pred ecCC-C-----cchhhhCCCCCCCeEEEeeecccchhc----h-hhhcCCCCCCCEEEeecCCcccCCcccc-c-----C
Q 035853 379 LHPS-S-----CTQDILGRLPSLQTFRVHENLSSYQSM----L-SNNLCPLLHLESLKLVDERTIALQPSSI-V-----L 441 (581)
Q Consensus 379 ~~~~-~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~----l-~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~-----l 441 (581)
.+|. . .++..+..+++|+.|++++|. .... + +.....+++|+.|+++++. + . +
T Consensus 207 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~--l~~~~~~~l~~~~~~~~~~L~~L~L~~n~--------l~~~~~~~l 276 (461)
T 1z7x_W 207 ESCGVTSDNCRDLCGIVASKASLRELALGSNK--LGDVGMAELCPGLLHPSSRLRTLWIWECG--------ITAKGCGDL 276 (461)
T ss_dssp TTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB--CHHHHHHHHHHHHTSTTCCCCEEECTTSC--------CCHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHhCCCccEEeccCCc--CChHHHHHHHHHHhcCCCCceEEECcCCC--------CCHHHHHHH
Confidence 6665 1 134455556666666666664 2111 1 1222345666666666543 2 1 3
Q ss_pred C-CCCCCCCccEEEEeeccCCCCCcccccC-----CCCCCeEEEecCcccCce---eeeCCCCCCCCcEEEecCCCcccc
Q 035853 442 P-EYQFPPRLIELSLSNTELKYDPMPALEK-----LPHLRVLKLKKNSFFGRK---LVCSSGGFPSLKVMHLKSMFWLEE 512 (581)
Q Consensus 442 p-~~~~l~~L~~L~L~~~~l~~~~~~~l~~-----l~~L~~L~L~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~l~~ 512 (581)
| .+..+++|++|++++|.+....+..+.. .++|++|++++|.+.+.. ++..+..+++|++|++++| .+..
T Consensus 277 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~ 355 (461)
T 1z7x_W 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN-RLED 355 (461)
T ss_dssp HHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHH
T ss_pred HHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC-cccc
Confidence 4 4444566666666666543322222221 246666666666554332 1222334566666666666 3332
Q ss_pred c-ccCcc-----cccccceEeeccCcCCC----CCcccccCCCCccEEEeeCCC
Q 035853 513 W-TMEND-----AMPKLESLIINPCAYLK----ILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 513 l-~~~~~-----~l~~L~~L~l~~c~~l~----~lp~~l~~l~~L~~L~l~~c~ 556 (581)
. +..+. ..++|++|++++|.... .+|..+..+++|++|++++|+
T Consensus 356 ~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 356 AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred ccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 2 11111 15567777777765332 456666666777777777765
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=8.3e-21 Score=186.88 Aligned_cols=200 Identities=21% Similarity=0.251 Sum_probs=155.2
Q ss_pred CCceeEEEecCcccccCC-CcccCcCCCcEEeccCCCCccc-ChhhhcccCCcEEEecCCc-cccc-chhhhcCCCCcEe
Q 035853 277 FKFLRLLDLGTIVLDEYP-AGINPLLLLKYLVLNIPSLKHL-PSSLCNLLSLHTLDMRWSY-IHHT-PDEIWKMNELRHL 352 (581)
Q Consensus 277 ~~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~-l~~l-p~~i~~l~~L~~L 352 (581)
.++|++|+++++.++.++ ..+..+++|++|++++|.++.+ |..++++++|++|++++|. +..+ |..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 457888888888887555 4577888888888888888755 5677888888888888884 7777 5567778888888
Q ss_pred ecCCcccCCCCCCccCCCCCCcEeceecCC-Ccch-hhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCC
Q 035853 353 NFGSITLPAHPGKCCSSLENLNFISVLHPS-SCTQ-DILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDER 430 (581)
Q Consensus 353 ~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~ 430 (581)
++++|.+.+..|..+.++++|++|++.++. ...+ ..++.+++|+.|+++++. .....+..+..+++|+.|+++++.
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~ 188 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR--ISSVPERAFRGLHSLDRLLLHQNR 188 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc--ccccCHHHhcCccccCEEECCCCc
Confidence 888888776666777888888888888877 4333 347788888888888885 433334457788889999988865
Q ss_pred cccCCcccc-cC-C-CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccC
Q 035853 431 TIALQPSSI-VL-P-EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFG 486 (581)
Q Consensus 431 ~i~L~~l~l-~l-p-~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~ 486 (581)
+ .+ | ++..+++|++|++++|.+++..+..++.+++|+.|++++|.+..
T Consensus 189 --------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 189 --------VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp --------CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred --------ccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 6 44 6 78899999999999999887666779999999999999887643
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.4e-22 Score=198.68 Aligned_cols=239 Identities=18% Similarity=0.207 Sum_probs=141.1
Q ss_pred cCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCc--ccChhhh-------cccCCcEEEecCCccc-ccchhh--
Q 035853 276 WFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLK--HLPSSLC-------NLLSLHTLDMRWSYIH-HTPDEI-- 343 (581)
Q Consensus 276 ~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~--~lp~~i~-------~L~~L~~L~l~~~~l~-~lp~~i-- 343 (581)
..++|+.|+++++.+ .+|..+... |++|++++|.+. .+|..+. ++++|++|++++|.+. .+|..+
T Consensus 41 ~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred cCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 344455555555555 444444432 555555555553 3444443 4555555555555443 345443
Q ss_pred hcCCCCcEeecCCcccCCCCCCccCCC-----CCCcEeceecCC-C-cchhhhCCCCCCCeEEEeeecccchhc--hhhh
Q 035853 344 WKMNELRHLNFGSITLPAHPGKCCSSL-----ENLNFISVLHPS-S-CTQDILGRLPSLQTFRVHENLSSYQSM--LSNN 414 (581)
Q Consensus 344 ~~l~~L~~L~l~~~~~~~~~p~~i~~l-----~~L~~L~l~~~~-~-~~~~~l~~l~~L~~L~l~~~~~~~~~~--l~~~ 414 (581)
..+++|++|++++|.+.+. |..++.+ ++|++|++.++. . ..+..++.+++|+.|+++++. .... .+..
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~ 194 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP--ELGERGLISA 194 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCT--TCHHHHHHHH
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCC--cCcchHHHHH
Confidence 4555555555555555433 4444443 555555555555 2 222445555666666666554 2221 2333
Q ss_pred c--CCCCCCCEEEeecCCcccCCcccc-c---CC--CCCCCCCccEEEEeeccCCCCC-cccccCCCCCCeEEEecCccc
Q 035853 415 L--CPLLHLESLKLVDERTIALQPSSI-V---LP--EYQFPPRLIELSLSNTELKYDP-MPALEKLPHLRVLKLKKNSFF 485 (581)
Q Consensus 415 l--~~~~~L~~L~l~~~~~i~L~~l~l-~---lp--~~~~l~~L~~L~L~~~~l~~~~-~~~l~~l~~L~~L~L~~~~~~ 485 (581)
+ ..+++|+.|+++++. + . +| .+..+++|++|++++|.+.+.. .+.+..+++|++|++++|.+.
T Consensus 195 ~~~~~l~~L~~L~L~~N~--------l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAG--------METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp SCTTSCTTCCEEECTTSC--------CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred HHhccCCCCCEEECCCCc--------CcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC
Confidence 3 556666666666543 2 2 22 1345678888888888877655 355667899999999988876
Q ss_pred CceeeeCCCCCCCCcEEEecCCCcccccccCcccccccceEeeccCcCC
Q 035853 486 GRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYL 534 (581)
Q Consensus 486 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l 534 (581)
.++.... ++|+.|++++| .++.+|. +..+++|+.|++++|+..
T Consensus 267 --~ip~~~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 267 --QVPKGLP--AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp --SCCSSCC--SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCTTT
T ss_pred --hhhhhcc--CCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCCCC
Confidence 2233332 89999999998 5777776 889999999999998743
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.8e-21 Score=190.04 Aligned_cols=255 Identities=13% Similarity=0.032 Sum_probs=151.6
Q ss_pred CceeEEEecCcccccCC-CcccCcCCCcEEeccCCCCcccC-hhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecC
Q 035853 278 KFLRLLDLGTIVLDEYP-AGINPLLLLKYLVLNIPSLKHLP-SSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFG 355 (581)
Q Consensus 278 ~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 355 (581)
..++.++++.+.+...+ ..+..+++|++|++++|.++.++ ..++++++|++|++++|.+..++. +..+++|++|+++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls 88 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN 88 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECc
Confidence 34677777777766333 33456779999999999999766 678999999999999998877765 8889999999999
Q ss_pred CcccCCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccC
Q 035853 356 SITLPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIAL 434 (581)
Q Consensus 356 ~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L 434 (581)
+|.+.+ ++ ..++|++|++.++. ...+. ..+++|+.|+++++. .....+..+..+++|+.|+++++.
T Consensus 89 ~n~l~~-l~----~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~--l~~~~~~~~~~l~~L~~L~Ls~N~---- 155 (317)
T 3o53_A 89 NNYVQE-LL----VGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNK--ITMLRDLDEGCRSRVQYLDLKLNE---- 155 (317)
T ss_dssp SSEEEE-EE----ECTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSC--CCSGGGBCTGGGSSEEEEECTTSC----
T ss_pred CCcccc-cc----CCCCcCEEECCCCccCCcCc--cccCCCCEEECCCCC--CCCccchhhhccCCCCEEECCCCC----
Confidence 998762 22 34788888887776 33332 235667777777775 333333444555555555555533
Q ss_pred Ccccc-cC-C-CC-CCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcc
Q 035853 435 QPSSI-VL-P-EY-QFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWL 510 (581)
Q Consensus 435 ~~l~l-~l-p-~~-~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 510 (581)
+ .+ | .+ ..+++|++|++++|.++.. +....+++|++|++++|.+.+. +..+..+++|+.|++++| .+
T Consensus 156 ----l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~l--~~~~~~l~~L~~L~L~~N-~l 226 (317)
T 3o53_A 156 ----IDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFM--GPEFQSAAGVTWISLRNN-KL 226 (317)
T ss_dssp ----CCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEE--CGGGGGGTTCSEEECTTS-CC
T ss_pred ----CCcccHHHHhhccCcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCcc--hhhhcccCcccEEECcCC-cc
Confidence 3 22 1 22 2445555555555544321 2223355555555555544321 222344555555555554 34
Q ss_pred cccccCcccccccceEeeccCcCC-CCCcccccCCCCccEEEeeCC
Q 035853 511 EEWTMENDAMPKLESLIINPCAYL-KILPEELWRIKSLTKLELWWP 555 (581)
Q Consensus 511 ~~l~~~~~~l~~L~~L~l~~c~~l-~~lp~~l~~l~~L~~L~l~~c 555 (581)
..+|..+..+++|+.|++++|+.. ..+|..+..+++|+.+++.+|
T Consensus 227 ~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 227 VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp CEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 445554555555555555555543 334444455555555544433
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-21 Score=205.21 Aligned_cols=237 Identities=16% Similarity=0.102 Sum_probs=189.4
Q ss_pred hccCCceeEEEecCcccccCC-CcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEe
Q 035853 274 CKWFKFLRLLDLGTIVLDEYP-AGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHL 352 (581)
Q Consensus 274 ~~~~~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L 352 (581)
...+++|++|+|++|.++.++ ..++.+++|++|+|++|.+...++ ++.+++|++|++++|.+..+|. .++|++|
T Consensus 30 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L 104 (487)
T 3oja_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETL 104 (487)
T ss_dssp STTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEE
T ss_pred cccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEE
Confidence 344558999999999998554 679999999999999999986654 8899999999999998888775 4899999
Q ss_pred ecCCcccCCCCCCccCCCCCCcEeceecCC--CcchhhhCCCCCCCeEEEeeecccchhchhhhcC-CCCCCCEEEeecC
Q 035853 353 NFGSITLPAHPGKCCSSLENLNFISVLHPS--SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLC-PLLHLESLKLVDE 429 (581)
Q Consensus 353 ~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~-~~~~L~~L~l~~~ 429 (581)
++++|.+.+..+ ..+++|+.|++.++. ...+..++.+++|+.|++++|. .....|..+. .+++|+.|+++++
T Consensus 105 ~L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 105 HAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE--IDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp ECCSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC--CCEEEGGGGGGGTTTCCEEECTTS
T ss_pred ECcCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC--CCCcChHHHhhhCCcccEEecCCC
Confidence 999999875443 246789999999888 4445677889999999999986 5555666665 6889999999986
Q ss_pred CcccCCcccc-cCCCCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCC
Q 035853 430 RTIALQPSSI-VLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMF 508 (581)
Q Consensus 430 ~~i~L~~l~l-~lp~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 508 (581)
. + .+|....+++|++|+|++|.+++ .++.++.+++|+.|++++|.+.+ ++..+..+++|+.|++++|+
T Consensus 180 ~--------l~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 180 F--------IYDVKGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp C--------CCEEECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCC
T ss_pred c--------cccccccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc--cchhhccCCCCCEEEcCCCC
Confidence 6 6 55634468999999999998765 44558889999999999888764 45567788999999999986
Q ss_pred cc-cccccCcccccccceEeeccC
Q 035853 509 WL-EEWTMENDAMPKLESLIINPC 531 (581)
Q Consensus 509 ~l-~~l~~~~~~l~~L~~L~l~~c 531 (581)
.. ..+|..+..++.|+.+.+..+
T Consensus 249 l~c~~~~~~~~~l~~L~~l~~~~~ 272 (487)
T 3oja_A 249 FHCGTLRDFFSKNQRVQTVAKQTV 272 (487)
T ss_dssp BCHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcCcchHHHHHhCCCCcEEecccc
Confidence 44 366677788888888888633
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.82 E-value=5.9e-23 Score=216.70 Aligned_cols=324 Identities=15% Similarity=0.048 Sum_probs=223.2
Q ss_pred CCeeEEEEEecccC-CCcccc-c--CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCccccc-CCCcc
Q 035853 223 EDFKRISVCRTVTN-FDSWEH-F--DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDE-YPAGI 297 (581)
Q Consensus 223 ~~~r~lsl~~~~~~-~~~~~~-~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~-lp~~i 297 (581)
.+.+++.+. +... ...... + ++++++|.+.++...... + ... ...+..+++|++|++++|.+.. .+..+
T Consensus 3 ~~l~~L~Ls-~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~-~-~~l---~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 76 (461)
T 1z7x_W 3 LDIQSLDIQ-CEELSDARWAELLPLLQQCQVVRLDDCGLTEAR-C-KDI---SSALRVNPALAELNLRSNELGDVGVHCV 76 (461)
T ss_dssp EEEEEEEEE-SCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHH-H-HHH---HHHHHTCTTCCEEECTTCCCHHHHHHHH
T ss_pred ccceehhhh-hcccCchhHHHHHhhcCCccEEEccCCCCCHHH-H-HHH---HHHHHhCCCcCEEeCCCCcCChHHHHHH
Confidence 456777887 4433 222233 2 889999999988764310 0 123 5678888999999999998762 22222
Q ss_pred -cCcC----CCcEEeccCCCCc-----ccChhhhcccCCcEEEecCCccccc-chhhh-----cCCCCcEeecCCcccCC
Q 035853 298 -NPLL----LLKYLVLNIPSLK-----HLPSSLCNLLSLHTLDMRWSYIHHT-PDEIW-----KMNELRHLNFGSITLPA 361 (581)
Q Consensus 298 -~~l~----~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~l~~l-p~~i~-----~l~~L~~L~l~~~~~~~ 361 (581)
..+. +|++|++++|.+. .+|..+.++++|++|++++|.+... +..+. ..++|++|++++|.+..
T Consensus 77 ~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 156 (461)
T 1z7x_W 77 LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA 156 (461)
T ss_dssp HHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred HHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCH
Confidence 2334 6999999999887 4678889999999999999976432 22222 25679999999998765
Q ss_pred C----CCCccCCCCCCcEeceecCC--CcchhhhC-----CCCCCCeEEEeeec--ccchhchhhhcCCCCCCCEEEeec
Q 035853 362 H----PGKCCSSLENLNFISVLHPS--SCTQDILG-----RLPSLQTFRVHENL--SSYQSMLSNNLCPLLHLESLKLVD 428 (581)
Q Consensus 362 ~----~p~~i~~l~~L~~L~l~~~~--~~~~~~l~-----~l~~L~~L~l~~~~--~~~~~~l~~~l~~~~~L~~L~l~~ 428 (581)
. ++..+..+++|++|++.++. ...+..+. ..++|+.|++++|. ......++..+..+++|+.|++++
T Consensus 157 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 236 (461)
T 1z7x_W 157 ASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS 236 (461)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccC
Confidence 3 34556678899999999887 22222222 36689999999986 112224677788889999999998
Q ss_pred CCcccCCcccc-cC-C-CCCCCCCccEEEEeeccCCCC----CcccccCCCCCCeEEEecCcccCceee----eCCCCCC
Q 035853 429 ERTIALQPSSI-VL-P-EYQFPPRLIELSLSNTELKYD----PMPALEKLPHLRVLKLKKNSFFGRKLV----CSSGGFP 497 (581)
Q Consensus 429 ~~~i~L~~l~l-~l-p-~~~~l~~L~~L~L~~~~l~~~----~~~~l~~l~~L~~L~L~~~~~~~~~~~----~~~~~~~ 497 (581)
+. + ....+ .+ + ....+++|++|++++|.++.. .+..+..+++|++|++++|.+.+.... ......+
T Consensus 237 n~-l--~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 313 (461)
T 1z7x_W 237 NK-L--GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGC 313 (461)
T ss_dssp SB-C--HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTC
T ss_pred Cc-C--ChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCc
Confidence 54 0 00001 12 2 345689999999999987654 355677799999999998877543211 1123447
Q ss_pred CCcEEEecCCCcccc-----cccCcccccccceEeeccCcCCCCCcc----cccC-CCCccEEEeeCCC
Q 035853 498 SLKVMHLKSMFWLEE-----WTMENDAMPKLESLIINPCAYLKILPE----ELWR-IKSLTKLELWWPR 556 (581)
Q Consensus 498 ~L~~L~l~~~~~l~~-----l~~~~~~l~~L~~L~l~~c~~l~~lp~----~l~~-l~~L~~L~l~~c~ 556 (581)
+|++|++++|. +.. ++..+..+++|+.|++++|......+. .+.. .++|++|++++|.
T Consensus 314 ~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 314 QLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp CCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred cceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 99999999985 442 455567789999999999964332222 3332 6899999999997
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.80 E-value=8e-20 Score=193.40 Aligned_cols=231 Identities=13% Similarity=0.047 Sum_probs=135.3
Q ss_pred CcCCCcEEeccCCCCcccC-hhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEec
Q 035853 299 PLLLLKYLVLNIPSLKHLP-SSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFIS 377 (581)
Q Consensus 299 ~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 377 (581)
.+++|++|+|++|.+..+| ..++.+++|++|++++|.+...+. ++.+++|++|++++|.+.+ +| ..++|+.|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~----~~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE-LL----VGPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEE-EE----ECTTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCC-CC----CCCCcCEEE
Confidence 4458999999999998665 688999999999999998876665 8889999999999998763 32 237888888
Q ss_pred eecCC-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-c-CC-CCC-CCCCccE
Q 035853 378 VLHPS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-V-LP-EYQ-FPPRLIE 452 (581)
Q Consensus 378 l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~-lp-~~~-~l~~L~~ 452 (581)
+.++. ...+. ..+++|+.|++++|. .....|..+..+++|+.|+++++. + . .| .+. .+++|++
T Consensus 106 L~~N~l~~~~~--~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~Ls~N~--------l~~~~~~~l~~~l~~L~~ 173 (487)
T 3oja_A 106 AANNNISRVSC--SRGQGKKNIYLANNK--ITMLRDLDEGCRSRVQYLDLKLNE--------IDTVNFAELAASSDTLEH 173 (487)
T ss_dssp CCSSCCCCEEE--CCCSSCEEEECCSSC--CCSGGGBCGGGGSSEEEEECTTSC--------CCEEEGGGGGGGTTTCCE
T ss_pred CcCCcCCCCCc--cccCCCCEEECCCCC--CCCCCchhhcCCCCCCEEECCCCC--------CCCcChHHHhhhCCcccE
Confidence 88776 33332 235677777777775 444444455555555555555533 3 1 22 222 4455555
Q ss_pred EEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccCcccccccceEeeccCc
Q 035853 453 LSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCA 532 (581)
Q Consensus 453 L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 532 (581)
|+|++|.+++. +....+++|+.|++++|.+.+. +..+..+++|+.|++++| .+..+|..+..+++|+.|++++|+
T Consensus 174 L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 174 LNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFM--GPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp EECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEE--CGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCC
T ss_pred EecCCCccccc--cccccCCCCCEEECCCCCCCCC--CHhHcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCC
Confidence 55555544322 2233355555555554444331 122344455555555554 344444444455555555555554
Q ss_pred CC-CCCcccccCCCCccEEEe
Q 035853 533 YL-KILPEELWRIKSLTKLEL 552 (581)
Q Consensus 533 ~l-~~lp~~l~~l~~L~~L~l 552 (581)
.. ..+|..+..++.|+.+.+
T Consensus 249 l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 249 FHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp BCHHHHHHHHTTCHHHHHHHH
T ss_pred CcCcchHHHHHhCCCCcEEec
Confidence 33 234444444444444433
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.3e-21 Score=209.06 Aligned_cols=323 Identities=13% Similarity=0.056 Sum_probs=174.0
Q ss_pred CCeeEEEEEecccCC-Cccccc---C-CcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCccccc-----
Q 035853 223 EDFKRISVCRTVTNF-DSWEHF---D-TYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDE----- 292 (581)
Q Consensus 223 ~~~r~lsl~~~~~~~-~~~~~~---~-~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~----- 292 (581)
...+.+.+. ..... .....+ + ++|+.|.+.++..... ... ......+++|++|+|++|.+..
T Consensus 112 ~~L~~L~L~-~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~----~~l---~~~~~~~~~L~~L~L~~~~~~~~~~~~ 183 (592)
T 3ogk_B 112 RQLKSVHFR-RMIVSDLDLDRLAKARADDLETLKLDKCSGFTT----DGL---LSIVTHCRKIKTLLMEESSFSEKDGKW 183 (592)
T ss_dssp TTCCEEEEE-SCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEH----HHH---HHHHHHCTTCSEEECTTCEEECCCSHH
T ss_pred CCCCeEEee-ccEecHHHHHHHHHhccccCcEEECcCCCCcCH----HHH---HHHHhhCCCCCEEECccccccCcchhH
Confidence 457777777 43221 112222 2 3488888887663220 122 4555688899999999887652
Q ss_pred CCCcccCcCCCcEEeccCCCCc-----ccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccC-------
Q 035853 293 YPAGINPLLLLKYLVLNIPSLK-----HLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLP------- 360 (581)
Q Consensus 293 lp~~i~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~------- 360 (581)
++..+..+++|++|++++|.+. .++..+.++++|++|++++|.+..+|..+..+++|++|+++.+...
T Consensus 184 l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 263 (592)
T 3ogk_B 184 LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKY 263 (592)
T ss_dssp HHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSS
T ss_pred HHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHH
Confidence 2233456788888888888775 4555567888899999988888778877888888888888643221
Q ss_pred -------------------CCCCCccCCCCCCcEeceecCC---CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCC
Q 035853 361 -------------------AHPGKCCSSLENLNFISVLHPS---SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPL 418 (581)
Q Consensus 361 -------------------~~~p~~i~~l~~L~~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~ 418 (581)
..+|..+..+++|++|++.+|. ......+..+++|+.|+++++- ....++.....+
T Consensus 264 ~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~--~~~~l~~~~~~~ 341 (592)
T 3ogk_B 264 MNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVI--GDRGLEVLAQYC 341 (592)
T ss_dssp SCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGG--HHHHHHHHHHHC
T ss_pred HHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCcc--CHHHHHHHHHhC
Confidence 1222233344455555555544 1112234555555555555332 223333333445
Q ss_pred CCCCEEEeec----------CCcc-------------cCCcccc---cCC-----CCC-CCCCccEEEEee----ccCCC
Q 035853 419 LHLESLKLVD----------ERTI-------------ALQPSSI---VLP-----EYQ-FPPRLIELSLSN----TELKY 462 (581)
Q Consensus 419 ~~L~~L~l~~----------~~~i-------------~L~~l~l---~lp-----~~~-~l~~L~~L~L~~----~~l~~ 462 (581)
++|++|+++. +..+ .|+.+.+ .+. .+. .+++|++|++++ +.+++
T Consensus 342 ~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~ 421 (592)
T 3ogk_B 342 KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITD 421 (592)
T ss_dssp TTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSS
T ss_pred CCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccC
Confidence 5666666662 1111 1111111 000 111 144555555542 12222
Q ss_pred C-----CcccccCCCCCCeEEEecCc--ccCceeeeCCCCCCCCcEEEecCCCccc--ccccCcccccccceEeeccCcC
Q 035853 463 D-----PMPALEKLPHLRVLKLKKNS--FFGRKLVCSSGGFPSLKVMHLKSMFWLE--EWTMENDAMPKLESLIINPCAY 533 (581)
Q Consensus 463 ~-----~~~~l~~l~~L~~L~L~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~l~~~~~~l~~L~~L~l~~c~~ 533 (581)
. ....+..+++|+.|+++.|. +.+..+......+++|+.|++++|. +. .++.....+++|++|++++|+.
T Consensus 422 ~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~l 500 (592)
T 3ogk_B 422 LPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCCF 500 (592)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCCC
T ss_pred chHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCCC
Confidence 1 11113345555555554322 2222222222336667777777663 33 2334446677888888888873
Q ss_pred CC-CCcccccCCCCccEEEeeCCC
Q 035853 534 LK-ILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 534 l~-~lp~~l~~l~~L~~L~l~~c~ 556 (581)
.. .++.....+++|++|++++|+
T Consensus 501 ~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 501 SERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp BHHHHHHHHHHCSSCCEEEEESCB
T ss_pred cHHHHHHHHHhcCccCeeECcCCc
Confidence 21 244455567788888888877
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-18 Score=168.53 Aligned_cols=195 Identities=25% Similarity=0.241 Sum_probs=124.4
Q ss_pred ceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccCh-hhhcccCCcEEEecCCcccccchhh-hcCCCCcEeecCC
Q 035853 279 FLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPS-SLCNLLSLHTLDMRWSYIHHTPDEI-WKMNELRHLNFGS 356 (581)
Q Consensus 279 ~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~ 356 (581)
..+.++++++.++.+|..+. .+|++|++++|.+..+|. .++++++|++|++++|.+..+|..+ ..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 46788898888888887665 588999999998887774 6888899999999988888888765 6788999999988
Q ss_pred cccCCCCCCccCCCCCCcEeceecCC-Cc-chhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccC
Q 035853 357 ITLPAHPGKCCSSLENLNFISVLHPS-SC-TQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIAL 434 (581)
Q Consensus 357 ~~~~~~~p~~i~~l~~L~~L~l~~~~-~~-~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L 434 (581)
|.+....+..+..+++|+.|++.++. .. .+..++.+++|+.|+++++. .....+..+.
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~------------------ 154 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE--LQSLPKGVFD------------------ 154 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTT------------------
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc--CCccCHhHcc------------------
Confidence 88875444556777777777777766 22 23335666666666666664 2222222234
Q ss_pred CcccccCCCCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCC
Q 035853 435 QPSSIVLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSM 507 (581)
Q Consensus 435 ~~l~l~lp~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 507 (581)
.+++|++|++++|.++...+..+..+++|++|++++|.+.... +..+..+++|+.|++++|
T Consensus 155 -----------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 155 -----------KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP-EGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp -----------TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSS
T ss_pred -----------CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC-HHHhccccCCCEEEecCC
Confidence 4444445555444444333334445555555555544443221 222344555555555554
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-20 Score=190.34 Aligned_cols=249 Identities=18% Similarity=0.173 Sum_probs=138.3
Q ss_pred ceeEEEecCcccccCCCcccCc--CCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccc--cchhhhcCCCCcEeec
Q 035853 279 FLRLLDLGTIVLDEYPAGINPL--LLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHH--TPDEIWKMNELRHLNF 354 (581)
Q Consensus 279 ~Lr~L~L~~~~l~~lp~~i~~l--~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l 354 (581)
.++.++++++.+. +..+..+ +++++|+++++.+...+..+.++++|++|++++|.+.. +|..+..+++|++|++
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 3555555555443 2233333 45555555555555444444555555555555554432 4444555555555555
Q ss_pred CCcccCCCCCCccCCCCCCcEeceecCC--C--cchhhhCCCCCCCeEEEeeecccchhchhhhcCCCC-CCCEEEeecC
Q 035853 355 GSITLPAHPGKCCSSLENLNFISVLHPS--S--CTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLL-HLESLKLVDE 429 (581)
Q Consensus 355 ~~~~~~~~~p~~i~~l~~L~~L~l~~~~--~--~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~-~L~~L~l~~~ 429 (581)
++|.+....+..++.+++|++|++.+|. . .++..+..+++|+.|++++|.......++..+..++ +|++|+++++
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 5555544444445555555555555552 1 234445556666666666662011112444455555 6666666653
Q ss_pred C-cccCCcccc---cCC-CCCCCCCccEEEEeecc-CCCCCcccccCCCCCCeEEEecCc-ccCceeeeCCCCCCCCcEE
Q 035853 430 R-TIALQPSSI---VLP-EYQFPPRLIELSLSNTE-LKYDPMPALEKLPHLRVLKLKKNS-FFGRKLVCSSGGFPSLKVM 502 (581)
Q Consensus 430 ~-~i~L~~l~l---~lp-~~~~l~~L~~L~L~~~~-l~~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~~~~~~~~L~~L 502 (581)
. . + .+| .+..+++|++|++++|. ++...+..++.+++|++|++++|. ..... ...+..+++|+.|
T Consensus 206 ~~~-------~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~l~~~~~L~~L 277 (336)
T 2ast_B 206 RKN-------LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET-LLELGEIPTLKTL 277 (336)
T ss_dssp GGG-------SCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG-GGGGGGCTTCCEE
T ss_pred ccc-------CCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHH-HHHHhcCCCCCEE
Confidence 2 0 1 233 34556778888888777 555667778888888888888774 22222 1235568888888
Q ss_pred EecCCCccccccc-Ccccc-cccceEeeccCcCCCCCccccc
Q 035853 503 HLKSMFWLEEWTM-ENDAM-PKLESLIINPCAYLKILPEELW 542 (581)
Q Consensus 503 ~l~~~~~l~~l~~-~~~~l-~~L~~L~l~~c~~l~~lp~~l~ 542 (581)
++++| ++. .+..+ .+|+.|++++|......|..+.
T Consensus 278 ~l~~~-----i~~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 278 QVFGI-----VPDGTLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp ECTTS-----SCTTCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred eccCc-----cCHHHHHHHHhhCcceEEecccCccccCCccc
Confidence 88887 222 12233 3466677877765555665443
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=8.1e-19 Score=171.75 Aligned_cols=198 Identities=21% Similarity=0.191 Sum_probs=130.9
Q ss_pred CceeEEEecCcccccCCC-cccCcCCCcEEeccCCCCcccCh-hhhcccCCcEEEecCCcccccc-hhhhcCCCCcEeec
Q 035853 278 KFLRLLDLGTIVLDEYPA-GINPLLLLKYLVLNIPSLKHLPS-SLCNLLSLHTLDMRWSYIHHTP-DEIWKMNELRHLNF 354 (581)
Q Consensus 278 ~~Lr~L~L~~~~l~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l 354 (581)
++|++|+++++.++.++. .+.++++|++|++++|.+..++. .++++++|++|++++|.+..++ ..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 357777777777775543 67777777777777777775553 5677777777777777766665 44667777777777
Q ss_pred CCcccCCCCCCccCCCCCCcEeceecCC-C--cchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCC----EEEee
Q 035853 355 GSITLPAHPGKCCSSLENLNFISVLHPS-S--CTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLE----SLKLV 427 (581)
Q Consensus 355 ~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~--~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~----~L~l~ 427 (581)
++|.+....+..++.+++|++|++.++. . .++..++.+++|+.|++++|. .....+..+..+.+|+ +|+++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~l~l~L~ls 185 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK--IQSIYCTDLRVLHQMPLLNLSLDLS 185 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC--CCEECGGGGHHHHTCTTCCEEEECC
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC--CCcCCHHHhhhhhhccccceeeecC
Confidence 7777765444457777777777777776 2 246667777777777777775 3333333343334444 66666
Q ss_pred cCCcccCCcccc-cCC-CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCccc
Q 035853 428 DERTIALQPSSI-VLP-EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFF 485 (581)
Q Consensus 428 ~~~~i~L~~l~l-~lp-~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~ 485 (581)
++. + .+| ......+|++|++++|.++......++.+++|+.|++++|.+.
T Consensus 186 ~n~--------l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 186 LNP--------MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp SSC--------CCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred CCc--------ccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 644 5 555 4334457888888888776555555677788888888777653
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=9.4e-19 Score=171.27 Aligned_cols=216 Identities=20% Similarity=0.223 Sum_probs=137.4
Q ss_pred EEEecCcccccCCCcccCcCCCcEEeccCCCCcccCh-hhhcccCCcEEEecCCcccccch-hhhcCCCCcEeecCCccc
Q 035853 282 LLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPS-SLCNLLSLHTLDMRWSYIHHTPD-EIWKMNELRHLNFGSITL 359 (581)
Q Consensus 282 ~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~ 359 (581)
..+..+..+..+|..+. ++|++|++++|.++.++. .++++++|++|++++|.+..++. .+..+++|++|++++|.+
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 34555666778887665 589999999999997775 78899999999999998888775 578899999999999988
Q ss_pred CCCCCCccCCCCCCcEeceecCC-Ccchh-hhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcc
Q 035853 360 PAHPGKCCSSLENLNFISVLHPS-SCTQD-ILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPS 437 (581)
Q Consensus 360 ~~~~p~~i~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l 437 (581)
.+..+..+.++++|++|++.++. ...+. .++.+++|+.|+++++. ....
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~--------------------------- 139 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL--IQSF--------------------------- 139 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC--CCCC---------------------------
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc--ccee---------------------------
Confidence 76555667777777777776665 22222 34455555555555543 1110
Q ss_pred cccCC-CCCCCCCccEEEEeeccCCCCCcccccCCCCCC----eEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccc
Q 035853 438 SIVLP-EYQFPPRLIELSLSNTELKYDPMPALEKLPHLR----VLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEE 512 (581)
Q Consensus 438 ~l~lp-~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~----~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 512 (581)
.+| ++..+++|++|++++|.+++..+..+..+++|+ .|++++|.+.+. +.......+|+.|++++| .++.
T Consensus 140 --~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~--~~~~~~~~~L~~L~L~~n-~l~~ 214 (276)
T 2z62_A 140 --KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI--QPGAFKEIRLKELALDTN-QLKS 214 (276)
T ss_dssp --CCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEE--CTTSSCSCCEEEEECCSS-CCSC
T ss_pred --cCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCccccc--CccccCCCcccEEECCCC-ceee
Confidence 133 445556666666666665544444455444454 566666655422 112222336666666665 3555
Q ss_pred cccC-cccccccceEeeccCcC
Q 035853 513 WTME-NDAMPKLESLIINPCAY 533 (581)
Q Consensus 513 l~~~-~~~l~~L~~L~l~~c~~ 533 (581)
+|.. +..+++|+.|++++|+.
T Consensus 215 ~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 215 VPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp CCTTTTTTCCSCCEEECCSSCB
T ss_pred cCHhHhcccccccEEEccCCcc
Confidence 5443 35566666666666653
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.78 E-value=4.1e-20 Score=201.35 Aligned_cols=306 Identities=14% Similarity=0.022 Sum_probs=162.5
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCC----cccChh
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSL----KHLPSS 319 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i----~~lp~~ 319 (581)
+++|++|.+.++....... ... ...+.++++|+.|++++|.+..+|..+..+++|++|+++.... ...+..
T Consensus 191 ~~~L~~L~L~~n~~~~~~~--~~l---~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 265 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISP--KDL---ETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMN 265 (592)
T ss_dssp CCCCCEEECTTCCCSSCCH--HHH---HHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSC
T ss_pred CCCccEEEeeccCCCccCH--HHH---HHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHH
Confidence 4555555555444321110 122 3444555666666666655554444444555555555543211 122223
Q ss_pred hhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCC-CccCCCCCCcEeceecCC--CcchhhhCCCCCCC
Q 035853 320 LCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPG-KCCSSLENLNFISVLHPS--SCTQDILGRLPSLQ 396 (581)
Q Consensus 320 i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~ 396 (581)
+..+++|+.|+++++....+|..+..+++|++|++++|.+..... ..+..+++|++|++..+. ..++.....+++|+
T Consensus 266 l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~ 345 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLK 345 (592)
T ss_dssp CCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCC
T ss_pred hhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCC
Confidence 334444444444444344455555556666666666665432111 223455555555555222 22222223445555
Q ss_pred eEEEee----------ecccchhchhhhcCCCCCCCEEEeecCC---c----c-----cCCccc---------c-cC---
Q 035853 397 TFRVHE----------NLSSYQSMLSNNLCPLLHLESLKLVDER---T----I-----ALQPSS---------I-VL--- 441 (581)
Q Consensus 397 ~L~l~~----------~~~~~~~~l~~~l~~~~~L~~L~l~~~~---~----i-----~L~~l~---------l-~l--- 441 (581)
+|++++ |.......+......+++|++|+++.+. . + +|+.+. + ..
T Consensus 346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~ 425 (592)
T 3ogk_B 346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD 425 (592)
T ss_dssp EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH
T ss_pred EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH
Confidence 555552 2211111122222234444444443211 0 0 111111 2 21
Q ss_pred ---C-CCCCCCCccEEEEeecc--CCCCCccccc-CCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccc--
Q 035853 442 ---P-EYQFPPRLIELSLSNTE--LKYDPMPALE-KLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEE-- 512 (581)
Q Consensus 442 ---p-~~~~l~~L~~L~L~~~~--l~~~~~~~l~-~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-- 512 (581)
+ .+..+++|++|+++.|. +++..+..++ .+++|++|++++|.+.+..++....++++|+.|++++|+ +..
T Consensus 426 ~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~ 504 (592)
T 3ogk_B 426 NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERA 504 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHH
T ss_pred HHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHH
Confidence 1 13458999999998764 4444444444 489999999999988766555556789999999999997 442
Q ss_pred cccCcccccccceEeeccCcCCCC-CcccccCCCCccEEEeeCC
Q 035853 513 WTMENDAMPKLESLIINPCAYLKI-LPEELWRIKSLTKLELWWP 555 (581)
Q Consensus 513 l~~~~~~l~~L~~L~l~~c~~l~~-lp~~l~~l~~L~~L~l~~c 555 (581)
++.....+++|+.|++++|..... +......+|.+....+...
T Consensus 505 ~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 505 IAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 444456899999999999994432 2223346788887777765
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=8.8e-19 Score=174.20 Aligned_cols=192 Identities=20% Similarity=0.220 Sum_probs=133.4
Q ss_pred ccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeec
Q 035853 275 KWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNF 354 (581)
Q Consensus 275 ~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 354 (581)
..+++|+.|+++++.++.+| .+..+++|++|++++|.+..+|. ++.+++|++|++++|.+..+| .+..+++|++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEEC
T ss_pred HHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEEC
Confidence 35667888888888877766 57778888888888888887776 778888888888888777776 4777888888888
Q ss_pred CCcccCCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCccc
Q 035853 355 GSITLPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIA 433 (581)
Q Consensus 355 ~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~ 433 (581)
++|.+.. ++ .+..+++|+.|++.++. ...+. ++.+++|+.|++++|. . ..++. +..+++|+.|+++++.
T Consensus 115 ~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~--l-~~~~~-l~~l~~L~~L~l~~n~--- 184 (308)
T 1h6u_A 115 TSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ--V-SDLTP-LANLSKLTTLKADDNK--- 184 (308)
T ss_dssp TTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC--C-CCCGG-GTTCTTCCEEECCSSC---
T ss_pred CCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc--C-CCChh-hcCCCCCCEEECCCCc---
Confidence 8887763 33 37777888888877777 33333 6677788888887774 2 22333 6666777777776644
Q ss_pred CCcccc-cCCCCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccC
Q 035853 434 LQPSSI-VLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFG 486 (581)
Q Consensus 434 L~~l~l-~lp~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~ 486 (581)
+ .+|.+..+++|++|++++|.+.+.. .+..+++|+.|++++|.+.+
T Consensus 185 -----l~~~~~l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 185 -----ISDISPLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp -----CCCCGGGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred -----cCcChhhcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 4 3333455667777777777665432 36677777777777666544
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.4e-18 Score=167.89 Aligned_cols=82 Identities=20% Similarity=0.237 Sum_probs=37.3
Q ss_pred CCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchh-hhcCCCCcEeecC
Q 035853 277 FKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDE-IWKMNELRHLNFG 355 (581)
Q Consensus 277 ~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~ 355 (581)
+++|+.|+++++.++.++ .+..+++|++|++++|.+..++ .++++++|++|++++|.+..+|.. +..+++|++|+++
T Consensus 40 l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred ccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence 444444555544444333 2444444555555444444432 344444444444444444444332 2444444444444
Q ss_pred CcccC
Q 035853 356 SITLP 360 (581)
Q Consensus 356 ~~~~~ 360 (581)
+|.+.
