Citrus Sinensis ID: 035879

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350------
MAKFRGSLSVPCVQELAKNPTLVVPPRYIRPDQDATTIISDDALVSKLPVIDMQSLLSEESMDSELAKLDSACKEWGFFQMVNHGVSSAFLEKVKKEVHEFFNLSMEEKKKYWQSPEDLEGFGQAFVVSEEQKLDWGDLFFMTTLPVHLRKPHLFPKLPLPLRDTLEVYSMELKSLAMNLILKMGKVLNIKDEEMKNFFENGLQVMRMNYYPPCPQPEKVVGLTPHSDGPALTILLQINEVEGLQIKKDGVWIPVTPLPNAFIVNIGDIMEIITNGKYRSIEHRVTVNSVQERLSVGTFYYTRYDGEVYPASSLISEKAPALFRRLTVEEYLSGRFARELRGKSYLDVLRIQHGQG
cccccccccccHHHHHHHcccccccccccccccccccccccccccccccEEEcccccccccHHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHccccHHHHHHHcccccccEEEccccccccccccccEEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccEEEEEEccccccccccccccccccccccEEEEEEccccccEEEEEccEEEEcccccccEEEEEccEEEEEEcccccccccEEEccccccEEEEEEEEccccccEEEccccccccccccccccccHHHHHHHHHcccccccccccccccccccc
ccccccccccHHHHHHHHcccccccHHcEccccccccccccccccccccEEEHHHccccccHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHHccccccEEEEEEEEEEccccccHHHHEEEEcccHHcccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcEEEEEEEEEcccccccccccEEEEcccccEEEEEEccccccEEEEEccEEEEcccccccEEEEEcHHHHHHcccccccccEEEcccccccEEEEEEEEccccccEEcccHHHcccccccccccccHHHHHHHHHHcccccccHHHHHHHHcccc
makfrgslsvpcvqelaknptlvvppryirpdqdattiisddalvsklpvidmqsllseeSMDSELAKLDSACKEWGFFQMVNHGVSSAFLEKVKKEVHEFFNLSMEEKKkywqspedlegFGQAFVVseeqkldwgdlffmttlpvhlrkphlfpklplplrdtLEVYSMELKSLAMNLILKMGKVLNIKDEEMKNFFENGLQVMrmnyyppcpqpekvvgltphsdgpaLTILLQINEveglqikkdgvwipvtplpnafivNIGDIMEIITNGKYRSIEHRVTVNSVQERLSVGTFyytrydgevypasslisekaPALFRRLTVEEYLSGRFARELRGKSYLDVLRIQHGQG
makfrgslsvpcvqelaknptlvvppryirpdQDATtiisddalvskLPVIDMQSLLSEESMDSELAKLDSACKEWGFFQMVNHGVSSAFLEKVKKEVHEFFNLSMEEKKKYWQSPEDLEGFGQAFVVSEEQKLDWGDLFFMTTLPVHLRKPHLFPKLPLPLRDTLEVYSMELKSLAMNLILKMGKVLNIKDEEMKNFFENGLQVMRMNYYPPCPQPEKVVGLTPHSDGPALTILLQINEVEGLQIKKDGVWIPVTPLPNAFIVNIGDIMEIITNGKYRSIEHRvtvnsvqerlsVGTFYYTRYDGEVYPASSLISEKAPALFRRLTVEEYLSgrfarelrgksyldvlriqhgqg
MAKFRGSLSVPCVQELAKNPTLVVPPRYIRPDQDATTIISDDALVSKLPVIDMQsllseesmdselAKLDSACKEWGFFQMVNHGVSSAFLEKVKKEVHEFFNLSMEEKKKYWQSPEDLEGFGQAFVVSEEQKLDWGDLFFMTTLPVhlrkphlfpklplplrDTLEVYSMELKSLAMNLILKMGKVLNIKDEEMKNFFENGLQVMRMNYYPPCPQPEKVVGLTPHSDGPALTILLQINEVEGLQIKKDGVWIPVTPLPNAFIVNIGDIMEIITNGKYRSIEHRVTVNSVQERLSVGTFYYTRYDGEVYPASSLISEKAPALFRRLTVEEYLSGRFARELRGKSYLDVLRIQHGQG
*********VPCVQELAKNPTLVVPPRYIRPDQDATTIISDDALVSKLPVIDMQ************AKLDSACKEWGFFQMVNHGVSSAFLEKVKKEVHEFFNLSMEEKKKYWQSPEDLEGFGQAFVVSEEQKLDWGDLFFMTTLPVHLRKPHLFPKLPLPLRDTLEVYSMELKSLAMNLILKMGKVLNIKDEEMKNFFENGLQVMRMNYYPPCPQPEKVVGLTPHSDGPALTILLQINEVEGLQIKKDGVWIPVTPLPNAFIVNIGDIMEIITNGKYRSIEHRVTVNSVQERLSVGTFYYTRYDGEVYPASSLISEKAPALFRRLTVEEYLSGRFARELRGKSYLDVLRI*****
******S*SVPCVQELAKNPTLVVPPRYIRPD*************SKLPVIDMQSLLSEESMDSELAKLDSACKEWGFFQMVNHGVSSAFLEKVKKEVHEFFNLSMEEKKKYWQSPEDLEGFGQAFVVSEEQKLDWGDLFFMTTLPVHLRKPHLFPKLPLPLRDTLEVYSMELKSLAMNLILKMGKVLNIKDEEMKNFFENGLQVMRMNYYPPCPQPEKVVGLTPHSDGPALTILLQINEVEGLQIKKDGVWIPVTPLPNAFIVNIGDIMEIITNGKYRSIEHRVTVNSVQERLSVGTFYYTRYDGEVYPASSLISEKAPALFRRLTVEEYLSGRFARELRGKSYLD**RIQ****
MAKFRGSLSVPCVQELAKNPTLVVPPRYIRPDQDATTIISDDALVSKLPVIDMQSLLSEESMDSELAKLDSACKEWGFFQMVNHGVSSAFLEKVKKEVHEFFNLSMEEKKKYWQSPEDLEGFGQAFVVSEEQKLDWGDLFFMTTLPVHLRKPHLFPKLPLPLRDTLEVYSMELKSLAMNLILKMGKVLNIKDEEMKNFFENGLQVMRMNYYPPCPQPEKVVGLTPHSDGPALTILLQINEVEGLQIKKDGVWIPVTPLPNAFIVNIGDIMEIITNGKYRSIEHRVTVNSVQERLSVGTFYYTRYDGEVYPASSLISEKAPALFRRLTVEEYLSGRFARELRGKSYLDVLRIQHGQG
*******LSVPCVQELAKNPTLVVPPRYIRPDQDATTIISDDALVSKLPVIDMQSLLSEESMDSELAKLDSACKEWGFFQMVNHGVSSAFLEKVKKEVHEFFNLSMEEKKKYWQSPEDLEGFGQAFVVSEEQKLDWGDLFFMTTLPVHLRKPHLFPKLPLPLRDTLEVYSMELKSLAMNLILKMGKVLNIKDEEMKNFFENGLQVMRMNYYPPCPQPEKVVGLTPHSDGPALTILLQINEVEGLQIKKDGVWIPVTPLPNAFIVNIGDIMEIITNGKYRSIEHRVTVNSVQERLSVGTFYYTRYDGEVYPASSLISEKAPALFRRLTVEEYLSGRFARELRGKSYLDVLRIQH***
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MAKFRGSLSVPCVQELAKNPTLVVPPRYIRPDQDATTIISDDALVSKLPVIDMQSLLSEESMDSELAKLDSACKEWGFFQMVNHGVSSAFLEKVKKEVHEFFNLSMEEKKKYWQSPEDLEGFGQAFVVSEEQKLDWGDLFFMTTLPVHLRKPHLFPKLPLPLRDTLEVYSMELKSLAMNLILKMGKVLNIKDEEMKNFFENGLQVMRMNYYPPCPQPEKVVGLTPHSDGPALTILLQINEVEGLQIKKDGVWIPVTPLPNAFIVNIGDIMEIITNGKYRSIEHRVTVNSVQERLSVGTFYYTRYDGEVYPASSLISEKAPALFRRLTVEEYLSGRFARELRGKSYLDVLRIQHGQG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query356 2.2.26 [Sep-21-2011]
Q39224358 Protein SRG1 OS=Arabidops yes no 0.971 0.966 0.627 1e-130
D4N501364 Probable 2-oxoglutarate/F N/A no 0.977 0.956 0.541 1e-107
D4N502360 Codeine O-demethylase OS= N/A no 0.977 0.966 0.525 1e-103
D4N500364 Thebaine 6-O-demethylase N/A no 0.977 0.956 0.522 1e-103
A2A1A0352 S-norcoclaurine synthase N/A no 0.949 0.960 0.415 1e-73
Q9LSW7365 1-aminocyclopropane-1-car no no 0.842 0.821 0.337 6e-46
Q96323356 Leucoanthocyanidin dioxyg no no 0.924 0.924 0.318 6e-45
Q9M547334 Flavonol synthase/flavano N/A no 0.901 0.961 0.337 8e-45
Q9C899361 Feruloyl CoA ortho-hydrox no no 0.915 0.903 0.346 3e-44
P31237319 1-aminocyclopropane-1-car N/A no 0.778 0.868 0.340 3e-44
>sp|Q39224|SRG1_ARATH Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1 Back     alignment and function desciption
 Score =  464 bits (1195), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 219/349 (62%), Positives = 272/349 (77%), Gaps = 3/349 (0%)

Query: 6   GSLSVPCVQELAKNPTLV-VPPRYIRPDQDATTIISDDALVSKLPVIDMQSLLSEESMDS 64
            S+ VP VQE+ K  T+  VPPRY+R DQD T +  D  +  ++P+IDM+ L S  +MDS
Sbjct: 10  SSILVPSVQEMVKEKTITTVPPRYVRSDQDKTEVDDDFDVKIEIPIIDMKRLCSSTTMDS 69

Query: 65  ELAKLDSACKEWGFFQMVNHGVSSAFLEKVKKEVHEFFNLSMEEKKKYWQSPEDLEGFGQ 124
           E+ KLD ACKEWGFFQ+VNHG+ S+FL+KVK E+ +FFNL MEEKKK+WQ P+++EGFGQ
Sbjct: 70  EVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKFWQRPDEIEGFGQ 129

Query: 125 AFVVSEEQKLDWGDLFFMTTLPVHLRKPHLFPKLPLPLRDTLEVYSMELKSLAMNLILKM 184
           AFVVSE+QKLDW DLFF T  PV LRKPHLFPKLPLP RDTLE+YS E++S+A  LI KM
Sbjct: 130 AFVVSEDQKLDWADLFFHTVQPVELRKPHLFPKLPLPFRDTLEMYSSEVQSVAKILIAKM 189

Query: 185 GKVLNIKDEEMKNFFE--NGLQVMRMNYYPPCPQPEKVVGLTPHSDGPALTILLQINEVE 242
            + L IK EE++  F+  + +Q MRMNYYPPCPQP++V+GLTPHSD   LT+L+Q+N+VE
Sbjct: 190 ARALEIKPEELEKLFDDVDSVQSMRMNYYPPCPQPDQVIGLTPHSDSVGLTVLMQVNDVE 249

Query: 243 GLQIKKDGVWIPVTPLPNAFIVNIGDIMEIITNGKYRSIEHRVTVNSVQERLSVGTFYYT 302
           GLQIKKDG W+PV PLPNAFIVNIGD++EIITNG YRSIEHR  VNS +ERLS+ TF+  
Sbjct: 250 GLQIKKDGKWVPVKPLPNAFIVNIGDVLEIITNGTYRSIEHRGVVNSEKERLSIATFHNV 309

Query: 303 RYDGEVYPASSLISEKAPALFRRLTVEEYLSGRFARELRGKSYLDVLRI 351
               EV PA SL+  +  A F+RLT++EY  G F+R L GK+YLD LRI
Sbjct: 310 GMYKEVGPAKSLVERQKVARFKRLTMKEYNDGLFSRTLDGKAYLDALRI 358