T Consensus 118 ~n~l~ 122 (272)
T 3rfs_A 118 ENQLQ 122 (272)
T ss_dssp TSCCC
T ss_pred CCcCC
Confidence 44443
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-18 Score=169.41 Aligned_cols=171 Identities=22% Similarity=0.283 Sum_probs=131.8
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChh-hhc
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSS-LCN 322 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~ 322 (581)
+++++.|.+.++.... .+.+..+++|++|++++|.++.++ .++.+++|++|++++|.++.+|.. +++
T Consensus 40 l~~L~~L~l~~~~i~~-----------~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 107 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKS-----------VQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDK 107 (272)
T ss_dssp HTTCCEEECTTSCCCC-----------CTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred ccceeeeeeCCCCccc-----------ccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcC
Confidence 7788888888877643 355788999999999999988765 788999999999999999977754 689
Q ss_pred ccCCcEEEecCCcccccchh-hhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC-Ccch-hhhCCCCCCCeEE
Q 035853 323 LLSLHTLDMRWSYIHHTPDE-IWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS-SCTQ-DILGRLPSLQTFR 399 (581)
Q Consensus 323 L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~ 399 (581)
+++|++|++++|.+..+|.. ++.+++|++|++++|.+.+..+..++.+++|+.|++.++. ...+ ..++.+++|+.|+
T Consensus 108 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 187 (272)
T 3rfs_A 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR 187 (272)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEE
Confidence 99999999999999888765 6889999999999998885555557888888888888887 3333 3356777788887
Q ss_pred EeeecccchhchhhhcCCCCCCCEEEeec
Q 035853 400 VHENLSSYQSMLSNNLCPLLHLESLKLVD 428 (581)
Q Consensus 400 l~~~~~~~~~~l~~~l~~~~~L~~L~l~~ 428 (581)
+++|. .....+..+..+++|+.|++++
T Consensus 188 L~~N~--l~~~~~~~~~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 188 LYQNQ--LKSVPDGVFDRLTSLQYIWLHD 214 (272)
T ss_dssp CCSSC--CSCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCc--CCccCHHHHhCCcCCCEEEccC
Confidence 77775 3333333344555555555544
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.76 E-value=7.1e-18 Score=166.02 Aligned_cols=196 Identities=17% Similarity=0.121 Sum_probs=138.2
Q ss_pred hccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCccc-ChhhhcccCCcEEEecCCcccccchhhhcCCCCcEe
Q 035853 274 CKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHL-PSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHL 352 (581)
Q Consensus 274 ~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L 352 (581)
+.++++++.++++++.++.+|..+. +++++|++++|.+..+ |..+..+++|++|++++|.+..+|.. +.+++|++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence 5677888999999888888887765 6889999999988855 46788889999999999888888764 778889999
Q ss_pred ecCCcccCCCCCCccCCCCCCcEeceecCC-Ccch-hhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCC
Q 035853 353 NFGSITLPAHPGKCCSSLENLNFISVLHPS-SCTQ-DILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDER 430 (581)
Q Consensus 353 ~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~ 430 (581)
++++|.+. .+|..+..+++|+.|++.++. ..++ ..+..+++|+.|+++++. .....+..+..+++|+.|+++++.
T Consensus 83 ~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE--LKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC--CCCCCTTTTTTCTTCCEEECTTSC
T ss_pred ECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC--CCccChhhcccccCCCEEECCCCc
Confidence 99988886 677777888888888888777 4333 456777777777777774 333333344556666666666544
Q ss_pred cccCCcccc-cCC--CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcc
Q 035853 431 TIALQPSSI-VLP--EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSF 484 (581)
Q Consensus 431 ~i~L~~l~l-~lp--~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~ 484 (581)
+ .+| .+..+++|++|++++|.++ ..+..+..+++|+.+++++|.+
T Consensus 160 --------l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 160 --------LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp --------CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred --------CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 4 555 3455666666666666554 3444455555666666665543
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-18 Score=166.60 Aligned_cols=110 Identities=16% Similarity=0.340 Sum_probs=65.4
Q ss_pred cccCCCcccCcCCCcEEeccCCCCcccCh-hhhcccCCcEEEecCCc-ccccch-hhhcCCCCcEeecCC-cccCCCCCC
Q 035853 290 LDEYPAGINPLLLLKYLVLNIPSLKHLPS-SLCNLLSLHTLDMRWSY-IHHTPD-EIWKMNELRHLNFGS-ITLPAHPGK 365 (581)
Q Consensus 290 l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~-l~~lp~-~i~~l~~L~~L~l~~-~~~~~~~p~ 365 (581)
++.+|. +.. +|++|++++|.++.+|. .++++++|++|++++|. +..+|. .+..+++|++|++++ |.+....+.
T Consensus 23 l~~ip~-~~~--~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS-LPP--STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC-CCT--TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC-CCC--cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 555665 332 67777777777776654 56667777777777774 666664 456667777777766 555533334
Q ss_pred ccCCCCCCcEeceecCC-CcchhhhCCCCCCC---eEEEeee
Q 035853 366 CCSSLENLNFISVLHPS-SCTQDILGRLPSLQ---TFRVHEN 403 (581)
Q Consensus 366 ~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~---~L~l~~~ 403 (581)
.+..+++|+.|++.++. ..++. ++.+++|+ .|+++++
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESC
T ss_pred HhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCC
Confidence 45556666666665555 33332 44555555 6666655
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-17 Score=162.68 Aligned_cols=196 Identities=21% Similarity=0.286 Sum_probs=147.1
Q ss_pred CCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccch-hhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEecee
Q 035853 301 LLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPD-EIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVL 379 (581)
Q Consensus 301 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~ 379 (581)
.+.++++++++.++.+|..+. .+|++|++++|.+..+|. .+..+++|++|++++|.+....+..+.++++|++|++.
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 357889999999998887664 689999999998888875 57889999999999988874333345667777777766
Q ss_pred cCC-Ccch-hhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC--CCCCCCCccEEE
Q 035853 380 HPS-SCTQ-DILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP--EYQFPPRLIELS 454 (581)
Q Consensus 380 ~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp--~~~~l~~L~~L~ 454 (581)
++. ..++ ..+..+++|+.|+++++ . + .+| .+..+++|++|+
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n--------------------------~--------l~~~~~~~~~~l~~L~~L~ 139 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRN--------------------------Q--------LKSLPPRVFDSLTKLTYLS 139 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSS--------------------------C--------CCCCCTTTTTTCTTCCEEE
T ss_pred CCcCCcCCHhHcccccCCCEEECCCC--------------------------c--------cCeeCHHHhCcCcCCCEEE
Confidence 665 2222 22344555555555444 3 4 344 467788999999
Q ss_pred EeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCccccccc-CcccccccceEeeccCcC
Q 035853 455 LSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTM-ENDAMPKLESLIINPCAY 533 (581)
Q Consensus 455 L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~ 533 (581)
+++|.+.......++.+++|+.|++++|.+.... +..+..+++|+.|++++| .+..++. .+..+++|+.|++++|+.
T Consensus 140 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 140 LGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP-EGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCCcCCccCHhHccCCcccceeEecCCcCcEeC-hhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCCe
Confidence 9999887766667899999999999988876543 344678899999999998 5777765 477899999999999985
Q ss_pred C
Q 035853 534 L 534 (581)
Q Consensus 534 l 534 (581)
.
T Consensus 218 ~ 218 (270)
T 2o6q_A 218 D 218 (270)
T ss_dssp C
T ss_pred e
Confidence 4
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.75 E-value=4.9e-18 Score=167.17 Aligned_cols=196 Identities=22% Similarity=0.208 Sum_probs=139.7
Q ss_pred ccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccc-hhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcE
Q 035853 297 INPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTP-DEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNF 375 (581)
Q Consensus 297 i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 375 (581)
++++++++.++++++.++.+|..+. +++++|++++|.+..++ ..+..+++|++|++++|.+.. ++.. +.+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcCCE
Confidence 5678899999999999999997774 78999999999887775 568889999999999998863 3433 67888888
Q ss_pred eceecCC-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC--CCCCCCCcc
Q 035853 376 ISVLHPS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP--EYQFPPRLI 451 (581)
Q Consensus 376 L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp--~~~~l~~L~ 451 (581)
|+++++. ..++..+..+++|+.|+++++. .....+..+..+++|+.|+++++. + .+| .+..+++|+
T Consensus 82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~--l~~l~~~~~~~l~~L~~L~L~~N~--------l~~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNR--LTSLPLGALRGLGELQELYLKGNE--------LKTLPPGLLTPTPKLE 151 (290)
T ss_dssp EECCSSCCSSCCCCTTTCTTCCEEECCSSC--CCCCCSSTTTTCTTCCEEECTTSC--------CCCCCTTTTTTCTTCC
T ss_pred EECCCCcCCcCchhhccCCCCCEEECCCCc--CcccCHHHHcCCCCCCEEECCCCC--------CCccChhhcccccCCC
Confidence 8888777 6666667777788888887775 333334556667777777777654 5 555 456667777
Q ss_pred EEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCC
Q 035853 452 ELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMF 508 (581)
Q Consensus 452 ~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 508 (581)
.|++++|.++......+..+++|+.|++++|.+.. ++......++|+.|++.+|+
T Consensus 152 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~--ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT--IPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCCCSEEECCSCC
T ss_pred EEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc--cChhhcccccCCeEEeCCCC
Confidence 77777776655444455667777777777666542 23344455667777776654
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.5e-19 Score=195.18 Aligned_cols=324 Identities=15% Similarity=0.112 Sum_probs=198.3
Q ss_pred CCCeeEEEEEecccCC-Cccccc---CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCccccc-----
Q 035853 222 LEDFKRISVCRTVTNF-DSWEHF---DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDE----- 292 (581)
Q Consensus 222 ~~~~r~lsl~~~~~~~-~~~~~~---~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~----- 292 (581)
....+++.+. ..... ..+..+ +++|++|.+.++..... ..+ ...+.++++|++|++++|.++.
T Consensus 104 ~~~L~~L~L~-~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~----~~l---~~~~~~~~~L~~L~L~~~~i~~~~~~~ 175 (594)
T 2p1m_B 104 YTWLEEIRLK-RMVVTDDCLELIAKSFKNFKVLVLSSCEGFST----DGL---AAIAATCRNLKELDLRESDVDDVSGHW 175 (594)
T ss_dssp CTTCCEEEEE-SCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH----HHH---HHHHHHCTTCCEEECTTCEEECCCGGG
T ss_pred CCCCCeEEee-CcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH----HHH---HHHHHhCCCCCEEeCcCCccCCcchHH
Confidence 3467888888 43322 122222 78999999988743220 123 4666789999999999998652
Q ss_pred CCCcccCcCCCcEEeccCCC--Cc--ccChhhhcccCCcEEEecCC-cccccchhhhcCCCCcEeecCCccc--------
Q 035853 293 YPAGINPLLLLKYLVLNIPS--LK--HLPSSLCNLLSLHTLDMRWS-YIHHTPDEIWKMNELRHLNFGSITL-------- 359 (581)
Q Consensus 293 lp~~i~~l~~Lr~L~L~~~~--i~--~lp~~i~~L~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~-------- 359 (581)
++.....+++|++|++++|. +. .++..+.++++|++|++++| .+..+|..+.++++|++|+++.+..
T Consensus 176 l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 255 (594)
T 2p1m_B 176 LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS 255 (594)
T ss_dssp GGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH
T ss_pred HHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH
Confidence 33334467899999999886 32 33334466799999999998 7777888888888899888655421
Q ss_pred ------------------C----CCCCCccCCCCCCcEeceecCC---CcchhhhCCCCCCCeEEEeeecccchhchhhh
Q 035853 360 ------------------P----AHPGKCCSSLENLNFISVLHPS---SCTQDILGRLPSLQTFRVHENLSSYQSMLSNN 414 (581)
Q Consensus 360 ------------------~----~~~p~~i~~l~~L~~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~ 414 (581)
. ..++..+..+++|++|++.+|. ......+..+++|+.|++++|. ....++..
T Consensus 256 ~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~--~~~~l~~l 333 (594)
T 2p1m_B 256 GLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYI--EDAGLEVL 333 (594)
T ss_dssp HHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGG--HHHHHHHH
T ss_pred HHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCcc--CHHHHHHH
Confidence 0 0122222356788888888776 2233346678888888888873 33344444
Q ss_pred cCCCCCCCEEEeec--------CCcc-------------cCCcccc---cCC-----CC-CCCCCccEEEEe--e---c-
Q 035853 415 LCPLLHLESLKLVD--------ERTI-------------ALQPSSI---VLP-----EY-QFPPRLIELSLS--N---T- 458 (581)
Q Consensus 415 l~~~~~L~~L~l~~--------~~~i-------------~L~~l~l---~lp-----~~-~~l~~L~~L~L~--~---~- 458 (581)
...+++|+.|++.. +..+ +|+.+.+ .+. .+ ..+++|++|+++ + |
T Consensus 334 ~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~ 413 (594)
T 2p1m_B 334 ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPD 413 (594)
T ss_dssp HHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCC
T ss_pred HHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcc
Confidence 44577888888833 1111 1111111 110 11 135666666666 2 2
Q ss_pred cCCCCCc-----ccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccC-cccccccceEeeccCc
Q 035853 459 ELKYDPM-----PALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTME-NDAMPKLESLIINPCA 532 (581)
Q Consensus 459 ~l~~~~~-----~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~ 532 (581)
.++.... ..+..+++|+.|++++ .+.+..+......+++|+.|++++|......... ...+|+|+.|++++|+
T Consensus 414 ~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~ 492 (594)
T 2p1m_B 414 YLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP 492 (594)
T ss_dssp TTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCS
T ss_pred cccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCC
Confidence 2221111 1144566777777754 3333322221223788999999887532222222 2568999999999998
Q ss_pred CCCC-CcccccCCCCccEEEeeCCC
Q 035853 533 YLKI-LPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 533 ~l~~-lp~~l~~l~~L~~L~l~~c~ 556 (581)
.... ++.....+++|++|++++|+
T Consensus 493 ~~~~~~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 493 FGDKALLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp CCHHHHHHTGGGGGGSSEEEEESSC
T ss_pred CcHHHHHHHHHhCCCCCEEeeeCCC
Confidence 6322 22345668999999999998
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-19 Score=183.51 Aligned_cols=240 Identities=15% Similarity=0.139 Sum_probs=182.1
Q ss_pred CCcEEeccCCCCcccChhhhcc--cCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCC-CCCccCCCCCCcEece
Q 035853 302 LLKYLVLNIPSLKHLPSSLCNL--LSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAH-PGKCCSSLENLNFISV 378 (581)
Q Consensus 302 ~Lr~L~L~~~~i~~lp~~i~~L--~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~-~p~~i~~l~~L~~L~l 378 (581)
.++.++++++.+. |..+..+ ++++.|+++++.+...+..+..+++|++|++++|.+... +|..+..+++|++|++
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 4789999998876 5667777 899999999998877777788899999999999988654 7777899999999999
Q ss_pred ecCC--CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecC-CcccCCcccc---cCC-CCCCCC-Cc
Q 035853 379 LHPS--SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDE-RTIALQPSSI---VLP-EYQFPP-RL 450 (581)
Q Consensus 379 ~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~-~~i~L~~l~l---~lp-~~~~l~-~L 450 (581)
.++. ...+..++.+++|+.|++++|.......++..+..+++|++|+++++ . + .+| .+..++ +|
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~--------l~~~~~~~~~~~l~~~L 197 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD--------FTEKHVQVAVAHVSETI 197 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTT--------CCHHHHHHHHHHSCTTC
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCC--------cChHHHHHHHHhcccCC
Confidence 9987 46677888999999999999841222246777888899999999986 4 4 255 567788 99
Q ss_pred cEEEEeec--cCC-CCCcccccCCCCCCeEEEecCc-ccCceeeeCCCCCCCCcEEEecCCCccccc-ccCcccccccce
Q 035853 451 IELSLSNT--ELK-YDPMPALEKLPHLRVLKLKKNS-FFGRKLVCSSGGFPSLKVMHLKSMFWLEEW-TMENDAMPKLES 525 (581)
Q Consensus 451 ~~L~L~~~--~l~-~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~ 525 (581)
++|++++| .++ ...+..++.+++|++|++++|. +.+.. +..+..+++|++|++++|..+... ...+..+|+|+.
T Consensus 198 ~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 276 (336)
T 2ast_B 198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC-FQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT 276 (336)
T ss_dssp CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG-GGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHH-HHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCE
Confidence 99999998 444 2344567789999999999888 44443 335677899999999998643322 224678999999
Q ss_pred EeeccCcCCCCCcccccCC-CCccEEEeeCCC
Q 035853 526 LIINPCAYLKILPEELWRI-KSLTKLELWWPR 556 (581)
Q Consensus 526 L~l~~c~~l~~lp~~l~~l-~~L~~L~l~~c~ 556 (581)
|++++| +.. .++..+ .+|+.|++++|.
T Consensus 277 L~l~~~--i~~--~~~~~l~~~l~~L~l~~n~ 304 (336)
T 2ast_B 277 LQVFGI--VPD--GTLQLLKEALPHLQINCSH 304 (336)
T ss_dssp EECTTS--SCT--TCHHHHHHHSTTSEESCCC
T ss_pred EeccCc--cCH--HHHHHHHhhCcceEEeccc
Confidence 999999 211 122222 235556676654
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-17 Score=166.19 Aligned_cols=191 Identities=19% Similarity=0.232 Sum_probs=156.3
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcc
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNL 323 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L 323 (581)
+++++.|.+.++.... .+.+..+++|++|++++|.++.++. +..+++|++|++++|.++.+| .++.+
T Consensus 40 l~~L~~L~l~~~~i~~-----------l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l 106 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-----------IEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGL 106 (308)
T ss_dssp HHTCCEEECTTSCCCC-----------CTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTC
T ss_pred cCCcCEEEeeCCCccC-----------chhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCC
Confidence 6788888888876643 2457789999999999999887776 889999999999999998876 68899
Q ss_pred cCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEEEee
Q 035853 324 LSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFRVHE 402 (581)
Q Consensus 324 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~ 402 (581)
++|++|++++|.+..+|. +..+++|++|++++|.+.+ ++. ++.+++|+.|++.++. ...+. +..+++|+.|++++
T Consensus 107 ~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~ 182 (308)
T 1h6u_A 107 QSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADD 182 (308)
T ss_dssp TTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred CCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCC
Confidence 999999999998888876 8889999999999998874 333 8889999999999888 44444 88999999999999
Q ss_pred ecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCCCCCCCCCccEEEEeeccCCCC
Q 035853 403 NLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLPEYQFPPRLIELSLSNTELKYD 463 (581)
Q Consensus 403 ~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp~~~~l~~L~~L~L~~~~l~~~ 463 (581)
+. . ..++. +..+++|+.|+++++. + .+|.+..+++|+.|++++|.++..
T Consensus 183 n~--l-~~~~~-l~~l~~L~~L~L~~N~--------l~~~~~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 183 NK--I-SDISP-LASLPNLIEVHLKNNQ--------ISDVSPLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp SC--C-CCCGG-GGGCTTCCEEECTTSC--------CCBCGGGTTCTTCCEEEEEEEEEECC
T ss_pred Cc--c-CcChh-hcCCCCCCEEEccCCc--------cCccccccCCCCCCEEEccCCeeecC
Confidence 85 3 23333 6788999999999865 5 555567899999999999987653
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.73 E-value=8.9e-20 Score=187.70 Aligned_cols=237 Identities=19% Similarity=0.113 Sum_probs=140.9
Q ss_pred HHHhccCCceeEEEecCcccc-c----CCCcccCcCCCcEEeccCCCCc----ccChhh-------hcccCCcEEEecCC
Q 035853 271 NAICKWFKFLRLLDLGTIVLD-E----YPAGINPLLLLKYLVLNIPSLK----HLPSSL-------CNLLSLHTLDMRWS 334 (581)
Q Consensus 271 ~~~~~~~~~Lr~L~L~~~~l~-~----lp~~i~~l~~Lr~L~L~~~~i~----~lp~~i-------~~L~~L~~L~l~~~ 334 (581)
...+..+++|++|+|++|.+. . ++..+..+++|++|+|++|.+. .+|..+ ..+++|++|++++|
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 456777888888888888876 2 3445677888888888886544 344444 57788888888888
Q ss_pred cccc-----cchhhhcCCCCcEeecCCcccCCCCCCc----cCCC---------CCCcEeceecCC-C--cch---hhhC
Q 035853 335 YIHH-----TPDEIWKMNELRHLNFGSITLPAHPGKC----CSSL---------ENLNFISVLHPS-S--CTQ---DILG 390 (581)
Q Consensus 335 ~l~~-----lp~~i~~l~~L~~L~l~~~~~~~~~p~~----i~~l---------~~L~~L~l~~~~-~--~~~---~~l~ 390 (581)
.+.. +|..+.++++|++|++++|.+....+.. +..+ ++|++|++.++. . ..+ ..+.
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 184 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence 6655 6777777888888888887764322222 2222 455555555544 1 111 2333
Q ss_pred CCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc--cCC-CCCCCCCccEEEEeeccCC----CC
Q 035853 391 RLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI--VLP-EYQFPPRLIELSLSNTELK----YD 463 (581)
Q Consensus 391 ~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l--~lp-~~~~l~~L~~L~L~~~~l~----~~ 463 (581)
.+++|+.|++++|. ....- + -+| ++..+++|++|+|++|.++ ..
T Consensus 185 ~~~~L~~L~L~~n~--l~~~g---------------------------~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~ 235 (386)
T 2ca6_A 185 SHRLLHTVKMVQNG--IRPEG---------------------------IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA 235 (386)
T ss_dssp HCTTCCEEECCSSC--CCHHH---------------------------HHHHHHTTGGGCTTCCEEECCSSCCHHHHHHH
T ss_pred hCCCcCEEECcCCC--CCHhH---------------------------HHHHHHHHhhcCCCccEEECcCCCCCcHHHHH
Confidence 44455555555443 11000 0 122 3445566666666666653 23
Q ss_pred CcccccCCCCCCeEEEecCcccCce---eeeCC--CCCCCCcEEEecCCCcccc-----cccCc-ccccccceEeeccCc
Q 035853 464 PMPALEKLPHLRVLKLKKNSFFGRK---LVCSS--GGFPSLKVMHLKSMFWLEE-----WTMEN-DAMPKLESLIINPCA 532 (581)
Q Consensus 464 ~~~~l~~l~~L~~L~L~~~~~~~~~---~~~~~--~~~~~L~~L~l~~~~~l~~-----l~~~~-~~l~~L~~L~l~~c~ 532 (581)
.+..+..+++|++|+|++|.+.+.. ++..+ +.+++|+.|++++|. +.. +|..+ .++|+|++|++++|+
T Consensus 236 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 236 LAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 4455667777777777777665431 11122 346777777777774 443 56555 457888888888877
Q ss_pred CCCCC
Q 035853 533 YLKIL 537 (581)
Q Consensus 533 ~l~~l 537 (581)
.....
T Consensus 315 l~~~~ 319 (386)
T 2ca6_A 315 FSEED 319 (386)
T ss_dssp SCTTS
T ss_pred CCcch
Confidence 55443
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-17 Score=158.47 Aligned_cols=214 Identities=16% Similarity=0.207 Sum_probs=148.3
Q ss_pred EEeccCCCCcccChhhhcccCCcEEEecCCcccccch-hhhcCCCCcEeecCCcc-cCCCCCCccCCCCCCcEeceec-C
Q 035853 305 YLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPD-EIWKMNELRHLNFGSIT-LPAHPGKCCSSLENLNFISVLH-P 381 (581)
Q Consensus 305 ~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~-~~~~~p~~i~~l~~L~~L~l~~-~ 381 (581)
.+.+....++.+|. +. .+|++|++++|.+..+|. .+..+++|++|++++|. +....+..++++++|++|++.+ +
T Consensus 15 ~~~v~c~~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n 91 (239)
T 2xwt_C 15 DFRVTCKDIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91 (239)
T ss_dssp TTEEEECSCSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET
T ss_pred cceeEccCccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC
Confidence 33434444778887 43 489999999999988887 57889999999999997 6533344677888888888887 5
Q ss_pred C-Ccch-hhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccccCCCCCCCCCccEEEEeec-
Q 035853 382 S-SCTQ-DILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVLPEYQFPPRLIELSLSNT- 458 (581)
Q Consensus 382 ~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l~lp~~~~l~~L~~L~L~~~- 458 (581)
. ..++ ..+..+++|+.|+++++. . ..+|. +..+++| ..|++|++++|
T Consensus 92 ~l~~i~~~~f~~l~~L~~L~l~~n~--l-~~lp~-~~~l~~L--------------------------~~L~~L~l~~N~ 141 (239)
T 2xwt_C 92 NLTYIDPDALKELPLLKFLGIFNTG--L-KMFPD-LTKVYST--------------------------DIFFILEITDNP 141 (239)
T ss_dssp TCCEECTTSEECCTTCCEEEEEEEC--C-CSCCC-CTTCCBC--------------------------CSEEEEEEESCT
T ss_pred CeeEcCHHHhCCCCCCCEEeCCCCC--C-ccccc-ccccccc--------------------------ccccEEECCCCc
Confidence 5 4433 356677788888887774 1 22332 2222222 22337777777
Q ss_pred cCCCCCcccccCCCCCC-eEEEecCcccCceeeeCCCCCCCCcEEEecCCCccccccc-Ccccc-cccceEeeccCcCCC
Q 035853 459 ELKYDPMPALEKLPHLR-VLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTM-ENDAM-PKLESLIINPCAYLK 535 (581)
Q Consensus 459 ~l~~~~~~~l~~l~~L~-~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l-~~L~~L~l~~c~~l~ 535 (581)
.+.......++.+++|+ .|++++|.+. ......+.. ++|+.|++++|+.++.++. .+..+ ++|+.|++++|+ +.
T Consensus 142 ~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~ 218 (239)
T 2xwt_C 142 YMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VT 218 (239)
T ss_dssp TCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CC
T ss_pred chhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-cc
Confidence 66554445577888888 8888877765 222222333 7899999998866777754 46778 999999999976 56
Q ss_pred CCcccccCCCCccEEEeeCCC
Q 035853 536 ILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 536 ~lp~~l~~l~~L~~L~l~~c~ 556 (581)
.+|.. .+++|+.|++.++.
T Consensus 219 ~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 219 ALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CCCCT--TCTTCSEEECTTC-
T ss_pred cCChh--HhccCceeeccCcc
Confidence 77765 68899999998876
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.72 E-value=6.4e-17 Score=163.85 Aligned_cols=233 Identities=14% Similarity=0.136 Sum_probs=156.3
Q ss_pred eEEEecCcccccCCCcccCcCCCcEEeccCCCCcccCh-hhhcccCCcEEEecCCcc-cccchh-hhcCCCCcE-eecCC
Q 035853 281 RLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPS-SLCNLLSLHTLDMRWSYI-HHTPDE-IWKMNELRH-LNFGS 356 (581)
Q Consensus 281 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~l-~~lp~~-i~~l~~L~~-L~l~~ 356 (581)
++++.++++++++|..+. +++++|+|++|+|+.+|+ .++++++|++|+|++|.+ +.+|.+ +..+++|+. +.+++
T Consensus 12 ~~v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 677888888888888774 588999999999998886 478899999999999865 556654 567888765 44555
Q ss_pred cccCCCCCCccCCCCCCcEeceecCC-Ccchh-hhCCCCCCCeEEEeeecccchhchhh-hcCCC-CCCCEEEeecCCcc
Q 035853 357 ITLPAHPGKCCSSLENLNFISVLHPS-SCTQD-ILGRLPSLQTFRVHENLSSYQSMLSN-NLCPL-LHLESLKLVDERTI 432 (581)
Q Consensus 357 ~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~l~~-~l~~~-~~L~~L~l~~~~~i 432 (581)
|.+....|..+..+++|+.|++.++. ...+. ......++..|++.++. ....++. .+..+ ..++.|++++++
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~--~i~~l~~~~f~~~~~~l~~L~L~~N~-- 165 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI--NIHTIERNSFVGLSFESVILWLNKNG-- 165 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCT--TCCEECTTSSTTSBSSCEEEECCSSC--
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccc--ccccccccchhhcchhhhhhcccccc--
Confidence 66665556677888888888888877 33322 23344556667776654 3333332 33333 356777777755
Q ss_pred cCCcccc-cCC-CCCCCCCccEEEEeec-cCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCc
Q 035853 433 ALQPSSI-VLP-EYQFPPRLIELSLSNT-ELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFW 509 (581)
Q Consensus 433 ~L~~l~l-~lp-~~~~l~~L~~L~L~~~-~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 509 (581)
+ .+| ......+|++|.+.++ .++.-....++.+++|++|++++|.+.... ...|.+|+.|.+.++.+
T Consensus 166 ------i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp----~~~~~~L~~L~~l~~~~ 235 (350)
T 4ay9_X 166 ------IQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP----SYGLENLKKLRARSTYN 235 (350)
T ss_dssp ------CCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCC----SSSCTTCCEEECTTCTT
T ss_pred ------ccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccC----hhhhccchHhhhccCCC
Confidence 6 666 4445567777777653 433333345677777888888777664322 24567777777777777
Q ss_pred ccccccCcccccccceEeecc
Q 035853 510 LEEWTMENDAMPKLESLIINP 530 (581)
Q Consensus 510 l~~l~~~~~~l~~L~~L~l~~ 530 (581)
++.+|. +..+++|+.+++.+
T Consensus 236 l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 236 LKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp CCCCCC-TTTCCSCCEEECSC
T ss_pred cCcCCC-chhCcChhhCcCCC
Confidence 777774 66777777777754
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.71 E-value=2.2e-19 Score=184.76 Aligned_cols=251 Identities=17% Similarity=0.145 Sum_probs=152.8
Q ss_pred eeEEEecCcccccCCCcccCcCCCcEEeccCCCCcc-----cChhhhcccCCcEEEecCCccc----ccchhh-------
Q 035853 280 LRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKH-----LPSSLCNLLSLHTLDMRWSYIH----HTPDEI------- 343 (581)
Q Consensus 280 Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~-----lp~~i~~L~~L~~L~l~~~~l~----~lp~~i------- 343 (581)
|+...+....+..++..+..+++|++|++++|.+.. ++..+.++++|++|++++|.+. .+|.++
T Consensus 11 L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l 90 (386)
T 2ca6_A 11 LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQAL 90 (386)
T ss_dssp CEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHH
Confidence 333333333444566666667777777777776652 3344556777777777776443 334433
Q ss_pred hcCCCCcEeecCCcccCC----CCCCccCCCCCCcEeceecCC--CcchhhhCCCCCCCeEEEeeecccchhchhhhcCC
Q 035853 344 WKMNELRHLNFGSITLPA----HPGKCCSSLENLNFISVLHPS--SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCP 417 (581)
Q Consensus 344 ~~l~~L~~L~l~~~~~~~----~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~ 417 (581)
..+++|++|++++|.+.. .+|..+..+++|++|++.+|. ...+ ..++..+..
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~----------------------~~l~~~l~~ 148 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG----------------------AKIARALQE 148 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH----------------------HHHHHHHHH
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHH----------------------HHHHHHHHH
Confidence 466677777777766654 233344455555555555544 1001 111222222
Q ss_pred C---------CCCCEEEeecCCcccCCcccc-cCC-CCCCCCCccEEEEeeccCCCC----Ccc-cccCCCCCCeEEEec
Q 035853 418 L---------LHLESLKLVDERTIALQPSSI-VLP-EYQFPPRLIELSLSNTELKYD----PMP-ALEKLPHLRVLKLKK 481 (581)
Q Consensus 418 ~---------~~L~~L~l~~~~~i~L~~l~l-~lp-~~~~l~~L~~L~L~~~~l~~~----~~~-~l~~l~~L~~L~L~~ 481 (581)
+ ++|+.|+++++. +....+ .+. .+..+++|++|++++|.+... ..+ .+..+++|++|+|++
T Consensus 149 l~~~~~~~~~~~L~~L~L~~n~---l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~ 225 (386)
T 2ca6_A 149 LAVNKKAKNAPPLRSIICGRNR---LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQD 225 (386)
T ss_dssp HHHHHHHHTCCCCCEEECCSSC---CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCS
T ss_pred HhhhhhcccCCCCcEEECCCCC---CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcC
Confidence 2 455555555432 000000 111 233566788888888876532 233 788999999999999
Q ss_pred CcccC---ceeeeCCCCCCCCcEEEecCCCcccc-----cccCc--ccccccceEeeccCcCCC----CCcccc-cCCCC
Q 035853 482 NSFFG---RKLVCSSGGFPSLKVMHLKSMFWLEE-----WTMEN--DAMPKLESLIINPCAYLK----ILPEEL-WRIKS 546 (581)
Q Consensus 482 ~~~~~---~~~~~~~~~~~~L~~L~l~~~~~l~~-----l~~~~--~~l~~L~~L~l~~c~~l~----~lp~~l-~~l~~ 546 (581)
|.+.. ..++..+..+++|+.|++++|. +.. ++..+ +.+++|+.|++++|.... .+|..+ .++++
T Consensus 226 n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~ 304 (386)
T 2ca6_A 226 NTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 304 (386)
T ss_dssp SCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTT
T ss_pred CCCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCC
Confidence 98753 2234456788999999999985 443 34444 448999999999998554 388877 66899
Q ss_pred ccEEEeeCCC
Q 035853 547 LTKLELWWPR 556 (581)
Q Consensus 547 L~~L~l~~c~ 556 (581)
|++|++++|+
T Consensus 305 L~~L~l~~N~ 314 (386)
T 2ca6_A 305 LLFLELNGNR 314 (386)
T ss_dssp CCEEECTTSB
T ss_pred ceEEEccCCc
Confidence 9999999987
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.9e-17 Score=162.56 Aligned_cols=178 Identities=11% Similarity=0.028 Sum_probs=113.2
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccc-cCCCcc--cCcCCCcEEeccCCCCcc-cC--
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLD-EYPAGI--NPLLLLKYLVLNIPSLKH-LP-- 317 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~-~lp~~i--~~l~~Lr~L~L~~~~i~~-lp-- 317 (581)
...++.+.+.+..... ..... ...+..+++|+.|++++|.+. ..|..+ +.+++|++|++++|.+.. .|
T Consensus 63 ~~~l~~l~l~~~~~~~-----~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~ 136 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPA-----QLLVG-ALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWL 136 (310)
T ss_dssp SCCCCEEEECSCCCBH-----HHHHH-HHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSH
T ss_pred hcceeEEEEeCCcCCH-----HHHHH-HHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhh
Confidence 4456677766654422 11100 112234466999999999987 666666 888999999999998873 23
Q ss_pred --hhhhcccCCcEEEecCCcccccc-hhhhcCCCCcEeecCCcccCCC--C--CCccCCCCCCcEeceecCC-Ccchh--
Q 035853 318 --SSLCNLLSLHTLDMRWSYIHHTP-DEIWKMNELRHLNFGSITLPAH--P--GKCCSSLENLNFISVLHPS-SCTQD-- 387 (581)
Q Consensus 318 --~~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~--~--p~~i~~l~~L~~L~l~~~~-~~~~~-- 387 (581)
..+..+++|++|++++|.+..+| ..++.+++|++|++++|.+.+. + +..++.+++|++|++.+|. ...+.
T Consensus 137 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 216 (310)
T 4glp_A 137 AELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVC 216 (310)
T ss_dssp HHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHH
T ss_pred HHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHH
Confidence 34456889999999998887766 4577888999999998876431 2 2234677788888887776 33332
Q ss_pred --hhCCCCCCCeEEEeeecccchhchhhhcCCC---CCCCEEEeecC
Q 035853 388 --ILGRLPSLQTFRVHENLSSYQSMLSNNLCPL---LHLESLKLVDE 429 (581)
Q Consensus 388 --~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~---~~L~~L~l~~~ 429 (581)
.++.+++|+.|++++|. .....|..+..+ ++|+.|+++++
T Consensus 217 ~~l~~~l~~L~~L~Ls~N~--l~~~~p~~~~~~~~~~~L~~L~Ls~N 261 (310)
T 4glp_A 217 AALAAAGVQPHSLDLSHNS--LRATVNPSAPRCMWSSALNSLNLSFA 261 (310)
T ss_dssp HHHHHHTCCCSSEECTTSC--CCCCCCSCCSSCCCCTTCCCEECCSS
T ss_pred HHHHhcCCCCCEEECCCCC--CCccchhhHHhccCcCcCCEEECCCC
Confidence 13566777777777764 333334444333 34444444443
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-16 Score=162.24 Aligned_cols=235 Identities=14% Similarity=0.126 Sum_probs=143.2
Q ss_pred cEEeccCCCCcccChhhhcccCCcEEEecCCcccccchh-hhcCCCCcEeecCCcccCCCCCC-ccCCCCCCcEeceec-
Q 035853 304 KYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDE-IWKMNELRHLNFGSITLPAHPGK-CCSSLENLNFISVLH- 380 (581)
Q Consensus 304 r~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~- 380 (581)
+.++.++++++++|..+ ..++++|+|++|.++.+|.+ +..+++|++|++++|.+.+.+|. .+.++++++++....
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 55666777777777665 35677777777777777754 56777777777777776555553 356677766544333
Q ss_pred CC-Ccc-hhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC--CCCCC-CCccEEE
Q 035853 381 PS-SCT-QDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP--EYQFP-PRLIELS 454 (581)
Q Consensus 381 ~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp--~~~~l-~~L~~L~ 454 (581)
+. ..+ +..+..+++|+.|+++++. .....+..+....++..|++..... + .+| .+..+ ..++.|+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~--l~~~~~~~~~~~~~l~~l~l~~~~~-------i~~l~~~~f~~~~~~l~~L~ 160 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTG--IKHLPDVHKIHSLQKVLLDIQDNIN-------IHTIERNSFVGLSFESVILW 160 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEEC--CSSCCCCTTCCBSSCEEEEEESCTT-------CCEECTTSSTTSBSSCEEEE
T ss_pred CcccccCchhhhhccccccccccccc--cccCCchhhcccchhhhhhhccccc-------cccccccchhhcchhhhhhc
Confidence 33 333 3456677777777777774 3222223333444555666654211 3 444 33333 3567777
Q ss_pred EeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccCcccccccceEeeccCcCC
Q 035853 455 LSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYL 534 (581)
Q Consensus 455 L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l 534 (581)
+++|.++. .++.....++|+.|.+.+++.........+.++++|+.|++++| .++.+|. +.+.+|+.|.+.+|..+
T Consensus 161 L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~--~~~~~L~~L~~l~~~~l 236 (350)
T 4ay9_X 161 LNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPS--YGLENLKKLRARSTYNL 236 (350)
T ss_dssp CCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCS--SSCTTCCEEECTTCTTC
T ss_pred cccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccCh--hhhccchHhhhccCCCc
Confidence 77776643 33333345667777776554444443344566777777777776 5666664 34667777777777777
Q ss_pred CCCcccccCCCCccEEEeeC
Q 035853 535 KILPEELWRIKSLTKLELWW 554 (581)
Q Consensus 535 ~~lp~~l~~l~~L~~L~l~~ 554 (581)
+.+| .+..+++|+.+++.+
T Consensus 237 ~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 237 KKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp CCCC-CTTTCCSCCEEECSC
T ss_pred CcCC-CchhCcChhhCcCCC
Confidence 7777 366777777777754
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2.9e-16 Score=151.19 Aligned_cols=173 Identities=23% Similarity=0.304 Sum_probs=119.5
Q ss_pred CceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccC-hhhhcccCCcEEEecCCcccccchh-hhcCCCCcEeecC
Q 035853 278 KFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLP-SSLCNLLSLHTLDMRWSYIHHTPDE-IWKMNELRHLNFG 355 (581)
Q Consensus 278 ~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~ 355 (581)
...++++++++.++.+|..+. .+|++|++++|.+..++ ..++++++|++|++++|.+..++.. +..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 457889999999999988776 58999999999988665 4688899999999999988777654 6889999999999
Q ss_pred CcccCCCCCCccCCCCCCcEeceecCC-Ccchh-hhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCccc
Q 035853 356 SITLPAHPGKCCSSLENLNFISVLHPS-SCTQD-ILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIA 433 (581)
Q Consensus 356 ~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~ 433 (581)
+|.+....+..++.+++|++|++.++. ..++. .+..+++|+.|+++++. ..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~--l~------------------------- 144 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ--LQ------------------------- 144 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CC-------------------------
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc--CC-------------------------
Confidence 998875555556777777777766665 33332 23455555555555553 11
Q ss_pred CCcccccCC--CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCccc
Q 035853 434 LQPSSIVLP--EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFF 485 (581)
Q Consensus 434 L~~l~l~lp--~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~ 485 (581)
.+| .+..+++|++|+|++|.+....+..+..+++|+.|++++|.+.
T Consensus 145 ------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 145 ------SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp ------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred ------ccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 233 3445556666666666655444445666666666666666543
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.69 E-value=8.2e-19 Score=191.08 Aligned_cols=302 Identities=15% Similarity=0.080 Sum_probs=182.7
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcc-cc--cCCCcccCcCCCcEEeccCCCCcc-----
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIV-LD--EYPAGINPLLLLKYLVLNIPSLKH----- 315 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~-l~--~lp~~i~~l~~Lr~L~L~~~~i~~----- 315 (581)
+++|+.|.+.++.... ..+ ......+++|++|++++|. ++ .++..+.++++|++|++++|.++.
T Consensus 104 ~~~L~~L~L~~~~~~~-----~~~---~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~ 175 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTD-----DCL---ELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHW 175 (594)
T ss_dssp CTTCCEEEEESCBCCH-----HHH---HHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGG
T ss_pred CCCCCeEEeeCcEEcH-----HHH---HHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHH
Confidence 7899999999886532 222 2333478999999999994 55 255555689999999999998653
Q ss_pred cChhhhcccCCcEEEecCCc--c--cccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC---------
Q 035853 316 LPSSLCNLLSLHTLDMRWSY--I--HHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS--------- 382 (581)
Q Consensus 316 lp~~i~~L~~L~~L~l~~~~--l--~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~--------- 382 (581)
++.....+++|++|++++|. + ..++.-+..+++|++|++++|.....+|..+..+++|+.|++..+.
T Consensus 176 l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 255 (594)
T 2p1m_B 176 LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS 255 (594)
T ss_dssp GGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH
T ss_pred HHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH
Confidence 33333467899999999985 2 2233334568999999999984333355556666777777643321
Q ss_pred -----------------------CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCC---cc----
Q 035853 383 -----------------------SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDER---TI---- 432 (581)
Q Consensus 383 -----------------------~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~---~i---- 432 (581)
..++..+..+++|+.|++++|. .....+...+..+++|+.|+++++- .+
T Consensus 256 ~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~ 334 (594)
T 2p1m_B 256 GLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLA 334 (594)
T ss_dssp HHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHH
T ss_pred HHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHH
Confidence 2233333456788888888886 2223344556778889999988731 00
Q ss_pred ----cCCcccc-cC------C--C---------CCCCCCccEEEEeeccCCCCCccccc-CCCCCCeEEEe--c----Cc
Q 035853 433 ----ALQPSSI-VL------P--E---------YQFPPRLIELSLSNTELKYDPMPALE-KLPHLRVLKLK--K----NS 483 (581)
Q Consensus 433 ----~L~~l~l-~l------p--~---------~~~l~~L~~L~L~~~~l~~~~~~~l~-~l~~L~~L~L~--~----~~ 483 (581)
+|+.+.+ .. . . ...+++|++|.+..+.++...+..++ .+|+|+.|+++ + +.
T Consensus 335 ~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~ 414 (594)
T 2p1m_B 335 STCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDY 414 (594)
T ss_dssp HHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCT
T ss_pred HhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccc
Confidence 1222111 00 0 0 01255666665555554443333333 46677777776 2 22
Q ss_pred ccC----ceeeeCCCCCCCCcEEEecCCCccccc-ccCcc-cccccceEeeccCcCCCCCcccc-cCCCCccEEEeeCCC
Q 035853 484 FFG----RKLVCSSGGFPSLKVMHLKSMFWLEEW-TMEND-AMPKLESLIINPCAYLKILPEEL-WRIKSLTKLELWWPR 556 (581)
Q Consensus 484 ~~~----~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~-~l~~L~~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~c~ 556 (581)
+.. ..+......+++|+.|++++ .+... +..+. .+++|+.|++++|......+..+ ..+++|++|++++|+
T Consensus 415 l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~ 492 (594)
T 2p1m_B 415 LTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP 492 (594)
T ss_dssp TTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCS
T ss_pred ccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCC
Confidence 221 11111134466777777755 22221 11222 37889999998887433222222 668999999999998
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.8e-18 Score=173.04 Aligned_cols=228 Identities=15% Similarity=0.169 Sum_probs=142.8
Q ss_pred HHHhccCCceeEEEecCcccccCC-----CcccCcC-CCcEEeccCCCCccc-Chhhhcc-----cCCcEEEecCCcccc
Q 035853 271 NAICKWFKFLRLLDLGTIVLDEYP-----AGINPLL-LLKYLVLNIPSLKHL-PSSLCNL-----LSLHTLDMRWSYIHH 338 (581)
Q Consensus 271 ~~~~~~~~~Lr~L~L~~~~l~~lp-----~~i~~l~-~Lr~L~L~~~~i~~l-p~~i~~L-----~~L~~L~l~~~~l~~ 338 (581)
+.++...++|++|++++|.++..+ ..+..++ +|++|++++|.+... +..+..+ ++|++|++++|.+..
T Consensus 15 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 94 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSY 94 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred HHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCCh
Confidence 455566666999999999988555 5667787 899999999998844 4566665 899999999998765
Q ss_pred cch-h----hhcC-CCCcEeecCCcccCCCCCCc----cCC-CCCCcEeceecCC-C-----cchhhhCCCC-CCCeEEE
Q 035853 339 TPD-E----IWKM-NELRHLNFGSITLPAHPGKC----CSS-LENLNFISVLHPS-S-----CTQDILGRLP-SLQTFRV 400 (581)
Q Consensus 339 lp~-~----i~~l-~~L~~L~l~~~~~~~~~p~~----i~~-l~~L~~L~l~~~~-~-----~~~~~l~~l~-~L~~L~l 400 (581)
.+. . +..+ ++|++|++++|.+....+.. +.. .++|++|+++++. . .++..+..++ +|+.|++
T Consensus 95 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L 174 (362)
T 3goz_A 95 KSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNL 174 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred HHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeee
Confidence 543 2 4444 78999999999886544333 333 3578888888776 2 3344445555 7888888
Q ss_pred eeecccchhc----hhhhcCCC-CCCCEEEeecCCcccCCcccc-c-----CC-CCCC-CCCccEEEEeeccCCCCCc--
Q 035853 401 HENLSSYQSM----LSNNLCPL-LHLESLKLVDERTIALQPSSI-V-----LP-EYQF-PPRLIELSLSNTELKYDPM-- 465 (581)
Q Consensus 401 ~~~~~~~~~~----l~~~l~~~-~~L~~L~l~~~~~i~L~~l~l-~-----lp-~~~~-l~~L~~L~L~~~~l~~~~~-- 465 (581)
++|. .... +...+..+ ++|+.|+++++. + . +| .+.. .++|++|++++|.++....
T Consensus 175 s~n~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~--------i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 244 (362)
T 3goz_A 175 RGNN--LASKNCAELAKFLASIPASVTSLDLSANL--------LGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLEN 244 (362)
T ss_dssp TTSC--GGGSCHHHHHHHHHTSCTTCCEEECTTSC--------GGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHH
T ss_pred cCCC--CchhhHHHHHHHHHhCCCCCCEEECCCCC--------CChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHH
Confidence 8775 3222 22334444 477777777644 3 2 33 2322 3467777777776655433
Q ss_pred --ccccCCCCCCeEEEecCcccCce------eeeCCCCCCCCcEEEecCCC
Q 035853 466 --PALEKLPHLRVLKLKKNSFFGRK------LVCSSGGFPSLKVMHLKSMF 508 (581)
Q Consensus 466 --~~l~~l~~L~~L~L~~~~~~~~~------~~~~~~~~~~L~~L~l~~~~ 508 (581)
..+..+++|+.|++++|.+.... +...+..+++|+.|+++++.
T Consensus 245 l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 245 LKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 22345566777777666532211 11233455556666666653
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-16 Score=156.86 Aligned_cols=124 Identities=18% Similarity=0.188 Sum_probs=85.1
Q ss_pred ccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeec
Q 035853 275 KWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNF 354 (581)
Q Consensus 275 ~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 354 (581)
..+++|+.|++++|.++.++ .+..+++|++|++++|.++.++. ++++++|++|++++|.+..+|. +..+++|++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEEC
T ss_pred hhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEEC
Confidence 45667777777777777665 36777777777777777776665 7777777777777777776654 777777777777
Q ss_pred CCcccCCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEEEeeec
Q 035853 355 GSITLPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFRVHENL 404 (581)
Q Consensus 355 ~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~ 404 (581)
++|.+.. + ..+..+++|+.|++.++. ... ..+..+++|+.|++++|.
T Consensus 120 ~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~ 167 (291)
T 1h6t_A 120 EHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ 167 (291)
T ss_dssp TTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC
T ss_pred CCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc
Confidence 7777653 2 356666777777766666 322 456666666666666664
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-16 Score=157.86 Aligned_cols=193 Identities=18% Similarity=0.112 Sum_probs=126.6
Q ss_pred CCCcEeecCCcccCCCCCCcc--CCCCCCcEeceecCC-Cc-c----hhhhCCCCCCCeEEEeeecccchhchhhhcCCC
Q 035853 347 NELRHLNFGSITLPAHPGKCC--SSLENLNFISVLHPS-SC-T----QDILGRLPSLQTFRVHENLSSYQSMLSNNLCPL 418 (581)
Q Consensus 347 ~~L~~L~l~~~~~~~~~p~~i--~~l~~L~~L~l~~~~-~~-~----~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~ 418 (581)
++|++|++++|.+.+..|..+ +.+++|++|++.++. .. . ...+..+++|+.|++++|. .....+..+..+
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~~~~l 168 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH--SPAFSCEQVRAF 168 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS--SCCCCTTSCCCC
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC--cchhhHHHhccC
Confidence 445555555555554444444 555555555555554 11 1 1233456677777777765 444445566677
Q ss_pred CCCCEEEeecCCcccCCcccc----cC--C-CCCCCCCccEEEEeeccCCCCCcc----cccCCCCCCeEEEecCcccCc
Q 035853 419 LHLESLKLVDERTIALQPSSI----VL--P-EYQFPPRLIELSLSNTELKYDPMP----ALEKLPHLRVLKLKKNSFFGR 487 (581)
Q Consensus 419 ~~L~~L~l~~~~~i~L~~l~l----~l--p-~~~~l~~L~~L~L~~~~l~~~~~~----~l~~l~~L~~L~L~~~~~~~~ 487 (581)
++|+.|+++++. + .+ + ++..+++|++|++++|.++. .+. .++.+++|++|++++|.+.+.
T Consensus 169 ~~L~~L~Ls~N~--------l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 239 (310)
T 4glp_A 169 PALTSLDLSDNP--------GLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRAT 239 (310)
T ss_dssp TTCCEEECCSCT--------TCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCC
T ss_pred CCCCEEECCCCC--------CccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCcc
Confidence 777777777643 2 13 2 45678888899998888742 122 246789999999998888665
Q ss_pred eeeeCCCC---CCCCcEEEecCCCcccccccCcccccccceEeeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 488 KLVCSSGG---FPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 488 ~~~~~~~~---~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
. +..+.. +++|++|++++| .++.+|..+. ++|+.|++++|. +..+|. +..+++|++|++++|+
T Consensus 240 ~-p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~--~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 240 V-NPSAPRCMWSSALNSLNLSFA-GLEQVPKGLP--AKLRVLDLSSNR-LNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp C-CSCCSSCCCCTTCCCEECCSS-CCCSCCSCCC--SCCSCEECCSCC-CCSCCC-TTSCCCCSCEECSSTT
T ss_pred c-hhhHHhccCcCcCCEEECCCC-CCCchhhhhc--CCCCEEECCCCc-CCCCch-hhhCCCccEEECcCCC
Confidence 3 222333 379999999988 5778877653 899999999986 556664 6788999999999987
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2.2e-16 Score=170.53 Aligned_cols=170 Identities=20% Similarity=0.184 Sum_probs=91.9
Q ss_pred ccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeec
Q 035853 275 KWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNF 354 (581)
Q Consensus 275 ~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 354 (581)
..+++|+.|+++++.+..+| .+..+++|++|+|++|.+..+|. ++.+++|+.|+|++|.+..+| .+..+++|++|++
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEEC
T ss_pred hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEe
Confidence 34555666666666655554 35566666666666666665554 566666666666666555554 3556666666666
Q ss_pred CCcccCCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCccc
Q 035853 355 GSITLPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIA 433 (581)
Q Consensus 355 ~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~ 433 (581)
++|.+.. + ..+..+++|+.|+++++. ..+ ..+..+++|+.|++++|. .....| +..+++|+.|+++++.
T Consensus 117 s~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~--l~~~~~--l~~l~~L~~L~Ls~N~--- 186 (605)
T 1m9s_A 117 EHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ--ISDIVP--LAGLTKLQNLYLSKNH--- 186 (605)
T ss_dssp TTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC--CCCCGG--GTTCTTCCEEECCSSC---
T ss_pred cCCCCCC-C-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc--CCCchh--hccCCCCCEEECcCCC---
Confidence 6665542 2 245555666666665555 222 445555666666666553 222222 4455555555555433
Q ss_pred CCcccc-cCCCCCCCCCccEEEEeeccCCC
Q 035853 434 LQPSSI-VLPEYQFPPRLIELSLSNTELKY 462 (581)
Q Consensus 434 L~~l~l-~lp~~~~l~~L~~L~L~~~~l~~ 462 (581)
+ .+|.+..+++|+.|+|++|.+..
T Consensus 187 -----i~~l~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 187 -----ISDLRALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp -----CCBCGGGTTCTTCSEEECCSEEEEC
T ss_pred -----CCCChHHccCCCCCEEEccCCcCcC
Confidence 3 33334445555555555554433
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.63 E-value=9e-18 Score=171.02 Aligned_cols=246 Identities=15% Similarity=0.102 Sum_probs=170.8
Q ss_pred EEEecCcccc-cCCCcccCcCCCcEEeccCCCCcccC-----hhhhccc-CCcEEEecCCccccc-chhhhcC-----CC
Q 035853 282 LLDLGTIVLD-EYPAGINPLLLLKYLVLNIPSLKHLP-----SSLCNLL-SLHTLDMRWSYIHHT-PDEIWKM-----NE 348 (581)
Q Consensus 282 ~L~L~~~~l~-~lp~~i~~l~~Lr~L~L~~~~i~~lp-----~~i~~L~-~L~~L~l~~~~l~~l-p~~i~~l-----~~ 348 (581)
.++++.+.++ .+|..+....+|++|++++|.++..+ ..+..++ +|++|++++|.+... +..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 3578888887 55555556667999999999998766 5677888 899999999988665 4455554 89
Q ss_pred CcEeecCCcccCCCCCCc----cCCC-CCCcEeceecCC--Cc----chhhhCCC-CCCCeEEEeeec--ccchhchhhh
Q 035853 349 LRHLNFGSITLPAHPGKC----CSSL-ENLNFISVLHPS--SC----TQDILGRL-PSLQTFRVHENL--SSYQSMLSNN 414 (581)
Q Consensus 349 L~~L~l~~~~~~~~~p~~----i~~l-~~L~~L~l~~~~--~~----~~~~l~~l-~~L~~L~l~~~~--~~~~~~l~~~ 414 (581)
|++|++++|.+....+.. +..+ ++|++|+++++. .. +...+..+ ++|+.|++++|. ......++..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999987655543 3344 789999999888 22 22335553 689999999886 1122355566
Q ss_pred cCCCC-CCCEEEeecCCcccCCcccc-cCC--C----CCCC-CCccEEEEeeccCCCCCc----ccccC-CCCCCeEEEe
Q 035853 415 LCPLL-HLESLKLVDERTIALQPSSI-VLP--E----YQFP-PRLIELSLSNTELKYDPM----PALEK-LPHLRVLKLK 480 (581)
Q Consensus 415 l~~~~-~L~~L~l~~~~~i~L~~l~l-~lp--~----~~~l-~~L~~L~L~~~~l~~~~~----~~l~~-l~~L~~L~L~ 480 (581)
+...+ +|+.|+++++. + ..+ . +..+ ++|++|+|++|.+..... ..+.. .++|++|+++
T Consensus 162 l~~~~~~L~~L~Ls~n~--------l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls 233 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNN--------LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLC 233 (362)
T ss_dssp HHTSCTTCCEEECTTSC--------GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECC
T ss_pred HhcCCccccEeeecCCC--------CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECc
Confidence 66665 88999888855 4 222 2 2334 588888888887765332 23444 4588888888
Q ss_pred cCcccCcee---eeCCCCCCCCcEEEecCCC-------cccccccCcccccccceEeeccCcCCC
Q 035853 481 KNSFFGRKL---VCSSGGFPSLKVMHLKSMF-------WLEEWTMENDAMPKLESLIINPCAYLK 535 (581)
Q Consensus 481 ~~~~~~~~~---~~~~~~~~~L~~L~l~~~~-------~l~~l~~~~~~l~~L~~L~l~~c~~l~ 535 (581)
+|.+.+... ......+++|+.|++++|. .+..++..+..+++|+.|++++|+.-.
T Consensus 234 ~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 234 LNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp SSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred CCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 887766432 3345677888888888874 122344556677888888888887433
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.2e-15 Score=160.88 Aligned_cols=178 Identities=20% Similarity=0.228 Sum_probs=131.7
Q ss_pred CceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCc
Q 035853 278 KFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSI 357 (581)
Q Consensus 278 ~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~ 357 (581)
.+|+.|+++++.++.+|..+. ++|++|++++|.++.+| +.+++|++|++++|.+..+|. +.. +|++|++++|
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence 389999999999998888774 78999999999999998 568999999999999988988 655 9999999999
Q ss_pred ccCCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCc
Q 035853 358 TLPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQP 436 (581)
Q Consensus 358 ~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~ 436 (581)
.+.+ +|. .+++|+.|+++++. ..++. .+++|+.|++++|. ...+|. +. ++|+.|+++++.
T Consensus 131 ~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~---L~~lp~-l~--~~L~~L~Ls~N~------ 191 (571)
T 3cvr_A 131 QLTM-LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ---LTFLPE-LP--ESLEALDVSTNL------ 191 (571)
T ss_dssp CCSC-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC---CSCCCC-CC--TTCCEEECCSSC------
T ss_pred cCCC-CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC---CCCcch-hh--CCCCEEECcCCC------
Confidence 9875 665 67889999988887 54554 56788888888884 233555 44 677777777755
Q ss_pred ccc-cCCCCCCCCCc-------cEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCc
Q 035853 437 SSI-VLPEYQFPPRL-------IELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGR 487 (581)
Q Consensus 437 l~l-~lp~~~~l~~L-------~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~ 487 (581)
+ .+|.+.. +| +.|++++|.++ ..+..+..+++|+.|++++|.+.+.
T Consensus 192 --L~~lp~~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 192 --LESLPAVPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp --CSSCCCCC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred --CCchhhHHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCc
Confidence 5 5553111 44 66777766654 3444555566666666666665443
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.61 E-value=4.3e-15 Score=142.95 Aligned_cols=171 Identities=20% Similarity=0.243 Sum_probs=122.8
Q ss_pred CCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccch-hhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEecee
Q 035853 301 LLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPD-EIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVL 379 (581)
Q Consensus 301 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~ 379 (581)
...++++++++.++.+|..+. .+|+.|++++|.+..++. .+..+++|++|++++|.+.+..+..+..+++|++|++.
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 467788888888888887765 688999999988877764 57888899999998888876666566777777777766
Q ss_pred cCC-Ccch-hhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC--CCCCCCCccEEE
Q 035853 380 HPS-SCTQ-DILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP--EYQFPPRLIELS 454 (581)
Q Consensus 380 ~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp--~~~~l~~L~~L~ 454 (581)
++. ..++ ..+..+++|+.|+++++ . + .+| .+..+++|++|+
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N--------------------------~--------l~~~~~~~~~~l~~L~~L~ 137 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGN--------------------------Q--------LKSLPSGVFDRLTKLKELR 137 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSS--------------------------C--------CCCCCTTTTTTCTTCCEEE
T ss_pred CCcccccChhHhcccCCCCEEEcCCC--------------------------c--------CCCcChhHhccCCcccEEE
Confidence 665 2222 23344444444444444 2 4 444 356788888888
Q ss_pred EeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCC
Q 035853 455 LSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMF 508 (581)
Q Consensus 455 L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 508 (581)
+++|.++...+..++.+++|++|++++|.+.+.. +..+..+++|+.|++++|+
T Consensus 138 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP-HGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSCC
T ss_pred CcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC-HHHHhCCCCCCEEEeeCCc
Confidence 8888887666567888899999999888776443 3456778888888888875
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.4e-15 Score=139.29 Aligned_cols=176 Identities=21% Similarity=0.207 Sum_probs=111.1
Q ss_pred eEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChh-hhcccCCcEEEecCCcccccchh-hhcCCCCcEeecCCcc
Q 035853 281 RLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSS-LCNLLSLHTLDMRWSYIHHTPDE-IWKMNELRHLNFGSIT 358 (581)
Q Consensus 281 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 358 (581)
+.++.+++.++.+|..+. ++|++|++++|.++.+|.. ++++++|++|++++|.+..+|.. +..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCCC--CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 456677777777776553 4788888888888766653 57788888888888877777765 4677888888888887
Q ss_pred cCCCCCCccCCCCCCcEeceecCC-Ccchh-hhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCc
Q 035853 359 LPAHPGKCCSSLENLNFISVLHPS-SCTQD-ILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQP 436 (581)
Q Consensus 359 ~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~ 436 (581)
+....+..++.+++|+.|++.++. ..++. .+..+++|+.|+++++. .....+..+..+++|+.|+++++.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~--l~~~~~~~~~~l~~L~~L~l~~N~------ 159 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ--LKSVPDGVFDRLTSLQYIWLHDNP------ 159 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CSCCCTTTTTTCTTCCEEECCSCC------
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc--cceeCHHHhccCCCccEEEecCCC------
Confidence 764444446777777777777766 33333 35667777777777664 322222334555555555555532
Q ss_pred ccccCCCCCCCCCccEEEEeeccCCCCCcccccCCC
Q 035853 437 SSIVLPEYQFPPRLIELSLSNTELKYDPMPALEKLP 472 (581)
Q Consensus 437 l~l~lp~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~ 472 (581)
+.+.+++|++|+++.|.+++..+..++.++
T Consensus 160 ------~~~~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 160 ------WDCTCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp ------BCCCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred ------eecCCCCHHHHHHHHHhCCceeeccCcccc
Confidence 233455555555555555555555554443
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.8e-15 Score=163.42 Aligned_cols=189 Identities=19% Similarity=0.213 Sum_probs=151.0
Q ss_pred eeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCccc
Q 035853 280 LRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITL 359 (581)
Q Consensus 280 Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~ 359 (581)
+..+.+..+.+..++ .+..+.+|++|++++|.+..+| .++.+++|+.|+|++|.+..+|. +..+++|++|++++|.+
T Consensus 23 l~~l~l~~~~i~~~~-~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKI 99 (605)
T ss_dssp HHHHHTTCSCTTSEE-CHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCC
T ss_pred HHHHhccCCCccccc-chhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCC
Confidence 444556666665443 3568899999999999999887 69999999999999999999887 89999999999999998
Q ss_pred CCCCCCccCCCCCCcEeceecCCCcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc
Q 035853 360 PAHPGKCCSSLENLNFISVLHPSSCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI 439 (581)
Q Consensus 360 ~~~~p~~i~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l 439 (581)
.. +| .++.+++|+.|+++++.-..+..+..+++|+.|++++|. ... + ..+..+++|+.|+++++. +
T Consensus 100 ~~-l~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~--l~~-l-~~l~~l~~L~~L~Ls~N~--------l 165 (605)
T 1m9s_A 100 KD-LS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNK--ITD-I-TVLSRLTKLDTLSLEDNQ--------I 165 (605)
T ss_dssp CC-CT-TSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSC--CCC-C-GGGGSCTTCSEEECCSSC--------C
T ss_pred CC-Ch-hhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCc--cCC-c-hhhcccCCCCEEECcCCc--------C
Confidence 63 44 789999999999999982224568899999999999996 322 2 567788889999988855 5
Q ss_pred -cCCCCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCc
Q 035853 440 -VLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGR 487 (581)
Q Consensus 440 -~lp~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~ 487 (581)
.++.+..+++|+.|+|++|.+.. ++.+..+++|+.|+|++|.+.+.
T Consensus 166 ~~~~~l~~l~~L~~L~Ls~N~i~~--l~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 166 SDIVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCCGGGTTCTTCCEEECCSSCCCB--CGGGTTCTTCSEEECCSEEEECC
T ss_pred CCchhhccCCCCCEEECcCCCCCC--ChHHccCCCCCEEEccCCcCcCC
Confidence 43336678888888888888754 35688888888888888777554
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.59 E-value=7.3e-15 Score=144.54 Aligned_cols=164 Identities=22% Similarity=0.232 Sum_probs=125.0
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcc
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNL 323 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L 323 (581)
+++++.|.+.++.... .+.+..+++|++|++++|.++.++. +..+++|++|++++|.++.+| .++.+
T Consensus 45 l~~L~~L~l~~~~i~~-----------~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l 111 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKS-----------VQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS-SLKDL 111 (291)
T ss_dssp HHTCCEEECTTSCCCC-----------CTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG-GGTTC
T ss_pred cCcccEEEccCCCccc-----------ChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCCh-hhccC
Confidence 6678888887776643 2447788899999999999887766 888899999999999888876 48889
Q ss_pred cCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEEEee
Q 035853 324 LSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFRVHE 402 (581)
Q Consensus 324 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~ 402 (581)
++|++|++++|.+..++ .+..+++|++|++++|.+... ..++.+++|+.|++.++. ...+. +..+++|+.|++++
T Consensus 112 ~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~ 187 (291)
T 1h6t_A 112 KKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSK 187 (291)
T ss_dssp TTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred CCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCC
Confidence 99999999999888875 488889999999999888643 578888999999998888 44444 88888888888888
Q ss_pred ecccchhchhhhcCCCCCCCEEEeec
Q 035853 403 NLSSYQSMLSNNLCPLLHLESLKLVD 428 (581)
Q Consensus 403 ~~~~~~~~l~~~l~~~~~L~~L~l~~ 428 (581)
|. ...++ .+..+++|+.|++++
T Consensus 188 N~---i~~l~-~l~~l~~L~~L~l~~ 209 (291)
T 1h6t_A 188 NH---ISDLR-ALAGLKNLDVLELFS 209 (291)
T ss_dssp SC---CCBCG-GGTTCTTCSEEEEEE
T ss_pred Cc---CCCCh-hhccCCCCCEEECcC
Confidence 85 22222 244444555554444
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.5e-15 Score=159.33 Aligned_cols=185 Identities=17% Similarity=0.148 Sum_probs=124.4
Q ss_pred CCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecC
Q 035853 302 LLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHP 381 (581)
Q Consensus 302 ~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~ 381 (581)
+|++|++++|.++.+|..+ +++|++|++++|.+..+| ..+++|++|++++|.+.+ +|. +++ +|+.|+++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCC
Confidence 8999999999999999877 488999999999999999 458899999999998875 776 554 8888888877
Q ss_pred C-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccccCCCCCCCCCccEEEEeeccC
Q 035853 382 S-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVLPEYQFPPRLIELSLSNTEL 460 (581)
Q Consensus 382 ~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l~lp~~~~l~~L~~L~L~~~~l 460 (581)
. ..++. .+++|+.|++++|. . ..+|. . +++|++|++++|.+
T Consensus 131 ~l~~lp~---~l~~L~~L~Ls~N~--l-~~lp~---~-----------------------------l~~L~~L~Ls~N~L 172 (571)
T 3cvr_A 131 QLTMLPE---LPALLEYINADNNQ--L-TMLPE---L-----------------------------PTSLEVLSVRNNQL 172 (571)
T ss_dssp CCSCCCC---CCTTCCEEECCSSC--C-SCCCC---C-----------------------------CTTCCEEECCSSCC
T ss_pred cCCCCCC---cCccccEEeCCCCc--c-CcCCC---c-----------------------------CCCcCEEECCCCCC
Confidence 7 44444 56677777777764 1 12332 2 34555555555555
Q ss_pred CCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCC-------cEEEecCCCcccccccCcccccccceEeeccCcC
Q 035853 461 KYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSL-------KVMHLKSMFWLEEWTMENDAMPKLESLIINPCAY 533 (581)
Q Consensus 461 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L-------~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~ 533 (581)
++ .+. ++ ++|+.|++++|.+... +. +.. +| +.|++++| .++.+|..+..+++|+.|++++|+.
T Consensus 173 ~~-lp~-l~--~~L~~L~Ls~N~L~~l--p~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 173 TF-LPE-LP--ESLEALDVSTNLLESL--PA-VPV--RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp SC-CCC-CC--TTCCEEECCSSCCSSC--CC-CC----------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred CC-cch-hh--CCCCEEECcCCCCCch--hh-HHH--hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcC
Confidence 44 222 33 6666666666655421 21 111 44 77777776 5666777666777777777777775
Q ss_pred CCCCcccccC
Q 035853 534 LKILPEELWR 543 (581)
Q Consensus 534 l~~lp~~l~~ 543 (581)
...+|..+..
T Consensus 243 ~~~~p~~l~~ 252 (571)
T 3cvr_A 243 SSRIRESLSQ 252 (571)
T ss_dssp CHHHHHHHHH
T ss_pred CCcCHHHHHH
Confidence 5555554443
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.8e-15 Score=138.59 Aligned_cols=152 Identities=14% Similarity=0.171 Sum_probs=93.6
Q ss_pred cCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEec
Q 035853 298 NPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFIS 377 (581)
Q Consensus 298 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 377 (581)
..+++|++|++++|.+..+| .+..+++|++|++++|.+..++ .+..+++|++|++++|.+.+..|..++.+++|+.|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 45666777777777666666 5666777777777776555554 466677777777777766555566666666666666
Q ss_pred eecCC--CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccccCCCCCCCCCccEEEE
Q 035853 378 VLHPS--SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVLPEYQFPPRLIELSL 455 (581)
Q Consensus 378 l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l~lp~~~~l~~L~~L~L 455 (581)
++++. ...+..++.+++|+.|++++|. ....++ . +..+++|++|++
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~--~i~~~~-~-----------------------------l~~l~~L~~L~l 166 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNG--AITDIM-P-----------------------------LKTLPELKSLNI 166 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCT--BCCCCG-G-----------------------------GGGCSSCCEEEC
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCC--CccccH-h-----------------------------hcCCCCCCEEEC
Confidence 66665 2345566667777777776663 122222 2 234556666666
Q ss_pred eeccCCCCCcccccCCCCCCeEEEecCccc
Q 035853 456 SNTELKYDPMPALEKLPHLRVLKLKKNSFF 485 (581)
Q Consensus 456 ~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~ 485 (581)
++|.++. .+.+..+++|+.|++++|.+.
T Consensus 167 ~~n~i~~--~~~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 167 QFDGVHD--YRGIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp TTBCCCC--CTTGGGCSSCCEEEECBC---
T ss_pred CCCCCcC--hHHhccCCCCCEEEeeCcccC
Confidence 6666543 226677788888888777653
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.7e-15 Score=144.29 Aligned_cols=169 Identities=16% Similarity=0.166 Sum_probs=110.4
Q ss_pred cCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecC
Q 035853 276 WFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFG 355 (581)
Q Consensus 276 ~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 355 (581)
.+.++..++++++.++.++ .+..+++|++|++++|.++.+| .++.+++|++|++++|.+..+|. +..+++|++|+++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC
Confidence 3455666777777777666 5777888888888888888777 67788888888888888877777 7788888888888
Q ss_pred CcccCCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccC
Q 035853 356 SITLPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIAL 434 (581)
Q Consensus 356 ~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L 434 (581)
+|.+.+ +|.. .. ++|+.|++.++. ... ..+..+++|+.|++++|. . ..++ .+.
T Consensus 94 ~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~-~~l~~l~~L~~L~Ls~N~--i-~~~~-~l~------------------ 147 (263)
T 1xeu_A 94 RNRLKN-LNGI-PS-ACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNK--L-KSIV-MLG------------------ 147 (263)
T ss_dssp SSCCSC-CTTC-CC-SSCCEEECCSSCCSBS-GGGTTCTTCCEEECTTSC--C-CBCG-GGG------------------
T ss_pred CCccCC-cCcc-cc-CcccEEEccCCccCCC-hhhcCcccccEEECCCCc--C-CCCh-HHc------------------
Confidence 887763 4432 22 677777777766 332 346667777777776664 1 1111 233
Q ss_pred CcccccCCCCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccC
Q 035853 435 QPSSIVLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFG 486 (581)
Q Consensus 435 ~~l~l~lp~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~ 486 (581)
.+++|++|++++|.+.+. ..++.+++|+.|++++|.+..
T Consensus 148 -----------~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 148 -----------FLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp -----------GCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred -----------cCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 344555555555554332 445566666666666655543
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.2e-14 Score=133.73 Aligned_cols=176 Identities=15% Similarity=0.237 Sum_probs=103.5
Q ss_pred CcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchh-hhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecC
Q 035853 303 LKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDE-IWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHP 381 (581)
Q Consensus 303 Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~ 381 (581)
-+.++.+++.++.+|..+ ..+|++|++++|.+..+|.. +..+++|++|++++|.+....+..+..+++|++|++.++
T Consensus 9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 467788888888888665 46899999999988888765 578889999999988877443344566666666666655
Q ss_pred C-Ccchh-hhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC--CCCCCCCccEEEEe
Q 035853 382 S-SCTQD-ILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP--EYQFPPRLIELSLS 456 (581)
Q Consensus 382 ~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp--~~~~l~~L~~L~L~ 456 (581)
. ..++. .+..+++|+.|+++++. + .+| .+..+++|++|+++
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~----------------------------------l~~~~~~~~~~l~~L~~L~l~ 132 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQ----------------------------------LQSLPDGVFDKLTQLKDLRLY 132 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC----------------------------------CCCCCTTTTTTCTTCCEEECC
T ss_pred cCCccCHhHhcCccCCCEEEcCCCc----------------------------------CcccCHhHhccCCcCCEEECC
Confidence 4 22222 23444444444444442 2 233 24455556666666
Q ss_pred eccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccCcccccc
Q 035853 457 NTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPK 522 (581)
Q Consensus 457 ~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~ 522 (581)
+|.+++.....++.+++|+.|++++|.+. ..+++|+.|.++.+.....+|..++.++.
T Consensus 133 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 133 QNQLKSVPDGVFDRLTSLQYIWLHDNPWD--------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSCCBC--------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CCccceeCHHHhccCCCccEEEecCCCee--------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 65554443344555666666666655332 23445555555554333345544444443
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.5e-15 Score=137.19 Aligned_cols=127 Identities=16% Similarity=0.140 Sum_probs=69.2
Q ss_pred cCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccc-cchhhhcCCCCcEeec
Q 035853 276 WFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHH-TPDEIWKMNELRHLNF 354 (581)
Q Consensus 276 ~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~l 354 (581)
.+++|+.|+++++.++.+| .+..+++|++|++++|.++.++ .++.+++|++|++++|.+.. .|..++.+++|++|++
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 3445555666655555555 4555556666666655544433 45555666666666555443 3444555556666666
Q ss_pred CCcccCCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEEEeeec
Q 035853 355 GSITLPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFRVHENL 404 (581)
Q Consensus 355 ~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~ 404 (581)
++|.+....|..++.+++|++|++.+|. ......+..+++|+.|++++|.
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG 170 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC
Confidence 6655554445555555666666655554 2222245555666666666553
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.9e-15 Score=142.92 Aligned_cols=171 Identities=18% Similarity=0.101 Sum_probs=130.9
Q ss_pred CcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEece
Q 035853 299 PLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISV 378 (581)
Q Consensus 299 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l 378 (581)
.+.++..++++++.++.++ .+..+++|++|++++|.+..+| .+..+++|++|++++|.+.+ ++. ++.+++|+.|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEEC
Confidence 5677888899999999887 6889999999999999999998 68899999999999998874 443 788888888888
Q ss_pred ecCC-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccccCCCCCCCCCccEEEEee
Q 035853 379 LHPS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVLPEYQFPPRLIELSLSN 457 (581)
Q Consensus 379 ~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l~lp~~~~l~~L~~L~L~~ 457 (581)
.++. ..++. +.. ++|+.|++++|. .. .+|.+..+++|+.|++++
T Consensus 93 ~~N~l~~l~~-~~~-~~L~~L~L~~N~--l~-------------------------------~~~~l~~l~~L~~L~Ls~ 137 (263)
T 1xeu_A 93 NRNRLKNLNG-IPS-ACLSRLFLDNNE--LR-------------------------------DTDSLIHLKNLEILSIRN 137 (263)
T ss_dssp CSSCCSCCTT-CCC-SSCCEEECCSSC--CS-------------------------------BSGGGTTCTTCCEEECTT
T ss_pred CCCccCCcCc-ccc-CcccEEEccCCc--cC-------------------------------CChhhcCcccccEEECCC
Confidence 8776 33332 222 666666666663 11 222345567788888888
Q ss_pred ccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccc
Q 035853 458 TELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWT 514 (581)
Q Consensus 458 ~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 514 (581)
|.+++. +.++.+++|+.|++++|.+.+. ..+..+++|+.|++++++ +...|
T Consensus 138 N~i~~~--~~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N~-~~~~~ 188 (263)
T 1xeu_A 138 NKLKSI--VMLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQK-CVNEP 188 (263)
T ss_dssp SCCCBC--GGGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEEE-EECCC
T ss_pred CcCCCC--hHHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCCc-ccCCc
Confidence 876543 4789999999999999988765 457889999999999984 44333
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.5e-14 Score=142.81 Aligned_cols=122 Identities=18% Similarity=0.229 Sum_probs=91.6
Q ss_pred eEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChh-hh-cccCCcEEEecCCcccccch-hhhcCCCCcEeecCCc
Q 035853 281 RLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSS-LC-NLLSLHTLDMRWSYIHHTPD-EIWKMNELRHLNFGSI 357 (581)
Q Consensus 281 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~-i~-~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~ 357 (581)
++++++++.++.+|..+. ..+++|+|++|.++.+|.. +. ++++|++|++++|.+..+|. .+..+++|++|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 678888888888887765 3688899999998877754 44 78899999999998888874 4788889999999988
Q ss_pred ccCCCCCCccCCCCCCcEeceecCC-Cc-chhhhCCCCCCCeEEEeeec
Q 035853 358 TLPAHPGKCCSSLENLNFISVLHPS-SC-TQDILGRLPSLQTFRVHENL 404 (581)
Q Consensus 358 ~~~~~~p~~i~~l~~L~~L~l~~~~-~~-~~~~l~~l~~L~~L~l~~~~ 404 (581)
.+....+..+..+++|+.|++.++. .. .+..+..+++|+.|+++++.
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~ 147 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ 147 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc
Confidence 8875444557777777777777766 22 24456666666666666663
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.48 E-value=2.3e-13 Score=127.92 Aligned_cols=122 Identities=17% Similarity=0.239 Sum_probs=79.1
Q ss_pred eEEEecCcccccCCCcccCcCCCcEEeccCCCCcccCh-hhhcccCCcEEEecCCccccc-chhhhcCCCCcEeecCCcc
Q 035853 281 RLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPS-SLCNLLSLHTLDMRWSYIHHT-PDEIWKMNELRHLNFGSIT 358 (581)
Q Consensus 281 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~ 358 (581)
+.++++++.++.+|..+. .+|++|++++|.++.+|. .+..+++|++|++++|.+..+ |..+..+++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 567777777777776655 577777777777776654 567777777777777777665 5567777777777777777
Q ss_pred cCCCCCCccCCCCCCcEeceecCC--CcchhhhCCCCCCCeEEEeeec
Q 035853 359 LPAHPGKCCSSLENLNFISVLHPS--SCTQDILGRLPSLQTFRVHENL 404 (581)
Q Consensus 359 ~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~ 404 (581)
+....+..+..+++|+.|++.++. ...+..+..+++|+.|+++++.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 139 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK 139 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc
Confidence 763333335666666666666665 2223445555555555555553
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.1e-13 Score=128.22 Aligned_cols=122 Identities=17% Similarity=0.165 Sum_probs=84.7
Q ss_pred eEEEecCcccccCCCcccCcCCCcEEeccCCCCcccC--hhhhcccCCcEEEecCCcccccch-hhhcCCCCcEeecCCc
Q 035853 281 RLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLP--SSLCNLLSLHTLDMRWSYIHHTPD-EIWKMNELRHLNFGSI 357 (581)
Q Consensus 281 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp--~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~ 357 (581)
++++++++.++.+|..+.. .+++|++++|.++.++ ..++++++|++|++++|.+..++. .+..+++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~~--~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCCT--TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCCC--CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 5778888888877776643 5678888888888663 236788888888888887777765 5777888888888888
Q ss_pred ccCCCCCCccCCCCCCcEeceecCC-C-cchhhhCCCCCCCeEEEeeec
Q 035853 358 TLPAHPGKCCSSLENLNFISVLHPS-S-CTQDILGRLPSLQTFRVHENL 404 (581)
Q Consensus 358 ~~~~~~p~~i~~l~~L~~L~l~~~~-~-~~~~~l~~l~~L~~L~l~~~~ 404 (581)
.+.+..+..++.+++|++|+++++. . ..+..+..+++|+.|+++++.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 140 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ 140 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc
Confidence 7765555556677777777766665 2 224445556666666666553
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.6e-13 Score=128.42 Aligned_cols=122 Identities=20% Similarity=0.236 Sum_probs=86.5
Q ss_pred eEEEecCcccccCCCcccCcCCCcEEeccCCCCccc-ChhhhcccCCcEEEecCCcccccchh-hhcCCCCcEeecCCcc
Q 035853 281 RLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHL-PSSLCNLLSLHTLDMRWSYIHHTPDE-IWKMNELRHLNFGSIT 358 (581)
Q Consensus 281 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 358 (581)
+.++.+++.+..+|..+. ++|++|++++|.+..+ |..+..+++|++|++++|.+..+|.. +..+++|++|++++|.
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 567777777777777665 6788888888888755 56677888888888888888777754 4678888888888887
Q ss_pred cCCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEEEeeec
Q 035853 359 LPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFRVHENL 404 (581)
Q Consensus 359 ~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~ 404 (581)
+....+..+..+++|+.|++.++. ..++..+..+++|+.|+++++.
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~ 146 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ 146 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC
T ss_pred CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc
Confidence 764444445667777777776666 5555555666666666666653
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-13 Score=123.73 Aligned_cols=128 Identities=20% Similarity=0.169 Sum_probs=89.6
Q ss_pred ccCCceeEEEecCcccc--cCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccc-cchhhhcCCCCcE
Q 035853 275 KWFKFLRLLDLGTIVLD--EYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHH-TPDEIWKMNELRH 351 (581)
Q Consensus 275 ~~~~~Lr~L~L~~~~l~--~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~-lp~~i~~l~~L~~ 351 (581)
...++|++|++++|.++ .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..+..+++|++
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 34567778888887776 7777777777888888887777766 567777778888887777666 6666666778888
Q ss_pred eecCCcccCCCCC--CccCCCCCCcEeceecCC-Ccchh----hhCCCCCCCeEEEeeec
Q 035853 352 LNFGSITLPAHPG--KCCSSLENLNFISVLHPS-SCTQD----ILGRLPSLQTFRVHENL 404 (581)
Q Consensus 352 L~l~~~~~~~~~p--~~i~~l~~L~~L~l~~~~-~~~~~----~l~~l~~L~~L~l~~~~ 404 (581)
|++++|.+.+ +| ..++.+++|+.|++.++. ...+. .+..+++|+.|++++|.
T Consensus 100 L~Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 100 LNLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp EECBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred EeccCCccCc-chhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 8887777653 32 556677777777776666 33333 56667777777776663
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=4e-16 Score=167.44 Aligned_cols=120 Identities=23% Similarity=0.292 Sum_probs=69.3
Q ss_pred CcEeceecCC-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCCCCCCCCCc
Q 035853 373 LNFISVLHPS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLPEYQFPPRL 450 (581)
Q Consensus 373 L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp~~~~l~~L 450 (581)
|+.|+++++. ..++. ++.+++|+.|++++|. ...+|..++.+++|+.|+++++. + .+|.++.+++|
T Consensus 443 L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~---l~~lp~~~~~l~~L~~L~Ls~N~--------l~~lp~l~~l~~L 510 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR---LRALPPALAALRCLEVLQASDNA--------LENVDGVANLPRL 510 (567)
T ss_dssp CSEEECTTSCCSSCCC-GGGGTTCCEEECCSSC---CCCCCGGGGGCTTCCEEECCSSC--------CCCCGGGTTCSSC
T ss_pred ceEEEecCCCCCCCcC-ccccccCcEeecCccc---ccccchhhhcCCCCCEEECCCCC--------CCCCcccCCCCCC
Confidence 4444444444 33332 4445555555555552 22445555555555555555543 4 44445567777
Q ss_pred cEEEEeeccCCCCC-cccccCCCCCCeEEEecCcccCceee--eCCCCCCCCcEEEe
Q 035853 451 IELSLSNTELKYDP-MPALEKLPHLRVLKLKKNSFFGRKLV--CSSGGFPSLKVMHL 504 (581)
Q Consensus 451 ~~L~L~~~~l~~~~-~~~l~~l~~L~~L~L~~~~~~~~~~~--~~~~~~~~L~~L~l 504 (581)
++|+|++|.+++.. +..++.+++|+.|++++|.+.+.... .....+|+|+.|++
T Consensus 511 ~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 511 QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred cEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 77777778776655 77788888888888888877654311 01223778887753
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.9e-13 Score=126.55 Aligned_cols=135 Identities=21% Similarity=0.229 Sum_probs=84.3
Q ss_pred cccccCCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCc-ccCcCCCcEEeccCCCCcccC
Q 035853 239 SWEHFDTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAG-INPLLLLKYLVLNIPSLKHLP 317 (581)
Q Consensus 239 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~-i~~l~~Lr~L~L~~~~i~~lp 317 (581)
++..+.++++.|.+.++.... .. +..|..+++|++|+|++|.+..+|.. +..+++|++|+|++|.++.+|
T Consensus 34 ip~~~~~~L~~L~Ls~n~i~~------~~---~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~ 104 (229)
T 3e6j_A 34 VPAGIPTNAQILYLHDNQITK------LE---PGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP 104 (229)
T ss_dssp CCSCCCTTCSEEECCSSCCCC------CC---TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred cCCCCCCCCCEEEcCCCccCc------cC---HHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccC
Confidence 444345667777776666543 22 34566667777777777776655533 466677777777777766665
Q ss_pred hh-hhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC
Q 035853 318 SS-LCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS 382 (581)
Q Consensus 318 ~~-i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~ 382 (581)
.. +..+++|++|++++|.+..+|..+..+++|++|++++|.+....+..+..+++|+.|++.++.