Arabidopsis thaliana (taxid: 3702)
>sp|D4N501|DIOX2_PAPSO Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1 Back     alignment and function description
>sp|D4N502|DIOX3_PAPSO Codeine O-demethylase OS=Papaver somniferum GN=CODM PE=1 SV=1 Back     alignment and function description
>sp|D4N500|DIOX1_PAPSO Thebaine 6-O-demethylase OS=Papaver somniferum GN=T6ODM PE=1 SV=1 Back     alignment and function description
>sp|A2A1A0|NCS1_COPJA S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LSW7|ACCH9_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 9 OS=Arabidopsis thaliana GN=At5g43440 PE=2 SV=1 Back     alignment and function description
>sp|Q96323|LDOX_ARATH Leucoanthocyanidin dioxygenase OS=Arabidopsis thaliana GN=LDOX PE=1 SV=1 Back     alignment and function description
>sp|Q9M547|FLS_EUSER Flavonol synthase/flavanone 3-hydroxylase OS=Eustoma exaltatum subsp. russellianum GN=FLS PE=2 SV=1 Back     alignment and function description
>sp|Q9C899|F6H2_ARATH Feruloyl CoA ortho-hydroxylase 2 OS=Arabidopsis thaliana GN=F6'H2 PE=1 SV=1 Back     alignment and function description
>sp|P31237|ACCO_ACTDE 1-aminocyclopropane-1-carboxylate oxidase OS=Actinidia deliciosa GN=ACO PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query356
224061385355 predicted protein [Populus trichocarpa] 0.985 0.988 0.680 1e-143
255575141364 Leucoanthocyanidin dioxygenase, putative 0.969 0.947 0.675 1e-140
224061381359 predicted protein [Populus trichocarpa] 0.983 0.974 0.669 1e-139
225453297364 PREDICTED: protein SRG1 [Vitis vinifera] 0.960 0.939 0.643 1e-132
225462507366 PREDICTED: protein SRG1 [Vitis vinifera] 1.0 0.972 0.608 1e-130
224061027362 predicted protein [Populus trichocarpa] 0.991 0.975 0.627 1e-130
356556862353 PREDICTED: protein SRG1-like [Glycine ma 0.957 0.966 0.642 1e-129
363807040358 uncharacterized protein LOC100777264 [Gl 0.969 0.963 0.659 1e-128
15219988358 protein SRG1 [Arabidopsis thaliana] gi|7 0.971 0.966 0.627 1e-128
147776748395 hypothetical protein VITISV_032872 [Viti 0.960 0.865 0.592 1e-127
>gi|224061385|ref|XP_002300453.1| predicted protein [Populus trichocarpa] gi|222847711|gb|EEE85258.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 239/351 (68%), Positives = 283/351 (80%)

Query: 1   MAKFRGSLSVPCVQELAKNPTLVVPPRYIRPDQDATTIISDDALVSKLPVIDMQSLLSEE 60
           + +F  SL VPCVQELAK  T  +PPRYIRPDQD  TII   A V+++PV+DMQ LL +E
Sbjct: 5   VVQFGSSLIVPCVQELAKVNTAAIPPRYIRPDQDQPTIIPSCASVNEIPVVDMQRLLDQE 64

Query: 61  SMDSELAKLDSACKEWGFFQMVNHGVSSAFLEKVKKEVHEFFNLSMEEKKKYWQSPEDLE 120
           SMDSELAKL  AC++WGFFQ+VNH VS++ LEKVK +V +FFNL MEEKK +WQ P ++E
Sbjct: 65  SMDSELAKLHLACRDWGFFQLVNHEVSASLLEKVKTDVQDFFNLPMEEKKLFWQYPGEVE 124

Query: 121 GFGQAFVVSEEQKLDWGDLFFMTTLPVHLRKPHLFPKLPLPLRDTLEVYSMELKSLAMNL 180
           GFGQAFVVSEEQKLDWGDLFFM T PVH RKPHLFPKLPLP RDT+E +S+ELK+L + +
Sbjct: 125 GFGQAFVVSEEQKLDWGDLFFMVTQPVHARKPHLFPKLPLPFRDTVEAFSLELKNLGITI 184

Query: 181 ILKMGKVLNIKDEEMKNFFENGLQVMRMNYYPPCPQPEKVVGLTPHSDGPALTILLQINE 240
           + KM K L I+ EE++  F NG Q MRMNYYPPCPQP+KV+GLTPHSD   LTILLQ+NE
Sbjct: 185 LGKMAKALKIEAEEVEELFGNGFQSMRMNYYPPCPQPDKVIGLTPHSDAVGLTILLQVNE 244

Query: 241 VEGLQIKKDGVWIPVTPLPNAFIVNIGDIMEIITNGKYRSIEHRVTVNSVQERLSVGTFY 300
           VEGLQ+KKDG W+PV PLPNAFI N+GDI+EIITNG YRSIEHR TVNS +ERLS+ TF 
Sbjct: 245 VEGLQVKKDGKWVPVKPLPNAFIFNVGDILEIITNGTYRSIEHRATVNSEKERLSIATFL 304

Query: 301 YTRYDGEVYPASSLISEKAPALFRRLTVEEYLSGRFARELRGKSYLDVLRI 351
              YDG + PASSL++E+ PA+F+  T EEY  G FAREL  KSYLDV+RI
Sbjct: 305 SPNYDGVIGPASSLVTEQTPAMFKSTTTEEYFKGLFARELHEKSYLDVMRI 355

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255575141|ref|XP_002528475.1| Leucoanthocyanidin dioxygenase, putative [Ricinus communis] gi|223532084|gb|EEF33892.1| Leucoanthocyanidin dioxygenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224061381|ref|XP_002300451.1| predicted protein [Populus trichocarpa] gi|222847709|gb|EEE85256.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225453297|ref|XP_002268288.1| PREDICTED: protein SRG1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225462507|ref|XP_002269087.1| PREDICTED: protein SRG1 [Vitis vinifera] gi|297740615|emb|CBI30797.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224061027|ref|XP_002300322.1| predicted protein [Populus trichocarpa] gi|222847580|gb|EEE85127.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356556862|ref|XP_003546739.1| PREDICTED: protein SRG1-like [Glycine max] Back     alignment and taxonomy information
>gi|363807040|ref|NP_001242069.1| uncharacterized protein LOC100777264 [Glycine max] gi|255645137|gb|ACU23067.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|15219988|ref|NP_173145.1| protein SRG1 [Arabidopsis thaliana] gi|75220747|sp|Q39224.1|SRG1_ARATH RecName: Full=Protein SRG1; Short=AtSRG1; AltName: Full=Protein SENESCENCE-RELATED GENE 1 gi|5734767|gb|AAD50032.1|AC007651_27 SRG1 Protein [Arabidopsis thaliana] gi|479047|emb|CAA55654.1| SRG1 [Arabidopsis thaliana] gi|15081819|gb|AAK82564.1| F6I1.30/F6I1.30 [Arabidopsis thaliana] gi|22655018|gb|AAM98100.1| At1g17020/F6I1.30 [Arabidopsis thaliana] gi|332191410|gb|AEE29531.1| protein SRG1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|147776748|emb|CAN72414.1| hypothetical protein VITISV_032872 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query356
TAIR|locus:2020407358 SRG1 "senescence-related gene 0.969 0.963 0.571 3.6e-105
TAIR|locus:2020422361 AT1G17010 [Arabidopsis thalian 0.971 0.958 0.547 3.4e-100
TAIR|locus:2122669356 AT4G25300 [Arabidopsis thalian 0.974 0.974 0.550 1.2e-99
TAIR|locus:2122679353 AT4G25310 [Arabidopsis thalian 0.957 0.966 0.554 2.8e-98
TAIR|locus:2202980356 AT1G78550 [Arabidopsis thalian 0.969 0.969 0.511 4.8e-94
TAIR|locus:2089428364 LBO1 "LATERAL BRANCHING OXIDOR 0.952 0.931 0.393 7.2e-68
TAIR|locus:2042942353 AT2G38240 [Arabidopsis thalian 0.935 0.943 0.368 1.6e-56
TAIR|locus:2169697371 AT5G05600 [Arabidopsis thalian 0.941 0.902 0.351 2.5e-56
TAIR|locus:2082058363 JRG21 "jasmonate-regulated gen 0.949 0.931 0.337 1.5e-51
TAIR|locus:2010242348 AT1G49390 [Arabidopsis thalian 0.915 0.936 0.334 6.5e-51
TAIR|locus:2020407 SRG1 "senescence-related gene 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1041 (371.5 bits), Expect = 3.6e-105, P = 3.6e-105
 Identities = 199/348 (57%), Positives = 250/348 (71%)

Query:     7 SLSVPCVQELAKNPTLV-VPPRYIRPDQDATTIISDDALVSKLPVIDMQXXXXXXXXXXX 65
             S+ VP VQE+ K  T+  VPPRY+R DQD T +  D  +  ++P+IDM+           
Sbjct:    11 SILVPSVQEMVKEKTITTVPPRYVRSDQDKTEVDDDFDVKIEIPIIDMKRLCSSTTMDSE 70

Query:    66 XAKLDSACKEWGFFQMVNHGVSSAFLEKVKKEVHEFFNLSMEEKKKYWQSPEDLEGFGQA 125
               KLD ACKEWGFFQ+VNHG+ S+FL+KVK E+ +FFNL MEEKKK+WQ P+++EGFGQA
Sbjct:    71 VEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKFWQRPDEIEGFGQA 130

Query:   126 FVVSEEQKLDWGDLFFMTTLPVXXXXXXXXXXXXXXXXDTLEVYSMELKSLAMNLILKMG 185
             FVVSE+QKLDW DLFF T  PV                DTLE+YS E++S+A  LI KM 
Sbjct:   131 FVVSEDQKLDWADLFFHTVQPVELRKPHLFPKLPLPFRDTLEMYSSEVQSVAKILIAKMA 190

Query:   186 KVLNIKDEEMKNFFEN--GLQVMRMNYYPPCPQPEKVVGLTPHSDGPALTILLQINEVEG 243
             + L IK EE++  F++   +Q MRMNYYPPCPQP++V+GLTPHSD   LT+L+Q+N+VEG
Sbjct:   191 RALEIKPEELEKLFDDVDSVQSMRMNYYPPCPQPDQVIGLTPHSDSVGLTVLMQVNDVEG 250

Query:   244 LQIKKDGVWIPVTPLPNAFIVNIGDIMEIITNGKYRSIEHRVTVNSVQERLSVGTFYYTR 303
             LQIKKDG W+PV PLPNAFIVNIGD++EIITNG YRSIEHR  VNS +ERLS+ TF+   
Sbjct:   251 LQIKKDGKWVPVKPLPNAFIVNIGDVLEIITNGTYRSIEHRGVVNSEKERLSIATFHNVG 310

Query:   304 YDGEVYPASSLISEKAPALFRRLTVEEYLSGRFARELRGKSYLDVLRI 351
                EV PA SL+  +  A F+RLT++EY  G F+R L GK+YLD LRI
Sbjct:   311 MYKEVGPAKSLVERQKVARFKRLTMKEYNDGLFSRTLDGKAYLDALRI 358
GO:0005737 "cytoplasm" evidence=ISM
GO:0009813 "flavonoid biosynthetic process" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009737 "response to abscisic acid stimulus" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0009830 "cell wall modification involved in abscission" evidence=RCA
GO:0009845 "seed germination" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010260 "organ senescence" evidence=IEP;RCA
GO:0016682 "oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor" evidence=ISS
TAIR|locus:2020422 AT1G17010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122669 AT4G25300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122679 AT4G25310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202980 AT1G78550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089428 LBO1 "LATERAL BRANCHING OXIDOREDUCTASE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042942 AT2G38240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169697 AT5G05600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082058 JRG21 "jasmonate-regulated gene 21" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010242 AT1G49390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
D4N501DIOX2_PAPSO1, ., 1, 4, ., 1, 1, ., -0.54140.97750.9560N/Ano
D4N500DIOX1_PAPSO1, ., 1, 4, ., 1, 1, ., 3, 10.52200.97750.9560N/Ano
D4N502DIOX3_PAPSO1, ., 1, 4, ., 1, 1, ., 3, 20.52510.97750.9666N/Ano
Q39224SRG1_ARATHNo assigned EC number0.62750.97190.9664yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.110.963
4th Layer1.14.11.11LOW CONFIDENCE prediction!
4th Layer1.14.11.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query356
PLN02216357 PLN02216, PLN02216, protein SRG1 0.0
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 1e-112
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 1e-105
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 7e-77
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 2e-73
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 8e-72
PLN02947374 PLN02947, PLN02947, oxidoreductase 7e-70
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 4e-68
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 2e-63
PLN02704335 PLN02704, PLN02704, flavonol synthase 1e-59
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 2e-59
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 8e-57
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 5e-56
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 8e-51
PLN02904357 PLN02904, PLN02904, oxidoreductase 1e-50
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 2e-49
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 3e-49
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 3e-47
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 4e-39
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 2e-36
PLN02485329 PLN02485, PLN02485, oxidoreductase 3e-34
PLN02997325 PLN02997, PLN02997, flavonol synthase 5e-34
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 9e-34
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 1e-33
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 2e-33
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 9e-32
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 4e-22
PLN03176120 PLN03176, PLN03176, flavanone-3-hydroxylase; Provi 4e-08
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information 
 Score =  517 bits (1332), Expect = 0.0
 Identities = 223/352 (63%), Positives = 268/352 (76%), Gaps = 2/352 (0%)

Query: 2   AKFRGSLSVPCVQELAKNPTLV-VPPRYIRPDQDATTIISDDALVSKLPVIDMQSLLSEE 60
           A    S+ VP VQE+ K   +  VPPRY+R DQD T I  D  L S++P+IDM+ L S  
Sbjct: 6   ATQWSSIIVPSVQEMVKEKMITTVPPRYVRSDQDKTEIAVDSGLSSEIPIIDMKRLCSST 65