T Consensus 105 ~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 105 SAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred hhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 43 466777777777777666777666667777777777766654333445566666666655554
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.4e-13 Score=126.01 Aligned_cols=126 Identities=11% Similarity=0.150 Sum_probs=70.4
Q ss_pred ceeEEEecCcccccCC--CcccCcCCCcEEeccCCCCcccCh-hhhcccCCcEEEecCCcccccchh-hhcCCCCcEeec
Q 035853 279 FLRLLDLGTIVLDEYP--AGINPLLLLKYLVLNIPSLKHLPS-SLCNLLSLHTLDMRWSYIHHTPDE-IWKMNELRHLNF 354 (581)
Q Consensus 279 ~Lr~L~L~~~~l~~lp--~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l 354 (581)
.+++|++++|.++.++ ..+..+++|++|++++|.++.++. .++++++|++|++++|.+..+|.. +..+++|++|++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 3455666666655442 225555666666666666554443 455566666666666655555443 455666666666
Q ss_pred CCcccCCCCCCccCCCCCCcEeceecCC-Cc-chhhhCCCCCCCeEEEeeec
Q 035853 355 GSITLPAHPGKCCSSLENLNFISVLHPS-SC-TQDILGRLPSLQTFRVHENL 404 (581)
Q Consensus 355 ~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~-~~~~l~~l~~L~~L~l~~~~ 404 (581)
++|.+.+..|..+..+++|+.|++.++. .. .+..+..+++|+.|+++++.
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 6666555445555566666666665555 22 24455566666666666554
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.43 E-value=5.9e-13 Score=125.10 Aligned_cols=127 Identities=19% Similarity=0.260 Sum_probs=78.0
Q ss_pred CceeEEEecCcccccCCC-cccCcCCCcEEeccCCCCccc-ChhhhcccCCcEEEecCCcccccchh-hhcCCCCcEeec
Q 035853 278 KFLRLLDLGTIVLDEYPA-GINPLLLLKYLVLNIPSLKHL-PSSLCNLLSLHTLDMRWSYIHHTPDE-IWKMNELRHLNF 354 (581)
Q Consensus 278 ~~Lr~L~L~~~~l~~lp~-~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l 354 (581)
++|+.|++++|.++.+|. .+..+++|++|++++|.+..+ |..+.++++|++|++++|.+..+|.. +..+++|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 456666666666664443 466666666666666666644 45566666666666666666666654 355666666666
Q ss_pred CCcccCCCCCCccCCCCCCcEeceecCC-Ccch-hhhCCCCCCCeEEEeeec
Q 035853 355 GSITLPAHPGKCCSSLENLNFISVLHPS-SCTQ-DILGRLPSLQTFRVHENL 404 (581)
Q Consensus 355 ~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~ 404 (581)
++|.+.+..|..+..+++|+.|++.++. ..++ ..+..+++|+.|+++++.
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 6666665555566666666666666665 3222 335566666666666654
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.43 E-value=4e-13 Score=120.51 Aligned_cols=134 Identities=14% Similarity=0.127 Sum_probs=112.6
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcc-cChhhhc
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKH-LPSSLCN 322 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~-lp~~i~~ 322 (581)
.++++.|.+.++.... ... +..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..+++
T Consensus 23 ~~~L~~L~l~~n~l~~-----~~i---~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 93 (168)
T 2ell_A 23 PAAVRELVLDNCKSND-----GKI---EGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEK 93 (168)
T ss_dssp TTSCSEEECCSCBCBT-----TBC---SSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHH
T ss_pred cccCCEEECCCCCCCh-----hhH---HHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhh
Confidence 5778888888877641 012 45578899999999999999877 789999999999999999996 8888888
Q ss_pred ccCCcEEEecCCcccccc--hhhhcCCCCcEeecCCcccCCCCC---CccCCCCCCcEeceecCC-Ccch
Q 035853 323 LLSLHTLDMRWSYIHHTP--DEIWKMNELRHLNFGSITLPAHPG---KCCSSLENLNFISVLHPS-SCTQ 386 (581)
Q Consensus 323 L~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~p---~~i~~l~~L~~L~l~~~~-~~~~ 386 (581)
+++|++|++++|.+..+| ..+..+++|++|++++|.+....+ ..+..+++|+.|++.++. ...+
T Consensus 94 l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 94 LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 999999999999999887 678999999999999999984433 378999999999999987 4443
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-13 Score=121.07 Aligned_cols=125 Identities=17% Similarity=0.132 Sum_probs=84.2
Q ss_pred ccCCceeEEEecCcccc--cCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccc-cchhhhcCCCCcE
Q 035853 275 KWFKFLRLLDLGTIVLD--EYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHH-TPDEIWKMNELRH 351 (581)
Q Consensus 275 ~~~~~Lr~L~L~~~~l~--~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~-lp~~i~~l~~L~~ 351 (581)
...++|+.|++++|.++ .+|..++.+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..+..+++|++
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 34567788888888776 7777777778888888888877766 567777888888888887766 6666666788888
Q ss_pred eecCCcccCCC-CCCccCCCCCCcEeceecCC-Ccch----hhhCCCCCCCeEEE
Q 035853 352 LNFGSITLPAH-PGKCCSSLENLNFISVLHPS-SCTQ----DILGRLPSLQTFRV 400 (581)
Q Consensus 352 L~l~~~~~~~~-~p~~i~~l~~L~~L~l~~~~-~~~~----~~l~~l~~L~~L~l 400 (581)
|++++|.+.+. .+..++.+++|++|++.++. ...+ ..+..+++|+.|++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 88887776531 22456666666666666655 2222 23455555555543
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.37 E-value=4e-13 Score=117.92 Aligned_cols=127 Identities=16% Similarity=0.150 Sum_probs=106.9
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcc-cChhhhc
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKH-LPSSLCN 322 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~-lp~~i~~ 322 (581)
.++++.|.+.++.... ... +..+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..++.
T Consensus 16 ~~~l~~L~l~~n~l~~-----~~~---~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 86 (149)
T 2je0_A 16 PSDVKELVLDNSRSNE-----GKL---EGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEK 86 (149)
T ss_dssp GGGCSEEECTTCBCBT-----TBC---CSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHH
T ss_pred CccCeEEEccCCcCCh-----hHH---HHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhh
Confidence 5678888888877641 012 45678899999999999999877 789999999999999999996 8888888
Q ss_pred ccCCcEEEecCCcccccc--hhhhcCCCCcEeecCCcccCCCCC---CccCCCCCCcEecee
Q 035853 323 LLSLHTLDMRWSYIHHTP--DEIWKMNELRHLNFGSITLPAHPG---KCCSSLENLNFISVL 379 (581)
Q Consensus 323 L~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~p---~~i~~l~~L~~L~l~ 379 (581)
+++|++|++++|.+..+| ..++.+++|++|++++|.+.+..+ ..++.+++|+.|+++
T Consensus 87 l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 87 CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 999999999999998876 778999999999999999875443 368889999999875
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.36 E-value=8.8e-13 Score=133.93 Aligned_cols=171 Identities=22% Similarity=0.275 Sum_probs=136.3
Q ss_pred CcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhh-h-cCCCCcEeecCCcccCCCCCCccCCCCCCcEeceec
Q 035853 303 LKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEI-W-KMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLH 380 (581)
Q Consensus 303 Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i-~-~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~ 380 (581)
-+.++++++.++.+|..+. ..++.|+|++|.+..+|... . .+++|+.|++++|.+....+..+.++++|+.|++++
T Consensus 20 ~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 4789999999999998764 56999999999999988764 4 899999999999999866666799999999999999
Q ss_pred CC-Ccch-hhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC-C-C---CCCCCccE
Q 035853 381 PS-SCTQ-DILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP-E-Y---QFPPRLIE 452 (581)
Q Consensus 381 ~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp-~-~---~~l~~L~~ 452 (581)
+. ..++ ..+..+++|+.|+++++. .....+..+..+++|+.|+++++. + .+| . + ..+++|+.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~--i~~~~~~~~~~l~~L~~L~L~~N~--------l~~l~~~~~~~~~~l~~L~~ 167 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNH--IVVVDRNAFEDMAQLQKLYLSQNQ--------ISRFPVELIKDGNKLPKLML 167 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCSSC--------CCSCCGGGTC----CTTCCE
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCc--ccEECHHHhCCcccCCEEECCCCc--------CCeeCHHHhcCcccCCcCCE
Confidence 88 4444 357889999999999986 555556778888889998888866 6 677 3 3 56888888
Q ss_pred EEEeeccCCCCCcccccCCCC--CCeEEEecCccc
Q 035853 453 LSLSNTELKYDPMPALEKLPH--LRVLKLKKNSFF 485 (581)
Q Consensus 453 L~L~~~~l~~~~~~~l~~l~~--L~~L~L~~~~~~ 485 (581)
|+|++|.++......+..++. |+.|++++|.+.
T Consensus 168 L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 168 LDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp EECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred EECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 888888877666566777776 477888877653
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.3e-12 Score=144.45 Aligned_cols=154 Identities=19% Similarity=0.123 Sum_probs=102.0
Q ss_pred CCCeeEEEEEecccCCCccccc--CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccC
Q 035853 222 LEDFKRISVCRTVTNFDSWEHF--DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINP 299 (581)
Q Consensus 222 ~~~~r~lsl~~~~~~~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~ 299 (581)
...++++++. .......+... ..+|+.+.+.......-. . ..+ ...+..++.|++|+|++|.+..+|..+..
T Consensus 172 ~~~~~~l~L~-~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~-~-~~~---~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~ 245 (727)
T 4b8c_D 172 TPLTPKIELF-ANGKDEANQALLQHKKLSQYSIDEDDDIENR-M-VMP---KDSKYDDQLWHALDLSNLQIFNISANIFK 245 (727)
T ss_dssp --------------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGG
T ss_pred CCccceEEee-CCCCCcchhhHhhcCccCcccccCccccccc-e-ecC---hhhhccCCCCcEEECCCCCCCCCChhhcC
Confidence 3457777776 33333233222 444444444332211100 0 133 67789999999999999999999999999
Q ss_pred cCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEecee
Q 035853 300 LLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVL 379 (581)
Q Consensus 300 l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~ 379 (581)
+++|++|+|++|.++.+|..+++|++|++|+|++|.+..+|..++.+++|++|+|++|.+. .+|..++++++|+.|++.
T Consensus 246 l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 246 YDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp CCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECT
T ss_pred CCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCC
Confidence 9999999999999999999999999999999999999999999999999999999999886 889899999999999999
Q ss_pred cCC
Q 035853 380 HPS 382 (581)
Q Consensus 380 ~~~ 382 (581)
++.
T Consensus 325 ~N~ 327 (727)
T 4b8c_D 325 GNP 327 (727)
T ss_dssp TSC
T ss_pred CCc
Confidence 988
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.36 E-value=6.4e-13 Score=120.21 Aligned_cols=128 Identities=16% Similarity=0.185 Sum_probs=80.1
Q ss_pred hccCCceeEEEecCcccccCCCcccCcC-CCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhh-hcCCCCcE
Q 035853 274 CKWFKFLRLLDLGTIVLDEYPAGINPLL-LLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEI-WKMNELRH 351 (581)
Q Consensus 274 ~~~~~~Lr~L~L~~~~l~~lp~~i~~l~-~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i-~~l~~L~~ 351 (581)
+..+.+|+.|++++|.++.+|. +..+. +|++|++++|.++.+ ..++.+++|++|++++|.+..+|..+ ..+++|++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 4456667777777776665543 44443 677777777766665 45666777777777777666666544 66677777
Q ss_pred eecCCcccCCCCCC--ccCCCCCCcEeceecCC-Ccchhh----hCCCCCCCeEEEeeec
Q 035853 352 LNFGSITLPAHPGK--CCSSLENLNFISVLHPS-SCTQDI----LGRLPSLQTFRVHENL 404 (581)
Q Consensus 352 L~l~~~~~~~~~p~--~i~~l~~L~~L~l~~~~-~~~~~~----l~~l~~L~~L~l~~~~ 404 (581)
|++++|.+. .+|. .++.+++|+.|++.++. ...+.. +..+++|+.|+++.+.
T Consensus 93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 777776664 4444 55666666666666665 333332 5566667777666664
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.36 E-value=2.3e-12 Score=118.35 Aligned_cols=122 Identities=19% Similarity=0.242 Sum_probs=95.0
Q ss_pred eEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChh--hhcccCCcEEEecCCccccc-chhhhcCCCCcEeecCCc
Q 035853 281 RLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSS--LCNLLSLHTLDMRWSYIHHT-PDEIWKMNELRHLNFGSI 357 (581)
Q Consensus 281 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~--i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~ 357 (581)
++++++++.++.+|..+.. +|++|++++|.++.+|.. ++.+++|++|++++|.+..+ |..+..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 6788888888888877654 888888888888877753 78888888888888888776 567788888888888888
Q ss_pred ccCCCCCCccCCCCCCcEeceecCC--CcchhhhCCCCCCCeEEEeeec
Q 035853 358 TLPAHPGKCCSSLENLNFISVLHPS--SCTQDILGRLPSLQTFRVHENL 404 (581)
Q Consensus 358 ~~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~ 404 (581)
.+.+..+..++.+++|++|++.++. ...+..+..+++|+.|+++++.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 8876666667778888888877776 3335566777777777777764
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-13 Score=152.94 Aligned_cols=159 Identities=16% Similarity=0.051 Sum_probs=104.8
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeE-----EEecCcccccCCCcccCcCCCcEEeccCCCCcccCh
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRL-----LDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPS 318 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~-----L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~ 318 (581)
.++++.|.+.++.... . ...+.....|+. +++..+.+...|..+..+.+|++|+|++|.+..+|.
T Consensus 172 ~~~~~~l~L~~n~~~~------~----~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~ 241 (727)
T 4b8c_D 172 TPLTPKIELFANGKDE------A----NQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISA 241 (727)
T ss_dssp ------------------------------------------------------------CCCCCCEEECTTSCCSCCCG
T ss_pred CCccceEEeeCCCCCc------c----hhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCCh
Confidence 4567777776655432 1 122222222333 333334444556778899999999999999999999
Q ss_pred hhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCe
Q 035853 319 SLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQT 397 (581)
Q Consensus 319 ~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~ 397 (581)
.+.++++|++|+|++|.+..+|..++.+++|++|+|++|.+. .+|..++++++|+.|++.++. ..+|..++.+++|+.
T Consensus 242 ~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~ 320 (727)
T 4b8c_D 242 NIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQF 320 (727)
T ss_dssp GGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCC
T ss_pred hhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccE
Confidence 999999999999999999999999999999999999999998 889999999999999999998 888888999999999
Q ss_pred EEEeeecccchhchhhhc
Q 035853 398 FRVHENLSSYQSMLSNNL 415 (581)
Q Consensus 398 L~l~~~~~~~~~~l~~~l 415 (581)
|++++|. .....|..+
T Consensus 321 L~L~~N~--l~~~~p~~~ 336 (727)
T 4b8c_D 321 LGVEGNP--LEKQFLKIL 336 (727)
T ss_dssp EECTTSC--CCSHHHHHH
T ss_pred EeCCCCc--cCCCChHHH
Confidence 9999997 444444443
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=6.8e-12 Score=115.14 Aligned_cols=122 Identities=20% Similarity=0.254 Sum_probs=101.8
Q ss_pred eEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccch-hhhcCCCCcEeecCCccc
Q 035853 281 RLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPD-EIWKMNELRHLNFGSITL 359 (581)
Q Consensus 281 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~ 359 (581)
++++++++.++.+|..+. .+|++|++++|.++.+|..+.++++|++|++++|.+..++. .+..+++|++|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 678899999988887765 58999999999999999899999999999999998888875 478899999999999998
Q ss_pred CCCCCCccCCCCCCcEeceecCC-Ccchh-hhCCCCCCCeEEEeeec
Q 035853 360 PAHPGKCCSSLENLNFISVLHPS-SCTQD-ILGRLPSLQTFRVHENL 404 (581)
Q Consensus 360 ~~~~p~~i~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~ 404 (581)
....|..+..+++|+.|++.++. ..++. .+..+++|+.|+++++.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 86666678888899999888887 44444 46778888888888775
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.33 E-value=2.2e-12 Score=116.71 Aligned_cols=127 Identities=11% Similarity=0.063 Sum_probs=108.9
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhh-hc
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSL-CN 322 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i-~~ 322 (581)
+++++.|.+.++....+ +......++|++|++++|.++.+ ..++.+++|++|++++|.++.+|+.+ +.
T Consensus 18 ~~~L~~L~l~~n~l~~i----------~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 86 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVI----------ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQA 86 (176)
T ss_dssp TTSCEEEECTTSCCCSC----------CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHH
T ss_pred cCCceEEEeeCCCCchh----------HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhc
Confidence 77889999988876431 22233344999999999999977 68999999999999999999988665 89
Q ss_pred ccCCcEEEecCCcccccch--hhhcCCCCcEeecCCcccCCCCCCc----cCCCCCCcEeceecCC
Q 035853 323 LLSLHTLDMRWSYIHHTPD--EIWKMNELRHLNFGSITLPAHPGKC----CSSLENLNFISVLHPS 382 (581)
Q Consensus 323 L~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~~----i~~l~~L~~L~l~~~~ 382 (581)
+++|++|++++|.+..+|. .+..+++|++|++++|.+. ..|.. ++.+++|+.|++..+.
T Consensus 87 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 87 LPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence 9999999999999999987 7899999999999999987 56664 8899999999999887
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=3.5e-12 Score=136.78 Aligned_cols=150 Identities=17% Similarity=0.170 Sum_probs=109.7
Q ss_pred HHHhccCCceeEEE-ecCcccccCCC------cccC--cCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccch
Q 035853 271 NAICKWFKFLRLLD-LGTIVLDEYPA------GINP--LLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPD 341 (581)
Q Consensus 271 ~~~~~~~~~Lr~L~-L~~~~l~~lp~------~i~~--l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~ 341 (581)
+..+..+++|+.|+ ++.+.+..++. .+.. ...|++|++++|.++.+|. ++.+++|++|++++|.+..+|.
T Consensus 402 ~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~ 480 (567)
T 1dce_A 402 KETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPP 480 (567)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCG
T ss_pred HHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccch
Confidence 45667777788887 45443322221 1111 1258889999988888886 8888999999999988888888
Q ss_pred hhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC-Ccc--hhhhCCCCCCCeEEEeeecccchhchhh----h
Q 035853 342 EIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS-SCT--QDILGRLPSLQTFRVHENLSSYQSMLSN----N 414 (581)
Q Consensus 342 ~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~--~~~l~~l~~L~~L~l~~~~~~~~~~l~~----~ 414 (581)
.++.+++|++|++++|.+.+ +| .++.+++|+.|+++++. ... |..++.+++|+.|++++|. . ...|. .
T Consensus 481 ~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~--l-~~~~~~~~~l 555 (567)
T 1dce_A 481 ALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS--L-CQEEGIQERL 555 (567)
T ss_dssp GGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG--G-GGSSSCTTHH
T ss_pred hhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc--C-CCCccHHHHH
Confidence 88889999999999988874 66 78888999999988888 444 7888889999999998885 2 22222 2
Q ss_pred cCCCCCCCEEEe
Q 035853 415 LCPLLHLESLKL 426 (581)
Q Consensus 415 l~~~~~L~~L~l 426 (581)
+..+++|+.|++
T Consensus 556 ~~~lp~L~~L~l 567 (567)
T 1dce_A 556 AEMLPSVSSILT 567 (567)
T ss_dssp HHHCTTCSEEEC
T ss_pred HHHCcccCccCC
Confidence 233677887753
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.7e-11 Score=122.74 Aligned_cols=284 Identities=12% Similarity=0.033 Sum_probs=177.9
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhcc-CCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhc
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKW-FKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCN 322 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~ 322 (581)
..+++.|.+.+.-... . ...+.. +++|++|||+++.+......-+.++.++++.+..+.+. +..+.+
T Consensus 24 ~~~l~~L~l~g~i~~~------~----~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~--~~aF~~ 91 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAE------D----FRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVP--AYAFSN 91 (329)
T ss_dssp HHHCSEEEEEEEECHH------H----HHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEEC--TTTTEE
T ss_pred hCceeEEEEeccccHH------H----HHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccC--HHHhcc
Confidence 5678888888753311 1 234444 88999999999998722111223333566666555332 134556
Q ss_pred --------ccCCcEEEecCCcccccchh-hhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC------Ccchh
Q 035853 323 --------LLSLHTLDMRWSYIHHTPDE-IWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS------SCTQD 387 (581)
Q Consensus 323 --------L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~------~~~~~ 387 (581)
+.+|+.|++.. .+..++.. +..+++|+.+++..|.+....+..+..+.++..+...... .....
T Consensus 92 ~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~ 170 (329)
T 3sb4_A 92 VVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHF 170 (329)
T ss_dssp EETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTS
T ss_pred cccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccc
Confidence 89999999988 78888765 6789999999999887764455567776667666543311 11111
Q ss_pred hhCCCCCCC-eEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccccCC-CCCCCCCccEEEEeeccCCCCCc
Q 035853 388 ILGRLPSLQ-TFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVLP-EYQFPPRLIELSLSNTELKYDPM 465 (581)
Q Consensus 388 ~l~~l~~L~-~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l~lp-~~~~l~~L~~L~L~~~~l~~~~~ 465 (581)
.+..+.+|+ .+.+.... .....+...-....++..+.+.+.-. . ..+. ....+++|+.++|.+|.++.-..
T Consensus 171 ~f~~~~~L~~~i~~~~~~-~l~~~~~~~~~~~~~~~~l~~~~~l~----~--~~~~~l~~~~~~L~~l~L~~n~i~~I~~ 243 (329)
T 3sb4_A 171 AFIEGEPLETTIQVGAMG-KLEDEIMKAGLQPRDINFLTIEGKLD----N--ADFKLIRDYMPNLVSLDISKTNATTIPD 243 (329)
T ss_dssp CEEESCCCEEEEEECTTC-CHHHHHHHTTCCGGGCSEEEEEECCC----H--HHHHHHHHHCTTCCEEECTTBCCCEECT
T ss_pred ccccccccceeEEecCCC-cHHHHHhhcccCccccceEEEeeeec----H--HHHHHHHHhcCCCeEEECCCCCcceecH
Confidence 233455555 34444332 11111112222345666666665100 0 0000 01137889999999887766566
Q ss_pred ccccCCCCCCeEEEecCcccCceeeeCCCCCCCCc-EEEecCCCcccccc-cCcccccccceEeeccCcCCCCCcc-ccc
Q 035853 466 PALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLK-VMHLKSMFWLEEWT-MENDAMPKLESLIINPCAYLKILPE-ELW 542 (581)
Q Consensus 466 ~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~-~l~ 542 (581)
..|.+|++|+.+.+.++ + .......+.++++|+ .+.+.+ .++.++ ..+..|++|+.|++.++. +..++. .+.
T Consensus 244 ~aF~~~~~L~~l~l~~n-i-~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~-i~~I~~~aF~ 318 (329)
T 3sb4_A 244 FTFAQKKYLLKIKLPHN-L-KTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDK-ITTLGDELFG 318 (329)
T ss_dssp TTTTTCTTCCEEECCTT-C-CEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSC-CCEECTTTTC
T ss_pred hhhhCCCCCCEEECCcc-c-ceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCc-cCccchhhhc
Confidence 67889999999999865 2 233345677888998 999987 577775 567889999999998765 666654 688
Q ss_pred CCCCccEEEe
Q 035853 543 RIKSLTKLEL 552 (581)
Q Consensus 543 ~l~~L~~L~l 552 (581)
++++|+.|+.
T Consensus 319 ~~~~L~~ly~ 328 (329)
T 3sb4_A 319 NGVPSKLIYK 328 (329)
T ss_dssp TTCCCCEEEC
T ss_pred CCcchhhhcc
Confidence 8999998864
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.27 E-value=7.6e-14 Score=128.99 Aligned_cols=106 Identities=18% Similarity=0.181 Sum_probs=60.4
Q ss_pred cccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcE
Q 035853 296 GINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNF 375 (581)
Q Consensus 296 ~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 375 (581)
.++.+++|++|++++|.++.+| .++++++|++|++++|.+..+|..+..+++|++|++++|.+.+ +| .++.+++|+.
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRV 119 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCE
Confidence 5555566666666666555555 5555666666666666555555555555566666666655542 33 3455555555
Q ss_pred eceecCC-Ccch--hhhCCCCCCCeEEEeeec
Q 035853 376 ISVLHPS-SCTQ--DILGRLPSLQTFRVHENL 404 (581)
Q Consensus 376 L~l~~~~-~~~~--~~l~~l~~L~~L~l~~~~ 404 (581)
|++.++. ...+ ..+..+++|+.|++++|.
T Consensus 120 L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp EEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred EECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 5555554 2222 356666667777776664
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.23 E-value=3.7e-13 Score=124.29 Aligned_cols=126 Identities=19% Similarity=0.218 Sum_probs=107.5
Q ss_pred HHHhccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCc
Q 035853 271 NAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELR 350 (581)
Q Consensus 271 ~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~ 350 (581)
+..+..+++|++|++++|.++.+| .+..+++|++|++++|.++.+|..++.+++|++|++++|.+..+| .+..+++|+
T Consensus 41 ~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~ 118 (198)
T 1ds9_A 41 DATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLR 118 (198)
T ss_dssp HHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSS
T ss_pred hHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCC
Confidence 458889999999999999999888 899999999999999999999988888999999999999998888 588999999
Q ss_pred EeecCCcccCCCCC--CccCCCCCCcEeceecCC-Ccc-hh----------hhCCCCCCCeEE
Q 035853 351 HLNFGSITLPAHPG--KCCSSLENLNFISVLHPS-SCT-QD----------ILGRLPSLQTFR 399 (581)
Q Consensus 351 ~L~l~~~~~~~~~p--~~i~~l~~L~~L~l~~~~-~~~-~~----------~l~~l~~L~~L~ 399 (581)
+|++++|.+.. ++ ..+..+++|+.|++.++. ... +. .+..+++|+.|+
T Consensus 119 ~L~l~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 119 VLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EEEESEEECCC-HHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred EEECCCCcCCc-hhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 99999998873 33 368899999999999887 222 21 266778888776
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.22 E-value=2.9e-11 Score=110.93 Aligned_cols=122 Identities=13% Similarity=0.121 Sum_probs=91.2
Q ss_pred CcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchh--hhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceec
Q 035853 303 LKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDE--IWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLH 380 (581)
Q Consensus 303 Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~--i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~ 380 (581)
-++++++++.++.+|..+.. +|++|++++|.+..+|.. ++.+++|++|++++|.+.+..|..++.+++|+.|++++
T Consensus 10 ~~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TTEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 38999999999999987754 999999999999888864 88999999999999999877788888888888888888
Q ss_pred CC-Ccch-hhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeec
Q 035853 381 PS-SCTQ-DILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVD 428 (581)
Q Consensus 381 ~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~ 428 (581)
+. ...+ ..+..+++|+.|+++++. .....|..+..+++|+.|++++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQ--ISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSC--CCEECTTSSTTCTTCCEEECTT
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCc--CCeeCHHHhhcCCCCCEEEeCC
Confidence 77 3333 336677777777777775 3333344444444444444433
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=9e-11 Score=107.60 Aligned_cols=100 Identities=16% Similarity=0.205 Sum_probs=82.6
Q ss_pred CcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC
Q 035853 303 LKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS 382 (581)
Q Consensus 303 Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~ 382 (581)
-++++++++.++.+|..+. ++|++|++++|.+..+|..+..+++|++|++++|.+....+..+.++++|++|+++++.
T Consensus 12 ~~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 3689999999999997764 69999999999999999999999999999999999986666678888888888888877
Q ss_pred -Ccc-hhhhCCCCCCCeEEEeeec
Q 035853 383 -SCT-QDILGRLPSLQTFRVHENL 404 (581)
Q Consensus 383 -~~~-~~~l~~l~~L~~L~l~~~~ 404 (581)
..+ +..+..+++|+.|+++++.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~ 113 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGND 113 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCC
Confidence 333 3356677777777777764
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.5e-10 Score=104.51 Aligned_cols=122 Identities=25% Similarity=0.290 Sum_probs=79.2
Q ss_pred eEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChh-hhcccCCcEEEecCCcccccchh-hhcCCCCcEeecCCcc
Q 035853 281 RLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSS-LCNLLSLHTLDMRWSYIHHTPDE-IWKMNELRHLNFGSIT 358 (581)
Q Consensus 281 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 358 (581)
+.++++++.++.+|..+. ++|++|++++|.++.+|.. ++++++|++|++++|.+..+|.. +..+++|++|++++|.
T Consensus 10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 566777777766665443 5777777777777766543 46677777777777777666654 4667777777777777
Q ss_pred cCCCCCCccCCCCCCcEeceecCC-Ccchhh-hCCCCCCCeEEEeeec
Q 035853 359 LPAHPGKCCSSLENLNFISVLHPS-SCTQDI-LGRLPSLQTFRVHENL 404 (581)
Q Consensus 359 ~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~-l~~l~~L~~L~l~~~~ 404 (581)
+.+..+..++.+++|+.|++.++. ..++.. +..+++|+.|+++++.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 664444445667777777776666 433333 4556677777776664
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.12 E-value=2e-10 Score=103.77 Aligned_cols=105 Identities=21% Similarity=0.262 Sum_probs=72.9
Q ss_pred CceeEEEecCcccccCCC-cccCcCCCcEEeccCCCCcccChh-hhcccCCcEEEecCCcccccchh-hhcCCCCcEeec
Q 035853 278 KFLRLLDLGTIVLDEYPA-GINPLLLLKYLVLNIPSLKHLPSS-LCNLLSLHTLDMRWSYIHHTPDE-IWKMNELRHLNF 354 (581)
Q Consensus 278 ~~Lr~L~L~~~~l~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l 354 (581)
++|+.|+++++.++.+|. .++.+++|++|++++|.++.+|.. ++.+++|++|++++|.+..+|.. +..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 567777777777775554 356777777777777777766644 56777777777777777776654 466777777777
Q ss_pred CCcccCCCCCCccCCCCCCcEeceecCC
Q 035853 355 GSITLPAHPGKCCSSLENLNFISVLHPS 382 (581)
Q Consensus 355 ~~~~~~~~~p~~i~~l~~L~~L~l~~~~ 382 (581)
++|.+.+..+..+..+++|+.|++.++.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 7777764333335667777777777765
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.3e-10 Score=101.96 Aligned_cols=100 Identities=24% Similarity=0.342 Sum_probs=85.1
Q ss_pred eEEEecCcccccCCCcccCcCCCcEEeccCCCCccc-ChhhhcccCCcEEEecCCcccccchhh-hcCCCCcEeecCCcc
Q 035853 281 RLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHL-PSSLCNLLSLHTLDMRWSYIHHTPDEI-WKMNELRHLNFGSIT 358 (581)
Q Consensus 281 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~ 358 (581)
+.++++++.++.+|..+. .+|++|++++|.++.+ |..++++++|++|+|++|.+..+|..+ ..+++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 788999999999998775 7999999999999977 567889999999999999999998764 789999999999998
Q ss_pred cCCCCCCccCCCCCCcEeceecCC
Q 035853 359 LPAHPGKCCSSLENLNFISVLHPS 382 (581)
Q Consensus 359 ~~~~~p~~i~~l~~L~~L~l~~~~ 382 (581)
+....+..+..+++|+.|++.++.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred cceeCHHHhccccCCCEEEeCCCC
Confidence 875444448888888888888876
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.12 E-value=2.7e-10 Score=102.10 Aligned_cols=101 Identities=23% Similarity=0.294 Sum_probs=85.9
Q ss_pred eeEEEecCcccccCCCcccCcCCCcEEeccCCCCccc-ChhhhcccCCcEEEecCCcccccchhh-hcCCCCcEeecCCc
Q 035853 280 LRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHL-PSSLCNLLSLHTLDMRWSYIHHTPDEI-WKMNELRHLNFGSI 357 (581)
Q Consensus 280 Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~ 357 (581)
.++++++++.++.+|..+. ++|++|++++|.++.+ |..++++++|++|++++|.+..+|... ..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4789999999999998775 7899999999999977 566899999999999999998988764 78999999999999
Q ss_pred ccCCCCCCccCCCCCCcEeceecCC
Q 035853 358 TLPAHPGKCCSSLENLNFISVLHPS 382 (581)
Q Consensus 358 ~~~~~~p~~i~~l~~L~~L~l~~~~ 382 (581)
.+.+..+..+..+++|+.|++.++.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 9885555558888888888888775
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.05 E-value=8.3e-10 Score=110.35 Aligned_cols=278 Identities=12% Similarity=0.024 Sum_probs=174.9
Q ss_pred CCeeEEEEEecccCCCccccc---CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccC
Q 035853 223 EDFKRISVCRTVTNFDSWEHF---DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINP 299 (581)
Q Consensus 223 ~~~r~lsl~~~~~~~~~~~~~---~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~ 299 (581)
..+.++.+. +.....-...+ .++|+.|.+.++...... .....++.++.+.+..+.+. +..|.+
T Consensus 25 ~~l~~L~l~-g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~----------~~~~~~~~~~~~~~~~~~I~--~~aF~~ 91 (329)
T 3sb4_A 25 NSITHLTLT-GKLNAEDFRHLRDEFPSLKVLDISNAEIKMYS----------GKAGTYPNGKFYIYMANFVP--AYAFSN 91 (329)
T ss_dssp HHCSEEEEE-EEECHHHHHHHHHSCTTCCEEEEEEEEECCEE----------ESSSSSGGGCCEEECTTEEC--TTTTEE
T ss_pred CceeEEEEe-ccccHHHHHHHHHhhccCeEEecCcceeEEec----------CccccccccccccccccccC--HHHhcc
Confidence 356777777 43221111112 678999999988764100 00112222455555555332 133556
Q ss_pred --------cCCCcEEeccCCCCcccCh-hhhcccCCcEEEecCCcccccchh-hhcCCCCcEeecCCccc----CCCCCC
Q 035853 300 --------LLLLKYLVLNIPSLKHLPS-SLCNLLSLHTLDMRWSYIHHTPDE-IWKMNELRHLNFGSITL----PAHPGK 365 (581)
Q Consensus 300 --------l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~----~~~~p~ 365 (581)
+.+|+.|++.. .++.+++ .+..|.+|+.+++..+.+..++.. +..+.++..+....... ...-..
T Consensus 92 ~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~ 170 (329)
T 3sb4_A 92 VVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHF 170 (329)
T ss_dssp EETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTS
T ss_pred cccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccc
Confidence 89999999988 8887774 588899999999999877777654 45566777775544221 111122
Q ss_pred ccCCCCCCc-EeceecCC---CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-c
Q 035853 366 CCSSLENLN-FISVLHPS---SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-V 440 (581)
Q Consensus 366 ~i~~l~~L~-~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~ 440 (581)
.+.++.+|+ .+.+.... ......-....++..+.+.+.- ...........+++|+.++++.+. + .
T Consensus 171 ~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l--~~~~~~~l~~~~~~L~~l~L~~n~--------i~~ 240 (329)
T 3sb4_A 171 AFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKL--DNADFKLIRDYMPNLVSLDISKTN--------ATT 240 (329)
T ss_dssp CEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECC--CHHHHHHHHHHCTTCCEEECTTBC--------CCE
T ss_pred ccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeee--cHHHHHHHHHhcCCCeEEECCCCC--------cce
Confidence 344555666 33332222 1111112245677888887764 222222222347899999999755 6 7
Q ss_pred CC--CCCCCCCccEEEEeeccCCCCCcccccCCCCCC-eEEEecCcccCceeeeCCCCCCCCcEEEecCCCccccccc-C
Q 035853 441 LP--EYQFPPRLIELSLSNTELKYDPMPALEKLPHLR-VLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTM-E 516 (581)
Q Consensus 441 lp--~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~-~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~ 516 (581)
+| .+..|++|+.|++.++ +..-....|.++++|+ .+.+.+ .+. ......+.++++|+.+++.++ .++.++. .
T Consensus 241 I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l~l~~n-~i~~I~~~a 316 (329)
T 3sb4_A 241 IPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYVLATGD-KITTLGDEL 316 (329)
T ss_dssp ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEEEECSS-CCCEECTTT
T ss_pred ecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCEEEeCCC-ccCccchhh
Confidence 87 6889999999999987 5555556789999999 999985 332 222456788999999999775 6777765 5
Q ss_pred cccccccceEee
Q 035853 517 NDAMPKLESLII 528 (581)
Q Consensus 517 ~~~l~~L~~L~l 528 (581)
+..+++|+.|+.
T Consensus 317 F~~~~~L~~ly~ 328 (329)
T 3sb4_A 317 FGNGVPSKLIYK 328 (329)
T ss_dssp TCTTCCCCEEEC
T ss_pred hcCCcchhhhcc
Confidence 788999998864
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.00 E-value=1.5e-08 Score=103.69 Aligned_cols=240 Identities=11% Similarity=0.127 Sum_probs=136.2
Q ss_pred HHhccCCceeEEEecCcccccCCC-cccCcCCCcEEeccCCCCcccC-hhhhcccCCcEEEecCCcccccchhhhcCCCC
Q 035853 272 AICKWFKFLRLLDLGTIVLDEYPA-GINPLLLLKYLVLNIPSLKHLP-SSLCNLLSLHTLDMRWSYIHHTPDEIWKMNEL 349 (581)
Q Consensus 272 ~~~~~~~~Lr~L~L~~~~l~~lp~-~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L 349 (581)
..|.++ +|+.+.+..+ ++.++. .|.+ .+|+.+.+.. .++.++ ..+.+|.+|+.+++..+.+..+|.......+|
T Consensus 130 ~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L 205 (401)
T 4fdw_A 130 DAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGI 205 (401)
T ss_dssp TTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCC
T ss_pred hhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeeccc
Confidence 344443 4666665544 443332 2333 2466666654 444443 34556666666666666666666554445566
Q ss_pred cEeecCCcccCCCCCCccCCCCCCcEeceecCCCcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecC
Q 035853 350 RHLNFGSITLPAHPGKCCSSLENLNFISVLHPSSCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDE 429 (581)
Q Consensus 350 ~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~ 429 (581)
+.+.+..+ +...-.. .+.++++|+.+.+..+ ....-...+.. .+|+.+.+..
T Consensus 206 ~~l~lp~~-l~~I~~~----------------------aF~~~~~L~~l~l~~~---l~~I~~~aF~~-~~L~~i~lp~- 257 (401)
T 4fdw_A 206 EEVLLPVT-LKEIGSQ----------------------AFLKTSQLKTIEIPEN---VSTIGQEAFRE-SGITTVKLPN- 257 (401)
T ss_dssp SEEECCTT-CCEECTT----------------------TTTTCTTCCCEECCTT---CCEECTTTTTT-CCCSEEEEET-
T ss_pred CEEEeCCc-hheehhh----------------------HhhCCCCCCEEecCCC---ccCcccccccc-CCccEEEeCC-
Confidence 66655422 2111112 2344455555554432 11111223333 4677776643
Q ss_pred CcccCCcccc-cCC--CCCCCCCccEEEEeeccCC-----CCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcE
Q 035853 430 RTIALQPSSI-VLP--EYQFPPRLIELSLSNTELK-----YDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKV 501 (581)
Q Consensus 430 ~~i~L~~l~l-~lp--~~~~l~~L~~L~L~~~~l~-----~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~ 501 (581)
. + .++ .+..|++|+.+.+.++... .-....+.+|++|+.+.+. +.+. ..-...+.++++|+.
T Consensus 258 ~--------i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~-~I~~~aF~~c~~L~~ 327 (401)
T 4fdw_A 258 G--------VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIR-ILGQGLLGGNRKVTQ 327 (401)
T ss_dssp T--------CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCC-EECTTTTTTCCSCCE
T ss_pred C--------ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceE-EEhhhhhcCCCCccE
Confidence 1 3 454 5777888888888877543 1233467889999999997 3332 222345677899999
Q ss_pred EEecCCCcccccc-cCcccccccceEeeccCcCCCCCcccccCCC-CccEEEeeCCC
Q 035853 502 MHLKSMFWLEEWT-MENDAMPKLESLIINPCAYLKILPEELWRIK-SLTKLELWWPR 556 (581)
Q Consensus 502 L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~-~L~~L~l~~c~ 556 (581)
+.|.. +++.+. ..+..+ +|+.+.+.++....-.+..+..++ +++.|.+-...
T Consensus 328 l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 328 LTIPA--NVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp EEECT--TCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred EEECc--cccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 99965 466664 346777 999999999853332233455664 78889886544
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.00 E-value=2.3e-08 Score=102.33 Aligned_cols=172 Identities=9% Similarity=0.050 Sum_probs=116.3
Q ss_pred ccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC-
Q 035853 366 CCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP- 442 (581)
Q Consensus 366 ~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp- 442 (581)
.+.++++|+.+.+..+. ..++.....+.+|+.+.+... ....-...+..+.+|+.+.+.. + + .++
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~---l~~I~~~aF~~~~~L~~l~l~~-~--------l~~I~~ 242 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT---LKEIGSQAFLKTSQLKTIEIPE-N--------VSTIGQ 242 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT---CCEECTTTTTTCTTCCCEECCT-T--------CCEECT
T ss_pred HhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc---hheehhhHhhCCCCCCEEecCC-C--------ccCccc
Confidence 34455555555554433 333333223566777776533 2333345688899999999975 1 4 555
Q ss_pred -CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccC----ceeeeCCCCCCCCcEEEecCCCccccccc-C
Q 035853 443 -EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFG----RKLVCSSGGFPSLKVMHLKSMFWLEEWTM-E 516 (581)
Q Consensus 443 -~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~ 516 (581)
.+.. .+|+.+.+.++ ++.-....+.+|++|+.+.+.++.... ......+.++++|+.+.+.+ .++.++. .
T Consensus 243 ~aF~~-~~L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~a 318 (401)
T 4fdw_A 243 EAFRE-SGITTVKLPNG-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGL 318 (401)
T ss_dssp TTTTT-CCCSEEEEETT-CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTT
T ss_pred ccccc-CCccEEEeCCC-ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhh
Confidence 4555 78999999543 444445678999999999998765431 12244578899999999985 4777754 4
Q ss_pred cccccccceEeeccCcCCCCCcc-cccCCCCccEEEeeCCC
Q 035853 517 NDAMPKLESLIINPCAYLKILPE-ELWRIKSLTKLELWWPR 556 (581)
Q Consensus 517 ~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~ 556 (581)
+..|++|+.+.|..+ +..++. .+.++ +|++|.+.++.