Query: 61  SMDSELAKLDSACKEWGFFQMVNHGVSSAFLEKVKKEVHEFFNLSMEEKKKYWQSPEDLE 120
           +MDSE+ KLD ACKEWGFFQ+VNHG+ S+FL+KVK E+ +FFNL MEEKKK WQ P ++E
Sbjct: 66  AMDSEVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKLWQRPGEIE 125

Query: 121 GFGQAFVVSEEQKLDWGDLFFMTTLPVHLRKPHLFPKLPLPLRDTLEVYSMELKSLAMNL 180
           GFGQAFVVSE+QKLDW D+FF+T  PV LRKPHLFPKLPLP RDTLE YS E+KS+A  L
Sbjct: 126 GFGQAFVVSEDQKLDWADMFFLTMQPVRLRKPHLFPKLPLPFRDTLETYSAEVKSIAKIL 185

Query: 181 ILKMGKVLNIKDEEMKNFFENGL-QVMRMNYYPPCPQPEKVVGLTPHSDGPALTILLQIN 239
             KM   L IK EEM+  F++ L Q +RMNYYPPCPQP++V+GLTPHSD   LTILLQ+N
Sbjct: 186 FAKMASALEIKPEEMEKLFDDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTILLQVN 245

Query: 240 EVEGLQIKKDGVWIPVTPLPNAFIVNIGDIMEIITNGKYRSIEHRVTVNSVQERLSVGTF 299
           EVEGLQIKKDG W+ V PLPNA +VN+GDI+EIITNG YRSIEHR  VNS +ERLSV TF
Sbjct: 246 EVEGLQIKKDGKWVSVKPLPNALVVNVGDILEIITNGTYRSIEHRGVVNSEKERLSVATF 305

Query: 300 YYTRYDGEVYPASSLISEKAPALFRRLTVEEYLSGRFARELRGKSYLDVLRI 351
           + T    E+ PA SL+  +  ALF+ LT +EY  G F+REL GK+YLD +RI
Sbjct: 306 HNTGMGKEIGPAKSLVERQKAALFKSLTTKEYFDGLFSRELDGKAYLDAMRI 357

Length = 357
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178720 PLN03176, PLN03176, flavanone-3-hydroxylase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 356
PLN02216357 protein SRG1 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02947374 oxidoreductase 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02904357 oxidoreductase 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02704335 flavonol synthase 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN02997325 flavonol synthase 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02485329 oxidoreductase 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.92
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.89
PLN03176120 flavanone-3-hydroxylase; Provisional 99.85
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 96.3
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 94.58
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 94.35
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 91.08
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 88.68
TIGR02466201 conserved hypothetical protein. This family consis 86.54
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 83.07
>PLN02216 protein SRG1 Back     alignment and domain information 
Probab=100.00  E-value=3.2e-85  Score=631.37  Aligned_cols=343  Identities=64%  Similarity=1.068  Sum_probs=307.4

Q ss_pred             CchhhHHhhhC-CCCCCCCCCCCCCCCCCccccCCCCCCCCCeeeCCCCCCCChhHHHHHHHHHHHHhcceEEEEcCCCC
Q 035879            9 SVPCVQELAKN-PTLVVPPRYIRPDQDATTIISDDALVSKLPVIDMQSLLSEESMDSELAKLDSACKEWGFFQMVNHGVS   87 (356)
Q Consensus         9 ~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~d~~~~~~~~l~~A~~~~Gff~l~nhGi~   87 (356)
                      ++++||.++.+ ++.+||++|++|+++++......+...+||+|||+.+.+++..++++++|++||++||||||+||||+
T Consensus        13 ~~~~~~~~~~~~~~~~~p~~~v~p~~~~~~~~~~~~~~~~iPvIDls~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~   92 (357)
T PLN02216         13 IVPSVQEMVKEKMITTVPPRYVRSDQDKTEIAVDSGLSSEIPIIDMKRLCSSTAMDSEVEKLDFACKEWGFFQLVNHGID   92 (357)
T ss_pred             cchhHHHHHhcCCCCCCCHhhCcCcccCCccccccCcCCCCCeEEChhccCCccHHHHHHHHHHHHHHCcEEEEECCCCC
Confidence            45779999887 89999999999998876421011122589999999987655433477999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHccCCHHHHhhhcCCCCCccccccCcccCccccCCcccccccccCCccCCCCCCCCCCCcchHHHHH
Q 035879           88 SAFLEKVKKEVHEFFNLSMEEKKKYWQSPEDLEGFGQAFVVSEEQKLDWGDLFFMTTLPVHLRKPHLFPKLPLPLRDTLE  167 (356)
Q Consensus        88 ~~l~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~wP~~~~~fr~~~~  167 (356)
                      .++++++++++++||+||.|+|+++...++..+||+........+..||+|.|++...|.....+|.||+.++.||+.++
T Consensus        93 ~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~~p~~fr~~~~  172 (357)
T PLN02216         93 SSFLDKVKSEIQDFFNLPMEEKKKLWQRPGEIEGFGQAFVVSEDQKLDWADMFFLTMQPVRLRKPHLFPKLPLPFRDTLE  172 (357)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHhhhcCCCCccccCccccccccccCCceeeeeeeccCcccccchhcccchHHHHHHHH
Confidence            99999999999999999999999997655567899765544445678999999887666556778999998899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChhhHHhhhcC-CceeEEeeecCCCCCCCCcccccCcccCCceEEEEecCCCCcccc
Q 035879          168 VYSMELKSLAMNLILKMGKVLNIKDEEMKNFFEN-GLQVMRMNYYPPCPQPEKVVGLTPHSDGPALTILLQINEVEGLQI  246 (356)
Q Consensus       168 ~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~-~~~~lr~~~Ypp~~~~~~~~g~~~HtD~g~lTlL~q~~~~~GLqV  246 (356)
                      +|+++|.+|+.+||++||++|||++++|.+.+.+ ..+.||++|||||++++..+|+++|||+|+||||+|+++++||||
T Consensus       173 ~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTlL~q~~~v~GLQV  252 (357)
T PLN02216        173 TYSAEVKSIAKILFAKMASALEIKPEEMEKLFDDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTILLQVNEVEGLQI  252 (357)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCchheeEEeecCCCCCcccccCccCcccCceEEEEEecCCCCceeE
Confidence            9999999999999999999999999999998876 357899999999999888999999999999999999657999999


Q ss_pred             ccCCceEeccCCCCeEEEEhhhHHHHHhCCeecccccccccCCCCCccceeeeeecCCCeeEecCCcccCCCCCCCCccc
Q 035879          247 KKDGVWIPVTPLPNAFIVNIGDIMEIITNGKYRSIEHRVTVNSVQERLSVGTFYYTRYDGEVYPASSLISEKAPALFRRL  326 (356)
Q Consensus       247 ~~~g~W~~V~p~~g~~vVniGd~Le~~TnG~~kst~HRVv~~~~~~R~Si~~F~~P~~d~~i~pl~~~~~~~~p~~y~~~  326 (356)
                      +++|+|++|+|+||++||||||+||+||||+||||+|||++++.++||||+||++|+.|++|+|+++|+++++|++|+++
T Consensus       253 ~~~g~Wi~V~p~pgalvVNiGD~L~~~TNG~~kS~~HRVv~~~~~~R~Si~~F~~P~~d~~i~p~~~lv~~~~p~~Y~~~  332 (357)
T PLN02216        253 KKDGKWVSVKPLPNALVVNVGDILEIITNGTYRSIEHRGVVNSEKERLSVATFHNTGMGKEIGPAKSLVERQKAALFKSL  332 (357)
T ss_pred             EECCEEEECCCCCCeEEEEcchhhHhhcCCeeeccCceeecCCCCCEEEEEEEecCCCCCeEeCcHHHcCCCCCCCCCCc
Confidence            99999999999999999999999999999999999999998888899999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhhhcCCCccchhhcc
Q 035879          327 TVEEYLSGRFARELRGKSYLDVLRI  351 (356)
Q Consensus       327 ~~~e~~~~~~~~~~~g~~~~~~~~~  351 (356)
                      +|+||+..++++.+.+++.++.+||
T Consensus       333 t~~ey~~~~~~~~~~~~~~~~~~~~  357 (357)
T PLN02216        333 TTKEYFDGLFSRELDGKAYLDAMRI  357 (357)
T ss_pred             CHHHHHHHHHhcccCCcchhhhhcC
Confidence            9999999999999999999999886

>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query356
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 8e-41
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 8e-41
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 3e-39
1w9y_A319 The Structure Of Acc Oxidase Length = 319 2e-36
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 2e-15
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 1e-07
2bjs_A325 Isopenicillin N Synthase C-Terminal Truncation Muta 2e-05
1ips_A331 Isopenicillin N Synthase From Aspergillus Nidulans 2e-05
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure 
Iteration: 1

 Score =  164 bits (415), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 105/348 (30%), Positives = 178/348 (51%), Gaps = 19/348 (5%)
Query: 8   LSVPCVQELAKNPTLVVPPRYIRPDQDATTIISDDALVS-------KLPVIDMQXXXXXX 60
           ++V  V+ LAK+  + +P  YIRP ++  +I  +D  +        ++P ID++      
Sbjct: 1   VAVERVESLAKSGIISIPKEYIRPKEELESI--NDVFLEEKKEDGPQVPTIDLKNIESDD 58
Query: 61  XXXXXXA--KLDSACKEWGFFQMVNHGVSSAFLEKVKKEVHEFFNLSMEEKKKYW--QSP 116
                    +L  A  +WG   ++NHG+ +  +E+VKK   EFF+LS+EEK+KY   Q+ 
Sbjct: 59  EKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQAT 118
Query: 117 EDLEGFGQAFVVSEEQKLDWGDLFFMTTLPVXXXXXXXXXXXXXXXXDTLEVYSMELKSL 176
             ++G+G     +   +L+W D FF    P                 +    Y+  L+ L
Sbjct: 119 GKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLL 178
Query: 177 AMNLILKMGKVLNIKDEEMKN---FFENGLQVMRMNYYPPCPQPEKVVGLTPHSDGPALT 233
           A  +   +   L ++ + ++      E  L  M++NYYP CPQPE  +G+  H+D  ALT
Sbjct: 179 ATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALT 238
Query: 234 ILLQINEVEGLQIKKDGVWIPVTPLPNAFIVNIGDIMEIITNGKYRSIEHRVTVNSVQER 293
            +L  N V GLQ+  +G W+    +P++ +++IGD +EI++NGKY+SI HR  VN  + R
Sbjct: 239 FILH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVR 297
Query: 294 LSVGTFYYTRYDGEVY-PASSLISEKAPALFRRLTVEEYLSGR-FARE 339
           +S   F     D  V  P   ++S ++PA F   T  +++  + F +E
Sbjct: 298 ISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFGKE 345
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant Length = 325 Back     alignment and structure
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Manganese Complex) Length = 331 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query356
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 1e-159
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 1e-145
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 6e-92
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 5e-79
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 1e-76
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 9e-69
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-10
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
 Score =  450 bits (1159), Expect = e-159
 Identities = 111/358 (31%), Positives = 192/358 (53%), Gaps = 18/358 (5%)

Query: 8   LSVPCVQELAKNPTLVVPPRYIRPDQDATTI-----ISDDALVSKLPVIDMQSLLSEESM 62
           ++V  V+ LAK+  + +P  YIRP ++  +I             ++P ID++++ S++  
Sbjct: 2   VAVERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEK 61

Query: 63  DSE--LAKLDSACKEWGFFQMVNHGVSSAFLEKVKKEVHEFFNLSMEEKKKYW--QSPED 118
             E  + +L  A  +WG   ++NHG+ +  +E+VKK   EFF+LS+EEK+KY   Q+   
Sbjct: 62  IRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGK 121

Query: 119 LEGFGQAFVVSEEQKLDWGDLFFMTTLPVHLRKPHLFPKLPLPLRDTLEVYSMELKSLAM 178
           ++G+G     +   +L+W D FF    P   R   ++PK P    +    Y+  L+ LA 
Sbjct: 122 IQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLAT 181

Query: 179 NLILKMGKVLNIKDEEMKNFF---ENGLQVMRMNYYPPCPQPEKVVGLTPHSDGPALTIL 235
            +   +   L ++ + ++      E  L  M++NYYP CPQPE  +G+  H+D  ALT +
Sbjct: 182 KVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFI 241

Query: 236 LQINEVEGLQIKKDGVWIPVTPLPNAFIVNIGDIMEIITNGKYRSIEHRVTVNSVQERLS 295
           L  N V GLQ+  +G W+    +P++ +++IGD +EI++NGKY+SI HR  VN  + R+S
Sbjct: 242 LH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRIS 300

Query: 296 VGTFYYTRYDGEVY-PASSLISEKAPALFRRLTVEEYLSGRFARELRGKSYLDVLRIQ 352
              F     D  V  P   ++S ++PA F   T  +++      +L GK   +++  +
Sbjct: 301 WAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHI----EHKLFGKEQEELVSEK 354
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query356
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 94.81
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 93.77
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 88.7
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 81.94
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
Probab=100.00  E-value=2.6e-83  Score=618.58  Aligned_cols=334  Identities=31%  Similarity=0.597  Sum_probs=300.2