T Consensus 319 F~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 319 LGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp TTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCSS
T ss_pred hcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCC
Confidence 778899999999654 666653 67888 99999998764
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.88 E-value=4.6e-09 Score=94.01 Aligned_cols=101 Identities=17% Similarity=0.175 Sum_probs=84.7
Q ss_pred CCcEEeccCCCCcccChhhhcccCCcEEEecCCccccc-chhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceec
Q 035853 302 LLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHT-PDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLH 380 (581)
Q Consensus 302 ~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~ 380 (581)
..+.++++++.++.+|..+ ..+|++|++++|.+..+ |..+..+++|++|++++|.+....+..+..+++|+.|++.+
T Consensus 10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4688999999999999877 48999999999999888 55688999999999999999855555578899999999988
Q ss_pred CC-Ccchh-hhCCCCCCCeEEEeeec
Q 035853 381 PS-SCTQD-ILGRLPSLQTFRVHENL 404 (581)
Q Consensus 381 ~~-~~~~~-~l~~l~~L~~L~l~~~~ 404 (581)
+. ..++. .+..+++|+.|+++++.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 88 55544 47788888888888885
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.88 E-value=5e-09 Score=94.12 Aligned_cols=100 Identities=18% Similarity=0.166 Sum_probs=83.2
Q ss_pred CcEEeccCCCCcccChhhhcccCCcEEEecCCccccc-chhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecC
Q 035853 303 LKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHT-PDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHP 381 (581)
Q Consensus 303 Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~ 381 (581)
-+.++++++.++.+|..+. .+|++|++++|.+..+ |..+..+++|++|++++|.+.+..+..++++++|+.|++.++
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 4789999999999998775 8999999999999888 456889999999999999988544444688999999999888
Q ss_pred C-Ccchhh-hCCCCCCCeEEEeeec
Q 035853 382 S-SCTQDI-LGRLPSLQTFRVHENL 404 (581)
Q Consensus 382 ~-~~~~~~-l~~l~~L~~L~l~~~~ 404 (581)
. ..++.. +..+++|+.|+++++.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred ccceeCHHHhccccCCCEEEeCCCC
Confidence 8 555554 7788888888888875
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.72 E-value=3.1e-08 Score=99.62 Aligned_cols=99 Identities=20% Similarity=0.119 Sum_probs=68.0
Q ss_pred EEEecCc-ccccCCCcccCcCCCcEEeccC-CCCcccC-hhhhcccCCcEEEecCCcccccch-hhhcCCCCcEeecCCc
Q 035853 282 LLDLGTI-VLDEYPAGINPLLLLKYLVLNI-PSLKHLP-SSLCNLLSLHTLDMRWSYIHHTPD-EIWKMNELRHLNFGSI 357 (581)
Q Consensus 282 ~L~L~~~-~l~~lp~~i~~l~~Lr~L~L~~-~~i~~lp-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~ 357 (581)
.++++++ .++.+|. ++.+.+|++|+|++ |.+..+| ..+++|.+|++|+|++|.+..+|. .+..+++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 3467776 6777777 77777778888875 7777666 457777778888887777766654 4577777888888777
Q ss_pred ccCCCCCCccCCCCCCcEeceecCC
Q 035853 358 TLPAHPGKCCSSLENLNFISVLHPS 382 (581)
Q Consensus 358 ~~~~~~p~~i~~l~~L~~L~l~~~~ 382 (581)
.+.+..+..+..++ |+.|++.++.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNP 114 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCC
Confidence 77633333333333 7777776665
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.3e-09 Score=110.44 Aligned_cols=156 Identities=15% Similarity=0.059 Sum_probs=84.0
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhc-cCCceeEEEecCcccc-c-CCCcccCcCCCcEEeccCCCCccc----
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICK-WFKFLRLLDLGTIVLD-E-YPAGINPLLLLKYLVLNIPSLKHL---- 316 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~Lr~L~L~~~~l~-~-lp~~i~~l~~Lr~L~L~~~~i~~l---- 316 (581)
.++++.|.+.++...... + ..+ ...+. ..++|+.|+|++|.++ . ...-...+.+|++|+|++|.++..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~-~-~~l---~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~ 145 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVK-C-TVV---AAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKD 145 (372)
T ss_dssp HTTCCEEECTTSCCCHHH-H-HHH---HHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHH
T ss_pred HhhCCEEEecCCCCCHHH-H-HHH---HHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHH
Confidence 456667777666543200 0 111 22222 2357777777777765 1 222223455777777777776521
Q ss_pred -Chhh-hcccCCcEEEecCCcccc-----cchhhhcCCCCcEeecCCcccCC----CCCCccCCCCCCcEeceecCC-C-
Q 035853 317 -PSSL-CNLLSLHTLDMRWSYIHH-----TPDEIWKMNELRHLNFGSITLPA----HPGKCCSSLENLNFISVLHPS-S- 383 (581)
Q Consensus 317 -p~~i-~~L~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~----~~p~~i~~l~~L~~L~l~~~~-~- 383 (581)
...+ ...++|++|+|++|.+.. ++..+..+++|++|++++|.+.. .++..+...++|++|++++|. .
T Consensus 146 L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 146 LRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp HHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred HHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 1222 235667777777776543 44455667777777777776542 122334445566666666655 1
Q ss_pred ----cchhhhCCCCCCCeEEEeeec
Q 035853 384 ----CTQDILGRLPSLQTFRVHENL 404 (581)
Q Consensus 384 ----~~~~~l~~l~~L~~L~l~~~~ 404 (581)
.+...+...++|+.|++++|.
T Consensus 226 ~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 226 TAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCC
Confidence 233334445556666666654
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.66 E-value=7.2e-09 Score=104.25 Aligned_cols=110 Identities=22% Similarity=0.269 Sum_probs=59.9
Q ss_pred CCCccEEEEeeccCCCCCccccc--CCCCCCeEEEecC--cccCce-e-----eeCCCCCCCCcEEEecCCCccccccc-
Q 035853 447 PPRLIELSLSNTELKYDPMPALE--KLPHLRVLKLKKN--SFFGRK-L-----VCSSGGFPSLKVMHLKSMFWLEEWTM- 515 (581)
Q Consensus 447 l~~L~~L~L~~~~l~~~~~~~l~--~l~~L~~L~L~~~--~~~~~~-~-----~~~~~~~~~L~~L~l~~~~~l~~l~~- 515 (581)
+++|++|+|..|.+.......++ .+|+|+.|+|+.+ ...+.. + ......||+|+.|.+.+|......+.
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~ 271 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM 271 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence 56677777776665444444443 5777777777521 111110 0 11123577777777777643221111
Q ss_pred --CcccccccceEeeccCcCCC----CCcccccCCCCccEEEeeCCC
Q 035853 516 --ENDAMPKLESLIINPCAYLK----ILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 516 --~~~~l~~L~~L~l~~c~~l~----~lp~~l~~l~~L~~L~l~~c~ 556 (581)
....+|+|++|+++.|.... .++.++.++++|+.|++++|+
T Consensus 272 la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp HHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 12357777777777664222 244455567777777777775
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.1e-09 Score=111.10 Aligned_cols=128 Identities=20% Similarity=0.172 Sum_probs=72.8
Q ss_pred CCceeEEEecCccccc-----CCCccc-CcCCCcEEeccCCCCcc--cChhhhcccCCcEEEecCCcccccc-----hhh
Q 035853 277 FKFLRLLDLGTIVLDE-----YPAGIN-PLLLLKYLVLNIPSLKH--LPSSLCNLLSLHTLDMRWSYIHHTP-----DEI 343 (581)
Q Consensus 277 ~~~Lr~L~L~~~~l~~-----lp~~i~-~l~~Lr~L~L~~~~i~~--lp~~i~~L~~L~~L~l~~~~l~~lp-----~~i 343 (581)
+++|+.|++++|.++. +...+. ...+|++|+|++|.+.. +..-...+.+|+.|+|++|.+.... ..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4678899999988762 222222 23688899999888762 2222345678888888888764432 222
Q ss_pred -hcCCCCcEeecCCcccCC----CCCCccCCCCCCcEeceecCC------CcchhhhCCCCCCCeEEEeeec
Q 035853 344 -WKMNELRHLNFGSITLPA----HPGKCCSSLENLNFISVLHPS------SCTQDILGRLPSLQTFRVHENL 404 (581)
Q Consensus 344 -~~l~~L~~L~l~~~~~~~----~~p~~i~~l~~L~~L~l~~~~------~~~~~~l~~l~~L~~L~l~~~~ 404 (581)
...++|+.|++++|.+.. .++..+...++|++|++++|. ..+...+...++|+.|++++|.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 235678888888776642 122223344555555555554 1123333444445555555443
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.6e-06 Score=88.58 Aligned_cols=278 Identities=12% Similarity=0.059 Sum_probs=152.3
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCC-CcccCcCCCcEEeccCCCCcc-------
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYP-AGINPLLLLKYLVLNIPSLKH------- 315 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~------- 315 (581)
+.+|+++.+...-. ... ...|.+|.+|+.+++..+ ++.++ ..+..+..|+.+.+..+ +..
T Consensus 70 c~~L~~i~lp~~i~-------~I~---~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~ 137 (394)
T 4fs7_A 70 CRKVTEIKIPSTVR-------EIG---EFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFK 137 (394)
T ss_dssp CTTEEEEECCTTCC-------EEC---TTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred CCCceEEEeCCCcc-------Ccc---hhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeee
Confidence 67777777754321 122 467778888888887644 44333 33555666665554332 111
Q ss_pred ---------------c-ChhhhcccCCcEEEecCCcccccchh-hhcCCCCcEeecCCcccCCCCCCccCCCCCCcEece
Q 035853 316 ---------------L-PSSLCNLLSLHTLDMRWSYIHHTPDE-IWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISV 378 (581)
Q Consensus 316 ---------------l-p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l 378 (581)
+ ...+.++.+|+.+.+..+ +..++.. +..+.+|+.+++..+ +.......+.++..|+.+.+
T Consensus 138 ~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~ 215 (394)
T 4fs7_A 138 GCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEF 215 (394)
T ss_dssp TCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCC
T ss_pred cccccccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeec
Confidence 1 123455666666666543 3334332 445666666655443 11112233455566666554
Q ss_pred ecCCCcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccccCC--CCCCCCCccEEEEe
Q 035853 379 LHPSSCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVLP--EYQFPPRLIELSLS 456 (581)
Q Consensus 379 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l~lp--~~~~l~~L~~L~L~ 456 (581)
......+........+|+.+.+... ....-...+..+.+|+.+.+..+- ..++ .+..++.++.+...
T Consensus 216 ~~~~~~i~~~~~~~~~l~~i~ip~~---~~~i~~~~f~~~~~l~~~~~~~~~--------~~i~~~~F~~~~~l~~~~~~ 284 (394)
T 4fs7_A 216 PNSLYYLGDFALSKTGVKNIIIPDS---FTELGKSVFYGCTDLESISIQNNK--------LRIGGSLFYNCSGLKKVIYG 284 (394)
T ss_dssp CTTCCEECTTTTTTCCCCEEEECTT---CCEECSSTTTTCSSCCEEEECCTT--------CEECSCTTTTCTTCCEEEEC
T ss_pred CCCceEeehhhcccCCCceEEECCC---ceecccccccccccceeEEcCCCc--------ceeeccccccccccceeccC
Confidence 4333222223334456666666433 111222345566677777765411 1333 45667777777665
Q ss_pred eccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccc-cCcccccccceEeeccCcCCC
Q 035853 457 NTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWT-MENDAMPKLESLIINPCAYLK 535 (581)
Q Consensus 457 ~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~ 535 (581)
...+. ...+..+.+|+.+.+.++ +. ..-...+.++.+|+.+.+.. .++.+. ..+..|++|+.+.+..+ ++
T Consensus 285 ~~~i~---~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~ 355 (394)
T 4fs7_A 285 SVIVP---EKTFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LR 355 (394)
T ss_dssp SSEEC---TTTTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CC
T ss_pred ceeec---cccccccccccccccccc-cc-eechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc--cc
Confidence 54321 234667788888888632 21 11123456677888888864 366664 34667888888888654 55
Q ss_pred CCcc-cccCCCCccEEEeeCC
Q 035853 536 ILPE-ELWRIKSLTKLELWWP 555 (581)
Q Consensus 536 ~lp~-~l~~l~~L~~L~l~~c 555 (581)
.++. .+.+|++|+++++...
T Consensus 356 ~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 356 KIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp EECTTTBTTCTTCCEEEEEGG
T ss_pred EehHHHhhCCCCCCEEEECCC
Confidence 5543 5778888888888654
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.52 E-value=1.2e-07 Score=95.32 Aligned_cols=100 Identities=17% Similarity=0.059 Sum_probs=85.7
Q ss_pred cEEeccCC-CCcccChhhhcccCCcEEEecC-Ccccccch-hhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceec
Q 035853 304 KYLVLNIP-SLKHLPSSLCNLLSLHTLDMRW-SYIHHTPD-EIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLH 380 (581)
Q Consensus 304 r~L~L~~~-~i~~lp~~i~~L~~L~~L~l~~-~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~ 380 (581)
..++++++ .++.+|. +..+.+|++|+|++ |.+..+|. .++.+++|++|+|++|.+.+..|..|+++++|+.|++++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 45688887 8999999 99999999999996 89999884 588999999999999999877777889999999999999
Q ss_pred CC-CcchhhhCCCCCCCeEEEeeec
Q 035853 381 PS-SCTQDILGRLPSLQTFRVHENL 404 (581)
Q Consensus 381 ~~-~~~~~~l~~l~~L~~L~l~~~~ 404 (581)
+. ..++..+.....|+.|++.++.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred CccceeCHHHcccCCceEEEeeCCC
Confidence 98 6666554433349999999886
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.4e-06 Score=89.05 Aligned_cols=293 Identities=12% Similarity=0.053 Sum_probs=182.4
Q ss_pred CCeeEEEEEecccCCCccccc--CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCc------------
Q 035853 223 EDFKRISVCRTVTNFDSWEHF--DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTI------------ 288 (581)
Q Consensus 223 ~~~r~lsl~~~~~~~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~------------ 288 (581)
.+++.+.+. +.....-...+ +++|+++.+.++-. ... ...|..+..|+.+.+..+
T Consensus 71 ~~L~~i~lp-~~i~~I~~~aF~~c~~L~~i~lp~~l~-------~I~---~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~ 139 (394)
T 4fs7_A 71 RKVTEIKIP-STVREIGEFAFENCSKLEIINIPDSVK-------MIG---RCTFSGCYALKSILLPLMLKSIGVEAFKGC 139 (394)
T ss_dssp TTEEEEECC-TTCCEECTTTTTTCTTCCEECCCTTCC-------EEC---TTTTTTCTTCCCCCCCTTCCEECTTTTTTC
T ss_pred CCceEEEeC-CCccCcchhHhhCCCCCcEEEeCCCce-------Ecc---chhhcccccchhhcccCceeeecceeeecc
Confidence 455666655 43322112233 67888887754321 122 355666666655544321
Q ss_pred c---------cccC-CCcccCcCCCcEEeccCCCCcccC-hhhhcccCCcEEEecCCcccccch-hhhcCCCCcEeecCC
Q 035853 289 V---------LDEY-PAGINPLLLLKYLVLNIPSLKHLP-SSLCNLLSLHTLDMRWSYIHHTPD-EIWKMNELRHLNFGS 356 (581)
Q Consensus 289 ~---------l~~l-p~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~ 356 (581)
. ...+ ...+.++.+|+.+.+..+ +..++ ..+.++.+|+.+.+..+ +..++. .+..+..|+.+.+..
T Consensus 140 ~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 140 DFKEITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPN 217 (394)
T ss_dssp CCSEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred cccccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCC
Confidence 1 1111 234677889999999764 34444 45778899999988765 555554 356788888887665
Q ss_pred cccCCCCCCccCCCCCCcEeceecCCCc-chhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCC
Q 035853 357 ITLPAHPGKCCSSLENLNFISVLHPSSC-TQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQ 435 (581)
Q Consensus 357 ~~~~~~~p~~i~~l~~L~~L~l~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~ 435 (581)
+.. .+........+|+.+.+...... ....+..+.+|+.+.+... ........+..+..++.+....
T Consensus 218 ~~~--~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~---~~~i~~~~F~~~~~l~~~~~~~------- 285 (394)
T 4fs7_A 218 SLY--YLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNN---KLRIGGSLFYNCSGLKKVIYGS------- 285 (394)
T ss_dssp TCC--EECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCT---TCEECSCTTTTCTTCCEEEECS-------
T ss_pred Cce--EeehhhcccCCCceEEECCCceecccccccccccceeEEcCCC---cceeeccccccccccceeccCc-------
Confidence 433 22333344567777776443322 2234567888998888765 2333345566777888776654
Q ss_pred cccccCC--CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCccccc
Q 035853 436 PSSIVLP--EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEW 513 (581)
Q Consensus 436 ~l~l~lp--~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 513 (581)
..+| .+..+.+|+.+.+..+ ++.-....+.++.+|+.+.+..+ +. ..-...+.++.+|+.+.+.. +++.+
T Consensus 286 ---~~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~--~l~~I 357 (394)
T 4fs7_A 286 ---VIVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPL--SLRKI 357 (394)
T ss_dssp ---SEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCT--TCCEE
T ss_pred ---eeeccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECc--cccEe
Confidence 2334 4677899999998764 33333456888999999999632 21 22234567788999999875 36666
Q ss_pred c-cCcccccccceEeeccCcCCCCCcccccCCCCccEE
Q 035853 514 T-MENDAMPKLESLIINPCAYLKILPEELWRIKSLTKL 550 (581)
Q Consensus 514 ~-~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L 550 (581)
. ..+..|++|+.+++..+ ++.+...+.++++|+.+
T Consensus 358 ~~~aF~~C~~L~~i~lp~~--~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 358 GANAFQGCINLKKVELPKR--LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp CTTTBTTCTTCCEEEEEGG--GGGGGGGBCTTCEEEEE
T ss_pred hHHHhhCCCCCCEEEECCC--CEEhhheecCCCCCcEE
Confidence 4 35778999999999754 45555678888888876
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.47 E-value=2.9e-08 Score=99.83 Aligned_cols=15 Identities=27% Similarity=0.197 Sum_probs=9.3
Q ss_pred hccCCceeEEEecCc
Q 035853 274 CKWFKFLRLLDLGTI 288 (581)
Q Consensus 274 ~~~~~~Lr~L~L~~~ 288 (581)
..++++|+.|.+.+.
T Consensus 135 ~~~l~~L~~L~l~~~ 149 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDI 149 (362)
T ss_dssp HHHHTTCSEEEECCC
T ss_pred hhhcchhhheeecCc
Confidence 445667777766543
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.29 E-value=4.9e-07 Score=79.99 Aligned_cols=88 Identities=13% Similarity=0.038 Sum_probs=50.7
Q ss_pred CCccEEEEeeccCCCCCcccccCCCCCCeEEEecCc-ccCceeeeCCCC----CCCCcEEEecCCCcccccc-cCccccc
Q 035853 448 PRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNS-FFGRKLVCSSGG----FPSLKVMHLKSMFWLEEWT-MENDAMP 521 (581)
Q Consensus 448 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~~~~~----~~~L~~L~l~~~~~l~~l~-~~~~~l~ 521 (581)
.+|+.|++++|.++...+..+.++++|+.|+|++|. +++..+.. +.. .++|++|+|++|+.+++-- ..+..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~-L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLER-LSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHH-HHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHH-HHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 467888888877766666667777777777777764 33332211 111 2356666666665555321 1134466
Q ss_pred ccceEeeccCcCCCC
Q 035853 522 KLESLIINPCAYLKI 536 (581)
Q Consensus 522 ~L~~L~l~~c~~l~~ 536 (581)
+|++|++++|+.++.
T Consensus 140 ~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCEEEEESCTTCCC
T ss_pred CCCEEECCCCCCCCc
Confidence 666666666665543
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00011 Score=74.79 Aligned_cols=282 Identities=11% Similarity=0.026 Sum_probs=156.5
Q ss_pred cccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcc---cccCC-CcccCcCCCcEEeccCCCCcccC-hhh
Q 035853 246 YLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIV---LDEYP-AGINPLLLLKYLVLNIPSLKHLP-SSL 320 (581)
Q Consensus 246 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~---l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp-~~i 320 (581)
.|+++.+-..-. ... ...|.++.+|+.+.+..+. ++.+. ..|..+.+|+.+.+..+ ++.++ ..+
T Consensus 65 ~L~sI~iP~svt-------~Ig---~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF 133 (394)
T 4gt6_A 65 VLTSVQIPDTVT-------EIG---SNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF 133 (394)
T ss_dssp CCCEEEECTTCC-------EEC---TTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred cCEEEEECCCee-------EEh---HHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence 477777754322 122 5778888888888887653 44443 34667778887776653 44444 345
Q ss_pred hcccCCcEEEecCCcccccch-hhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeE
Q 035853 321 CNLLSLHTLDMRWSYIHHTPD-EIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTF 398 (581)
Q Consensus 321 ~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L 398 (581)
..+.+|+.+.+... +..++. .+..+.+|+.+.+..+-. .+....-...+|+.+.+.... ......+..+.++...
T Consensus 134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~~~--~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~ 210 (394)
T 4gt6_A 134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDSVT--AIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTI 210 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTTCC--EECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEE
T ss_pred hhhcccccccccce-eeeecccceecccccccccccceee--EeccccccccceeEEEECCcccccccchhhhcccccee
Confidence 67788888887653 444443 345677777776654321 222221123456666544332 2222334455566655
Q ss_pred EEeeecccchhc-h----------hhhcCCCCCCCEEEeecCCcccCCcccc-cCC--CCCCCCCccEEEEeeccCCCCC
Q 035853 399 RVHENLSSYQSM-L----------SNNLCPLLHLESLKLVDERTIALQPSSI-VLP--EYQFPPRLIELSLSNTELKYDP 464 (581)
Q Consensus 399 ~l~~~~~~~~~~-l----------~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp--~~~~l~~L~~L~L~~~~l~~~~ 464 (581)
............ + .........+..+.+.. + + .+. .+..+.+|+.+.+.... ..-.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~--------v~~i~~~aF~~c~~L~~i~lp~~~-~~I~ 280 (394)
T 4gt6_A 211 TSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-G--------VARIETHAFDSCAYLASVKMPDSV-VSIG 280 (394)
T ss_dssp EECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-T--------EEEECTTTTTTCSSCCEEECCTTC-CEEC
T ss_pred cccccccccccceeecccccccccccccccccccceEEcCC-c--------ceEcccceeeecccccEEeccccc-ceec
Confidence 444322000000 0 00001111222222221 0 2 222 36677888888876542 2222
Q ss_pred cccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccc-cCcccccccceEeeccCcCCCCCcc-ccc
Q 035853 465 MPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWT-MENDAMPKLESLIINPCAYLKILPE-ELW 542 (581)
Q Consensus 465 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~-~l~ 542 (581)
...+.++++|+.+.+. +.+. ......+.++.+|+.+.|.. +++.+. ..+..|.+|+.+.|-.. ++.++. .+.
T Consensus 281 ~~aF~~c~~L~~i~l~-~~i~-~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~ 354 (394)
T 4gt6_A 281 TGAFMNCPALQDIEFS-SRIT-ELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPSS--VTKIPESAFS 354 (394)
T ss_dssp TTTTTTCTTCCEEECC-TTCC-EECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECTT--CCBCCGGGGT
T ss_pred CcccccccccccccCC-Cccc-ccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECcc--cCEEhHhHhh
Confidence 3456778888888885 2221 22233466778888888865 466664 34677888998888643 566654 578
Q ss_pred CCCCccEEEeeCCCH
Q 035853 543 RIKSLTKLELWWPRF 557 (581)
Q Consensus 543 ~l~~L~~L~l~~c~~ 557 (581)
+|++|+.+++.++..
T Consensus 355 ~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 355 NCTALNNIEYSGSRS 369 (394)
T ss_dssp TCTTCCEEEESSCHH
T ss_pred CCCCCCEEEECCcee
Confidence 888999998888763
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.18 E-value=4.5e-05 Score=77.78 Aligned_cols=300 Identities=11% Similarity=0.060 Sum_probs=174.7
Q ss_pred eeEEEEEecccCCCccccc--CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCC-CcccCcC
Q 035853 225 FKRISVCRTVTNFDSWEHF--DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYP-AGINPLL 301 (581)
Q Consensus 225 ~r~lsl~~~~~~~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~l~ 301 (581)
+..+.+. +.....-...+ +++|+++.+..+....+. ... ...|..+.+|+.+.+..+ ++.++ ..+..+.
T Consensus 66 L~sI~iP-~svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~---~Ig---~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~ 137 (394)
T 4gt6_A 66 LTSVQIP-DTVTEIGSNAFYNCTSLKRVTIQDNKPSCVK---KIG---RQAFMFCSELTDIPILDS-VTEIDSEAFHHCE 137 (394)
T ss_dssp CCEEEEC-TTCCEECTTTTTTCTTCCEEEEGGGCCCCCC---EEC---TTTTTTCTTCCBCGGGTT-CSEECTTTTTTCT
T ss_pred CEEEEEC-CCeeEEhHHHhhCCccCceEeecCCCCCeee---Eec---hhhchhcccceeeccCCc-cceehhhhhhhhc
Confidence 5666665 44333222334 789999998765322111 122 467888888887776544 44333 4567888
Q ss_pred CCcEEeccCCCCcccC-hhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceec
Q 035853 302 LLKYLVLNIPSLKHLP-SSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLH 380 (581)
Q Consensus 302 ~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~ 380 (581)
+|+.+.+..+ +..++ ..+..+..|+.+.+..+ +..+........+|+.+.+..+... .....+..+.++.......
T Consensus 138 ~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~ 214 (394)
T 4gt6_A 138 ELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVTR-IGTNAFSECFALSTITSDS 214 (394)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECC
T ss_pred ccccccccce-eeeecccceecccccccccccce-eeEeccccccccceeEEEECCcccc-cccchhhhccccceecccc
Confidence 9999999754 34333 45678889999988764 5555554444567888876543221 2223455666666655333
Q ss_pred CC-Ccch--------------hhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC--
Q 035853 381 PS-SCTQ--------------DILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP-- 442 (581)
Q Consensus 381 ~~-~~~~--------------~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp-- 442 (581)
.. .... ........+..+.+... ....-...+..+.+|+.+.+... + .+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~---v~~i~~~aF~~c~~L~~i~lp~~---------~~~I~~~ 282 (394)
T 4gt6_A 215 ESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG---VARIETHAFDSCAYLASVKMPDS---------VVSIGTG 282 (394)
T ss_dssp SSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT---EEEECTTTTTTCSSCCEEECCTT---------CCEECTT
T ss_pred cccccccceeecccccccccccccccccccceEEcCCc---ceEcccceeeecccccEEecccc---------cceecCc
Confidence 22 0000 00111122233322211 12222346778888998888651 2 444
Q ss_pred CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccc-cCccccc
Q 035853 443 EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWT-MENDAMP 521 (581)
Q Consensus 443 ~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~ 521 (581)
.+..+++|+.+.+... ++.-....+.+|.+|+.+.|..+ +. ..-...+.++.+|+.+.|.. +++.+. ..+..|+
T Consensus 283 aF~~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~ 357 (394)
T 4gt6_A 283 AFMNCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCT 357 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCT
T ss_pred ccccccccccccCCCc-ccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCC
Confidence 5678899999988643 33333456888999999999743 21 12233577889999999965 466664 3577899
Q ss_pred ccceEeeccCcCCCCCcccccCCCCccEEEeeCC
Q 035853 522 KLESLIINPCAYLKILPEELWRIKSLTKLELWWP 555 (581)
Q Consensus 522 ~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 555 (581)
+|+.+++.++... . ..+..+.+|+.+.+...
T Consensus 358 ~L~~i~~~~~~~~--~-~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 358 ALNNIEYSGSRSQ--W-NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp TCCEEEESSCHHH--H-HTCBCCCCC--------
T ss_pred CCCEEEECCceee--h-hhhhccCCCCEEEeCCC
Confidence 9999999886422 1 34566788888877544
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=8.1e-07 Score=80.39 Aligned_cols=90 Identities=16% Similarity=0.097 Sum_probs=58.3
Q ss_pred HHHhccCCceeEEEecCc-ccc-----cCCCcccCcCCCcEEeccCCCCc-----ccChhhhcccCCcEEEecCCcccc-
Q 035853 271 NAICKWFKFLRLLDLGTI-VLD-----EYPAGINPLLLLKYLVLNIPSLK-----HLPSSLCNLLSLHTLDMRWSYIHH- 338 (581)
Q Consensus 271 ~~~~~~~~~Lr~L~L~~~-~l~-----~lp~~i~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~l~~- 338 (581)
...+...+.|+.|+|++| .+. .+...+...++|++|+|++|.+. .+...+...++|++|+|++|.+..
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 456677777888888877 654 23344555677777777777765 244455566777777777776543
Q ss_pred ----cchhhhcCCCCcEeec--CCcccC
Q 035853 339 ----TPDEIWKMNELRHLNF--GSITLP 360 (581)
Q Consensus 339 ----lp~~i~~l~~L~~L~l--~~~~~~ 360 (581)
+...+...++|++|++ ++|.+.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 4455556666777777 555543
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.02 E-value=4e-06 Score=75.74 Aligned_cols=112 Identities=12% Similarity=0.001 Sum_probs=85.5
Q ss_pred CCcccEEEEecc-cccccccchhhhhhhHHHhccCCceeEEEecCcccc-----cCCCcccCcCCCcEEeccCCCCc---
Q 035853 244 DTYLHSFLHLTV-ERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLD-----EYPAGINPLLLLKYLVLNIPSLK--- 314 (581)
Q Consensus 244 ~~~Lr~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~-----~lp~~i~~l~~Lr~L~L~~~~i~--- 314 (581)
.+.+++|.+.++ .... ... ..+ ...+...+.|++|+|++|.+. .+...+...+.|++|+|++|.|.
T Consensus 35 ~~~L~~L~L~~n~~i~~-~g~-~~l---~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPV-PTL-KAC---AEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp CTTCCEEECTTCTTCCH-HHH-HHH---HHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred CCCCCEEEecCCCCCCH-HHH-HHH---HHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 678899999887 5532 111 223 566778899999999999986 24455666789999999999987
Q ss_pred --ccChhhhcccCCcEEEe--cCCcccc-----cchhhhcCCCCcEeecCCcccC
Q 035853 315 --HLPSSLCNLLSLHTLDM--RWSYIHH-----TPDEIWKMNELRHLNFGSITLP 360 (581)
Q Consensus 315 --~lp~~i~~L~~L~~L~l--~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~ 360 (581)
.+...+...+.|++|++ ++|.+.. +...+...++|++|++++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 36677888899999999 7787743 5566677899999999988763
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.94 E-value=4.6e-06 Score=73.73 Aligned_cols=83 Identities=11% Similarity=0.135 Sum_probs=65.6
Q ss_pred CCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCccccccc-Cccc----ccccceEeeccCcCCCC--CcccccCC
Q 035853 472 PHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTM-ENDA----MPKLESLIINPCAYLKI--LPEELWRI 544 (581)
Q Consensus 472 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~----l~~L~~L~l~~c~~l~~--lp~~l~~l 544 (581)
..|+.|++++|.++...+.. +.++++|++|+|++|..++.... .+.. +++|++|+|++|+.++. + ..+.++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDH-MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGG-GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGC
T ss_pred ceEeEEeCcCCCccHHHHHH-hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcC
Confidence 46999999999877766443 47899999999999988875321 1222 46899999999997763 3 346789
Q ss_pred CCccEEEeeCCC
Q 035853 545 KSLTKLELWWPR 556 (581)
Q Consensus 545 ~~L~~L~l~~c~ 556 (581)
++|++|++++||
T Consensus 139 ~~L~~L~L~~c~ 150 (176)
T 3e4g_A 139 RNLKYLFLSDLP 150 (176)
T ss_dssp TTCCEEEEESCT
T ss_pred CCCCEEECCCCC
Confidence 999999999998
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00035 Score=70.63 Aligned_cols=60 Identities=7% Similarity=-0.025 Sum_probs=26.4
Q ss_pred HHHhccCCceeEEEecCcccccCC-CcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecC
Q 035853 271 NAICKWFKFLRLLDLGTIVLDEYP-AGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRW 333 (581)
Q Consensus 271 ~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~ 333 (581)
...|.+|.+|+.+.+..+ ++.+. ..+.++ .|..+.+.. .++.++...-...+|+.+.+..
T Consensus 62 ~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~~L~~i~lp~ 122 (379)
T 4h09_A 62 EANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGTDLDDFEFPG 122 (379)
T ss_dssp TTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTCCCSEEECCT
T ss_pred HHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc-eeeEeccceeccCCcccccCCC
Confidence 355666666666666432 33333 223333 344444432 2333332222223555555543
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.72 E-value=3.1e-05 Score=73.71 Aligned_cols=77 Identities=19% Similarity=0.046 Sum_probs=41.1
Q ss_pred ccCCceeEEEecCcccccC---CCcccCcCCCcEEeccCCCCcccChhhhccc--CCcEEEecCCccc-ccc-------h
Q 035853 275 KWFKFLRLLDLGTIVLDEY---PAGINPLLLLKYLVLNIPSLKHLPSSLCNLL--SLHTLDMRWSYIH-HTP-------D 341 (581)
Q Consensus 275 ~~~~~Lr~L~L~~~~l~~l---p~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~--~L~~L~l~~~~l~-~lp-------~ 341 (581)
.++++|+.|+|++|.++.+ |..+..+++|++|+|++|.|+.+ ..+..+. +|++|+|++|.+. .+| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 4556666666666665532 23444566666666666666544 2334444 5666666666442 232 1
Q ss_pred hhhcCCCCcEe
Q 035853 342 EIWKMNELRHL 352 (581)
Q Consensus 342 ~i~~l~~L~~L 352 (581)
.+..+++|+.|
T Consensus 246 il~~~P~L~~L 256 (267)
T 3rw6_A 246 IRERFPKLLRL 256 (267)
T ss_dssp HHHHCTTCCEE
T ss_pred HHHHCcccCeE
Confidence 23455566655
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.68 E-value=3e-05 Score=73.84 Aligned_cols=81 Identities=16% Similarity=0.083 Sum_probs=56.0
Q ss_pred cCcCCCcEEeccCCCCcc---cChhhhcccCCcEEEecCCcccccchhhhcCC--CCcEeecCCcccCCCCCC-------
Q 035853 298 NPLLLLKYLVLNIPSLKH---LPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMN--ELRHLNFGSITLPAHPGK------- 365 (581)
Q Consensus 298 ~~l~~Lr~L~L~~~~i~~---lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~--~L~~L~l~~~~~~~~~p~------- 365 (581)
.++++|+.|+|++|.+.. +|..++.+++|+.|+|++|.+..+. .+..+. +|+.|++++|.+.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 356788888888888774 4456678888888888888777663 344455 788888888887655542
Q ss_pred ccCCCCCCcEecee
Q 035853 366 CCSSLENLNFISVL 379 (581)
Q Consensus 366 ~i~~l~~L~~L~l~ 379 (581)
.+..+++|+.|+..
T Consensus 246 il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 246 IRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHCTTCCEESSC
T ss_pred HHHHCcccCeECCc
Confidence 24556667666643
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.002 Score=64.98 Aligned_cols=276 Identities=8% Similarity=-0.021 Sum_probs=132.6
Q ss_pred CCeeEEEEEecccCCCccccc--CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccCc
Q 035853 223 EDFKRISVCRTVTNFDSWEHF--DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPL 300 (581)
Q Consensus 223 ~~~r~lsl~~~~~~~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l 300 (581)
.+++.+.+. +.....-...+ +.+|+++.+...-. . .. ...|..+ .|..+.+..+ ++.+.......
T Consensus 46 ~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~v~-~------Ig---~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~ 112 (379)
T 4h09_A 46 DRISEVRVN-SGITSIGEANFNSCYNMTKVTVASTVT-S------IG---DGAFADT-KLQSYTGMER-VKKFGDYVFQG 112 (379)
T ss_dssp GGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECTTCC-E------EC---TTTTTTC-CCCEEEECTT-CCEECTTTTTT
T ss_pred cCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCCcce-E------ec---hhhhcCC-CCceEECCce-eeEeccceecc
Confidence 456777776 54433222334 78999999865422 1 22 4667777 4666655432 44444332233
Q ss_pred CCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccch-hhhcCCCCcEeecCCcccCC------------CCCCcc
Q 035853 301 LLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPD-EIWKMNELRHLNFGSITLPA------------HPGKCC 367 (581)
Q Consensus 301 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~------------~~p~~i 367 (581)
.+|+.+.+..+ +..+....-.-.+|+...+..+ +..+.. .+..+.+++...+..+.... .....+
T Consensus 113 ~~L~~i~lp~~-~~~i~~~~F~~~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (379)
T 4h09_A 113 TDLDDFEFPGA-TTEIGNYIFYNSSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESY 190 (379)
T ss_dssp CCCSEEECCTT-CCEECTTTTTTCCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEEC
T ss_pred CCcccccCCCc-cccccccccccceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccc
Confidence 47888888664 3333322222234555555433 222222 23455666666554322110 011112
Q ss_pred CCCCCCcEeceecCC-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC--C
Q 035853 368 SSLENLNFISVLHPS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP--E 443 (581)
Q Consensus 368 ~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp--~ 443 (581)
.....+....+.... ......+..+.+|+.+.+... ....-...+..+.+|+.+.+..+ + .+. .
T Consensus 191 ~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~---~~~i~~~~f~~~~~L~~i~lp~~---------v~~I~~~a 258 (379)
T 4h09_A 191 PAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG---VTTLGDGAFYGMKALDEIAIPKN---------VTSIGSFL 258 (379)
T ss_dssp CTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT---CCEECTTTTTTCSSCCEEEECTT---------CCEECTTT
T ss_pred cccccccccccccceeEEeecccccccccceeeeccc---eeEEccccccCCccceEEEcCCC---------ccEeCccc
Confidence 222333333222211 111223344555665555432 11222234455666666666431 2 333 4
Q ss_pred CCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCccccccc-Ccccccc
Q 035853 444 YQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTM-ENDAMPK 522 (581)
Q Consensus 444 ~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~ 522 (581)
+..+.+|+.+.+... +.......+.++++|+.+.+.++.+.. .-...+.++.+|+.+.|.. +++.+.. .+..|++
T Consensus 259 F~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~-I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~ 334 (379)
T 4h09_A 259 LQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIET-LEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKA 334 (379)
T ss_dssp TTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCE-ECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTT
T ss_pred cceeehhcccccccc-ceeccccccccccccccccccccccce-ehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCC
Confidence 556666777766543 222223345667777777776443321 1123455666777777653 3555533 3556666
Q ss_pred cceEeec
Q 035853 523 LESLIIN 529 (581)
Q Consensus 523 L~~L~l~ 529 (581)
|+.+.+.
T Consensus 335 L~~i~ip 341 (379)
T 4h09_A 335 LSTISYP 341 (379)
T ss_dssp CCCCCCC
T ss_pred CCEEEEC
Confidence 6666664
|
| >1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00047 Score=70.51 Aligned_cols=176 Identities=14% Similarity=0.062 Sum_probs=99.1
Q ss_pred HHHHHHHHhc--CceEEEEEEcCCCh--------hHHHHHHhhCCCC---C--CCCEEEEeCCC----------------
Q 035853 4 RKTALHDYLR--NKRYLIVFEDVISS--------DVWDYIGKALPDH---Q--NGSRVLAMLTC---------------- 52 (581)
Q Consensus 4 l~~~l~~~L~--~kr~LlVLDDv~~~--------~~~~~l~~~~~~~---~--~gs~iivTtr~---------------- 52 (581)
+...+.+.+. +++++|||||+|.. +.+..+...+... + ..-.||+||++
T Consensus 125 ~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~ 204 (412)
T 1w5s_A 125 ILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES 204 (412)
T ss_dssp HHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT
T ss_pred HHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh
Confidence 4455666665 78999999999774 3344333332211 2 33457777652
Q ss_pred ------------hHHHHHhc-ccccCcccc-CCCCChh-hHHhhcC------Ccchhhhhhccc--c---------c-ee
Q 035853 53 ------------SDEIFSLC-RLENGEMIH-LDSVPAG-PLRAKYQ------ERPLVFLYYGRN--S---------L-VE 99 (581)
Q Consensus 53 ------------~~~~~~Lf-~~f~~~~~~-~~~~~~~-~i~~~c~------GlPLal~~~g~~--t---------~-~~ 99 (581)
.++++++| +.++..... ..+.+.. .|+++|+ |.|..+..+... . + .+
T Consensus 205 ~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~ 284 (412)
T 1w5s_A 205 QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSED 284 (412)
T ss_dssp TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHH
T ss_pred hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 16777787 442211101 1114456 8889999 999755544332 0 0 00
Q ss_pred cccc-ccccc-ccceeccccCchhhhHHHHhhhcccC--CCceechHHHHHHHH--h---cCCCCCChHHHHHHHHHHHH
Q 035853 100 NMRL-TWRIQ-KWPLLFSIVELPQHLKLCCLYLSAFR--DAFEIATKELYQLWI--A---EGFIPDNSEKTAEEYLEQLI 170 (581)
Q Consensus 100 ~~~~-~~~~~-~~~L~~sY~~L~~~lk~cFl~~a~Fp--~~~~i~~~~Li~~w~--a---~g~i~~~~~~~~~~~~~~L~ 170 (581)
.+.. ..+.. ...+.-+++.||.+.+.++..+|.++ .+..++..++...+. + .|. ++-.......+++.|+
T Consensus 285 ~v~~~~~~~~~~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~L~ 363 (412)
T 1w5s_A 285 LVRKAVSENEAASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNV-KPRGYTQYHIYLKHLT 363 (412)
T ss_dssp HHHHHHHHC------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCC-CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHH
Confidence 0000 01111 13566788999999999999899765 334566666665552 2 121 1122345678899999
Q ss_pred hCCceeeeec
Q 035853 171 SRGFIKVKKR 180 (581)
Q Consensus 171 ~~~ll~~~~~ 180 (581)
+.+++.....
T Consensus 364 ~~gli~~~~~ 373 (412)
T 1w5s_A 364 SLGLVDAKPS 373 (412)
T ss_dssp HTTSEEEECC
T ss_pred hCCCEEeecc
Confidence 9999987653
|
| >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0034 Score=62.37 Aligned_cols=178 Identities=12% Similarity=0.027 Sum_probs=98.3
Q ss_pred HHHHHHHHhcC-ceEEEEEEcCCChh---------HHHHHHhhCCCCCCCCEEEEeCCCh--------------------
Q 035853 4 RKTALHDYLRN-KRYLIVFEDVISSD---------VWDYIGKALPDHQNGSRVLAMLTCS-------------------- 53 (581)
Q Consensus 4 l~~~l~~~L~~-kr~LlVLDDv~~~~---------~~~~l~~~~~~~~~gs~iivTtr~~-------------------- 53 (581)
+.+.+.+..+. ++++||+||++..+ .+..+....... ++.++|+|++..
T Consensus 116 ~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~ 194 (350)
T 2qen_A 116 VFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSL-PNLKIILTGSEVGLLHDFLKITDYESPLYGRI 194 (350)
T ss_dssp HHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHC-TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCC
T ss_pred HHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHhc-CCeEEEEECCcHHHHHHHHhhcCCCCccccCc
Confidence 34445554443 39999999997732 234444332222 467888885421
Q ss_pred -----------HHHHHhc-ccccCccccCCCCChh-hHHhhcCCcchhhhhhccccceec--cc-ccccc-c--ccceec
Q 035853 54 -----------DEIFSLC-RLENGEMIHLDSVPAG-PLRAKYQERPLVFLYYGRNSLVEN--MR-LTWRI-Q--KWPLLF 114 (581)
Q Consensus 54 -----------~~~~~Lf-~~f~~~~~~~~~~~~~-~i~~~c~GlPLal~~~g~~t~~~~--~~-~~~~~-~--~~~L~~ 114 (581)
+|+.+++ +.|+... ...+.+.. +|++.|+|.|+++..++.. .++. .. ...+. + ...+.-
T Consensus 195 ~~~i~l~pl~~~e~~~~l~~~~~~~~-~~~~~~~~~~i~~~tgG~P~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 272 (350)
T 2qen_A 195 AGEVLVKPFDKDTSVEFLKRGFREVN-LDVPENEIEEAVELLDGIPGWLVVFGVE-YLRNGDFGRAMKRTLEVAKGLIMG 272 (350)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHHTTT-CCCCHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred cceeeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhCCCHHHHHHHHHH-HhccccHhHHHHHHHHHHHHHHHH
Confidence 5566655 3243211 11114456 8999999999999988764 1110 00 00000 0 111111
Q ss_pred cccCc---hhhhHHHHhhhcccCCCceechHHHHHHHHhc-CCCCCChHHHHHHHHHHHHhCCceeeeeccCCCCEeEEE
Q 035853 115 SIVEL---PQHLKLCCLYLSAFRDAFEIATKELYQLWIAE-GFIPDNSEKTAEEYLEQLISRGFIKVKKRRAGGTIKTCY 190 (581)
Q Consensus 115 sY~~L---~~~lk~cFl~~a~Fp~~~~i~~~~Li~~w~a~-g~i~~~~~~~~~~~~~~L~~~~ll~~~~~~~~g~~~~~~ 190 (581)
.+..+ ++..+..+..+|+ + .++..++.....+. |-+ .......+++.|++.+++.... ..|.
T Consensus 273 ~l~~l~~~~~~~~~~l~~la~---g-~~~~~~l~~~~~~~~~~~---~~~~~~~~l~~L~~~gli~~~~-------~~y~ 338 (350)
T 2qen_A 273 ELEELRRRSPRYVDILRAIAL---G-YNRWSLIRDYLAVKGTKI---PEPRLYALLENLKKMNWIVEED-------NTYK 338 (350)
T ss_dssp HHHHHHHHCHHHHHHHHHHHT---T-CCSHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHTTSEEEET-------TEEE
T ss_pred HHHHHHhCChhHHHHHHHHHh---C-CCCHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhCCCEEecC-------CEEE
Confidence 12223 6788999999987 3 24556665554322 111 2345678999999999998752 2355
Q ss_pred e-ChHHHHH
Q 035853 191 I-SFITRGM 198 (581)
Q Consensus 191 m-Hdli~dl 198 (581)
+ |.++++.
T Consensus 339 ~~~p~~~~~ 347 (350)
T 2qen_A 339 IADPVVATV 347 (350)
T ss_dssp ESSHHHHHH
T ss_pred EecHHHHHH
Confidence 5 5566654
|
| >2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0057 Score=60.79 Aligned_cols=165 Identities=14% Similarity=0.010 Sum_probs=91.0
Q ss_pred ceEEEEEEcCCChh-----H-HHHHHhhCCCCCCCCEEEEeCCCh-------------------------------HHHH
Q 035853 15 KRYLIVFEDVISSD-----V-WDYIGKALPDHQNGSRVLAMLTCS-------------------------------DEIF 57 (581)
Q Consensus 15 kr~LlVLDDv~~~~-----~-~~~l~~~~~~~~~gs~iivTtr~~-------------------------------~~~~ 57 (581)
++++||+||++..+ + +..+...... .++.++|+|+|.. +|+.
T Consensus 137 ~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~-~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~ 215 (357)
T 2fna_A 137 DNVIIVLDEAQELVKLRGVNLLPALAYAYDN-LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAI 215 (357)
T ss_dssp SCEEEEEETGGGGGGCTTCCCHHHHHHHHHH-CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHH
T ss_pred CCeEEEEECHHHhhccCchhHHHHHHHHHHc-CCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHH
Confidence 49999999996631 2 3333322221 2367888887641 4444
Q ss_pred Hhc-ccccCccccCCCCChh-hHHhhcCCcchhhhhhccc-----cceeccc-ccccc----cccceecccc--Cchhhh
Q 035853 58 SLC-RLENGEMIHLDSVPAG-PLRAKYQERPLVFLYYGRN-----SLVENMR-LTWRI----QKWPLLFSIV--ELPQHL 123 (581)
Q Consensus 58 ~Lf-~~f~~~~~~~~~~~~~-~i~~~c~GlPLal~~~g~~-----t~~~~~~-~~~~~----~~~~L~~sY~--~L~~~l 123 (581)
+++ +.++... . ..+-. +|++.|+|.|+++..++.. +.++... ...+. ....-.+.|+ .||+..
T Consensus 216 ~~l~~~~~~~~--~-~~~~~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 292 (357)
T 2fna_A 216 EFLRRGFQEAD--I-DFKDYEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLILKEFENFLHGREIARKRY 292 (357)
T ss_dssp HHHHHHHHHHT--C-CCCCHHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHHcC--C-CCCcHHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHhhccccccHHH
Confidence 444 2232100 0 12224 7899999999999988765 0110000 00000 0111112221 688999
Q ss_pred HHHHhhhcccCCCceechHHHHHHHH-hcCC-CCCChHHHHHHHHHHHHhCCceeeeeccCCCCEeEEE-eChHHHHH
Q 035853 124 KLCCLYLSAFRDAFEIATKELYQLWI-AEGF-IPDNSEKTAEEYLEQLISRGFIKVKKRRAGGTIKTCY-ISFITRGM 198 (581)
Q Consensus 124 k~cFl~~a~Fp~~~~i~~~~Li~~w~-a~g~-i~~~~~~~~~~~~~~L~~~~ll~~~~~~~~g~~~~~~-mHdli~dl 198 (581)
+..+..+|+ |. +.+.+..... ..|. + .......+++.|++++++.... + .|. .|.++++.
T Consensus 293 ~~~l~~la~---g~--~~~~l~~~~~~~~g~~~---~~~~~~~~L~~L~~~gli~~~~----~---~y~f~~~~~~~~ 355 (357)
T 2fna_A 293 LNIMRTLSK---CG--KWSDVKRALELEEGIEI---SDSEIYNYLTQLTKHSWIIKEG----E---KYCPSEPLISLA 355 (357)
T ss_dssp HHHHHHHTT---CB--CHHHHHHHHHHHHCSCC---CHHHHHHHHHHHHHTTSEEESS----S---CEEESSHHHHHH
T ss_pred HHHHHHHHc---CC--CHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhCCCEEecC----C---EEEecCHHHHHh
Confidence 999999998 32 4555544321 2232 2 2345678999999999998653 2 255 46677764
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=95.08 E-value=0.016 Score=51.90 Aligned_cols=38 Identities=13% Similarity=0.137 Sum_probs=17.1
Q ss_pred CcCCCcEEeccCCCCc-----ccChhhhcccCCcEEEecCCcc
Q 035853 299 PLLLLKYLVLNIPSLK-----HLPSSLCNLLSLHTLDMRWSYI 336 (581)
Q Consensus 299 ~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~l 336 (581)
.-..|+.|+|++|.|. .+.+.+..-..|++|+|++|.+
T Consensus 68 ~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 68 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL 110 (197)
T ss_dssp TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence 3344555555555443 2233333344455555555543
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=94.98 E-value=0.04 Score=45.89 Aligned_cols=51 Identities=29% Similarity=0.318 Sum_probs=34.9
Q ss_pred EEEecCcccc--cCCCcccCcCCCcEEeccCCCCcccChh-hhcccCCcEEEecCC
Q 035853 282 LLDLGTIVLD--EYPAGINPLLLLKYLVLNIPSLKHLPSS-LCNLLSLHTLDMRWS 334 (581)
Q Consensus 282 ~L~L~~~~l~--~lp~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~ 334 (581)
+++.++..++ .+|..+. .+|++|+|++|.|+.+|.. +..+++|++|+|.+|
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 5667777776 7776554 3677777777777777643 466777777777766
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.038 Score=46.02 Aligned_cols=54 Identities=15% Similarity=0.205 Sum_probs=43.1
Q ss_pred cEEeccCCCCc--ccChhhhcccCCcEEEecCCcccccchh-hhcCCCCcEeecCCccc
Q 035853 304 KYLVLNIPSLK--HLPSSLCNLLSLHTLDMRWSYIHHTPDE-IWKMNELRHLNFGSITL 359 (581)
Q Consensus 304 r~L~L~~~~i~--~lp~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~ 359 (581)
..++.+++.++ .+|..+ -.+|++|+|++|.+..+|.+ +..+++|+.|+|++|.+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 47788888888 888654 35789999999999999876 46788899998888765
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=94.19 E-value=0.035 Score=51.35 Aligned_cols=79 Identities=14% Similarity=0.034 Sum_probs=55.3
Q ss_pred CceEEEEEEcCCC--hhHHHHHHhhCCCCCCCCEEEEeCCC---------------------hHHHHHhc-ccccCcccc
Q 035853 14 NKRYLIVFEDVIS--SDVWDYIGKALPDHQNGSRVLAMLTC---------------------SDEIFSLC-RLENGEMIH 69 (581)
Q Consensus 14 ~kr~LlVLDDv~~--~~~~~~l~~~~~~~~~gs~iivTtr~---------------------~~~~~~Lf-~~f~~~~~~ 69 (581)
+++.+||+||++. ...++.+...+.....+.++|+||+. .+|..+++ +.+.... .
T Consensus 125 ~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~-~ 203 (250)
T 1njg_A 125 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEH-I 203 (250)
T ss_dssp SSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTT-C
T ss_pred CCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcC-C
Confidence 4689999999965 46778887777665667889998765 17888888 5443221 1
Q ss_pred CCCCChh-hHHhhcCCcchhhhhhc
Q 035853 70 LDSVPAG-PLRAKYQERPLVFLYYG 93 (581)
Q Consensus 70 ~~~~~~~-~i~~~c~GlPLal~~~g 93 (581)
.-+.+.. .|+++|+|.|..+..+.
T Consensus 204 ~~~~~~~~~l~~~~~G~~~~~~~~~ 228 (250)
T 1njg_A 204 AHEPRALQLLARAAEGSLRDALSLT 228 (250)
T ss_dssp CBCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1114455 89999999998877654
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=94.18 E-value=0.044 Score=49.09 Aligned_cols=43 Identities=23% Similarity=0.203 Sum_probs=20.2
Q ss_pred hhhhcccCCcEEEecCCccc-----ccchhhhcCCCCcEeecCCcccC
Q 035853 318 SSLCNLLSLHTLDMRWSYIH-----HTPDEIWKMNELRHLNFGSITLP 360 (581)
Q Consensus 318 ~~i~~L~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~ 360 (581)
+.+..-..|+.|+|++|.+. .+...+..-+.|++|+|+.|.+.
T Consensus 64 ~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 64 EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 33444445555555555442 22233334455555555555543
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=93.22 E-value=0.48 Score=47.17 Aligned_cols=176 Identities=13% Similarity=0.073 Sum_probs=95.5
Q ss_pred HHHHHHHHh--cCceEEEEEEcCCChh----HHHHHHhhCCCC-----CCCCEEEEeCCC--------------------
Q 035853 4 RKTALHDYL--RNKRYLIVFEDVISSD----VWDYIGKALPDH-----QNGSRVLAMLTC-------------------- 52 (581)
Q Consensus 4 l~~~l~~~L--~~kr~LlVLDDv~~~~----~~~~l~~~~~~~-----~~gs~iivTtr~-------------------- 52 (581)
+.+.+.+.+ .+++.+|||||++... ..+.+...+.+. ..+..+|.||+.
T Consensus 117 ~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i 196 (387)
T 2v1u_A 117 VYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVEL 196 (387)
T ss_dssp HHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEEC
T ss_pred HHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEE
Confidence 345556666 3568999999998753 223333222211 345677777653
Q ss_pred ------hHHHHHhc-ccccCccccCCC-CChh-hHHhhcC---Ccc-hhhhhhccc-c---------ce-ecccc-cccc
Q 035853 53 ------SDEIFSLC-RLENGEMIHLDS-VPAG-PLRAKYQ---ERP-LVFLYYGRN-S---------LV-ENMRL-TWRI 107 (581)
Q Consensus 53 ------~~~~~~Lf-~~f~~~~~~~~~-~~~~-~i~~~c~---GlP-Lal~~~g~~-t---------~~-~~~~~-~~~~ 107 (581)
.++..+++ +.+........- .+.. .++++++ |.| .|+.++..+ . +. +.+.. ..+.
T Consensus 197 ~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 197 VFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp CBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 07777777 443321001111 5556 7888887 999 444444333 0 00 00000 0000
Q ss_pred cccceeccccCchhhhHHHHhhhcccCCC-ceechHHHHHHHH----hcCCCCCChHHHHHHHHHHHHhCCceeeeec
Q 035853 108 QKWPLLFSIVELPQHLKLCCLYLSAFRDA-FEIATKELYQLWI----AEGFIPDNSEKTAEEYLEQLISRGFIKVKKR 180 (581)
Q Consensus 108 ~~~~L~~sY~~L~~~lk~cFl~~a~Fp~~-~~i~~~~Li~~w~----a~g~i~~~~~~~~~~~~~~L~~~~ll~~~~~ 180 (581)
....+.-++..||.+.|..++.++....+ ..+...++.+... ..| ..+-.......+++.|...++++....
T Consensus 277 ~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~L~~~gli~~~~~ 353 (387)
T 2v1u_A 277 ERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLG-LEHVTLRRVSGIISELDMLGIVKSRVV 353 (387)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTT-CCCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred hhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHhCCCeEEEee
Confidence 03344556688998888777777733323 2455554444332 234 333445677889999999999998653
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=92.99 E-value=0.31 Score=48.69 Aligned_cols=175 Identities=15% Similarity=0.071 Sum_probs=94.7
Q ss_pred HHHHHHHHHhcCceEEEEEEcCCChhH---HHH-HHhhCCCCCCCCEEEEeCCC-------------------------h
Q 035853 3 QRKTALHDYLRNKRYLIVFEDVISSDV---WDY-IGKALPDHQNGSRVLAMLTC-------------------------S 53 (581)
Q Consensus 3 ~l~~~l~~~L~~kr~LlVLDDv~~~~~---~~~-l~~~~~~~~~gs~iivTtr~-------------------------~ 53 (581)
++.+.+.+.++.++.+|||||++.... .+. +...+.+. .+.+||+||+. .
T Consensus 121 ~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~ 199 (384)
T 2qby_B 121 EYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDA 199 (384)
T ss_dssp HHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCH
T ss_pred HHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCH
Confidence 445667777877777999999977532 223 22222333 67888888774 0
Q ss_pred HHHHHhc-ccccCccccCCC-CChh-hHHhhcC---Ccch-hhhhhccc-c-------ce-ecccc-cccccccceeccc
Q 035853 54 DEIFSLC-RLENGEMIHLDS-VPAG-PLRAKYQ---ERPL-VFLYYGRN-S-------LV-ENMRL-TWRIQKWPLLFSI 116 (581)
Q Consensus 54 ~~~~~Lf-~~f~~~~~~~~~-~~~~-~i~~~c~---GlPL-al~~~g~~-t-------~~-~~~~~-~~~~~~~~L~~sY 116 (581)
++..+++ +.+........- .+.. .++++|+ |.|- |+.++-.+ . +- +.+.. ..+.....+.-++
T Consensus 200 ~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~~~~~~~~~ 279 (384)
T 2qby_B 200 EQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDYEQERLIEAV 279 (384)
T ss_dssp HHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhcchHHHHH
Confidence 7788888 543210001111 4455 7777777 8776 44443332 0 00 00000 0000033455667
Q ss_pred cCchhhhHHHHhhhcccCCCceechHHHHHHHHhcCCCCCChHHHHHHHHHHHHhCCceeeeec
Q 035853 117 VELPQHLKLCCLYLSAFRDAFEIATKELYQLWIAEGFIPDNSEKTAEEYLEQLISRGFIKVKKR 180 (581)
Q Consensus 117 ~~L~~~lk~cFl~~a~Fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~~L~~~~ll~~~~~ 180 (581)
+.|+.+.|..+..++....+-.+. +.....--..| ..+........+++.|.++++++....
T Consensus 280 ~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~~~~~~~~~~~l~~L~~~gli~~~~~ 341 (384)
T 2qby_B 280 KALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QKPLSYRRFSDIISELDMFGIVKIRII 341 (384)
T ss_dssp HSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CCCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CCCCCHHHHHHHHHHHHhCCCEEEEec
Confidence 889888877776666511101111 12222222334 222344567789999999999998664
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=92.57 E-value=0.53 Score=46.99 Aligned_cols=199 Identities=13% Similarity=0.078 Sum_probs=107.2
Q ss_pred HHHHHHHhc--CceEEEEEEcCCCh--hHHHHHHhhCCCCC----CCCEEEEeCCCh-----------------------
Q 035853 5 KTALHDYLR--NKRYLIVFEDVISS--DVWDYIGKALPDHQ----NGSRVLAMLTCS----------------------- 53 (581)
Q Consensus 5 ~~~l~~~L~--~kr~LlVLDDv~~~--~~~~~l~~~~~~~~----~gs~iivTtr~~----------------------- 53 (581)
.+.+.+.+. +++.+|||||++.. +.++.+...+.... .+..||+||++.
T Consensus 113 ~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~p 192 (389)
T 1fnn_A 113 LALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSP 192 (389)
T ss_dssp HHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCC
T ss_pred HHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCC
Confidence 344444443 67899999999774 55667766664322 366777776640
Q ss_pred ---HHHHHhc-ccccCcc-ccCCCCChh-hHHhhc---------CCcchhhhhh-ccc-c---------ce-ecccc-cc
Q 035853 54 ---DEIFSLC-RLENGEM-IHLDSVPAG-PLRAKY---------QERPLVFLYY-GRN-S---------LV-ENMRL-TW 105 (581)
Q Consensus 54 ---~~~~~Lf-~~f~~~~-~~~~~~~~~-~i~~~c---------~GlPLal~~~-g~~-t---------~~-~~~~~-~~ 105 (581)
++..+++ +.+.... ...-+.+.. .+++++ .|.|-.+..+ ..+ . +. +.+.. ..
T Consensus 193 l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~ 272 (389)
T 1fnn_A 193 YTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSK 272 (389)
T ss_dssp CBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 5566666 3332100 011113445 788888 7876544333 222 0 00 00000 00
Q ss_pred cccccceeccccCchhhhHHHHhhhcccC---CCceechHHHHHHHHh----cCCCCCChHHHHHHHHHHHHhCCceeee
Q 035853 106 RIQKWPLLFSIVELPQHLKLCCLYLSAFR---DAFEIATKELYQLWIA----EGFIPDNSEKTAEEYLEQLISRGFIKVK 178 (581)
Q Consensus 106 ~~~~~~L~~sY~~L~~~lk~cFl~~a~Fp---~~~~i~~~~Li~~w~a----~g~i~~~~~~~~~~~~~~L~~~~ll~~~ 178 (581)
+.....+.-.+..||.+.|..+..++.+. .+-.+...++.+.+.. .|.. +-.......++++|.+++++...
T Consensus 273 ~~~~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 273 EVLFGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGER-PRVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp HHSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCC-CCCHHHHHHHHHHHHHTTSSEEE
T ss_pred HHhhhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHhCCCeEEe
Confidence 00033444556788888888777777654 3325666777665543 3422 12234567899999999999987
Q ss_pred ec----cCCCCEeEEE----eChHHHHHHHHhcc
Q 035853 179 KR----RAGGTIKTCY----ISFITRGMLVLVAE 204 (581)
Q Consensus 179 ~~----~~~g~~~~~~----mHdli~dl~~~i~~ 204 (581)
.. +..|+...++ .||++..+...+..
T Consensus 352 ~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~ 385 (389)
T 1fnn_A 352 QNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIK 385 (389)
T ss_dssp EC---------CEEEECCSSCHHHHHHHHHHHHH
T ss_pred eeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHH
Confidence 64 2223333343 34666666555443
|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* | Back alignment and structure |
|---|
Probab=87.69 E-value=0.23 Score=48.31 Aligned_cols=120 Identities=10% Similarity=-0.078 Sum_probs=62.0
Q ss_pred ceEEEEEEcCCCh--hHHHHHHhhCCCCC------------------CCCEEEEeCCC----------------------
Q 035853 15 KRYLIVFEDVISS--DVWDYIGKALPDHQ------------------NGSRVLAMLTC---------------------- 52 (581)
Q Consensus 15 kr~LlVLDDv~~~--~~~~~l~~~~~~~~------------------~gs~iivTtr~---------------------- 52 (581)
+..+|+|||+... ...+.+...+.... ++.++|.||..
T Consensus 90 ~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~ 169 (324)
T 1hqc_A 90 EGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYT 169 (324)
T ss_dssp TTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCC
T ss_pred CCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCC
Confidence 6679999999775 34444543332211 23466666542
Q ss_pred hHHHHHhc-ccccCccccCCCCChh-hHHhhcCCcchhhhhhccc-c--ce--e--ccccccccc--ccceeccccCchh
Q 035853 53 SDEIFSLC-RLENGEMIHLDSVPAG-PLRAKYQERPLVFLYYGRN-S--LV--E--NMRLTWRIQ--KWPLLFSIVELPQ 121 (581)
Q Consensus 53 ~~~~~~Lf-~~f~~~~~~~~~~~~~-~i~~~c~GlPLal~~~g~~-t--~~--~--~~~~~~~~~--~~~L~~sY~~L~~ 121 (581)
.+|..+++ +...... ..-+.+.. .+++++.|.|-.+..+... . .. . .+. ...+. ...+..++..++.
T Consensus 170 ~~e~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~-~~~~~~~~~~~~~~~~~l~~ 247 (324)
T 1hqc_A 170 PEELAQGVMRDARLLG-VRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVIT-RERALEALAALGLDELGLEK 247 (324)
T ss_dssp HHHHHHHHHHHHHTTT-CCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCC-HHHHHHHHHHHTCCTTCCCH
T ss_pred HHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHhcccccCCCH
Confidence 06666666 4333211 11114455 8899999999877654333 0 00 0 000 00000 2223445667777
Q ss_pred hhHHHHhhhcccCCC
Q 035853 122 HLKLCCLYLSAFRDA 136 (581)
Q Consensus 122 ~lk~cFl~~a~Fp~~ 136 (581)
..+..+....-...+
T Consensus 248 ~e~~~i~~~~~~~~g 262 (324)
T 1hqc_A 248 RDREILEVLILRFGG 262 (324)
T ss_dssp HHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHhcC
Confidence 777777665544333
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=86.73 E-value=0.54 Score=42.40 Aligned_cols=39 Identities=8% Similarity=0.089 Sum_probs=29.3
Q ss_pred CceEEEEEEcCCCh--hHHHHHHhhCCCCCCCCEEEEeCCC
Q 035853 14 NKRYLIVFEDVISS--DVWDYIGKALPDHQNGSRVLAMLTC 52 (581)
Q Consensus 14 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gs~iivTtr~ 52 (581)
+++.+||+||++.. ..++.+...+.....+.++|+||+.
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~ 141 (226)
T 2chg_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNY 141 (226)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred cCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 67899999999775 4566666666555667889998765
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=81.80 E-value=0.65 Score=44.90 Aligned_cols=81 Identities=7% Similarity=0.022 Sum_probs=50.8
Q ss_pred cCceEEEEEEcCCCh--hHHHHHHhhCCCCCCCCEEEEeCCCh---------------------HHHHHhc-ccccCccc
Q 035853 13 RNKRYLIVFEDVISS--DVWDYIGKALPDHQNGSRVLAMLTCS---------------------DEIFSLC-RLENGEMI 68 (581)
Q Consensus 13 ~~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gs~iivTtr~~---------------------~~~~~Lf-~~f~~~~~ 68 (581)
.+++.+||+||++.. ..++.+...+.....+.++|+||+.. ++..+++ +.+....
T Consensus 105 ~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~- 183 (323)
T 1sxj_B 105 PGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLED- 183 (323)
T ss_dssp TTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHT-
T ss_pred CCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcC-
Confidence 456899999999774 45666665555555678888887651 6666666 4332211
Q ss_pred cCCC-CChh-hHHhhcCCcch-hhhhhccc
Q 035853 69 HLDS-VPAG-PLRAKYQERPL-VFLYYGRN 95 (581)
Q Consensus 69 ~~~~-~~~~-~i~~~c~GlPL-al~~~g~~ 95 (581)
.+- .+.. .+++.|+|.|. |+..+...
T Consensus 184 -~~~~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 184 -VKYTNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp -CCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 111 3445 88999999994 44444333
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=80.94 E-value=3.2 Score=40.99 Aligned_cols=173 Identities=12% Similarity=0.111 Sum_probs=90.0
Q ss_pred HHHHHHHhc--CceEEEEEEcCCCh------hHHHHHHhhCCC-CCCCCEEEEeCCC-----------------------
Q 035853 5 KTALHDYLR--NKRYLIVFEDVISS------DVWDYIGKALPD-HQNGSRVLAMLTC----------------------- 52 (581)
Q Consensus 5 ~~~l~~~L~--~kr~LlVLDDv~~~------~~~~~l~~~~~~-~~~gs~iivTtr~----------------------- 52 (581)
.+.+.+.+. +++.+|||||++.. +.+..+...... ...+..+|+||+.
T Consensus 116 ~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~ 195 (386)
T 2qby_A 116 YRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFP 195 (386)
T ss_dssp HHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEEC
T ss_pred HHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeC
Confidence 445555554 45899999999763 334445443322 2334566777653
Q ss_pred ---hHHHHHhc-ccccCccccCCC-CChh-hHHhhcC---Ccchhh-hhhccc-ccee-----ccccccccc-------c
Q 035853 53 ---SDEIFSLC-RLENGEMIHLDS-VPAG-PLRAKYQ---ERPLVF-LYYGRN-SLVE-----NMRLTWRIQ-------K 109 (581)
Q Consensus 53 ---~~~~~~Lf-~~f~~~~~~~~~-~~~~-~i~~~c~---GlPLal-~~~g~~-t~~~-----~~~~~~~~~-------~ 109 (581)
.++..+++ +.+........- .+.. .++++++ |.|..+ .++..+ .... .+. ...+. .
T Consensus 196 ~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~-~~~v~~a~~~~~~ 274 (386)
T 2qby_A 196 PYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVK-EEYVYMAKEEIER 274 (386)
T ss_dssp CCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCC-HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccC-HHHHHHHHHHHhh
Confidence 07777777 443211001111 3445 6777777 988844 333332 0000 000 00000 2
Q ss_pred cceeccccCchhhhHHHHhhhcccCC-C-ceechHHHHHHH----HhcCCCCCChHHHHHHHHHHHHhCCceeeee
Q 035853 110 WPLLFSIVELPQHLKLCCLYLSAFRD-A-FEIATKELYQLW----IAEGFIPDNSEKTAEEYLEQLISRGFIKVKK 179 (581)
Q Consensus 110 ~~L~~sY~~L~~~lk~cFl~~a~Fp~-~-~~i~~~~Li~~w----~a~g~i~~~~~~~~~~~~~~L~~~~ll~~~~ 179 (581)
..+.-++..||.+.+..+..++...+ + ..+...++.+.+ -..| +.+-.......+++.|.+.+++....
T Consensus 275 ~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g-~~~~~~~~~~~~l~~L~~~gli~~~~ 349 (386)
T 2qby_A 275 DRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG-VEAVTQRRVSDIINELDMVGILTAKV 349 (386)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT-CCCCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred chHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHhCCCEEEEe
Confidence 34555667888888887777775332 2 124444443322 1233 22223345678999999999998764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 581 | ||||
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 4e-04 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 8e-04 |
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.0 bits (92), Expect = 4e-04
Identities = 44/210 (20%), Positives = 76/210 (36%), Gaps = 11/210 (5%)
Query: 277 FKFLRLLDLGTIVLDEYPAG-INPLLLLKYLVLNIPSLKHLPSSLCNLLS-LHTLDMRWS 334
K L L L + + G PL+ L+ L L+ LK LP + L L + +
Sbjct: 54 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEIT 113
Query: 335 YIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPSSCTQDILGRLPS 394
+ + + L + ++ L++I + ++ T G PS
Sbjct: 114 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR-IADTNITTIPQGLPPS 172
Query: 395 LQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVLPEYQFPPRLIELS 454
L + N + + +L L +L L L A+ S P L EL
Sbjct: 173 LTELHLDGN--KITKVDAASLKGLNNLAKLGLSFNSISAVDNGS-----LANTPHLRELH 225
Query: 455 LSNTELKYDPMPALEKLPHLRVLKLKKNSF 484
L+N +L P L +++V+ L N+
Sbjct: 226 LNNNKLVKVPG-GLADHKYIQVVYLHNNNI 254
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 39.6 bits (91), Expect = 8e-04
Identities = 32/180 (17%), Positives = 63/180 (35%), Gaps = 17/180 (9%)
Query: 303 LKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAH 362
L L LN LK + + L +L +L LD+ + I + + + +L L G+ +
Sbjct: 221 LDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQISNI 278
Query: 363 PGKCCSSLENLNFISVLHPSSCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLE 422
+ L L + + + L +L ++ N S S +S+ L L+
Sbjct: 279 S--PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSS----LTKLQ 332
Query: 423 SLKLVDERTIALQPSSIVLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKN 482
L + + + + LS + ++ + L L + L L
Sbjct: 333 RLFFANNKVSDV-------SSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQ 383
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 581 | |||
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.87 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 99.86 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.86 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.85 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.85 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.84 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.79 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.75 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.74 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.72 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.71 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.64 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.64 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.61 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.6 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.58 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.58 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.57 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.54 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.51 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.5 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.49 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.47 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.43 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.4 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.34 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.31 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.24 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.18 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.12 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.09 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.09 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.08 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.03 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.0 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.76 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.68 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.85 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.7 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.33 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.16 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.81 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.58 |
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.87 E-value=2.7e-21 Score=196.22 Aligned_cols=191 Identities=18% Similarity=0.174 Sum_probs=139.3
Q ss_pred hhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCCCcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCC
Q 035853 342 EIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPSSCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHL 421 (581)
Q Consensus 342 ~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L 421 (581)
....+++++.+++++|.+.+..| .+..++|++|++.++.-..+..+..+++|+.|+++++. .. .++ .+..+++|
T Consensus 192 ~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~--l~-~~~-~~~~~~~L 265 (384)
T d2omza2 192 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ--IS-NLA-PLSGLTKL 265 (384)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC--CC-CCG-GGTTCTTC
T ss_pred ccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCcchhhcccccchhccccCc--cC-CCC-cccccccC
Confidence 34556777777777777654332 35567788888777772223456777888888888775 22 222 36677788
Q ss_pred CEEEeecCCcccCCcccc-cCCCCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCc
Q 035853 422 ESLKLVDERTIALQPSSI-VLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLK 500 (581)
Q Consensus 422 ~~L~l~~~~~i~L~~l~l-~lp~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~ 500 (581)
+.|+++++. + .++.+..++.++.+.+..|.+.+ +..+..+++++.|++++|.+.+.. .+..+|+|+
T Consensus 266 ~~L~l~~~~--------l~~~~~~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~---~l~~l~~L~ 332 (384)
T d2omza2 266 TELKLGANQ--------ISNISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDIS---PVSSLTKLQ 332 (384)
T ss_dssp SEEECCSSC--------CCCCGGGTTCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCG---GGGGCTTCC
T ss_pred CEeeccCcc--------cCCCCcccccccccccccccccccc--ccccchhcccCeEECCCCCCCCCc---ccccCCCCC
Confidence 888887744 4 44445567788888888887653 456788999999999988876543 257799999
Q ss_pred EEEecCCCcccccccCcccccccceEeeccCcCCCCCcccccCCCCccEEEeeCC
Q 035853 501 VMHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWP 555 (581)
Q Consensus 501 ~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 555 (581)
+|++++| .++.++ .++.+|+|++|++++|. +..++. ++++++|+.|+|+++
T Consensus 333 ~L~L~~n-~l~~l~-~l~~l~~L~~L~l~~N~-l~~l~~-l~~l~~L~~L~L~~N 383 (384)
T d2omza2 333 RLFFANN-KVSDVS-SLANLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQ 383 (384)
T ss_dssp EEECCSS-CCCCCG-GGGGCTTCCEEECCSSC-CCBCGG-GTTCTTCSEEECCCE
T ss_pred EEECCCC-CCCCCh-hHcCCCCCCEEECCCCc-CCCChh-hccCCCCCEeeCCCC
Confidence 9999998 677776 47889999999999886 566663 889999999999875
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.86 E-value=5.4e-23 Score=198.07 Aligned_cols=116 Identities=12% Similarity=0.162 Sum_probs=95.0
Q ss_pred HHHHHHHHhcCceEEEEEEcCCChhHHHHHHhhCCCCCCCCEEEEeCCC-------------h-------HHHHHhc-cc
Q 035853 4 RKTALHDYLRNKRYLIVFEDVISSDVWDYIGKALPDHQNGSRVLAMLTC-------------S-------DEIFSLC-RL 62 (581)
Q Consensus 4 l~~~l~~~L~~kr~LlVLDDv~~~~~~~~l~~~~~~~~~gs~iivTtr~-------------~-------~~~~~Lf-~~ 62 (581)
.+..+++.|.+||+|+||||||+.++|+.+.. .|||||||||+ | +|||+|| ++
T Consensus 124 ~~~~~~~~L~~kr~LlVLDDv~~~~~~~~~~~------~~srilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 197 (277)
T d2a5yb3 124 KRMICNALIDRPNTLFVFDDVVQEETIRWAQE------LRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAY 197 (277)
T ss_dssp HHHHHHHHTTSTTEEEEEEEECCHHHHHHHHH------TTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHT
T ss_pred HHHHHHHHhccCCeeEecchhhHHhhhhhhcc------cCceEEEEeehHHHHHhcCCCCceEECCCCCHHHHHHHHHHH
Confidence 34568889999999999999999999987653 48999999997 1 9999999 77
Q ss_pred -ccCccccCCC-CChh-hHHhhcCCcchhhhhhccc----c--ceeccccccccc-------ccceeccccCchhhhHHH
Q 035853 63 -ENGEMIHLDS-VPAG-PLRAKYQERPLVFLYYGRN----S--LVENMRLTWRIQ-------KWPLLFSIVELPQHLKLC 126 (581)
Q Consensus 63 -f~~~~~~~~~-~~~~-~i~~~c~GlPLal~~~g~~----t--~~~~~~~~~~~~-------~~~L~~sY~~L~~~lk~c 126 (581)
|+.. ..+. ++++ +||++|+|+||||+++|+. + .|.+. .++++ .+++++||++||+++|+|
T Consensus 198 ~~~~~--~~~~~~~~~~~iv~~c~GlPLAl~~ig~~l~~k~~~~~~~~--~~~L~~~~~~~v~~il~~sY~~L~~~lk~c 273 (277)
T d2a5yb3 198 GMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQL--NNKLESRGLVGVECITPYSYKSLAMALQRC 273 (277)
T ss_dssp SCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHH--HHHHHHHCSSTTCCCSSSSSSSHHHHHHHH
T ss_pred hCCcc--CchhhHHHHHHHHHHhCCCHHHHHHHHHHhccCCHHHHHHH--HHHHhcCcHHHHHHHHHHHHhcccHHHHHH
Confidence 7643 2334 8899 9999999999999999999 2 33344 44343 899999999999999999
Q ss_pred Hhh
Q 035853 127 CLY 129 (581)
Q Consensus 127 Fl~ 129 (581)
|-+
T Consensus 274 ~~~ 276 (277)
T d2a5yb3 274 VEV 276 (277)
T ss_dssp HHT
T ss_pred HHh
Confidence 975
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.86 E-value=5.3e-21 Score=187.83 Aligned_cols=260 Identities=18% Similarity=0.206 Sum_probs=204.7
Q ss_pred ceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccCh-hhhcccCCcEEEecCCccccc-chhhhcCCCCcEeecCC
Q 035853 279 FLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPS-SLCNLLSLHTLDMRWSYIHHT-PDEIWKMNELRHLNFGS 356 (581)
Q Consensus 279 ~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~ 356 (581)
.+++++-++..++++|..+. +++++|++++|+|+.+|+ ++.++++|++|++++|.+..+ |..+.++++|++|++++
T Consensus 11 ~~~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~ 88 (305)
T d1xkua_ 11 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88 (305)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred cCCEEEecCCCCCccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence 45778888888888998775 589999999999998886 688999999999999988777 45688899999999999
Q ss_pred cccCCCCCCccCCCCCCcEeceecCC-Cc-chhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccC
Q 035853 357 ITLPAHPGKCCSSLENLNFISVLHPS-SC-TQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIAL 434 (581)
Q Consensus 357 ~~~~~~~p~~i~~l~~L~~L~l~~~~-~~-~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L 434 (581)
|.+. .+|..+ ...++.|....+. .. ....+.....++.+....+........+..+..+++|+.+.++.++
T Consensus 89 n~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~---- 161 (305)
T d1xkua_ 89 NQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN---- 161 (305)
T ss_dssp SCCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC----
T ss_pred CccC-cCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCC----
Confidence 9876 566543 3577888877766 33 3334556677777777766533444455667778899999998855
Q ss_pred Ccccc-cCC-CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccc
Q 035853 435 QPSSI-VLP-EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEE 512 (581)
Q Consensus 435 ~~l~l-~lp-~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 512 (581)
+ .+| . .+++|++|++++|......+..+.+++.+++|.+++|.+.+.. +..+.++++|++|++++| .++.
T Consensus 162 ----l~~l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~-~~~~~~l~~L~~L~L~~N-~L~~ 233 (305)
T d1xkua_ 162 ----ITTIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD-NGSLANTPHLRELHLNNN-KLVK 233 (305)
T ss_dssp ----CCSCCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC-TTTGGGSTTCCEEECCSS-CCSS
T ss_pred ----ccccCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccc-cccccccccceeeecccc-cccc
Confidence 5 666 3 3689999999999877777788999999999999988775543 455677899999999998 6889
Q ss_pred cccCcccccccceEeeccCcCCCCCcc-------cccCCCCccEEEeeCCC
Q 035853 513 WTMENDAMPKLESLIINPCAYLKILPE-------ELWRIKSLTKLELWWPR 556 (581)
Q Consensus 513 l~~~~~~l~~L~~L~l~~c~~l~~lp~-------~l~~l~~L~~L~l~~c~ 556 (581)
+|..+..+++|+.|++++|. ++.++. .....++|+.|++++||
T Consensus 234 lp~~l~~l~~L~~L~Ls~N~-i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~ 283 (305)
T d1xkua_ 234 VPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNP 283 (305)
T ss_dssp CCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred cccccccccCCCEEECCCCc-cCccChhhccCcchhcccCCCCEEECCCCc
Confidence 99889999999999999985 666653 23457889999999998
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.85 E-value=6.4e-22 Score=195.26 Aligned_cols=245 Identities=18% Similarity=0.210 Sum_probs=165.1
Q ss_pred ceeEEEecCcccc---cCCCcccCcCCCcEEeccC-CCCc-ccChhhhcccCCcEEEecCCccccc-chhhhcCCCCcEe
Q 035853 279 FLRLLDLGTIVLD---EYPAGINPLLLLKYLVLNI-PSLK-HLPSSLCNLLSLHTLDMRWSYIHHT-PDEIWKMNELRHL 352 (581)
Q Consensus 279 ~Lr~L~L~~~~l~---~lp~~i~~l~~Lr~L~L~~-~~i~-~lp~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L 352 (581)
+++.|+|+++.+. .+|..++++++|++|+|++ |.+. .+|.++++|++|++|++++|.+..+ |..+..+.+|+++
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l 130 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence 5677777777765 4677777888888888875 5665 6777788888888888887766554 3446677778888
Q ss_pred ecCCcccCCCCCCccCCCCCCcEeceecCC--CcchhhhCCCCCC-CeEEEeeecccchhchhhhcCCCCCCCEEEeecC
Q 035853 353 NFGSITLPAHPGKCCSSLENLNFISVLHPS--SCTQDILGRLPSL-QTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDE 429 (581)
Q Consensus 353 ~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L-~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~ 429 (581)
++++|.....+|..++++++|+.+++.++. ..++..+..+..+ +.+.++.+. .....+..+..+..+ .+++..+
T Consensus 131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~--l~~~~~~~~~~l~~~-~l~l~~~ 207 (313)
T d1ogqa_ 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR--LTGKIPPTFANLNLA-FVDLSRN 207 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE--EEEECCGGGGGCCCS-EEECCSS
T ss_pred ccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccc--ccccccccccccccc-ccccccc
Confidence 887777777777777777777777777776 4566666666665 566666664 444445555544333 4555542
Q ss_pred CcccCCcccc--cCC-CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecC
Q 035853 430 RTIALQPSSI--VLP-EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKS 506 (581)
Q Consensus 430 ~~i~L~~l~l--~lp-~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~ 506 (581)
. + .+| ++..+++++.+++++|.+.+. ++.++.+++|+.|++++|.+.+.. |..++.+++|++|+|++
T Consensus 208 ~--------~~~~~~~~~~~~~~l~~l~~~~~~l~~~-~~~~~~~~~L~~L~Ls~N~l~g~i-P~~l~~L~~L~~L~Ls~ 277 (313)
T d1ogqa_ 208 M--------LEGDASVLFGSDKNTQKIHLAKNSLAFD-LGKVGLSKNLNGLDLRNNRIYGTL-PQGLTQLKFLHSLNVSF 277 (313)
T ss_dssp E--------EEECCGGGCCTTSCCSEEECCSSEECCB-GGGCCCCTTCCEEECCSSCCEECC-CGGGGGCTTCCEEECCS
T ss_pred c--------cccccccccccccccccccccccccccc-ccccccccccccccCccCeecccC-ChHHhCCCCCCEEECcC
Confidence 2 2 455 666777777777777776543 445677777788888777776544 45566777777777777
Q ss_pred CCcccccccCcccccccceEeeccCcCCCCC
Q 035853 507 MFWLEEWTMENDAMPKLESLIINPCAYLKIL 537 (581)
Q Consensus 507 ~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l 537 (581)
|.-...+|. .+.+++|+.+++++|+.+...
T Consensus 278 N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~ 307 (313)
T d1ogqa_ 278 NNLCGEIPQ-GGNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp SEEEEECCC-STTGGGSCGGGTCSSSEEEST
T ss_pred CcccccCCC-cccCCCCCHHHhCCCccccCC
Confidence 632225663 567778888888887766543
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.85 E-value=1.6e-20 Score=190.47 Aligned_cols=277 Identities=18% Similarity=0.207 Sum_probs=171.0
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcc
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNL 323 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L 323 (581)
..++++|.+.++.... .+.+..+++|++|++++|+++.+|. ++++++|++|++++|.+..++ .++++
T Consensus 43 l~~l~~L~l~~~~I~~-----------l~gl~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i~~i~-~l~~l 109 (384)
T d2omza2 43 LDQVTTLQADRLGIKS-----------IDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-PLANL 109 (384)
T ss_dssp HTTCCEEECCSSCCCC-----------CTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTC
T ss_pred hCCCCEEECCCCCCCC-----------ccccccCCCCCEEeCcCCcCCCCcc-ccCCccccccccccccccccc-ccccc
Confidence 5667777777766533 2345567777777777777776653 777777777777777777665 36777
Q ss_pred cCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCC-----------------------------------------C
Q 035853 324 LSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPA-----------------------------------------H 362 (581)
Q Consensus 324 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~-----------------------------------------~ 362 (581)
++|+.|+++++.+..++. ......+..+....+.+.. .
T Consensus 110 ~~L~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (384)
T d2omza2 110 TNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS 188 (384)
T ss_dssp TTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC
T ss_pred cccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccc
Confidence 777777777765555443 2223333333333222211 1
Q ss_pred CCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-c
Q 035853 363 PGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-V 440 (581)
Q Consensus 363 ~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~ 440 (581)
.+.....+++++.+.+..+. ...+ ....+++|+.|+++++. ...+ ..+..+++|+.|+++++. + .
T Consensus 189 ~~~~~~~l~~~~~l~l~~n~i~~~~-~~~~~~~L~~L~l~~n~---l~~~-~~l~~l~~L~~L~l~~n~--------l~~ 255 (384)
T d2omza2 189 DISVLAKLTNLESLIATNNQISDIT-PLGILTNLDELSLNGNQ---LKDI-GTLASLTNLTDLDLANNQ--------ISN 255 (384)
T ss_dssp CCGGGGGCTTCSEEECCSSCCCCCG-GGGGCTTCCEEECCSSC---CCCC-GGGGGCTTCSEEECCSSC--------CCC
T ss_pred cccccccccccceeeccCCccCCCC-cccccCCCCEEECCCCC---CCCc-chhhcccccchhccccCc--------cCC
Confidence 11223344555555555444 2221 23344556666665553 1112 234455566666666533 3 3
Q ss_pred CCCCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccCcccc
Q 035853 441 LPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAM 520 (581)
Q Consensus 441 lp~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l 520 (581)
++.++.+++|++|+++++.+.+ .+.+..++.++.+.+.+|.+.+.. ....+++++.|+++++ .++.++. +..+
T Consensus 256 ~~~~~~~~~L~~L~l~~~~l~~--~~~~~~~~~l~~l~~~~n~l~~~~---~~~~~~~l~~L~ls~n-~l~~l~~-l~~l 328 (384)
T d2omza2 256 LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDIS---PISNLKNLTYLTLYFN-NISDISP-VSSL 328 (384)
T ss_dssp CGGGTTCTTCSEEECCSSCCCC--CGGGTTCTTCSEEECCSSCCSCCG---GGGGCTTCSEEECCSS-CCSCCGG-GGGC
T ss_pred CCcccccccCCEeeccCcccCC--CCcccccccccccccccccccccc---ccchhcccCeEECCCC-CCCCCcc-cccC
Confidence 3334556677777777666543 234566667777777666554321 3566889999999998 6777754 7889
Q ss_pred cccceEeeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 521 PKLESLIINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 521 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
|+|++|++++|. ++.+| .+.++++|++|++++|+
T Consensus 329 ~~L~~L~L~~n~-l~~l~-~l~~l~~L~~L~l~~N~ 362 (384)
T d2omza2 329 TKLQRLFFANNK-VSDVS-SLANLTNINWLSAGHNQ 362 (384)
T ss_dssp TTCCEEECCSSC-CCCCG-GGGGCTTCCEEECCSSC
T ss_pred CCCCEEECCCCC-CCCCh-hHcCCCCCCEEECCCCc
Confidence 999999999995 67776 68999999999999987
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.84 E-value=1.9e-21 Score=191.88 Aligned_cols=250 Identities=16% Similarity=0.173 Sum_probs=203.9
Q ss_pred CcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecC-cccc-cCCCcccCcCCCcEEeccCCCCcc-cChhhh
Q 035853 245 TYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGT-IVLD-EYPAGINPLLLLKYLVLNIPSLKH-LPSSLC 321 (581)
Q Consensus 245 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~-~~l~-~lp~~i~~l~~Lr~L~L~~~~i~~-lp~~i~ 321 (581)
.+++.|.+.++...... .. ++.+.++++|++|+|++ +.+. .+|..|+++++|++|++++|.+.. .|..+.
T Consensus 50 ~~v~~L~L~~~~l~g~~----~l---p~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~ 122 (313)
T d1ogqa_ 50 YRVNNLDLSGLNLPKPY----PI---PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122 (313)
T ss_dssp CCEEEEEEECCCCSSCE----EC---CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG
T ss_pred EEEEEEECCCCCCCCCC----CC---ChHHhcCccccccccccccccccccccccccccccchhhhcccccccccccccc
Confidence 36778888876553211 12 57889999999999997 5676 899999999999999999999984 456688
Q ss_pred cccCCcEEEecCC-cccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCC-cEeceecCC--CcchhhhCCCCCCCe
Q 035853 322 NLLSLHTLDMRWS-YIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENL-NFISVLHPS--SCTQDILGRLPSLQT 397 (581)
Q Consensus 322 ~L~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L-~~L~l~~~~--~~~~~~l~~l~~L~~ 397 (581)
.+.+|+++++++| ....+|..++++++|+++++++|.+.+.+|..++.+.++ +.+.+..+. ...+..+..+..+ .
T Consensus 123 ~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~ 201 (313)
T d1ogqa_ 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-F 201 (313)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-E
T ss_pred chhhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-c
Confidence 9999999999999 557789999999999999999999988899988888876 777776666 4555666665544 6
Q ss_pred EEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC-CCCCCCCccEEEEeeccCCCCCcccccCCCCCC
Q 035853 398 FRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP-EYQFPPRLIELSLSNTELKYDPMPALEKLPHLR 475 (581)
Q Consensus 398 L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp-~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~ 475 (581)
+++..+. .....|..+..+++|+.+++..+. + ..+ .+..+++|+.|++++|.+++..|..++++++|+
T Consensus 202 l~l~~~~--~~~~~~~~~~~~~~l~~l~~~~~~--------l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~ 271 (313)
T d1ogqa_ 202 VDLSRNM--LEGDASVLFGSDKNTQKIHLAKNS--------LAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271 (313)
T ss_dssp EECCSSE--EEECCGGGCCTTSCCSEEECCSSE--------ECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCC
T ss_pred ccccccc--cccccccccccccccccccccccc--------ccccccccccccccccccCccCeecccCChHHhCCCCCC
Confidence 7777775 667788888999999999998844 4 333 778899999999999999988999999999999
Q ss_pred eEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccc
Q 035853 476 VLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWT 514 (581)
Q Consensus 476 ~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 514 (581)
+|+|++|.+.+.. | ..+.+++|+.+++.+|+.+...|
T Consensus 272 ~L~Ls~N~l~g~i-P-~~~~L~~L~~l~l~~N~~l~g~p 308 (313)
T d1ogqa_ 272 SLNVSFNNLCGEI-P-QGGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp EEECCSSEEEEEC-C-CSTTGGGSCGGGTCSSSEEESTT
T ss_pred EEECcCCcccccC-C-CcccCCCCCHHHhCCCccccCCC
Confidence 9999999998765 3 35678899999999987655433
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.79 E-value=1e-18 Score=171.29 Aligned_cols=238 Identities=16% Similarity=0.186 Sum_probs=171.7
Q ss_pred CceeEEEecCcccccCCC-cccCcCCCcEEeccCCCCccc-ChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecC
Q 035853 278 KFLRLLDLGTIVLDEYPA-GINPLLLLKYLVLNIPSLKHL-PSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFG 355 (581)
Q Consensus 278 ~~Lr~L~L~~~~l~~lp~-~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 355 (581)
+++++|+|++|+++.+|. .|.++++|++|++++|.+..+ |..+.++++|++|++++|+++.+|..+ ...++.|++.
T Consensus 31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~--~~~l~~L~~~ 108 (305)
T d1xkua_ 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVH 108 (305)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC--CTTCCEEECC
T ss_pred CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccch--hhhhhhhhcc
Confidence 568888888888887775 578888888888888888766 456788888888888888888887643 4577888887
Q ss_pred CcccCCCCCCccCCCCCCcEeceecCC----CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCc
Q 035853 356 SITLPAHPGKCCSSLENLNFISVLHPS----SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERT 431 (581)
Q Consensus 356 ~~~~~~~~p~~i~~l~~L~~L~l~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~ 431 (581)
.|.+....+..+.....++.+....+. ......+..+++|+.++++++. ...++.. .+++|+.|+++++.
T Consensus 109 ~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~---l~~l~~~--~~~~L~~L~l~~n~- 182 (305)
T d1xkua_ 109 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN---ITTIPQG--LPPSLTELHLDGNK- 182 (305)
T ss_dssp SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC---CCSCCSS--CCTTCSEEECTTSC-
T ss_pred ccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCC---ccccCcc--cCCccCEEECCCCc-
Confidence 777764333345556666666665554 2334456677888888888774 2333333 25678888888744
Q ss_pred ccCCcccc--cCC-CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCC
Q 035853 432 IALQPSSI--VLP-EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMF 508 (581)
Q Consensus 432 i~L~~l~l--~lp-~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 508 (581)
. ..| .+..++.+++|++++|.+....+..+.++++|++|+|++|.+... +..+..+++|+.|++++|
T Consensus 183 -------~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~l--p~~l~~l~~L~~L~Ls~N- 252 (305)
T d1xkua_ 183 -------ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV--PGGLADHKYIQVVYLHNN- 252 (305)
T ss_dssp -------CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC--CTTTTTCSSCCEEECCSS-
T ss_pred -------CCCCChhHhhccccccccccccccccccccccccccccceeeeccccccccc--ccccccccCCCEEECCCC-
Confidence 3 334 677788888898888887776677788889999999988877532 456778889999999887
Q ss_pred cccccccC-------cccccccceEeeccCcC
Q 035853 509 WLEEWTME-------NDAMPKLESLIINPCAY 533 (581)
Q Consensus 509 ~l~~l~~~-------~~~l~~L~~L~l~~c~~ 533 (581)
.++.++.. ...+++|+.|++++|+.
T Consensus 253 ~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~ 284 (305)
T d1xkua_ 253 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284 (305)
T ss_dssp CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred ccCccChhhccCcchhcccCCCCEEECCCCcC
Confidence 57766432 34568899999999883
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=8.6e-18 Score=161.05 Aligned_cols=197 Identities=19% Similarity=0.140 Sum_probs=129.2
Q ss_pred ccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccC-hhhhcccCCcEEEecCCcccccchhhhcCCCCcEee
Q 035853 275 KWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLP-SSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLN 353 (581)
Q Consensus 275 ~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~ 353 (581)
.+...+...+.+++.++.+|..+. ++|++|+|++|.|+.+| ..+.++++|++|++++|.+..+|. ++.+++|++|+
T Consensus 7 ~~~~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~ 83 (266)
T d1p9ag_ 7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLD 83 (266)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEE
T ss_pred cccCCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-ccccccccccc
Confidence 345556666888888999998775 58999999999999887 468899999999999999888875 57899999999
Q ss_pred cCCcccCCCCCCccCCCCCCcEeceecCC--CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCc
Q 035853 354 FGSITLPAHPGKCCSSLENLNFISVLHPS--SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERT 431 (581)
Q Consensus 354 l~~~~~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~ 431 (581)
+++|.+. ..+..+..+++|+.|++.++. ......+..+.+++.|.++++. .....+.
T Consensus 84 Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~--l~~l~~~------------------ 142 (266)
T d1p9ag_ 84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE--LKTLPPG------------------ 142 (266)
T ss_dssp CCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC--CCCCCTT------------------
T ss_pred ccccccc-ccccccccccccccccccccccceeeccccccccccccccccccc--cceeccc------------------
Confidence 9999876 456667777778887777665 2223334455666666665553 2222222
Q ss_pred ccCCcccccCCCCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCC
Q 035853 432 IALQPSSIVLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMF 508 (581)
Q Consensus 432 i~L~~l~l~lp~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 508 (581)
++..+++|+.+++++|.++...+..++.+++|++|+|++|.+.. ++..+..+++|+.|+|++|+
T Consensus 143 -----------~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~--lp~~~~~~~~L~~L~L~~Np 206 (266)
T d1p9ag_ 143 -----------LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT--IPKGFFGSHLLPFAFLHGNP 206 (266)
T ss_dssp -----------TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCCCSEEECCSCC
T ss_pred -----------cccccccchhcccccccccccCccccccccccceeecccCCCcc--cChhHCCCCCCCEEEecCCC
Confidence 33445555555555555544444445555555555555555431 23334445555555555543
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=3.3e-18 Score=165.79 Aligned_cols=213 Identities=18% Similarity=0.171 Sum_probs=142.7
Q ss_pred EEecCcccccCCCcccCcCCCcEEeccCCCCcccCh-hhhcccCCcEEEecCCcccccchhh-hcCCCCcEeecCCcc-c
Q 035853 283 LDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPS-SLCNLLSLHTLDMRWSYIHHTPDEI-WKMNELRHLNFGSIT-L 359 (581)
Q Consensus 283 L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~-~ 359 (581)
+..+++.++.+|..+. ..+++|+|++|+|+.+|. .+.++.+|++|+++++.+..++... ..+..+++++...+. +
T Consensus 16 v~c~~~~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~ 93 (284)
T d1ozna_ 16 TSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93 (284)
T ss_dssp EECCSSCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred EEcCCCCCCccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence 4556666777776665 467888888888887774 5777888888888887776666543 456777777665433 3
Q ss_pred CCCCCCccCCCCCCcEeceecCC--CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcc
Q 035853 360 PAHPGKCCSSLENLNFISVLHPS--SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPS 437 (581)
Q Consensus 360 ~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l 437 (581)
....+..+.++++|++|++..+. ......+....+|+.++++++. .....+..+..+++|+.|+++++.
T Consensus 94 ~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~--l~~i~~~~f~~~~~L~~L~l~~N~------- 164 (284)
T d1ozna_ 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA--LQALPDDTFRDLGNLTHLFLHGNR------- 164 (284)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSC-------
T ss_pred ccccchhhcccccCCEEecCCcccccccccccchhcccchhhhcccc--ccccChhHhccccchhhcccccCc-------
Confidence 33335567777788888777766 2334455667777777777774 333334556667777777777655
Q ss_pred cc-cCC--CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCC
Q 035853 438 SI-VLP--EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMF 508 (581)
Q Consensus 438 ~l-~lp--~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 508 (581)
+ .+| ++..+++|+++.+++|.+++..+..++.+++|++|++++|.+.+.. +..++.+++|+.|++++++
T Consensus 165 -l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~-~~~~~~~~~L~~L~l~~N~ 236 (284)
T d1ozna_ 165 -ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP-TEALAPLRALQYLRLNDNP 236 (284)
T ss_dssp -CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC-HHHHTTCTTCCEEECCSSC
T ss_pred -ccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccccccc-ccccccccccCEEEecCCC
Confidence 5 454 5667777777777777766656667777777777777777665433 3445667777777777764
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=5.6e-17 Score=156.95 Aligned_cols=218 Identities=17% Similarity=0.111 Sum_probs=143.2
Q ss_pred EEeccCCCCcccChhhhcccCCcEEEecCCcccccch-hhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC-
Q 035853 305 YLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPD-EIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS- 382 (581)
Q Consensus 305 ~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~- 382 (581)
.++.++++++.+|..+. .++++|+|++|+++.+|. .+..+++|++|++++|.+....+..+..+..++.+......
T Consensus 15 ~v~c~~~~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~ 92 (284)
T d1ozna_ 15 TTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (284)
T ss_dssp EEECCSSCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred EEEcCCCCCCccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 34566777888887664 678999999999999886 47889999999999988875555556666666666544332
Q ss_pred --CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccccCCCCCCCCCccEEEEeeccC
Q 035853 383 --SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVLPEYQFPPRLIELSLSNTEL 460 (581)
Q Consensus 383 --~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l~lp~~~~l~~L~~L~L~~~~l 460 (581)
...+..+.++++|+.|+++++. .....+. .+..+++|+.+++++|.+
T Consensus 93 ~~~l~~~~~~~l~~L~~L~l~~n~--~~~~~~~-----------------------------~~~~~~~L~~l~l~~N~l 141 (284)
T d1ozna_ 93 LRSVDPATFHGLGRLHTLHLDRCG--LQELGPG-----------------------------LFRGLAALQYLYLQDNAL 141 (284)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSC--CCCCCTT-----------------------------TTTTCTTCCEEECCSSCC
T ss_pred cccccchhhcccccCCEEecCCcc--ccccccc-----------------------------ccchhcccchhhhccccc
Confidence 2223344555555555555543 1111111 345566677777777766
Q ss_pred CCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccCcccccccceEeeccCcCCCCCccc
Q 035853 461 KYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEE 540 (581)
Q Consensus 461 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~ 540 (581)
+......+..+++|+.|++++|.+.... +..+.++++|+.+.+.+|......|..+..+++|++|++++|......|..
T Consensus 142 ~~i~~~~f~~~~~L~~L~l~~N~l~~l~-~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~ 220 (284)
T d1ozna_ 142 QALPDDTFRDLGNLTHLFLHGNRISSVP-ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA 220 (284)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHH
T ss_pred cccChhHhccccchhhcccccCcccccc-hhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccc
Confidence 6555556677777777777776654322 344566777777777776433333566777788888888877755545556
Q ss_pred ccCCCCccEEEeeCCC
Q 035853 541 LWRIKSLTKLELWWPR 556 (581)
Q Consensus 541 l~~l~~L~~L~l~~c~ 556 (581)
++.+++|++|+++++|
T Consensus 221 ~~~~~~L~~L~l~~N~ 236 (284)
T d1ozna_ 221 LAPLRALQYLRLNDNP 236 (284)
T ss_dssp HTTCTTCCEEECCSSC
T ss_pred cccccccCEEEecCCC
Confidence 7777888888887754
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=3.8e-17 Score=156.45 Aligned_cols=194 Identities=20% Similarity=0.146 Sum_probs=117.1
Q ss_pred CcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccch-hhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEec
Q 035853 299 PLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPD-EIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFIS 377 (581)
Q Consensus 299 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 377 (581)
+...+...+.++++++.+|+.+. ++|++|+|++|.+..+|. .+.++++|++|++++|.+. .+| .++.+++|++|+
T Consensus 8 ~~~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~ 83 (266)
T d1p9ag_ 8 KVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLD 83 (266)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEE
T ss_pred ccCCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-cccccccccccc
Confidence 34456667888888999998774 689999999999988885 5788999999999998875 344 235556666666
Q ss_pred eecCC-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC--CCCCCCCccEE
Q 035853 378 VLHPS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP--EYQFPPRLIEL 453 (581)
Q Consensus 378 l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp--~~~~l~~L~~L 453 (581)
++++. ...+..+..+++|+.|+++++. + .++ .+..+.++++|
T Consensus 84 Ls~N~l~~~~~~~~~l~~L~~L~l~~~~----------------------------------~~~~~~~~~~~l~~l~~L 129 (266)
T d1p9ag_ 84 LSHNQLQSLPLLGQTLPALTVLDVSFNR----------------------------------LTSLPLGALRGLGELQEL 129 (266)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCSSC----------------------------------CCCCCSSTTTTCTTCCEE
T ss_pred cccccccccccccccccccccccccccc----------------------------------cceeeccccccccccccc
Confidence 55554 3333334444444444444332 2 222 23445566666
Q ss_pred EEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccCcccccccceEeeccCc
Q 035853 454 SLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCA 532 (581)
Q Consensus 454 ~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 532 (581)
.+++|.+.......+..+++|+.+++++|.+.... +..+..+++|++|+|++| .++.+|..+..+++|+.|++++||
T Consensus 130 ~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~-~~~~~~l~~L~~L~Ls~N-~L~~lp~~~~~~~~L~~L~L~~Np 206 (266)
T d1p9ag_ 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP-AGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNP 206 (266)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC-TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred cccccccceeccccccccccchhcccccccccccC-ccccccccccceeecccC-CCcccChhHCCCCCCCEEEecCCC
Confidence 66666555444445555666666666655554322 233445555555555555 355555555555555555555554
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.64 E-value=7.4e-16 Score=143.62 Aligned_cols=186 Identities=19% Similarity=0.232 Sum_probs=95.6
Q ss_pred CCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCC
Q 035853 277 FKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGS 356 (581)
Q Consensus 277 ~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~ 356 (581)
+.+|+.|++.+|.++.++ .+.++++|++|++++|.+..++ .+.++++|+++++++|.++.++. +..+++|+.+++++
T Consensus 40 l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~-~l~~l~~l~~l~~~~n~~~~i~~-l~~l~~L~~l~l~~ 116 (227)
T d1h6ua2 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNPLKNVSA-IAGLQSIKTLDLTS 116 (227)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCCSCCEEECCSCCCSCCGG-GTTCTTCCEEECTT
T ss_pred cCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeeccc-ccccccccccccccccccccccc-cccccccccccccc
Confidence 344555555555554442 3455555555555555554443 24455555555555554444432 44455555555544
Q ss_pred cccCCCCCCccCCCCCCcEeceecCCCcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCc
Q 035853 357 ITLPAHPGKCCSSLENLNFISVLHPSSCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQP 436 (581)
Q Consensus 357 ~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~ 436 (581)
+... ....+...+.++.+.++++. .... ..+..+++|+.|.++++.
T Consensus 117 ~~~~------------------------~~~~~~~~~~~~~l~~~~~~--~~~~--~~~~~~~~L~~L~l~~n~------ 162 (227)
T d1h6ua2 117 TQIT------------------------DVTPLAGLSNLQVLYLDLNQ--ITNI--SPLAGLTNLQYLSIGNAQ------ 162 (227)
T ss_dssp SCCC------------------------CCGGGTTCTTCCEEECCSSC--CCCC--GGGGGCTTCCEEECCSSC------
T ss_pred cccc------------------------ccchhccccchhhhhchhhh--hchh--hhhccccccccccccccc------
Confidence 4432 22223344444444444442 1111 113344455555555422
Q ss_pred ccc-cCCCCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecC
Q 035853 437 SSI-VLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKS 506 (581)
Q Consensus 437 l~l-~lp~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~ 506 (581)
+ ..+.++.+++|++|++++|.++. ++.++++++|++|++++|.+.+.. .++.+++|+.|++++
T Consensus 163 --~~~~~~l~~l~~L~~L~Ls~n~l~~--l~~l~~l~~L~~L~Ls~N~lt~i~---~l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 163 --VSDLTPLANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLTN 226 (227)
T ss_dssp --CCCCGGGTTCTTCCEEECCSSCCCC--CGGGGGCTTCCEEECTTSCCCBCG---GGTTCTTCCEEEEEE
T ss_pred --cccchhhcccccceecccCCCccCC--ChhhcCCCCCCEEECcCCcCCCCc---ccccCCCCCEEEeeC
Confidence 2 22234566777777777776643 345777788888888877665432 256777888877753
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.64 E-value=6.2e-16 Score=144.18 Aligned_cols=189 Identities=13% Similarity=0.114 Sum_probs=109.7
Q ss_pred hcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCCCcchhhhCCCCCCCeEEE
Q 035853 321 CNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPSSCTQDILGRLPSLQTFRV 400 (581)
Q Consensus 321 ~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l 400 (581)
..+.+|+.|++.+|.+..++ ++.++++|++|++++|.+.+.. .+..+++|+.+.+.++.......+..+++|+.+.+
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l 114 (227)
T d1h6ua2 38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDL 114 (227)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEEC
T ss_pred HHcCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeeccc--ccccccccccccccccccccccccccccccccccc
Confidence 34444445555444444442 3444555555555544443211 13444444444444333112233556666776666
Q ss_pred eeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccccCCCCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEe
Q 035853 401 HENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLK 480 (581)
Q Consensus 401 ~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l~lp~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~ 480 (581)
+++. ... ...+ ...+.+..+.++++.+.. ...+..+++|+.|.++
T Consensus 115 ~~~~--~~~--~~~~-----------------------------~~~~~~~~l~~~~~~~~~--~~~~~~~~~L~~L~l~ 159 (227)
T d1h6ua2 115 TSTQ--ITD--VTPL-----------------------------AGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIG 159 (227)
T ss_dssp TTSC--CCC--CGGG-----------------------------TTCTTCCEEECCSSCCCC--CGGGGGCTTCCEEECC
T ss_pred cccc--ccc--cchh-----------------------------ccccchhhhhchhhhhch--hhhhcccccccccccc
Confidence 6554 111 0112 233455555555555432 2346677888888888
Q ss_pred cCcccCceeeeCCCCCCCCcEEEecCCCcccccccCcccccccceEeeccCcCCCCCcccccCCCCccEEEeeC
Q 035853 481 KNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWW 554 (581)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 554 (581)
+|...+.. .++.+++|+.|++++| .++.++. ++.+|+|++|++++|+ ++.+| .++++++|+.|++++
T Consensus 160 ~n~~~~~~---~l~~l~~L~~L~Ls~n-~l~~l~~-l~~l~~L~~L~Ls~N~-lt~i~-~l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 160 NAQVSDLT---PLANLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNNQ-ISDVS-PLANTSNLFIVTLTN 226 (227)
T ss_dssp SSCCCCCG---GGTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTSC-CCBCG-GGTTCTTCCEEEEEE
T ss_pred ccccccch---hhcccccceecccCCC-ccCCChh-hcCCCCCCEEECcCCc-CCCCc-ccccCCCCCEEEeeC
Confidence 77654332 2567888888888887 5777765 6788999999999985 77776 478899999998874
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.61 E-value=1.6e-14 Score=143.58 Aligned_cols=93 Identities=24% Similarity=0.164 Sum_probs=44.8
Q ss_pred ceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcc
Q 035853 279 FLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSIT 358 (581)
Q Consensus 279 ~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~ 358 (581)
++++|+|+++.++.+|+. .++|++|++++|.|+.+|..+ .+|+.|+++++.+..++. + .++|++|++++|.
T Consensus 39 ~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~l~~l~~-l--p~~L~~L~L~~n~ 109 (353)
T d1jl5a_ 39 QAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSD-L--PPLLEYLGVSNNQ 109 (353)
T ss_dssp TCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCS-C--CTTCCEEECCSSC
T ss_pred CCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcccccch---hhhhhhhhhhcccchhhh-h--ccccccccccccc
Confidence 355555555555555532 234555555555555555432 345555555554444432 1 1235555555555
Q ss_pred cCCCCCCccCCCCCCcEeceecCC
Q 035853 359 LPAHPGKCCSSLENLNFISVLHPS 382 (581)
Q Consensus 359 ~~~~~p~~i~~l~~L~~L~l~~~~ 382 (581)
+. .+| .++.+++|+.|++.++.
T Consensus 110 l~-~lp-~~~~l~~L~~L~l~~~~ 131 (353)
T d1jl5a_ 110 LE-KLP-ELQNSSFLKIIDVDNNS 131 (353)
T ss_dssp CS-SCC-CCTTCTTCCEEECCSSC
T ss_pred cc-ccc-chhhhccceeecccccc
Confidence 43 333 23455555555554443
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.60 E-value=3.5e-15 Score=148.43 Aligned_cols=71 Identities=20% Similarity=0.185 Sum_probs=44.8
Q ss_pred CCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccCcccccccceEeeccCcCCCCCcccccCCCCccE
Q 035853 470 KLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTK 549 (581)
Q Consensus 470 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~ 549 (581)
.+++|++|++++|.+... + ..+++|+.|++++| .++++|. .+++|++|++++|+ ++.+|... .+|+.
T Consensus 282 ~~~~L~~L~Ls~N~l~~l--p---~~~~~L~~L~L~~N-~L~~l~~---~~~~L~~L~L~~N~-L~~lp~~~---~~L~~ 348 (353)
T d1jl5a_ 282 LPPSLEELNVSNNKLIEL--P---ALPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYNP-LREFPDIP---ESVED 348 (353)
T ss_dssp CCTTCCEEECCSSCCSCC--C---CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CSSCCCCC---TTCCE
T ss_pred cCCCCCEEECCCCccCcc--c---cccCCCCEEECCCC-cCCcccc---ccCCCCEEECcCCc-CCCCCccc---cccCe
Confidence 356777777777765421 2 34677777777776 4666654 24577777777776 66777532 35666
Q ss_pred EEee
Q 035853 550 LELW 553 (581)
Q Consensus 550 L~l~ 553 (581)
|.+.
T Consensus 349 L~~~ 352 (353)
T d1jl5a_ 349 LRMN 352 (353)
T ss_dssp EECC
T ss_pred eECc
Confidence 6553
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.58 E-value=6.1e-15 Score=134.23 Aligned_cols=102 Identities=14% Similarity=0.162 Sum_probs=55.0
Q ss_pred CcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEece
Q 035853 299 PLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISV 378 (581)
Q Consensus 299 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l 378 (581)
.+.++++|+++++.++.++ .++.+++|++|++++|.+..++. ++++++|++|++++|.+. .++ .++++++|+.|++
T Consensus 38 ~l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l 113 (199)
T d2omxa2 38 DLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTL 113 (199)
T ss_dssp HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEEC
T ss_pred HhcCCCEEECCCCCCCCcc-ccccCCCcCcCccccccccCccc-ccCCcccccccccccccc-ccc-ccccccccccccc
Confidence 3455555555555555543 35555566666665555555543 555556666666555543 222 3555556666655
Q ss_pred ecCCCcchhhhCCCCCCCeEEEeeec
Q 035853 379 LHPSSCTQDILGRLPSLQTFRVHENL 404 (581)
Q Consensus 379 ~~~~~~~~~~l~~l~~L~~L~l~~~~ 404 (581)
+++.......+..+++|+.|+++++.
T Consensus 114 ~~~~~~~~~~~~~l~~L~~L~l~~n~ 139 (199)
T d2omxa2 114 FNNQITDIDPLKNLTNLNRLELSSNT 139 (199)
T ss_dssp CSSCCCCCGGGTTCTTCSEEECCSSC
T ss_pred cccccccccccchhhhhHHhhhhhhh
Confidence 55542223345556666666666653
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.58 E-value=4.7e-15 Score=136.21 Aligned_cols=163 Identities=21% Similarity=0.219 Sum_probs=88.7
Q ss_pred CCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCC
Q 035853 277 FKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGS 356 (581)
Q Consensus 277 ~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~ 356 (581)
+..|+.|+++++.++.++ .+..+++|++|++++|.++.++ .++.+++|++|++++|.+..+|. +..+++|+.|++++
T Consensus 45 L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~i~~l~~-l~~l~~L~~L~l~~ 121 (210)
T d1h6ta2 45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEH 121 (210)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTT
T ss_pred hcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCccccCcc-ccccCcccccccccccccccccc-cccccccccccccc
Confidence 345556666666655443 3555666666666666665554 34556666666666665555553 55566666666655
Q ss_pred cccCCCCCCccCCCCCCcEeceecCCCcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCc
Q 035853 357 ITLPAHPGKCCSSLENLNFISVLHPSSCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQP 436 (581)
Q Consensus 357 ~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~ 436 (581)
|... .+ ..+..+++++.+++..+....+..+..+++|+.++++++.
T Consensus 122 ~~~~-~~-~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~-------------------------------- 167 (210)
T d1h6ta2 122 NGIS-DI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQ-------------------------------- 167 (210)
T ss_dssp SCCC-CC-GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC--------------------------------
T ss_pred cccc-cc-cccccccccccccccccccccccccccccccccccccccc--------------------------------
Confidence 5543 12 2344445555555444431112223334444444444442
Q ss_pred ccc-cCCCCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEe
Q 035853 437 SSI-VLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLK 480 (581)
Q Consensus 437 l~l-~lp~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~ 480 (581)
+ .++.+..+++|++|++++|.++. .+.++++++|++|+|+
T Consensus 168 --l~~i~~l~~l~~L~~L~Ls~N~i~~--l~~l~~l~~L~~L~Ls 208 (210)
T d1h6ta2 168 --ISDIVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELF 208 (210)
T ss_dssp --CCCCGGGTTCTTCCEEECCSSCCCB--CGGGTTCTTCSEEEEE
T ss_pred --ccccccccCCCCCCEEECCCCCCCC--ChhhcCCCCCCEEEcc
Confidence 2 22224456677777777776643 3467788888888886
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=1.4e-16 Score=153.88 Aligned_cols=199 Identities=18% Similarity=0.198 Sum_probs=96.5
Q ss_pred CcCCCcEEeccCCCCc--ccChhhhcccCCcEEEecCCccc-ccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcE
Q 035853 299 PLLLLKYLVLNIPSLK--HLPSSLCNLLSLHTLDMRWSYIH-HTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNF 375 (581)
Q Consensus 299 ~l~~Lr~L~L~~~~i~--~lp~~i~~L~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 375 (581)
....|++|+++++.+. .++..+..+++|++|++++|.+. ..+..++++++|++|++++|.....
T Consensus 44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd------------- 110 (284)
T d2astb2 44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE------------- 110 (284)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCH-------------
T ss_pred cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccc-------------
Confidence 3345555555555443 23333445555555555555332 2333444555555555554422110
Q ss_pred eceecCCCcchhhhCCCCCCCeEEEeeecccchhchhhhcCC-CCCCCEEEeecCCcccCCcccc---cCC-CCCCCCCc
Q 035853 376 ISVLHPSSCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCP-LLHLESLKLVDERTIALQPSSI---VLP-EYQFPPRL 450 (581)
Q Consensus 376 L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~-~~~L~~L~l~~~~~i~L~~l~l---~lp-~~~~l~~L 450 (581)
..+.....++++|++|++++|.......+...+.. .++|+.|+++++..- + .++ ....+++|
T Consensus 111 -------~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~------i~~~~l~~l~~~~~~L 177 (284)
T d2astb2 111 -------FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN------LQKSDLSTLVRRCPNL 177 (284)
T ss_dssp -------HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGG------SCHHHHHHHHHHCTTC
T ss_pred -------cccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccc------cccccccccccccccc
Confidence 01112233456666666666541111222222222 345666666542100 0 111 12346677
Q ss_pred cEEEEeecc-CCCCCcccccCCCCCCeEEEecCc-ccCceeeeCCCCCCCCcEEEecCCCcccccccCcccccccc
Q 035853 451 IELSLSNTE-LKYDPMPALEKLPHLRVLKLKKNS-FFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLE 524 (581)
Q Consensus 451 ~~L~L~~~~-l~~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~ 524 (581)
++|++++|. +++..+..++++++|++|++++|. +++.. ...+..+|+|+.|++.+|-.-..+......+|+|+
T Consensus 178 ~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~-l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~ 252 (284)
T d2astb2 178 VHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET-LLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ 252 (284)
T ss_dssp SEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG-GGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE
T ss_pred cccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHH-HHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc
Confidence 777777653 455566667777788888887754 33332 22345677777777777632223333334455554
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.54 E-value=2.4e-14 Score=131.34 Aligned_cols=164 Identities=22% Similarity=0.217 Sum_probs=129.6
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcc
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNL 323 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L 323 (581)
+.+++.|.+.++.... ...+..+++|++|++++|.++.++ .++.+++|++|++++|+++.+| .++.+
T Consensus 45 L~~L~~L~l~~~~i~~-----------l~~l~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l 111 (210)
T d1h6ta2 45 LNSIDQIIANNSDIKS-----------VQGIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDLS-SLKDL 111 (210)
T ss_dssp HHTCCEEECTTSCCCC-----------CTTGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCGG-GGTTC
T ss_pred hcCccEEECcCCCCCC-----------chhHhhCCCCCEEeCCCccccCcc-ccccCccccccccccccccccc-ccccc
Confidence 4567777777766533 234678999999999999988776 4788999999999999999887 58889
Q ss_pred cCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEEEee
Q 035853 324 LSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFRVHE 402 (581)
Q Consensus 324 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~ 402 (581)
++|+.|++++|.+..++ .+..+++|+.+++++|.+.. +..+..+++|+.+++.++. ..+ ..+.++++|+.|++++
T Consensus 112 ~~L~~L~l~~~~~~~~~-~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~~l~~l~~L~~L~Ls~ 187 (210)
T d1h6ta2 112 KKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSK 187 (210)
T ss_dssp TTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-GGGTTCTTCCEEECCS
T ss_pred ccccccccccccccccc-cccccccccccccccccccc--ccccccccccccccccccccccc-ccccCCCCCCEEECCC
Confidence 99999999999877776 47889999999999988753 3457788999999998888 443 3588899999999998
Q ss_pred ecccchhchhhhcCCCCCCCEEEeec
Q 035853 403 NLSSYQSMLSNNLCPLLHLESLKLVD 428 (581)
Q Consensus 403 ~~~~~~~~l~~~l~~~~~L~~L~l~~ 428 (581)
|. ...++ .+..+++|+.|++++
T Consensus 188 N~---i~~l~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 188 NH---ISDLR-ALAGLKNLDVLELFS 209 (210)
T ss_dssp SC---CCBCG-GGTTCTTCSEEEEEE
T ss_pred CC---CCCCh-hhcCCCCCCEEEccC
Confidence 85 33444 577788888888764
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.51 E-value=5.5e-14 Score=127.75 Aligned_cols=125 Identities=18% Similarity=0.263 Sum_probs=59.0
Q ss_pred hccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEee
Q 035853 274 CKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLN 353 (581)
Q Consensus 274 ~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~ 353 (581)
+..+++|++|++++|.++.++. ++++++|++|++++|.+..+| .++++++|+.|++++|....++ .+..+++|+.|+
T Consensus 58 l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~ 134 (199)
T d2omxa2 58 VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLE 134 (199)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEE
T ss_pred cccCCCcCcCccccccccCccc-ccCCccccccccccccccccc-cccccccccccccccccccccc-ccchhhhhHHhh
Confidence 3445555555555555544432 455555555555555544444 2445555555555555433332 244455555555
Q ss_pred cCCcccCCCCCCccCCCCCCcEeceecCCCcchhhhCCCCCCCeEEEeee
Q 035853 354 FGSITLPAHPGKCCSSLENLNFISVLHPSSCTQDILGRLPSLQTFRVHEN 403 (581)
Q Consensus 354 l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~ 403 (581)
+++|.+. .+ +.+..+++|+.|++.++.-.....++++++|+.|+++++
T Consensus 135 l~~n~l~-~~-~~l~~~~~L~~L~l~~n~l~~l~~l~~l~~L~~L~ls~N 182 (199)
T d2omxa2 135 LSSNTIS-DI-SALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSN 182 (199)
T ss_dssp CCSSCCC-CC-GGGTTCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSS
T ss_pred hhhhhhc-cc-ccccccccccccccccccccCCccccCCCCCCEEECCCC
Confidence 5555443 12 234445555555554444111123445555555555554
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=3.9e-14 Score=133.11 Aligned_cols=100 Identities=11% Similarity=0.167 Sum_probs=65.6
Q ss_pred eEEEecCcccccCCCcccCcCCCcEEeccCCCCcccCh-hhhcccCCcEEEecCCcccc-cch-hhhcCCCCcEeecCCc
Q 035853 281 RLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPS-SLCNLLSLHTLDMRWSYIHH-TPD-EIWKMNELRHLNFGSI 357 (581)
Q Consensus 281 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~-lp~-~i~~l~~L~~L~l~~~ 357 (581)
++++.++..++.+|..+. .++++|++++|.++.+|. .+.++++|++|++++|.+.. +|. .+..+++++++.+..+
T Consensus 11 ~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~ 88 (242)
T d1xwdc1 11 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 88 (242)
T ss_dssp SEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred CEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence 567777777777776654 477888888888877775 46778888888888775433 333 3556777777776543
Q ss_pred -ccCCCCCCccCCCCCCcEeceecCC
Q 035853 358 -TLPAHPGKCCSSLENLNFISVLHPS 382 (581)
Q Consensus 358 -~~~~~~p~~i~~l~~L~~L~l~~~~ 382 (581)
.+....+..+.++++|+++++.++.
T Consensus 89 n~l~~~~~~~~~~l~~L~~l~l~~~~ 114 (242)
T d1xwdc1 89 NNLLYINPEAFQNLPNLQYLLISNTG 114 (242)
T ss_dssp TTCCEECTTSEECCTTCCEEEEESCC
T ss_pred ccccccccccccccccccccccchhh
Confidence 3333344445666677777666655
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=1.4e-15 Score=146.67 Aligned_cols=201 Identities=14% Similarity=0.129 Sum_probs=118.8
Q ss_pred cccCCcEEEecCCccc--ccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCCCcchhhhCCCCCCCeEE
Q 035853 322 NLLSLHTLDMRWSYIH--HTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPSSCTQDILGRLPSLQTFR 399 (581)
Q Consensus 322 ~L~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~ 399 (581)
...+|++||+++|.+. .++..+.++++|++|++++|.+. ...+..++.+++|+.|+
T Consensus 44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~----------------------~~~~~~l~~~~~L~~L~ 101 (284)
T d2astb2 44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS----------------------DPIVNTLAKNSNLVRLN 101 (284)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCC----------------------HHHHHHHTTCTTCSEEE
T ss_pred cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCC----------------------cHHHHHHhcCCCCcCcc
Confidence 3445666666655332 23333445555555555555432 23445566777888888
Q ss_pred EeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccccCC-CC-CCCCCccEEEEeecc--CCCCCcc-cccCCCCC
Q 035853 400 VHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVLP-EY-QFPPRLIELSLSNTE--LKYDPMP-ALEKLPHL 474 (581)
Q Consensus 400 l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l~lp-~~-~~l~~L~~L~L~~~~--l~~~~~~-~l~~l~~L 474 (581)
+++|.......+......+++|++|+++++..+. . -.++ .+ ..+++|+.|++++|. ++..... ...++|+|
T Consensus 102 Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~--~--~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L 177 (284)
T d2astb2 102 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT--E--KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNL 177 (284)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCC--H--HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTC
T ss_pred ccccccccccccchhhHHHHhccccccccccccc--c--ccchhhhcccccccchhhhcccccccccccccccccccccc
Confidence 8877522223344444567899999998843210 0 0111 11 235788999998763 3332232 24568899
Q ss_pred CeEEEecCcccCceeeeCCCCCCCCcEEEecCCCccccc-ccCcccccccceEeeccCcCCCCCcccccCCCCcc
Q 035853 475 RVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEW-TMENDAMPKLESLIINPCAYLKILPEELWRIKSLT 548 (581)
Q Consensus 475 ~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~ 548 (581)
++|++++|..........+..+++|++|++++|..+..- ...++.+|+|+.|++++|-.-..++.....+|+|+
T Consensus 178 ~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~ 252 (284)
T d2astb2 178 VHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ 252 (284)
T ss_dssp SEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE
T ss_pred cccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc
Confidence 999998775433322334567889999999988776543 33467788999999988844344444444566665
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=1.8e-13 Score=128.38 Aligned_cols=100 Identities=13% Similarity=0.162 Sum_probs=78.0
Q ss_pred CcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchh-hhcCCCCcEeecCCcccCCCCC-CccCCCCCCcEeceec
Q 035853 303 LKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDE-IWKMNELRHLNFGSITLPAHPG-KCCSSLENLNFISVLH 380 (581)
Q Consensus 303 Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~ 380 (581)
.+.++.++.+++.+|+.+. .++++|++++|.+..+|.. +.++++|++|++++|.+...++ ..+.++++++++....
T Consensus 10 ~~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~ 87 (242)
T d1xwdc1 10 NRVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 87 (242)
T ss_dssp SSEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred CCEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence 3788888888999997763 6899999999999999874 6889999999999998875544 3467788888888766
Q ss_pred CC---CcchhhhCCCCCCCeEEEeeec
Q 035853 381 PS---SCTQDILGRLPSLQTFRVHENL 404 (581)
Q Consensus 381 ~~---~~~~~~l~~l~~L~~L~l~~~~ 404 (581)
+. ...+..+..+++|+.++++++.
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~ 114 (242)
T d1xwdc1 88 ANNLLYINPEAFQNLPNLQYLLISNTG 114 (242)
T ss_dssp CTTCCEECTTSEECCTTCCEEEEESCC
T ss_pred cccccccccccccccccccccccchhh
Confidence 54 3333446777888888887764
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.43 E-value=2.2e-13 Score=113.13 Aligned_cols=99 Identities=22% Similarity=0.245 Sum_probs=80.1
Q ss_pred eEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccC
Q 035853 281 RLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLP 360 (581)
Q Consensus 281 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~ 360 (581)
|+|++++++++.++ .+.++++|++|++++|.++.+|+.++.+++|++|++++|.+..+|. +..+++|++|++++|.+.
T Consensus 1 R~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~-~~~l~~L~~L~l~~N~i~ 78 (124)
T d1dcea3 1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG-VANLPRLQELLLCNNRLQ 78 (124)
T ss_dssp SEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCC
T ss_pred CEEEcCCCCCCCCc-ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCc-cccccccCeEECCCCccC
Confidence 68899999988776 4888889999999999999888888889999999999998888874 888899999999888876
Q ss_pred CCCC--CccCCCCCCcEeceecCC
Q 035853 361 AHPG--KCCSSLENLNFISVLHPS 382 (581)
Q Consensus 361 ~~~p--~~i~~l~~L~~L~l~~~~ 382 (581)
. +| ..++.+++|+.|++.++.
T Consensus 79 ~-~~~~~~l~~~~~L~~L~l~~N~ 101 (124)
T d1dcea3 79 Q-SAAIQPLVSCPRLVLLNLQGNS 101 (124)
T ss_dssp S-SSTTGGGGGCTTCCEEECTTSG
T ss_pred C-CCCchhhcCCCCCCEEECCCCc
Confidence 3 32 346667777777766654
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=7e-15 Score=151.58 Aligned_cols=314 Identities=15% Similarity=0.069 Sum_probs=159.9
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccc-----cCCCccc-CcCCCcEEeccCCCCcc--
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLD-----EYPAGIN-PLLLLKYLVLNIPSLKH-- 315 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~-----~lp~~i~-~l~~Lr~L~L~~~~i~~-- 315 (581)
++++|+|.+.++.... ... ... ...+..+++|+.|+|++|.++ .+...+. ...+|++|++++|.++.
T Consensus 26 l~~l~~L~L~~~~i~~-~~~-~~l---~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~ 100 (460)
T d1z7xw1 26 LQQCQVVRLDDCGLTE-ARC-KDI---SSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAG 100 (460)
T ss_dssp HTTCSEEEEESSCCCH-HHH-HHH---HHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGG
T ss_pred CCCCCEEEeCCCCCCH-HHH-HHH---HHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccc
Confidence 6677777777665422 001 122 344566777777777777654 1222222 22357777777776652
Q ss_pred ---cChhhhcccCCcEEEecCCccccc-----chh-----------------------------hhcCCCCcEeecCCcc
Q 035853 316 ---LPSSLCNLLSLHTLDMRWSYIHHT-----PDE-----------------------------IWKMNELRHLNFGSIT 358 (581)
Q Consensus 316 ---lp~~i~~L~~L~~L~l~~~~l~~l-----p~~-----------------------------i~~l~~L~~L~l~~~~ 358 (581)
++..+..+++|++|++++|.+... +.. +.....++.++++++.
T Consensus 101 ~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~ 180 (460)
T d1z7xw1 101 CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 180 (460)
T ss_dssp HHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred cccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccccccccccccccccccccc
Confidence 344556667777777776644221 110 1122334444333332
Q ss_pred cCCC----CCCcc-CCCCCCcEeceecCC------CcchhhhCCCCCCCeEEEeeecc---cchhchhhhcCCCCCCCEE
Q 035853 359 LPAH----PGKCC-SSLENLNFISVLHPS------SCTQDILGRLPSLQTFRVHENLS---SYQSMLSNNLCPLLHLESL 424 (581)
Q Consensus 359 ~~~~----~p~~i-~~l~~L~~L~l~~~~------~~~~~~l~~l~~L~~L~l~~~~~---~~~~~l~~~l~~~~~L~~L 424 (581)
.... ....+ ..-.....+....+. ......+...+.++.+.+.++.. ...............++.+
T Consensus 181 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l 260 (460)
T d1z7xw1 181 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTL 260 (460)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred cccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccccchhhccccccccccccc
Confidence 2100 00000 011123333333333 11222334456677777766641 0112233344455667777
Q ss_pred EeecCCcc---------------cCCccc-----c------cCC-C-CCCCCCccEEEEeeccCCCCCcccc----cCCC
Q 035853 425 KLVDERTI---------------ALQPSS-----I------VLP-E-YQFPPRLIELSLSNTELKYDPMPAL----EKLP 472 (581)
Q Consensus 425 ~l~~~~~i---------------~L~~l~-----l------~lp-~-~~~l~~L~~L~L~~~~l~~~~~~~l----~~l~ 472 (581)
+++++.-. .+..+. + .+. . ....+.|+.+.+++|.+.......+ ...+
T Consensus 261 ~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~ 340 (460)
T d1z7xw1 261 WIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR 340 (460)
T ss_dssp ECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCS
T ss_pred ccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhccccccccc
Confidence 77653210 011100 1 111 0 1234578888888887665443333 4567
Q ss_pred CCCeEEEecCcccCceee---eC-CCCCCCCcEEEecCCCcccc-----cccCcccccccceEeeccCcCCC----CCcc
Q 035853 473 HLRVLKLKKNSFFGRKLV---CS-SGGFPSLKVMHLKSMFWLEE-----WTMENDAMPKLESLIINPCAYLK----ILPE 539 (581)
Q Consensus 473 ~L~~L~L~~~~~~~~~~~---~~-~~~~~~L~~L~l~~~~~l~~-----l~~~~~~l~~L~~L~l~~c~~l~----~lp~ 539 (581)
+|++|+|++|.+.++... .. ....+.|++|++++| .++. ++..+..+++|++|+|++|+... .+..
T Consensus 341 ~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~ 419 (460)
T d1z7xw1 341 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419 (460)
T ss_dssp SCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHH
T ss_pred chhhhheeeecccCcccchhhhhhhcccCCCCEEECCCC-CCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHH
Confidence 899999988876543211 11 234567999999988 4543 33445567889999999886432 1223
Q ss_pred ccc-CCCCccEEEeeCCC--HHHHHHH
Q 035853 540 ELW-RIKSLTKLELWWPR--FELRETL 563 (581)
Q Consensus 540 ~l~-~l~~L~~L~l~~c~--~~~~~~~ 563 (581)
.+. +...|+.|.+.++. .+..+.+
T Consensus 420 ~l~~~~~~L~~l~l~~~~~~~~~~~~l 446 (460)
T d1z7xw1 420 SVRQPGCLLEQLVLYDIYWSEEMEDRL 446 (460)
T ss_dssp HHTSTTCCCCEEECTTCCCCHHHHHHH
T ss_pred HHHhCCCccCEEECCCCCCCHHHHHHH
Confidence 333 34478999998887 3444444
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=4.7e-13 Score=116.75 Aligned_cols=127 Identities=16% Similarity=0.147 Sum_probs=93.9
Q ss_pred HhccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhh-hcCCCCcE
Q 035853 273 ICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEI-WKMNELRH 351 (581)
Q Consensus 273 ~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i-~~l~~L~~ 351 (581)
.+.++..||.|+|++|+++.++..+..+++|++|++++|.++.++ .++.+++|++|++++|.+..+|..+ ..+++|++
T Consensus 13 ~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~ 91 (162)
T d1a9na_ 13 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 91 (162)
T ss_dssp EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred hccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCcccccccccccc
Confidence 355677888999999988888766677888999999998888885 5788889999999998888887664 56888999
Q ss_pred eecCCcccCCCCC--CccCCCCCCcEeceecCC-Ccch----hhhCCCCCCCeEEEe
Q 035853 352 LNFGSITLPAHPG--KCCSSLENLNFISVLHPS-SCTQ----DILGRLPSLQTFRVH 401 (581)
Q Consensus 352 L~l~~~~~~~~~p--~~i~~l~~L~~L~l~~~~-~~~~----~~l~~l~~L~~L~l~ 401 (581)
|++++|.+.. ++ ..+..+++|++|++.++. ...+ ..+..+++|+.|+-.
T Consensus 92 L~L~~N~i~~-~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~ 147 (162)
T d1a9na_ 92 LILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ 147 (162)
T ss_dssp EECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred ceeccccccc-cccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCC
Confidence 9998888753 33 245667777777777765 2222 235566677766533
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.31 E-value=1.6e-12 Score=107.81 Aligned_cols=101 Identities=17% Similarity=0.146 Sum_probs=88.7
Q ss_pred cEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCc
Q 035853 248 HSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLH 327 (581)
Q Consensus 248 r~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~ 327 (581)
|.|.+.++.... .+.+..+++|++|++++|.++.+|..++.+++|++|++++|.++.+| .++++++|+
T Consensus 1 R~L~Ls~n~l~~-----------l~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~ 68 (124)
T d1dcea3 1 RVLHLAHKDLTV-----------LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQ 68 (124)
T ss_dssp SEEECTTSCCSS-----------CCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCC
T ss_pred CEEEcCCCCCCC-----------CcccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccC
Confidence 567777776643 24578899999999999999999989999999999999999999987 599999999
Q ss_pred EEEecCCcccccch--hhhcCCCCcEeecCCcccC
Q 035853 328 TLDMRWSYIHHTPD--EIWKMNELRHLNFGSITLP 360 (581)
Q Consensus 328 ~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~ 360 (581)
+|++++|.+..+|. .++.+++|++|++++|.+.
T Consensus 69 ~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 69 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 103 (124)
T ss_dssp EEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred eEECCCCccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence 99999999988874 5788999999999999885
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=5.5e-12 Score=109.81 Aligned_cols=127 Identities=11% Similarity=0.063 Sum_probs=106.2
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhh-hc
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSL-CN 322 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i-~~ 322 (581)
..++|.|.+.++.... . +..+..+++|++|++++|.++.++ .+..+++|++|++++|.++.+|+.+ ..
T Consensus 17 ~~~lr~L~L~~n~I~~-------i---~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~ 85 (162)
T d1a9na_ 17 AVRDRELDLRGYKIPV-------I---ENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQA 85 (162)
T ss_dssp TTSCEEEECTTSCCCS-------C---CCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHH
T ss_pred cCcCcEEECCCCCCCc-------c---CccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCcccccc
Confidence 6688999999988744 2 345577899999999999999885 5899999999999999999888664 67
Q ss_pred ccCCcEEEecCCcccccch--hhhcCCCCcEeecCCcccCCCCCC----ccCCCCCCcEeceecCC
Q 035853 323 LLSLHTLDMRWSYIHHTPD--EIWKMNELRHLNFGSITLPAHPGK----CCSSLENLNFISVLHPS 382 (581)
Q Consensus 323 L~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~----~i~~l~~L~~L~l~~~~ 382 (581)
+++|++|++++|.+..++. .+..+++|++|++++|.+. ..|. .+..+++|+.|+.....
T Consensus 86 l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD~~~i~ 150 (162)
T d1a9na_ 86 LPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK 150 (162)
T ss_dssp CTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred ccccccceeccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeCCCCCC
Confidence 9999999999999888874 5788999999999999886 3442 46788999999876654
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=4.8e-13 Score=137.52 Aligned_cols=303 Identities=16% Similarity=0.081 Sum_probs=173.2
Q ss_pred CcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccc-----cCCCcccCcCCCcEEeccCCCCcc----
Q 035853 245 TYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLD-----EYPAGINPLLLLKYLVLNIPSLKH---- 315 (581)
Q Consensus 245 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~-----~lp~~i~~l~~Lr~L~L~~~~i~~---- 315 (581)
.+|++|.+.++.... ... ...+..++++|+|+|++|.++ .+...+..+++|++|+|++|.|+.
T Consensus 2 ~~l~~ld~~~~~i~~-----~~~---~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~ 73 (460)
T d1z7xw1 2 LDIQSLDIQCEELSD-----ARW---AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVH 73 (460)
T ss_dssp EEEEEEEEESCCCCH-----HHH---HHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHH
T ss_pred CCCCEEEeeCCcCCh-----HHH---HHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHH
Confidence 478999998887754 233 567788999999999999976 344556788999999999998862
Q ss_pred -cChhhh-cccCCcEEEecCCcccc-----cchhhhcCCCCcEeecCCcccCCC----CCCcc-----------------
Q 035853 316 -LPSSLC-NLLSLHTLDMRWSYIHH-----TPDEIWKMNELRHLNFGSITLPAH----PGKCC----------------- 367 (581)
Q Consensus 316 -lp~~i~-~L~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~~----~p~~i----------------- 367 (581)
+...+. ...+|++|++++|.++. ++..+..+++|++|++++|.+... ++..+
T Consensus 74 ~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 153 (460)
T d1z7xw1 74 CVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL 153 (460)
T ss_dssp HHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhccccccccccccccccccc
Confidence 222222 23579999999997754 456677899999999999876431 00000
Q ss_pred ------------CCCCCCcEeceecCC--C----cchhhhC-CCCCCCeEEEeeecc--cchhchhhhcCCCCCCCEEEe
Q 035853 368 ------------SSLENLNFISVLHPS--S----CTQDILG-RLPSLQTFRVHENLS--SYQSMLSNNLCPLLHLESLKL 426 (581)
Q Consensus 368 ------------~~l~~L~~L~l~~~~--~----~~~~~l~-~l~~L~~L~l~~~~~--~~~~~l~~~l~~~~~L~~L~l 426 (581)
.....++.+.+..+. . .....+. .-.....+.+..+.. .........+.....++.+.+
T Consensus 154 ~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~ 233 (460)
T d1z7xw1 154 SAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELAL 233 (460)
T ss_dssp BGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEEC
T ss_pred chhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccch
Confidence 111233333333222 0 0000111 111233444444330 111122233445567788887
Q ss_pred ecCCcc----------------cCCcccc-----------cCC-CCCCCCCccEEEEeeccCCCCCcccc-----cCCCC
Q 035853 427 VDERTI----------------ALQPSSI-----------VLP-EYQFPPRLIELSLSNTELKYDPMPAL-----EKLPH 473 (581)
Q Consensus 427 ~~~~~i----------------~L~~l~l-----------~lp-~~~~l~~L~~L~L~~~~l~~~~~~~l-----~~l~~ 473 (581)
..+... .++.+.+ .++ ++...+.++.+++++|.+.......+ ...+.
T Consensus 234 ~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~ 313 (460)
T d1z7xw1 234 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQ 313 (460)
T ss_dssp CSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCC
T ss_pred hhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccc
Confidence 763210 1111100 000 12234455555555554332111111 12346
Q ss_pred CCeEEEecCcccCceee---eCCCCCCCCcEEEecCCCcccc-----cccCc-ccccccceEeeccCcCCC----CCccc
Q 035853 474 LRVLKLKKNSFFGRKLV---CSSGGFPSLKVMHLKSMFWLEE-----WTMEN-DAMPKLESLIINPCAYLK----ILPEE 540 (581)
Q Consensus 474 L~~L~L~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~l~~-----l~~~~-~~l~~L~~L~l~~c~~l~----~lp~~ 540 (581)
|+.+.++++.+...... ......++|++|+|+++. +.. ++..+ ...+.|++|++++|.... .++..
T Consensus 314 L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~-i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 392 (460)
T d1z7xw1 314 LESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT 392 (460)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred cccccccccchhhhhhhhcccccccccchhhhheeeec-ccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHH
Confidence 77777776655433211 112345689999999874 432 22222 246779999999997432 35566
Q ss_pred ccCCCCccEEEeeCCC
Q 035853 541 LWRIKSLTKLELWWPR 556 (581)
Q Consensus 541 l~~l~~L~~L~l~~c~ 556 (581)
+..+++|++|++++|+
T Consensus 393 l~~~~~L~~L~Ls~N~ 408 (460)
T d1z7xw1 393 LLANHSLRELDLSNNC 408 (460)
T ss_dssp HHHCCCCCEEECCSSS
T ss_pred HhcCCCCCEEECCCCc
Confidence 7788999999999997
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.12 E-value=8.8e-11 Score=105.41 Aligned_cols=122 Identities=20% Similarity=0.238 Sum_probs=92.7
Q ss_pred eEEEecCcccccCCCcccCcCCCcEEeccCCCCcc-c-ChhhhcccCCcEEEecCCcccccch-hhhcCCCCcEeecCCc
Q 035853 281 RLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKH-L-PSSLCNLLSLHTLDMRWSYIHHTPD-EIWKMNELRHLNFGSI 357 (581)
Q Consensus 281 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~-l-p~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~ 357 (581)
++++.++++++.+|..+. .++++|+|++|.|+. + +..+.++++|+.|++++|.+..++. .+..+++|++|++++|
T Consensus 11 ~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N 88 (192)
T d1w8aa_ 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence 578888888888888775 588899999998863 4 3456888899999998887766654 4677888999999998
Q ss_pred ccCCCCCCccCCCCCCcEeceecCC-Ccch-hhhCCCCCCCeEEEeeec
Q 035853 358 TLPAHPGKCCSSLENLNFISVLHPS-SCTQ-DILGRLPSLQTFRVHENL 404 (581)
Q Consensus 358 ~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~ 404 (581)
.+....|..|.++++|++|++.++. ..++ ..+..+++|++|+++++.
T Consensus 89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~ 137 (192)
T d1w8aa_ 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred cccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccc
Confidence 8875555567888888888888877 4443 346677777777777664
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.09 E-value=1.5e-12 Score=117.61 Aligned_cols=109 Identities=18% Similarity=0.164 Sum_probs=77.3
Q ss_pred HHHhccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCc
Q 035853 271 NAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELR 350 (581)
Q Consensus 271 ~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~ 350 (581)
+..+..+++|+.|+|++|.++.++ .+..+++|++|++++|.++.+|.....+++|++|++++|.+..++ .+..+++|+
T Consensus 41 ~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l~~L~ 118 (198)
T d1m9la_ 41 DATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLR 118 (198)
T ss_dssp HHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHH-HHHHHHHSS
T ss_pred hhHHhcccccceeECcccCCCCcc-cccCCccccChhhcccccccccccccccccccccccccccccccc-ccccccccc
Confidence 456777888888888888877765 577788888888888888777766666677888888888777765 377778888
Q ss_pred EeecCCcccCCCCC--CccCCCCCCcEeceecCC
Q 035853 351 HLNFGSITLPAHPG--KCCSSLENLNFISVLHPS 382 (581)
Q Consensus 351 ~L~l~~~~~~~~~p--~~i~~l~~L~~L~l~~~~ 382 (581)
+|++++|.+.. ++ ..+..+++|+.|++.++.
T Consensus 119 ~L~L~~N~i~~-~~~~~~l~~l~~L~~L~L~~N~ 151 (198)
T d1m9la_ 119 VLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp EEEESEEECCC-HHHHHHHTTTTTCSEEEECSSH
T ss_pred ccccccchhcc-ccccccccCCCccceeecCCCc
Confidence 88888877652 22 235555666666655543
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.09 E-value=3.9e-12 Score=125.84 Aligned_cols=250 Identities=19% Similarity=0.134 Sum_probs=133.4
Q ss_pred HHhccCCceeEEEecCcccc-----cCCCcccCcCCCcEEeccCCCCcc-----------cChhhhcccCCcEEEecCCc
Q 035853 272 AICKWFKFLRLLDLGTIVLD-----EYPAGINPLLLLKYLVLNIPSLKH-----------LPSSLCNLLSLHTLDMRWSY 335 (581)
Q Consensus 272 ~~~~~~~~Lr~L~L~~~~l~-----~lp~~i~~l~~Lr~L~L~~~~i~~-----------lp~~i~~L~~L~~L~l~~~~ 335 (581)
..+.....|+.|+|++|.+. .+...+...++|+.|+++++.... +...+..+++|+.|++++|.
T Consensus 25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~ 104 (344)
T d2ca6a1 25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 104 (344)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc
Confidence 45666777888888887764 233455667778888877654321 22334556777788877775
Q ss_pred ccc-----cchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCCCcchhhhCCCCCCCeEEEeeec--ccch
Q 035853 336 IHH-----TPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPSSCTQDILGRLPSLQTFRVHENL--SSYQ 408 (581)
Q Consensus 336 l~~-----lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~ 408 (581)
+.. +...+...++|++|++++|.+.......++. .++.+ .........+.|+.+.++++. ....
T Consensus 105 i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~--~l~~~-------~~~~~~~~~~~L~~l~l~~n~i~~~~~ 175 (344)
T d2ca6a1 105 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--ALQEL-------AVNKKAKNAPPLRSIICGRNRLENGSM 175 (344)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH--HHHHH-------HHHHHHHTCCCCCEEECCSSCCTGGGH
T ss_pred cccccccchhhhhcccccchheecccccccccccccccc--ccccc-------ccccccccCcccceeeccccccccccc
Confidence 533 3444556777777777776542100000000 00000 000111233445555555443 1122
Q ss_pred hchhhhcCCCCCCCEEEeecCCcccCCcccc-c-CC-CCCCCCCccEEEEeeccCCCC----CcccccCCCCCCeEEEec
Q 035853 409 SMLSNNLCPLLHLESLKLVDERTIALQPSSI-V-LP-EYQFPPRLIELSLSNTELKYD----PMPALEKLPHLRVLKLKK 481 (581)
Q Consensus 409 ~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~-lp-~~~~l~~L~~L~L~~~~l~~~----~~~~l~~l~~L~~L~L~~ 481 (581)
..+...+...++|+.|+++.+. + ....+ . +. .+..+++|+.|++++|.++.. ....+..+++|++|++++
T Consensus 176 ~~l~~~l~~~~~L~~L~L~~n~-i--~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~ 252 (344)
T d2ca6a1 176 KEWAKTFQSHRLLHTVKMVQNG-I--RPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND 252 (344)
T ss_dssp HHHHHHHHHCTTCCEEECCSSC-C--CHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred ccccchhhhhhhhccccccccc-c--cccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhc
Confidence 2333444445556666655532 0 00000 0 11 244566777777777765432 224466788888888888
Q ss_pred CcccCceeee-----CCCCCCCCcEEEecCCCcccc-----cccCc-ccccccceEeeccCcCC
Q 035853 482 NSFFGRKLVC-----SSGGFPSLKVMHLKSMFWLEE-----WTMEN-DAMPKLESLIINPCAYL 534 (581)
Q Consensus 482 ~~~~~~~~~~-----~~~~~~~L~~L~l~~~~~l~~-----l~~~~-~~l~~L~~L~l~~c~~l 534 (581)
|.+.+..... .....+.|++|++++|. +.. +...+ ..+++|+.|++++|...
T Consensus 253 n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~ 315 (344)
T d2ca6a1 253 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315 (344)
T ss_dssp CCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred CccCchhhHHHHHHhhhccCCCCCEEECCCCc-CChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence 7765443211 11235778899998874 432 22223 25788999999988753
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.08 E-value=1.8e-12 Score=117.09 Aligned_cols=123 Identities=17% Similarity=0.177 Sum_probs=95.1
Q ss_pred ceeEEEecCc--ccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCC
Q 035853 279 FLRLLDLGTI--VLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGS 356 (581)
Q Consensus 279 ~Lr~L~L~~~--~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~ 356 (581)
.++.+++.+. .++.++.++..+++|++|++++|.|+.++ .++.+++|++|++++|.+..+|.....+++|++|++++
T Consensus 24 ~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~ 102 (198)
T d1m9la_ 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY 102 (198)
T ss_dssp TCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSE
T ss_pred ccceeeeecccCchhhhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhccccccccccccccccccccccccc
Confidence 3555666654 25577778888999999999999999886 68899999999999998888887666677899999999
Q ss_pred cccCCCCCCccCCCCCCcEeceecCC-Ccch--hhhCCCCCCCeEEEeeec
Q 035853 357 ITLPAHPGKCCSSLENLNFISVLHPS-SCTQ--DILGRLPSLQTFRVHENL 404 (581)
Q Consensus 357 ~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~--~~l~~l~~L~~L~l~~~~ 404 (581)
|.+.. + ..+..+++|+.|+++++. ..+. ..+..+++|+.|+++++.
T Consensus 103 N~i~~-l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~ 151 (198)
T d1m9la_ 103 NQIAS-L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp EECCC-H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred ccccc-c-ccccccccccccccccchhccccccccccCCCccceeecCCCc
Confidence 98763 3 346677788888887776 3332 457778888888888774
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.03 E-value=9.6e-12 Score=122.97 Aligned_cols=241 Identities=17% Similarity=0.147 Sum_probs=148.2
Q ss_pred cCCCcccCcCCCcEEeccCCCCc-----ccChhhhcccCCcEEEecCCccccc-----------chhhhcCCCCcEeecC
Q 035853 292 EYPAGINPLLLLKYLVLNIPSLK-----HLPSSLCNLLSLHTLDMRWSYIHHT-----------PDEIWKMNELRHLNFG 355 (581)
Q Consensus 292 ~lp~~i~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~l~~l-----------p~~i~~l~~L~~L~l~ 355 (581)
.+...+.+...|+.|+|++|.+. .+...+...++|+.|+++++..... ...+..+++|+.|+++
T Consensus 22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~ 101 (344)
T d2ca6a1 22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 101 (344)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc
Confidence 44445566777888888887664 3444556677888888876633221 1223455667777776
Q ss_pred CcccCCCCCCccCCCCCCcEeceecCCCcchhhhCCCCCCCeEEEeeecccchh----ch---------hhhcCCCCCCC
Q 035853 356 SITLPAHPGKCCSSLENLNFISVLHPSSCTQDILGRLPSLQTFRVHENLSSYQS----ML---------SNNLCPLLHLE 422 (581)
Q Consensus 356 ~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~----~l---------~~~l~~~~~L~ 422 (581)
+|.+..... ..+...+...++|+.|++++|. ... .+ .......+.|+
T Consensus 102 ~n~i~~~~~------------------~~l~~~l~~~~~L~~L~l~~n~--l~~~~~~~l~~~l~~~~~~~~~~~~~~L~ 161 (344)
T d2ca6a1 102 DNAFGPTAQ------------------EPLIDFLSKHTPLEHLYLHNNG--LGPQAGAKIARALQELAVNKKAKNAPPLR 161 (344)
T ss_dssp SCCCCTTTH------------------HHHHHHHHHCTTCCEEECCSSC--CHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred ccccccccc------------------cchhhhhcccccchheeccccc--ccccccccccccccccccccccccCcccc
Confidence 665532111 1123334455667777776664 111 01 11123567889
Q ss_pred EEEeecCCcccCCcccc-cCC-CCCCCCCccEEEEeeccCCCC-----CcccccCCCCCCeEEEecCcccCce---eeeC
Q 035853 423 SLKLVDERTIALQPSSI-VLP-EYQFPPRLIELSLSNTELKYD-----PMPALEKLPHLRVLKLKKNSFFGRK---LVCS 492 (581)
Q Consensus 423 ~L~l~~~~~i~L~~l~l-~lp-~~~~l~~L~~L~L~~~~l~~~-----~~~~l~~l~~L~~L~L~~~~~~~~~---~~~~ 492 (581)
.+.++.+. +....+ .+. .+..+++|+.|++++|.+... ....+..+++|+.|++++|.+.... +...
T Consensus 162 ~l~l~~n~---i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~ 238 (344)
T d2ca6a1 162 SIICGRNR---LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA 238 (344)
T ss_dssp EEECCSSC---CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred eeeccccc---ccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccccc
Confidence 99988733 000001 233 355678999999999987542 2234678999999999988765432 2223
Q ss_pred CCCCCCCcEEEecCCCcccc-----cccCc--ccccccceEeeccCcCCC----CCccccc-CCCCccEEEeeCCC
Q 035853 493 SGGFPSLKVMHLKSMFWLEE-----WTMEN--DAMPKLESLIINPCAYLK----ILPEELW-RIKSLTKLELWWPR 556 (581)
Q Consensus 493 ~~~~~~L~~L~l~~~~~l~~-----l~~~~--~~l~~L~~L~l~~c~~l~----~lp~~l~-~l~~L~~L~l~~c~ 556 (581)
+..+++|++|++++|. +.. +...+ ...++|++|++++|..-. .+...+. ++++|+.|++++|.
T Consensus 239 l~~~~~L~~L~Ls~n~-i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~ 313 (344)
T d2ca6a1 239 LKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 313 (344)
T ss_dssp GGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred ccccccchhhhhhcCc-cCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence 5678999999999984 442 21112 235789999999997322 2444453 67899999999886
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.00 E-value=4.2e-10 Score=100.84 Aligned_cols=105 Identities=14% Similarity=0.108 Sum_probs=68.0
Q ss_pred CceeEEEecCccccc-C-CCcccCcCCCcEEeccCCCCcccC-hhhhcccCCcEEEecCCcccccchh-hhcCCCCcEee
Q 035853 278 KFLRLLDLGTIVLDE-Y-PAGINPLLLLKYLVLNIPSLKHLP-SSLCNLLSLHTLDMRWSYIHHTPDE-IWKMNELRHLN 353 (581)
Q Consensus 278 ~~Lr~L~L~~~~l~~-l-p~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~ 353 (581)
+++++|+|++|.++. + +..+..+++|+.|++++|.+..++ ..+..+++|++|++++|.+..+|.. +..+++|++|+
T Consensus 29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~ 108 (192)
T d1w8aa_ 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence 456777777777652 3 244566777777777777766433 4566677777777777777666543 46677777777
Q ss_pred cCCcccCCCCCCccCCCCCCcEeceecCC
Q 035853 354 FGSITLPAHPGKCCSSLENLNFISVLHPS 382 (581)
Q Consensus 354 l~~~~~~~~~p~~i~~l~~L~~L~l~~~~ 382 (581)
+++|.+....|..+..+++|++|++.++.
T Consensus 109 L~~N~l~~i~~~~f~~l~~L~~l~L~~N~ 137 (192)
T d1w8aa_ 109 LYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred cCCccccccCHHHhcCCcccccccccccc
Confidence 77777664444556667777777766654
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.76 E-value=1.3e-08 Score=87.30 Aligned_cols=103 Identities=16% Similarity=-0.039 Sum_probs=73.2
Q ss_pred ceeEEEecCcccccCCCcccCcCCCcEEeccCC-CCcccCh-hhhcccCCcEEEecCCcccccch-hhhcCCCCcEeecC
Q 035853 279 FLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIP-SLKHLPS-SLCNLLSLHTLDMRWSYIHHTPD-EIWKMNELRHLNFG 355 (581)
Q Consensus 279 ~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~-~i~~lp~-~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~ 355 (581)
...+++.++..+.+.|..+..+++|++|++.++ .++.++. .+.++++|+.|++++|.+..++. .+..+++|++|+++
T Consensus 9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls 88 (156)
T d2ifga3 9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (156)
T ss_dssp SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence 345577777777777777878888888888665 4777763 57778888888888888877754 46778888888888
Q ss_pred CcccCCCCCCccCCCCCCcEeceecCC
Q 035853 356 SITLPAHPGKCCSSLENLNFISVLHPS 382 (581)
Q Consensus 356 ~~~~~~~~p~~i~~l~~L~~L~l~~~~ 382 (581)
+|.+. .+|..+....+|+.|++.++.
T Consensus 89 ~N~l~-~l~~~~~~~~~l~~L~L~~Np 114 (156)
T d2ifga3 89 FNALE-SLSWKTVQGLSLQELVLSGNP 114 (156)
T ss_dssp SSCCS-CCCSTTTCSCCCCEEECCSSC
T ss_pred CCCCc-ccChhhhccccccccccCCCc
Confidence 88876 555554444456666666554
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=2.2e-08 Score=85.81 Aligned_cols=89 Identities=13% Similarity=0.066 Sum_probs=72.9
Q ss_pred HHHhccCCceeEEEecCcc-cccCC-CcccCcCCCcEEeccCCCCcccC-hhhhcccCCcEEEecCCcccccchhhhcCC
Q 035853 271 NAICKWFKFLRLLDLGTIV-LDEYP-AGINPLLLLKYLVLNIPSLKHLP-SSLCNLLSLHTLDMRWSYIHHTPDEIWKMN 347 (581)
Q Consensus 271 ~~~~~~~~~Lr~L~L~~~~-l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~ 347 (581)
+..+..+++|+.|++.+++ ++.++ ..|..+++|+.|++++|+|+.++ ..+..+++|++|+|++|.+..+|.++....
T Consensus 24 p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~ 103 (156)
T d2ifga3 24 LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL 103 (156)
T ss_dssp TTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC
T ss_pred cccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccc
Confidence 3556778888999997765 77665 45888999999999999998775 558889999999999999999988877777
Q ss_pred CCcEeecCCccc
Q 035853 348 ELRHLNFGSITL 359 (581)
Q Consensus 348 ~L~~L~l~~~~~ 359 (581)
+|++|++++|.+
T Consensus 104 ~l~~L~L~~Np~ 115 (156)
T d2ifga3 104 SLQELVLSGNPL 115 (156)
T ss_dssp CCCEEECCSSCC
T ss_pred cccccccCCCcc
Confidence 899999988876
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.85 E-value=3.7e-07 Score=78.55 Aligned_cols=42 Identities=24% Similarity=0.054 Sum_probs=17.5
Q ss_pred ccCCceeEEEecCcccccCC---CcccCcCCCcEEeccCCCCccc
Q 035853 275 KWFKFLRLLDLGTIVLDEYP---AGINPLLLLKYLVLNIPSLKHL 316 (581)
Q Consensus 275 ~~~~~Lr~L~L~~~~l~~lp---~~i~~l~~Lr~L~L~~~~i~~l 316 (581)
..+++|++|+|++|+++.++ ..+..+++|++|++++|.|+.+
T Consensus 62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l 106 (162)
T d1koha1 62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE 106 (162)
T ss_dssp HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCG
T ss_pred HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccc
Confidence 34444444444444444221 2233344444444444444433
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.70 E-value=4.6e-06 Score=71.40 Aligned_cols=84 Identities=15% Similarity=0.042 Sum_probs=66.3
Q ss_pred ccCcCCCcEEeccCCCCcccC---hhhhcccCCcEEEecCCcccccch-hhhcCCCCcEeecCCcccCCCCCCc------
Q 035853 297 INPLLLLKYLVLNIPSLKHLP---SSLCNLLSLHTLDMRWSYIHHTPD-EIWKMNELRHLNFGSITLPAHPGKC------ 366 (581)
Q Consensus 297 i~~l~~Lr~L~L~~~~i~~lp---~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~------ 366 (581)
...+++|++|++++|+|+.++ ..+..+++|+.|++++|.+..++. ...+..+|+.|++++|.+.......
T Consensus 61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~ 140 (162)
T d1koha1 61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA 140 (162)
T ss_dssp HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence 356889999999999998654 457789999999999999988876 2234567999999999887544322
Q ss_pred -cCCCCCCcEeceec
Q 035853 367 -CSSLENLNFISVLH 380 (581)
Q Consensus 367 -i~~l~~L~~L~l~~ 380 (581)
+..+++|+.|+...
T Consensus 141 i~~~~P~L~~LDg~~ 155 (162)
T d1koha1 141 IRERFPKLLRLDGHE 155 (162)
T ss_dssp HHTTSTTCCEETTEE
T ss_pred HHHHCCCCCEECcCC
Confidence 56789999998543
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.33 E-value=8e-05 Score=63.70 Aligned_cols=62 Identities=8% Similarity=0.032 Sum_probs=28.2
Q ss_pred ccCcCCCcEEeccCCCCc-----ccChhhhcccCCcEEEecCCcccc-----cchhhhcCCCCcEeecCCcc
Q 035853 297 INPLLLLKYLVLNIPSLK-----HLPSSLCNLLSLHTLDMRWSYIHH-----TPDEIWKMNELRHLNFGSIT 358 (581)
Q Consensus 297 i~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~ 358 (581)
+...++|++|++++|.+. .+...+...+.|++|++++|.+.. +-..+...+.|++|++++|.
T Consensus 40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~ 111 (167)
T d1pgva_ 40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR 111 (167)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCc
Confidence 334445555555555443 222333444555555555554322 22233444455555555443
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.16 E-value=7.8e-05 Score=63.77 Aligned_cols=85 Identities=13% Similarity=-0.025 Sum_probs=43.0
Q ss_pred HHhccCCceeEEEecCcccc-----cCCCcccCcCCCcEEeccCCCCc-----ccChhhhcccCCcEEEecCCcccc---
Q 035853 272 AICKWFKFLRLLDLGTIVLD-----EYPAGINPLLLLKYLVLNIPSLK-----HLPSSLCNLLSLHTLDMRWSYIHH--- 338 (581)
Q Consensus 272 ~~~~~~~~Lr~L~L~~~~l~-----~lp~~i~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~l~~--- 338 (581)
..+...+.|+.|+|++|.+. .+...+...+.|++|++++|.+. .+-..+...+.|++|+++++.+..
T Consensus 38 ~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~ 117 (167)
T d1pgva_ 38 EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGN 117 (167)
T ss_dssp HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCH
T ss_pred HHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccH
Confidence 34555566666666666654 11123334456666666666554 223344455556666666553222
Q ss_pred -----cchhhhcCCCCcEeecCC
Q 035853 339 -----TPDEIWKMNELRHLNFGS 356 (581)
Q Consensus 339 -----lp~~i~~l~~L~~L~l~~ 356 (581)
+...+...+.|+.|+++.
T Consensus 118 ~~~~~l~~~L~~n~sL~~l~l~~ 140 (167)
T d1pgva_ 118 QVEMDMMMAIEENESLLRVGISF 140 (167)
T ss_dssp HHHHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHHHHHHHHhCCCccEeeCcC
Confidence 223334455555555543
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.81 E-value=0.00045 Score=58.73 Aligned_cols=83 Identities=14% Similarity=0.091 Sum_probs=37.6
Q ss_pred HHhccCCceeEEEecCc-ccc-----cCCCcccCcCCCcEEeccCCCCc-----ccChhhhcccCCcEEEecCCcc----
Q 035853 272 AICKWFKFLRLLDLGTI-VLD-----EYPAGINPLLLLKYLVLNIPSLK-----HLPSSLCNLLSLHTLDMRWSYI---- 336 (581)
Q Consensus 272 ~~~~~~~~Lr~L~L~~~-~l~-----~lp~~i~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~l---- 336 (581)
....+.+.|+.|+++++ .++ .+-..+...++|+.|++++|.+. .+...+...+.++.+++++|.+
T Consensus 11 ~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g 90 (166)
T d1io0a_ 11 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 90 (166)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchh
Confidence 33344455555555542 232 12233334455555555555543 2223344455555555555533
Q ss_pred -cccchhhhcCCCCcEeec
Q 035853 337 -HHTPDEIWKMNELRHLNF 354 (581)
Q Consensus 337 -~~lp~~i~~l~~L~~L~l 354 (581)
..+...+...++|+.+++
T Consensus 91 ~~~l~~~l~~~~~L~~l~L 109 (166)
T d1io0a_ 91 ILALVEALQSNTSLIELRI 109 (166)
T ss_dssp HHHHHHGGGGCSSCCEEEC
T ss_pred HHHHHHHHHhCccccEEee
Confidence 122233444555554443
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.58 E-value=0.00043 Score=58.83 Aligned_cols=85 Identities=13% Similarity=0.043 Sum_probs=40.6
Q ss_pred HHhccCCceeEEEecCcccc-----cCCCcccCcCCCcEEeccCCCCc-----ccChhhhcccCCcEEEecCC--ccc--
Q 035853 272 AICKWFKFLRLLDLGTIVLD-----EYPAGINPLLLLKYLVLNIPSLK-----HLPSSLCNLLSLHTLDMRWS--YIH-- 337 (581)
Q Consensus 272 ~~~~~~~~Lr~L~L~~~~l~-----~lp~~i~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~--~l~-- 337 (581)
..+...++|+.|++++|.+. .+-..+...+.+++++++++.+. .+...+...++|+.++|..+ .++
T Consensus 40 ~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~ 119 (166)
T d1io0a_ 40 EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNN 119 (166)
T ss_dssp HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred HHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHH
Confidence 44445555666666665543 12223334455666666555543 23344445555555444332 231
Q ss_pred ---ccchhhhcCCCCcEeecCC
Q 035853 338 ---HTPDEIWKMNELRHLNFGS 356 (581)
Q Consensus 338 ---~lp~~i~~l~~L~~L~l~~ 356 (581)
.+...+.+.++|++|+++.
T Consensus 120 ~~~~La~~L~~n~~L~~L~l~~ 141 (166)
T d1io0a_ 120 VEMEIANMLEKNTTLLKFGYHF 141 (166)
T ss_dssp HHHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHHHHHHHhCCCcCEEeCcC
Confidence 2333344555555555543
|