Q ss_pred             CchhhHHhhhCCCCCCCCCCCCCCCCCCccccC---CC---CCCCCCeeeCCCCCCCChh--HHHHHHHHHHHHhcceEE
Q 035879            9 SVPCVQELAKNPTLVVPPRYIRPDQDATTIISD---DA---LVSKLPVIDMQSLLSEESM--DSELAKLDSACKEWGFFQ   80 (356)
Q Consensus         9 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~---~~---~~~~iPvIDls~l~~~d~~--~~~~~~l~~A~~~~Gff~   80 (356)
                      ++++||+|+++|+.+||++|++|+++++.. ..   ..   ...+||||||+.+.+++..  .+.+++|.+||++|||||
T Consensus         3 ~~~~v~~l~~~~~~~vP~~~~~p~~~~~~~-~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~   81 (356)
T 1gp6_A            3 AVERVESLAKSGIISIPKEYIRPKEELESI-NDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMH   81 (356)
T ss_dssp             CCCCHHHHHHTTCSSCCGGGSCCHHHHTTC-CCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEE
T ss_pred             CcccHHHHHhcCCCCCCHHhcCCchhcccc-cccccccccccCCCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEE
Confidence            567799999999999999999998766543 11   01   1247999999999765542  236699999999999999


Q ss_pred             EEcCCCCHHHHHHHHHHHHHHccCCHHHHhhhcCCC--CCccccccCcccCccccCCcccccccccCCccCCCCCCCCCC
Q 035879           81 MVNHGVSSAFLEKVKKEVHEFFNLSMEEKKKYWQSP--EDLEGFGQAFVVSEEQKLDWGDLFFMTTLPVHLRKPHLFPKL  158 (356)
Q Consensus        81 l~nhGi~~~l~~~~~~~~~~fF~lP~e~K~~~~~~~--~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~wP~~  158 (356)
                      |+||||+.++++++++.+++||+||.|+|+++....  ..++||+........+..||+|.|+++..|.....+|.||+.
T Consensus        82 v~nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~~~wP~~  161 (356)
T 1gp6_A           82 LINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKT  161 (356)
T ss_dssp             EESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCS
T ss_pred             EeCCCCCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeeeecCCccccccccCCCc
Confidence            999999999999999999999999999999998754  368999876655556788999999988766544678999999


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHhhhc---CCceeEEeeecCCCCCCCCcccccCcccCCceEEE
Q 035879          159 PLPLRDTLEVYSMELKSLAMNLILKMGKVLNIKDEEMKNFFE---NGLQVMRMNYYPPCPQPEKVVGLTPHSDGPALTIL  235 (356)
Q Consensus       159 ~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~---~~~~~lr~~~Ypp~~~~~~~~g~~~HtD~g~lTlL  235 (356)
                      +++||+.+++|+++|.+|+.+||++|+++||+++++|.+.+.   .+.+.||++|||||++++..+|+++|||+|+||||
T Consensus       162 ~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL  241 (356)
T 1gp6_A          162 PSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFI  241 (356)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEE
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcccCCccceeeeeecCCCCCcccccCcCCccCCCeEEEE
Confidence            999999999999999999999999999999999999999887   47789999999999988889999999999999999


Q ss_pred             EecCCCCccccccCCceEeccCCCCeEEEEhhhHHHHHhCCeecccccccccCCCCCccceeeeeecCCCe-eEecCCcc
Q 035879          236 LQINEVEGLQIKKDGVWIPVTPLPNAFIVNIGDIMEIITNGKYRSIEHRVTVNSVQERLSVGTFYYTRYDG-EVYPASSL  314 (356)
Q Consensus       236 ~q~~~~~GLqV~~~g~W~~V~p~~g~~vVniGd~Le~~TnG~~kst~HRVv~~~~~~R~Si~~F~~P~~d~-~i~pl~~~  314 (356)
                      +| ++++||||+++|+|++|+|.||++||||||+||+||||+||||.|||+++++.+|||++||++|+.|+ +|.|+++|
T Consensus       242 ~q-d~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~~i~pl~~~  320 (356)
T 1gp6_A          242 LH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEM  320 (356)
T ss_dssp             EE-CSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGG
T ss_pred             EE-cCCCCeEEecCCcEEECcCCCCeEEEEeccHHHHhcCCEeeccCceecCCCCCCEEEEEEeecCCCCCcEEeCChhh
Confidence            99 67999999999999999999999999999999999999999999999998888999999999999999 99999999


Q ss_pred             cCCCCCCCCcccCHHHHHHHHHhhhcCCCc
Q 035879          315 ISEKAPALFRRLTVEEYLSGRFARELRGKS  344 (356)
Q Consensus       315 ~~~~~p~~y~~~~~~e~~~~~~~~~~~g~~  344 (356)
                      +++++|++|+++|++||+..+++.+++|+.
T Consensus       321 ~~~~~p~~y~~~t~~eyl~~~~~~~~d~~~  350 (356)
T 1gp6_A          321 VSVESPAKFPPRTFAQHIEHKLFGKEQEEL  350 (356)
T ss_dssp             CCSSSCCSSCCEEHHHHHHHHHHHHHHHHC
T ss_pred             cCCCCCccCCCccHHHHHHHHHHhccCcch
Confidence            999899999999999999999999887765
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 356
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 1e-74
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 5e-67
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 8e-57
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 6e-45
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  232 bits (593), Expect = 1e-74
 Identities = 110/354 (31%), Positives = 189/354 (53%), Gaps = 18/354 (5%)

Query: 8   LSVPCVQELAKNPTLVVPPRYIRPDQDATTIISDDALVS-----KLPVIDMQSLLSEESM 62
           ++V  V+ LAK+  + +P  YIRP ++  +I             ++P ID++++ S++  
Sbjct: 1   VAVERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEK 60

Query: 63  DSE--LAKLDSACKEWGFFQMVNHGVSSAFLEKVKKEVHEFFNLSMEEKKKYW--QSPED 118
             E  + +L  A  +WG   ++NHG+ +  +E+VKK   EFF+LS+EEK+KY   Q+   
Sbjct: 61  IRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGK 120

Query: 119 LEGFGQAFVVSEEQKLDWGDLFFMTTLPVHLRKPHLFPKLPLPLRDTLEVYSMELKSLAM 178
           ++G+G     +   +L+W D FF    P   R   ++PK P    +    Y+  L+ LA 
Sbjct: 121 IQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLAT 180

Query: 179 NLILKMGKVLNIKDEEMKNFF---ENGLQVMRMNYYPPCPQPEKVVGLTPHSDGPALTIL 235
            +   +   L ++ + ++      E  L  M++NYYP CPQPE  +G+  H+D  ALT  
Sbjct: 181 KVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALT-F 239

Query: 236 LQINEVEGLQIKKDGVWIPVTPLPNAFIVNIGDIMEIITNGKYRSIEHRVTVNSVQERLS 295
           +  N V GLQ+  +G W+    +P++ +++IGD +EI++NGKY+SI HR  VN  + R+S
Sbjct: 240 ILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRIS 299

Query: 296 VGTFYYTRYDGEVY-PASSLISEKAPALFRRLTVEEYLSGRFARELRGKSYLDV 348
              F     D  V  P   ++S ++PA F   T  +++  +    L GK   ++
Sbjct: 300 WAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHK----LFGKEQEEL 349
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query356
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 89.96
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.5e-79  Score=587.88  Aligned_cols=329  Identities=32%  Similarity=0.593  Sum_probs=287.2

Q ss_pred             CchhhHHhhhCCCCCCCCCCCCCCCCCCccc-----cCCCCCCCCCeeeCCCCCCCChhH--HHHHHHHHHHHhcceEEE
Q 035879            9 SVPCVQELAKNPTLVVPPRYIRPDQDATTII-----SDDALVSKLPVIDMQSLLSEESMD--SELAKLDSACKEWGFFQM   81 (356)
Q Consensus         9 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-----~~~~~~~~iPvIDls~l~~~d~~~--~~~~~l~~A~~~~Gff~l   81 (356)
                      .+.+||.|+++|+.+||++|+||+.+++...     .......+||||||+.+.+++...  +.+++|++||+++|||||
T Consensus         2 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l   81 (349)
T d1gp6a_           2 AVERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHL   81 (349)
T ss_dssp             CCCCHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred             CCcchHHHHhCCCccCCHhhcCChhhcCCCCccccccccCCCCCcCeEEChhcCCCCHHHHHHHHHHHHHHHHhCCEEEE
Confidence            5789999999999999999999988766531     012245689999999998776642  356999999999999999


Q ss_pred             EcCCCCHHHHHHHHHHHHHHccCCHHHHhhhcCCC--CCccccccCcccCccccCCcccccccccCCccCCCCCCCCCCC
Q 035879           82 VNHGVSSAFLEKVKKEVHEFFNLSMEEKKKYWQSP--EDLEGFGQAFVVSEEQKLDWGDLFFMTTLPVHLRKPHLFPKLP  159 (356)
Q Consensus        82 ~nhGi~~~l~~~~~~~~~~fF~lP~e~K~~~~~~~--~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~wP~~~  159 (356)
                      +||||+.++++++++++++||+||.|+|+++....  +.+.||+...........+|.+.+.....+.....+|.||..+
T Consensus        82 ~nHGI~~~li~~~~~~~~~FF~lP~eeK~k~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~wp~~~  161 (349)
T d1gp6a_          82 INHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTP  161 (349)
T ss_dssp             ESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSS
T ss_pred             EccCCCHHHHHHHHHHHHHHHcCCHHHHhhhhcccccCCccccccccccccccccchhhhhccccccccccccccccccc
Confidence            99999999999999999999999999999997643  3455565544444455566766554444444556789999999


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHhhhc---CCceeEEeeecCCCCCCCCcccccCcccCCceEEEE
Q 035879          160 LPLRDTLEVYSMELKSLAMNLILKMGKVLNIKDEEMKNFFE---NGLQVMRMNYYPPCPQPEKVVGLTPHSDGPALTILL  236 (356)
Q Consensus       160 ~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~---~~~~~lr~~~Ypp~~~~~~~~g~~~HtD~g~lTlL~  236 (356)
                      +.|++.+++|+++|.+++.+|+++++++||+++++|.+.+.   ...+.||++||||++.+...+|+++|||+|+||||+
T Consensus       162 ~~f~e~~~~~~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~g~lTlL~  241 (349)
T d1gp6a_         162 SDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFIL  241 (349)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEEE
T ss_pred             chHHHHHHHHHHHHHHHHHhhhHHHHHHcCCCHHHHHHHhccccccceeeeecccccccchhhccccccCCCCcceEEEe
Confidence            99999999999999999999999999999999999987764   356799999999999888899999999999999999


Q ss_pred             ecCCCCccccccCCceEeccCCCCeEEEEhhhHHHHHhCCeecccccccccCCCCCccceeeeeecCCCeeE-ecCCccc
Q 035879          237 QINEVEGLQIKKDGVWIPVTPLPNAFIVNIGDIMEIITNGKYRSIEHRVTVNSVQERLSVGTFYYTRYDGEV-YPASSLI  315 (356)
Q Consensus       237 q~~~~~GLqV~~~g~W~~V~p~~g~~vVniGd~Le~~TnG~~kst~HRVv~~~~~~R~Si~~F~~P~~d~~i-~pl~~~~  315 (356)
                      | +.++||||+++|+|++|+|.+|++|||+||+||+||||+||||+|||+.+++++||||+||++|+.|++| +|+|+|+
T Consensus       242 q-~~~~GLqv~~~g~W~~V~p~~~a~vVNvGD~l~~~TnG~~~St~HRVv~~~~~~R~Si~~F~~p~~d~~i~~pl~~~v  320 (349)
T d1gp6a_         242 H-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMV  320 (349)
T ss_dssp             E-CSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGGC
T ss_pred             c-cCCcceeeecCCceEEccCCCCCeeeeHHhHHHHHhCCCccCcCccccCCCCCCeEEEEEEecCCCcceeecCCHHHc
Confidence            9 6899999999999999999999999999999999999999999999999988999999999999999865 9999999


Q ss_pred             CCCCCCCCcccCHHHHHHHHHhh
Q 035879          316 SEKAPALFRRLTVEEYLSGRFAR  338 (356)
Q Consensus       316 ~~~~p~~y~~~~~~e~~~~~~~~  338 (356)
                      ++++|++|+|||++||++.|+..
T Consensus       321 ~~~~p~~y~~~t~~e~~~~rl~~  343 (349)
T d1gp6a_         321 SVESPAKFPPRTFAQHIEHKLFG  343 (349)
T ss_dssp             CSSSCCSSCCEEHHHHHHHHHHH
T ss_pred             CCCCCCCCCCccHHHHHHHHHhc
Confidence            99999999999999999998744
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure