Citrus Sinensis ID: 035891

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
Protein Sequence
LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALPFPHLKELEVNLCPKLEKLPFDCTSGQERKLIIKGQEKWWNNLQWEDQATQNAFLHCFKTRDFLLNLYHWLESS
Secondary Structure (PSIPRED)
ccccccccEEEcccccccEEcccccccccccccEEEEEccccccccccccccccccccHHHHcccccccccEEEEcccccccccccccccccccccccEEEEEccccccccccccccccccccEEEEEccccccccEEcccccEEEcccccccccccEEEEEEcccccccccccccccccEEEEcccccccccccccccccccccccccccccccccEEcccccccccEEcccccccccccEEEEEccccccccccccccccccEEEEEccHHHHHcccccccccccccccccccccccccHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHEEEEEccccccHccccHHHHHcHHHcEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHcEEEEccHHHHHHHHccHHHHHHHHHHHHHHHHHccccccEEEcccHHHccccEEEEEcccccEEEEEEccccccccccccccccccEEEEEEcccccccEEEEEcccccEEEEcccHHHHHHHcccccccccccccccccccHHcEEEEHcccHHHHHHHccccccccccEEEEEccccccccccccccccccEEEEEccHHHHHHcccccHHHHHHccccccHHHHHHHHccccccc
Coil and Loop (DISEMBL)
lkylvnlkclnleYTYRIYKIPGQVISNLKMLEALRMFkcgsskqesdsilfGGSLVLVEELLGLERLNVLTITLQSFAALHRLltspslqsifsntpslclrnchslsslsvFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVTWLIlapnlkhieVYNCRYLDEIIsleklgevpseemqnlfpfarleSLSLYALGNlrsiypkalpfphlkelevnlcpkleklpfdctsgqeRKLIIKGQEKWWNNLQWEDQATQNAFLHCFKTRDFLLNLYHWLESS
Flexible Loop (DISEMBL)
LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALPFPHLKELEVNLCPKLEKLPFDCTSGQERKLIIKGQEKWWNNLQWEDQATQNAFLHCFKTRDFLLNLYHWLESS
Low Complexity Region (SEG)
LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSIlfggslvlveellglerlnvlTITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALPFPHLKELEVNLCPKLEKLPFDCTSGQERKLIIKGQEKWWNNLQWEDQATQNAFLHCFKTRDFLLNLYHWLESS
Disordered region (IsUnstruct)
**YLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALPFPHLKELEVNLCPKLEKLPFDCTSGQERKLIIKGQEKWWNNLQWEDQATQNAFLHCFKTRDFLLNLYHWL***
Disordered Region (DISOPRED)
LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEK***********LFPFARLESLSLYALGNLRSIYPKALPFPHLKELEVNLCPKLEK**************IKGQEKWWNNLQWEDQATQNAFLHCFKTRDFLLNLYHWLE**
Disordered Region (DISEMBL)
LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALPFPHLKELEVNLCPKLEKLPFDCTSGQERKLIIKGQEKWWNNLQWEDQATQNAFLHCFKTRDFLLNLYHWLESS
Disordered Region (DISPRO)
LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKL********QNLFPFARLESLSLYALGNLRSIYPKALPFPHLKELEVNLCPKLEKLPFDCTSGQERKLIIKGQEKWWNNLQWEDQATQNAFLHCFKTRDFLLNLYH*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALPFPHLKELEVNLCPKLEKLPFDCTSGQERKLIIKGQEKWWNNLQWEDQATQNAFLHCFKTRDFLLNLYHWLESS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	309	2.2.26 [Sep-21-2011]
Q9SH22	884	Probable disease resistan	yes	no	0.802	0.280	0.346	1e-26
Q9FLB4	874	Putative disease resistan	no	no	0.857	0.303	0.327	1e-25
Q8RXS5	888	Probable disease resistan	no	no	0.844	0.293	0.360	7e-25
O64973	889	Disease resistance protei	no	no	0.841	0.292	0.349	9e-25
Q8L3R3	885	Disease resistance protei	no	no	0.585	0.204	0.387	8e-23
Q9SI85	893	Probable disease resistan	no	no	0.802	0.277	0.314	4e-22
O23317	719	Probable disease resistan	no	no	0.572	0.246	0.363	5e-22
P60838	894	Probable disease resistan	no	no	0.686	0.237	0.323	1e-21
P60839	884	Probable disease resistan	no	no	0.656	0.229	0.357	4e-21
Q9LVT3	948	Probable disease resistan	no	no	0.873	0.284	0.323	3e-20

>sp|Q9SH22|DRL20_ARATH Probable disease resistance protein At1g63360 OS=Arabidopsis thaliana GN=At1g63360 PE=2 SV=1

 Score =  120 bits (302), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/289 (34%), Positives = 156/289 (53%), Gaps = 41/289 (14%)

Query: 10  LNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLN 69
           LNLEYT ++  I G  IS+L  L+ L++F+   S+   D       L  V+EL  LE L 
Sbjct: 620 LNLEYTRKLESITG--ISSLHNLKVLKLFR---SRLPWD-------LNTVKELETLEHLE 667

Query: 70  VLTITL----QSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEAL 125
           +LT T+    + F + HRLL+   L  I+ +          S+SSL+       RHLE+L
Sbjct: 668 ILTTTIDPRAKQFLSSHRLLSHSRLLEIYGS----------SVSSLN-------RHLESL 710

Query: 126 DMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSK-LRHVTWLILAPNLKHIEV 184
            ++  K L E +I        ++     F SL  V+I+  + LR +T+LI AP ++ + V
Sbjct: 711 SVSTDK-LREFQIKSCSISEIKMGGICNFLSLVDVNIFNCEGLRELTFLIFAPKIRSLSV 769

Query: 185 YNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALPFPHLKELE 244
           ++ + L++II+ EK  E    E   + PF  L  L+L+ L  L+ IY + LPF  L+E+ 
Sbjct: 770 WHAKDLEDIINEEKACE---GEESGILPFPELNFLTLHDLPKLKKIYWRPLPFLCLEEIN 826

Query: 245 VNLCPKLEKLPFDCTSGQ--ERKLIIKGQE-KWWNNLQWEDQATQNAFL 290
           +  CP L KLP D TSG+  E   II+ ++ +W+  ++W D+AT+  FL
Sbjct: 827 IRECPNLRKLPLDSTSGKQGENGCIIRNKDSRWFEGVKWADEATKKRFL 875

Probable disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLB4|DRL31_ARATH Putative disease resistance protein At5g05400 OS=Arabidopsis thaliana GN=At5g05400 PE=2 SV=1

 Score =  117 bits (292), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 98/299 (32%), Positives = 146/299 (48%), Gaps = 34/299 (11%)

Query: 4   LVNLKCLNLEYTY---RIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVE 60
           L NL  LNLE+TY   RIY+I      +L  LE L+++  G    +           LV 
Sbjct: 596 LRNLLYLNLEHTYMLKRIYEI-----HDLPNLEVLKLYASGIDITDK----------LVR 640

Query: 61  ELLGLERLNVLTITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSV--FTLAS 118
           ++  ++ L +LTITL++ + L   L      S    T  L L       SL V   T++S
Sbjct: 641 QIQAMKHLYLLTITLRNSSGLEIFLGDTRFSSY---TEGLTLDEQSYYQSLKVPLATISS 697

Query: 119 LRHLEALDMTNCKDLEEMEIDYAGEEVK-----RIRETHGFFSLHKVSIWG-SKLRHVTW 172
            R LE  D      + ++EI+ +          R+R    F +L KV +   + L+ +TW
Sbjct: 698 SRFLEIQD----SHIPKIEIEGSSSNESEIVGPRVRRDISFINLRKVRLDNCTGLKDLTW 753

Query: 173 LILAPNLKHIEVYNCRYLDEIISLEKLGEVPSE-EMQNLFPFARLESLSLYALGNLRSIY 231
           L+ AP+L  + V     ++ IIS  +   +    E+  + PF  LE L+L  LG L+SIY
Sbjct: 754 LVFAPHLATLYVVCLPDIEHIISRSEESRLQKTCELAGVIPFRELEFLTLRNLGQLKSIY 813

Query: 232 PKALPFPHLKELEVNLCPKLEKLPFDCTSGQERKLIIKGQEKWWNNLQWEDQATQNAFL 290
              L F  LKE+ +  CPKL KLP D  S  ++ ++I  +E+W   LQWED AT+  F 
Sbjct: 814 RDPLLFGKLKEINIKSCPKLTKLPLDSRSAWKQNVVINAEEEWLQGLQWEDVATKERFF 872

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RXS5|DRL40_ARATH Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2

 Score =  114 bits (286), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 105/291 (36%), Positives = 152/291 (52%), Gaps = 30/291 (10%)

Query: 10  LNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLN 69
           LNLEYT  +  I G  IS L  L+ LR+F  G          F     ++ EL  LE L 
Sbjct: 609 LNLEYTRMVESICG--ISGLTSLKVLRLFVSG----------FPEDPCVLNELQLLENLQ 656

Query: 70  VLTITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVF--TLASLRHLEALDM 127
            LTITL   + L + L++   Q + S T +L + N +  SS+  F  T+ SL+ L   D 
Sbjct: 657 TLTITLGLASILEQFLSN---QRLASCTRALRIENLNPQSSVISFVATMDSLQELHFAD- 712

Query: 128 TNCKDLEEMEIDYAGEEVK-RIRETHGFF-SLHKVSI-WGSKLRHVTWLILAPNLKHIEV 184
               D+ E+++      +   I  T  FF +L +VS+ + ++LR +TWLI APNL  + V
Sbjct: 713 ---SDIWEIKVKRNETVLPLHIPTTTTFFPNLSQVSLEFCTRLRDLTWLIFAPNLTVLRV 769

Query: 185 YNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALPFPHLKELE 244
            +   L E+I+ EK       E QNL PF  L+ L L  +  L+ I+   LPFP L+++ 
Sbjct: 770 ISASDLKEVINKEK------AEQQNLIPFQELKELRLENVQMLKHIHRGPLPFPCLQKIL 823

Query: 245 VNLCPKLEKLPFDCTSGQERKLIIKGQEKWWNNLQWEDQATQNAFLHCFKT 295
           VN C +L KLP + TS     L+I+  +KW   L+WED+AT+  FL   K 
Sbjct: 824 VNGCSELRKLPLNFTSVPRGDLVIEAHKKWIEILEWEDEATKARFLPTLKA 874

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64973|RPS5_ARATH Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2

 Score =  114 bits (285), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 100/286 (34%), Positives = 143/286 (50%), Gaps = 26/286 (9%)

Query: 10  LNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLN 69
           LNLE+   +  I G  ISNL  L  L +       ++S  +L    + LV+EL  LE L 
Sbjct: 615 LNLEHMSSLGSILG--ISNLWNLRTLGL-------RDSRLLL---DMSLVKELQLLEHLE 662

Query: 70  VLTITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTN 129
           V+T+ + S      LL S  L           L+      S+ V TL ++ +L  L +  
Sbjct: 663 VITLDISSSLVAEPLLCSQRLVECIKEVDFKYLKE----ESVRVLTLPTMGNLRKLGIKR 718

Query: 130 CKDLEEMEIDYAGEEVKRIRE--THGFFSLHKVSIWGS-KLRHVTWLILAPNLKHIEVYN 186
           C  + E++I+       R +   T  F +L +V I     L+ +TWL+ APNL  +EV  
Sbjct: 719 C-GMREIKIERTTSSSSRNKSPTTPCFSNLSRVFIAKCHGLKDLTWLLFAPNLTFLEVGF 777

Query: 187 CRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALPFPHLKELEVN 246
            + +++IIS EK      E    + PF +LE+L L+ L  L+ IY KAL FP LK + V 
Sbjct: 778 SKEVEDIISEEK----AEEHSATIVPFRKLETLHLFELRGLKRIYAKALHFPCLKVIHVE 833

Query: 247 LCPKLEKLPFDCTSG--QERKLIIKGQEKWWNNLQWEDQATQNAFL 290
            C KL KLP D  SG   E  +I  G+ +W   ++WEDQATQ  FL
Sbjct: 834 KCEKLRKLPLDSKSGIAGEELVIYYGEREWIERVEWEDQATQLRFL 879

Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. Also confers resistance against Hyaloperonospora parasitica (downy mildew). Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Requires PBS1 to trigger the defense reaction against avrPphB. Probably triggers the defense mechanism when PBS1 is cleaved by avrPphB, suggesting that it detects indirectly the protease activity of avrPphB, and possibly binds to the cleaved RPS5.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L3R3|RFL1_ARATH Disease resistance protein RFL1 OS=Arabidopsis thaliana GN=RFL1 PE=3 SV=2

 Score =  107 bits (268), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 74/191 (38%), Positives = 108/191 (56%), Gaps = 10/191 (5%)

Query: 110 SLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWG-SKLR 168
           S+ V  L ++ +L  + + NC      EI       K+      F +L  V I G   L+
Sbjct: 701 SVGVLVLPAIHNLCYISIWNC---WMWEIMIEKTPWKKNLTNPNFSNLSNVRIEGCDGLK 757

Query: 169 HVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLR 228
            +TWL+ APNL ++ V+ C++L++IIS EK   V  +E   + PF +LE L+LY L  L+
Sbjct: 758 DLTWLLFAPNLINLRVWGCKHLEDIISKEKAASVLEKE---ILPFQKLECLNLYQLSELK 814

Query: 229 SIYPKALPFPHLKELEV-NLCPKLEKLPFDCTS-GQERKLIIKGQE-KWWNNLQWEDQAT 285
           SIY  ALPF  L+ L++ N CPKL KLP D  S  +  + +IK +E KW   ++WED+AT
Sbjct: 815 SIYWNALPFQRLRCLDILNNCPKLRKLPLDSKSVVKVEEFVIKYKEKKWIERVEWEDEAT 874

Query: 286 QNAFLHCFKTR 296
           Q  FL   + R
Sbjct: 875 QYRFLPTCRLR 885

Disease resistance (R) protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SI85|DRL14_ARATH Probable disease resistance protein At1g62630 OS=Arabidopsis thaliana GN=At1g62630 PE=3 SV=2

 Score =  105 bits (262), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 91/289 (31%), Positives = 144/289 (49%), Gaps = 41/289 (14%)

Query: 10  LNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLN 69
           LNLE+T ++  I G  IS+L  L+ L+++  GS             L  V+EL  LE L 
Sbjct: 622 LNLEHTSKLESIDG--ISSLHNLKVLKLY--GSR--------LPWDLNTVKELETLEHLE 669

Query: 70  VLTITL----QSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEAL 125
           +LT T+    + F + HRL++   L  IF +                    +  R LE+L
Sbjct: 670 ILTTTIDPRAKQFLSSHRLMSRSRLLQIFGSN-----------------IFSPDRQLESL 712

Query: 126 DMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSK-LRHVTWLILAPNLKHIEV 184
            ++  K L E EI        ++     F SL  V+I+  + LR +T+LI AP L+ + V
Sbjct: 713 SVSTDK-LREFEIMCCSISEIKMGGICNFLSLVDVTIYNCEGLRELTFLIFAPKLRSLSV 771

Query: 185 YNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALPFPHLKELE 244
            + + L++II+ EK  E    E   + PF  L+ L+L  L  L++IY + LPF  L+++ 
Sbjct: 772 VDAKDLEDIINEEKACE---GEDSGIVPFPELKYLNLDDLPKLKNIYRRPLPFLCLEKIT 828

Query: 245 VNLCPKLEKLPFDCTSGQERK---LIIKGQEKWWNNLQWEDQATQNAFL 290
           +  CP L KLP D  SG++ +   +I     +W   ++W D+AT+  FL
Sbjct: 829 IGECPNLRKLPLDSRSGKQGENGCIIHYKDSRWLKGVKWADEATKKRFL 877

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O23317|DRL24_ARATH Probable disease resistance protein At4g14610 OS=Arabidopsis thaliana GN=At4g14610 PE=3 SV=1

 Score =  105 bits (261), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 69/190 (36%), Positives = 105/190 (55%), Gaps = 13/190 (6%)

Query: 110 SLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWG-SKLR 168
           S  + T  S+ ++  + +  C  ++E++++        +R +  F SL KV I     L+
Sbjct: 536 SFKILTFPSMCNIRRIGIWKC-GMKEIKVE--------MRTSSCFSSLSKVVIGQCDGLK 586

Query: 169 HVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLR 228
            +TWL+ APNL +++      L++IIS EK   V  E    + PF +LE LSL  L  L+
Sbjct: 587 ELTWLLFAPNLTYLDARFAEQLEDIISEEKAASVTDENASIIIPFQKLECLSLSDLPKLK 646

Query: 229 SIYPKALPFPHLKELEVNL-CPKLEKLPFDCTSGQER-KLIIK-GQEKWWNNLQWEDQAT 285
           SIY   L FP L EL V   CPKL+KLP +  SG    +L++K G+ KW   ++WED+AT
Sbjct: 647 SIYWSPLSFPRLSELAVQEHCPKLKKLPLNSKSGTAGVELVVKYGENKWLEGVEWEDKAT 706

Query: 286 QNAFLHCFKT 295
           +  FL   K+
Sbjct: 707 ELRFLATCKS 716

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P60838|DRL1_ARATH Probable disease resistance protein At1g12280 OS=Arabidopsis thaliana GN=At1g12280 PE=3 SV=1

 Score =  103 bits (258), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 119/229 (51%), Gaps = 17/229 (7%)

Query: 72  TITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCK 131
            I+++S   + +LL +P L         L LR     SS  V TL  + +L  + +  C 
Sbjct: 665 NISIKSSLVVEKLLNAPRLVKCLQ---ILVLRGVQEESS-GVLTLPDMDNLNKVIIRKCG 720

Query: 132 ----DLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVTWLILAPNLKHIEVYNC 187
                +E   +  +     + +  H   ++H  S  G  L+ +TWL+ APNL  +EV + 
Sbjct: 721 MCEIKIERKTLSLSSNRSPKTQFLHNLSTVHISSCDG--LKDLTWLLFAPNLTSLEVLDS 778

Query: 188 RYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALPFPHLKELEVNL 247
             ++ II+ EK     +  M  + PF +LESL L+ L  LRSIY + L FP LK + +  
Sbjct: 779 ELVEGIINQEK-----AMTMSGIIPFQKLESLRLHNLAMLRSIYWQPLSFPCLKTIHITK 833

Query: 248 CPKLEKLPFDC-TSGQERKLIIKGQ-EKWWNNLQWEDQATQNAFLHCFK 294
           CP+L KLP D   + ++ +L+IK Q E+W   ++W+++AT+  FL  FK
Sbjct: 834 CPELRKLPLDSEIAIRDEELVIKYQEEEWLERVEWDNEATRLRFLPFFK 882

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P60839|DRL2_ARATH Probable disease resistance protein At1g12290 OS=Arabidopsis thaliana GN=At1g12290 PE=2 SV=1

 Score =  102 bits (253), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 114/224 (50%), Gaps = 21/224 (9%)

Query: 72  TITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCK 131
           TI + S +AL +LL S  L           L       S+ + TL S+  L  + +  C 
Sbjct: 667 TIEIISSSALEQLLCSHRLVRCLQKVSVKYLDE----ESVRILTLPSIGDLREVFIGGC- 721

Query: 132 DLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWG-SKLRHVTWLILAPNLKHIEVYNCRYL 190
            + ++ I     E      +  F +L KV I G + L+ +TWL+ APNL H+ V+N R +
Sbjct: 722 GMRDIII-----ERNTSLTSPCFPNLSKVLITGCNGLKDLTWLLFAPNLTHLNVWNSRQI 776

Query: 191 DEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALPFPHLKELEV-NLCP 249
           +EIIS EK          ++ PF +LE L L+ L  L+SIY   LPFP L ++ V N C 
Sbjct: 777 EEIISQEK------ASTADIVPFRKLEYLHLWDLPELKSIYWNPLPFPCLNQINVQNKCR 830

Query: 250 KLEKLPFD---CTSGQERKLIIKGQEKWWNNLQWEDQATQNAFL 290
           KL KLP D   C    E  +I  G E+W   ++WED+AT+  FL
Sbjct: 831 KLTKLPLDSQSCIVAGEELVIQYGDEEWKERVEWEDKATRLRFL 874

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVT3|DRL38_ARATH Probable disease resistance protein At5g47260 OS=Arabidopsis thaliana GN=At5g47260 PE=3 SV=2

 Score = 99.4 bits (246), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 99/306 (32%), Positives = 158/306 (51%), Gaps = 36/306 (11%)

Query: 1   LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVE 60
           LK L +L  L+L+YT  + ++   VI++L  L+ LR+F   S             L L+E
Sbjct: 587 LKELKSLIHLDLDYTSNLQEV--DVIASLLNLQVLRLFHSVSM-----------DLKLME 633

Query: 61  ELLGLERLNVLTITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLR 120
           ++  L+ L  L++T++  + L RLL   S+Q + S+   L L    ++    + +L ++ 
Sbjct: 634 DIQLLKSLKELSLTVRGSSVLQRLL---SIQRLASSIRRLHLTET-TIVDGGILSLNAIF 689

Query: 121 HLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSK-LRHVTWLILAPNL 179
            L  LD+  C  LE + ID+     + I     F ++  ++I   + LR +TWL+LAP L
Sbjct: 690 SLCELDILGCNILE-ITIDWRCTIQREI--IPQFQNIRTMTIHRCEYLRDLTWLLLAPCL 746

Query: 180 KHIEVYNCRYLDEIIS----LEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKAL 235
             + V  C  ++E+IS    + KLG    +      PF  L  L L  L  L SIY   L
Sbjct: 747 GELSVSECPQMEEVISKDKAMAKLGNTSEQ------PFQNLTKLVLDGLPKLESIYWTPL 800

Query: 236 PFPHLKELEVNLCPKLEKLPFDCTS--GQERKLIIKGQEKWWNNLQWEDQATQNAFLHCF 293
           PFP L+ L +  CP+L +LPF+  S  G + + II  +E+    ++WED+AT+  F H F
Sbjct: 801 PFPVLEYLVIRRCPELRRLPFNSESTIGNQVETII--EEQVIKIVEWEDEATKQRFSH-F 857

Query: 294 KTRDFL 299
             RDF+
Sbjct: 858 NNRDFV 863

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	309
24461866	890	NBS-LRR type disease resistance protein	0.925	0.321	0.474	2e-63
24461865	892	NBS-LRR type disease resistance protein	0.915	0.317	0.48	3e-59
24461863	889	NBS-LRR type disease resistance protein	0.928	0.322	0.461	9e-58
24461861	890	NBS-LRR type disease resistance protein	0.906	0.314	0.478	4e-54
224122896	820	cc-nbs-lrr resistance protein [Populus t	0.886	0.334	0.427	8e-53
24461864	899	NBS-LRR type disease resistance protein	0.912	0.313	0.441	4e-52
147866649	350	hypothetical protein VITISV_018478 [Viti	0.932	0.822	0.411	1e-47
225442867	893	PREDICTED: probable disease resistance p	0.899	0.311	0.398	3e-46
225443158	903	PREDICTED: probable disease resistance p	0.938	0.321	0.381	3e-46
359482672	905	PREDICTED: probable disease resistance p	0.935	0.319	0.386	3e-45

>gi|24461866|gb|AAN62353.1|AF506028_20 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 142/299 (47%), Positives = 193/299 (64%), Gaps = 13/299 (4%)

Query: 1   LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSS---KQESDSILFGGSLV 57
           LK LVNLKCLNLEYT+ +  IP Q+ISNL  L  LRMF    S   +   DSILFGG  +
Sbjct: 601 LKALVNLKCLNLEYTWSLTTIPRQLISNLSRLHVLRMFAASHSAFDRASEDSILFGGGEL 660

Query: 58  LVEELLGLERLNVLTITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLA 117
           +VEELLGL+ L V++ TL+S   L   L+S  L+S    T +L L+  +  +SL V  LA
Sbjct: 661 IVEELLGLKYLEVISFTLRSSHGLQSFLSSHKLRSC---TRALLLQCFNDSTSLEVSALA 717

Query: 118 SLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWG-SKLRHVTWLILA 176
            L+ L  L +T CK LEE+++DY  E  + +     F SL KV I   SKL+ +T+L+ A
Sbjct: 718 DLKQLNRLWITECKKLEELKMDYTREVQQFV-----FHSLKKVEILACSKLKDLTFLVFA 772

Query: 177 PNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALP 236
           PNL+ IE+  C  ++E++S+ K  EVP E + NL PFA+L++L L+   NL+SIY K LP
Sbjct: 773 PNLESIELMGCPAMEEMVSMGKFAEVP-EVVANLNPFAKLQNLKLFGATNLKSIYWKPLP 831

Query: 237 FPHLKELEVNLCPKLEKLPFDCTSGQERKLIIKGQEKWWNNLQWEDQATQNAFLHCFKT 295
           FPHLK +  + C KL+KLP D  S +ER ++I G  +WW  L+W D+AT+NAFL CF +
Sbjct: 832 FPHLKSMSFSHCYKLKKLPLDSNSARERNIVISGTRRWWEQLEWVDEATRNAFLPCFDS 890

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461865|gb|AAN62352.1|AF506028_19 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  234 bits (598), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 144/300 (48%), Positives = 190/300 (63%), Gaps = 17/300 (5%)

Query: 1   LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESD-----SILFGGS 55
           LK LVNLKCL+LEYT  +  IP Q+ISNL  L  LRMF  G+S    D     SILFGG 
Sbjct: 602 LKALVNLKCLDLEYTRNLITIPRQLISNLSRLRVLRMF--GASHNAFDEASENSILFGGG 659

Query: 56  LVLVEELLGLERLNVLTITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFT 115
            ++VEELLGL+ L V+T+TL+S   L   L S  L+S    T +L L++    +SL V  
Sbjct: 660 ELIVEELLGLKHLEVITLTLRSSYGLQSFLNSHKLRSC---TQALLLQHFKDSTSLEVSA 716

Query: 116 LASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGS-KLRHVTWLI 174
           LA L+ L  L + N   LEE+++DYA EEV++      F SL+ V I    +L+ +T+L+
Sbjct: 717 LADLKQLNRLQIANSVILEELKMDYA-EEVQQF----AFRSLNMVEICNCIQLKDLTFLV 771

Query: 175 LAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKA 234
            APNLK I+V  C  ++EI S  K  EVP E M NL PF +L++L +    NL+SIY K+
Sbjct: 772 FAPNLKSIKVGICHAMEEIASEGKFAEVP-EVMANLNPFEKLQNLEVAGARNLKSIYWKS 830

Query: 235 LPFPHLKELEVNLCPKLEKLPFDCTSGQERKLIIKGQEKWWNNLQWEDQATQNAFLHCFK 294
           LPFPHLK +    C KL+KLP D  S +ERK++I G+  W   LQWED+AT+NAFL CF+
Sbjct: 831 LPFPHLKAMSFLHCKKLKKLPLDSNSAKERKIVISGERNWREQLQWEDEATRNAFLRCFR 890

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461863|gb|AAN62350.1|AF506028_17 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  229 bits (585), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 137/297 (46%), Positives = 188/297 (63%), Gaps = 10/297 (3%)

Query: 1   LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQES--DSILFGGSLVL 58
           LK LVNLKCLNL +   + KIP Q+ISN   L  LRMF  G S  E+  DS+LFGG  VL
Sbjct: 597 LKLLVNLKCLNLRWATWLSKIPRQLISNSSRLHVLRMFATGCSHSEASEDSVLFGGGEVL 656

Query: 59  VEELLGLERLNVLTITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLAS 118
           ++ELLGL+ L VL +TL+S  AL    +S  L+S   +     +R   S+   + F  A 
Sbjct: 657 IQELLGLKYLEVLELTLRSSHALQLFFSSNKLKSCIRSLLLDEVRGTKSIIDATAF--AD 714

Query: 119 LRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGS-KLRHVTWLILAP 177
           L HL  L + +  ++EE++IDY  E V++ RE   F SLH+V++    KL+ +T+L+ AP
Sbjct: 715 LNHLNELRIDSVAEVEELKIDYT-EIVRKRREPFVFGSLHRVTLGQCLKLKDLTFLVFAP 773

Query: 178 NLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALPF 237
           NLK +++ NCR ++EIIS+ K  EVP E M ++ PF  L+ L L+ L  L+SIY K LPF
Sbjct: 774 NLKSLQLLNCRAMEEIISVGKFAEVP-EVMGHISPFENLQRLHLFDLPRLKSIYWKPLPF 832

Query: 238 PHLKELEVNLCPKLEKLPFDCTSGQERKLIIKGQEKWWNNLQWEDQATQNAFLHCFK 294
            HLKE+ V+ C +L+KLP D  S    K +I+G+ + WN LQWED ATQ AF  CF+
Sbjct: 833 THLKEMRVHGCNQLKKLPLDSNSA---KFVIRGEAEGWNRLQWEDDATQIAFRSCFQ 886

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461861|gb|AAN62348.1|AF506028_15 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 143/299 (47%), Positives = 194/299 (64%), Gaps = 19/299 (6%)

Query: 1   LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGS---SKQESDSILFGGSLV 57
           LK LVNLKCLNLEYT R+ KIP Q+ISN   L  LRMF            +S+LFGG  +
Sbjct: 605 LKALVNLKCLNLEYTGRLLKIPLQLISNFSRLHVLRMFGNAYFSYGNYPIESVLFGGGEL 664

Query: 58  LVEELLGLERLNVLTITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLA 117
           LVEELLGL+ L VL++TL S  AL   LTS  L+S    T ++ L++    +S+ V  LA
Sbjct: 665 LVEELLGLKHLEVLSLTLGSSRALQSFLTSHMLRSC---TRAMLLQDFQGSTSVDVSGLA 721

Query: 118 SLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSI-WGSKLRHVTWLILA 176
            L+ L+ L +++C +L E++IDYAGE V+R    +GF SL    + + SKL+ +T L+L 
Sbjct: 722 DLKRLKRLRISDCYELVELKIDYAGE-VQR----YGFHSLQSFEVNYCSKLKDLTLLVLI 776

Query: 177 PNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALP 236
           PNLK IEV +C  ++EIIS+ +    P+        FA+L+ L +  L NL+SIY K LP
Sbjct: 777 PNLKSIEVTDCEAMEEIISVGEFAGNPN-------AFAKLQYLGIGNLPNLKSIYWKPLP 829

Query: 237 FPHLKELEVNLCPKLEKLPFDCTSGQERKLIIKGQEKWWNNLQWEDQATQNAFLHCFKT 295
           FP L+EL V+ C +L+KLP D  S +E K++I+G   WW NLQWED+ATQNAFL CF++
Sbjct: 830 FPCLEELTVSDCYELKKLPLDSNSAKEHKIVIRGAANWWRNLQWEDEATQNAFLSCFQS 888

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122896|ref|XP_002318943.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222857319|gb|EEE94866.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  213 bits (542), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 129/302 (42%), Positives = 176/302 (58%), Gaps = 28/302 (9%)

Query: 1   LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQE-SDSILFGGSLVLV 59
           LK LV LKCLNLE+TY +  IP QVISN   L  LRMF C SS     D +  GG   L 
Sbjct: 535 LKNLVKLKCLNLEHTYELRTIPMQVISNFSSLTVLRMFHCASSDSVVGDGVQTGGPGSLA 594

Query: 60  EELLGLERLNVLTIT------LQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSV 113
            +L  LE LN+LTIT      LQ+FA+ ++ LT+         T +L L+  H   SL +
Sbjct: 595 RDLQCLEHLNLLTITIRSQYSLQTFASFNKFLTA---------TQALSLQKFHHARSLDI 645

Query: 114 FTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWG-SKLRHVTW 172
             L  +  L+ L++ +C +L+++ I+ +       RET  F SL +VSI   +KL  + W
Sbjct: 646 SLLEGMNSLDDLELIDCSNLKDLSINNSS----ITRET-SFNSLRRVSIVNCTKLEDLAW 700

Query: 173 LILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYP 232
           L LAPN+K + +  C  ++EII  EK G+      +NL  F  LE L L +L  L+ IYP
Sbjct: 701 LTLAPNIKFLTISRCSKMEEIIRQEKSGQ------RNLKVFEELEFLRLVSLPKLKVIYP 754

Query: 233 KALPFPHLKELEVNLCPKLEKLPFDCTSGQERKLIIKGQEKWWNNLQWEDQATQNAFLHC 292
            ALPFP LKE+ V+ CP L KLP +  S +E +++I+G E WW  L+WED+A Q+ FLH 
Sbjct: 755 DALPFPSLKEIFVDDCPNLRKLPLNSNSAKEHRIVIQGWEDWWRRLEWEDEAAQHTFLHS 814

Query: 293 FK 294
           FK
Sbjct: 815 FK 816

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461864|gb|AAN62351.1|AF506028_18 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 132/299 (44%), Positives = 178/299 (59%), Gaps = 17/299 (5%)

Query: 1   LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGS---SKQESDSILFGGSLV 57
           L  L NLK LNL+ T+ +  IP Q+IS    L  LRMF  G    + + +DS LF G  +
Sbjct: 612 LNALENLKSLNLDQTHYLITIPRQLISRFSCLVVLRMFGVGDWSPNGKRNDSDLFSGGDL 671

Query: 58  LVEELLGLERLNVLTITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLA 117
           LVE L GL+ L VL++TL +   L  +L S  L+S    T +L L +      L V  LA
Sbjct: 672 LVEALRGLKHLEVLSLTLNNSQDLQCVLNSEKLRSC---TQALYLHSFKRSEPLDVSALA 728

Query: 118 SLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGS-KLRHVTWLILA 176
            L HL  L +  C++LEE+         K  R+   F SL K+ I+G  +L+++T+L+ A
Sbjct: 729 GLEHLNRLWIHECEELEEL---------KMARQPFVFQSLEKIQIYGCHRLKNLTFLLFA 779

Query: 177 PNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALP 236
           PNLK IEV +C  ++EIIS  K  + P E M  + PFA+L SL L  L  L+SIY + LP
Sbjct: 780 PNLKSIEVSSCFAMEEIISEVKFADFP-EVMPIIKPFAQLYSLRLGGLTVLKSIYKRPLP 838

Query: 237 FPHLKELEVNLCPKLEKLPFDCTSGQERKLIIKGQEKWWNNLQWEDQATQNAFLHCFKT 295
           FP L++L VN C +L KLP D  S +ERK++I+G  KWW  LQWEDQ TQNAF  CF++
Sbjct: 839 FPCLRDLTVNSCDELRKLPLDSNSAKERKIVIRGYTKWWEQLQWEDQDTQNAFRPCFRS 897

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147866649|emb|CAN81572.1| hypothetical protein VITISV_018478 [Vitis vinifera]

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 126/306 (41%), Positives = 188/306 (61%), Gaps = 18/306 (5%)

Query: 1   LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQE--SDSILFGGSLVL 58
           LK L  LKCL L    ++  IP Q+IS+L ML+ + MF  G S++    D IL   +  L
Sbjct: 45  LKNLGKLKCLVLVDMPQLSSIPEQLISSLSMLQVIDMFNSGISERTVLKDGILSDDNEAL 104

Query: 59  VEELLGLERLNVLTITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLAS 118
           V+EL  L+ L+ L +++ S +A  RLL+S  ++S  S    LCL+N +  SSL++ +L++
Sbjct: 105 VQELESLKYLHGLGVSVTSASAFKRLLSSDKIRSCISR---LCLKNFNGSSSLNLTSLSN 161

Query: 119 LRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFS-------LHKVSIWG----SKL 167
           ++ L +L + NC  LE++EID+A E  K   E++   S        H +S  G    S+L
Sbjct: 162 VKCLLSLYIPNCGSLEDLEIDWAWEG-KETTESNSLNSKVSSHNSFHSLSWLGVERCSRL 220

Query: 168 RHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNL 227
           + +TWL+ APNLK + + +C  + EII   K GE  +E  +NL PFA+L+ L L  L  L
Sbjct: 221 KDLTWLVFAPNLKVLLITSCDQMQEIIGTGKCGE-SAENGENLSPFAKLQVLHLDDLPQL 279

Query: 228 RSIYPKALPFPHLKELEVNLCPKLEKLPFDCTSGQERKLIIKGQEKWWNNLQWEDQATQN 287
           +SI+ KALPF +L  + V+ CP L+KLP D  S +  +++I GQ +WWN ++WED+ATQN
Sbjct: 280 KSIFWKALPFIYLNTIYVDSCPLLKKLPLDANSAKGHRIVISGQTEWWNEVEWEDEATQN 339

Query: 288 AFLHCF 293
           AFL CF
Sbjct: 340 AFLPCF 345

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442867|ref|XP_002281592.1| PREDICTED: probable disease resistance protein At5g63020-like [Vitis vinifera]

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 121/304 (39%), Positives = 178/304 (58%), Gaps = 26/304 (8%)

Query: 1   LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVE 60
           LK L  LK L L +  R+  IP Q+IS+L ML+ + MF CG         +  G   LVE
Sbjct: 600 LKNLGKLKFL-LLHRMRLSSIPEQLISSLSMLQVIDMFNCG---------ICDGDEALVE 649

Query: 61  ELLGLERLNVLTITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLR 120
           EL  L+ L+ L +T+ S +A  RLL+S  L+S  S    +CL N +  SSL++ +L +++
Sbjct: 650 ELESLKYLHDLGVTITSASAFKRLLSSDKLKSCIS---GVCLENFNGSSSLNLTSLCNVK 706

Query: 121 HLEALDMTNCKDLEEMEIDYAGEEVKRIRETH------GFFSLHKVSIW-----GSKLRH 169
            L  L ++NC   E++EID+A E  +     +         S H +S W      S+L+ 
Sbjct: 707 RLRNLFISNCGSSEDLEIDWAWEGKETTESNYLNSKVSSHSSFHNLS-WLRVKRCSRLKD 765

Query: 170 VTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRS 229
           +TWL+ APNLK + + +C  + EII   K GE  +E  +NL PF +L+ L+L  L  L+S
Sbjct: 766 LTWLVFAPNLKVLLITSCDQMQEIIGTGKCGE-STENGENLSPFVKLQVLTLEDLPQLKS 824

Query: 230 IYPKALPFPHLKELEVNLCPKLEKLPFDCTSGQERKLIIKGQEKWWNNLQWEDQATQNAF 289
           I+ KALPF +L  + V+ CP L+KLP D  S +E +++I GQ +W+N L WE++AT NAF
Sbjct: 825 IFWKALPFIYLNTIYVDSCPLLKKLPLDANSAKEHRIVISGQTEWFNELDWENEATHNAF 884

Query: 290 LHCF 293
           L CF
Sbjct: 885 LPCF 888

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443158|ref|XP_002263674.1| PREDICTED: probable disease resistance protein At5g63020-like [Vitis vinifera]

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 117/307 (38%), Positives = 178/307 (57%), Gaps = 17/307 (5%)

Query: 1   LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVE 60
            K LVNLK LNL+YT ++  IP  V+S++  L+ L+MF CG      D++L  G+  LV 
Sbjct: 601 FKNLVNLKYLNLDYTQQLGIIPRHVVSSMSRLQVLKMFHCGFYGVGEDNVLSDGNEALVN 660

Query: 61  ELLGLERLNVLTITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLR 120
           EL  L  L  L IT++S +AL R L S  ++     T  L L+  + L+SL +  L +++
Sbjct: 661 ELECLNNLCDLNITIRSASALQRCLCSEKIEGC---TQDLFLQFFNGLNSLDISFLENMK 717

Query: 121 HLEALDMTNCKDLEEMEIDYA--GEEV---------KRIRETHGFFSLHKVSIWGS-KLR 168
            L+ L +++C  L ++ I+    G+E+          +I     F SL  V I     L+
Sbjct: 718 RLDTLHISDCATLADLNINGTDEGQEILTSDNYLDNSKITSLKNFHSLRSVRIERCLMLK 777

Query: 169 HVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLR 228
            +TWL+ APNL ++ +  CR ++++I   K   V + E +N+ PFA+LE L L  L  L+
Sbjct: 778 DLTWLVFAPNLVNLWIVFCRNIEQVIDSGKW--VEAAEGRNMSPFAKLEDLILIDLPKLK 835

Query: 229 SIYPKALPFPHLKELEVNLCPKLEKLPFDCTSGQERKLIIKGQEKWWNNLQWEDQATQNA 288
           SIY   L FP LKE+ V+ CPKL+KLP +  S + R ++I G++ W N L+WED+A  NA
Sbjct: 836 SIYRNTLAFPCLKEVRVHCCPKLKKLPLNSNSAKGRGMVIYGEKDWRNELEWEDEAAHNA 895

Query: 289 FLHCFKT 295
           FL CF++
Sbjct: 896 FLPCFRS 902

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482672|ref|XP_003632805.1| PREDICTED: probable disease resistance protein At1g12280-like [Vitis vinifera]

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 118/305 (38%), Positives = 180/305 (59%), Gaps = 16/305 (5%)

Query: 1   LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQE--SDSILFGGSLVL 58
           LK L  LKCL L    ++  IP Q+IS+L ML+ + MF  G S++    D IL   +  L
Sbjct: 600 LKNLDKLKCLVLVDMPQLSSIPEQLISSLSMLQVIDMFNSGISERTVLKDGILSDDNEAL 659

Query: 59  VEELLGLERLNVLTITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLAS 118
           V+EL  L+ L+ L ++++S +A  RLL+S  L+   S    LCL+N +  SSL++ +L++
Sbjct: 660 VQELESLKYLHGLGVSVKSASAFKRLLSSYKLRICIS---GLCLKNFNGSSSLNLTSLSN 716

Query: 119 LRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETH------GFFSLHKVSIWG----SKLR 168
            + L +L ++ C  LE++EID+AGE  + +   +         S H +   G    S+L+
Sbjct: 717 AKCLSSLYISKCGSLEDLEIDWAGEGKETVESNYLNSKVSSHNSFHSLVWLGIERCSRLK 776

Query: 169 HVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLR 228
            +TWL+  PNLK + + +C  + E+I   K GE  +E  +NL PF +L+ L L  L  L+
Sbjct: 777 DLTWLVFVPNLKVLTIIDCDQMQEVIGTGKCGE-SAENGENLSPFVKLQVLELDDLPQLK 835

Query: 229 SIYPKALPFPHLKELEVNLCPKLEKLPFDCTSGQERKLIIKGQEKWWNNLQWEDQATQNA 288
           SI+ KALPF +L  + V  CP L+KLP    S +  +++I G  KWWN ++WED+ATQN 
Sbjct: 836 SIFWKALPFIYLNTIHVRNCPLLKKLPLSANSAKGNRIVIAGHNKWWNEVEWEDEATQNV 895

Query: 289 FLHCF 293
           FL CF
Sbjct: 896 FLPCF 900

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	309
TAIR|locus:2201986	885	RFL1 "AT1G12210" [Arabidopsis	0.585	0.204	0.387	5.9e-25
TAIR|locus:2153474	874	AT5G05400 [Arabidopsis thalian	0.870	0.307	0.324	5.3e-24
TAIR|locus:2166320	888	AT5G63020 [Arabidopsis thalian	0.682	0.237	0.361	6.4e-23
TAIR|locus:2201996	889	RPS5 "AT1G12220" [Arabidopsis	0.569	0.197	0.381	6.4e-23
TAIR|locus:2031356	884	AT1G63360 [Arabidopsis thalian	0.893	0.312	0.324	1e-22
TAIR|locus:2034770	894	SUMM2 "AT1G12280" [Arabidopsis	0.682	0.236	0.324	1.1e-22
TAIR|locus:2171589	948	AT5G47260 [Arabidopsis thalian	0.695	0.226	0.327	1.1e-22
TAIR|locus:2034765	884	AT1G12290 [Arabidopsis thalian	0.886	0.309	0.313	5.9e-22
TAIR|locus:2132741	892	AT4G10780 [Arabidopsis thalian	0.692	0.239	0.32	1.2e-21
TAIR|locus:2031366	898	AT1G63350 "AT1G63350" [Arabido	0.501	0.172	0.370	4e-20

TAIR|locus:2201986 RFL1 "AT1G12210" [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 74/191 (38%), Positives = 113/191 (59%)

Query:   110 SLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSK-LR 168
             S+ V  L ++ +L  + + NC  + E+ I+    + K +   + F +L  V I G   L+
Sbjct:   701 SVGVLVLPAIHNLCYISIWNCW-MWEIMIEKTPWK-KNLTNPN-FSNLSNVRIEGCDGLK 757

Query:   169 HVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLR 228
              +TWL+ APNL ++ V+ C++L++IIS EK   V  +E   + PF +LE L+LY L  L+
Sbjct:   758 DLTWLLFAPNLINLRVWGCKHLEDIISKEKAASVLEKE---ILPFQKLECLNLYQLSELK 814

Query:   229 SIYPKALPFPHLKELEV-NLCPKLEKLPFDCTSGQE-RKLIIKGQEKWW-NNLQWEDQAT 285
             SIY  ALPF  L+ L++ N CPKL KLP D  S  +  + +IK +EK W   ++WED+AT
Sbjct:   815 SIYWNALPFQRLRCLDILNNCPKLRKLPLDSKSVVKVEEFVIKYKEKKWIERVEWEDEAT 874

Query:   286 QNAFLHCFKTR 296
             Q  FL   + R
Sbjct:   875 QYRFLPTCRLR 885

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2153474 AT5G05400 [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 95/293 (32%), Positives = 141/293 (48%)

Query:     4 LVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSIXXXXXXXXXXXXX 63
             L NL  LNLE+TY + +I    I +L  LE L+++  G     +D +             
Sbjct:   596 LRNLLYLNLEHTYMLKRI--YEIHDLPNLEVLKLYASGIDI--TDKLVRQIQAMKHLYLL 651

Query:    64 XXXXXXXXTITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSV--FTLASLRH 121
                     TITL++ + L   L      S    T  L L       SL V   T++S R 
Sbjct:   652 --------TITLRNSSGLEIFLGDTRFSSY---TEGLTLDEQSYYQSLKVPLATISSSRF 700

Query:   122 LEALDMTNCKDLEEMEIDYAGE-EV--KRIRETHGFFSLHKVSIWG-SKLRHVTWLILAP 177
             LE  D ++   +E +E   + E E+   R+R    F +L KV +   + L+ +TWL+ AP
Sbjct:   701 LEIQD-SHIPKIE-IEGSSSNESEIVGPRVRRDISFINLRKVRLDNCTGLKDLTWLVFAP 758

Query:   178 NLKHIEVYNCRYLDEIISLEKLGEVPSE-EMQNLFPFARLESLSLYALGNLRSIYPKALP 236
             +L  + V     ++ IIS  +   +    E+  + PF  LE L+L  LG L+SIY   L 
Sbjct:   759 HLATLYVVCLPDIEHIISRSEESRLQKTCELAGVIPFRELEFLTLRNLGQLKSIYRDPLL 818

Query:   237 FPHLKELEVNLCPKLEKLPFDCTSGQERKLIIKGQEKWWNNLQWEDQATQNAF 289
             F  LKE+ +  CPKL KLP D  S  ++ ++I  +E+W   LQWED AT+  F
Sbjct:   819 FGKLKEINIKSCPKLTKLPLDSRSAWKQNVVINAEEEWLQGLQWEDVATKERF 871

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2166320 AT5G63020 [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 6.4e-23, P = 6.4e-23
 Identities = 82/227 (36%), Positives = 126/227 (55%)

Query:    72 TITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCK 131
             TITL   + L + L++   Q + S T +L + N +  SS+  F +A++  L+ L   +  
Sbjct:   659 TITLGLASILEQFLSN---QRLASCTRALRIENLNPQSSVISF-VATMDSLQELHFAD-S 713

Query:   132 DLEEMEIDYAGEEVK--RIRETHGFF-SLHKVSI-WGSKLRHVTWLILAPNLKHIEVYNC 187
             D+ E+++    E V    I  T  FF +L +VS+ + ++LR +TWLI APNL  + V + 
Sbjct:   714 DIWEIKVK-RNETVLPLHIPTTTTFFPNLSQVSLEFCTRLRDLTWLIFAPNLTVLRVISA 772

Query:   188 RYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALPFPHLKELEVNL 247
               L E+I+ EK       E QNL PF  L+ L L  +  L+ I+   LPFP L+++ VN 
Sbjct:   773 SDLKEVINKEKA------EQQNLIPFQELKELRLENVQMLKHIHRGPLPFPCLQKILVNG 826

Query:   248 CPKLEKLPFDCTSGQERKLIIKGQEKWWNNLQWEDQATQNAFLHCFK 294
             C +L KLP + TS     L+I+  +KW   L+WED+AT+  FL   K
Sbjct:   827 CSELRKLPLNFTSVPRGDLVIEAHKKWIEILEWEDEATKARFLPTLK 873

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2201996 RPS5 "AT1G12220" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 6.4e-23, P = 6.4e-23
 Identities = 71/186 (38%), Positives = 102/186 (54%)

Query:   110 SLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRE--THGFFSLHKVSIWGSK- 166
             S+ V TL ++ +L  L +  C  + E++I+       R +   T  F +L +V I     
Sbjct:   699 SVRVLTLPTMGNLRKLGIKRC-GMREIKIERTTSSSSRNKSPTTPCFSNLSRVFIAKCHG 757

Query:   167 LRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGN 226
             L+ +TWL+ APNL  +EV   + +++IIS EK      E    + PF +LE+L L+ L  
Sbjct:   758 LKDLTWLLFAPNLTFLEVGFSKEVEDIISEEKA----EEHSATIVPFRKLETLHLFELRG 813

Query:   227 LRSIYPKALPFPHLKELEVNLCPKLEKLPFDCTSG--QERKLIIKGQEKWWNNLQWEDQA 284
             L+ IY KAL FP LK + V  C KL KLP D  SG   E  +I  G+ +W   ++WEDQA
Sbjct:   814 LKRIYAKALHFPCLKVIHVEKCEKLRKLPLDSKSGIAGEELVIYYGEREWIERVEWEDQA 873

Query:   285 TQNAFL 290
             TQ  FL
Sbjct:   874 TQLRFL 879

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0006952 "defense response" evidence=IMP;TAS

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008219 "cell death" evidence=IMP

GO:0038023 "signaling receptor activity" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IMP

GO:0005622 "intracellular" evidence=ISS

TAIR|locus:2031356 AT1G63360 [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 96/296 (32%), Positives = 148/296 (50%)

Query:     4 LVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQES-DSIXXXXXXXXXXXX 62
             LV+LK LNL YT  I  +P + I  LK +  L +    + K ES   I            
Sbjct:   591 LVSLKYLNLLYT-EISHLP-KGIQELKKIIHLNLEY--TRKLESITGISSLHNLKVLKLF 646

Query:    63 XXXXXXXXXTIT-LQSFAALHRLLTS--PSLQSIFSNTPSLCLRNCHSLSSLSVFTLASL 119
                      T+  L++   L  L T+  P  +   S+   L       +   SV +L   
Sbjct:   647 RSRLPWDLNTVKELETLEHLEILTTTIDPRAKQFLSSHRLLSHSRLLEIYGSSVSSLN-- 704

Query:   120 RHLEALDMTNCKDLEEMEIDYAG-EEVKRIRETHGFFSLHKVSIWGSK-LRHVTWLILAP 177
             RHLE+L ++  K L E +I      E+K +     F SL  V+I+  + LR +T+LI AP
Sbjct:   705 RHLESLSVSTDK-LREFQIKSCSISEIK-MGGICNFLSLVDVNIFNCEGLRELTFLIFAP 762

Query:   178 NLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALPF 237
              ++ + V++ + L++II+ EK  E   EE   + PF  L  L+L+ L  L+ IY + LPF
Sbjct:   763 KIRSLSVWHAKDLEDIINEEKACE--GEE-SGILPFPELNFLTLHDLPKLKKIYWRPLPF 819

Query:   238 PHLKELEVNLCPKLEKLPFDCTSGQ--ERKLIIKGQE-KWWNNLQWEDQATQNAFL 290
               L+E+ +  CP L KLP D TSG+  E   II+ ++ +W+  ++W D+AT+  FL
Sbjct:   820 LCLEEINIRECPNLRKLPLDSTSGKQGENGCIIRNKDSRWFEGVKWADEATKKRFL 875

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2034770 SUMM2 "AT1G12280" [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 1.1e-22, P = 1.1e-22
 Identities = 74/228 (32%), Positives = 118/228 (51%)

Query:    73 ITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCK- 131
             I+++S   + +LL +P L         L LR     SS  V TL  + +L  + +  C  
Sbjct:   666 ISIKSSLVVEKLLNAPRLVKCLQ---ILVLRGVQEESS-GVLTLPDMDNLNKVIIRKCGM 721

Query:   132 ---DLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVTWLILAPNLKHIEVYNCR 188
                 +E   +  +     + +  H   ++H  S  G  L+ +TWL+ APNL  +EV +  
Sbjct:   722 CEIKIERKTLSLSSNRSPKTQFLHNLSTVHISSCDG--LKDLTWLLFAPNLTSLEVLDSE 779

Query:   189 YLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALPFPHLKELEVNLC 248
              ++ II+ EK     +  M  + PF +LESL L+ L  LRSIY + L FP LK + +  C
Sbjct:   780 LVEGIINQEK-----AMTMSGIIPFQKLESLRLHNLAMLRSIYWQPLSFPCLKTIHITKC 834

Query:   249 PKLEKLPFDCTSG-QERKLIIKGQEK-WWNNLQWEDQATQNAFLHCFK 294
             P+L KLP D     ++ +L+IK QE+ W   ++W+++AT+  FL  FK
Sbjct:   835 PELRKLPLDSEIAIRDEELVIKYQEEEWLERVEWDNEATRLRFLPFFK 882

GO:0006952 "defense response" evidence=IGI;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2171589 AT5G47260 [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
 Identities = 76/232 (32%), Positives = 123/232 (53%)

Query:    72 TITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCK 131
             ++T++  + L RLL   S+Q + S+   L L     +    + +L ++  L  LD+  C 
Sbjct:   645 SLTVRGSSVLQRLL---SIQRLASSIRRLHLTETTIVDG-GILSLNAIFSLCELDILGCN 700

Query:   132 DLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSK-LRHVTWLILAPNLKHIEVYNCRYL 190
              LE + ID+     + I     F ++  ++I   + LR +TWL+LAP L  + V  C  +
Sbjct:   701 ILE-ITIDWRCTIQREIIPQ--FQNIRTMTIHRCEYLRDLTWLLLAPCLGELSVSECPQM 757

Query:   191 DEIISLEK-LGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALPFPHLKELEVNLCP 249
             +E+IS +K + ++ +   Q   PF  L  L L  L  L SIY   LPFP L+ L +  CP
Sbjct:   758 EEVISKDKAMAKLGNTSEQ---PFQNLTKLVLDGLPKLESIYWTPLPFPVLEYLVIRRCP 814

Query:   250 KLEKLPF--DCTSGQERKLIIKGQEKWWNNLQWEDQATQNAFLHCFKTRDFL 299
             +L +LPF  + T G + + II  +E+    ++WED+AT+  F H F  RDF+
Sbjct:   815 ELRRLPFNSESTIGNQVETII--EEQVIKIVEWEDEATKQRFSH-FNNRDFV 863

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

TAIR|locus:2034765 AT1G12290 [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 5.9e-22, P = 5.9e-22
 Identities = 94/300 (31%), Positives = 142/300 (47%)

Query:     4 LVNLKCLNLEYTYRIYKIPGQVISNLKMLEA-LRMFKCGSSKQESDSIXXXXXXXXXXXX 62
             LV+L+ L+L Y+  I ++P  ++   K++   L    C  S    D +            
Sbjct:   588 LVSLRYLDLSYS-SIGRLPVGLLKLKKLMHLNLESMLCLESVSGIDHLSNLKTVRLLNLR 646

Query:    63 XXXXXXXXXTIT-LQSFAALH-RLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLR 120
                       +  L++   L   +++S +L+ +     S  L  C  L  +SV  L    
Sbjct:   647 MWLTISLLEELERLENLEVLTIEIISSSALEQLLC---SHRLVRC--LQKVSVKYLDE-E 700

Query:   121 HLEALDMTNCKDLEEMEIDYAG-EEVKRIRETH----GFFSLHKVSIWGSK-LRHVTWLI 174
              +  L + +  DL E+ I   G  ++   R T      F +L KV I G   L+ +TWL+
Sbjct:   701 SVRILTLPSIGDLREVFIGGCGMRDIIIERNTSLTSPCFPNLSKVLITGCNGLKDLTWLL 760

Query:   175 LAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKA 234
              APNL H+ V+N R ++EIIS EK          ++ PF +LE L L+ L  L+SIY   
Sbjct:   761 FAPNLTHLNVWNSRQIEEIISQEKASTA------DIVPFRKLEYLHLWDLPELKSIYWNP 814

Query:   235 LPFPHLKELEV-NLCPKLEKLPFD---CTSGQERKLIIKGQEKWWNNLQWEDQATQNAFL 290
             LPFP L ++ V N C KL KLP D   C    E  +I  G E+W   ++WED+AT+  FL
Sbjct:   815 LPFPCLNQINVQNKCRKLTKLPLDSQSCIVAGEELVIQYGDEEWKERVEWEDKATRLRFL 874

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2132741 AT4G10780 [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 1.2e-21, P = 1.2e-21
 Identities = 72/225 (32%), Positives = 117/225 (52%)

Query:    72 TITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCK 131
             TI + S   L +++ + +L +        CL   +     +   L ++  L +L M NC 
Sbjct:   663 TIDIVSTMVLEQMIDAGTLMNCMQEVSIRCL--IYDQEQDTKLRLPTMDSLRSLTMWNC- 719

Query:   132 DLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWG-SKLRHVTWLILAPNLKHIEVYNCRYL 190
             ++ E+EI+              FF+L +V I   S L+ +TWL+ APN+ ++ +     L
Sbjct:   720 EISEIEIERLTWNTNPTSPC--FFNLSQVIIHVCSSLKDLTWLLFAPNITYLMIEQLEQL 777

Query:   191 DEIISLEKLGEVPSEEMQNL---FPFARLESLSLYALGNLRSIYPKALPFPHLKELEVNL 247
              E+IS  K   V  EE Q L    PF +L+ L L +L  L+SIY  +L FP L  + V  
Sbjct:   778 QELISHAKATGVTEEEQQQLHKIIPFQKLQILHLSSLPELKSIYWISLSFPCLSGIYVER 837

Query:   248 CPKLEKLPFDCTSGQE-RKLIIKGQE-KWWNNLQWEDQATQNAFL 290
             CPKL KLP D  +G   +K +++ +E +W  +++W+D+AT+  FL
Sbjct:   838 CPKLRKLPLDSKTGTVGKKFVLQYKETEWIESVEWKDEATKLHFL 882

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2031366 AT1G63350 "AT1G63350" [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 4.0e-20, P = 4.0e-20
 Identities = 60/162 (37%), Positives = 93/162 (57%)

Query:   133 LEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSK-LRHVTWLILAPNLKHIEVYNCRYLD 191
             L+E  I++      ++     F SL +V++   + LR +T+L+ APNLK + V +   L+
Sbjct:   713 LQEFTIEHCHTSEIKMGRICSFSSLIEVNLSNCRRLRELTFLMFAPNLKRLHVVSSNQLE 772

Query:   192 EIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALPFPHLKELEVNLCPKL 251
             +II+ EK  +    E   + PF +L  L LY L  L++IY   LPFP L+++ V  CP L
Sbjct:   773 DIINKEKAHD---GEKSGIVPFPKLNELHLYNLRELKNIYWSPLPFPCLEKINVMGCPNL 829

Query:   252 EKLPFDCTSGQE--RKLIIKGQE-KWWNNLQWEDQATQNAFL 290
             +KLP D  SG+     LII  +E +W   ++WED+AT+  FL
Sbjct:   830 KKLPLDSKSGKHGGNGLIITHREMEWITRVEWEDEATKTRFL 871

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	309
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.73
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.7
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.66
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.63
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.61
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.57
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.52
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.42
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.4
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.3
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.3
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.2
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.15
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.14
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.12
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.1
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.08
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.07
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.02
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.01
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.97
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.95
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.9
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.87
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.78
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.77
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.64
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.59
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.58
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.54
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.46
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.45
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.43
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.33
KOG4341	483	consensus F-box protein containing LRR [General fu	98.27
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.26
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.22
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.16
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.11
PRK15386	426	type III secretion protein GogB; Provisional	98.1
PRK15386	426	type III secretion protein GogB; Provisional	98.05
KOG4341	483	consensus F-box protein containing LRR [General fu	97.97
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.79
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.79
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.79
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.79
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.73
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.69
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.63
PLN03150	623	hypothetical protein; Provisional	97.6
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.6
PLN03150	623	hypothetical protein; Provisional	97.48
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.42
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.35
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.33
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.3
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.22
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.06
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.79
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.72
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.57
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.37
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.0
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	95.6
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.39
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.15
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.13
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.08
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.07
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.05
smart00370	26	LRR Leucine-rich repeats, outliers.	94.89
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.89
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	94.73
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.43
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	91.97
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	91.96
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	89.04
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	81.97

>PLN03210 Resistant to P

Probab=99.73  E-value=3.3e-17  Score=165.86  Aligned_cols=104  Identities=16%  Similarity=0.217  Sum_probs=71.9

Q ss_pred             cccCcceEEEeCc-eecccCccCCCCCccEEEEEcCccccccccccccCC------cCcc-cccCCccCCccceeecccc
Q 035891          153 GFFSLHKVSIWGS-KLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGE------VPSE-EMQNLFPFARLESLSLYAL  224 (309)
Q Consensus       153 ~~~~L~~L~l~~c-~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~------~~~~-~~~~~~~~~~L~~L~L~~~  224 (309)
                      .+++|+.|++++| +++.+|....+++|+.|++++|..+..++....+..      .... -+..+..+++|+.|++.+|
T Consensus       800 ~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C  879 (1153)
T PLN03210        800 NLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGC  879 (1153)
T ss_pred             CCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCC
Confidence            5677777777777 777776555677788888887776665543211100      0000 0124567888999999999


Q ss_pred             ccccccCCCccCCCCccEEeecCcccCCCCCC
Q 035891          225 GNLRSIYPKALPFPHLKELEVNLCPKLEKLPF  256 (309)
Q Consensus       225 ~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~  256 (309)
                      ++++.++.....+++|+.+++.+|++|+.++.
T Consensus       880 ~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l  911 (1153)
T PLN03210        880 NNLQRVSLNISKLKHLETVDFSDCGALTEASW  911 (1153)
T ss_pred             CCcCccCcccccccCCCeeecCCCcccccccC
Confidence            99998888777888999999999998886553

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.70  E-value=9.3e-17  Score=162.61  Aligned_cols=200  Identities=22%  Similarity=0.315  Sum_probs=119.6

Q ss_pred             CcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhcC
Q 035891            7 LKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLLT   86 (309)
Q Consensus         7 Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~~   86 (309)
                      ||+|.+.++ .++.+|.. + .+.+|++|++.++.+             ..++.++..+++|+.++++.+.  .+..++.
T Consensus       591 Lr~L~~~~~-~l~~lP~~-f-~~~~L~~L~L~~s~l-------------~~L~~~~~~l~~Lk~L~Ls~~~--~l~~ip~  652 (1153)
T PLN03210        591 LRLLRWDKY-PLRCMPSN-F-RPENLVKLQMQGSKL-------------EKLWDGVHSLTGLRNIDLRGSK--NLKEIPD  652 (1153)
T ss_pred             cEEEEecCC-CCCCCCCc-C-CccCCcEEECcCccc-------------cccccccccCCCCCEEECCCCC--CcCcCCc
Confidence            444444444 44444443 2 344555555555444             3456667778888888886432  2222222


Q ss_pred             CcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCc-
Q 035891           87 SPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGS-  165 (309)
Q Consensus        87 ~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c-  165 (309)
                      ...    +++|+.|++.+|..+..+| ..+..+++|+.|++++|+.++.++...            .+++|+.|++++| 
T Consensus       653 ls~----l~~Le~L~L~~c~~L~~lp-~si~~L~~L~~L~L~~c~~L~~Lp~~i------------~l~sL~~L~Lsgc~  715 (1153)
T PLN03210        653 LSM----ATNLETLKLSDCSSLVELP-SSIQYLNKLEDLDMSRCENLEILPTGI------------NLKSLYRLNLSGCS  715 (1153)
T ss_pred             ccc----CCcccEEEecCCCCccccc-hhhhccCCCCEEeCCCCCCcCccCCcC------------CCCCCCEEeCCCCC
Confidence            222    4478888888888877776 457778888888888888777776533            3455555555555 


Q ss_pred             eecccCccCCCCCccEEEEEc-----------------------------------------------------Cccccc
Q 035891          166 KLRHVTWLILAPNLKHIEVYN-----------------------------------------------------CRYLDE  192 (309)
Q Consensus       166 ~l~~l~~l~~l~~L~~L~l~~-----------------------------------------------------c~~l~~  192 (309)
                      .++.+|.  ..++|++|++.+                                                     |..+.+
T Consensus       716 ~L~~~p~--~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~  793 (1153)
T PLN03210        716 RLKSFPD--ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE  793 (1153)
T ss_pred             Ccccccc--ccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccc
Confidence            4443331  123333333333                                                     322222


Q ss_pred             cccccccCCcCcccccCCccCCccceeeccccccccccCCCccCCCCccEEeecCcccCCCCCCC
Q 035891          193 IISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALPFPHLKELEVNLCPKLEKLPFD  257 (309)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~  257 (309)
                      ++             ..++.+++|+.|++.+|+.++.+|... .+++|+.|++++|.+++.+|..
T Consensus       794 lP-------------~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~  844 (1153)
T PLN03210        794 LP-------------SSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI  844 (1153)
T ss_pred             cC-------------hhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc
Confidence            22             345677888888888888888877654 6788888888888888776653

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.66  E-value=2.3e-16  Score=158.47  Aligned_cols=213  Identities=16%  Similarity=0.185  Sum_probs=103.4

Q ss_pred             CCCCCCcEEecCCCcCCC-CCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecch-
Q 035891            2 KYLVNLKCLNLEYTYRIY-KIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFA-   79 (309)
Q Consensus         2 ~~L~~Lr~L~l~~~~~l~-~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~-   79 (309)
                      +.+.+|++|++++| .+. .+|.. ++++++|++|++++|.+.            ...+..+.++++|++|++..+... 
T Consensus       137 ~~l~~L~~L~Ls~n-~~~~~~p~~-~~~l~~L~~L~L~~n~l~------------~~~p~~~~~l~~L~~L~L~~n~l~~  202 (968)
T PLN00113        137 GSIPNLETLDLSNN-MLSGEIPND-IGSFSSLKVLDLGGNVLV------------GKIPNSLTNLTSLEFLTLASNQLVG  202 (968)
T ss_pred             cccCCCCEEECcCC-cccccCChH-HhcCCCCCEEECccCccc------------ccCChhhhhCcCCCeeeccCCCCcC
Confidence            35778888888888 655 57776 888888888888888775            344555556666666666544322 


Q ss_pred             hhhh-hcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCc------------c-c
Q 035891           80 ALHR-LLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGE------------E-V  145 (309)
Q Consensus        80 ~l~~-~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~------------~-~  145 (309)
                      .++. +..       +++|+.|+++++.....++ ..+..+++|+.|+++++.....++..+...            . .
T Consensus       203 ~~p~~l~~-------l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  274 (968)
T PLN00113        203 QIPRELGQ-------MKSLKWIYLGYNNLSGEIP-YEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG  274 (968)
T ss_pred             cCChHHcC-------cCCccEEECcCCccCCcCC-hhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeec
Confidence            1111 111       2245555555543322232 234444555555555432111222111100            0 0


Q ss_pred             ccCCCcccccCcceEEEeCceec-ccC-ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccc
Q 035891          146 KRIRETHGFFSLHKVSIWGSKLR-HVT-WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYA  223 (309)
Q Consensus       146 ~~~~~~~~~~~L~~L~l~~c~l~-~l~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~  223 (309)
                      ..+.....+++|+.|++++|++. .+| ++..+++|++|++++|.....++             ..+..+++|+.|++.+
T Consensus       275 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-------------~~~~~l~~L~~L~L~~  341 (968)
T PLN00113        275 PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP-------------VALTSLPRLQVLQLWS  341 (968)
T ss_pred             cCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCC-------------hhHhcCCCCCEEECcC
Confidence            00000003445555555555222 222 23444555555554443222222             2345566666666666


Q ss_pred             cccccccCCCccCCCCccEEeecCcc
Q 035891          224 LGNLRSIYPKALPFPHLKELEVNLCP  249 (309)
Q Consensus       224 ~~~L~~l~~~~~~~~~L~~L~i~~C~  249 (309)
                      +.-...++.....+++|+.|++++|.
T Consensus       342 n~l~~~~p~~l~~~~~L~~L~Ls~n~  367 (968)
T PLN00113        342 NKFSGEIPKNLGKHNNLTVLDLSTNN  367 (968)
T ss_pred             CCCcCcCChHHhCCCCCcEEECCCCe
Confidence            53333444444455666666666653

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.63  E-value=1.6e-15  Score=152.51  Aligned_cols=222  Identities=18%  Similarity=0.171  Sum_probs=142.9

Q ss_pred             CCCCCCcEEecCCCcCCC-CCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecch-
Q 035891            2 KYLVNLKCLNLEYTYRIY-KIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFA-   79 (309)
Q Consensus         2 ~~L~~Lr~L~l~~~~~l~-~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~-   79 (309)
                      .++.+||+|++++| .+. .+|.   +.+++|++|++++|.+.            ...+..++.+++|+.|+++.+... 
T Consensus       115 ~~l~~L~~L~Ls~n-~l~~~~p~---~~l~~L~~L~Ls~n~~~------------~~~p~~~~~l~~L~~L~L~~n~l~~  178 (968)
T PLN00113        115 TTSSSLRYLNLSNN-NFTGSIPR---GSIPNLETLDLSNNMLS------------GEIPNDIGSFSSLKVLDLGGNVLVG  178 (968)
T ss_pred             ccCCCCCEEECcCC-ccccccCc---cccCCCCEEECcCCccc------------ccCChHHhcCCCCCEEECccCcccc
Confidence            37889999999999 665 5664   57999999999999986            567788999999999999876543 


Q ss_pred             hhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcce
Q 035891           80 ALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHK  159 (309)
Q Consensus        80 ~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~  159 (309)
                      .++....  .    +++|+.|++++|.....++ ..+..+++|+.|+++++.-...++..+.           .+++|++
T Consensus       179 ~~p~~~~--~----l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~-----------~l~~L~~  240 (968)
T PLN00113        179 KIPNSLT--N----LTSLEFLTLASNQLVGQIP-RELGQMKSLKWIYLGYNNLSGEIPYEIG-----------GLTSLNH  240 (968)
T ss_pred             cCChhhh--h----CcCCCeeeccCCCCcCcCC-hHHcCcCCccEEECcCCccCCcCChhHh-----------cCCCCCE
Confidence            2332211  2    4479999999977655555 5678899999999998643334443332           5677777


Q ss_pred             EEEeCceec-ccC-ccCCCCCccEEEEEcCccccccccccccC-----------CcCcccccCCccCCccceeecccccc
Q 035891          160 VSIWGSKLR-HVT-WLILAPNLKHIEVYNCRYLDEIISLEKLG-----------EVPSEEMQNLFPFARLESLSLYALGN  226 (309)
Q Consensus       160 L~l~~c~l~-~l~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~-----------~~~~~~~~~~~~~~~L~~L~L~~~~~  226 (309)
                      |++++|++. .+| .++.+++|++|++++|.....++......           .....-...+..+++|+.|++.++..
T Consensus       241 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~  320 (968)
T PLN00113        241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF  320 (968)
T ss_pred             EECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCcc
Confidence            777777333 233 45566777777776664332222100000           00000002345667777777777543


Q ss_pred             ccccCCCccCCCCccEEeecCcccCCCCCCC
Q 035891          227 LRSIYPKALPFPHLKELEVNLCPKLEKLPFD  257 (309)
Q Consensus       227 L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~  257 (309)
                      ...++.....+++|+.|++++|.--..+|..
T Consensus       321 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~  351 (968)
T PLN00113        321 TGKIPVALTSLPRLQVLQLWSNKFSGEIPKN  351 (968)
T ss_pred             CCcCChhHhcCCCCCEEECcCCCCcCcCChH
Confidence            3344444557788888888877544445543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.61  E-value=3.2e-16  Score=152.32  Aligned_cols=270  Identities=31%  Similarity=0.428  Sum_probs=179.2

Q ss_pred             CCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCc---------cccC--CcccchhhhhccCCCce
Q 035891            2 KYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDS---------ILFG--GSLVLVEELLGLERLNV   70 (309)
Q Consensus         2 ~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~---------~l~~--~~~~~~~~l~~L~~L~~   70 (309)
                      ..+++||+||+++|..+..+|.+ |+.|.+||+|+++++.+..+|.++         ++..  .....+.....|.+|++
T Consensus       568 ~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~  646 (889)
T KOG4658|consen  568 RSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRV  646 (889)
T ss_pred             hhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccE
Confidence            45889999999988788889998 999999999999999998777753         1111  11122333444777777


Q ss_pred             EEEEEecch----hhhhhcCCcCccccCCCcCeEEEecCCC-------------------------CCeecccCcccccc
Q 035891           71 LTITLQSFA----ALHRLLTSPSLQSIFSNTPSLCLRNCHS-------------------------LSSLSVFTLASLRH  121 (309)
Q Consensus        71 L~l~~~~~~----~l~~~~~~~~l~~~l~~L~~L~l~~~~~-------------------------l~~~~~~~l~~l~~  121 (309)
                      |.+......    .+.++..       +.+|+.+.+..+..                         .... ...+..+.+
T Consensus       647 L~l~~s~~~~~~~~l~el~~-------Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~-~~~~~~l~~  718 (889)
T KOG4658|consen  647 LRLPRSALSNDKLLLKELEN-------LEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTL-ISSLGSLGN  718 (889)
T ss_pred             EEeeccccccchhhHHhhhc-------ccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccccccee-ecccccccC
Confidence            777644311    1222211       11333333332211                         1111 135677889


Q ss_pred             CCEEEEecCCCCceEEcCccCcccccCCCccc-ccCcceEEEeCc-eecccCccCCCCCccEEEEEcCcccccccccccc
Q 035891          122 LEALDMTNCKDLEEMEIDYAGEEVKRIRETHG-FFSLHKVSIWGS-KLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKL  199 (309)
Q Consensus       122 L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~-~~~L~~L~l~~c-~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~  199 (309)
                      |+.|.+.+|...+.... +....    ... . |+++..+.+.+| .++.+.|....|+|+.|.+..|..++++++....
T Consensus       719 L~~L~i~~~~~~e~~~~-~~~~~----~~~-~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~  792 (889)
T KOG4658|consen  719 LEELSILDCGISEIVIE-WEESL----IVL-LCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKA  792 (889)
T ss_pred             cceEEEEcCCCchhhcc-ccccc----chh-hhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHH
Confidence            99999999866543221 11000    000 2 778999999999 8888878889999999999999999999876553


Q ss_pred             CCcCcccccCCccCCcccee-eccccccccccCCCccCCCCccEEeecCcccCCCCCCCCCCCC-C--cceEEEcchhcc
Q 035891          200 GEVPSEEMQNLFPFARLESL-SLYALGNLRSIYPKALPFPHLKELEVNLCPKLEKLPFDCTSGQ-E--RKLIIKGQEKWW  275 (309)
Q Consensus       200 ~~~~~~~~~~~~~~~~L~~L-~L~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~-~--~l~~~~~~~~~~  275 (309)
                      ......   ....|.++..+ .+.+.+.++++......++.|+.+.+..||+++.+|....... .  .......+.+|.
T Consensus       793 ~~~l~~---~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~  869 (889)
T KOG4658|consen  793 LLELKE---LILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWL  869 (889)
T ss_pred             hhhccc---EEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccccccceeccccceeecCCccce
Confidence            221111   12345555555 4666666777777677888899999999999999998765543 2  334445677888


Q ss_pred             ccceecCccccccc
Q 035891          276 NNLQWEDQATQNAF  289 (309)
Q Consensus       276 ~~l~~~~~~~~~~~  289 (309)
                      +.++|.+++...+|
T Consensus       870 ~~v~~~~~~~~~~~  883 (889)
T KOG4658|consen  870 EGVYWEDELTKLRF  883 (889)
T ss_pred             eeEEehhhhhhhhc
Confidence            89999999988887

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.57  E-value=4.2e-16  Score=139.61  Aligned_cols=206  Identities=20%  Similarity=0.240  Sum_probs=105.8

Q ss_pred             CCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhh
Q 035891            3 YLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALH   82 (309)
Q Consensus         3 ~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~   82 (309)
                      .|.+|-.|.|+.| .++.+|..+|++|++|+.|++..|.+.            ....-.++.|++|+.|.+..++...+.
T Consensus       195 ~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~ir------------ive~ltFqgL~Sl~nlklqrN~I~kL~  261 (873)
T KOG4194|consen  195 SLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIR------------IVEGLTFQGLPSLQNLKLQRNDISKLD  261 (873)
T ss_pred             ccchheeeecccC-cccccCHHHhhhcchhhhhhcccccee------------eehhhhhcCchhhhhhhhhhcCccccc
Confidence            3444555555555 555555444444555555555555543            111233455555555555555444433


Q ss_pred             hhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEE
Q 035891           83 RLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSI  162 (309)
Q Consensus        83 ~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l  162 (309)
                      .-.-    .+ +.++++|++.. ++++.+....+-++..|+.|+++. +.++.+..+...          ..++|+.|++
T Consensus       262 DG~F----y~-l~kme~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS~-NaI~rih~d~Ws----------ftqkL~~LdL  324 (873)
T KOG4194|consen  262 DGAF----YG-LEKMEHLNLET-NRLQAVNEGWLFGLTSLEQLDLSY-NAIQRIHIDSWS----------FTQKLKELDL  324 (873)
T ss_pred             Ccce----ee-ecccceeeccc-chhhhhhcccccccchhhhhccch-hhhheeecchhh----------hcccceeEec
Confidence            2111    00 23455555555 334444433444555555555555 455555443322          4555666666


Q ss_pred             eCceecccC--------------------------ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCcc
Q 035891          163 WGSKLRHVT--------------------------WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARL  216 (309)
Q Consensus       163 ~~c~l~~l~--------------------------~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L  216 (309)
                      +.|+++.++                          .+..+.+|+.|++..+. +...+        ++ .-..+.++++|
T Consensus       325 s~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~-ls~~I--------ED-aa~~f~gl~~L  394 (873)
T KOG4194|consen  325 SSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE-LSWCI--------ED-AAVAFNGLPSL  394 (873)
T ss_pred             cccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe-EEEEE--------ec-chhhhccchhh
Confidence            555444443                          12233444444444331 11111        00 00345668888


Q ss_pred             ceeeccccccccccCCCcc-CCCCccEEeecCcc
Q 035891          217 ESLSLYALGNLRSIYPKAL-PFPHLKELEVNLCP  249 (309)
Q Consensus       217 ~~L~L~~~~~L~~l~~~~~-~~~~L~~L~i~~C~  249 (309)
                      +.|.+.+ +++++++..++ .++.||.|++.+.+
T Consensus       395 rkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~Na  427 (873)
T KOG4194|consen  395 RKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNA  427 (873)
T ss_pred             hheeecC-ceeeecchhhhccCcccceecCCCCc
Confidence            8888888 58888888666 78888888888753

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.52  E-value=4.9e-16  Score=140.38  Aligned_cols=235  Identities=18%  Similarity=0.187  Sum_probs=133.6

Q ss_pred             CCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCc--c--------cc-CCcccchhhhhccCCCceEE
Q 035891            4 LVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDS--I--------LF-GGSLVLVEELLGLERLNVLT   72 (309)
Q Consensus         4 L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~--~--------l~-~~~~~~~~~l~~L~~L~~L~   72 (309)
                      |.-|..|||+.| +++..|.+ +..-+++-+|++++|.+..+|-.+  +        +. ..-+.+|..+..|.+|++|.
T Consensus       102 l~dLt~lDLShN-qL~EvP~~-LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~  179 (1255)
T KOG0444|consen  102 LKDLTILDLSHN-QLREVPTN-LEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLK  179 (1255)
T ss_pred             cccceeeecchh-hhhhcchh-hhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhh
Confidence            444555555555 55555555 555555555555555555444321  1        11 11245666666677777776


Q ss_pred             EEEecchhh--hhhcCCcCc---cc---------------cCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCC
Q 035891           73 ITLQSFAAL--HRLLTSPSL---QS---------------IFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKD  132 (309)
Q Consensus        73 l~~~~~~~l--~~~~~~~~l---~~---------------~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~  132 (309)
                      ++++....+  ..++....+   ..               .+.||..++++. +++..+| ..+-++++|+.|++++ +.
T Consensus       180 Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vP-ecly~l~~LrrLNLS~-N~  256 (1255)
T KOG0444|consen  180 LSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVP-ECLYKLRNLRRLNLSG-NK  256 (1255)
T ss_pred             cCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcch-HHHhhhhhhheeccCc-Cc
Confidence            665544321  111111100   00               144566666655 4555555 3455677888888888 67


Q ss_pred             CceEEcCccCcccccCCCcccccCcceEEEeCceecccC-ccCCCCCccEEEEEcCccccc-ccccccc-C-------Cc
Q 035891          133 LEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVT-WLILAPNLKHIEVYNCRYLDE-IISLEKL-G-------EV  202 (309)
Q Consensus       133 l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l~-~l~~l~~L~~L~l~~c~~l~~-~~~~~~~-~-------~~  202 (309)
                      ++++.....           ...+|++|+++.|+++.+| .+..++.|+.|.+.++..--+ ++..-+. .       +.
T Consensus       257 iteL~~~~~-----------~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan  325 (1255)
T KOG0444|consen  257 ITELNMTEG-----------EWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN  325 (1255)
T ss_pred             eeeeeccHH-----------HHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc
Confidence            777765443           4556666666666666555 345566666666654432211 1111000 0       00


Q ss_pred             Cc--ccccCCccCCccceeeccccccccccCCCccCCCCccEEeecCcccCCCCC
Q 035891          203 PS--EEMQNLFPFARLESLSLYALGNLRSIYPKALPFPHLKELEVNLCPKLEKLP  255 (309)
Q Consensus       203 ~~--~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp  255 (309)
                      ..  ..++++..+++|+.|.|.. +.|..+|.++.-++.|+.|+++..|+|..-|
T Consensus       326 N~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  326 NKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             cccccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCCC
Confidence            00  0115788899999999986 6888999999999999999999999997543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.42  E-value=5.4e-14  Score=126.31  Aligned_cols=229  Identities=20%  Similarity=0.223  Sum_probs=113.7

Q ss_pred             cEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCc---------cccCC--cccchhhhhccCCCceEEEEEe
Q 035891            8 KCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDS---------ILFGG--SLVLVEELLGLERLNVLTITLQ   76 (309)
Q Consensus         8 r~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~---------~l~~~--~~~~~~~l~~L~~L~~L~l~~~   76 (309)
                      +.|++++| .+..+....|.++++||.+++..|..+.+|...         .+...  ....-+++.-++.|++|+++.+
T Consensus        81 ~~LdlsnN-kl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN  159 (873)
T KOG4194|consen   81 QTLDLSNN-KLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN  159 (873)
T ss_pred             eeeecccc-ccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence            56888888 788776555788888888888888886444321         01100  1222334555555555555544


Q ss_pred             cchhhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccC
Q 035891           77 SFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFS  156 (309)
Q Consensus        77 ~~~~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~  156 (309)
                      ....++.-....     -.++++|++++ +.++.+...++..+.+|..|.++. +.+..++...+.          .++.
T Consensus       160 ~is~i~~~sfp~-----~~ni~~L~La~-N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk----------~L~~  222 (873)
T KOG4194|consen  160 LISEIPKPSFPA-----KVNIKKLNLAS-NRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFK----------RLPK  222 (873)
T ss_pred             hhhcccCCCCCC-----CCCceEEeecc-ccccccccccccccchheeeeccc-CcccccCHHHhh----------hcch
Confidence            443332211100     11466666665 344555444555555666666665 556666555443          4666


Q ss_pred             cceEEEeCceeccc--CccCCCCCccEEEEEcCc--cccccc--cccccCCcC--cc-----cccCCccCCccceeeccc
Q 035891          157 LHKVSIWGSKLRHV--TWLILAPNLKHIEVYNCR--YLDEII--SLEKLGEVP--SE-----EMQNLFPFARLESLSLYA  223 (309)
Q Consensus       157 L~~L~l~~c~l~~l--~~l~~l~~L~~L~l~~c~--~l~~~~--~~~~~~~~~--~~-----~~~~~~~~~~L~~L~L~~  223 (309)
                      |+.|++..|.++.+  ..+..+++|+.|.+..+.  .+++..  +-++.....  ..     ....+.++++|+.|++++
T Consensus       223 L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~  302 (873)
T KOG4194|consen  223 LESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSY  302 (873)
T ss_pred             hhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccch
Confidence            66666666633322  134556666666554331  111100  000000000  00     002334556666666665


Q ss_pred             cccccccCCCcc-CCCCccEEeecCcccCCCCCC
Q 035891          224 LGNLRSIYPKAL-PFPHLKELEVNLCPKLEKLPF  256 (309)
Q Consensus       224 ~~~L~~l~~~~~-~~~~L~~L~i~~C~~L~~lp~  256 (309)
                       +.+..+....- .+++|+.|+++. .++++++.
T Consensus       303 -NaI~rih~d~WsftqkL~~LdLs~-N~i~~l~~  334 (873)
T KOG4194|consen  303 -NAIQRIHIDSWSFTQKLKELDLSS-NRITRLDE  334 (873)
T ss_pred             -hhhheeecchhhhcccceeEeccc-cccccCCh
Confidence             34544443222 456666666665 35555554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.40  E-value=6.7e-15  Score=133.16  Aligned_cols=233  Identities=17%  Similarity=0.221  Sum_probs=135.1

Q ss_pred             CCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCc---------ccc---CCcccchhhhhccCCCce
Q 035891            3 YLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDS---------ILF---GGSLVLVEELLGLERLNV   70 (309)
Q Consensus         3 ~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~---------~l~---~~~~~~~~~l~~L~~L~~   70 (309)
                      .++.++.|.|..+ ++..+|++ ++.|.+|++|.+.+|+...+-.+.         .+.   -++..+|.++-.|..|..
T Consensus        30 qMt~~~WLkLnrt-~L~~vPeE-L~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~  107 (1255)
T KOG0444|consen   30 QMTQMTWLKLNRT-KLEQVPEE-LSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTI  107 (1255)
T ss_pred             HhhheeEEEechh-hhhhChHH-HHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhccccccee
Confidence            3567888999998 89999998 899999999999998875432221         011   123456666777777777


Q ss_pred             EEEEEecchhhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCC
Q 035891           71 LTITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRE  150 (309)
Q Consensus        71 L~l~~~~~~~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~  150 (309)
                      |+++.+....+++-....+      ++-.|++++ ++++.+|.+-+.++..|-.|+++. +.++.+|....         
T Consensus       108 lDLShNqL~EvP~~LE~AK------n~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~R---------  170 (1255)
T KOG0444|consen  108 LDLSHNQLREVPTNLEYAK------NSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQIR---------  170 (1255)
T ss_pred             eecchhhhhhcchhhhhhc------CcEEEEccc-CccccCCchHHHhhHhHhhhcccc-chhhhcCHHHH---------
Confidence            7776555444443322222      566677777 556777655566777777777776 67777776655         


Q ss_pred             cccccCcceEEEeCc-----eecccCccCCCCCccEEEEEcCccccccccccccC--------CcCcc---cccCCccCC
Q 035891          151 THGFFSLHKVSIWGS-----KLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLG--------EVPSE---EMQNLFPFA  214 (309)
Q Consensus       151 ~~~~~~L~~L~l~~c-----~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~--------~~~~~---~~~~~~~~~  214 (309)
                        .+.+|++|.+++|     +++.+|   .+++|++|.+++.....+-++..-++        .+.+.   .+..+..++
T Consensus       171 --RL~~LqtL~Ls~NPL~hfQLrQLP---smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~  245 (1255)
T KOG0444|consen  171 --RLSMLQTLKLSNNPLNHFQLRQLP---SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLR  245 (1255)
T ss_pred             --HHhhhhhhhcCCChhhHHHHhcCc---cchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhh
Confidence              5677777777777     333332   34455556665544332222211000        00000   002334455


Q ss_pred             ccceeeccccccccccCCCccCCCCccEEeecCcccCCCCCCCCCCC
Q 035891          215 RLESLSLYALGNLRSIYPKALPFPHLKELEVNLCPKLEKLPFDCTSG  261 (309)
Q Consensus       215 ~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~  261 (309)
                      +|+.|.|++ ++++.+........+||+|.++. .+|..||...-.+
T Consensus       246 ~LrrLNLS~-N~iteL~~~~~~W~~lEtLNlSr-NQLt~LP~avcKL  290 (1255)
T KOG0444|consen  246 NLRRLNLSG-NKITELNMTEGEWENLETLNLSR-NQLTVLPDAVCKL  290 (1255)
T ss_pred             hhheeccCc-CceeeeeccHHHHhhhhhhcccc-chhccchHHHhhh
Confidence            555566655 35555555555555566666555 3555555544433

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.30  E-value=3.6e-13  Score=116.15  Aligned_cols=217  Identities=18%  Similarity=0.242  Sum_probs=119.0

Q ss_pred             CCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCc-cc--------------------cCC------
Q 035891            2 KYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDS-IL--------------------FGG------   54 (309)
Q Consensus         2 ~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~-~l--------------------~~~------   54 (309)
                      +.|.+|.+||+++| ++++.|.+ +..|++|.+||+++|.++.+|... ++                    ..+      
T Consensus       249 ~~L~~l~vLDLRdN-klke~Pde-~clLrsL~rLDlSNN~is~Lp~sLgnlhL~~L~leGNPlrTiRr~ii~~gT~~vLK  326 (565)
T KOG0472|consen  249 KHLNSLLVLDLRDN-KLKEVPDE-ICLLRSLERLDLSNNDISSLPYSLGNLHLKFLALEGNPLRTIRREIISKGTQEVLK  326 (565)
T ss_pred             cccccceeeecccc-ccccCchH-HHHhhhhhhhcccCCccccCCcccccceeeehhhcCCchHHHHHHHHcccHHHHHH
Confidence            47889999999999 99999999 899999999999999998766531 00                    000      


Q ss_pred             ------------------------cccchhhhhccCCCceEEEEEecchhhhhhcCCcCccccCCCcCeEEEecC-----
Q 035891           55 ------------------------SLVLVEELLGLERLNVLTITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNC-----  105 (309)
Q Consensus        55 ------------------------~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~~~~~l~~~l~~L~~L~l~~~-----  105 (309)
                                              ....+.+...+.+.+.|+++....+.++.-.....-..   -....++++.     
T Consensus       327 yLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~---~Vt~VnfskNqL~el  403 (565)
T KOG0472|consen  327 YLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSE---IVTSVNFSKNQLCEL  403 (565)
T ss_pred             HHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhc---ceEEEecccchHhhh
Confidence                                    01111222233444444443333332221110000000   0112222221     


Q ss_pred             ------------------CCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCcee
Q 035891          106 ------------------HSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKL  167 (309)
Q Consensus       106 ------------------~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l  167 (309)
                                        +....++ ..++.+++|..|+++. +-+.++|.++.           .+..|+.|+|+.|.+
T Consensus       404 Pk~L~~lkelvT~l~lsnn~isfv~-~~l~~l~kLt~L~L~N-N~Ln~LP~e~~-----------~lv~Lq~LnlS~NrF  470 (565)
T KOG0472|consen  404 PKRLVELKELVTDLVLSNNKISFVP-LELSQLQKLTFLDLSN-NLLNDLPEEMG-----------SLVRLQTLNLSFNRF  470 (565)
T ss_pred             hhhhHHHHHHHHHHHhhcCccccch-HHHHhhhcceeeeccc-chhhhcchhhh-----------hhhhhheeccccccc
Confidence                              1111111 2233444555555554 44555554444           344455555555544


Q ss_pred             cccCccCC-CCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCccCCCCccEEeec
Q 035891          168 RHVTWLIL-APNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALPFPHLKELEVN  246 (309)
Q Consensus       168 ~~l~~l~~-l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i~  246 (309)
                      +.+|...+ +..+|.+-. ...++..+..            .++..+.+|..|++.+ +.+..+|...+.|.+|++|++.
T Consensus       471 r~lP~~~y~lq~lEtlla-s~nqi~~vd~------------~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~  536 (565)
T KOG0472|consen  471 RMLPECLYELQTLETLLA-SNNQIGSVDP------------SGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELD  536 (565)
T ss_pred             ccchHHHhhHHHHHHHHh-ccccccccCh------------HHhhhhhhcceeccCC-CchhhCChhhccccceeEEEec
Confidence            44442222 222222222 2224444432            3578899999999998 5899999999999999999999


Q ss_pred             Cccc
Q 035891          247 LCPK  250 (309)
Q Consensus       247 ~C~~  250 (309)
                      +.|-
T Consensus       537 gNpf  540 (565)
T KOG0472|consen  537 GNPF  540 (565)
T ss_pred             CCcc
Confidence            9753

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.30  E-value=3.7e-15  Score=128.22  Aligned_cols=223  Identities=20%  Similarity=0.250  Sum_probs=145.0

Q ss_pred             CCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCc----c---c--c-CCcccchhhhhccCCCceE
Q 035891            2 KYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDS----I---L--F-GGSLVLVEELLGLERLNVL   71 (309)
Q Consensus         2 ~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~----~---l--~-~~~~~~~~~l~~L~~L~~L   71 (309)
                      .+|..|.+|++.++ ++..+|+. |+++..++.|+.+.+++..+|.++    .   +  . ..-...+.+++.+..|+.+
T Consensus        65 ~nL~~l~vl~~~~n-~l~~lp~a-ig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl  142 (565)
T KOG0472|consen   65 KNLACLTVLNVHDN-KLSQLPAA-IGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDL  142 (565)
T ss_pred             hcccceeEEEeccc-hhhhCCHH-HHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhh
Confidence            46778889999999 88888887 899999999999999885433321    0   0  0 0112233334444444444


Q ss_pred             EEEEecchhhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCc
Q 035891           72 TITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRET  151 (309)
Q Consensus        72 ~l~~~~~~~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~  151 (309)
                      +...+....+++-...      +..+..+.+.+ +.+...+...+ +|+.|+.|+... +.++.+|.+..          
T Consensus       143 ~~~~N~i~slp~~~~~------~~~l~~l~~~~-n~l~~l~~~~i-~m~~L~~ld~~~-N~L~tlP~~lg----------  203 (565)
T KOG0472|consen  143 DATNNQISSLPEDMVN------LSKLSKLDLEG-NKLKALPENHI-AMKRLKHLDCNS-NLLETLPPELG----------  203 (565)
T ss_pred             hccccccccCchHHHH------HHHHHHhhccc-cchhhCCHHHH-HHHHHHhcccch-hhhhcCChhhc----------
Confidence            4433333333221110      11344455554 33344432222 366777776665 56777776554          


Q ss_pred             ccccCcceEEEeCceecccCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccC
Q 035891          152 HGFFSLHKVSIWGSKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIY  231 (309)
Q Consensus       152 ~~~~~L~~L~l~~c~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~  231 (309)
                       .+.+|..|++..+++..+|.+..+..|+++++..+ +++.++.            +....++++..|++++ ++++++|
T Consensus       204 -~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N-~i~~lpa------------e~~~~L~~l~vLDLRd-Nklke~P  268 (565)
T KOG0472|consen  204 -GLESLELLYLRRNKIRFLPEFPGCSLLKELHVGEN-QIEMLPA------------EHLKHLNSLLVLDLRD-NKLKEVP  268 (565)
T ss_pred             -chhhhHHHHhhhcccccCCCCCccHHHHHHHhccc-HHHhhHH------------HHhcccccceeeeccc-cccccCc
Confidence             67888888888887777877777788888888553 5666653            3456889999999999 5899999


Q ss_pred             CCccCCCCccEEeecCcccCCCCCCCCCCC
Q 035891          232 PKALPFPHLKELEVNLCPKLEKLPFDCTSG  261 (309)
Q Consensus       232 ~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~  261 (309)
                      .+..-+.+|++|++++ ..+..+|.....+
T Consensus       269 de~clLrsL~rLDlSN-N~is~Lp~sLgnl  297 (565)
T KOG0472|consen  269 DEICLLRSLERLDLSN-NDISSLPYSLGNL  297 (565)
T ss_pred             hHHHHhhhhhhhcccC-CccccCCcccccc
Confidence            9999999999999998 4788888765544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.20  E-value=4.6e-11  Score=114.93  Aligned_cols=198  Identities=15%  Similarity=0.205  Sum_probs=105.3

Q ss_pred             CCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhc
Q 035891            6 NLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLL   85 (309)
Q Consensus         6 ~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~   85 (309)
                      +|+.|++++| .++.+|.. +.  .+|++|++++|.+..             ++..+.  .+|+.|+++.+....++...
T Consensus       200 ~L~~L~Ls~N-~LtsLP~~-l~--~nL~~L~Ls~N~Lts-------------LP~~l~--~~L~~L~Ls~N~L~~LP~~l  260 (754)
T PRK15370        200 QITTLILDNN-ELKSLPEN-LQ--GNIKTLYANSNQLTS-------------IPATLP--DTIQEMELSINRITELPERL  260 (754)
T ss_pred             CCcEEEecCC-CCCcCChh-hc--cCCCEEECCCCcccc-------------CChhhh--ccccEEECcCCccCcCChhH
Confidence            5677777777 77777765 32  467777777776642             222222  35666666655544443211


Q ss_pred             CCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcc---------cccCCCcccccC
Q 035891           86 TSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEE---------VKRIRETHGFFS  156 (309)
Q Consensus        86 ~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~---------~~~~~~~~~~~~  156 (309)
                           ..   +|+.|++++ +.+..+|. .+.  ++|+.|++++ ++++.++......+         -..++.. .+++
T Consensus       261 -----~s---~L~~L~Ls~-N~L~~LP~-~l~--~sL~~L~Ls~-N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~-l~~s  326 (754)
T PRK15370        261 -----PS---ALQSLDLFH-NKISCLPE-NLP--EELRYLSVYD-NSIRTLPAHLPSGITHLNVQSNSLTALPET-LPPG  326 (754)
T ss_pred             -----hC---CCCEEECcC-CccCcccc-ccC--CCCcEEECCC-CccccCcccchhhHHHHHhcCCccccCCcc-cccc
Confidence                 11   467777764 34555542 222  3677777776 35555442211000         0001111 3456


Q ss_pred             cceEEEeCceecccCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCccC
Q 035891          157 LHKVSIWGSKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALP  236 (309)
Q Consensus       157 L~~L~l~~c~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~  236 (309)
                      |+.|++++|++..+|. ...++|+.|++++|. +..++             ..  ..++|++|++++| .++.+|.... 
T Consensus       327 L~~L~Ls~N~Lt~LP~-~l~~sL~~L~Ls~N~-L~~LP-------------~~--lp~~L~~LdLs~N-~Lt~LP~~l~-  387 (754)
T PRK15370        327 LKTLEAGENALTSLPA-SLPPELQVLDVSKNQ-ITVLP-------------ET--LPPTITTLDVSRN-ALTNLPENLP-  387 (754)
T ss_pred             ceeccccCCccccCCh-hhcCcccEEECCCCC-CCcCC-------------hh--hcCCcCEEECCCC-cCCCCCHhHH-
Confidence            6666666665555551 223566777776653 33332             11  1357777777775 5666664322 


Q ss_pred             CCCccEEeecCcccCCCCCCC
Q 035891          237 FPHLKELEVNLCPKLEKLPFD  257 (309)
Q Consensus       237 ~~~L~~L~i~~C~~L~~lp~~  257 (309)
                       ++|+.|++++| ++..+|..
T Consensus       388 -~sL~~LdLs~N-~L~~LP~s  406 (754)
T PRK15370        388 -AALQIMQASRN-NLVRLPES  406 (754)
T ss_pred             -HHHHHHhhccC-CcccCchh
Confidence             35777777775 56666654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.15  E-value=2.2e-12  Score=121.50  Aligned_cols=216  Identities=20%  Similarity=0.238  Sum_probs=113.2

Q ss_pred             CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCc----ccc------CCcccchhhhhccCCCceEEEE
Q 035891            5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDS----ILF------GGSLVLVEELLGLERLNVLTIT   74 (309)
Q Consensus         5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~----~l~------~~~~~~~~~l~~L~~L~~L~l~   74 (309)
                      .+|++++++.+ ++..+|. +++.+.+|+.+++.+|.++.+|.++    ++.      .+-+.++..+++++.|++|++.
T Consensus       241 ~nl~~~dis~n-~l~~lp~-wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~  318 (1081)
T KOG0618|consen  241 LNLQYLDISHN-NLSNLPE-WIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQ  318 (1081)
T ss_pred             ccceeeecchh-hhhcchH-HHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeeh
Confidence            57899999999 9999995 6999999999999999997655542    111      1123455566667777777777


Q ss_pred             EecchhhhhhcCC-cC------------ccc-------cCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCc
Q 035891           75 LQSFAALHRLLTS-PS------------LQS-------IFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLE  134 (309)
Q Consensus        75 ~~~~~~l~~~~~~-~~------------l~~-------~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~  134 (309)
                      .+....++...-. ..            +..       ....|+.|++.+ +.+++-..+.+.++++|+.|++++ +.+.
T Consensus       319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan-N~Ltd~c~p~l~~~~hLKVLhLsy-NrL~  396 (1081)
T KOG0618|consen  319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN-NHLTDSCFPVLVNFKHLKVLHLSY-NRLN  396 (1081)
T ss_pred             hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc-Ccccccchhhhccccceeeeeecc-cccc
Confidence            6655544331100 00            000       011233333333 222222123344455555555555 4455


Q ss_pred             eEEcCccCcccccCCCcccccCcceEEEeCceecccC-ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccC
Q 035891          135 EMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVT-WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPF  213 (309)
Q Consensus       135 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~  213 (309)
                      +++.....          .+..|+.|+++||+++.+| .+..++.|++|...++ .+..+              +.+..+
T Consensus       397 ~fpas~~~----------kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN-~l~~f--------------Pe~~~l  451 (1081)
T KOG0618|consen  397 SFPASKLR----------KLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSN-QLLSF--------------PELAQL  451 (1081)
T ss_pred             cCCHHHHh----------chHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCC-ceeec--------------hhhhhc
Confidence            55444433          4445555555555444444 2333344444444332 22222              244556


Q ss_pred             CccceeeccccccccccCCCcc-CCCCccEEeecCccc
Q 035891          214 ARLESLSLYALGNLRSIYPKAL-PFPHLKELEVNLCPK  250 (309)
Q Consensus       214 ~~L~~L~L~~~~~L~~l~~~~~-~~~~L~~L~i~~C~~  250 (309)
                      +.|+.++++. ++|+.+..... .-|.|++|++++.+.
T Consensus       452 ~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  452 PQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             CcceEEeccc-chhhhhhhhhhCCCcccceeeccCCcc
Confidence            6666666664 45554433222 225666666666554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.14  E-value=4.2e-11  Score=115.23  Aligned_cols=184  Identities=17%  Similarity=0.194  Sum_probs=113.3

Q ss_pred             CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhh
Q 035891            5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRL   84 (309)
Q Consensus         5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~   84 (309)
                      .+|++|++++| .++.+|.. +.  .+|+.|++++|.+..+|             ..+.  .+|+.|+++.+....++..
T Consensus       220 ~nL~~L~Ls~N-~LtsLP~~-l~--~~L~~L~Ls~N~L~~LP-------------~~l~--s~L~~L~Ls~N~L~~LP~~  280 (754)
T PRK15370        220 GNIKTLYANSN-QLTSIPAT-LP--DTIQEMELSINRITELP-------------ERLP--SALQSLDLFHNKISCLPEN  280 (754)
T ss_pred             cCCCEEECCCC-ccccCChh-hh--ccccEEECcCCccCcCC-------------hhHh--CCCCEEECcCCccCccccc
Confidence            47899999998 88889876 43  47889999888885432             2221  3455555554433333221


Q ss_pred             cCCcCccccCCCcCeEEEecCCCCCeecccCcc-------------------ccccCCEEEEecCCCCceEEcCccCccc
Q 035891           85 LTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLA-------------------SLRHLEALDMTNCKDLEEMEIDYAGEEV  145 (309)
Q Consensus        85 ~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~-------------------~l~~L~~L~l~~~~~l~~l~~~~~~~~~  145 (309)
                           +..   +|+.|++++| .++.++. .+.                   -.++|+.|++.+| .+..++..      
T Consensus       281 -----l~~---sL~~L~Ls~N-~Lt~LP~-~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N-~Lt~LP~~------  343 (754)
T PRK15370        281 -----LPE---ELRYLSVYDN-SIRTLPA-HLPSGITHLNVQSNSLTALPETLPPGLKTLEAGEN-ALTSLPAS------  343 (754)
T ss_pred             -----cCC---CCcEEECCCC-ccccCcc-cchhhHHHHHhcCCccccCCccccccceeccccCC-ccccCChh------
Confidence                 001   3555555543 2333321 111                   1135555555553 34433321      


Q ss_pred             ccCCCcccccCcceEEEeCceecccCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccc
Q 035891          146 KRIRETHGFFSLHKVSIWGSKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALG  225 (309)
Q Consensus       146 ~~~~~~~~~~~L~~L~l~~c~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~  225 (309)
                             .+++|+.|++++|++..+|. ...++|++|+|++| .+..++.             .+  .+.|+.|+++++ 
T Consensus       344 -------l~~sL~~L~Ls~N~L~~LP~-~lp~~L~~LdLs~N-~Lt~LP~-------------~l--~~sL~~LdLs~N-  398 (754)
T PRK15370        344 -------LPPELQVLDVSKNQITVLPE-TLPPTITTLDVSRN-ALTNLPE-------------NL--PAALQIMQASRN-  398 (754)
T ss_pred             -------hcCcccEEECCCCCCCcCCh-hhcCCcCEEECCCC-cCCCCCH-------------hH--HHHHHHHhhccC-
Confidence                   35799999999997777762 33579999999998 4555542             21  247999999985 


Q ss_pred             cccccCCCcc----CCCCccEEeecCcc
Q 035891          226 NLRSIYPKAL----PFPHLKELEVNLCP  249 (309)
Q Consensus       226 ~L~~l~~~~~----~~~~L~~L~i~~C~  249 (309)
                      ++..+|....    .++.+..|++.+.|
T Consensus       399 ~L~~LP~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        399 NLVRLPESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence            7888776432    45888999998865

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.12  E-value=3e-11  Score=117.96  Aligned_cols=221  Identities=22%  Similarity=0.258  Sum_probs=126.6

Q ss_pred             CCCcEEecCCCcC-CCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhh
Q 035891            5 VNLKCLNLEYTYR-IYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHR   83 (309)
Q Consensus         5 ~~Lr~L~l~~~~~-l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~   83 (309)
                      +.|+.|-+.++.. +..++.++|..++.|++||+++|...            ..+|..++.|-+|+.|+++......+|.
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l------------~~LP~~I~~Li~LryL~L~~t~I~~LP~  612 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSL------------SKLPSSIGELVHLRYLDLSDTGISHLPS  612 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCcc------------CcCChHHhhhhhhhcccccCCCccccch
Confidence            4688898888832 77888888899999999999998876            7788888899999988887666655543


Q ss_pred             hcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCC-CCceEEcCccCc---c-------ccc--CCC
Q 035891           84 LLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCK-DLEEMEIDYAGE---E-------VKR--IRE  150 (309)
Q Consensus        84 ~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~l~~l~~~~~~~---~-------~~~--~~~  150 (309)
                      -..  ++.    .|.+|++.....+..++ .....+.+|++|.+.... ............   +       .+.  ...
T Consensus       613 ~l~--~Lk----~L~~Lnl~~~~~l~~~~-~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~  685 (889)
T KOG4658|consen  613 GLG--NLK----KLIYLNLEVTGRLESIP-GILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLED  685 (889)
T ss_pred             HHH--HHH----hhheecccccccccccc-chhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhh
Confidence            322  222    47778887766666653 233457778887776532 000000000000   0       000  000


Q ss_pred             cccccCcc----eEEEeCc-eecccCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCc-cCCccceeecccc
Q 035891          151 THGFFSLH----KVSIWGS-KLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLF-PFARLESLSLYAL  224 (309)
Q Consensus       151 ~~~~~~L~----~L~l~~c-~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~L~~~  224 (309)
                      ......|.    .+.+.+| .-.....+..+.+|+.|.|.+|...+..+.....        .... .|+++..+.+.+|
T Consensus       686 l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~--------~~~~~~f~~l~~~~~~~~  757 (889)
T KOG4658|consen  686 LLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEES--------LIVLLCFPNLSKVSILNC  757 (889)
T ss_pred             hhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccc--------cchhhhHHHHHHHHhhcc
Confidence            00112222    2222223 1222234667888999999998765433210000        0111 2666666666666


Q ss_pred             ccccccCCCccCCCCccEEeecCcccCCC
Q 035891          225 GNLRSIYPKALPFPHLKELEVNLCPKLEK  253 (309)
Q Consensus       225 ~~L~~l~~~~~~~~~L~~L~i~~C~~L~~  253 (309)
                      ..++..... .-.|+|+.|.+..|+.+..
T Consensus       758 ~~~r~l~~~-~f~~~L~~l~l~~~~~~e~  785 (889)
T KOG4658|consen  758 HMLRDLTWL-LFAPHLTSLSLVSCRLLED  785 (889)
T ss_pred             ccccccchh-hccCcccEEEEeccccccc
Confidence            655554432 2346777777777766655

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.10  E-value=1.8e-10  Score=110.51  Aligned_cols=74  Identities=22%  Similarity=0.304  Sum_probs=45.0

Q ss_pred             CcceEEEeCceecccCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCcc
Q 035891          156 SLHKVSIWGSKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKAL  235 (309)
Q Consensus       156 ~L~~L~l~~c~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~  235 (309)
                      +|+.|++++|.+..+|.  ..++|+.|++++|. +..++                ..+.+|+.|++++ ++++.+|....
T Consensus       383 ~L~~LdLs~N~Lt~LP~--l~s~L~~LdLS~N~-LssIP----------------~l~~~L~~L~Ls~-NqLt~LP~sl~  442 (788)
T PRK15387        383 GLKELIVSGNRLTSLPV--LPSELKELMVSGNR-LTSLP----------------MLPSGLLSLSVYR-NQLTRLPESLI  442 (788)
T ss_pred             ccceEEecCCcccCCCC--cccCCCEEEccCCc-CCCCC----------------cchhhhhhhhhcc-CcccccChHHh
Confidence            45555555554444432  12455555555542 33332                1234678888887 47888887777


Q ss_pred             CCCCccEEeecCcc
Q 035891          236 PFPHLKELEVNLCP  249 (309)
Q Consensus       236 ~~~~L~~L~i~~C~  249 (309)
                      .+++|+.|++++++
T Consensus       443 ~L~~L~~LdLs~N~  456 (788)
T PRK15387        443 HLSSETTVNLEGNP  456 (788)
T ss_pred             hccCCCeEECCCCC
Confidence            88899999998864

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=1.4e-11  Score=107.31  Aligned_cols=208  Identities=16%  Similarity=0.172  Sum_probs=140.6

Q ss_pred             CCCCCcEEecCCCcCCCCCch-hhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhh
Q 035891            3 YLVNLKCLNLEYTYRIYKIPG-QVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAAL   81 (309)
Q Consensus         3 ~L~~Lr~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l   81 (309)
                      ++.+||...|+++ .+...+. +....|++++.|+++.|-+..|          ..+.+-+++|++|+.|+++.+.....
T Consensus       119 n~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw----------~~v~~i~eqLp~Le~LNls~Nrl~~~  187 (505)
T KOG3207|consen  119 NLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNW----------FPVLKIAEQLPSLENLNLSSNRLSNF  187 (505)
T ss_pred             hHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhH----------HHHHHHHHhcccchhcccccccccCC
Confidence            6788999999998 8888774 3478899999999999988766          66777888999999999987655433


Q ss_pred             hhhcCCcCccccCCCcCeEEEecCCCCCeeccc-CccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceE
Q 035891           82 HRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVF-TLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKV  160 (309)
Q Consensus        82 ~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L  160 (309)
                      .+-.....    +++|+.|.+++|.-- .-... .+..+|+|+.|.+...+.+ -+......          .+..|+.|
T Consensus       188 ~~s~~~~~----l~~lK~L~l~~CGls-~k~V~~~~~~fPsl~~L~L~~N~~~-~~~~~~~~----------i~~~L~~L  251 (505)
T KOG3207|consen  188 ISSNTTLL----LSHLKQLVLNSCGLS-WKDVQWILLTFPSLEVLYLEANEII-LIKATSTK----------ILQTLQEL  251 (505)
T ss_pred             ccccchhh----hhhhheEEeccCCCC-HHHHHHHHHhCCcHHHhhhhccccc-ceecchhh----------hhhHHhhc
Confidence            22111111    447999999998643 22112 3467899999999984321 12211221          68899999


Q ss_pred             EEeCceeccc---CccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCC--Ccc
Q 035891          161 SIWGSKLRHV---TWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYP--KAL  235 (309)
Q Consensus       161 ~l~~c~l~~l---~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~--~~~  235 (309)
                      +|+++++.++   +..+.+|.|+.|.++.|. +.++-.-      ..........||+|++|.+... .+..|+.  ...
T Consensus       252 dLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~------d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~  323 (505)
T KOG3207|consen  252 DLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEP------DVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLR  323 (505)
T ss_pred             cccCCcccccccccccccccchhhhhccccC-cchhcCC------CccchhhhcccccceeeecccC-ccccccccchhh
Confidence            9999955444   357889999999998874 4443210      0100023577999999999984 5666654  222


Q ss_pred             CCCCccEEee
Q 035891          236 PFPHLKELEV  245 (309)
Q Consensus       236 ~~~~L~~L~i  245 (309)
                      .+++|+.|.+
T Consensus       324 ~l~nlk~l~~  333 (505)
T KOG3207|consen  324 TLENLKHLRI  333 (505)
T ss_pred             ccchhhhhhc
Confidence            4555555543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.07  E-value=1.4e-09  Score=104.62  Aligned_cols=30  Identities=23%  Similarity=0.337  Sum_probs=15.5

Q ss_pred             cCcceEEEeCceecccCccCCCCCccEEEEEc
Q 035891          155 FSLHKVSIWGSKLRHVTWLILAPNLKHIEVYN  186 (309)
Q Consensus       155 ~~L~~L~l~~c~l~~l~~l~~l~~L~~L~l~~  186 (309)
                      .+|+.|++++|+++.+|..  .++|+.|++++
T Consensus       342 ~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~Ls~  371 (788)
T PRK15387        342 SGLQELSVSDNQLASLPTL--PSELYKLWAYN  371 (788)
T ss_pred             cccceEecCCCccCCCCCC--Ccccceehhhc
Confidence            3566666666655555421  23455555544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=3.8e-12  Score=105.97  Aligned_cols=179  Identities=21%  Similarity=0.244  Sum_probs=126.6

Q ss_pred             CCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecch--hhhhhcCCcCccccCCCcCeEEEecCCCC
Q 035891           31 MLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFA--ALHRLLTSPSLQSIFSNTPSLCLRNCHSL  108 (309)
Q Consensus        31 ~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~--~l~~~~~~~~l~~~l~~L~~L~l~~~~~l  108 (309)
                      .||+||++...++.           .....-+.++++|+.+.+.+....  ....+++..       +|+.++++.|+++
T Consensus       186 Rlq~lDLS~s~it~-----------stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~-------~L~~lnlsm~sG~  247 (419)
T KOG2120|consen  186 RLQHLDLSNSVITV-----------STLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNS-------NLVRLNLSMCSGF  247 (419)
T ss_pred             hhHHhhcchhheeH-----------HHHHHHHHHHHhhhhccccccccCcHHHHHHhccc-------cceeecccccccc
Confidence            37888887777651           334455777888888888765443  233444433       6999999999998


Q ss_pred             Ceeccc-CccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCc--eec--ccCc-cCCCCCccEE
Q 035891          109 SSLSVF-TLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGS--KLR--HVTW-LILAPNLKHI  182 (309)
Q Consensus       109 ~~~~~~-~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c--~l~--~l~~-l~~l~~L~~L  182 (309)
                      +..... -+.+++.|..|+++||...++.......         |.-++|..|+++||  ++.  ++.. ...+|+|.+|
T Consensus       248 t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~---------hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L  318 (419)
T KOG2120|consen  248 TENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVA---------HISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL  318 (419)
T ss_pred             chhHHHHHHHhhhhHhhcCchHhhccchhhhHHHh---------hhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee
Confidence            887544 4578899999999999665544322221         14579999999999  432  2222 3468999999


Q ss_pred             EEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccc-cCCCccCCCCccEEeecCc
Q 035891          183 EVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRS-IYPKALPFPHLKELEVNLC  248 (309)
Q Consensus       183 ~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~-l~~~~~~~~~L~~L~i~~C  248 (309)
                      ++++|..++.-..            ..+..|+.|++|.++.|..+-. .-.+....|+|.+|++.+|
T Consensus       319 DLSD~v~l~~~~~------------~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  319 DLSDSVMLKNDCF------------QEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             ccccccccCchHH------------HHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence            9999988876432            4678899999999999965521 1123448899999999887

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.01  E-value=2.8e-12  Score=98.62  Aligned_cols=159  Identities=21%  Similarity=0.234  Sum_probs=114.4

Q ss_pred             CCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhh
Q 035891            3 YLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALH   82 (309)
Q Consensus         3 ~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~   82 (309)
                      ++.+...|-++.| +++.+|.. |..|.+|++|++.+|.+             +.++..+..+++|+.|++.-+....++
T Consensus        31 ~~s~ITrLtLSHN-Kl~~vppn-ia~l~nlevln~~nnqi-------------e~lp~~issl~klr~lnvgmnrl~~lp   95 (264)
T KOG0617|consen   31 NMSNITRLTLSHN-KLTVVPPN-IAELKNLEVLNLSNNQI-------------EELPTSISSLPKLRILNVGMNRLNILP   95 (264)
T ss_pred             chhhhhhhhcccC-ceeecCCc-HHHhhhhhhhhcccchh-------------hhcChhhhhchhhhheecchhhhhcCc
Confidence            3456777889998 89999988 89999999999999998             577788888999999888644443333


Q ss_pred             hhcCCcCccccCCCcCeEEEecCCCCC-eecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEE
Q 035891           83 RLLTSPSLQSIFSNTPSLCLRNCHSLS-SLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVS  161 (309)
Q Consensus        83 ~~~~~~~l~~~l~~L~~L~l~~~~~l~-~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~  161 (309)
                      .-     +.+ ++.|+.|+++..+--+ ++| ..+-.|..|+.|.+++ +..+.++.+..           .+.+|+.|.
T Consensus        96 rg-----fgs-~p~levldltynnl~e~~lp-gnff~m~tlralyl~d-ndfe~lp~dvg-----------~lt~lqil~  156 (264)
T KOG0617|consen   96 RG-----FGS-FPALEVLDLTYNNLNENSLP-GNFFYMTTLRALYLGD-NDFEILPPDVG-----------KLTNLQILS  156 (264)
T ss_pred             cc-----cCC-CchhhhhhccccccccccCC-cchhHHHHHHHHHhcC-CCcccCChhhh-----------hhcceeEEe
Confidence            22     111 4468888888754322 233 3455667788888887 67777777665           688888888


Q ss_pred             EeCceecccC-ccCCCCCccEEEEEcCccccccccc
Q 035891          162 IWGSKLRHVT-WLILAPNLKHIEVYNCRYLDEIISL  196 (309)
Q Consensus       162 l~~c~l~~l~-~l~~l~~L~~L~l~~c~~l~~~~~~  196 (309)
                      +..+.+-.+| .++.++.|++|.|.++ .++.++++
T Consensus       157 lrdndll~lpkeig~lt~lrelhiqgn-rl~vlppe  191 (264)
T KOG0617|consen  157 LRDNDLLSLPKEIGDLTRLRELHIQGN-RLTVLPPE  191 (264)
T ss_pred             eccCchhhCcHHHHHHHHHHHHhcccc-eeeecChh
Confidence            8888666666 5677888888888775 45556543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.97  E-value=2.4e-11  Score=114.64  Aligned_cols=189  Identities=21%  Similarity=0.264  Sum_probs=132.2

Q ss_pred             CCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCcc------cc--CCcccchhh-----hhccCCCc
Q 035891            3 YLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSI------LF--GGSLVLVEE-----LLGLERLN   69 (309)
Q Consensus         3 ~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~------l~--~~~~~~~~~-----l~~L~~L~   69 (309)
                      ..++|++|+...| .++.+|.. .+.+++|++|++..|.+..+|..+.      +.  ....--.+.     =..+..|+
T Consensus       285 ~~~~L~~l~~~~n-el~yip~~-le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq  362 (1081)
T KOG0618|consen  285 RITSLVSLSAAYN-ELEYIPPF-LEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQ  362 (1081)
T ss_pred             hhhhHHHHHhhhh-hhhhCCCc-ccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHH
Confidence            4567888899998 88999885 7779999999999999877665321      00  000000000     00122244


Q ss_pred             eEEEEEecch--hhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCccccc
Q 035891           70 VLTITLQSFA--ALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKR  147 (309)
Q Consensus        70 ~L~l~~~~~~--~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~  147 (309)
                      .|.+.++..+  .++-+..       +.+|+.|++++ +.+..+|...+.+++.|+.|++++ +.++.++.+..      
T Consensus       363 ~LylanN~Ltd~c~p~l~~-------~~hLKVLhLsy-NrL~~fpas~~~kle~LeeL~LSG-NkL~~Lp~tva------  427 (1081)
T KOG0618|consen  363 ELYLANNHLTDSCFPVLVN-------FKHLKVLHLSY-NRLNSFPASKLRKLEELEELNLSG-NKLTTLPDTVA------  427 (1081)
T ss_pred             HHHHhcCcccccchhhhcc-------ccceeeeeecc-cccccCCHHHHhchHHhHHHhccc-chhhhhhHHHH------
Confidence            4444433322  1222222       44799999999 678889877888999999999999 89999995544      


Q ss_pred             CCCcccccCcceEEEeCceecccCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeecccccc
Q 035891          148 IRETHGFFSLHKVSIWGSKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGN  226 (309)
Q Consensus       148 ~~~~~~~~~L~~L~l~~c~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~  226 (309)
                           .++.|++|...+|++..+|.+..++.|+.++++ |++++.+..            .....-|+|++|+++|.+.
T Consensus       428 -----~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS-~N~L~~~~l------------~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  428 -----NLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLS-CNNLSEVTL------------PEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             -----hhhhhHHHhhcCCceeechhhhhcCcceEEecc-cchhhhhhh------------hhhCCCcccceeeccCCcc
Confidence                 799999999988888888888899999999995 556766642            1111228999999999754

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.95  E-value=5.4e-11  Score=102.62  Aligned_cols=61  Identities=23%  Similarity=0.289  Sum_probs=45.8

Q ss_pred             cEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEE-ecchhh
Q 035891            8 KCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITL-QSFAAL   81 (309)
Q Consensus         8 r~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~-~~~~~l   81 (309)
                      ..++|..| .|+.||+++|+.+++|+.||+++|.+.            ...+..+..+.+|..|-+.. +.++.+
T Consensus        70 veirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N~Is------------~I~p~AF~GL~~l~~Lvlyg~NkI~~l  131 (498)
T KOG4237|consen   70 VEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKNNIS------------FIAPDAFKGLASLLSLVLYGNNKITDL  131 (498)
T ss_pred             eEEEeccC-CcccCChhhccchhhhceecccccchh------------hcChHhhhhhHhhhHHHhhcCCchhhh
Confidence            35788888 999999999999999999999999997            45555666666666665544 333433

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.90  E-value=2.4e-11  Score=93.55  Aligned_cols=165  Identities=18%  Similarity=0.268  Sum_probs=124.8

Q ss_pred             CCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhcCCcCccccCCCcC
Q 035891           19 YKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLLTSPSLQSIFSNTP   98 (309)
Q Consensus        19 ~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~~~~~l~~~l~~L~   98 (309)
                      ..+|.  +..+.+...|.+++|+++             .++..++.+.+|+.|++.++....++.-..  .    ++.|+
T Consensus        24 ~~~~g--Lf~~s~ITrLtLSHNKl~-------------~vppnia~l~nlevln~~nnqie~lp~~is--s----l~klr   82 (264)
T KOG0617|consen   24 EELPG--LFNMSNITRLTLSHNKLT-------------VVPPNIAELKNLEVLNLSNNQIEELPTSIS--S----LPKLR   82 (264)
T ss_pred             hhccc--ccchhhhhhhhcccCcee-------------ecCCcHHHhhhhhhhhcccchhhhcChhhh--h----chhhh
Confidence            34554  556777788889999984             677788999999999998877766654322  2    33588


Q ss_pred             eEEEecCCCCCeecccCccccccCCEEEEecCCCCc--eEEcCccCcccccCCCcccccCcceEEEeCceecccC-ccCC
Q 035891           99 SLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLE--EMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVT-WLIL  175 (309)
Q Consensus        99 ~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~--~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l~-~l~~  175 (309)
                      .|++.- +.+..+| ..++.++.|+.|++.+ +++.  +++..++           .+..|+-|+++++.++-+| .++.
T Consensus        83 ~lnvgm-nrl~~lp-rgfgs~p~levldlty-nnl~e~~lpgnff-----------~m~tlralyl~dndfe~lp~dvg~  148 (264)
T KOG0617|consen   83 ILNVGM-NRLNILP-RGFGSFPALEVLDLTY-NNLNENSLPGNFF-----------YMTTLRALYLGDNDFEILPPDVGK  148 (264)
T ss_pred             heecch-hhhhcCc-cccCCCchhhhhhccc-cccccccCCcchh-----------HHHHHHHHHhcCCCcccCChhhhh
Confidence            888875 5566665 6788999999999998 4543  3454444           5788999999999777776 6889


Q ss_pred             CCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCC
Q 035891          176 APNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPK  233 (309)
Q Consensus       176 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~  233 (309)
                      +++|+.|.+.++..+ +++             ..++.+.+|+.|.+.+ +.++-+|.+
T Consensus       149 lt~lqil~lrdndll-~lp-------------keig~lt~lrelhiqg-nrl~vlppe  191 (264)
T KOG0617|consen  149 LTNLQILSLRDNDLL-SLP-------------KEIGDLTRLRELHIQG-NRLTVLPPE  191 (264)
T ss_pred             hcceeEEeeccCchh-hCc-------------HHHHHHHHHHHHhccc-ceeeecChh
Confidence            999999999987544 343             5788999999999999 589888853

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.87  E-value=3.5e-10  Score=99.43  Aligned_cols=213  Identities=21%  Similarity=0.132  Sum_probs=114.4

Q ss_pred             CCCCCcEEecCCCcCCC-----CCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEec
Q 035891            3 YLVNLKCLNLEYTYRIY-----KIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQS   77 (309)
Q Consensus         3 ~L~~Lr~L~l~~~~~l~-----~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~   77 (309)
                      .+.+|++|+++++ .++     .++.. +...++|++|+++++.+...+...      ......+..+++|+.|+++.+.
T Consensus        21 ~l~~L~~l~l~~~-~l~~~~~~~i~~~-l~~~~~l~~l~l~~~~~~~~~~~~------~~~~~~l~~~~~L~~L~l~~~~   92 (319)
T cd00116          21 KLLCLQVLRLEGN-TLGEEAAKALASA-LRPQPSLKELCLSLNETGRIPRGL------QSLLQGLTKGCGLQELDLSDNA   92 (319)
T ss_pred             HHhhccEEeecCC-CCcHHHHHHHHHH-HhhCCCceEEeccccccCCcchHH------HHHHHHHHhcCceeEEEccCCC
Confidence            3556888888888 663     35554 667778888888877664111111      2344566778888888887655


Q ss_pred             chh--hhhhcCCcCccccCCCcCeEEEecCCCCCe-ec--ccCcccc-ccCCEEEEecCCCCceEEc----CccCccccc
Q 035891           78 FAA--LHRLLTSPSLQSIFSNTPSLCLRNCHSLSS-LS--VFTLASL-RHLEALDMTNCKDLEEMEI----DYAGEEVKR  147 (309)
Q Consensus        78 ~~~--l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~-~~--~~~l~~l-~~L~~L~l~~~~~l~~l~~----~~~~~~~~~  147 (309)
                      ...  ...+......    ++|++|++++|..... ..  ...+..+ ++|+.|++++|. +..-..    ....     
T Consensus        93 ~~~~~~~~~~~l~~~----~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~-----  162 (319)
T cd00116          93 LGPDGCGVLESLLRS----SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALR-----  162 (319)
T ss_pred             CChhHHHHHHHHhcc----CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHH-----
Confidence            431  1111111111    1588888888653211 10  0133455 778888888753 331110    0111     


Q ss_pred             CCCcccccCcceEEEeCceecc-----cC-ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeec
Q 035891          148 IRETHGFFSLHKVSIWGSKLRH-----VT-WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSL  221 (309)
Q Consensus       148 ~~~~~~~~~L~~L~l~~c~l~~-----l~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L  221 (309)
                           .+++|++|++++|.+..     ++ .+...++|++|++++|..........       .  ..+..+++|++|++
T Consensus       163 -----~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l-------~--~~~~~~~~L~~L~l  228 (319)
T cd00116         163 -----ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASAL-------A--ETLASLKSLEVLNL  228 (319)
T ss_pred             -----hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHH-------H--HHhcccCCCCEEec
Confidence                 34578888888774431     11 23344678888887774221110000       0  23445677888888


Q ss_pred             cccccccccCCCcc------CCCCccEEeecCc
Q 035891          222 YALGNLRSIYPKAL------PFPHLKELEVNLC  248 (309)
Q Consensus       222 ~~~~~L~~l~~~~~------~~~~L~~L~i~~C  248 (309)
                      ++| .++.......      ..+.|++|++.+|
T Consensus       229 s~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n  260 (319)
T cd00116         229 GDN-NLTDAGAAALASALLSPNISLLTLSLSCN  260 (319)
T ss_pred             CCC-cCchHHHHHHHHHHhccCCCceEEEccCC
Confidence            775 3442111100      2367778887777

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.78  E-value=6.4e-10  Score=97.80  Aligned_cols=161  Identities=16%  Similarity=0.100  Sum_probs=71.5

Q ss_pred             CCCCcEEecCCCcCCCC-------CchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhcc---CCCceEEE
Q 035891            4 LVNLKCLNLEYTYRIYK-------IPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGL---ERLNVLTI   73 (309)
Q Consensus         4 L~~Lr~L~l~~~~~l~~-------lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L---~~L~~L~l   73 (309)
                      .+.|++|+++++ .+..       ++.. +.++++|+.|++++|.+.            ......+..+   ++|+.|++
T Consensus        50 ~~~l~~l~l~~~-~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~------------~~~~~~~~~l~~~~~L~~L~l  115 (319)
T cd00116          50 QPSLKELCLSLN-ETGRIPRGLQSLLQG-LTKGCGLQELDLSDNALG------------PDGCGVLESLLRSSSLQELKL  115 (319)
T ss_pred             CCCceEEecccc-ccCCcchHHHHHHHH-HHhcCceeEEEccCCCCC------------hhHHHHHHHHhccCcccEEEe
Confidence            344666666665 4432       2222 555666777777666664            2222223333   33666666


Q ss_pred             EEecchh--hhhhcC-CcCccccCCCcCeEEEecCCCCCeec---ccCccccccCCEEEEecCCCCceEEcCccCccccc
Q 035891           74 TLQSFAA--LHRLLT-SPSLQSIFSNTPSLCLRNCHSLSSLS---VFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKR  147 (309)
Q Consensus        74 ~~~~~~~--l~~~~~-~~~l~~~l~~L~~L~l~~~~~l~~~~---~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~  147 (309)
                      +.+....  ...+.. ....   .++|+.|++++|.-.....   ...+..+++|+.|++.+| .+..-.......    
T Consensus       116 s~~~~~~~~~~~l~~~l~~~---~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~----  187 (319)
T cd00116         116 NNNGLGDRGLRLLAKGLKDL---PPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN-GIGDAGIRALAE----  187 (319)
T ss_pred             eCCccchHHHHHHHHHHHhC---CCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC-CCchHHHHHHHH----
Confidence            6544331  111110 0011   0256667766654321110   012344456666666663 333211000000    


Q ss_pred             CCCcccccCcceEEEeCceeccc-----C-ccCCCCCccEEEEEcCc
Q 035891          148 IRETHGFFSLHKVSIWGSKLRHV-----T-WLILAPNLKHIEVYNCR  188 (309)
Q Consensus       148 ~~~~~~~~~L~~L~l~~c~l~~l-----~-~l~~l~~L~~L~l~~c~  188 (309)
                        ....+++|+.|++++|.+...     . .+..+++|++|++++|.
T Consensus       188 --~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~  232 (319)
T cd00116         188 --GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN  232 (319)
T ss_pred             --HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence              000234667777766633211     1 23445667777776653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.77  E-value=2.2e-10  Score=98.92  Aligned_cols=226  Identities=16%  Similarity=0.182  Sum_probs=126.0

Q ss_pred             CCCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecc-cCCCCccCCc----------cccCC--cccchhhhhccCC
Q 035891            1 LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFK-CGSSKQESDS----------ILFGG--SLVLVEELLGLER   67 (309)
Q Consensus         1 l~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~-~~~~~~~~~~----------~l~~~--~~~~~~~l~~L~~   67 (309)
                      |+.+++||.|||+.| .|+.|.++.|..|.+|-.|.+.+ |++..++.+.          .+...  .-...+.+..|++
T Consensus        87 F~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~  165 (498)
T KOG4237|consen   87 FKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPS  165 (498)
T ss_pred             ccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhh
Confidence            678999999999999 99999777899999988888877 8888776642          01110  1122344666777


Q ss_pred             CceEEEEEecchhhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCc-----------cccccCCEEEEecCCCCceE
Q 035891           68 LNVLTITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTL-----------ASLRHLEALDMTNCKDLEEM  136 (309)
Q Consensus        68 L~~L~l~~~~~~~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l-----------~~l~~L~~L~l~~~~~l~~l  136 (309)
                      |..|.+..+....+..-.    +++ +.+++.+.+........-.++.+           +.+.......+.. ..+..+
T Consensus       166 l~lLslyDn~~q~i~~~t----f~~-l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~-~Ri~q~  239 (498)
T KOG4237|consen  166 LSLLSLYDNKIQSICKGT----FQG-LAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYY-KRINQE  239 (498)
T ss_pred             cchhcccchhhhhhcccc----ccc-hhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHH-HHhccc
Confidence            777777655444333211    111 22456666554332111111100           0000000000000 000011


Q ss_pred             EcCccC----cc------cccCCC------cccccCcceEEEeCceecccC--ccCCCCCccEEEEEcCccccccccccc
Q 035891          137 EIDYAG----EE------VKRIRE------THGFFSLHKVSIWGSKLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEK  198 (309)
Q Consensus       137 ~~~~~~----~~------~~~~~~------~~~~~~L~~L~l~~c~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~  198 (309)
                      ...-+.    +.      ..++..      -+.+++|++|++++|+++.+.  ++..+..+++|.+..+ .++.+-.   
T Consensus       240 ~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N-~l~~v~~---  315 (498)
T KOG4237|consen  240 DARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRN-KLEFVSS---  315 (498)
T ss_pred             chhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcc-hHHHHHH---
Confidence            000000    00      000000      115678888888888776664  5677788888888765 4554432   


Q ss_pred             cCCcCcccccCCccCCccceeeccccccccccCCCcc-CCCCccEEeecC
Q 035891          199 LGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKAL-PFPHLKELEVNL  247 (309)
Q Consensus       199 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~-~~~~L~~L~i~~  247 (309)
                               ..+.++..|+.|.|.+ ++++.+..+.+ ...+|.+|.+-.
T Consensus       316 ---------~~f~~ls~L~tL~L~~-N~it~~~~~aF~~~~~l~~l~l~~  355 (498)
T KOG4237|consen  316 ---------GMFQGLSGLKTLSLYD-NQITTVAPGAFQTLFSLSTLNLLS  355 (498)
T ss_pred             ---------HhhhccccceeeeecC-CeeEEEecccccccceeeeeehcc
Confidence                     3467788888999988 47887776665 667777777644

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=3.5e-09  Score=92.72  Aligned_cols=182  Identities=20%  Similarity=0.197  Sum_probs=122.6

Q ss_pred             cCCCCCceEEecccCCCCccCCccccCCcccch--hhhhccCCCceEEEEEecchhhhhhcCCcCccccCCCcCeEEEec
Q 035891           27 SNLKMLEALRMFKCGSSKQESDSILFGGSLVLV--EELLGLERLNVLTITLQSFAALHRLLTSPSLQSIFSNTPSLCLRN  104 (309)
Q Consensus        27 ~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~--~~l~~L~~L~~L~l~~~~~~~l~~~~~~~~l~~~l~~L~~L~l~~  104 (309)
                      +++.+|+...+.++...             ...  +..+.+++++.|+++.+-.......   ..+...+++|+.|+++.
T Consensus       118 sn~kkL~~IsLdn~~V~-------------~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v---~~i~eqLp~Le~LNls~  181 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVE-------------DAGIEEYSKILPNVRDLDLSRNLFHNWFPV---LKIAEQLPSLENLNLSS  181 (505)
T ss_pred             hhHHhhhheeecCcccc-------------ccchhhhhhhCCcceeecchhhhHHhHHHH---HHHHHhcccchhccccc
Confidence            67899999999988874             222  4678899999999976655433332   22333466899999998


Q ss_pred             CCCCCeeccc-CccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCc-ee-cccCccCCCCCccE
Q 035891          105 CHSLSSLSVF-TLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGS-KL-RHVTWLILAPNLKH  181 (309)
Q Consensus       105 ~~~l~~~~~~-~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c-~l-~~l~~l~~l~~L~~  181 (309)
                      + .+..+... .-..+++|+.|.+.+|. +..-...+...         .||+|+.|++..| .+ .......-+..|+.
T Consensus       182 N-rl~~~~~s~~~~~l~~lK~L~l~~CG-ls~k~V~~~~~---------~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~  250 (505)
T KOG3207|consen  182 N-RLSNFISSNTTLLLSHLKQLVLNSCG-LSWKDVQWILL---------TFPSLEVLYLEANEIILIKATSTKILQTLQE  250 (505)
T ss_pred             c-cccCCccccchhhhhhhheEEeccCC-CCHHHHHHHHH---------hCCcHHHhhhhcccccceecchhhhhhHHhh
Confidence            4 33433212 12356789999999984 33211122211         6999999999988 22 11112344678999


Q ss_pred             EEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCC---Cc----cCCCCccEEeecCc
Q 035891          182 IEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYP---KA----LPFPHLKELEVNLC  248 (309)
Q Consensus       182 L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~---~~----~~~~~L~~L~i~~C  248 (309)
                      |+|+++..+..-..            ...+.||.|+.|.++.| .+.++..   +.    ..||+|++|.+...
T Consensus       251 LdLs~N~li~~~~~------------~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N  311 (505)
T KOG3207|consen  251 LDLSNNNLIDFDQG------------YKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISEN  311 (505)
T ss_pred             ccccCCcccccccc------------cccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccC
Confidence            99999876654422            45788999999999986 5665543   21    27999999998774

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.59  E-value=1.1e-08  Score=81.20  Aligned_cols=79  Identities=19%  Similarity=0.280  Sum_probs=24.9

Q ss_pred             CcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCceeccc---Cc
Q 035891           96 NTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHV---TW  172 (309)
Q Consensus        96 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l---~~  172 (309)
                      +|+.|++++ +.++.+  ..++.+++|+.|++++ +.+.++......          .+|+|+.|++++|++.++   ..
T Consensus        43 ~L~~L~Ls~-N~I~~l--~~l~~L~~L~~L~L~~-N~I~~i~~~l~~----------~lp~L~~L~L~~N~I~~l~~l~~  108 (175)
T PF14580_consen   43 KLEVLDLSN-NQITKL--EGLPGLPRLKTLDLSN-NRISSISEGLDK----------NLPNLQELYLSNNKISDLNELEP  108 (175)
T ss_dssp             T--EEE-TT-S--S----TT----TT--EEE--S-S---S-CHHHHH----------H-TT--EEE-TTS---SCCCCGG
T ss_pred             CCCEEECCC-CCCccc--cCccChhhhhhcccCC-CCCCccccchHH----------hCCcCCEEECcCCcCCChHHhHH
Confidence            355555555 233333  2345556666666666 555555322211          356677777766633332   24


Q ss_pred             cCCCCCccEEEEEcCc
Q 035891          173 LILAPNLKHIEVYNCR  188 (309)
Q Consensus       173 l~~l~~L~~L~l~~c~  188 (309)
                      +..+|+|++|++.+++
T Consensus       109 L~~l~~L~~L~L~~NP  124 (175)
T PF14580_consen  109 LSSLPKLRVLSLEGNP  124 (175)
T ss_dssp             GGG-TT--EEE-TT-G
T ss_pred             HHcCCCcceeeccCCc
Confidence            5556667777766654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.58  E-value=9.4e-09  Score=81.53  Aligned_cols=78  Identities=22%  Similarity=0.297  Sum_probs=25.4

Q ss_pred             CcCeEEEecCCCCCeecccCc-cccccCCEEEEecCCCCceEEc-CccCcccccCCCcccccCcceEEEeCceecccC--
Q 035891           96 NTPSLCLRNCHSLSSLSVFTL-ASLRHLEALDMTNCKDLEEMEI-DYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVT--  171 (309)
Q Consensus        96 ~L~~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l~--  171 (309)
                      +|+.|++++ +.++++. ..+ ..+++|+.|++.+ +.+.++.. ....          .+++|+.|++.+|-+..-+  
T Consensus        65 ~L~~L~L~~-N~I~~i~-~~l~~~lp~L~~L~L~~-N~I~~l~~l~~L~----------~l~~L~~L~L~~NPv~~~~~Y  131 (175)
T PF14580_consen   65 RLKTLDLSN-NRISSIS-EGLDKNLPNLQELYLSN-NKISDLNELEPLS----------SLPKLRVLSLEGNPVCEKKNY  131 (175)
T ss_dssp             T--EEE--S-S---S-C-HHHHHH-TT--EEE-TT-S---SCCCCGGGG----------G-TT--EEE-TT-GGGGSTTH
T ss_pred             hhhhcccCC-CCCCccc-cchHHhCCcCCEEECcC-CcCCChHHhHHHH----------cCCCcceeeccCCcccchhhH
Confidence            355555554 2333332 112 2355566666554 44444322 1111          5666777777666222211  


Q ss_pred             ---ccCCCCCccEEEEEc
Q 035891          172 ---WLILAPNLKHIEVYN  186 (309)
Q Consensus       172 ---~l~~l~~L~~L~l~~  186 (309)
                         .+..+|+|+.|+-..
T Consensus       132 R~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen  132 RLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             HHHHHHH-TT-SEETTEE
T ss_pred             HHHHHHHcChhheeCCEE
Confidence               245667777776544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.54  E-value=1.1e-08  Score=85.80  Aligned_cols=38  Identities=13%  Similarity=0.214  Sum_probs=21.8

Q ss_pred             CCCcEEecCCCc------CCC--CCchhhhcCCCCCceEEecccCCC
Q 035891            5 VNLKCLNLEYTY------RIY--KIPGQVISNLKMLEALRMFKCGSS   43 (309)
Q Consensus         5 ~~Lr~L~l~~~~------~l~--~lp~~~i~~L~~L~~L~l~~~~~~   43 (309)
                      ..|.+|.++++.      ++.  .+|-+ +.-.++|.++.++.|.-.
T Consensus       182 ~~l~~l~vs~~~~p~~~sni~~~~l~f~-l~~f~~l~~~~~s~~~~~  227 (490)
T KOG1259|consen  182 TQLVALVVTPVKDPIDRSNIIPNRLSFN-LNAFRNLKTLKFSALSTE  227 (490)
T ss_pred             hheeEEEecCCCCCCccccccccccccc-hHHhhhhheeeeeccchh
Confidence            456677776551      111  13444 455677888888777653

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.46  E-value=8.2e-08  Score=62.59  Aligned_cols=59  Identities=25%  Similarity=0.359  Sum_probs=50.8

Q ss_pred             CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEe
Q 035891            5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQ   76 (309)
Q Consensus         5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~   76 (309)
                      ++|++|++++| .++.+|.+++..+++|++|++++|.+.            ...++.+..+++|+.|+++++
T Consensus         1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~------------~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLT------------SIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSES------------EEETTTTTTSTTESEEEETSS
T ss_pred             CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccC------------ccCHHHHcCCCCCCEEeCcCC
Confidence            47899999999 999999888999999999999999996            444566888999999988643

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=1.3e-09  Score=91.05  Aligned_cols=177  Identities=19%  Similarity=0.212  Sum_probs=125.4

Q ss_pred             CCcEEecCCCcCCCC--CchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecch---h
Q 035891            6 NLKCLNLEYTYRIYK--IPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFA---A   80 (309)
Q Consensus         6 ~Lr~L~l~~~~~l~~--lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~---~   80 (309)
                      .|++||++.+ .++.  +.. +++.+.+|+-|.+.+.+..            +.+...++.-.+|+.++++...+-   .
T Consensus       186 Rlq~lDLS~s-~it~stl~~-iLs~C~kLk~lSlEg~~Ld------------D~I~~~iAkN~~L~~lnlsm~sG~t~n~  251 (419)
T KOG2120|consen  186 RLQHLDLSNS-VITVSTLHG-ILSQCSKLKNLSLEGLRLD------------DPIVNTIAKNSNLVRLNLSMCSGFTENA  251 (419)
T ss_pred             hhHHhhcchh-heeHHHHHH-HHHHHHhhhhccccccccC------------cHHHHHHhccccceeeccccccccchhH
Confidence            4889999988 7663  443 5788999999999999986            778888999999999999754432   2


Q ss_pred             hhhhcCCcCccccCCCcCeEEEecCCCCCeec---ccCccccccCCEEEEecCCC-CceEEcCccCcccccCCCcccccC
Q 035891           81 LHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLS---VFTLASLRHLEALDMTNCKD-LEEMEIDYAGEEVKRIRETHGFFS  156 (309)
Q Consensus        81 l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~---~~~l~~l~~L~~L~l~~~~~-l~~l~~~~~~~~~~~~~~~~~~~~  156 (309)
                      +.-+..  +    ++.|..|+++-|...+...   ..+++  ++|+.|++++|.. +..-.......         .+|+
T Consensus       252 ~~ll~~--s----cs~L~~LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rrnl~~sh~~tL~~---------rcp~  314 (419)
T KOG2120|consen  252 LQLLLS--S----CSRLDELNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRRNLQKSHLSTLVR---------RCPN  314 (419)
T ss_pred             HHHHHH--h----hhhHhhcCchHhhccchhhhHHHhhhc--hhhhhhhhhhhHhhhhhhHHHHHHH---------hCCc
Confidence            222222  1    4479999999887655431   12333  4899999998743 11111112111         6899


Q ss_pred             cceEEEeCc-eecc--cCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccc
Q 035891          157 LHKVSIWGS-KLRH--VTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALG  225 (309)
Q Consensus       157 L~~L~l~~c-~l~~--l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~  225 (309)
                      |.+|++++| .++.  +..+..++.|++|.++.|+.+..-.            ...+...|.|.+|++.+|-
T Consensus       315 l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~------------~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  315 LVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPET------------LLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             eeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHH------------eeeeccCcceEEEEecccc
Confidence            999999999 6655  1135678999999999998663221            1467889999999999984

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.43  E-value=1.9e-07  Score=84.80  Aligned_cols=172  Identities=26%  Similarity=0.327  Sum_probs=103.6

Q ss_pred             CCCCCcEEecCCCcCCCCCchhhhcCCC-CCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhh
Q 035891            3 YLVNLKCLNLEYTYRIYKIPGQVISNLK-MLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAAL   81 (309)
Q Consensus         3 ~L~~Lr~L~l~~~~~l~~lp~~~i~~L~-~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l   81 (309)
                      .+..++.|++.++ .+..+|.. ++.+. +|+.|+++++.+             ..++..++.+++|+.|++..+....+
T Consensus       114 ~~~~l~~L~l~~n-~i~~i~~~-~~~~~~nL~~L~l~~N~i-------------~~l~~~~~~l~~L~~L~l~~N~l~~l  178 (394)
T COG4886         114 ELTNLTSLDLDNN-NITDIPPL-IGLLKSNLKELDLSDNKI-------------ESLPSPLRNLPNLKNLDLSFNDLSDL  178 (394)
T ss_pred             cccceeEEecCCc-ccccCccc-cccchhhcccccccccch-------------hhhhhhhhccccccccccCCchhhhh
Confidence            3456777888887 77888775 56664 788888888777             34446777888888888876666665


Q ss_pred             hhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEE
Q 035891           82 HRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVS  161 (309)
Q Consensus        82 ~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~  161 (309)
                      +....  .    +++|+.|++++ +.+..++ ........|+++.+.+. ..........           .+.++..+.
T Consensus       179 ~~~~~--~----~~~L~~L~ls~-N~i~~l~-~~~~~~~~L~~l~~~~N-~~~~~~~~~~-----------~~~~l~~l~  238 (394)
T COG4886         179 PKLLS--N----LSNLNNLDLSG-NKISDLP-PEIELLSALEELDLSNN-SIIELLSSLS-----------NLKNLSGLE  238 (394)
T ss_pred             hhhhh--h----hhhhhheeccC-CccccCc-hhhhhhhhhhhhhhcCC-cceecchhhh-----------hcccccccc
Confidence            55431  1    22577788777 4455554 22233345777777763 2222222221           455666666


Q ss_pred             EeCceeccc-CccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeecccc
Q 035891          162 IWGSKLRHV-TWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYAL  224 (309)
Q Consensus       162 l~~c~l~~l-~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~  224 (309)
                      +.++++..+ ..++.+++++.|+++++ .+.++.              ..+.+.+++.|++.+.
T Consensus       239 l~~n~~~~~~~~~~~l~~l~~L~~s~n-~i~~i~--------------~~~~~~~l~~L~~s~n  287 (394)
T COG4886         239 LSNNKLEDLPESIGNLSNLETLDLSNN-QISSIS--------------SLGSLTNLRELDLSGN  287 (394)
T ss_pred             cCCceeeeccchhccccccceeccccc-cccccc--------------cccccCccCEEeccCc
Confidence            555544442 24566667777777654 455553              3556667777777663

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.33  E-value=5.2e-08  Score=81.81  Aligned_cols=105  Identities=24%  Similarity=0.265  Sum_probs=67.4

Q ss_pred             CCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhc
Q 035891            6 NLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLL   85 (309)
Q Consensus         6 ~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~   85 (309)
                      .|+.+|+++| .++.|.++ +.-++.++.|++++|++.              ..+.++.|.+|+.|+++++....+..|-
T Consensus       285 ~LtelDLS~N-~I~~iDES-vKL~Pkir~L~lS~N~i~--------------~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh  348 (490)
T KOG1259|consen  285 ELTELDLSGN-LITQIDES-VKLAPKLRRLILSQNRIR--------------TVQNLAELPQLQLLDLSGNLLAECVGWH  348 (490)
T ss_pred             hhhhcccccc-chhhhhhh-hhhccceeEEecccccee--------------eehhhhhcccceEeecccchhHhhhhhH
Confidence            4677888888 78888877 777788888888888875              2355777888888888766555555443


Q ss_pred             CCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceE
Q 035891           86 TSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEM  136 (309)
Q Consensus        86 ~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l  136 (309)
                      .  ++.    |++.|.+.+ +.++++  ..+..+-+|..|++.+ ++++.+
T Consensus       349 ~--KLG----NIKtL~La~-N~iE~L--SGL~KLYSLvnLDl~~-N~Ie~l  389 (490)
T KOG1259|consen  349 L--KLG----NIKTLKLAQ-NKIETL--SGLRKLYSLVNLDLSS-NQIEEL  389 (490)
T ss_pred             h--hhc----CEeeeehhh-hhHhhh--hhhHhhhhheeccccc-cchhhH
Confidence            3  222    577777766 333433  3344555555666655 444444

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.27  E-value=3.2e-08  Score=86.34  Aligned_cols=38  Identities=21%  Similarity=0.253  Sum_probs=19.8

Q ss_pred             CCCCcEEecCCCcCCCCCchh-hhcCCCCCceEEecccC
Q 035891            4 LVNLKCLNLEYTYRIYKIPGQ-VISNLKMLEALRMFKCG   41 (309)
Q Consensus         4 L~~Lr~L~l~~~~~l~~lp~~-~i~~L~~L~~L~l~~~~   41 (309)
                      ..+|++|++..|..++...-. ....+++|.+|+++.|.
T Consensus       189 C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~  227 (483)
T KOG4341|consen  189 CRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCP  227 (483)
T ss_pred             cchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCc
Confidence            345666666665444432221 23456666666666554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.26  E-value=5e-07  Score=82.03  Aligned_cols=151  Identities=24%  Similarity=0.317  Sum_probs=113.3

Q ss_pred             CCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhc
Q 035891            6 NLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLL   85 (309)
Q Consensus         6 ~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~   85 (309)
                      +|+.|+++++ .+..+|.. ++.+++|+.|++++|.+.             .++.....+++|+.|+++++....++...
T Consensus       141 nL~~L~l~~N-~i~~l~~~-~~~l~~L~~L~l~~N~l~-------------~l~~~~~~~~~L~~L~ls~N~i~~l~~~~  205 (394)
T COG4886         141 NLKELDLSDN-KIESLPSP-LRNLPNLKNLDLSFNDLS-------------DLPKLLSNLSNLNNLDLSGNKISDLPPEI  205 (394)
T ss_pred             hccccccccc-chhhhhhh-hhccccccccccCCchhh-------------hhhhhhhhhhhhhheeccCCccccCchhh
Confidence            8999999999 99999866 899999999999999994             45555558899999999888777776643


Q ss_pred             CCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCc
Q 035891           86 TSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGS  165 (309)
Q Consensus        86 ~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c  165 (309)
                      ....      +|+.+.+.+.......  ..+..+.++..+.+.. +.+..++ ...+          .+++++.|++++|
T Consensus       206 ~~~~------~L~~l~~~~N~~~~~~--~~~~~~~~l~~l~l~~-n~~~~~~-~~~~----------~l~~l~~L~~s~n  265 (394)
T COG4886         206 ELLS------ALEELDLSNNSIIELL--SSLSNLKNLSGLELSN-NKLEDLP-ESIG----------NLSNLETLDLSNN  265 (394)
T ss_pred             hhhh------hhhhhhhcCCcceecc--hhhhhcccccccccCC-ceeeecc-chhc----------cccccceeccccc
Confidence            2111      5889999885433333  3456667777777554 4444432 2222          6788999999999


Q ss_pred             eecccCccCCCCCccEEEEEcCcccc
Q 035891          166 KLRHVTWLILAPNLKHIEVYNCRYLD  191 (309)
Q Consensus       166 ~l~~l~~l~~l~~L~~L~l~~c~~l~  191 (309)
                      .+..++.++.+.+++.|++++.....
T Consensus       266 ~i~~i~~~~~~~~l~~L~~s~n~~~~  291 (394)
T COG4886         266 QISSISSLGSLTNLRELDLSGNSLSN  291 (394)
T ss_pred             cccccccccccCccCEEeccCccccc
Confidence            88888778888999999998865443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.22  E-value=1.7e-06  Score=51.99  Aligned_cols=38  Identities=34%  Similarity=0.433  Sum_probs=33.1

Q ss_pred             CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCC
Q 035891            5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSK   44 (309)
Q Consensus         5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~   44 (309)
                      ++||+|++++| .++.+|.. +++|++|++|++++|.+..
T Consensus         1 ~~L~~L~l~~N-~i~~l~~~-l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNN-QITDLPPE-LSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSS-S-SSHGGH-GTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCC-CCcccCch-HhCCCCCCEEEecCCCCCC
Confidence            47999999999 99999997 9999999999999999863

...

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.16  E-value=5.4e-08  Score=88.08  Aligned_cols=189  Identities=19%  Similarity=0.251  Sum_probs=131.3

Q ss_pred             cEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhcCC
Q 035891            8 KCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLLTS   87 (309)
Q Consensus         8 r~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~~~   87 (309)
                      ...|++.| .+..+|.. +..+..|+.+.++.|.+             ..++..+.++..|..++++.+....++.-.-.
T Consensus        78 ~~aDlsrN-R~~elp~~-~~~f~~Le~liLy~n~~-------------r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~  142 (722)
T KOG0532|consen   78 VFADLSRN-RFSELPEE-ACAFVSLESLILYHNCI-------------RTIPEAICNLEALTFLDLSSNQLSHLPDGLCD  142 (722)
T ss_pred             hhhhcccc-ccccCchH-HHHHHHHHHHHHHhccc-------------eecchhhhhhhHHHHhhhccchhhcCChhhhc
Confidence            34567777 77777776 67777777777777766             66778888999999999987777666654333


Q ss_pred             cCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCcee
Q 035891           88 PSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKL  167 (309)
Q Consensus        88 ~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l  167 (309)
                      .       -|+.|.+++ ++++.+| ..++....|..|+.+. +++..++....           .+.+|+.|.+..+.+
T Consensus       143 l-------pLkvli~sN-Nkl~~lp-~~ig~~~tl~~ld~s~-nei~slpsql~-----------~l~slr~l~vrRn~l  201 (722)
T KOG0532|consen  143 L-------PLKVLIVSN-NKLTSLP-EEIGLLPTLAHLDVSK-NEIQSLPSQLG-----------YLTSLRDLNVRRNHL  201 (722)
T ss_pred             C-------cceeEEEec-CccccCC-cccccchhHHHhhhhh-hhhhhchHHhh-----------hHHHHHHHHHhhhhh
Confidence            3       277888887 5677777 4456777888888887 57888876665           678888888888877


Q ss_pred             cccC-ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCc---cCCCCccEE
Q 035891          168 RHVT-WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKA---LPFPHLKEL  243 (309)
Q Consensus       168 ~~l~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~---~~~~~L~~L  243 (309)
                      .++| .+..+ .|..|+++ |+.+..++             ..+..|..|++|.|.+.| |++=|...   +-..=.++|
T Consensus       202 ~~lp~El~~L-pLi~lDfS-cNkis~iP-------------v~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL  265 (722)
T KOG0532|consen  202 EDLPEELCSL-PLIRLDFS-CNKISYLP-------------VDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYL  265 (722)
T ss_pred             hhCCHHHhCC-ceeeeecc-cCceeecc-------------hhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeee
Confidence            7776 23333 46777874 56777776             577888888888888754 55433321   122334667


Q ss_pred             eecCc
Q 035891          244 EVNLC  248 (309)
Q Consensus       244 ~i~~C  248 (309)
                      ++.-|
T Consensus       266 ~~qA~  270 (722)
T KOG0532|consen  266 STQAC  270 (722)
T ss_pred             cchhc
Confidence            77777

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.11  E-value=7e-06  Score=53.34  Aligned_cols=58  Identities=26%  Similarity=0.349  Sum_probs=31.5

Q ss_pred             CcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCc
Q 035891           96 NTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGS  165 (309)
Q Consensus        96 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c  165 (309)
                      +|+.|+++++ .++.++...+..+++|+.|++++ +.++.++...+.          .+++|++|++++|
T Consensus         2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~----------~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFS----------NLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSS-TESEECTTTTTTGTTESEEEETS-SSESEEETTTTT----------TSTTESEEEETSS
T ss_pred             cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHc----------CCCCCCEEeCcCC
Confidence            4555666553 45555544555555666666654 455555554443          4555555555554

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.10  E-value=6.4e-06  Score=73.49  Aligned_cols=68  Identities=18%  Similarity=0.410  Sum_probs=52.8

Q ss_pred             CcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCc-eecccCccC
Q 035891           96 NTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGS-KLRHVTWLI  174 (309)
Q Consensus        96 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c-~l~~l~~l~  174 (309)
                      ++..|++++| .+..+|  .++  ++|+.|.+.+|++++.++..             .+++|++|.+++| ++..+|   
T Consensus        53 ~l~~L~Is~c-~L~sLP--~LP--~sLtsL~Lsnc~nLtsLP~~-------------LP~nLe~L~Ls~Cs~L~sLP---  111 (426)
T PRK15386         53 ASGRLYIKDC-DIESLP--VLP--NELTEITIENCNNLTTLPGS-------------IPEGLEKLTVCHCPEISGLP---  111 (426)
T ss_pred             CCCEEEeCCC-CCcccC--CCC--CCCcEEEccCCCCcccCCch-------------hhhhhhheEccCcccccccc---
Confidence            6899999998 677775  333  37999999999998777632             4579999999999 877665   


Q ss_pred             CCCCccEEEEEc
Q 035891          175 LAPNLKHIEVYN  186 (309)
Q Consensus       175 ~l~~L~~L~l~~  186 (309)
                        ++|+.|++..
T Consensus       112 --~sLe~L~L~~  121 (426)
T PRK15386        112 --ESVRSLEIKG  121 (426)
T ss_pred             --cccceEEeCC
Confidence              5688888853

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.05  E-value=1.1e-05  Score=71.98  Aligned_cols=62  Identities=19%  Similarity=0.379  Sum_probs=31.4

Q ss_pred             hhhccCCCceEEEEEecchhhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCc
Q 035891           61 ELLGLERLNVLTITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLE  134 (309)
Q Consensus        61 ~l~~L~~L~~L~l~~~~~~~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~  134 (309)
                      .+..+.+++.|+++.+....++   ..+   .   +|+.|.+.+|..++.++ ..++  ++|+.|++.+|.++.
T Consensus        47 r~~~~~~l~~L~Is~c~L~sLP---~LP---~---sLtsL~Lsnc~nLtsLP-~~LP--~nLe~L~Ls~Cs~L~  108 (426)
T PRK15386         47 QIEEARASGRLYIKDCDIESLP---VLP---N---ELTEITIENCNNLTTLP-GSIP--EGLEKLTVCHCPEIS  108 (426)
T ss_pred             HHHHhcCCCEEEeCCCCCcccC---CCC---C---CCcEEEccCCCCcccCC-chhh--hhhhheEccCccccc
Confidence            3444566666666544333332   111   1   56666666666665554 1222  356666666665444

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.97  E-value=6e-07  Score=78.59  Aligned_cols=217  Identities=16%  Similarity=0.229  Sum_probs=131.1

Q ss_pred             CCCCCcEEecCCCcCCCC--CchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhh-hccCCCceEEEEEec-c
Q 035891            3 YLVNLKCLNLEYTYRIYK--IPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEEL-LGLERLNVLTITLQS-F   78 (309)
Q Consensus         3 ~L~~Lr~L~l~~~~~l~~--lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l-~~L~~L~~L~l~~~~-~   78 (309)
                      ..++|.||+++.|..++.  +.. ....++.++.+-.++|.-...           ..+..+ +....+..+++.... .
T Consensus       214 gC~kL~~lNlSwc~qi~~~gv~~-~~rG~~~l~~~~~kGC~e~~l-----------e~l~~~~~~~~~i~~lnl~~c~~l  281 (483)
T KOG4341|consen  214 GCRKLKYLNLSWCPQISGNGVQA-LQRGCKELEKLSLKGCLELEL-----------EALLKAAAYCLEILKLNLQHCNQL  281 (483)
T ss_pred             hhhhHHHhhhccCchhhcCcchH-HhccchhhhhhhhcccccccH-----------HHHHHHhccChHhhccchhhhccc
Confidence            457899999999966664  322 245677788887777654311           111111 111223333321110 1


Q ss_pred             hhhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCc-cccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCc
Q 035891           79 AALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTL-ASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSL  157 (309)
Q Consensus        79 ~~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L  157 (309)
                      +...-+.....    ++.|+.++.++|....+...-.+ .+..+|+.+-+.+|..+........+.         +.+.|
T Consensus       282 TD~~~~~i~~~----c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r---------n~~~L  348 (483)
T KOG4341|consen  282 TDEDLWLIACG----CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR---------NCPHL  348 (483)
T ss_pred             cchHHHHHhhh----hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc---------CChhh
Confidence            11111111111    33688888888888766654334 466789999999998887777766553         78889


Q ss_pred             ceEEEeCc-eeccc---CccCCCCCccEEEEEcCcccccc-ccccccCCcCcccccCCccCCccceeeccccccccccCC
Q 035891          158 HKVSIWGS-KLRHV---TWLILAPNLKHIEVYNCRYLDEI-ISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYP  232 (309)
Q Consensus       158 ~~L~l~~c-~l~~l---~~l~~l~~L~~L~l~~c~~l~~~-~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~  232 (309)
                      +.+++.+| ...+-   ..-.+.|.|+.+.++.|..+++- +.+..         ....+...|..+.+.+|+.++.-..
T Consensus       349 e~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~---------~~~c~~~~l~~lEL~n~p~i~d~~L  419 (483)
T KOG4341|consen  349 ERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLS---------SSSCSLEGLEVLELDNCPLITDATL  419 (483)
T ss_pred             hhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhh---------hccccccccceeeecCCCCchHHHH
Confidence            99999888 33322   12345688999999888777654 10000         2335667888888888887765433


Q ss_pred             Ccc-CCCCccEEeecCcccCCC
Q 035891          233 KAL-PFPHLKELEVNLCPKLEK  253 (309)
Q Consensus       233 ~~~-~~~~L~~L~i~~C~~L~~  253 (309)
                      +.. .++.||.+++.+|....+
T Consensus       420 e~l~~c~~Leri~l~~~q~vtk  441 (483)
T KOG4341|consen  420 EHLSICRNLERIELIDCQDVTK  441 (483)
T ss_pred             HHHhhCcccceeeeechhhhhh
Confidence            332 678888888888877655

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.79  E-value=2.1e-06  Score=78.11  Aligned_cols=125  Identities=21%  Similarity=0.218  Sum_probs=62.9

Q ss_pred             CCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccc---------c-CCcccchhhhhccCCCceE
Q 035891            2 KYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSIL---------F-GGSLVLVEELLGLERLNVL   71 (309)
Q Consensus         2 ~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l---------~-~~~~~~~~~l~~L~~L~~L   71 (309)
                      ++|..|.||+++.| .+..+|.. +..|+ |++|.+++|+++..|.++.+         . .....++..++.+.+|+.|
T Consensus       118 ~~L~~lt~l~ls~N-qlS~lp~~-lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l  194 (722)
T KOG0532|consen  118 CNLEALTFLDLSSN-QLSHLPDG-LCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDL  194 (722)
T ss_pred             hhhhHHHHhhhccc-hhhcCChh-hhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHH
Confidence            45667777788877 77777776 55554 77777777777544443210         0 0112234444444555555


Q ss_pred             EEEEecchhhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcC
Q 035891           72 TITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEID  139 (309)
Q Consensus        72 ~l~~~~~~~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~  139 (309)
                      ++..+....+++-....       .|..|+++. +.+..+| .++-+|++|++|-+.+ +-+++-++.
T Consensus       195 ~vrRn~l~~lp~El~~L-------pLi~lDfSc-Nkis~iP-v~fr~m~~Lq~l~Len-NPLqSPPAq  252 (722)
T KOG0532|consen  195 NVRRNHLEDLPEELCSL-------PLIRLDFSC-NKISYLP-VDFRKMRHLQVLQLEN-NPLQSPPAQ  252 (722)
T ss_pred             HHhhhhhhhCCHHHhCC-------ceeeeeccc-Cceeecc-hhhhhhhhheeeeecc-CCCCCChHH
Confidence            44444433333221111       144455443 4444454 2344555555555554 344444443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.79  E-value=3.5e-06  Score=72.24  Aligned_cols=34  Identities=21%  Similarity=0.231  Sum_probs=17.8

Q ss_pred             CCCCcEEecCCCcCCCC-----CchhhhcCCCCCceEEecc
Q 035891            4 LVNLKCLNLEYTYRIYK-----IPGQVISNLKMLEALRMFK   39 (309)
Q Consensus         4 L~~Lr~L~l~~~~~l~~-----lp~~~i~~L~~L~~L~l~~   39 (309)
                      ...+.++++++| .+..     +.+ ++.+.++|+.-++++
T Consensus        29 ~~s~~~l~lsgn-t~G~EAa~~i~~-~L~~~~~L~~v~~sd   67 (382)
T KOG1909|consen   29 MDSLTKLDLSGN-TFGTEAARAIAK-VLASKKELREVNLSD   67 (382)
T ss_pred             cCceEEEeccCC-chhHHHHHHHHH-HHhhcccceeeehHh
Confidence            345666677766 4442     222 245555565555543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.79  E-value=2.9e-06  Score=72.70  Aligned_cols=216  Identities=16%  Similarity=0.133  Sum_probs=112.7

Q ss_pred             CCCCCcEEecCCCc--CC-CCCchh------hhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEE
Q 035891            3 YLVNLKCLNLEYTY--RI-YKIPGQ------VISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTI   73 (309)
Q Consensus         3 ~L~~Lr~L~l~~~~--~l-~~lp~~------~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l   73 (309)
                      +.+.||..++++-.  .. ..+|..      ++-..++|++|++++|-+..-        ....+-.-+.+...|+.|.+
T Consensus        56 ~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~--------g~~~l~~ll~s~~~L~eL~L  127 (382)
T KOG1909|consen   56 SKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK--------GIRGLEELLSSCTDLEELYL  127 (382)
T ss_pred             hcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc--------chHHHHHHHHhccCHHHHhh
Confidence            34566666666430  11 124432      133556777788777776510        00112222455677777777


Q ss_pred             EEecchh---------hhhhcCCcCccccCCCcCeEEEecCCCCCeeccc----CccccccCCEEEEecCCCCceEEc--
Q 035891           74 TLQSFAA---------LHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVF----TLASLRHLEALDMTNCKDLEEMEI--  138 (309)
Q Consensus        74 ~~~~~~~---------l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~----~l~~l~~L~~L~l~~~~~l~~l~~--  138 (309)
                      .+++...         +.++....+..+ .+.|+.+...+ +.+.+.+..    .+...+.|+.+.+.. +.+..-+.  
T Consensus       128 ~N~Glg~~ag~~l~~al~~l~~~kk~~~-~~~Lrv~i~~r-Nrlen~ga~~~A~~~~~~~~leevr~~q-N~I~~eG~~a  204 (382)
T KOG1909|consen  128 NNCGLGPEAGGRLGRALFELAVNKKAAS-KPKLRVFICGR-NRLENGGATALAEAFQSHPTLEEVRLSQ-NGIRPEGVTA  204 (382)
T ss_pred             hcCCCChhHHHHHHHHHHHHHHHhccCC-CcceEEEEeec-cccccccHHHHHHHHHhccccceEEEec-ccccCchhHH
Confidence            6665432         112222222222 44677777776 445554321    345557788888776 44433322  


Q ss_pred             --CccCcccccCCCcccccCcceEEEeCceecccC------ccCCCCCccEEEEEcCccccccccccccCCcCcccccCC
Q 035891          139 --DYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVT------WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNL  210 (309)
Q Consensus       139 --~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l~------~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~  210 (309)
                        ....          .+++|+.|++.+|-++.-.      .+..+|+|+.|++++|..-..-.     .++..   ...
T Consensus       205 l~eal~----------~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga-----~a~~~---al~  266 (382)
T KOG1909|consen  205 LAEALE----------HCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGA-----IAFVD---ALK  266 (382)
T ss_pred             HHHHHH----------hCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccH-----HHHHH---HHh
Confidence              1111          5788888888888222111      34566788888888884221110     00000   112


Q ss_pred             ccCCccceeeccccccccc-----cCCCccCCCCccEEeecCc
Q 035891          211 FPFARLESLSLYALGNLRS-----IYPKALPFPHLKELEVNLC  248 (309)
Q Consensus       211 ~~~~~L~~L~L~~~~~L~~-----l~~~~~~~~~L~~L~i~~C  248 (309)
                      ..+|+|+.|.+.++ .++.     +.......|.|+.|.+.+|
T Consensus       267 ~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN  308 (382)
T KOG1909|consen  267 ESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGN  308 (382)
T ss_pred             ccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence            44788888888875 3432     1112224788888888887

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.79  E-value=1.6e-06  Score=79.29  Aligned_cols=99  Identities=32%  Similarity=0.372  Sum_probs=44.6

Q ss_pred             CCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhc
Q 035891            6 NLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLL   85 (309)
Q Consensus         6 ~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~   85 (309)
                      .++.++++.+ .+..+-.. ++.+++|..|++.++.+.             .+...+..+++|+.|+++++.+..+..+.
T Consensus        73 ~l~~l~l~~n-~i~~~~~~-l~~~~~l~~l~l~~n~i~-------------~i~~~l~~~~~L~~L~ls~N~I~~i~~l~  137 (414)
T KOG0531|consen   73 SLKELNLRQN-LIAKILNH-LSKLKSLEALDLYDNKIE-------------KIENLLSSLVNLQVLDLSFNKITKLEGLS  137 (414)
T ss_pred             hHHhhccchh-hhhhhhcc-cccccceeeeeccccchh-------------hcccchhhhhcchheeccccccccccchh
Confidence            3344444444 44443222 455555555555555553             11111445555555555555444444333


Q ss_pred             CCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEec
Q 035891           86 TSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTN  129 (309)
Q Consensus        86 ~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~  129 (309)
                      ...       .|+.|++.++ .+..+  ..+..+++|+.+++++
T Consensus       138 ~l~-------~L~~L~l~~N-~i~~~--~~~~~l~~L~~l~l~~  171 (414)
T KOG0531|consen  138 TLT-------LLKELNLSGN-LISDI--SGLESLKSLKLLDLSY  171 (414)
T ss_pred             hcc-------chhhheeccC-cchhc--cCCccchhhhcccCCc
Confidence            322       3555555552 23333  2233344555555554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.73  E-value=3.7e-06  Score=80.79  Aligned_cols=127  Identities=17%  Similarity=0.204  Sum_probs=70.7

Q ss_pred             CcCeEEEecCCCCCeeccc-CccccccCCEEEEecCCCCceE-EcCccCcccccCCCcccccCcceEEEeCceecccCcc
Q 035891           96 NTPSLCLRNCHSLSSLSVF-TLASLRHLEALDMTNCKDLEEM-EIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVTWL  173 (309)
Q Consensus        96 ~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~l~~l-~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l~~l  173 (309)
                      +|++|++++-..+..-... .-..+|+|++|.+.+- .+..- ....+.          +||+|..|||++++++++.++
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~----------sFpNL~sLDIS~TnI~nl~GI  191 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCA----------SFPNLRSLDISGTNISNLSGI  191 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhh----------ccCccceeecCCCCccCcHHH
Confidence            5777887774332211101 1235778888888762 22111 112222          688888888888877777777


Q ss_pred             CCCCCccEEEEEcCcccc--ccccccccCCcCcccccCCccCCccceeecccccccccc------CCCccCCCCccEEee
Q 035891          174 ILAPNLKHIEVYNCRYLD--EIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSI------YPKALPFPHLKELEV  245 (309)
Q Consensus       174 ~~l~~L~~L~l~~c~~l~--~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l------~~~~~~~~~L~~L~i  245 (309)
                      +++++|+.|.+.+-....  ++              ..+..+.+|+.|++++-.....-      -.....+|.|+.|+.
T Consensus       192 S~LknLq~L~mrnLe~e~~~~l--------------~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDc  257 (699)
T KOG3665|consen  192 SRLKNLQVLSMRNLEFESYQDL--------------IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDC  257 (699)
T ss_pred             hccccHHHHhccCCCCCchhhH--------------HHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEec
Confidence            788888887776543221  11              24556777888887752211111      011224677777776


Q ss_pred             cC
Q 035891          246 NL  247 (309)
Q Consensus       246 ~~  247 (309)
                      ++
T Consensus       258 Sg  259 (699)
T KOG3665|consen  258 SG  259 (699)
T ss_pred             CC
Confidence            54

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.69  E-value=2e-05  Score=75.84  Aligned_cols=137  Identities=19%  Similarity=0.165  Sum_probs=80.1

Q ss_pred             CCCcEEecCCCcCCCC-Cchhhhc-CCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhh
Q 035891            5 VNLKCLNLEYTYRIYK-IPGQVIS-NLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALH   82 (309)
Q Consensus         5 ~~Lr~L~l~~~~~l~~-lp~~~i~-~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~   82 (309)
                      .+||+|+++|...+.. -|.. ++ -||+|+.|.+.+-.+..           .....-+.++++|..|++++.+...+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~k-ig~~LPsL~sL~i~~~~~~~-----------~dF~~lc~sFpNL~sLDIS~TnI~nl~  189 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKK-IGTMLPSLRSLVISGRQFDN-----------DDFSQLCASFPNLRSLDISGTNISNLS  189 (699)
T ss_pred             HhhhhcCccccchhhccHHHH-HhhhCcccceEEecCceecc-----------hhHHHHhhccCccceeecCCCCccCcH
Confidence            4688888887633332 3444 44 47888888887765541           334455777888888888766666664


Q ss_pred             hhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEE
Q 035891           83 RLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSI  162 (309)
Q Consensus        83 ~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l  162 (309)
                      .+..+.       +|+.|.+.+.+.........+-++++|+.|+++.-.+...-...     ..+......+|.|+.|+.
T Consensus       190 GIS~Lk-------nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii-----~qYlec~~~LpeLrfLDc  257 (699)
T KOG3665|consen  190 GISRLK-------NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKII-----EQYLECGMVLPELRFLDC  257 (699)
T ss_pred             HHhccc-------cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHH-----HHHHHhcccCccccEEec
Confidence            444432       57777777655443333335567778888888863332221000     000000015777777777


Q ss_pred             eCc
Q 035891          163 WGS  165 (309)
Q Consensus       163 ~~c  165 (309)
                      ++.
T Consensus       258 SgT  260 (699)
T KOG3665|consen  258 SGT  260 (699)
T ss_pred             CCc
Confidence            766

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.63  E-value=6.6e-06  Score=75.19  Aligned_cols=103  Identities=25%  Similarity=0.255  Sum_probs=75.0

Q ss_pred             CCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhh
Q 035891            2 KYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAAL   81 (309)
Q Consensus         2 ~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l   81 (309)
                      +.+++|.+|++.+| .++.+... +..+++|++|++++|.+..              +.++..+..|+.|++.++.+..+
T Consensus        92 ~~~~~l~~l~l~~n-~i~~i~~~-l~~~~~L~~L~ls~N~I~~--------------i~~l~~l~~L~~L~l~~N~i~~~  155 (414)
T KOG0531|consen   92 SKLKSLEALDLYDN-KIEKIENL-LSSLVNLQVLDLSFNKITK--------------LEGLSTLTLLKELNLSGNLISDI  155 (414)
T ss_pred             ccccceeeeecccc-chhhcccc-hhhhhcchheecccccccc--------------ccchhhccchhhheeccCcchhc
Confidence            56789999999999 89988874 7889999999999999862              35566777788888887777666


Q ss_pred             hhhcCCcCccccCCCcCeEEEecCCCCCeecc-cCccccccCCEEEEec
Q 035891           82 HRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSV-FTLASLRHLEALDMTN  129 (309)
Q Consensus        82 ~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~  129 (309)
                      ..+..       +++|+.+++.++. ...+.. . +..+.+++.+.+.+
T Consensus       156 ~~~~~-------l~~L~~l~l~~n~-i~~ie~~~-~~~~~~l~~l~l~~  195 (414)
T KOG0531|consen  156 SGLES-------LKSLKLLDLSYNR-IVDIENDE-LSELISLEELDLGG  195 (414)
T ss_pred             cCCcc-------chhhhcccCCcch-hhhhhhhh-hhhccchHHHhccC
Confidence            65544       2257778877743 333321 1 35667777777776

>PLN03150 hypothetical protein; Provisional

Probab=97.60  E-value=0.00013  Score=70.17  Aligned_cols=108  Identities=20%  Similarity=0.264  Sum_probs=77.8

Q ss_pred             CCcEEecCCCcCCC-CCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecch-hhhh
Q 035891            6 NLKCLNLEYTYRIY-KIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFA-ALHR   83 (309)
Q Consensus         6 ~Lr~L~l~~~~~l~-~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~-~l~~   83 (309)
                      .++.|+|+++ .+. .+|.. +++|++|++|++++|.+.            ..++..++.+++|+.|+++.+... .+++
T Consensus       419 ~v~~L~L~~n-~L~g~ip~~-i~~L~~L~~L~Ls~N~l~------------g~iP~~~~~l~~L~~LdLs~N~lsg~iP~  484 (623)
T PLN03150        419 FIDGLGLDNQ-GLRGFIPND-ISKLRHLQSINLSGNSIR------------GNIPPSLGSITSLEVLDLSYNSFNGSIPE  484 (623)
T ss_pred             EEEEEECCCC-CccccCCHH-HhCCCCCCEEECCCCccc------------CcCChHHhCCCCCCEEECCCCCCCCCCch
Confidence            3678999998 665 68887 899999999999999886            567778999999999999877654 3333


Q ss_pred             hcCCcCccccCCCcCeEEEecCCCCCeecccCccc-cccCCEEEEecCCCCc
Q 035891           84 LLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLAS-LRHLEALDMTNCKDLE  134 (309)
Q Consensus        84 ~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~-l~~L~~L~l~~~~~l~  134 (309)
                      ...  .    +++|+.|+++++.....+| ..+.. ..++..+++.++..+.
T Consensus       485 ~l~--~----L~~L~~L~Ls~N~l~g~iP-~~l~~~~~~~~~l~~~~N~~lc  529 (623)
T PLN03150        485 SLG--Q----LTSLRILNLNGNSLSGRVP-AALGGRLLHRASFNFTDNAGLC  529 (623)
T ss_pred             HHh--c----CCCCCEEECcCCcccccCC-hHHhhccccCceEEecCCcccc
Confidence            222  1    4479999999876554555 23332 3456778887754433

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.60  E-value=2.4e-05  Score=66.04  Aligned_cols=153  Identities=18%  Similarity=0.133  Sum_probs=87.2

Q ss_pred             EEecCCCcCCCCCch--hhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecch-hhhhhc
Q 035891            9 CLNLEYTYRIYKIPG--QVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFA-ALHRLL   85 (309)
Q Consensus         9 ~L~l~~~~~l~~lp~--~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~-~l~~~~   85 (309)
                      .|.+.++ .+.....  .+-...+.++.+|+.+|.+..|          ..+..-+++|+.|++|+++.+... .+..++
T Consensus        49 llvln~~-~id~~gd~~~~~~~~~~v~elDL~~N~iSdW----------seI~~ile~lP~l~~LNls~N~L~s~I~~lp  117 (418)
T KOG2982|consen   49 LLVLNGS-IIDNEGDVMLFGSSVTDVKELDLTGNLISDW----------SEIGAILEQLPALTTLNLSCNSLSSDIKSLP  117 (418)
T ss_pred             hheecCC-CCCcchhHHHHHHHhhhhhhhhcccchhccH----------HHHHHHHhcCccceEeeccCCcCCCccccCc
Confidence            4555555 5544322  1224567889999999988866          667777899999999999765543 233332


Q ss_pred             CCcCccccCCCcCeEEEecCCCCCeec-ccCccccccCCEEEEecCCCCceEEcCcc-CcccccCCCcccccCcceEEEe
Q 035891           86 TSPSLQSIFSNTPSLCLRNCHSLSSLS-VFTLASLRHLEALDMTNCKDLEEMEIDYA-GEEVKRIRETHGFFSLHKVSIW  163 (309)
Q Consensus        86 ~~~~l~~~l~~L~~L~l~~~~~l~~~~-~~~l~~l~~L~~L~l~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~  163 (309)
                      .  .    ..+|+.|.+.+. .+.-.. ...+..+|.++.|+++. +++..+-.+.. ...        --+.+++|+..
T Consensus       118 ~--p----~~nl~~lVLNgT-~L~w~~~~s~l~~lP~vtelHmS~-N~~rq~n~Dd~c~e~--------~s~~v~tlh~~  181 (418)
T KOG2982|consen  118 L--P----LKNLRVLVLNGT-GLSWTQSTSSLDDLPKVTELHMSD-NSLRQLNLDDNCIED--------WSTEVLTLHQL  181 (418)
T ss_pred             c--c----ccceEEEEEcCC-CCChhhhhhhhhcchhhhhhhhcc-chhhhhccccccccc--------cchhhhhhhcC
Confidence            1  1    337899988873 222111 12456778888888887 44444433211 100        12345555555


Q ss_pred             Cc-e--ecccCcc-CCCCCccEEEEEcCc
Q 035891          164 GS-K--LRHVTWL-ILAPNLKHIEVYNCR  188 (309)
Q Consensus       164 ~c-~--l~~l~~l-~~l~~L~~L~l~~c~  188 (309)
                      +| .  ....--+ ..+|++..+-+.+|+
T Consensus       182 ~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P  210 (418)
T KOG2982|consen  182 PCLEQLWLNKNKLSRIFPNVNSVFVCEGP  210 (418)
T ss_pred             CcHHHHHHHHHhHHhhcccchheeeecCc
Confidence            55 1  1111111 235777777777764

>PLN03150 hypothetical protein; Provisional

Probab=97.48  E-value=0.00026  Score=68.05  Aligned_cols=111  Identities=14%  Similarity=0.158  Sum_probs=78.2

Q ss_pred             CCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecch-hhhhhcCCcCccccCCCcCeEEEecCCCCC
Q 035891           31 MLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFA-ALHRLLTSPSLQSIFSNTPSLCLRNCHSLS  109 (309)
Q Consensus        31 ~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~-~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~  109 (309)
                      .++.|++.++.+.            ...+..+..+++|+.|+++.+... .++....  .    +++|+.|+++++....
T Consensus       419 ~v~~L~L~~n~L~------------g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~--~----l~~L~~LdLs~N~lsg  480 (623)
T PLN03150        419 FIDGLGLDNQGLR------------GFIPNDISKLRHLQSINLSGNSIRGNIPPSLG--S----ITSLEVLDLSYNSFNG  480 (623)
T ss_pred             EEEEEECCCCCcc------------ccCCHHHhCCCCCCEEECCCCcccCcCChHHh--C----CCCCCEEECCCCCCCC
Confidence            4788999998886            667888999999999999876654 3332211  1    4479999999975544


Q ss_pred             eecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCc-eeccc
Q 035891          110 SLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGS-KLRHV  170 (309)
Q Consensus       110 ~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c-~l~~l  170 (309)
                      .+| ..+..+++|+.|+++++.-...++.....          .+.++..+++.+| .+-..
T Consensus       481 ~iP-~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~----------~~~~~~~l~~~~N~~lc~~  531 (623)
T PLN03150        481 SIP-ESLGQLTSLRILNLNGNSLSGRVPAALGG----------RLLHRASFNFTDNAGLCGI  531 (623)
T ss_pred             CCc-hHHhcCCCCCEEECcCCcccccCChHHhh----------ccccCceEEecCCccccCC
Confidence            565 56788999999999986433455543322          3456778888888 44433

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.42  E-value=0.00026  Score=56.54  Aligned_cols=104  Identities=16%  Similarity=0.201  Sum_probs=68.2

Q ss_pred             CcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCc---eecccCc
Q 035891           96 NTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGS---KLRHVTW  172 (309)
Q Consensus        96 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c---~l~~l~~  172 (309)
                      ....+++++++ +..+  ..++.++.|..|.+.. +.+..+......          .+|+|..|.+.+|   .+.++..
T Consensus        43 ~~d~iDLtdNd-l~~l--~~lp~l~rL~tLll~n-NrIt~I~p~L~~----------~~p~l~~L~LtnNsi~~l~dl~p  108 (233)
T KOG1644|consen   43 QFDAIDLTDND-LRKL--DNLPHLPRLHTLLLNN-NRITRIDPDLDT----------FLPNLKTLILTNNSIQELGDLDP  108 (233)
T ss_pred             ccceecccccc-hhhc--ccCCCccccceEEecC-Ccceeeccchhh----------hccccceEEecCcchhhhhhcch
Confidence            45566666633 2222  3566778888888887 778888765553          6888999999988   4445546


Q ss_pred             cCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccc
Q 035891          173 LILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYA  223 (309)
Q Consensus       173 l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~  223 (309)
                      +..+|.|++|.+-+++--..--.       .   .-.+..+|+|+.|++.+
T Consensus       109 La~~p~L~~Ltll~Npv~~k~~Y-------R---~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  109 LASCPKLEYLTLLGNPVEHKKNY-------R---LYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             hccCCccceeeecCCchhcccCc-------e---eEEEEecCcceEeehhh
Confidence            77888899988877642221110       0   02346778888888875

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.35  E-value=5.2e-06  Score=77.68  Aligned_cols=79  Identities=16%  Similarity=0.161  Sum_probs=52.8

Q ss_pred             CCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCceecccCcc
Q 035891           94 FSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVTWL  173 (309)
Q Consensus        94 l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l~~l  173 (309)
                      ++.+++|+++++ .+...  ..+..++.|+.|+++. |.+..++.-...          .+ .|..|.+.+|.++.+-.+
T Consensus       186 l~ale~LnLshN-k~~~v--~~Lr~l~~LkhLDlsy-N~L~~vp~l~~~----------gc-~L~~L~lrnN~l~tL~gi  250 (1096)
T KOG1859|consen  186 LPALESLNLSHN-KFTKV--DNLRRLPKLKHLDLSY-NCLRHVPQLSMV----------GC-KLQLLNLRNNALTTLRGI  250 (1096)
T ss_pred             HHHhhhhccchh-hhhhh--HHHHhccccccccccc-chhccccccchh----------hh-hheeeeecccHHHhhhhH
Confidence            446888888874 33443  2456677888888887 567666643221          23 388888888866666667


Q ss_pred             CCCCCccEEEEEcC
Q 035891          174 ILAPNLKHIEVYNC  187 (309)
Q Consensus       174 ~~l~~L~~L~l~~c  187 (309)
                      .++.+|..|+++++
T Consensus       251 e~LksL~~LDlsyN  264 (1096)
T KOG1859|consen  251 ENLKSLYGLDLSYN  264 (1096)
T ss_pred             HhhhhhhccchhHh
Confidence            77888888888765

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.33  E-value=0.00019  Score=43.01  Aligned_cols=41  Identities=24%  Similarity=0.276  Sum_probs=29.8

Q ss_pred             CCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhh
Q 035891           30 KMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHR   83 (309)
Q Consensus        30 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~   83 (309)
                      ++|++|++++|.+.             .++..+++|++|+.|+++++....++.
T Consensus         1 ~~L~~L~l~~N~i~-------------~l~~~l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-------------DLPPELSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-S-------------SHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred             CcceEEEccCCCCc-------------ccCchHhCCCCCCEEEecCCCCCCCcC
Confidence            57999999999994             455568899999999997666554443

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.30  E-value=0.00057  Score=54.70  Aligned_cols=13  Identities=15%  Similarity=0.066  Sum_probs=7.6

Q ss_pred             cccCcceEEEeCc
Q 035891          153 GFFSLHKVSIWGS  165 (309)
Q Consensus       153 ~~~~L~~L~l~~c  165 (309)
                      .+|+|+.|+..+-
T Consensus       138 klp~l~~LDF~kV  150 (233)
T KOG1644|consen  138 KLPSLRTLDFQKV  150 (233)
T ss_pred             ecCcceEeehhhh
Confidence            4566666666544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.22  E-value=1.2e-05  Score=74.74  Aligned_cols=82  Identities=26%  Similarity=0.417  Sum_probs=43.9

Q ss_pred             CcCeEEEecCCCCCeecccCcc-ccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCc-eeccc--C
Q 035891           96 NTPSLCLRNCHSLSSLSVFTLA-SLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGS-KLRHV--T  171 (309)
Q Consensus        96 ~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c-~l~~l--~  171 (309)
                      +|+.+++..|..+++.....++ .+++|+.|.+..|..+.+.+......         .+++|++|++++| .+.+-  .
T Consensus       244 ~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~---------~~~~L~~L~l~~c~~~~d~~l~  314 (482)
T KOG1947|consen  244 KLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAE---------RCPSLRELDLSGCHGLTDSGLE  314 (482)
T ss_pred             CcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHH---------hcCcccEEeeecCccchHHHHH
Confidence            5777777776655554433333 25677777766665544444333221         4666777777777 44321  1


Q ss_pred             -ccCCCCCccEEEEEc
Q 035891          172 -WLILAPNLKHIEVYN  186 (309)
Q Consensus       172 -~l~~l~~L~~L~l~~  186 (309)
                       ...++++|+.|.+..
T Consensus       315 ~~~~~c~~l~~l~~~~  330 (482)
T KOG1947|consen  315 ALLKNCPNLRELKLLS  330 (482)
T ss_pred             HHHHhCcchhhhhhhh
Confidence             123355555544433

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.06  E-value=3.6e-05  Score=71.47  Aligned_cols=117  Identities=23%  Similarity=0.307  Sum_probs=72.0

Q ss_pred             CCCCcEEecCCCcCCCC--CchhhhcCCCCCceEEeccc-CCCCccCCccccCCcccchhhhhccCCCceEEEEEec-ch
Q 035891            4 LVNLKCLNLEYTYRIYK--IPGQVISNLKMLEALRMFKC-GSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQS-FA   79 (309)
Q Consensus         4 L~~Lr~L~l~~~~~l~~--lp~~~i~~L~~L~~L~l~~~-~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~-~~   79 (309)
                      ...|+.|.+.++..+..  +-. +...+++|+.|++++| .....        ...........+++|+.+++.... .+
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~--------~~~~~~~~~~~~~~L~~l~l~~~~~is  257 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDA-LALKCPNLEELDLSGCCLLITL--------SPLLLLLLLSICRKLKSLDLSGCGLVT  257 (482)
T ss_pred             CchhhHhhhcccccCChhhHHH-HHhhCchhheecccCccccccc--------chhHhhhhhhhcCCcCccchhhhhccC
Confidence            46778888888856665  223 3678899999999874 22110        001112234445778888876444 12


Q ss_pred             --hhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCc-cccccCCEEEEecCCCCce
Q 035891           80 --ALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTL-ASLRHLEALDMTNCKDLEE  135 (309)
Q Consensus        80 --~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~l~~  135 (309)
                        .+..+...      +++|+.|.+.+|..+++.....+ ..+++|+.|++++|..+.+
T Consensus       258 d~~l~~l~~~------c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d  310 (482)
T KOG1947|consen  258 DIGLSALASR------CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD  310 (482)
T ss_pred             chhHHHHHhh------CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchH
Confidence              22233222      33799999888887655543333 5678899999999887633

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.79  E-value=0.00039  Score=57.73  Aligned_cols=32  Identities=16%  Similarity=0.237  Sum_probs=14.6

Q ss_pred             CCcEEecCCCcCCCCCchhhhcCCCCCceEEeccc
Q 035891            6 NLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKC   40 (309)
Q Consensus         6 ~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~   40 (309)
                      .|++|++.+. .++.+..  +..|++|++|.++.|
T Consensus        44 ~le~ls~~n~-gltt~~~--~P~Lp~LkkL~lsdn   75 (260)
T KOG2739|consen   44 ELELLSVINV-GLTTLTN--FPKLPKLKKLELSDN   75 (260)
T ss_pred             chhhhhhhcc-ceeeccc--CCCcchhhhhcccCC
Confidence            3444444444 3333332  344555555555555

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.72  E-value=2.4e-05  Score=73.40  Aligned_cols=97  Identities=23%  Similarity=0.334  Sum_probs=55.6

Q ss_pred             cEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhcCC
Q 035891            8 KCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLLTS   87 (309)
Q Consensus         8 r~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~~~   87 (309)
                      .+.+.++| .+..+..+ +.-++.||.|++++|++.              -...+..+++|++|+++.|....++.+...
T Consensus       167 ~~a~fsyN-~L~~mD~S-Lqll~ale~LnLshNk~~--------------~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~  230 (1096)
T KOG1859|consen  167 ATASFSYN-RLVLMDES-LQLLPALESLNLSHNKFT--------------KVDNLRRLPKLKHLDLSYNCLRHVPQLSMV  230 (1096)
T ss_pred             hhhhcchh-hHHhHHHH-HHHHHHhhhhccchhhhh--------------hhHHHHhcccccccccccchhccccccchh
Confidence            34445555 55555554 556666777777777664              123566667777777766655555544332


Q ss_pred             cCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEec
Q 035891           88 PSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTN  129 (309)
Q Consensus        88 ~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~  129 (309)
                      .-      .|+.|.+.+ +.++.+  ..+.++++|+.|++++
T Consensus       231 gc------~L~~L~lrn-N~l~tL--~gie~LksL~~LDlsy  263 (1096)
T KOG1859|consen  231 GC------KLQLLNLRN-NALTTL--RGIENLKSLYGLDLSY  263 (1096)
T ss_pred             hh------hheeeeecc-cHHHhh--hhHHhhhhhhccchhH
Confidence            11      366666666 444444  3556666677776665

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.57  E-value=0.00061  Score=57.75  Aligned_cols=60  Identities=23%  Similarity=0.264  Sum_probs=42.3

Q ss_pred             CCCCcEEecCCCcCCCCCch--hhhcCCCCCceEEecccCCCCccCCccccCCcccchhhh-hccCCCceEEEEEec
Q 035891            4 LVNLKCLNLEYTYRIYKIPG--QVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEEL-LGLERLNVLTITLQS   77 (309)
Q Consensus         4 L~~Lr~L~l~~~~~l~~lp~--~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l-~~L~~L~~L~l~~~~   77 (309)
                      .++++.||+.+| .++.-.+  .+..+|+.|++|+++.|...             ..++.+ .++.+|+++-+.+.+
T Consensus        70 ~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~-------------s~I~~lp~p~~nl~~lVLNgT~  132 (418)
T KOG2982|consen   70 VTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLS-------------SDIKSLPLPLKNLRVLVLNGTG  132 (418)
T ss_pred             hhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCC-------------CccccCcccccceEEEEEcCCC
Confidence            357788999998 7775332  14678999999999888773             444444 467788888775444

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.37  E-value=0.0012  Score=33.03  Aligned_cols=22  Identities=41%  Similarity=0.605  Sum_probs=17.3

Q ss_pred             CCcEEecCCCcCCCCCchhhhcCC
Q 035891            6 NLKCLNLEYTYRIYKIPGQVISNL   29 (309)
Q Consensus         6 ~Lr~L~l~~~~~l~~lp~~~i~~L   29 (309)
                      +||+|++++| .++.+|.+ +++|
T Consensus         1 ~L~~Ldls~n-~l~~ip~~-~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGN-NLTSIPSS-FSNL   22 (22)
T ss_dssp             TESEEEETSS-EESEEGTT-TTT-
T ss_pred             CccEEECCCC-cCEeCChh-hcCC
Confidence            5789999999 88888887 6654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.00  E-value=0.00094  Score=53.45  Aligned_cols=84  Identities=17%  Similarity=0.199  Sum_probs=50.8

Q ss_pred             CceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhc--CCcCccccCCCcCeEEEecCCCCC
Q 035891           32 LEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLL--TSPSLQSIFSNTPSLCLRNCHSLS  109 (309)
Q Consensus        32 L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~--~~~~l~~~l~~L~~L~l~~~~~l~  109 (309)
                      ++.+|.+++.+.            ...++.+++++.++.|.+.  .+..+..|.  ....+   .++|+.|++++|..++
T Consensus       103 IeaVDAsds~I~------------~eGle~L~~l~~i~~l~l~--~ck~~dD~~L~~l~~~---~~~L~~L~lsgC~rIT  165 (221)
T KOG3864|consen  103 IEAVDASDSSIM------------YEGLEHLRDLRSIKSLSLA--NCKYFDDWCLERLGGL---APSLQDLDLSGCPRIT  165 (221)
T ss_pred             EEEEecCCchHH------------HHHHHHHhccchhhhheec--cccchhhHHHHHhccc---ccchheeeccCCCeec
Confidence            566666666665            4556667777777777664  333333221  11111   3367777777777777


Q ss_pred             eecccCccccccCCEEEEecCCC
Q 035891          110 SLSVFTLASLRHLEALDMTNCKD  132 (309)
Q Consensus       110 ~~~~~~l~~l~~L~~L~l~~~~~  132 (309)
                      +..+..+..+++|+.|.+.+...
T Consensus       166 ~~GL~~L~~lknLr~L~l~~l~~  188 (221)
T KOG3864|consen  166 DGGLACLLKLKNLRRLHLYDLPY  188 (221)
T ss_pred             hhHHHHHHHhhhhHHHHhcCchh
Confidence            77666777777777777776544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=95.60  E-value=0.0033  Score=47.38  Aligned_cols=61  Identities=18%  Similarity=0.234  Sum_probs=28.2

Q ss_pred             CCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchh
Q 035891            6 NLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAA   80 (309)
Q Consensus         6 ~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~   80 (309)
                      +|...++++| .++++|+.+-.+.+-..+|++.+|.+             ..+|+++..++.|+.+++.++....
T Consensus        54 el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~nei-------------sdvPeE~Aam~aLr~lNl~~N~l~~  114 (177)
T KOG4579|consen   54 ELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNEI-------------SDVPEELAAMPALRSLNLRFNPLNA  114 (177)
T ss_pred             eEEEEecccc-hhhhCCHHHhhccchhhhhhcchhhh-------------hhchHHHhhhHHhhhcccccCcccc
Confidence            3344444444 44444444223333444444444444             3445555555555555555554443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.39  E-value=0.00067  Score=56.99  Aligned_cols=102  Identities=23%  Similarity=0.173  Sum_probs=65.8

Q ss_pred             CCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhh
Q 035891            4 LVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHR   83 (309)
Q Consensus         4 L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~   83 (309)
                      |.+.+.|+.=+| .+.+|.-  ..+|+.|++|.++-|+++              .++.+..+++|+.|++..+.+..+.+
T Consensus        18 l~~vkKLNcwg~-~L~DIsi--c~kMp~lEVLsLSvNkIs--------------sL~pl~rCtrLkElYLRkN~I~sldE   80 (388)
T KOG2123|consen   18 LENVKKLNCWGC-GLDDISI--CEKMPLLEVLSLSVNKIS--------------SLAPLQRCTRLKELYLRKNCIESLDE   80 (388)
T ss_pred             HHHhhhhcccCC-CccHHHH--HHhcccceeEEeeccccc--------------cchhHHHHHHHHHHHHHhcccccHHH
Confidence            445667777777 7777764  678888888888888875              33556677778888887777776666


Q ss_pred             hcCCcCccccCCCcCeEEEecCCCCCeec----ccCccccccCCEEE
Q 035891           84 LLTSPSLQSIFSNTPSLCLRNCHSLSSLS----VFTLASLRHLEALD  126 (309)
Q Consensus        84 ~~~~~~l~~~l~~L~~L~l~~~~~l~~~~----~~~l~~l~~L~~L~  126 (309)
                      +.-+.+    +++|+.|.|..+.-...-+    ...+..+|+|+.|+
T Consensus        81 L~YLkn----lpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   81 LEYLKN----LPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HHHHhc----CchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            554444    3357777777643322221    01344566777664

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.15  E-value=0.01  Score=49.48  Aligned_cols=111  Identities=21%  Similarity=0.250  Sum_probs=68.3

Q ss_pred             cccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCc--eec-ccC-ccCCCCCccEEEEEcCccccc
Q 035891          117 ASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGS--KLR-HVT-WLILAPNLKHIEVYNCRYLDE  192 (309)
Q Consensus       117 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c--~l~-~l~-~l~~l~~L~~L~l~~c~~l~~  192 (309)
                      ..+..|+.|++.++ .+.++  ..+.          .+|+|++|.++.|  ... .++ ....+|+|++|+++++. ++.
T Consensus        40 d~~~~le~ls~~n~-gltt~--~~~P----------~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~  105 (260)
T KOG2739|consen   40 DEFVELELLSVINV-GLTTL--TNFP----------KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKD  105 (260)
T ss_pred             ccccchhhhhhhcc-ceeec--ccCC----------CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-ccc
Confidence            35567777776654 22222  1222          6889999999988  222 222 23456999999998864 433


Q ss_pred             cccccccCCcCcccccCCccCCccceeeccccccccccCCC----ccCCCCccEEeecCcccCCC
Q 035891          193 IISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPK----ALPFPHLKELEVNLCPKLEK  253 (309)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~----~~~~~~L~~L~i~~C~~L~~  253 (309)
                      +-           +......+++|..|++..|.-.. +-..    ...+|+|++|+-..+..-..
T Consensus       106 ls-----------tl~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~~~Ea  158 (260)
T KOG2739|consen  106 LS-----------TLRPLKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVDGEEA  158 (260)
T ss_pred             cc-----------ccchhhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhccccccccCCccc
Confidence            21           01356778889999999985333 3221    22678888888777655443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.13  E-value=0.00091  Score=56.20  Aligned_cols=82  Identities=18%  Similarity=0.243  Sum_probs=46.8

Q ss_pred             cccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCceecccCccCCCCCccEEEEEcCccccccccccc
Q 035891          119 LRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEK  198 (309)
Q Consensus       119 l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~  198 (309)
                      +.+.+.|++.+| .+.++.+  +.          .++.|+.|.++-|++..+..+.+++.|++|+|..+ .+.++--   
T Consensus        18 l~~vkKLNcwg~-~L~DIsi--c~----------kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN-~I~sldE---   80 (388)
T KOG2123|consen   18 LENVKKLNCWGC-GLDDISI--CE----------KMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKN-CIESLDE---   80 (388)
T ss_pred             HHHhhhhcccCC-CccHHHH--HH----------hcccceeEEeeccccccchhHHHHHHHHHHHHHhc-ccccHHH---
Confidence            445566666665 4444432  21          46777777777776666656667777777776543 2222210   


Q ss_pred             cCCcCcccccCCccCCccceeeccccc
Q 035891          199 LGEVPSEEMQNLFPFARLESLSLYALG  225 (309)
Q Consensus       199 ~~~~~~~~~~~~~~~~~L~~L~L~~~~  225 (309)
                              ..-+.++|+|+.|.|...|
T Consensus        81 --------L~YLknlpsLr~LWL~ENP   99 (388)
T KOG2123|consen   81 --------LEYLKNLPSLRTLWLDENP   99 (388)
T ss_pred             --------HHHHhcCchhhhHhhccCC
Confidence                    0234567777777776644

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.08  E-value=0.014  Score=27.05  Aligned_cols=16  Identities=38%  Similarity=0.742  Sum_probs=7.9

Q ss_pred             CCcEEecCCCcCCCCCc
Q 035891            6 NLKCLNLEYTYRIYKIP   22 (309)
Q Consensus         6 ~Lr~L~l~~~~~l~~lp   22 (309)
                      +||+|++++| .++.+|
T Consensus         2 ~L~~L~l~~n-~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNN-RLTSLP   17 (17)
T ss_dssp             T-SEEEETSS---SSE-
T ss_pred             ccCEEECCCC-CCCCCc
Confidence            5667777776 566554

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.07  E-value=0.19  Score=37.41  Aligned_cols=75  Identities=16%  Similarity=0.242  Sum_probs=36.5

Q ss_pred             CcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCc--eecccCcc
Q 035891           96 NTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGS--KLRHVTWL  173 (309)
Q Consensus        96 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c--~l~~l~~l  173 (309)
                      +|+.+.+..  .+..+....+..+++|+.+.+..  .+..++...+.          ..++++.+.+.++  .+..- .+
T Consensus        13 ~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~----------~~~~l~~i~~~~~~~~i~~~-~F   77 (129)
T PF13306_consen   13 NLESITFPN--TIKKIGENAFSNCTSLKSINFPN--NLTSIGDNAFS----------NCKSLESITFPNNLKSIGDN-AF   77 (129)
T ss_dssp             T--EEEETS--T--EE-TTTTTT-TT-SEEEESS--TTSCE-TTTTT----------T-TT-EEEEETSTT-EE-TT-TT
T ss_pred             CCCEEEECC--CeeEeChhhcccccccccccccc--cccccceeeee----------cccccccccccccccccccc-cc
Confidence            466666553  45556555666666777777765  36666655543          5556777777543  22221 24


Q ss_pred             CCCCCccEEEEE
Q 035891          174 ILAPNLKHIEVY  185 (309)
Q Consensus       174 ~~l~~L~~L~l~  185 (309)
                      ...++|+.+.+.
T Consensus        78 ~~~~~l~~i~~~   89 (129)
T PF13306_consen   78 SNCTNLKNIDIP   89 (129)
T ss_dssp             TT-TTECEEEET
T ss_pred             cccccccccccC
Confidence            456677777764

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.05  E-value=0.0011  Score=52.98  Aligned_cols=66  Identities=21%  Similarity=0.323  Sum_probs=35.5

Q ss_pred             cccCcceEEEeCc-eecccC--ccC-CCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeecccccccc
Q 035891          153 GFFSLHKVSIWGS-KLRHVT--WLI-LAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLR  228 (309)
Q Consensus       153 ~~~~L~~L~l~~c-~l~~l~--~l~-~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~  228 (309)
                      .++.++.|.+.+| .+.+..  .++ -.|+|+.|+|++|+.+++--.            ..+..|++|+.|.|.+++...
T Consensus       123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL------------~~L~~lknLr~L~l~~l~~v~  190 (221)
T KOG3864|consen  123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL------------ACLLKLKNLRRLHLYDLPYVA  190 (221)
T ss_pred             ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH------------HHHHHhhhhHHHHhcCchhhh
Confidence            4555555555555 443311  111 346666667766666655421            345566666666666665544


Q ss_pred             cc
Q 035891          229 SI  230 (309)
Q Consensus       229 ~l  230 (309)
                      ..
T Consensus       191 ~~  192 (221)
T KOG3864|consen  191 NL  192 (221)
T ss_pred             ch
Confidence            43

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.89  E-value=0.028  Score=29.18  Aligned_cols=22  Identities=27%  Similarity=0.465  Sum_probs=18.1

Q ss_pred             CCCCcEEecCCCcCCCCCchhhh
Q 035891            4 LVNLKCLNLEYTYRIYKIPGQVI   26 (309)
Q Consensus         4 L~~Lr~L~l~~~~~l~~lp~~~i   26 (309)
                      |.+|++|++.+| .++.+|.+++
T Consensus         1 L~~L~~L~L~~N-~l~~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNN-QLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCC-cCCcCCHHHc
Confidence            567899999998 8999988744

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.89  E-value=0.028  Score=29.18  Aligned_cols=22  Identities=27%  Similarity=0.465  Sum_probs=18.1

Q ss_pred             CCCCcEEecCCCcCCCCCchhhh
Q 035891            4 LVNLKCLNLEYTYRIYKIPGQVI   26 (309)
Q Consensus         4 L~~Lr~L~l~~~~~l~~lp~~~i   26 (309)
                      |.+|++|++.+| .++.+|.+++
T Consensus         1 L~~L~~L~L~~N-~l~~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNN-QLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCC-cCCcCCHHHc
Confidence            567899999998 8999988744

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=94.73  E-value=0.011  Score=49.81  Aligned_cols=169  Identities=18%  Similarity=0.186  Sum_probs=80.6

Q ss_pred             CCCcEEecCCCcCCCC-----CchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecch
Q 035891            5 VNLKCLNLEYTYRIYK-----IPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFA   79 (309)
Q Consensus         5 ~~Lr~L~l~~~~~l~~-----lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~   79 (309)
                      ..+..+++++| .+..     +.. .|.+-.+|++.++++-.....-.++  ...-..+.+.+..+++|+..+++.+.+.
T Consensus        30 d~~~evdLSGN-tigtEA~e~l~~-~ia~~~~L~vvnfsd~ftgr~kde~--~~~L~~Ll~aLlkcp~l~~v~LSDNAfg  105 (388)
T COG5238          30 DELVEVDLSGN-TIGTEAMEELCN-VIANVRNLRVVNFSDAFTGRDKDEL--YSNLVMLLKALLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             cceeEEeccCC-cccHHHHHHHHH-HHhhhcceeEeehhhhhhcccHHHH--HHHHHHHHHHHhcCCcceeeeccccccC
Confidence            44566777777 5543     222 2445556666655543221000000  0001223455667788888888876554


Q ss_pred             --hhhhhcCCcCccccCCCcCeEEEecCCCCCeecccC-------------ccccccCCEEEEecCCCCceEEcCccCcc
Q 035891           80 --ALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFT-------------LASLRHLEALDMTNCKDLEEMEIDYAGEE  144 (309)
Q Consensus        80 --~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~-------------l~~l~~L~~L~l~~~~~l~~l~~~~~~~~  144 (309)
                        ..+.+.....-   .++|++|.+++| .+..+....             .+.-|.|+...+.. +.++.-+...... 
T Consensus       106 ~~~~e~L~d~is~---~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr-NRlengs~~~~a~-  179 (388)
T COG5238         106 SEFPEELGDLISS---STDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR-NRLENGSKELSAA-  179 (388)
T ss_pred             cccchHHHHHHhc---CCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc-chhccCcHHHHHH-
Confidence              22223222111   237888888885 333332111             12345666665554 3443332211100 


Q ss_pred             cccCCCcccccCcceEEEeCcee--cccC-----ccCCCCCccEEEEEcCc
Q 035891          145 VKRIRETHGFFSLHKVSIWGSKL--RHVT-----WLILAPNLKHIEVYNCR  188 (309)
Q Consensus       145 ~~~~~~~~~~~~L~~L~l~~c~l--~~l~-----~l~~l~~L~~L~l~~c~  188 (309)
                           ....-.+|+.+.|..|.+  +.+.     .+..+.+|+.|+|.++.
T Consensus       180 -----~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt  225 (388)
T COG5238         180 -----LLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT  225 (388)
T ss_pred             -----HHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc
Confidence                 000124777777776622  2111     24456777777777664

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.43  E-value=0.37  Score=35.78  Aligned_cols=111  Identities=16%  Similarity=0.223  Sum_probs=58.1

Q ss_pred             cCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCceecccC--ccCCCCCccEEEEEcCcccc
Q 035891          114 FTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVT--WLILAPNLKHIEVYNCRYLD  191 (309)
Q Consensus       114 ~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l~--~l~~l~~L~~L~l~~c~~l~  191 (309)
                      ..+..+.+|+.+.+..  .++.++...+.          .+.+|+.+.+.+. +..++  .+...++|+.+.+.+  .+.
T Consensus         6 ~~F~~~~~l~~i~~~~--~~~~I~~~~F~----------~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~   70 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN--TIKKIGENAFS----------NCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLK   70 (129)
T ss_dssp             TTTTT-TT--EEEETS--T--EE-TTTTT----------T-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-
T ss_pred             HHHhCCCCCCEEEECC--CeeEeChhhcc----------ccccccccccccc-ccccceeeeecccccccccccc--ccc
Confidence            4567777899888874  68888877665          6778999998875 33333  356677899999954  344


Q ss_pred             ccccccccCCcCcccccCCccCCccceeeccccccccccCCCccCCCCccEEeecCcccCCCCC
Q 035891          192 EIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALPFPHLKELEVNLCPKLEKLP  255 (309)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp  255 (309)
                      .+..            ..+..+++|+.+.+..  .++.+....+.-..|+.+.+..  .++.++
T Consensus        71 ~i~~------------~~F~~~~~l~~i~~~~--~~~~i~~~~f~~~~l~~i~~~~--~~~~i~  118 (129)
T PF13306_consen   71 SIGD------------NAFSNCTNLKNIDIPS--NITEIGSSSFSNCNLKEINIPS--NITKIE  118 (129)
T ss_dssp             EE-T------------TTTTT-TTECEEEETT--T-BEEHTTTTTT-T--EEE-TT--B-SS--
T ss_pred             cccc------------ccccccccccccccCc--cccEEchhhhcCCCceEEEECC--CccEEC
Confidence            3432            3456678888888864  3666666555333777776653  444443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=91.97  E-value=0.0094  Score=45.00  Aligned_cols=13  Identities=8%  Similarity=0.097  Sum_probs=6.2

Q ss_pred             cccCcceEEEeCc
Q 035891          153 GFFSLHKVSIWGS  165 (309)
Q Consensus       153 ~~~~L~~L~l~~c  165 (309)
                      .++.|+.|+++.|
T Consensus        98 am~aLr~lNl~~N  110 (177)
T KOG4579|consen   98 AMPALRSLNLRFN  110 (177)
T ss_pred             hhHHhhhcccccC
Confidence            3444444444444

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=91.96  E-value=0.14  Score=43.26  Aligned_cols=147  Identities=11%  Similarity=0.035  Sum_probs=76.6

Q ss_pred             hcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchh---------hhhhcCCcCccccCCC
Q 035891           26 ISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAA---------LHRLLTSPSLQSIFSN   96 (309)
Q Consensus        26 i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~---------l~~~~~~~~l~~~l~~   96 (309)
                      +-+|++||..++++|.+..-        -.+.+..-+.+-..|+.|.+.+++...         +..++...+... -|.
T Consensus        88 Llkcp~l~~v~LSDNAfg~~--------~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~-kp~  158 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSE--------FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAAD-KPK  158 (388)
T ss_pred             HhcCCcceeeeccccccCcc--------cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhcc-CCC
Confidence            56788888888888877511        012222335566778888887766442         122222222222 345


Q ss_pred             cCeEEEecCCCCCeeccc----CccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCceecccC-
Q 035891           97 TPSLCLRNCHSLSSLSVF----TLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVT-  171 (309)
Q Consensus        97 L~~L~l~~~~~l~~~~~~----~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l~-  171 (309)
                      |+.....+ +.+.+.+..    .+..-.+|+.+.|.. +.++.-+.......+     ...+.+|+.|++..|-++... 
T Consensus       159 Le~vicgr-NRlengs~~~~a~~l~sh~~lk~vki~q-NgIrpegv~~L~~~g-----l~y~~~LevLDlqDNtft~~gS  231 (388)
T COG5238         159 LEVVICGR-NRLENGSKELSAALLESHENLKEVKIQQ-NGIRPEGVTMLAFLG-----LFYSHSLEVLDLQDNTFTLEGS  231 (388)
T ss_pred             ceEEEecc-chhccCcHHHHHHHHHhhcCceeEEeee-cCcCcchhHHHHHHH-----HHHhCcceeeeccccchhhhhH
Confidence            77666555 444444311    233335778887776 455443322110000     004678888888877322211 


Q ss_pred             -----ccCCCCCccEEEEEcCc
Q 035891          172 -----WLILAPNLKHIEVYNCR  188 (309)
Q Consensus       172 -----~l~~l~~L~~L~l~~c~  188 (309)
                           .+..-+.|..|.+.+|-
T Consensus       232 ~~La~al~~W~~lrEL~lnDCl  253 (388)
T COG5238         232 RYLADALCEWNLLRELRLNDCL  253 (388)
T ss_pred             HHHHHHhcccchhhhccccchh
Confidence                 11222557888888873

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=89.04  E-value=0.26  Score=25.47  Aligned_cols=17  Identities=29%  Similarity=0.763  Sum_probs=12.8

Q ss_pred             CCCccEEeecCcccCCC
Q 035891          237 FPHLKELEVNLCPKLEK  253 (309)
Q Consensus       237 ~~~L~~L~i~~C~~L~~  253 (309)
                      +++|+.|++++|++++.
T Consensus         1 c~~L~~L~l~~C~~itD   17 (26)
T smart00367        1 CPNLRELDLSGCTNITD   17 (26)
T ss_pred             CCCCCEeCCCCCCCcCH
Confidence            46788888888887753

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=81.97  E-value=0.44  Score=24.01  Aligned_cols=13  Identities=23%  Similarity=0.138  Sum_probs=6.1

Q ss_pred             CCCceEEecccCC
Q 035891           30 KMLEALRMFKCGS   42 (309)
Q Consensus        30 ~~L~~L~l~~~~~   42 (309)
                      ++|++|++++|.+
T Consensus         2 ~~L~~L~l~~n~i   14 (24)
T PF13516_consen    2 PNLETLDLSNNQI   14 (24)
T ss_dssp             TT-SEEE-TSSBE
T ss_pred             CCCCEEEccCCcC
Confidence            4555555555554

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	309
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-04

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 43.7 bits (103), Expect = 4e-05
 Identities = 27/155 (17%), Positives = 52/155 (33%), Gaps = 30/155 (19%)

Query: 1   LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVE 60
           L     L+ L+LE   R+       ++    L  L +  C      S+  L      L+ 
Sbjct: 114 LSQCSKLQNLSLEGL-RLSDPIVNTLAKNSNLVRLNLSGC---SGFSEFAL----QTLLS 165

Query: 61  ELLGLERLNV-----------------LTITLQS--FAALHRLLTSPSLQSIFSNTPSL- 100
               L+ LN+                 ++ T+     +   + L    L ++    P+L 
Sbjct: 166 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 225

Query: 101 --CLRNCHSLSSLSVFTLASLRHLEALDMTNCKDL 133
              L +   L +        L +L+ L ++ C D+
Sbjct: 226 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI 260

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 29/257 (11%), Positives = 74/257 (28%), Gaps = 33/257 (12%)

Query: 6   NLKCLNLEYTYRI-YKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLG 64
           +L+ L L+            ++++ + ++ L M +   S+++   +          E+L 
Sbjct: 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLN 198

Query: 65  LERLNVLTITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEA 124
                   I+ +    + R     SL S       + + +   L  +  F  A       
Sbjct: 199 FYMTEFAKISPKDLETIAR--NCRSLVS-------VKVGDFEILELVGFFKAA------- 242

Query: 125 LDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVTWLI-LAPNLKHIE 183
               N ++     ++      ++         L ++ +       +  L   A  ++ ++
Sbjct: 243 ---ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLD 299

Query: 184 VYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALPFPHLKEL 243
           +       E                 +     LE L    +   R +   A     LK L
Sbjct: 300 LLYALLETEDH------------CTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL 347

Query: 244 EVNLCPKLEKLPFDCTS 260
            +      + +  +   
Sbjct: 348 RIERGADEQGMEDEEGL 364

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 39.6 bits (93), Expect = 9e-04
 Identities = 24/137 (17%), Positives = 44/137 (32%), Gaps = 9/137 (6%)

Query: 4   LVNLKCLNLEYTYRIYKIPGQVISNLKMLEALR----MFKCGSSKQESDSILFGGSLVLV 59
            + L  L L   +    I    + NL  L   R     FK   + +  +  +  G   + 
Sbjct: 203 GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262

Query: 60  EELLGLERLNVLTITLQSFAALHRL----LTSPSLQSIFSNTPSLCLRNCH-SLSSLSVF 114
            +   L   N  +  +  F  L  +    L   S++ +         ++       L  F
Sbjct: 263 IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQF 322

Query: 115 TLASLRHLEALDMTNCK 131
               L  L++L +T  K
Sbjct: 323 PTLDLPFLKSLTLTMNK 339

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	309
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.91
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.84
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.83
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.83
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.81
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.81
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.8
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.79
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.78
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.78
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.77
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.77
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.77
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.77
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.76
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.76
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.75
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.75
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.75
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.74
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.74
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.74
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.74
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.74
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.73
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.73
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.73
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.73
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.73
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.73
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.72
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.72
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.71
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.71
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.71
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.71
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.7
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.69
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.69
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.69
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.69
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.69
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.68
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.68
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.68
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.68
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.68
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.68
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.68
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.68
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.68
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.67
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.67
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.67
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.66
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.66
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.64
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.64
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.64
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.64
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.63
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.63
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.62
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.62
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.62
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.62
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.62
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.62
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.61
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.61
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.61
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.61
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.6
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.58
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.58
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.56
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.56
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.55
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.55
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.55
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.54
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.54
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.54
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.53
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.5
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.49
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.49
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.48
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.48
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.46
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.46
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.46
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.44
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.44
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.44
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.42
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.42
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.39
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.39
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.34
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.34
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.34
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.33
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.32
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.32
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.3
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.29
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.28
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.26
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.25
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.24
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.24
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.23
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.19
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.18
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.16
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.16
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.13
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.12
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.11
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.03
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.01
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.96
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.93
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.92
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.89
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.86
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.85
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.84
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.83
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.81
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.8
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.78
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.76
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.75
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.75
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.61
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.6
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.58
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.52
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.49
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.47
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.46
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.26
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.21
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.13
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.08
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.02
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.85
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.58
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.49
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.48
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.37
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.26
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.05
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.01
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.82
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.32
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.56
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	91.51
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	86.82

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.91  E-value=2.5e-23  Score=182.69  Aligned_cols=229  Identities=20%  Similarity=0.246  Sum_probs=186.9

Q ss_pred             CCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhh
Q 035891            4 LVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHR   83 (309)
Q Consensus         4 L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~   83 (309)
                      ..++++|+++++ .++.+|.. ++++++|++|++++|.+.             .++..++.+++|+.|+++.+....++.
T Consensus        80 ~~~l~~L~L~~n-~l~~lp~~-l~~l~~L~~L~L~~n~l~-------------~lp~~~~~l~~L~~L~Ls~n~l~~lp~  144 (328)
T 4fcg_A           80 QPGRVALELRSV-PLPQFPDQ-AFRLSHLQHMTIDAAGLM-------------ELPDTMQQFAGLETLTLARNPLRALPA  144 (328)
T ss_dssp             STTCCEEEEESS-CCSSCCSC-GGGGTTCSEEEEESSCCC-------------CCCSCGGGGTTCSEEEEESCCCCCCCG
T ss_pred             ccceeEEEccCC-CchhcChh-hhhCCCCCEEECCCCCcc-------------chhHHHhccCCCCEEECCCCccccCcH
Confidence            478999999999 99999998 889999999999999984             556778899999999999877665543


Q ss_pred             hcCCcCccccCCCcCeEEEecCCCCCeeccc--------CccccccCCEEEEecCCCCceEEcCccCcccccCCCccccc
Q 035891           84 LLTSPSLQSIFSNTPSLCLRNCHSLSSLSVF--------TLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFF  155 (309)
Q Consensus        84 ~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~--------~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~  155 (309)
                      ...  .    +++|+.|++++|+....++..        .+..+++|+.|++++ +.+..++..+.           .++
T Consensus       145 ~l~--~----l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~-n~l~~lp~~l~-----------~l~  206 (328)
T 4fcg_A          145 SIA--S----LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW-TGIRSLPASIA-----------NLQ  206 (328)
T ss_dssp             GGG--G----CTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEE-ECCCCCCGGGG-----------GCT
T ss_pred             HHh--c----CcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcC-CCcCcchHhhc-----------CCC
Confidence            211  2    457999999999888877632        134589999999999 46777765443           789


Q ss_pred             CcceEEEeCceecccC-ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCc
Q 035891          156 SLHKVSIWGSKLRHVT-WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKA  234 (309)
Q Consensus       156 ~L~~L~l~~c~l~~l~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~  234 (309)
                      +|+.|++++|++..++ .++.+++|++|++++|...+.++             ..++.+++|++|++++|+.++.++...
T Consensus       207 ~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p-------------~~~~~l~~L~~L~L~~n~~~~~~p~~~  273 (328)
T 4fcg_A          207 NLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYP-------------PIFGGRAPLKRLILKDCSNLLTLPLDI  273 (328)
T ss_dssp             TCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCC-------------CCTTCCCCCCEEECTTCTTCCBCCTTG
T ss_pred             CCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhH-------------HHhcCCCCCCEEECCCCCchhhcchhh
Confidence            9999999999777776 57789999999999998777765             567889999999999998899999888


Q ss_pred             cCCCCccEEeecCcccCCCCCCCCCCCCCcceEEEcchhccccce
Q 035891          235 LPFPHLKELEVNLCPKLEKLPFDCTSGQERKLIIKGQEKWWNNLQ  279 (309)
Q Consensus       235 ~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~~~~~~~~~l~  279 (309)
                      ..+++|+.|++++|+.+..+|..+..+ ..++.+.........+.
T Consensus       274 ~~l~~L~~L~L~~n~~~~~iP~~l~~L-~~L~~l~l~~~~~~~l~  317 (328)
T 4fcg_A          274 HRLTQLEKLDLRGCVNLSRLPSLIAQL-PANCIILVPPHLQAQLD  317 (328)
T ss_dssp             GGCTTCCEEECTTCTTCCCCCGGGGGS-CTTCEEECCGGGSCC--
T ss_pred             hcCCCCCEEeCCCCCchhhccHHHhhc-cCceEEeCCHHHHHHHh
Confidence            899999999999999999999988877 66666665555544443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.84  E-value=2.1e-20  Score=164.05  Aligned_cols=203  Identities=22%  Similarity=0.262  Sum_probs=164.0

Q ss_pred             CCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecch-h
Q 035891            2 KYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFA-A   80 (309)
Q Consensus         2 ~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~-~   80 (309)
                      +++.+|++|++++| .+..+|.. ++++++|++|++++|.+.             .++..++.+++|+.|+++.+... .
T Consensus       101 ~~l~~L~~L~L~~n-~l~~lp~~-~~~l~~L~~L~Ls~n~l~-------------~lp~~l~~l~~L~~L~L~~n~~~~~  165 (328)
T 4fcg_A          101 FRLSHLQHMTIDAA-GLMELPDT-MQQFAGLETLTLARNPLR-------------ALPASIASLNRLRELSIRACPELTE  165 (328)
T ss_dssp             GGGTTCSEEEEESS-CCCCCCSC-GGGGTTCSEEEEESCCCC-------------CCCGGGGGCTTCCEEEEEEETTCCC
T ss_pred             hhCCCCCEEECCCC-CccchhHH-HhccCCCCEEECCCCccc-------------cCcHHHhcCcCCCEEECCCCCCccc
Confidence            56889999999999 88999987 899999999999999984             56778999999999999875432 2


Q ss_pred             hhhhcCC----cCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccC
Q 035891           81 LHRLLTS----PSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFS  156 (309)
Q Consensus        81 l~~~~~~----~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~  156 (309)
                      ++.....    ..+.+ +++|+.|+++++ .++.++ ..+..+++|+.|++++ +.+..++..+.           .+++
T Consensus       166 ~p~~~~~~~~~~~~~~-l~~L~~L~L~~n-~l~~lp-~~l~~l~~L~~L~L~~-N~l~~l~~~l~-----------~l~~  230 (328)
T 4fcg_A          166 LPEPLASTDASGEHQG-LVNLQSLRLEWT-GIRSLP-ASIANLQNLKSLKIRN-SPLSALGPAIH-----------HLPK  230 (328)
T ss_dssp             CCSCSEEEC-CCCEEE-STTCCEEEEEEE-CCCCCC-GGGGGCTTCCEEEEES-SCCCCCCGGGG-----------GCTT
T ss_pred             cChhHhhccchhhhcc-CCCCCEEECcCC-CcCcch-HhhcCCCCCCEEEccC-CCCCcCchhhc-----------cCCC
Confidence            2221100    01111 558999999996 455666 4688899999999999 46777665433           7899


Q ss_pred             cceEEEeCc-eecccC-ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCc
Q 035891          157 LHKVSIWGS-KLRHVT-WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKA  234 (309)
Q Consensus       157 L~~L~l~~c-~l~~l~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~  234 (309)
                      |+.|++++| ....+| .++.+++|++|++++|...+.++             ..+..+++|++|++++|+.++.+|...
T Consensus       231 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p-------------~~~~~l~~L~~L~L~~n~~~~~iP~~l  297 (328)
T 4fcg_A          231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP-------------LDIHRLTQLEKLDLRGCVNLSRLPSLI  297 (328)
T ss_dssp             CCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC-------------TTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred             CCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc-------------hhhhcCCCCCEEeCCCCCchhhccHHH
Confidence            999999999 555555 57889999999999998887776             467899999999999999999999988


Q ss_pred             cCCCCccEEeecC
Q 035891          235 LPFPHLKELEVNL  247 (309)
Q Consensus       235 ~~~~~L~~L~i~~  247 (309)
                      ..+++|+.+.+..
T Consensus       298 ~~L~~L~~l~l~~  310 (328)
T 4fcg_A          298 AQLPANCIILVPP  310 (328)
T ss_dssp             GGSCTTCEEECCG
T ss_pred             hhccCceEEeCCH
Confidence            8999999998875

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.83  E-value=1.5e-19  Score=164.87  Aligned_cols=221  Identities=20%  Similarity=0.237  Sum_probs=174.1

Q ss_pred             CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhh
Q 035891            5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRL   84 (309)
Q Consensus         5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~   84 (309)
                      .++++|++++| .++.++...+.++++|++|++++|.+.            ...+..+..+++|+.|+++.+....++.-
T Consensus        64 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~------------~i~~~~~~~l~~L~~L~L~~n~l~~~~~~  130 (440)
T 3zyj_A           64 TNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIR------------TIEIGAFNGLANLNTLELFDNRLTTIPNG  130 (440)
T ss_dssp             TTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCCC------------EECGGGGTTCSSCCEEECCSSCCSSCCTT
T ss_pred             CCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcCC------------ccChhhccCCccCCEEECCCCcCCeeCHh
Confidence            56899999999 899887666999999999999999986            44557788999999999987665544321


Q ss_pred             cCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeC
Q 035891           85 LTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWG  164 (309)
Q Consensus        85 ~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  164 (309)
                      . ...    +++|+.|+++++ .+..++...+..+++|+.|++++++.+..++...+.          .+++|+.|++++
T Consensus       131 ~-~~~----l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~----------~l~~L~~L~L~~  194 (440)
T 3zyj_A          131 A-FVY----LSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE----------GLSNLRYLNLAM  194 (440)
T ss_dssp             T-SCS----CSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTT----------TCSSCCEEECTT
T ss_pred             H-hhc----cccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhh----------cccccCeecCCC
Confidence            0 112    457999999985 567777567889999999999999999998876665          789999999999


Q ss_pred             ceecccCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCcc-CCCCccEE
Q 035891          165 SKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKAL-PFPHLKEL  243 (309)
Q Consensus       165 c~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~-~~~~L~~L  243 (309)
                      |+++.+|.+..+++|++|++++| .++.+.+            ..+..+++|++|++.++ .++.+....+ .+++|+.|
T Consensus       195 n~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~------------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L  260 (440)
T 3zyj_A          195 CNLREIPNLTPLIKLDELDLSGN-HLSAIRP------------GSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEI  260 (440)
T ss_dssp             SCCSSCCCCTTCSSCCEEECTTS-CCCEECT------------TTTTTCTTCCEEECTTC-CCCEECTTSSTTCTTCCEE
T ss_pred             CcCccccccCCCcccCEEECCCC-ccCccCh------------hhhccCccCCEEECCCC-ceeEEChhhhcCCCCCCEE
Confidence            98888888889999999999988 4555543            46788999999999985 6777766544 78999999


Q ss_pred             eecCcccCCCCCCCCCCCCCcceEEE
Q 035891          244 EVNLCPKLEKLPFDCTSGQERKLIIK  269 (309)
Q Consensus       244 ~i~~C~~L~~lp~~~~~~~~~l~~~~  269 (309)
                      +++++ +++.+|...-..-..++.+.
T Consensus       261 ~L~~N-~l~~~~~~~~~~l~~L~~L~  285 (440)
T 3zyj_A          261 NLAHN-NLTLLPHDLFTPLHHLERIH  285 (440)
T ss_dssp             ECTTS-CCCCCCTTTTSSCTTCCEEE
T ss_pred             ECCCC-CCCccChhHhccccCCCEEE
Confidence            99997 78887764322114444443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.83  E-value=1.2e-19  Score=166.13  Aligned_cols=221  Identities=21%  Similarity=0.263  Sum_probs=173.5

Q ss_pred             CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhh
Q 035891            5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRL   84 (309)
Q Consensus         5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~   84 (309)
                      .+|++|++++| .++.++.+.++++++|++|++++|.+.            ...+..+..+++|+.|+++.+....++.-
T Consensus        75 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  141 (452)
T 3zyi_A           75 SNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIR------------QIEVGAFNGLASLNTLELFDNWLTVIPSG  141 (452)
T ss_dssp             TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCC------------EECTTTTTTCTTCCEEECCSSCCSBCCTT
T ss_pred             CCccEEECcCC-cCceECHHHcCCCCCCCEEECCCCccC------------CcChhhccCcccCCEEECCCCcCCccChh
Confidence            57999999999 898886555999999999999999986            44556788999999999987665544321


Q ss_pred             cCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeC
Q 035891           85 LTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWG  164 (309)
Q Consensus        85 ~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  164 (309)
                      .    +.. +++|+.|+++++ .+..++...+..+++|+.|++++|+.++.++...+.          .+++|+.|++++
T Consensus       142 ~----~~~-l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~----------~l~~L~~L~L~~  205 (452)
T 3zyi_A          142 A----FEY-LSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE----------GLFNLKYLNLGM  205 (452)
T ss_dssp             T----SSS-CTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTT----------TCTTCCEEECTT
T ss_pred             h----hcc-cCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhcc----------CCCCCCEEECCC
Confidence            1    111 457999999995 567777567889999999999999999999877665          789999999999


Q ss_pred             ceecccCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCcc-CCCCccEE
Q 035891          165 SKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKAL-PFPHLKEL  243 (309)
Q Consensus       165 c~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~-~~~~L~~L  243 (309)
                      |++..+|.+..+++|++|++++|. ++.+.+            ..+..+++|+.|++.++ .++.+....+ .+++|+.|
T Consensus       206 n~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~------------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L  271 (452)
T 3zyi_A          206 CNIKDMPNLTPLVGLEELEMSGNH-FPEIRP------------GSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVEL  271 (452)
T ss_dssp             SCCSSCCCCTTCTTCCEEECTTSC-CSEECG------------GGGTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEE
T ss_pred             CcccccccccccccccEEECcCCc-CcccCc------------ccccCccCCCEEEeCCC-cCceECHHHhcCCCCCCEE
Confidence            988888888899999999999874 555533            46778899999999985 6777755444 78999999


Q ss_pred             eecCcccCCCCCCCCCCCCCcceEEE
Q 035891          244 EVNLCPKLEKLPFDCTSGQERKLIIK  269 (309)
Q Consensus       244 ~i~~C~~L~~lp~~~~~~~~~l~~~~  269 (309)
                      +++++ +++.+|...-.....++.+.
T Consensus       272 ~L~~N-~l~~~~~~~~~~l~~L~~L~  296 (452)
T 3zyi_A          272 NLAHN-NLSSLPHDLFTPLRYLVELH  296 (452)
T ss_dssp             ECCSS-CCSCCCTTSSTTCTTCCEEE
T ss_pred             ECCCC-cCCccChHHhccccCCCEEE
Confidence            99997 78888764322114444443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.81  E-value=1.7e-18  Score=159.37  Aligned_cols=224  Identities=17%  Similarity=0.177  Sum_probs=123.7

Q ss_pred             CCCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCc----------cccCC--cccchhhhhccCCC
Q 035891            1 LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDS----------ILFGG--SLVLVEELLGLERL   68 (309)
Q Consensus         1 l~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~----------~l~~~--~~~~~~~l~~L~~L   68 (309)
                      |+++++|++|++++| .+..++.+.++++++|++|++++|.+..++.++          ++...  ....+..+..+++|
T Consensus        52 ~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L  130 (477)
T 2id5_A           52 FASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL  130 (477)
T ss_dssp             TTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             ccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccC
Confidence            345666777777766 666553333666667777777666665554321          11110  12223445666666


Q ss_pred             ceEEEEEecchhhhhhcCCcCccccCCCcCeEEEecCC-----------------------CCCeecccCccccccCCEE
Q 035891           69 NVLTITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCH-----------------------SLSSLSVFTLASLRHLEAL  125 (309)
Q Consensus        69 ~~L~l~~~~~~~l~~~~~~~~l~~~l~~L~~L~l~~~~-----------------------~l~~~~~~~l~~l~~L~~L  125 (309)
                      +.|++..+....+...    .+.+ +++|+.|+++++.                       .+..++...+..+++|+.|
T Consensus       131 ~~L~l~~n~l~~~~~~----~~~~-l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L  205 (477)
T 2id5_A          131 KSLEVGDNDLVYISHR----AFSG-LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVL  205 (477)
T ss_dssp             CEEEECCTTCCEECTT----SSTT-CTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEE
T ss_pred             CEEECCCCccceeChh----hccC-CCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCccccee
Confidence            6666654433322110    0111 2345555555532                       2222222234444455555


Q ss_pred             EEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCceecccC--ccCCCCCccEEEEEcCccccccccccccCCcC
Q 035891          126 DMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVP  203 (309)
Q Consensus       126 ~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~  203 (309)
                      ++++++.+..++....           ...+|+.|++++|+++.++  .+..+++|++|++++|. ++.+..        
T Consensus       206 ~l~~~~~~~~~~~~~~-----------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~--------  265 (477)
T 2id5_A          206 EISHWPYLDTMTPNCL-----------YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEG--------  265 (477)
T ss_dssp             EEECCTTCCEECTTTT-----------TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC-CCEECT--------
T ss_pred             eCCCCccccccCcccc-----------cCccccEEECcCCcccccCHHHhcCccccCeeECCCCc-CCccCh--------
Confidence            5555444444443332           3347777777777666665  35667778888887764 444432        


Q ss_pred             cccccCCccCCccceeeccccccccccCCC-ccCCCCccEEeecCcccCCCCCC
Q 035891          204 SEEMQNLFPFARLESLSLYALGNLRSIYPK-ALPFPHLKELEVNLCPKLEKLPF  256 (309)
Q Consensus       204 ~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~-~~~~~~L~~L~i~~C~~L~~lp~  256 (309)
                          ..+..+++|+.|.+.++ .++.+... ...+++|+.|++++| +++.+|.
T Consensus       266 ----~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~  313 (477)
T 2id5_A          266 ----SMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEE  313 (477)
T ss_dssp             ----TSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSS-CCSCCCG
T ss_pred             ----hhccccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCC-cCceeCH
Confidence                34667788888888885 56666443 337888888888886 6766664

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.81  E-value=3.5e-19  Score=162.43  Aligned_cols=204  Identities=18%  Similarity=0.216  Sum_probs=163.9

Q ss_pred             CCCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchh
Q 035891            1 LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAA   80 (309)
Q Consensus         1 l~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~   80 (309)
                      |+++.+|++|++++| .+..++.+.+.++++|++|++++|.+.            ......+..+++|+.|+++.+....
T Consensus        84 ~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~------------~~~~~~~~~l~~L~~L~L~~N~i~~  150 (440)
T 3zyj_A           84 FKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNRLT------------TIPNGAFVYLSKLKELWLRNNPIES  150 (440)
T ss_dssp             TSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSSCCS------------SCCTTTSCSCSSCCEEECCSCCCCE
T ss_pred             hhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCCcCC------------eeCHhHhhccccCceeeCCCCcccc
Confidence            568899999999999 899988767999999999999999986            3333457889999999998776654


Q ss_pred             hhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceE
Q 035891           81 LHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKV  160 (309)
Q Consensus        81 l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L  160 (309)
                      ++... ...    +++|+.|++++++.+..++...+..+++|+.|++++ +.+..++.  ..          .+++|+.|
T Consensus       151 ~~~~~-~~~----l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~--~~----------~l~~L~~L  212 (440)
T 3zyj_A          151 IPSYA-FNR----IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM-CNLREIPN--LT----------PLIKLDEL  212 (440)
T ss_dssp             ECTTT-TTT----CTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT-SCCSSCCC--CT----------TCSSCCEE
T ss_pred             cCHHH-hhh----CcccCEeCCCCCCCcceeCcchhhcccccCeecCCC-CcCccccc--cC----------CCcccCEE
Confidence            43211 112    457999999999999998866788999999999998 46776652  22          78999999


Q ss_pred             EEeCceecccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCcc-CC
Q 035891          161 SIWGSKLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKAL-PF  237 (309)
Q Consensus       161 ~l~~c~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~-~~  237 (309)
                      ++++|.+..++  .+..+++|++|++++| .++.+..            ..+..+++|+.|+|+++ .++.++...+ .+
T Consensus       213 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l  278 (440)
T 3zyj_A          213 DLSGNHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIER------------NAFDNLQSLVEINLAHN-NLTLLPHDLFTPL  278 (440)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECT------------TSSTTCTTCCEEECTTS-CCCCCCTTTTSSC
T ss_pred             ECCCCccCccChhhhccCccCCEEECCCC-ceeEECh------------hhhcCCCCCCEEECCCC-CCCccChhHhccc
Confidence            99999666653  5778899999999887 4555543            46788999999999995 7888887654 78


Q ss_pred             CCccEEeecCcc
Q 035891          238 PHLKELEVNLCP  249 (309)
Q Consensus       238 ~~L~~L~i~~C~  249 (309)
                      ++|+.|++.++|
T Consensus       279 ~~L~~L~L~~Np  290 (440)
T 3zyj_A          279 HHLERIHLHHNP  290 (440)
T ss_dssp             TTCCEEECCSSC
T ss_pred             cCCCEEEcCCCC
Confidence            999999998754

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.80  E-value=5.4e-19  Score=161.73  Aligned_cols=204  Identities=20%  Similarity=0.215  Sum_probs=163.2

Q ss_pred             CCCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchh
Q 035891            1 LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAA   80 (309)
Q Consensus         1 l~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~   80 (309)
                      |+++.+|++|++++| .++.++.+.+.++++|++|++++|.+.            ......+..+++|+.|+++.+....
T Consensus        95 ~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~------------~~~~~~~~~l~~L~~L~L~~N~l~~  161 (452)
T 3zyi_A           95 FRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNWLT------------VIPSGAFEYLSKLRELWLRNNPIES  161 (452)
T ss_dssp             TTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCS------------BCCTTTSSSCTTCCEEECCSCCCCE
T ss_pred             cCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCcCC------------ccChhhhcccCCCCEEECCCCCcce
Confidence            578999999999999 899887666999999999999999986            3333457889999999998776654


Q ss_pred             hhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceE
Q 035891           81 LHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKV  160 (309)
Q Consensus        81 l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L  160 (309)
                      ++... ...    +++|+.|++++|+.+..++...+..+++|+.|++++ +.+..++.  ..          .+++|+.|
T Consensus       162 ~~~~~-~~~----l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~--~~----------~l~~L~~L  223 (452)
T 3zyi_A          162 IPSYA-FNR----VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM-CNIKDMPN--LT----------PLVGLEEL  223 (452)
T ss_dssp             ECTTT-TTT----CTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT-SCCSSCCC--CT----------TCTTCCEE
T ss_pred             eCHhH-Hhc----CCcccEEeCCCCCCccccChhhccCCCCCCEEECCC-Cccccccc--cc----------ccccccEE
Confidence            43211 112    557999999999999999866788999999999998 46776642  22          78999999


Q ss_pred             EEeCceecccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCcc-CC
Q 035891          161 SIWGSKLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKAL-PF  237 (309)
Q Consensus       161 ~l~~c~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~-~~  237 (309)
                      ++++|.+..++  .+..+++|++|++++|. +..+..            ..+..+++|+.|+++++ .++.++...+ .+
T Consensus       224 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l  289 (452)
T 3zyi_A          224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ-VSLIER------------NAFDGLASLVELNLAHN-NLSSLPHDLFTPL  289 (452)
T ss_dssp             ECTTSCCSEECGGGGTTCTTCCEEECTTSC-CCEECT------------TTTTTCTTCCEEECCSS-CCSCCCTTSSTTC
T ss_pred             ECcCCcCcccCcccccCccCCCEEEeCCCc-CceECH------------HHhcCCCCCCEEECCCC-cCCccChHHhccc
Confidence            99999666654  57789999999998874 555533            46788999999999996 7888887654 78


Q ss_pred             CCccEEeecCcc
Q 035891          238 PHLKELEVNLCP  249 (309)
Q Consensus       238 ~~L~~L~i~~C~  249 (309)
                      ++|+.|++.++|
T Consensus       290 ~~L~~L~L~~Np  301 (452)
T 3zyi_A          290 RYLVELHLHHNP  301 (452)
T ss_dssp             TTCCEEECCSSC
T ss_pred             cCCCEEEccCCC
Confidence            999999998764

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.79  E-value=5e-19  Score=156.73  Aligned_cols=166  Identities=18%  Similarity=0.189  Sum_probs=75.9

Q ss_pred             CCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCc----------cccCC-cccch-hhhhccCCCceEEE
Q 035891            6 NLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDS----------ILFGG-SLVLV-EELLGLERLNVLTI   73 (309)
Q Consensus         6 ~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~----------~l~~~-~~~~~-~~l~~L~~L~~L~l   73 (309)
                      +|++|++++| .++.+|.+.+.++++|++|++++|.+...+++.          ++... -...+ ..++.+++|+.|++
T Consensus        53 ~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  131 (353)
T 2z80_A           53 AVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL  131 (353)
T ss_dssp             TCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred             cCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence            5667777776 666666544666777777777766665221110          00000 01111 12444455555544


Q ss_pred             EEecchhhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCccc
Q 035891           74 TLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHG  153 (309)
Q Consensus        74 ~~~~~~~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~  153 (309)
                      +.+....++.......    +++|+.|++++++.+..++...+..+++|+.|++++ +.+..+......          .
T Consensus       132 ~~n~l~~l~~~~~~~~----l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~----------~  196 (353)
T 2z80_A          132 LGNPYKTLGETSLFSH----LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA-SDLQSYEPKSLK----------S  196 (353)
T ss_dssp             TTCCCSSSCSSCSCTT----CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE-TTCCEECTTTTT----------T
T ss_pred             CCCCCcccCchhhhcc----CCCCcEEECCCCccccccCHHHccCCCCCCEEECCC-CCcCccCHHHHh----------c
Confidence            4333222221000111    234555555554444444333444455555555555 234444333222          4


Q ss_pred             ccCcceEEEeCceecccC--ccCCCCCccEEEEEcC
Q 035891          154 FFSLHKVSIWGSKLRHVT--WLILAPNLKHIEVYNC  187 (309)
Q Consensus       154 ~~~L~~L~l~~c~l~~l~--~l~~l~~L~~L~l~~c  187 (309)
                      +++|++|++++|.+..++  ....+++|++|++++|
T Consensus       197 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n  232 (353)
T 2z80_A          197 IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT  232 (353)
T ss_dssp             CSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESC
T ss_pred             cccCCeecCCCCccccchhhhhhhcccccEEECCCC
Confidence            555666666555443333  1223556666666655

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.78  E-value=3e-18  Score=157.72  Aligned_cols=207  Identities=19%  Similarity=0.234  Sum_probs=152.7

Q ss_pred             CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhh
Q 035891            5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRL   84 (309)
Q Consensus         5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~   84 (309)
                      .++++|++++| .++.++.+.+.++++|++|++++|.+.            ...+..+..+++|+.|+++.+....++..
T Consensus        32 ~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~   98 (477)
T 2id5_A           32 TETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVS------------AVEPGAFNNLFNLRTLGLRSNRLKLIPLG   98 (477)
T ss_dssp             TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCC------------EECTTTTTTCTTCCEEECCSSCCCSCCTT
T ss_pred             CCCcEEECCCC-ccceECHhHccCCCCCCEEECCCCccC------------EeChhhhhCCccCCEEECCCCcCCccCcc
Confidence            57999999999 899886555999999999999999986            45567788999999999976655544321


Q ss_pred             cCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeC
Q 035891           85 LTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWG  164 (309)
Q Consensus        85 ~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  164 (309)
                      .    +.. +++|+.|+++++. +..+....+..+++|+.|++++ +.+..+....+.          .+++|+.|++++
T Consensus        99 ~----~~~-l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~----------~l~~L~~L~l~~  161 (477)
T 2id5_A           99 V----FTG-LSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGD-NDLVYISHRAFS----------GLNSLEQLTLEK  161 (477)
T ss_dssp             S----STT-CTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEECC-TTCCEECTTSST----------TCTTCCEEEEES
T ss_pred             c----ccC-CCCCCEEECCCCc-cccCChhHccccccCCEEECCC-CccceeChhhcc----------CCCCCCEEECCC
Confidence            0    111 4579999999854 4555445678889999999998 577777665554          688899999998


Q ss_pred             ceecccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCccCCCCccE
Q 035891          165 SKLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALPFPHLKE  242 (309)
Q Consensus       165 c~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~  242 (309)
                      |++..++  .+..+++|+.|+++++. +..+..            ..+..+++|++|++.+++.+..++.......+|++
T Consensus       162 n~l~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~------------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  228 (477)
T 2id5_A          162 CNLTSIPTEALSHLHGLIVLRLRHLN-INAIRD------------YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTS  228 (477)
T ss_dssp             CCCSSCCHHHHTTCTTCCEEEEESCC-CCEECT------------TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSE
T ss_pred             CcCcccChhHhcccCCCcEEeCCCCc-CcEeCh------------hhcccCcccceeeCCCCccccccCcccccCccccE
Confidence            8777766  36778888888888874 444432            35667777888888777777777666666667777


Q ss_pred             EeecCcccCCCCC
Q 035891          243 LEVNLCPKLEKLP  255 (309)
Q Consensus       243 L~i~~C~~L~~lp  255 (309)
                      |++++| +++.+|
T Consensus       229 L~l~~n-~l~~~~  240 (477)
T 2id5_A          229 LSITHC-NLTAVP  240 (477)
T ss_dssp             EEEESS-CCCSCC
T ss_pred             EECcCC-cccccC
Confidence            777766 455555

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.78  E-value=9.9e-19  Score=156.88  Aligned_cols=164  Identities=16%  Similarity=0.214  Sum_probs=78.9

Q ss_pred             CCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhh
Q 035891            4 LVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHR   83 (309)
Q Consensus         4 L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~   83 (309)
                      +++|++|++++| .++.+|...++.+++|++|++++|.+.            ...+..++.+++|+.|+++.+....++.
T Consensus        68 l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~------------~~~~~~~~~l~~L~~L~L~~n~l~~l~~  134 (390)
T 3o6n_A           68 FRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIR------------YLPPHVFQNVPLLTVLVLERNDLSSLPR  134 (390)
T ss_dssp             CCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCC------------CCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             cccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCC------------cCCHHHhcCCCCCCEEECCCCccCcCCH
Confidence            445555555555 555544433555555555555555554            2223345566666666665444333222


Q ss_pred             hcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcc-------------------
Q 035891           84 LLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEE-------------------  144 (309)
Q Consensus        84 ~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~-------------------  144 (309)
                      .. ...    +++|+.|+++++. +..++...+..+++|+.|+++++ .+..++......+                   
T Consensus       135 ~~-~~~----l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L  207 (390)
T 3o6n_A          135 GI-FHN----TPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSN-RLTHVDLSLIPSLFHANVSYNLLSTLAIPIAV  207 (390)
T ss_dssp             TT-TTT----CTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSS-CCSBCCGGGCTTCSEEECCSSCCSEEECCSSC
T ss_pred             HH-hcC----CCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCC-cCCccccccccccceeecccccccccCCCCcc
Confidence            10 001    3346666666532 33333233455555555555552 2322221111000                   


Q ss_pred             ---------cccCCCcccccCcceEEEeCceecccCccCCCCCccEEEEEcCc
Q 035891          145 ---------VKRIRETHGFFSLHKVSIWGSKLRHVTWLILAPNLKHIEVYNCR  188 (309)
Q Consensus       145 ---------~~~~~~~~~~~~L~~L~l~~c~l~~l~~l~~l~~L~~L~l~~c~  188 (309)
                               -...+.. .+++|+.|++++|++...+++..+++|++|++++|.
T Consensus       208 ~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~  259 (390)
T 3o6n_A          208 EELDASHNSINVVRGP-VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE  259 (390)
T ss_dssp             SEEECCSSCCCEEECC-CCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC
T ss_pred             eEEECCCCeeeecccc-ccccccEEECCCCCCcccHHHcCCCCccEEECCCCc
Confidence                     0000011 345677777777755555566677777777777763

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.77  E-value=2.2e-18  Score=148.00  Aligned_cols=200  Identities=19%  Similarity=0.226  Sum_probs=94.9

Q ss_pred             CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEec-chhhhh
Q 035891            5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQS-FAALHR   83 (309)
Q Consensus         5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~-~~~l~~   83 (309)
                      .+|++|++++| .++.+|.+.+.++++|++|++++|.+.            ...+..+..+++|+.|+++.+. ...+..
T Consensus        32 ~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~------------~~~~~~~~~l~~L~~L~l~~n~~l~~~~~   98 (285)
T 1ozn_A           32 AASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLA------------RIDAAAFTGLALLEQLDLSDNAQLRSVDP   98 (285)
T ss_dssp             TTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCC------------EECTTTTTTCTTCCEEECCSCTTCCCCCT
T ss_pred             CCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccc------------eeCHhhcCCccCCCEEeCCCCCCccccCH
Confidence            34555555555 555555433555555666666555553            2233445555555555554332 222110


Q ss_pred             hcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEe
Q 035891           84 LLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIW  163 (309)
Q Consensus        84 ~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~  163 (309)
                      . ....    +++|+.|+++++. +..++...+..+++|+.|++++ +.+..++.....          .+++|+.|+++
T Consensus        99 ~-~~~~----l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~----------~l~~L~~L~l~  161 (285)
T 1ozn_A           99 A-TFHG----LGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQD-NALQALPDDTFR----------DLGNLTHLFLH  161 (285)
T ss_dssp             T-TTTT----CTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTT----------TCTTCCEEECC
T ss_pred             H-HhcC----CcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCC-CcccccCHhHhc----------cCCCccEEECC
Confidence            0 0001    2245555555533 2333223345555555555555 344444433332          45555666665


Q ss_pred             CceecccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCC-ccCCCCc
Q 035891          164 GSKLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPK-ALPFPHL  240 (309)
Q Consensus       164 ~c~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~-~~~~~~L  240 (309)
                      +|++..++  .+..+++|++|++++|. +..+.+            ..+..+++|+.|+++++ .++.++.. ...+++|
T Consensus       162 ~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~------------~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L  227 (285)
T 1ozn_A          162 GNRISSVPERAFRGLHSLDRLLLHQNR-VAHVHP------------HAFRDLGRLMTLYLFAN-NLSALPTEALAPLRAL  227 (285)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSC-CCEECT------------TTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTC
T ss_pred             CCcccccCHHHhcCccccCEEECCCCc-ccccCH------------hHccCcccccEeeCCCC-cCCcCCHHHcccCccc
Confidence            55444443  24445555666655543 222221            33445555666666553 44444432 2245555


Q ss_pred             cEEeecCc
Q 035891          241 KELEVNLC  248 (309)
Q Consensus       241 ~~L~i~~C  248 (309)
                      +.|+++++
T Consensus       228 ~~L~l~~N  235 (285)
T 1ozn_A          228 QYLRLNDN  235 (285)
T ss_dssp             CEEECCSS
T ss_pred             CEEeccCC
Confidence            55555554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.77  E-value=3.8e-18  Score=147.99  Aligned_cols=222  Identities=17%  Similarity=0.216  Sum_probs=162.2

Q ss_pred             CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhh
Q 035891            5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRL   84 (309)
Q Consensus         5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~   84 (309)
                      .+|++|++++| .++.+|.+++.++++|++|++++|.+...          ...+..+..+++|+.|+++.+....++..
T Consensus        28 ~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~----------~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~   96 (306)
T 2z66_A           28 SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFK----------GCCSQSDFGTTSLKYLDLSFNGVITMSSN   96 (306)
T ss_dssp             TTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEE----------EEEEHHHHSCSCCCEEECCSCSEEEEEEE
T ss_pred             CCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCcc----------cCcccccccccccCEEECCCCccccChhh
Confidence            57999999999 89999988789999999999999988521          12246677899999999987766544432


Q ss_pred             cCCcCccccCCCcCeEEEecCCCCCeecc-cCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEe
Q 035891           85 LTSPSLQSIFSNTPSLCLRNCHSLSSLSV-FTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIW  163 (309)
Q Consensus        85 ~~~~~l~~~l~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~  163 (309)
                      .  ..    +++|+.|+++++. +..++. ..+..+++|+.|+++++ .+.........          .+++|+.|+++
T Consensus        97 ~--~~----l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~----------~l~~L~~L~l~  158 (306)
T 2z66_A           97 F--LG----LEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFN----------GLSSLEVLKMA  158 (306)
T ss_dssp             E--ET----CTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTS-CCEECSTTTTT----------TCTTCCEEECT
T ss_pred             c--CC----CCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCC-cCCccchhhcc----------cCcCCCEEECC
Confidence            1  11    4479999999853 444432 35778899999999984 56655544443          68999999999


Q ss_pred             Cceecc--cC-ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCc-cCCCC
Q 035891          164 GSKLRH--VT-WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKA-LPFPH  239 (309)
Q Consensus       164 ~c~l~~--l~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~-~~~~~  239 (309)
                      +|.+..  +| .+..+++|++|++++|. ++.+.+            ..+..+++|++|+++++ .++.++... ..+++
T Consensus       159 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~  224 (306)
T 2z66_A          159 GNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSP------------TAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNS  224 (306)
T ss_dssp             TCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECT------------TTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTT
T ss_pred             CCccccccchhHHhhCcCCCEEECCCCC-cCCcCH------------HHhcCCCCCCEEECCCC-ccCccChhhccCccc
Confidence            996654  34 57788999999999884 555532            46778999999999996 677776533 47899


Q ss_pred             ccEEeecCcccCCCCCCCCCCCCCcceEEE
Q 035891          240 LKELEVNLCPKLEKLPFDCTSGQERKLIIK  269 (309)
Q Consensus       240 L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~  269 (309)
                      |+.|++++|.--...|......+..++.+.
T Consensus       225 L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~  254 (306)
T 2z66_A          225 LQVLDYSLNHIMTSKKQELQHFPSSLAFLN  254 (306)
T ss_dssp             CCEEECTTSCCCBCSSSSCCCCCTTCCEEE
T ss_pred             CCEeECCCCCCcccCHHHHHhhhccCCEEE
Confidence            999999998443334554444433455444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.77  E-value=1.6e-18  Score=151.30  Aligned_cols=199  Identities=16%  Similarity=0.124  Sum_probs=112.2

Q ss_pred             CCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhh
Q 035891            3 YLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALH   82 (309)
Q Consensus         3 ~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~   82 (309)
                      .+.+|++|++++| .++.++.+.++++++|++|++++|.+.             ..+. +..+++|+.|+++.+....++
T Consensus        32 ~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~-------------~~~~-~~~l~~L~~L~Ls~n~l~~l~   96 (317)
T 3o53_A           32 SAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLY-------------ETLD-LESLSTLRTLDLNNNYVQELL   96 (317)
T ss_dssp             TGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCE-------------EEEE-ETTCTTCCEEECCSSEEEEEE
T ss_pred             cCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCC-------------cchh-hhhcCCCCEEECcCCcccccc
Confidence            4568999999999 899887656999999999999999985             2222 788899999998766554433


Q ss_pred             hhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEE
Q 035891           83 RLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSI  162 (309)
Q Consensus        83 ~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l  162 (309)
                      ..          ++|+.|+++++ .+..++.   ..+++|+.|++++ +.+..++.....          .+++|+.|++
T Consensus        97 ~~----------~~L~~L~l~~n-~l~~~~~---~~~~~L~~L~l~~-N~l~~~~~~~~~----------~l~~L~~L~L  151 (317)
T 3o53_A           97 VG----------PSIETLHAANN-NISRVSC---SRGQGKKNIYLAN-NKITMLRDLDEG----------CRSRVQYLDL  151 (317)
T ss_dssp             EC----------TTCCEEECCSS-CCSEEEE---CCCSSCEEEECCS-SCCCSGGGBCTG----------GGSSEEEEEC
T ss_pred             CC----------CCcCEEECCCC-ccCCcCc---cccCCCCEEECCC-CCCCCccchhhh----------ccCCCCEEEC
Confidence            21          14666666653 2333321   1234555565555 344443332222          4555555555


Q ss_pred             eCceecccC--cc-CCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCccCCCC
Q 035891          163 WGSKLRHVT--WL-ILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALPFPH  239 (309)
Q Consensus       163 ~~c~l~~l~--~l-~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~  239 (309)
                      ++|.+..++  .+ ..+++|++|++++|. ++.+.              ....+++|++|+++++ .++.++.....+++
T Consensus       152 s~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~--------------~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~  215 (317)
T 3o53_A          152 KLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVK--------------GQVVFAKLKTLDLSSN-KLAFMGPEFQSAAG  215 (317)
T ss_dssp             TTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEE--------------CCCCCTTCCEEECCSS-CCCEECGGGGGGTT
T ss_pred             CCCCCCcccHHHHhhccCcCCEEECCCCc-Ccccc--------------cccccccCCEEECCCC-cCCcchhhhcccCc
Confidence            555333321  11 234555555555542 33331              1223555555555553 44445444444555


Q ss_pred             ccEEeecCcccCCCCCCCC
Q 035891          240 LKELEVNLCPKLEKLPFDC  258 (309)
Q Consensus       240 L~~L~i~~C~~L~~lp~~~  258 (309)
                      |+.|++++| +++.+|...
T Consensus       216 L~~L~L~~N-~l~~l~~~~  233 (317)
T 3o53_A          216 VTWISLRNN-KLVLIEKAL  233 (317)
T ss_dssp             CSEEECTTS-CCCEECTTC
T ss_pred             ccEEECcCC-cccchhhHh
Confidence            555555554 444444433

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.77  E-value=6e-18  Score=141.57  Aligned_cols=200  Identities=16%  Similarity=0.181  Sum_probs=142.1

Q ss_pred             CCcEEecCCCcCCCCCchhhhcCCCCCceEEecccC-CCCccCCccccCCcccchhhhhccCCCceEEEEE-ecchhhhh
Q 035891            6 NLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCG-SSKQESDSILFGGSLVLVEELLGLERLNVLTITL-QSFAALHR   83 (309)
Q Consensus         6 ~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~-~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~-~~~~~l~~   83 (309)
                      +|++|++++| .++.+|.+.++.+++|++|++++|. +.            ......+..+++|+.|+++. +....++.
T Consensus        32 ~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~------------~i~~~~f~~l~~L~~L~l~~~n~l~~i~~   98 (239)
T 2xwt_C           32 STQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQ------------QLESHSFYNLSKVTHIEIRNTRNLTYIDP   98 (239)
T ss_dssp             TCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCC------------EECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred             cccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcc------------eeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence            6889999998 8888887668889999999999887 64            22334577888999999886 55554432


Q ss_pred             hcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCC---EEEEecCCCCceEEcCccCcccccCCCcccccCcc-e
Q 035891           84 LLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLE---ALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLH-K  159 (309)
Q Consensus        84 ~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~---~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~-~  159 (309)
                      .    .+.+ +++|+.|+++++. ++.++  .+..+++|+   .|+++++..++.++...+.          .+++|+ .
T Consensus        99 ~----~f~~-l~~L~~L~l~~n~-l~~lp--~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~----------~l~~L~~~  160 (239)
T 2xwt_C           99 D----ALKE-LPLLKFLGIFNTG-LKMFP--DLTKVYSTDIFFILEITDNPYMTSIPVNAFQ----------GLCNETLT  160 (239)
T ss_dssp             T----SEEC-CTTCCEEEEEEEC-CCSCC--CCTTCCBCCSEEEEEEESCTTCCEECTTTTT----------TTBSSEEE
T ss_pred             H----HhCC-CCCCCEEeCCCCC-Ccccc--ccccccccccccEEECCCCcchhhcCccccc----------chhcceeE
Confidence            1    1111 4478889998854 45554  266667777   8899885478888776554          688888 9


Q ss_pred             EEEeCceecccCc-cCCCCCccEEEEEcCccccccccccccCCcCcccccCCccC-CccceeeccccccccccCCCccCC
Q 035891          160 VSIWGSKLRHVTW-LILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPF-ARLESLSLYALGNLRSIYPKALPF  237 (309)
Q Consensus       160 L~l~~c~l~~l~~-l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~L~~~~~L~~l~~~~~~~  237 (309)
                      |++++|+++.++. ....++|++|++++|..++.++.            ..+..+ ++|+.|++++ +.++.++..  .+
T Consensus       161 L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~------------~~~~~l~~~L~~L~l~~-N~l~~l~~~--~~  225 (239)
T 2xwt_C          161 LKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDK------------DAFGGVYSGPSLLDVSQ-TSVTALPSK--GL  225 (239)
T ss_dssp             EECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECT------------TTTTTCSBCCSEEECTT-CCCCCCCCT--TC
T ss_pred             EEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCH------------HHhhccccCCcEEECCC-CccccCChh--Hh
Confidence            9998886666652 12237888899988765666653            345667 8899999988 467777754  67


Q ss_pred             CCccEEeecCcccC
Q 035891          238 PHLKELEVNLCPKL  251 (309)
Q Consensus       238 ~~L~~L~i~~C~~L  251 (309)
                      ++|+.|++.+++.|
T Consensus       226 ~~L~~L~l~~~~~l  239 (239)
T 2xwt_C          226 EHLKELIARNTWTL  239 (239)
T ss_dssp             TTCSEEECTTC---
T ss_pred             ccCceeeccCccCC
Confidence            88888888887654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.76  E-value=9.6e-18  Score=147.06  Aligned_cols=212  Identities=15%  Similarity=0.124  Sum_probs=120.8

Q ss_pred             CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhh
Q 035891            5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRL   84 (309)
Q Consensus         5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~   84 (309)
                      .+|++|++++| .++.+|.+.++++++|++|++++|.+.            ...+..++.+++|+.|+++.+....++..
T Consensus        52 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~------------~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~  118 (330)
T 1xku_A           52 PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKIS------------KISPGAFAPLVKLERLYLSKNQLKELPEK  118 (330)
T ss_dssp             TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCC------------CBCTTTTTTCTTCCEEECCSSCCSBCCSS
T ss_pred             CCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCC------------eeCHHHhcCCCCCCEEECCCCcCCccChh
Confidence            46788888888 788777655788888888888888875            34466677888888888876654433321


Q ss_pred             cCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCce--EEcCccCc-------------ccccCC
Q 035891           85 LTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEE--MEIDYAGE-------------EVKRIR  149 (309)
Q Consensus        85 ~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~--l~~~~~~~-------------~~~~~~  149 (309)
                      .        .++|+.|+++++ .+..++...+..+++|+.|+++++ .+..  +.......             ... ++
T Consensus       119 ~--------~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~  187 (330)
T 1xku_A          119 M--------PKTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTN-PLKSSGIENGAFQGMKKLSYIRIADTNITT-IP  187 (330)
T ss_dssp             C--------CTTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSS-CCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CC
T ss_pred             h--------cccccEEECCCC-cccccCHhHhcCCccccEEECCCC-cCCccCcChhhccCCCCcCEEECCCCcccc-CC
Confidence            1        115666666664 333443234555666666666653 2221  11111110             000 00


Q ss_pred             CcccccCcceEEEeCceecccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccc
Q 035891          150 ETHGFFSLHKVSIWGSKLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNL  227 (309)
Q Consensus       150 ~~~~~~~L~~L~l~~c~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L  227 (309)
                      .. .+++|+.|++++|++..++  .+..+++|++|++++|. ++.+..            ..+..+++|++|+++++ .+
T Consensus       188 ~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~------------~~~~~l~~L~~L~L~~N-~l  252 (330)
T 1xku_A          188 QG-LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDN------------GSLANTPHLRELHLNNN-KL  252 (330)
T ss_dssp             SS-CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEECT------------TTGGGSTTCCEEECCSS-CC
T ss_pred             cc-ccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CceeCh------------hhccCCCCCCEEECCCC-cC
Confidence            00 2345555555555333332  34455566666665543 333321            24556777777777775 56


Q ss_pred             cccCCCccCCCCccEEeecCcccCCCCCC
Q 035891          228 RSIYPKALPFPHLKELEVNLCPKLEKLPF  256 (309)
Q Consensus       228 ~~l~~~~~~~~~L~~L~i~~C~~L~~lp~  256 (309)
                      +.++.....+++|++|++++| .++.+|.
T Consensus       253 ~~lp~~l~~l~~L~~L~l~~N-~i~~~~~  280 (330)
T 1xku_A          253 VKVPGGLADHKYIQVVYLHNN-NISAIGS  280 (330)
T ss_dssp             SSCCTTTTTCSSCCEEECCSS-CCCCCCT
T ss_pred             ccCChhhccCCCcCEEECCCC-cCCccCh
Confidence            677666667777777777776 5666654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.76  E-value=5.2e-18  Score=146.15  Aligned_cols=198  Identities=19%  Similarity=0.180  Sum_probs=160.2

Q ss_pred             CCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhh
Q 035891            2 KYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAAL   81 (309)
Q Consensus         2 ~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l   81 (309)
                      +++.+++.++++++ .++.+|.+ +.  +++++|++++|.+.            ...+..+..+++|+.|+++.+....+
T Consensus         7 ~~l~~l~~l~~~~~-~l~~ip~~-~~--~~l~~L~L~~N~l~------------~~~~~~~~~l~~L~~L~L~~n~l~~~   70 (290)
T 1p9a_G            7 SKVASHLEVNCDKR-NLTALPPD-LP--KDTTILHLSENLLY------------TFSLATLMPYTRLTQLNLDRAELTKL   70 (290)
T ss_dssp             ECSTTCCEEECTTS-CCSSCCSC-CC--TTCCEEECTTSCCS------------EEEGGGGTTCTTCCEEECTTSCCCEE
T ss_pred             cccCCccEEECCCC-CCCcCCCC-CC--CCCCEEEcCCCcCC------------ccCHHHhhcCCCCCEEECCCCccCcc
Confidence            57889999999999 99999987 43  78999999999996            55567789999999999976665554


Q ss_pred             hhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEE
Q 035891           82 HRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVS  161 (309)
Q Consensus        82 ~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~  161 (309)
                      +..   ..    +++|+.|+++++ .+..++ ..+..+++|+.|++++ +.++.++...+.          .+++|+.|+
T Consensus        71 ~~~---~~----l~~L~~L~Ls~N-~l~~l~-~~~~~l~~L~~L~l~~-N~l~~l~~~~~~----------~l~~L~~L~  130 (290)
T 1p9a_G           71 QVD---GT----LPVLGTLDLSHN-QLQSLP-LLGQTLPALTVLDVSF-NRLTSLPLGALR----------GLGELQELY  130 (290)
T ss_dssp             ECC---SC----CTTCCEEECCSS-CCSSCC-CCTTTCTTCCEEECCS-SCCCCCCSSTTT----------TCTTCCEEE
T ss_pred             cCC---CC----CCcCCEEECCCC-cCCcCc-hhhccCCCCCEEECCC-CcCcccCHHHHc----------CCCCCCEEE
Confidence            432   22    457999999985 566665 4567889999999998 678888766554          789999999


Q ss_pred             EeCceecccCc--cCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCccCCCC
Q 035891          162 IWGSKLRHVTW--LILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALPFPH  239 (309)
Q Consensus       162 l~~c~l~~l~~--l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~  239 (309)
                      +++|++..++.  +..+++|+.|++++| .++.++.            ..+..+++|++|+++++ .++.++...+..++
T Consensus       131 L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~------------~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~  196 (290)
T 1p9a_G          131 LKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPA------------GLLNGLENLDTLLLQEN-SLYTIPKGFFGSHL  196 (290)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECTTS-CCSCCCT------------TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCC
T ss_pred             CCCCCCCccChhhcccccCCCEEECCCC-cCCccCH------------HHhcCcCCCCEEECCCC-cCCccChhhccccc
Confidence            99997777763  567899999999887 4666653            34577999999999995 79999998888899


Q ss_pred             ccEEeecCcc
Q 035891          240 LKELEVNLCP  249 (309)
Q Consensus       240 L~~L~i~~C~  249 (309)
                      |+.+++.+.|
T Consensus       197 L~~l~L~~Np  206 (290)
T 1p9a_G          197 LPFAFLHGNP  206 (290)
T ss_dssp             CSEEECCSCC
T ss_pred             CCeEEeCCCC
Confidence            9999998754

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.75  E-value=1.2e-17  Score=147.93  Aligned_cols=226  Identities=15%  Similarity=0.121  Sum_probs=122.4

Q ss_pred             CcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCC-c---------cccCC--cccchhhhhccCCCceEEEE
Q 035891            7 LKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESD-S---------ILFGG--SLVLVEELLGLERLNVLTIT   74 (309)
Q Consensus         7 Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~-~---------~l~~~--~~~~~~~l~~L~~L~~L~l~   74 (309)
                      ....+.+++ .++.+|.+ +.  ++|++|++++|.+...+.+ +         ++...  ....+..+..+++|++|+++
T Consensus        33 ~~~c~~~~~-~l~~iP~~-~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (353)
T 2z80_A           33 NGICKGSSG-SLNSIPSG-LT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS  108 (353)
T ss_dssp             TSEEECCST-TCSSCCTT-CC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CeEeeCCCC-Cccccccc-cc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence            456788888 89999986 44  5899999999999754431 1         11111  11122335555555555555


Q ss_pred             Eecchhhhhh-cCCcCccccCCCcCeEEEecCCCCCeecc-cCccccccCCEEEEecCCCCceEEcCccCcccccCCCcc
Q 035891           75 LQSFAALHRL-LTSPSLQSIFSNTPSLCLRNCHSLSSLSV-FTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETH  152 (309)
Q Consensus        75 ~~~~~~l~~~-~~~~~l~~~l~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~  152 (309)
                      .+....++.. ..  .    +++|+.|+++++ .+..++. ..+..+++|+.|++++++.+..++.....          
T Consensus       109 ~n~l~~~~~~~~~--~----l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~----------  171 (353)
T 2z80_A          109 YNYLSNLSSSWFK--P----LSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA----------  171 (353)
T ss_dssp             SSCCSSCCHHHHT--T----CTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT----------
T ss_pred             CCcCCcCCHhHhC--C----CccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHcc----------
Confidence            4443332221 00  1    224666666653 3344442 24555666666666665445555444333          


Q ss_pred             cccCcceEEEeCceeccc-C-ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeecccccccccc
Q 035891          153 GFFSLHKVSIWGSKLRHV-T-WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSI  230 (309)
Q Consensus       153 ~~~~L~~L~l~~c~l~~l-~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l  230 (309)
                      .+++|++|++++|++..+ + .+..+++|++|++++|. ++.++.            .....+++|+.|+++++ .++.+
T Consensus       172 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~------------~~~~~~~~L~~L~L~~n-~l~~~  237 (353)
T 2z80_A          172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLE------------IFVDVTSSVECLELRDT-DLDTF  237 (353)
T ss_dssp             TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC-STTHHH------------HHHHHTTTEEEEEEESC-BCTTC
T ss_pred             CCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc-cccchh------------hhhhhcccccEEECCCC-ccccc
Confidence            566666666666643333 1 34556666666666653 232221            11233566666666654 34332


Q ss_pred             CC--------------------------------CccCCCCccEEeecCcccCCCCCCCC-CCCCCcceEEE
Q 035891          231 YP--------------------------------KALPFPHLKELEVNLCPKLEKLPFDC-TSGQERKLIIK  269 (309)
Q Consensus       231 ~~--------------------------------~~~~~~~L~~L~i~~C~~L~~lp~~~-~~~~~~l~~~~  269 (309)
                      +.                                ....+++|++|++++| +++.+|... ... ..++.+.
T Consensus       238 ~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l-~~L~~L~  307 (353)
T 2z80_A          238 HFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRL-TSLQKIW  307 (353)
T ss_dssp             CCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTC-TTCCEEE
T ss_pred             cccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcC-CCCCEEE
Confidence            21                                1235778888888887 677777654 333 4455443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.75  E-value=5.2e-18  Score=160.49  Aligned_cols=229  Identities=16%  Similarity=0.186  Sum_probs=110.6

Q ss_pred             CCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhh
Q 035891            3 YLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALH   82 (309)
Q Consensus         3 ~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~   82 (309)
                      ++++|++|++++| .+..+|...++.+++|++|++++|.+.            ...+..++.+++|+.|+++.+....++
T Consensus        73 ~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~------------~~~~~~~~~l~~L~~L~L~~n~l~~l~  139 (597)
T 3oja_B           73 SFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIR------------YLPPHVFQNVPLLTVLVLERNDLSSLP  139 (597)
T ss_dssp             HCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCC------------CCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             cCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCC------------CCCHHHHcCCCCCCEEEeeCCCCCCCC
Confidence            3556666666666 566555433666666666666666664            222334556666666666544443322


Q ss_pred             hhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCccc-----------------
Q 035891           83 RLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEV-----------------  145 (309)
Q Consensus        83 ~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~-----------------  145 (309)
                      ... +..    +++|+.|+++++. +..++...+..+++|+.|+++++ .+..++......+.                 
T Consensus       140 ~~~-~~~----l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~  212 (597)
T 3oja_B          140 RGI-FHN----TPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSN-RLTHVDLSLIPSLFHANVSYNLLSTLAIPIA  212 (597)
T ss_dssp             TTT-TTT----CTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTS-CCSBCCGGGCTTCSEEECCSSCCSEEECCTT
T ss_pred             HHH-hcc----CCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCC-CCCCcChhhhhhhhhhhcccCccccccCCch
Confidence            210 001    3356666666542 33333234555555666665552 33322211111000                 


Q ss_pred             -----------ccCCCcccccCcceEEEeCceecccCccCCCCCccEEEEEcCcccccccccc-ccCC------cC---c
Q 035891          146 -----------KRIRETHGFFSLHKVSIWGSKLRHVTWLILAPNLKHIEVYNCRYLDEIISLE-KLGE------VP---S  204 (309)
Q Consensus       146 -----------~~~~~~~~~~~L~~L~l~~c~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~-~~~~------~~---~  204 (309)
                                 ..++.. .+++|+.|++++|.+...+++..+++|++|++++|. +..+++.. ....      ..   .
T Consensus       213 L~~L~ls~n~l~~~~~~-~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l  290 (597)
T 3oja_B          213 VEELDASHNSINVVRGP-VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRL  290 (597)
T ss_dssp             CSEEECCSSCCCEEECS-CCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECTTSCC
T ss_pred             hheeeccCCcccccccc-cCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCc-cCCCCHHHhcCccCCCEEECCCCCC
Confidence                       000001 234566666666655555556667777777777664 33332210 0000      00   0


Q ss_pred             cc-ccCCccCCccceeeccccccccccCCCccCCCCccEEeecCcccCCCCC
Q 035891          205 EE-MQNLFPFARLESLSLYALGNLRSIYPKALPFPHLKELEVNLCPKLEKLP  255 (309)
Q Consensus       205 ~~-~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp  255 (309)
                      .. ......+|+|+.|+++++ .+..++.....+++|+.|++++| .+..+|
T Consensus       291 ~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N-~l~~~~  340 (597)
T 3oja_B          291 VALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN-SIVTLK  340 (597)
T ss_dssp             CEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS-CCCCCC
T ss_pred             CCCCcccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCC-CCCCcC
Confidence            00 022344666666666664 45555555556666677776665 344444

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.75  E-value=1.6e-17  Score=148.99  Aligned_cols=231  Identities=16%  Similarity=0.170  Sum_probs=143.0

Q ss_pred             CCCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCc----------cccCC--cccchhhhhccCCC
Q 035891            1 LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDS----------ILFGG--SLVLVEELLGLERL   68 (309)
Q Consensus         1 l~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~----------~l~~~--~~~~~~~l~~L~~L   68 (309)
                      |+++++|++|++++| .+..+|.+.++++++|++|++++|.+..++.++          ++...  ....+..++.+++|
T Consensus        89 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  167 (390)
T 3o6n_A           89 FAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL  167 (390)
T ss_dssp             TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTC
T ss_pred             ccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCC
Confidence            467788888888888 788776665788888888888888887555432          11110  12223346666777


Q ss_pred             ceEEEEEecchhhhhhcCCcCcc------------ccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceE
Q 035891           69 NVLTITLQSFAALHRLLTSPSLQ------------SIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEM  136 (309)
Q Consensus        69 ~~L~l~~~~~~~l~~~~~~~~l~------------~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l  136 (309)
                      +.|+++.+....+. ......+.            ...++|+.|+++++ .+..++.   ...++|+.|+++++ .+...
T Consensus       168 ~~L~l~~n~l~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n-~l~~~~~---~~~~~L~~L~l~~n-~l~~~  241 (390)
T 3o6n_A          168 QNLQLSSNRLTHVD-LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN-SINVVRG---PVNVELTILKLQHN-NLTDT  241 (390)
T ss_dssp             CEEECCSSCCSBCC-GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSS-CCCEEEC---CCCSSCCEEECCSS-CCCCC
T ss_pred             CEEECCCCcCCccc-cccccccceeecccccccccCCCCcceEEECCCC-eeeeccc---cccccccEEECCCC-CCccc
Confidence            77777655443221 11100000            00123444444442 2233321   12356778888774 45443


Q ss_pred             EcCccCcccccCCCcccccCcceEEEeCceeccc-C-ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCC
Q 035891          137 EIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHV-T-WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFA  214 (309)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l-~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~  214 (309)
                        ....          .+++|+.|++++|.+..+ + .+..+++|++|++++| .++.++             .....++
T Consensus       242 --~~l~----------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~-------------~~~~~l~  295 (390)
T 3o6n_A          242 --AWLL----------NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALN-------------LYGQPIP  295 (390)
T ss_dssp             --GGGG----------GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEE-------------CSSSCCT
T ss_pred             --HHHc----------CCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccC-------------cccCCCC
Confidence              2222          688999999999955554 2 4677899999999887 455553             3456789


Q ss_pred             ccceeeccccccccccCCCccCCCCccEEeecCcccCCCCCCCCCCCCCcceEEE
Q 035891          215 RLESLSLYALGNLRSIYPKALPFPHLKELEVNLCPKLEKLPFDCTSGQERKLIIK  269 (309)
Q Consensus       215 ~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~  269 (309)
                      +|++|+++++ .++.++.....+++|+.|++++| .++.+|..  .. ..++.+.
T Consensus       296 ~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~--~~-~~L~~L~  345 (390)
T 3o6n_A          296 TLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN-SIVTLKLS--TH-HTLKNLT  345 (390)
T ss_dssp             TCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS-CCCCCCCC--TT-CCCSEEE
T ss_pred             CCCEEECCCC-cceecCccccccCcCCEEECCCC-ccceeCch--hh-ccCCEEE
Confidence            9999999986 68788776668899999999997 46666632  22 4455554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.74  E-value=3e-17  Score=150.03  Aligned_cols=100  Identities=20%  Similarity=0.225  Sum_probs=57.4

Q ss_pred             ccCcceEEEeCceecccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccC
Q 035891          154 FFSLHKVSIWGSKLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIY  231 (309)
Q Consensus       154 ~~~L~~L~l~~c~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~  231 (309)
                      +++|+.|++++|++..++  .+..+++|++|++++|. ++.+.+            ..+..+++|++|+++++ .++.+.
T Consensus       298 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~------------~~~~~l~~L~~L~Ls~N-~l~~~~  363 (455)
T 3v47_A          298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-LGSIDS------------RMFENLDKLEVLDLSYN-HIRALG  363 (455)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECG------------GGGTTCTTCCEEECCSS-CCCEEC
T ss_pred             CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc-cCCcCh------------hHhcCcccCCEEECCCC-cccccC
Confidence            445555555555333332  23445555555555542 233321            34567888888888886 566663


Q ss_pred             -CCccCCCCccEEeecCcccCCCCCCCC-CCCCCcceEEE
Q 035891          232 -PKALPFPHLKELEVNLCPKLEKLPFDC-TSGQERKLIIK  269 (309)
Q Consensus       232 -~~~~~~~~L~~L~i~~C~~L~~lp~~~-~~~~~~l~~~~  269 (309)
                       .....+++|++|++++| +++.+|... ... ..++.+.
T Consensus       364 ~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l-~~L~~L~  401 (455)
T 3v47_A          364 DQSFLGLPNLKELALDTN-QLKSVPDGIFDRL-TSLQKIW  401 (455)
T ss_dssp             TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTC-TTCCEEE
T ss_pred             hhhccccccccEEECCCC-ccccCCHhHhccC-CcccEEE
Confidence             34457888888888886 677777643 233 4444443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.74  E-value=2.9e-17  Score=150.16  Aligned_cols=98  Identities=13%  Similarity=0.127  Sum_probs=58.3

Q ss_pred             CcceEEEeCceecccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCC
Q 035891          156 SLHKVSIWGSKLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPK  233 (309)
Q Consensus       156 ~L~~L~l~~c~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~  233 (309)
                      +|+.|++++|++..++  .++.+++|++|++++|. +..+++            ..+..+++|++|+++++ .++.+...
T Consensus       276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~------------~~~~~l~~L~~L~Ls~N-~l~~~~~~  341 (455)
T 3v47_A          276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDD------------NAFWGLTHLLKLNLSQN-FLGSIDSR  341 (455)
T ss_dssp             CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECT------------TTTTTCTTCCEEECCSS-CCCEECGG
T ss_pred             CceEEEecCccccccchhhcccCCCCCEEECCCCc-ccccCh------------hHhcCcccCCEEECCCC-ccCCcChh
Confidence            4555555555333321  34556666666666553 333322            35677889999999886 66766543


Q ss_pred             -ccCCCCccEEeecCcccCCCC-CCCCCCCCCcceEEE
Q 035891          234 -ALPFPHLKELEVNLCPKLEKL-PFDCTSGQERKLIIK  269 (309)
Q Consensus       234 -~~~~~~L~~L~i~~C~~L~~l-p~~~~~~~~~l~~~~  269 (309)
                       ...+++|++|++++| ++..+ |...... ..++.+.
T Consensus       342 ~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l-~~L~~L~  377 (455)
T 3v47_A          342 MFENLDKLEVLDLSYN-HIRALGDQSFLGL-PNLKELA  377 (455)
T ss_dssp             GGTTCTTCCEEECCSS-CCCEECTTTTTTC-TTCCEEE
T ss_pred             HhcCcccCCEEECCCC-cccccChhhcccc-ccccEEE
Confidence             347889999999987 45554 5444444 4444443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.74  E-value=1.1e-18  Score=152.16  Aligned_cols=209  Identities=15%  Similarity=0.134  Sum_probs=151.7

Q ss_pred             CCCCCCCcEEecCC-CcCCC-CCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecc
Q 035891            1 LKYLVNLKCLNLEY-TYRIY-KIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSF   78 (309)
Q Consensus         1 l~~L~~Lr~L~l~~-~~~l~-~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~   78 (309)
                      |+++++|++|++++ + .+. .+|.. ++++++|++|++++|.+.            ...+..+..+++|++|+++.+..
T Consensus        72 l~~l~~L~~L~L~~~n-~l~~~~p~~-l~~l~~L~~L~Ls~n~l~------------~~~p~~~~~l~~L~~L~Ls~N~l  137 (313)
T 1ogq_A           72 LANLPYLNFLYIGGIN-NLVGPIPPA-IAKLTQLHYLYITHTNVS------------GAIPDFLSQIKTLVTLDFSYNAL  137 (313)
T ss_dssp             GGGCTTCSEEEEEEET-TEESCCCGG-GGGCTTCSEEEEEEECCE------------EECCGGGGGCTTCCEEECCSSEE
T ss_pred             HhCCCCCCeeeCCCCC-cccccCChh-HhcCCCCCEEECcCCeeC------------CcCCHHHhCCCCCCEEeCCCCcc
Confidence            46789999999995 6 555 68887 999999999999999996            56778899999999999987665


Q ss_pred             h-hhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccc-cCCEEEEecCCCCceEEcCccCcccccCCCcccccC
Q 035891           79 A-ALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLR-HLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFS  156 (309)
Q Consensus        79 ~-~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~-~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~  156 (309)
                      . .++....  .    +++|+.|+++++.....++ ..+..++ +|+.|+++++ .+.........          .+. 
T Consensus       138 ~~~~p~~~~--~----l~~L~~L~L~~N~l~~~~p-~~l~~l~~~L~~L~L~~N-~l~~~~~~~~~----------~l~-  198 (313)
T 1ogq_A          138 SGTLPPSIS--S----LPNLVGITFDGNRISGAIP-DSYGSFSKLFTSMTISRN-RLTGKIPPTFA----------NLN-  198 (313)
T ss_dssp             ESCCCGGGG--G----CTTCCEEECCSSCCEEECC-GGGGCCCTTCCEEECCSS-EEEEECCGGGG----------GCC-
T ss_pred             CCcCChHHh--c----CCCCCeEECcCCcccCcCC-HHHhhhhhcCcEEECcCC-eeeccCChHHh----------CCc-
Confidence            5 2332211  1    4479999999965433454 4667777 8999999984 55533333332          344 


Q ss_pred             cceEEEeCceecccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeecccccccc-ccCCC
Q 035891          157 LHKVSIWGSKLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLR-SIYPK  233 (309)
Q Consensus       157 L~~L~l~~c~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~-~l~~~  233 (309)
                      |+.|++++|.+...+  .+..+++|++|++++|.....+              ..+..+++|++|+++++ .+. .++..
T Consensus       199 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--------------~~~~~l~~L~~L~Ls~N-~l~~~~p~~  263 (313)
T 1ogq_A          199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL--------------GKVGLSKNLNGLDLRNN-RIYGTLPQG  263 (313)
T ss_dssp             CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG--------------GGCCCCTTCCEEECCSS-CCEECCCGG
T ss_pred             ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeec--------------CcccccCCCCEEECcCC-cccCcCChH
Confidence            999999999555433  4677899999999887543333              23567889999999986 454 66666


Q ss_pred             ccCCCCccEEeecCcccCCCCCCC
Q 035891          234 ALPFPHLKELEVNLCPKLEKLPFD  257 (309)
Q Consensus       234 ~~~~~~L~~L~i~~C~~L~~lp~~  257 (309)
                      ...+++|+.|++++|+--..+|..
T Consensus       264 l~~l~~L~~L~Ls~N~l~~~ip~~  287 (313)
T 1ogq_A          264 LTQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             GGGCTTCCEEECCSSEEEEECCCS
T ss_pred             HhcCcCCCEEECcCCcccccCCCC
Confidence            668889999999987444356664

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.74  E-value=1.1e-17  Score=154.45  Aligned_cols=206  Identities=15%  Similarity=0.099  Sum_probs=130.2

Q ss_pred             CCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhh
Q 035891            4 LVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHR   83 (309)
Q Consensus         4 L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~   83 (309)
                      ..+|++|++++| .+..++...++.+++|++|++++|.+.            . .+. +..+++|+.|+++.+....++.
T Consensus        33 ~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~------------~-~~~-l~~l~~L~~L~Ls~N~l~~l~~   97 (487)
T 3oja_A           33 AWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLY------------E-TLD-LESLSTLRTLDLNNNYVQELLV   97 (487)
T ss_dssp             GGGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCE------------E-EEE-CTTCTTCCEEECCSSEEEEEEE
T ss_pred             CCCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCC------------C-Ccc-cccCCCCCEEEecCCcCCCCCC
Confidence            458999999999 898887555999999999999999985            2 222 7788888888887665544332


Q ss_pred             hcCCcCc-------c----ccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcc
Q 035891           84 LLTSPSL-------Q----SIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETH  152 (309)
Q Consensus        84 ~~~~~~l-------~----~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~  152 (309)
                      ...+..+       .    ..+++|+.|+++++. +..++...+..+++|+.|++++ +.+..+.......         
T Consensus        98 ~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~---------  166 (487)
T 3oja_A           98 GPSIETLHAANNNISRVSCSRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKL-NEIDTVNFAELAA---------  166 (487)
T ss_dssp             CTTCCEEECCSSCCCCEEECCCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTT-SCCCEEEGGGGGG---------
T ss_pred             CCCcCEEECcCCcCCCCCccccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCC-CCCCCcChHHHhh---------
Confidence            1110000       0    013345666665533 3333223455666677777766 3555544333211         


Q ss_pred             cccCcceEEEeCceecccCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCC
Q 035891          153 GFFSLHKVSIWGSKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYP  232 (309)
Q Consensus       153 ~~~~L~~L~l~~c~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~  232 (309)
                      .+++|+.|++++|.+..++....+++|++|++++|. +..++             ..+..+++|+.|+++++ .+..++.
T Consensus       167 ~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~-------------~~~~~l~~L~~L~Ls~N-~l~~lp~  231 (487)
T 3oja_A          167 SSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNK-LAFMG-------------PEFQSAAGVTWISLRNN-KLVLIEK  231 (487)
T ss_dssp             GTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSC-CCEEC-------------GGGGGGTTCSEEECTTS-CCCEECT
T ss_pred             hCCcccEEecCCCccccccccccCCCCCEEECCCCC-CCCCC-------------HhHcCCCCccEEEecCC-cCcccch
Confidence            467777777777755555555567777777777663 44443             24566777777777774 5667776


Q ss_pred             CccCCCCccEEeecCccc
Q 035891          233 KALPFPHLKELEVNLCPK  250 (309)
Q Consensus       233 ~~~~~~~L~~L~i~~C~~  250 (309)
                      ....+++|+.|++++|+-
T Consensus       232 ~l~~l~~L~~L~l~~N~l  249 (487)
T 3oja_A          232 ALRFSQNLEHFDLRGNGF  249 (487)
T ss_dssp             TCCCCTTCCEEECTTCCB
T ss_pred             hhccCCCCCEEEcCCCCC
Confidence            666677777777776543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.74  E-value=5.9e-18  Score=147.43  Aligned_cols=215  Identities=15%  Similarity=0.114  Sum_probs=158.8

Q ss_pred             CCCcEEecCCCcCCC---CCchhhhcCCCCCceEEecc-cCCCCccCCccccCCcccchhhhhccCCCceEEEEEecch-
Q 035891            5 VNLKCLNLEYTYRIY---KIPGQVISNLKMLEALRMFK-CGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFA-   79 (309)
Q Consensus         5 ~~Lr~L~l~~~~~l~---~lp~~~i~~L~~L~~L~l~~-~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~-   79 (309)
                      .+++.|+++++ .+.   .+|.. ++++++|++|++++ +.+.            ...+..++.+++|++|+++.+... 
T Consensus        50 ~~l~~L~L~~~-~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~------------~~~p~~l~~l~~L~~L~Ls~n~l~~  115 (313)
T 1ogq_A           50 YRVNNLDLSGL-NLPKPYPIPSS-LANLPYLNFLYIGGINNLV------------GPIPPAIAKLTQLHYLYITHTNVSG  115 (313)
T ss_dssp             CCEEEEEEECC-CCSSCEECCGG-GGGCTTCSEEEEEEETTEE------------SCCCGGGGGCTTCSEEEEEEECCEE
T ss_pred             ceEEEEECCCC-CccCCcccChh-HhCCCCCCeeeCCCCCccc------------ccCChhHhcCCCCCEEECcCCeeCC
Confidence            57999999999 777   58887 99999999999995 7775            567788999999999999988765 


Q ss_pred             hhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCc-eEEcCccCcccccCCCccccc-Cc
Q 035891           80 ALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLE-EMEIDYAGEEVKRIRETHGFF-SL  157 (309)
Q Consensus        80 ~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~-~l~~~~~~~~~~~~~~~~~~~-~L  157 (309)
                      .++....  .    +++|+.|+++++.....++ ..+..+++|+.|+++++ .+. .++..+.           .++ +|
T Consensus       116 ~~p~~~~--~----l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N-~l~~~~p~~l~-----------~l~~~L  176 (313)
T 1ogq_A          116 AIPDFLS--Q----IKTLVTLDFSYNALSGTLP-PSISSLPNLVGITFDGN-RISGAIPDSYG-----------SFSKLF  176 (313)
T ss_dssp             ECCGGGG--G----CTTCCEEECCSSEEESCCC-GGGGGCTTCCEEECCSS-CCEEECCGGGG-----------CCCTTC
T ss_pred             cCCHHHh--C----CCCCCEEeCCCCccCCcCC-hHHhcCCCCCeEECcCC-cccCcCCHHHh-----------hhhhcC
Confidence            3333211  1    4479999999965433444 46788999999999994 565 4554443           455 99


Q ss_pred             ceEEEeCceec-ccC-ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCcc
Q 035891          158 HKVSIWGSKLR-HVT-WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKAL  235 (309)
Q Consensus       158 ~~L~l~~c~l~-~l~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~  235 (309)
                      +.|++++|.+. .+| .+..++ |++|++++|.....++             ..+..+++|++|+++++ .+........
T Consensus       177 ~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~-------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~  241 (313)
T 1ogq_A          177 TSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS-------------VLFGSDKNTQKIHLAKN-SLAFDLGKVG  241 (313)
T ss_dssp             CEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCG-------------GGCCTTSCCSEEECCSS-EECCBGGGCC
T ss_pred             cEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCC-------------HHHhcCCCCCEEECCCC-ceeeecCccc
Confidence            99999999555 344 455565 9999999985433332             46788999999999996 5654444456


Q ss_pred             CCCCccEEeecCcccCCCCCCCCCCCCCcceEE
Q 035891          236 PFPHLKELEVNLCPKLEKLPFDCTSGQERKLII  268 (309)
Q Consensus       236 ~~~~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~  268 (309)
                      .+++|++|++++|.--..+|..+... ..++.+
T Consensus       242 ~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L  273 (313)
T 1ogq_A          242 LSKNLNGLDLRNNRIYGTLPQGLTQL-KFLHSL  273 (313)
T ss_dssp             CCTTCCEEECCSSCCEECCCGGGGGC-TTCCEE
T ss_pred             ccCCCCEEECcCCcccCcCChHHhcC-cCCCEE
Confidence            78999999999984433677665544 444444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.73  E-value=1.2e-17  Score=145.13  Aligned_cols=196  Identities=17%  Similarity=0.215  Sum_probs=156.5

Q ss_pred             CCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhh
Q 035891            3 YLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALH   82 (309)
Q Consensus         3 ~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~   82 (309)
                      ++.+|++|+++++ .+..+|.  +..+++|++|++++|.+.             .... +..+++|+.|+++.+....++
T Consensus        39 ~l~~L~~L~l~~~-~i~~l~~--~~~l~~L~~L~L~~n~i~-------------~~~~-~~~l~~L~~L~L~~n~l~~~~  101 (308)
T 1h6u_A           39 DLDGITTLSAFGT-GVTTIEG--VQYLNNLIGLELKDNQIT-------------DLAP-LKNLTKITELELSGNPLKNVS  101 (308)
T ss_dssp             HHHTCCEEECTTS-CCCCCTT--GGGCTTCCEEECCSSCCC-------------CCGG-GTTCCSCCEEECCSCCCSCCG
T ss_pred             HcCCcCEEEeeCC-CccCchh--hhccCCCCEEEccCCcCC-------------CChh-HccCCCCCEEEccCCcCCCch
Confidence            4678999999999 8999984  899999999999999985             2333 889999999999877766654


Q ss_pred             hhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEE
Q 035891           83 RLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSI  162 (309)
Q Consensus        83 ~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l  162 (309)
                      .+..       +++|+.|+++++. +..++  .+..+++|+.|+++++ .+..++.  ..          .+++|+.|++
T Consensus       102 ~~~~-------l~~L~~L~l~~n~-l~~~~--~l~~l~~L~~L~l~~n-~l~~~~~--l~----------~l~~L~~L~l  158 (308)
T 1h6u_A          102 AIAG-------LQSIKTLDLTSTQ-ITDVT--PLAGLSNLQVLYLDLN-QITNISP--LA----------GLTNLQYLSI  158 (308)
T ss_dssp             GGTT-------CTTCCEEECTTSC-CCCCG--GGTTCTTCCEEECCSS-CCCCCGG--GG----------GCTTCCEEEC
T ss_pred             hhcC-------CCCCCEEECCCCC-CCCch--hhcCCCCCCEEECCCC-ccCcCcc--cc----------CCCCccEEEc
Confidence            3333       4479999999964 55553  4788999999999984 6666543  22          7899999999


Q ss_pred             eCceecccCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCccCCCCccE
Q 035891          163 WGSKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALPFPHLKE  242 (309)
Q Consensus       163 ~~c~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~  242 (309)
                      ++|++..++.+..+++|++|++++| .++.+.              .+..+++|++|+++++ .++.++. ...+++|+.
T Consensus       159 ~~n~l~~~~~l~~l~~L~~L~l~~n-~l~~~~--------------~l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~  221 (308)
T 1h6u_A          159 GNAQVSDLTPLANLSKLTTLKADDN-KISDIS--------------PLASLPNLIEVHLKNN-QISDVSP-LANTSNLFI  221 (308)
T ss_dssp             CSSCCCCCGGGTTCTTCCEEECCSS-CCCCCG--------------GGGGCTTCCEEECTTS-CCCBCGG-GTTCTTCCE
T ss_pred             cCCcCCCChhhcCCCCCCEEECCCC-ccCcCh--------------hhcCCCCCCEEEccCC-ccCcccc-ccCCCCCCE
Confidence            9998888777889999999999987 455553              3678999999999996 6777763 558999999


Q ss_pred             EeecCcccCCCCCC
Q 035891          243 LEVNLCPKLEKLPF  256 (309)
Q Consensus       243 L~i~~C~~L~~lp~  256 (309)
                      |++++++ +...|.
T Consensus       222 L~l~~N~-i~~~~~  234 (308)
T 1h6u_A          222 VTLTNQT-ITNQPV  234 (308)
T ss_dssp             EEEEEEE-EECCCE
T ss_pred             EEccCCe-eecCCe
Confidence            9999874 555554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.73  E-value=4e-17  Score=139.11  Aligned_cols=197  Identities=18%  Similarity=0.230  Sum_probs=150.4

Q ss_pred             CCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhc
Q 035891            6 NLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLL   85 (309)
Q Consensus         6 ~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~   85 (309)
                      ..++++++++ .++.+|.. +.  ++|++|++++|.+.            ......+..+++|+.|+++.+....++...
T Consensus        17 ~~~~l~~~~~-~l~~ip~~-~~--~~l~~L~l~~n~l~------------~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~   80 (270)
T 2o6q_A           17 NKNSVDCSSK-KLTAIPSN-IP--ADTKKLDLQSNKLS------------SLPSKAFHRLTKLRLLYLNDNKLQTLPAGI   80 (270)
T ss_dssp             TTTEEECTTS-CCSSCCSC-CC--TTCSEEECCSSCCS------------CCCTTSSSSCTTCCEEECCSSCCSCCCTTT
T ss_pred             CCCEEEccCC-CCCccCCC-CC--CCCCEEECcCCCCC------------eeCHHHhcCCCCCCEEECCCCccCeeChhh
Confidence            4788999998 89999986 43  68999999999986            333446888999999999766554433211


Q ss_pred             CCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCc
Q 035891           86 TSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGS  165 (309)
Q Consensus        86 ~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c  165 (309)
                       ...    +++|+.|+++++ .+..++...+..+++|+.|++++ +.+..++...+.          .+++|+.|++++|
T Consensus        81 -~~~----l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~----------~l~~L~~L~Ls~n  143 (270)
T 2o6q_A           81 -FKE----LKNLETLWVTDN-KLQALPIGVFDQLVNLAELRLDR-NQLKSLPPRVFD----------SLTKLTYLSLGYN  143 (270)
T ss_dssp             -TSS----CTTCCEEECCSS-CCCCCCTTTTTTCSSCCEEECCS-SCCCCCCTTTTT----------TCTTCCEEECCSS
T ss_pred             -hcC----CCCCCEEECCCC-cCCcCCHhHcccccCCCEEECCC-CccCeeCHHHhC----------cCcCCCEEECCCC
Confidence             111    447999999985 45666645678889999999998 577777766554          7899999999999


Q ss_pred             eecccCc--cCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCcc-CCCCccE
Q 035891          166 KLRHVTW--LILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKAL-PFPHLKE  242 (309)
Q Consensus       166 ~l~~l~~--l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~-~~~~L~~  242 (309)
                      .+..++.  +..+++|++|++++| .++.++.            ..+..+++|++|+++++ .++.++...+ .+++|+.
T Consensus       144 ~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~  209 (270)
T 2o6q_A          144 ELQSLPKGVFDKLTSLKELRLYNN-QLKRVPE------------GAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKM  209 (270)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCT------------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCE
T ss_pred             cCCccCHhHccCCcccceeEecCC-cCcEeCh------------hHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCE
Confidence            7777763  677899999999887 4555542            34677899999999986 7888877644 7899999


Q ss_pred             EeecCcc
Q 035891          243 LEVNLCP  249 (309)
Q Consensus       243 L~i~~C~  249 (309)
                      |+++++|
T Consensus       210 L~l~~N~  216 (270)
T 2o6q_A          210 LQLQENP  216 (270)
T ss_dssp             EECCSSC
T ss_pred             EEecCCC
Confidence            9998864

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.73  E-value=1e-17  Score=145.32  Aligned_cols=204  Identities=16%  Similarity=0.135  Sum_probs=152.8

Q ss_pred             CCCCCCCcEEecCCCcCCCCC---chhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEec
Q 035891            1 LKYLVNLKCLNLEYTYRIYKI---PGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQS   77 (309)
Q Consensus         1 l~~L~~Lr~L~l~~~~~l~~l---p~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~   77 (309)
                      |+++++|++|++++| .++.+   |.. +..+++|++|++++|.+             ..++..+..+++|+.|+++.+.
T Consensus        48 ~~~l~~L~~L~L~~n-~l~~~~~~~~~-~~~~~~L~~L~Ls~n~i-------------~~l~~~~~~l~~L~~L~l~~n~  112 (306)
T 2z66_A           48 FDKLTQLTKLSLSSN-GLSFKGCCSQS-DFGTTSLKYLDLSFNGV-------------ITMSSNFLGLEQLEHLDFQHSN  112 (306)
T ss_dssp             TTTCTTCSEEECCSS-CCCEEEEEEHH-HHSCSCCCEEECCSCSE-------------EEEEEEEETCTTCCEEECTTSE
T ss_pred             hhccccCCEEECCCC-ccCcccCcccc-cccccccCEEECCCCcc-------------ccChhhcCCCCCCCEEECCCCc
Confidence            468899999999999 88765   565 77899999999999988             4556668889999999997666


Q ss_pred             chhhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCce-EEcCccCcccccCCCcccccC
Q 035891           78 FAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEE-MEIDYAGEEVKRIRETHGFFS  156 (309)
Q Consensus        78 ~~~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~-l~~~~~~~~~~~~~~~~~~~~  156 (309)
                      ...+........    +++|+.|+++++. +.......+..+++|+.|+++++ .+.. .......          .+++
T Consensus       113 l~~~~~~~~~~~----l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~----------~l~~  176 (306)
T 2z66_A          113 LKQMSEFSVFLS----LRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFT----------ELRN  176 (306)
T ss_dssp             EESSTTTTTTTT----CTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTC-EEGGGEECSCCT----------TCTT
T ss_pred             ccccccchhhhh----ccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCC-ccccccchhHHh----------hCcC
Confidence            555443222223    4479999999864 44444356788899999999985 4443 3333333          7899


Q ss_pred             cceEEEeCceecccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCC-C
Q 035891          157 LHKVSIWGSKLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYP-K  233 (309)
Q Consensus       157 L~~L~l~~c~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~-~  233 (309)
                      |+.|++++|++..++  .+..+++|++|++++|. ++.+..            ..+..+++|++|+++++ .+..... .
T Consensus       177 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~------------~~~~~l~~L~~L~L~~N-~l~~~~~~~  242 (306)
T 2z66_A          177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDT------------FPYKCLNSLQVLDYSLN-HIMTSKKQE  242 (306)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CSBCCS------------GGGTTCTTCCEEECTTS-CCCBCSSSS
T ss_pred             CCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc-cCccCh------------hhccCcccCCEeECCCC-CCcccCHHH
Confidence            999999999766663  56788999999999874 444432            35678899999999997 5655444 4


Q ss_pred             ccCCC-CccEEeecCcc
Q 035891          234 ALPFP-HLKELEVNLCP  249 (309)
Q Consensus       234 ~~~~~-~L~~L~i~~C~  249 (309)
                      ...++ +|++|++++++
T Consensus       243 ~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          243 LQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             CCCCCTTCCEEECTTCC
T ss_pred             HHhhhccCCEEEccCCC
Confidence            44664 89999999863

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.73  E-value=3.3e-17  Score=143.59  Aligned_cols=214  Identities=18%  Similarity=0.203  Sum_probs=152.6

Q ss_pred             CCCCCCCcEEecCCCcCCCCC-chhhhcCCCCCceEEecccCCCCccCCc-------cccC--CcccchhhhhccCCCce
Q 035891            1 LKYLVNLKCLNLEYTYRIYKI-PGQVISNLKMLEALRMFKCGSSKQESDS-------ILFG--GSLVLVEELLGLERLNV   70 (309)
Q Consensus         1 l~~L~~Lr~L~l~~~~~l~~l-p~~~i~~L~~L~~L~l~~~~~~~~~~~~-------~l~~--~~~~~~~~l~~L~~L~~   70 (309)
                      |+++++|++|++++| .++.+ |.. ++++++|++|++++|.+..++..+       ++..  ........+..+++|+.
T Consensus        72 ~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  149 (330)
T 1xku_A           72 FKNLKNLHTLILINN-KISKISPGA-FAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIV  149 (330)
T ss_dssp             TTTCTTCCEEECCSS-CCCCBCTTT-TTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCE
T ss_pred             hccCCCCCEEECCCC-cCCeeCHHH-hcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccE
Confidence            567899999999999 88887 554 999999999999999988766543       1111  12223345777888888


Q ss_pred             EEEEEecchhhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCC
Q 035891           71 LTITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRE  150 (309)
Q Consensus        71 L~l~~~~~~~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~  150 (309)
                      |+++.+..........  .+.. +++|+.|+++++. +..++. .+  .++|+.|++++ +.+..+......        
T Consensus       150 L~l~~n~l~~~~~~~~--~~~~-l~~L~~L~l~~n~-l~~l~~-~~--~~~L~~L~l~~-n~l~~~~~~~~~--------  213 (330)
T 1xku_A          150 VELGTNPLKSSGIENG--AFQG-MKKLSYIRIADTN-ITTIPQ-GL--PPSLTELHLDG-NKITKVDAASLK--------  213 (330)
T ss_dssp             EECCSSCCCGGGBCTT--GGGG-CTTCCEEECCSSC-CCSCCS-SC--CTTCSEEECTT-SCCCEECTGGGT--------
T ss_pred             EECCCCcCCccCcChh--hccC-CCCcCEEECCCCc-cccCCc-cc--cccCCEEECCC-CcCCccCHHHhc--------
Confidence            8886554432211111  1111 4578888888853 455542 22  26889999988 467777655544        


Q ss_pred             cccccCcceEEEeCceecccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeecccccccc
Q 035891          151 THGFFSLHKVSIWGSKLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLR  228 (309)
Q Consensus       151 ~~~~~~L~~L~l~~c~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~  228 (309)
                        .+++|+.|++++|.+..++  .+..+++|++|++++| .++.++             ..+..+++|++|+++++ .++
T Consensus       214 --~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp-------------~~l~~l~~L~~L~l~~N-~i~  276 (330)
T 1xku_A          214 --GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVP-------------GGLADHKYIQVVYLHNN-NIS  276 (330)
T ss_dssp             --TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCC-------------TTTTTCSSCCEEECCSS-CCC
T ss_pred             --CCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCccCC-------------hhhccCCCcCEEECCCC-cCC
Confidence              7899999999999666654  4778899999999998 455554             46778999999999996 688


Q ss_pred             ccCCCcc-------CCCCccEEeecCcc
Q 035891          229 SIYPKAL-------PFPHLKELEVNLCP  249 (309)
Q Consensus       229 ~l~~~~~-------~~~~L~~L~i~~C~  249 (309)
                      .++...+       ..++|+.+++.+.|
T Consensus       277 ~~~~~~f~~~~~~~~~~~l~~l~l~~N~  304 (330)
T 1xku_A          277 AIGSNDFCPPGYNTKKASYSGVSLFSNP  304 (330)
T ss_dssp             CCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             ccChhhcCCcccccccccccceEeecCc
Confidence            8876544       24778888888865

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.73  E-value=2e-17  Score=145.15  Aligned_cols=212  Identities=16%  Similarity=0.149  Sum_probs=135.9

Q ss_pred             CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhh
Q 035891            5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRL   84 (309)
Q Consensus         5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~   84 (309)
                      .+|++|++++| .+..++.+.+.++++|++|++++|.+.            ...+..++.+++|+.|+++.+....++..
T Consensus        54 ~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~------------~~~~~~~~~l~~L~~L~L~~n~l~~l~~~  120 (332)
T 2ft3_A           54 PDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKIS------------KIHEKAFSPLRKLQKLYISKNHLVEIPPN  120 (332)
T ss_dssp             TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCC------------EECGGGSTTCTTCCEEECCSSCCCSCCSS
T ss_pred             CCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccC------------ccCHhHhhCcCCCCEEECCCCcCCccCcc
Confidence            46788888887 777765544778888888888888775            44567788899999998876655543321


Q ss_pred             cCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCce--EEcCccCc------------ccccCCC
Q 035891           85 LTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEE--MEIDYAGE------------EVKRIRE  150 (309)
Q Consensus        85 ~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~--l~~~~~~~------------~~~~~~~  150 (309)
                      ..        ++|+.|+++++ .+..++...+..+++|+.|+++++ .++.  +.......            ... ++.
T Consensus       121 ~~--------~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~L~~L~l~~n~l~~-l~~  189 (332)
T 2ft3_A          121 LP--------SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGN-PLENSGFEPGAFDGLKLNYLRISEAKLTG-IPK  189 (332)
T ss_dssp             CC--------TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSC-CCBGGGSCTTSSCSCCCSCCBCCSSBCSS-CCS
T ss_pred             cc--------ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCC-ccccCCCCcccccCCccCEEECcCCCCCc-cCc
Confidence            11        26888998885 455565445778889999998874 4432  11111110            000 001


Q ss_pred             cccccCcceEEEeCceecccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeecccccccc
Q 035891          151 THGFFSLHKVSIWGSKLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLR  228 (309)
Q Consensus       151 ~~~~~~L~~L~l~~c~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~  228 (309)
                      . .+++|+.|++++|.+..++  .+..+++|++|++++| .++.+..            ..+..+++|++|+++++ .++
T Consensus       190 ~-~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~------------~~~~~l~~L~~L~L~~N-~l~  254 (332)
T 2ft3_A          190 D-LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN-QIRMIEN------------GSLSFLPTLRELHLDNN-KLS  254 (332)
T ss_dssp             S-SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSS-CCCCCCT------------TGGGGCTTCCEEECCSS-CCC
T ss_pred             c-ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cCCcCCh------------hHhhCCCCCCEEECCCC-cCe
Confidence            1 2356666666666444443  3555666777777665 3333321            24667788888888885 677


Q ss_pred             ccCCCccCCCCccEEeecCcccCCCCCC
Q 035891          229 SIYPKALPFPHLKELEVNLCPKLEKLPF  256 (309)
Q Consensus       229 ~l~~~~~~~~~L~~L~i~~C~~L~~lp~  256 (309)
                      .++.....+++|+.|+++++ +++.+|.
T Consensus       255 ~lp~~l~~l~~L~~L~l~~N-~l~~~~~  281 (332)
T 2ft3_A          255 RVPAGLPDLKLLQVVYLHTN-NITKVGV  281 (332)
T ss_dssp             BCCTTGGGCTTCCEEECCSS-CCCBCCT
T ss_pred             ecChhhhcCccCCEEECCCC-CCCccCh
Confidence            88777778888888888886 5666654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.73  E-value=1e-16  Score=151.70  Aligned_cols=156  Identities=15%  Similarity=0.127  Sum_probs=86.4

Q ss_pred             CCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecch-h
Q 035891            2 KYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFA-A   80 (309)
Q Consensus         2 ~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~-~   80 (309)
                      +++++|++|++++| .++.+|.+ ++++++|++|++++|.+.            ...+..+..+++|+.|++..+... .
T Consensus       275 ~~l~~L~~L~l~~n-~l~~lp~~-l~~l~~L~~L~l~~n~l~------------~~~~~~~~~l~~L~~L~l~~n~~~~~  340 (606)
T 3t6q_A          275 HCFSGLQELDLTAT-HLSELPSG-LVGLSTLKKLVLSANKFE------------NLCQISASNFPSLTHLSIKGNTKRLE  340 (606)
T ss_dssp             TTCTTCSEEECTTS-CCSCCCSS-CCSCTTCCEEECTTCCCS------------BGGGGCGGGCTTCSEEECCSCSSCCB
T ss_pred             ccccCCCEEeccCC-ccCCCChh-hcccccCCEEECccCCcC------------cCchhhhhccCcCCEEECCCCCcccc
Confidence            44566666666666 66666665 566666666666666664            333455666777777777544322 1


Q ss_pred             hhhhcCCcCccccCCCcCeEEEecCCCCCeec--ccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcc
Q 035891           81 LHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLS--VFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLH  158 (309)
Q Consensus        81 l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~--~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~  158 (309)
                      ++. .....    +++|+.|+++++. +....  ...+..+++|+.|+++++ .+..+......          .+++|+
T Consensus       341 ~~~-~~~~~----l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~----------~l~~L~  403 (606)
T 3t6q_A          341 LGT-GCLEN----LENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKTEAFK----------ECPQLE  403 (606)
T ss_dssp             CCS-STTTT----CTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSC-SCEEECTTTTT----------TCTTCS
T ss_pred             cch-hhhhc----cCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCC-cCCcCCHHHhc----------CCccCC
Confidence            111 00111    3467777777643 33332  234566777777777763 45555444333          456666


Q ss_pred             eEEEeCceecccC---ccCCCCCccEEEEEcCc
Q 035891          159 KVSIWGSKLRHVT---WLILAPNLKHIEVYNCR  188 (309)
Q Consensus       159 ~L~l~~c~l~~l~---~l~~l~~L~~L~l~~c~  188 (309)
                      .|++++|.+....   .+..+++|++|++++|.
T Consensus       404 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~  436 (606)
T 3t6q_A          404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL  436 (606)
T ss_dssp             EEECTTCCEECCTTCCTTTTCTTCCEEECTTCC
T ss_pred             eEECCCCcCCCcccchhhhCcccCCEEECCCCc
Confidence            6666666333321   24556666666666653

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.72  E-value=4.7e-17  Score=143.50  Aligned_cols=205  Identities=20%  Similarity=0.225  Sum_probs=117.5

Q ss_pred             CCCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCc--------cccCC-cccchhhhhccCCCceE
Q 035891            1 LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDS--------ILFGG-SLVLVEELLGLERLNVL   71 (309)
Q Consensus         1 l~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~--------~l~~~-~~~~~~~l~~L~~L~~L   71 (309)
                      ++++++|++|++++| .++.+|.  +.++++|++|++++|.+...+.-.        ++... ....+..+..+++|+.|
T Consensus        84 ~~~l~~L~~L~L~~n-~i~~~~~--~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L  160 (347)
T 4fmz_A           84 LSNLVKLTNLYIGTN-KITDISA--LQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYL  160 (347)
T ss_dssp             GTTCTTCCEEECCSS-CCCCCGG--GTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEE
T ss_pred             hhcCCcCCEEEccCC-cccCchH--HcCCCcCCEEECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEE
Confidence            467889999999999 8888874  889999999999998887554310        11111 12223346666777777


Q ss_pred             EEEEecchhhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCc
Q 035891           72 TITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRET  151 (309)
Q Consensus        72 ~l~~~~~~~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~  151 (309)
                      ++..+....+..+..       +++|+.|++++|. +..++  .+..+++|+.|++.++ .+..+..  ..         
T Consensus       161 ~l~~~~~~~~~~~~~-------l~~L~~L~l~~n~-l~~~~--~~~~l~~L~~L~l~~n-~l~~~~~--~~---------  218 (347)
T 4fmz_A          161 TVTESKVKDVTPIAN-------LTDLYSLSLNYNQ-IEDIS--PLASLTSLHYFTAYVN-QITDITP--VA---------  218 (347)
T ss_dssp             ECCSSCCCCCGGGGG-------CTTCSEEECTTSC-CCCCG--GGGGCTTCCEEECCSS-CCCCCGG--GG---------
T ss_pred             EecCCCcCCchhhcc-------CCCCCEEEccCCc-ccccc--cccCCCccceeecccC-CCCCCch--hh---------
Confidence            665544443333221       3467777777753 33442  2556667777777663 3443332  11         


Q ss_pred             ccccCcceEEEeCceecccCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccC
Q 035891          152 HGFFSLHKVSIWGSKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIY  231 (309)
Q Consensus       152 ~~~~~L~~L~l~~c~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~  231 (309)
                       .+++|+.|++++|++..++.+..+++|++|++++| .++.+              ..+..+++|++|++++| .++.++
T Consensus       219 -~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~--------------~~~~~l~~L~~L~l~~n-~l~~~~  281 (347)
T 4fmz_A          219 -NMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTN-QISDI--------------NAVKDLTKLKMLNVGSN-QISDIS  281 (347)
T ss_dssp             -GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCC--------------GGGTTCTTCCEEECCSS-CCCCCG
T ss_pred             -cCCcCCEEEccCCccCCCcchhcCCCCCEEECCCC-ccCCC--------------hhHhcCCCcCEEEccCC-ccCCCh
Confidence             56667777777665555555566666777777665 23333              12344555555555554 344432


Q ss_pred             CCccCCCCccEEeecCc
Q 035891          232 PKALPFPHLKELEVNLC  248 (309)
Q Consensus       232 ~~~~~~~~L~~L~i~~C  248 (309)
                       ....+++|+.|++++|
T Consensus       282 -~~~~l~~L~~L~L~~n  297 (347)
T 4fmz_A          282 -VLNNLSQLNSLFLNNN  297 (347)
T ss_dssp             -GGGGCTTCSEEECCSS
T ss_pred             -hhcCCCCCCEEECcCC
Confidence             1234455555555554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.72  E-value=4.9e-17  Score=153.82  Aligned_cols=216  Identities=19%  Similarity=0.216  Sum_probs=137.4

Q ss_pred             CCCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCc----------cccCC--cccchhhhhccCCC
Q 035891            1 LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDS----------ILFGG--SLVLVEELLGLERL   68 (309)
Q Consensus         1 l~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~----------~l~~~--~~~~~~~l~~L~~L   68 (309)
                      |+++.+|++|++++| .+..+|...++++++|++|++++|.+..+++.+          ++...  ....+..++.+++|
T Consensus        95 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  173 (597)
T 3oja_B           95 FAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL  173 (597)
T ss_dssp             TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTC
T ss_pred             hcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcC
Confidence            456778888888887 777776665678888888888888777655432          11111  12233456677777


Q ss_pred             ceEEEEEecchhhhhhcCCcCcc------------ccC---------------------CCcCeEEEecCCCCCeecccC
Q 035891           69 NVLTITLQSFAALHRLLTSPSLQ------------SIF---------------------SNTPSLCLRNCHSLSSLSVFT  115 (309)
Q Consensus        69 ~~L~l~~~~~~~l~~~~~~~~l~------------~~l---------------------~~L~~L~l~~~~~l~~~~~~~  115 (309)
                      +.|+++.+....+. ......+.            ...                     ++|+.|+++++. +...  ..
T Consensus       174 ~~L~L~~N~l~~~~-~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~-l~~~--~~  249 (597)
T 3oja_B          174 QNLQLSSNRLTHVD-LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNN-LTDT--AW  249 (597)
T ss_dssp             CEEECTTSCCSBCC-GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSC-CCCC--GG
T ss_pred             cEEECcCCCCCCcC-hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCC-CCCC--hh
Confidence            77777655443221 00000000            001                     124444444422 2222  34


Q ss_pred             ccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCceecccC-ccCCCCCccEEEEEcCccccccc
Q 035891          116 LASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVT-WLILAPNLKHIEVYNCRYLDEII  194 (309)
Q Consensus       116 l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l~-~l~~l~~L~~L~l~~c~~l~~~~  194 (309)
                      +..+++|+.|++++ +.+..+....+.          .+++|+.|++++|.+..++ ....+|+|++|++++|. +..++
T Consensus       250 l~~l~~L~~L~Ls~-N~l~~~~~~~~~----------~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~  317 (597)
T 3oja_B          250 LLNYPGLVEVDLSY-NELEKIMYHPFV----------KMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVE  317 (597)
T ss_dssp             GGGCTTCSEEECCS-SCCCEEESGGGT----------TCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSC-CCCCG
T ss_pred             hccCCCCCEEECCC-CccCCCCHHHhc----------CccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCC-CCccC
Confidence            56677888888887 466666554444          6889999999988666665 34568899999998874 44554


Q ss_pred             cccccCCcCcccccCCccCCccceeeccccccccccCCCccCCCCccEEeecCcc
Q 035891          195 SLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALPFPHLKELEVNLCP  249 (309)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i~~C~  249 (309)
                                   ..+..+++|++|+++++ .+..++  ...+++|+.|++++++
T Consensus       318 -------------~~~~~l~~L~~L~L~~N-~l~~~~--~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          318 -------------RNQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHND  356 (597)
T ss_dssp             -------------GGHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSC
T ss_pred             -------------cccccCCCCCEEECCCC-CCCCcC--hhhcCCCCEEEeeCCC
Confidence                         35678999999999996 577665  4578999999999865

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.71  E-value=5.1e-17  Score=143.30  Aligned_cols=198  Identities=16%  Similarity=0.205  Sum_probs=131.6

Q ss_pred             CCCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchh
Q 035891            1 LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAA   80 (309)
Q Consensus         1 l~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~   80 (309)
                      ++++++|++|++++|..+..++.  +..+++|++|++++|.+..             . ..+..+++|+.|+++.+....
T Consensus       128 ~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~-------------~-~~~~~l~~L~~L~l~~n~l~~  191 (347)
T 4fmz_A          128 LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKD-------------V-TPIANLTDLYSLSLNYNQIED  191 (347)
T ss_dssp             GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCC-------------C-GGGGGCTTCSEEECTTSCCCC
T ss_pred             hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCC-------------c-hhhccCCCCCEEEccCCcccc
Confidence            35788999999999955555554  8999999999999998852             1 127778888888886655544


Q ss_pred             hhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceE
Q 035891           81 LHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKV  160 (309)
Q Consensus        81 l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L  160 (309)
                      +..+..       +++|+.++++++. +...+  .+..+++|+.|++++| .+..++.  ..          .+++|+.|
T Consensus       192 ~~~~~~-------l~~L~~L~l~~n~-l~~~~--~~~~~~~L~~L~l~~n-~l~~~~~--~~----------~l~~L~~L  248 (347)
T 4fmz_A          192 ISPLAS-------LTSLHYFTAYVNQ-ITDIT--PVANMTRLNSLKIGNN-KITDLSP--LA----------NLSQLTWL  248 (347)
T ss_dssp             CGGGGG-------CTTCCEEECCSSC-CCCCG--GGGGCTTCCEEECCSS-CCCCCGG--GT----------TCTTCCEE
T ss_pred             cccccC-------CCccceeecccCC-CCCCc--hhhcCCcCCEEEccCC-ccCCCcc--hh----------cCCCCCEE
Confidence            443222       3367888887753 33332  2667778888888774 4555443  22          67788888


Q ss_pred             EEeCceecccCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCC-ccCCCC
Q 035891          161 SIWGSKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPK-ALPFPH  239 (309)
Q Consensus       161 ~l~~c~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~-~~~~~~  239 (309)
                      ++++|.+..++.+..+++|++|++++| .++++              ..+..+++|+.|++++| .++..... ...+++
T Consensus       249 ~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~--------------~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~  312 (347)
T 4fmz_A          249 EIGTNQISDINAVKDLTKLKMLNVGSN-QISDI--------------SVLNNLSQLNSLFLNNN-QLGNEDMEVIGGLTN  312 (347)
T ss_dssp             ECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCC--------------GGGGGCTTCSEEECCSS-CCCGGGHHHHHTCTT
T ss_pred             ECCCCccCCChhHhcCCCcCEEEccCC-ccCCC--------------hhhcCCCCCCEEECcCC-cCCCcChhHhhcccc
Confidence            888776666666677778888888776 34443              23556777777777776 34443322 336777


Q ss_pred             ccEEeecCcccCCCC
Q 035891          240 LKELEVNLCPKLEKL  254 (309)
Q Consensus       240 L~~L~i~~C~~L~~l  254 (309)
                      |+.|++++|+ ++.+
T Consensus       313 L~~L~L~~n~-l~~~  326 (347)
T 4fmz_A          313 LTTLFLSQNH-ITDI  326 (347)
T ss_dssp             CSEEECCSSS-CCCC
T ss_pred             CCEEEccCCc-cccc
Confidence            7777777774 5444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.71  E-value=1.1e-16  Score=149.80  Aligned_cols=42  Identities=33%  Similarity=0.369  Sum_probs=26.5

Q ss_pred             CCCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCC
Q 035891            1 LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSS   43 (309)
Q Consensus         1 l~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~   43 (309)
                      |+++++||+|++++| .+..++.+.++++++|++|++++|.+.
T Consensus        46 ~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~   87 (549)
T 2z81_A           46 LRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHLS   87 (549)
T ss_dssp             TSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred             hhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCccC
Confidence            345666666666666 666655444666666666666666665

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.71  E-value=1.6e-16  Score=150.46  Aligned_cols=64  Identities=22%  Similarity=0.250  Sum_probs=35.6

Q ss_pred             CCCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEec
Q 035891            1 LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQS   77 (309)
Q Consensus         1 l~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~   77 (309)
                      |+++++||+|++++| .+..++.+.++++++|++|++++|.+.            ...+..++.+++|++|+++.+.
T Consensus        53 ~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~------------~~~~~~~~~l~~L~~L~L~~n~  116 (606)
T 3t6q_A           53 FSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTANPLI------------FMAETALSGPKALKHLFFIQTG  116 (606)
T ss_dssp             STTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCS------------EECTTTTSSCTTCCEEECTTSC
T ss_pred             hccCccceEEECCCC-ccceeChhhccCccccCeeeCCCCccc------------ccChhhhcccccccEeeccccC
Confidence            345666666666666 555543333666666666666666664            2233445555555555554333

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.71  E-value=2.6e-16  Score=144.39  Aligned_cols=230  Identities=22%  Similarity=0.296  Sum_probs=116.0

Q ss_pred             CCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCC--------ccccCCcccchhhhhccCCCceEEE
Q 035891            2 KYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESD--------SILFGGSLVLVEELLGLERLNVLTI   73 (309)
Q Consensus         2 ~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~--------~~l~~~~~~~~~~l~~L~~L~~L~l   73 (309)
                      +.+.+|++|++++| .++.+|.  ++++++|++|++++|.+...++-        .++..........+..+++|+.|++
T Consensus        65 ~~l~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l  141 (466)
T 1o6v_A           65 EYLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL  141 (466)
T ss_dssp             GGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEE
T ss_pred             hhhcCCCEEECCCC-ccCCchh--hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChHHcCCCCCCEEEC
Confidence            34667777777777 6666665  66777777777777766544320        0111111111223777888888888


Q ss_pred             EEecchhhhhhcCCcCcc--------------ccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcC
Q 035891           74 TLQSFAALHRLLTSPSLQ--------------SIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEID  139 (309)
Q Consensus        74 ~~~~~~~l~~~~~~~~l~--------------~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~  139 (309)
                      +.+....++.+.....++              +.+++|+.|+++++. +..+  ..+..+++|+.|+++++ .+..+.. 
T Consensus       142 ~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~--~~l~~l~~L~~L~l~~n-~l~~~~~-  216 (466)
T 1o6v_A          142 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDI--SVLAKLTNLESLIATNN-QISDITP-  216 (466)
T ss_dssp             EEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCC--GGGGGCTTCSEEECCSS-CCCCCGG-
T ss_pred             CCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCC--hhhccCCCCCEEEecCC-ccccccc-
Confidence            777665544332221110              013344444444432 2222  12344455555555542 2222211 


Q ss_pred             ccCcccccCCCcccccCcceEEEeCceecccCccCCCCCccEEEEEcCccccccccccccCC--------cCcccccCCc
Q 035891          140 YAGEEVKRIRETHGFFSLHKVSIWGSKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGE--------VPSEEMQNLF  211 (309)
Q Consensus       140 ~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~--------~~~~~~~~~~  211 (309)
                       .          ..+++|+.|++++|.+..++.+..+++|++|++++|. +..+.+......        ........+.
T Consensus       217 -~----------~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  284 (466)
T 1o6v_A          217 -L----------GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ-ISNLAPLSGLTKLTELKLGANQISNISPLA  284 (466)
T ss_dssp             -G----------GGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSSCCCCCGGGT
T ss_pred             -c----------cccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCc-cccchhhhcCCCCCEEECCCCccCcccccc
Confidence             1          1455666666666655555455556666666666553 222211000000        0000001255


Q ss_pred             cCCccceeeccccccccccCCCccCCCCccEEeecCcccCCCC
Q 035891          212 PFARLESLSLYALGNLRSIYPKALPFPHLKELEVNLCPKLEKL  254 (309)
Q Consensus       212 ~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~l  254 (309)
                      .+++|++|+++++ .++.++. ...+++|+.|++++| ++..+
T Consensus       285 ~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~L~~n-~l~~~  324 (466)
T 1o6v_A          285 GLTALTNLELNEN-QLEDISP-ISNLKNLTYLTLYFN-NISDI  324 (466)
T ss_dssp             TCTTCSEEECCSS-CCSCCGG-GGGCTTCSEEECCSS-CCSCC
T ss_pred             CCCccCeEEcCCC-cccCchh-hcCCCCCCEEECcCC-cCCCc
Confidence            6777888888775 5655543 447788888888877 44443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.70  E-value=2.8e-17  Score=156.57  Aligned_cols=224  Identities=16%  Similarity=0.152  Sum_probs=140.4

Q ss_pred             CCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccC-CCCccCCccccCCcc-cchhhhhcc------CCCceEEEE
Q 035891            3 YLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCG-SSKQESDSILFGGSL-VLVEELLGL------ERLNVLTIT   74 (309)
Q Consensus         3 ~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~-~~~~~~~~~l~~~~~-~~~~~l~~L------~~L~~L~l~   74 (309)
                      ++++|++|++++|.....+|.. ++++++|++|++++|. +.            . .++..++.+      ++|+.|+++
T Consensus       247 ~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~~l~------------~~~lp~~~~~L~~~~~l~~L~~L~L~  313 (636)
T 4eco_A          247 NLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRGIS------------GEQLKDDWQALADAPVGEKIQIIYIG  313 (636)
T ss_dssp             GCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEECTTCTTSC------------HHHHHHHHHHHHHSGGGGTCCEEECC
T ss_pred             ccCCCCEEEecCCcCCccChHH-HhcCCCCCEEECcCCCCCc------------cccchHHHHhhhccccCCCCCEEECC
Confidence            8999999999999445678987 9999999999999998 65            4 567777776      899999988


Q ss_pred             EecchhhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccc
Q 035891           75 LQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGF  154 (309)
Q Consensus        75 ~~~~~~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~  154 (309)
                      .+....++.......    +++|+.|+++++.....++  .+..+++|+.|++++ +.+..++..+.           .+
T Consensus       314 ~n~l~~ip~~~~l~~----l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~-N~l~~lp~~l~-----------~l  375 (636)
T 4eco_A          314 YNNLKTFPVETSLQK----MKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAY-NQITEIPANFC-----------GF  375 (636)
T ss_dssp             SSCCSSCCCHHHHTT----CTTCCEEECCSCCCEEECC--CCEEEEEESEEECCS-SEEEECCTTSE-----------EE
T ss_pred             CCcCCccCchhhhcc----CCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCC-CccccccHhhh-----------hh
Confidence            776665543001112    3368888888854332665  677788888888887 45555554433           56


Q ss_pred             cC-cceEEEeCceecccCc-cCC--CCCccEEEEEcCccccccccccc-------cC-C-----cCc---ccc--cCCcc
Q 035891          155 FS-LHKVSIWGSKLRHVTW-LIL--APNLKHIEVYNCRYLDEIISLEK-------LG-E-----VPS---EEM--QNLFP  212 (309)
Q Consensus       155 ~~-L~~L~l~~c~l~~l~~-l~~--l~~L~~L~l~~c~~l~~~~~~~~-------~~-~-----~~~---~~~--~~~~~  212 (309)
                      ++ |+.|++++|.+..+|. +..  +++|++|++++|.....++....       .. .     ...   ...  .....
T Consensus       376 ~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~  455 (636)
T 4eco_A          376 TEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFST  455 (636)
T ss_dssp             CTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHT
T ss_pred             cccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHcc
Confidence            66 7777777775555552 222  33677777776643322211000       00 0     000   000  11234


Q ss_pred             CCccceeeccccccccccCCCccCC--------CCccEEeecCcccCCCCCCCCC
Q 035891          213 FARLESLSLYALGNLRSIYPKALPF--------PHLKELEVNLCPKLEKLPFDCT  259 (309)
Q Consensus       213 ~~~L~~L~L~~~~~L~~l~~~~~~~--------~~L~~L~i~~C~~L~~lp~~~~  259 (309)
                      +++|++|+++++ .++.++...+..        ++|+.|++++| +++.+|....
T Consensus       456 l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~  508 (636)
T 4eco_A          456 GSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFR  508 (636)
T ss_dssp             TCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCGGGS
T ss_pred             CCCCCEEECCCC-CCCCcCHHHhccccccccccCCccEEECcCC-cCCccChhhh
Confidence            677777777774 566666554422        27777777776 5666775543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.69  E-value=6.2e-17  Score=142.03  Aligned_cols=216  Identities=16%  Similarity=0.187  Sum_probs=145.1

Q ss_pred             CCCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCc-------cccCC--cccchhhhhccCCCceE
Q 035891            1 LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDS-------ILFGG--SLVLVEELLGLERLNVL   71 (309)
Q Consensus         1 l~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~-------~l~~~--~~~~~~~l~~L~~L~~L   71 (309)
                      |+++.+|++|++++| .++.++.+.++++++|++|++++|.+..++..+       ++...  .......+..+++|+.|
T Consensus        74 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L  152 (332)
T 2ft3_A           74 FKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCI  152 (332)
T ss_dssp             TTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEE
T ss_pred             hhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEE
Confidence            567899999999999 888874444999999999999999987665532       11111  11112235666667776


Q ss_pred             EEEEecchhhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCc
Q 035891           72 TITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRET  151 (309)
Q Consensus        72 ~l~~~~~~~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~  151 (309)
                      ++..+..........  .+.. + +|+.|+++++. +..++. .+  .++|+.|++++ +.+..++.....         
T Consensus       153 ~l~~n~l~~~~~~~~--~~~~-l-~L~~L~l~~n~-l~~l~~-~~--~~~L~~L~l~~-n~i~~~~~~~l~---------  214 (332)
T 2ft3_A          153 EMGGNPLENSGFEPG--AFDG-L-KLNYLRISEAK-LTGIPK-DL--PETLNELHLDH-NKIQAIELEDLL---------  214 (332)
T ss_dssp             ECCSCCCBGGGSCTT--SSCS-C-CCSCCBCCSSB-CSSCCS-SS--CSSCSCCBCCS-SCCCCCCTTSST---------
T ss_pred             ECCCCccccCCCCcc--cccC-C-ccCEEECcCCC-CCccCc-cc--cCCCCEEECCC-CcCCccCHHHhc---------
Confidence            665444332111111  0110 1 46666666643 344432 12  25777777777 456665544443         


Q ss_pred             ccccCcceEEEeCceecccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccc
Q 035891          152 HGFFSLHKVSIWGSKLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRS  229 (309)
Q Consensus       152 ~~~~~L~~L~l~~c~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~  229 (309)
                       .+++|+.|++++|++..++  .+..+++|++|++++| .++.++             ..+..+++|++|+++++ .++.
T Consensus       215 -~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp-------------~~l~~l~~L~~L~l~~N-~l~~  278 (332)
T 2ft3_A          215 -RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVP-------------AGLPDLKLLQVVYLHTN-NITK  278 (332)
T ss_dssp             -TCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCCBCC-------------TTGGGCTTCCEEECCSS-CCCB
T ss_pred             -CCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCeecC-------------hhhhcCccCCEEECCCC-CCCc
Confidence             7899999999999777765  4778999999999988 455665             45788999999999995 7888


Q ss_pred             cCCCcc-------CCCCccEEeecCcccC
Q 035891          230 IYPKAL-------PFPHLKELEVNLCPKL  251 (309)
Q Consensus       230 l~~~~~-------~~~~L~~L~i~~C~~L  251 (309)
                      ++...+       .+++|+.|++.++|-.
T Consensus       279 ~~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          279 VGVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             CCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             cChhHccccccccccccccceEeecCccc
Confidence            876543       2578999999998643

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.69  E-value=4.7e-17  Score=154.03  Aligned_cols=222  Identities=16%  Similarity=0.124  Sum_probs=144.0

Q ss_pred             CCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhh
Q 035891            3 YLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALH   82 (309)
Q Consensus         3 ~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~   82 (309)
                      ++.+|++|++++|..+..+  . ++.+++|++|++++|.+...          ...+..+..+++|+.|+++.+....++
T Consensus       326 ~l~~L~~L~l~~n~~~~~~--~-~~~l~~L~~L~ls~n~l~~~----------~~~~~~~~~~~~L~~L~L~~n~l~~~~  392 (606)
T 3vq2_A          326 DLPFLKSLTLTMNKGSISF--K-KVALPSLSYLDLSRNALSFS----------GCCSYSDLGTNSLRHLDLSFNGAIIMS  392 (606)
T ss_dssp             CCSSCCEEEEESCSSCEEC--C-CCCCTTCCEEECCSSCEEEE----------EECCHHHHCCSCCCEEECCSCSEEEEC
T ss_pred             CCCccceeeccCCcCccch--h-hccCCCCCEEECcCCccCCC----------cchhhhhccCCcccEeECCCCccccch
Confidence            5678888888888434334  2 67888888888888877411          113567778888888888766544443


Q ss_pred             hhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEE
Q 035891           83 RLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSI  162 (309)
Q Consensus        83 ~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l  162 (309)
                      .  ....    +++|+.|+++++......+...+..+++|+.|++++| .+.........          .+++|+.|++
T Consensus       393 ~--~~~~----l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~----------~l~~L~~L~l  455 (606)
T 3vq2_A          393 A--NFMG----LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT-NTKIDFDGIFL----------GLTSLNTLKM  455 (606)
T ss_dssp             C--CCTT----CTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTS-CCEECCTTTTT----------TCTTCCEEEC
T ss_pred             h--hccC----CCCCCeeECCCCccCCccChhhhhccccCCEEECcCC-CCCccchhhhc----------CCCCCCEEEC
Confidence            1  1112    4468888888764333332235677788888888875 45544433333          6788888888


Q ss_pred             eCceecc--cC-ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeecccccccccc-CCCccCCC
Q 035891          163 WGSKLRH--VT-WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSI-YPKALPFP  238 (309)
Q Consensus       163 ~~c~l~~--l~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l-~~~~~~~~  238 (309)
                      ++|.+..  +| .++.+++|++|++++|. ++.+++            ..+..+++|++|+++++ .+..+ +.....++
T Consensus       456 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~------------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~  521 (606)
T 3vq2_A          456 AGNSFKDNTLSNVFANTTNLTFLDLSKCQ-LEQISW------------GVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLY  521 (606)
T ss_dssp             TTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECT------------TTTTTCTTCCEEECCSS-CCSCEEGGGTTTCT
T ss_pred             CCCcCCCcchHHhhccCCCCCEEECCCCc-CCccCh------------hhhcccccCCEEECCCC-cCCCcCHHHccCCC
Confidence            8885544  33 46677888888888774 444432            45677888888888886 45554 44445778


Q ss_pred             CccEEeecCcccCCCCCCCCCCCCCcceEEE
Q 035891          239 HLKELEVNLCPKLEKLPFDCTSGQERKLIIK  269 (309)
Q Consensus       239 ~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~  269 (309)
                      +|+.|++++| +++.+|......+..++.+.
T Consensus       522 ~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~  551 (606)
T 3vq2_A          522 SLSTLDCSFN-RIETSKGILQHFPKSLAFFN  551 (606)
T ss_dssp             TCCEEECTTS-CCCCEESCGGGSCTTCCEEE
T ss_pred             cCCEEECCCC-cCcccCHhHhhhcccCcEEE
Confidence            8888888887 47777776444433455544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.69  E-value=9.4e-17  Score=137.17  Aligned_cols=198  Identities=17%  Similarity=0.248  Sum_probs=108.3

Q ss_pred             CCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhc
Q 035891            6 NLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLL   85 (309)
Q Consensus         6 ~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~   85 (309)
                      +|++|++++| .++.++...+.++++|++|++++|.+.            ......+..+++|+.|+++.+....+..- 
T Consensus        29 ~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-   94 (276)
T 2z62_A           29 STKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQ------------TIEDGAYQSLSHLSTLILTGNPIQSLALG-   94 (276)
T ss_dssp             TCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCC------------EECTTTTTTCTTCCEEECTTCCCCEECTT-
T ss_pred             CccEEECCCC-cccccCHhHhccccCCcEEECCCCcCC------------ccCHHHccCCcCCCEEECCCCccCccChh-
Confidence            4777777777 677666544677777777777777664            23334566677777777654443322210 


Q ss_pred             CCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEE-cCccCcccccCCCcccccCcceEEEeC
Q 035891           86 TSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEME-IDYAGEEVKRIRETHGFFSLHKVSIWG  164 (309)
Q Consensus        86 ~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~~~~~~~~~~~~L~~L~l~~  164 (309)
                      ....    +++|+.|+++++. +..++...+..+++|+.|++++ +.+..+. .....          .+++|+.|++++
T Consensus        95 ~~~~----l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~l~~~~~----------~l~~L~~L~Ls~  158 (276)
T 2z62_A           95 AFSG----LSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAH-NLIQSFKLPEYFS----------NLTNLEHLDLSS  158 (276)
T ss_dssp             TTTT----CTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCS-SCCCCCCCCGGGG----------GCTTCCEEECCS
T ss_pred             hhcC----CccccEEECCCCC-ccccCchhcccCCCCCEEECcC-CccceecCchhhc----------cCCCCCEEECCC
Confidence            0111    3357777766643 3344323456666777777766 3444422 12222          566777777776


Q ss_pred             ceecccC--ccCCCCCcc----EEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCcc-CC
Q 035891          165 SKLRHVT--WLILAPNLK----HIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKAL-PF  237 (309)
Q Consensus       165 c~l~~l~--~l~~l~~L~----~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~-~~  237 (309)
                      |++..++  .+..+++|+    +|+++++ .++.+.             .......+|+.|+++++ .++.++...+ .+
T Consensus       159 N~l~~~~~~~~~~l~~L~~l~l~L~ls~n-~l~~~~-------------~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l  223 (276)
T 2z62_A          159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQ-------------PGAFKEIRLKELALDTN-QLKSVPDGIFDRL  223 (276)
T ss_dssp             SCCCEECGGGGHHHHTCTTCCEEEECCSS-CCCEEC-------------TTSSCSCCEEEEECCSS-CCSCCCTTTTTTC
T ss_pred             CCCCcCCHHHhhhhhhccccceeeecCCC-cccccC-------------ccccCCCcccEEECCCC-ceeecCHhHhccc
Confidence            6544443  222333333    5666554 233333             12223346777777764 4666665443 56


Q ss_pred             CCccEEeecCc
Q 035891          238 PHLKELEVNLC  248 (309)
Q Consensus       238 ~~L~~L~i~~C  248 (309)
                      ++|+.|+++++
T Consensus       224 ~~L~~L~l~~N  234 (276)
T 2z62_A          224 TSLQKIWLHTN  234 (276)
T ss_dssp             CSCCEEECCSS
T ss_pred             ccccEEEccCC
Confidence            77777777654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.69  E-value=8e-16  Score=135.99  Aligned_cols=209  Identities=15%  Similarity=0.156  Sum_probs=130.6

Q ss_pred             CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccch-hhhhccCCCceEEE-EEecchhhh
Q 035891            5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLV-EELLGLERLNVLTI-TLQSFAALH   82 (309)
Q Consensus         5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~-~~l~~L~~L~~L~l-~~~~~~~l~   82 (309)
                      .++++|++++| .++.+|.+++.+|++|++|++++|.+..            .++ ..+.++++++.+.. ..+....++
T Consensus        30 ~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~------------~i~~~~f~~L~~l~~~l~~~~N~l~~l~   96 (350)
T 4ay9_X           30 RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLE------------VIEADVFSNLPKLHEIRIEKANNLLYIN   96 (350)
T ss_dssp             TTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCC------------EECTTSBCSCTTCCEEEEEEETTCCEEC
T ss_pred             CCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCC------------ccChhHhhcchhhhhhhcccCCcccccC
Confidence            46889999998 8999988768899999999999998752            222 23456666655433 223222221


Q ss_pred             hhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEE
Q 035891           83 RLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSI  162 (309)
Q Consensus        83 ~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l  162 (309)
                      .-    .+.. +++|+.|+++++ .+..++...+....++..+++.+++.+..++...+..         ....++.|++
T Consensus        97 ~~----~f~~-l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~---------~~~~l~~L~L  161 (350)
T 4ay9_X           97 PE----AFQN-LPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG---------LSFESVILWL  161 (350)
T ss_dssp             TT----SBCC-CTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTT---------SBSSCEEEEC
T ss_pred             ch----hhhh-cccccccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhh---------cchhhhhhcc
Confidence            10    0111 346777777764 3444433333344456667776666777776544331         2345777777


Q ss_pred             eCceecccCc-cCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCccCCCCcc
Q 035891          163 WGSKLRHVTW-LILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALPFPHLK  241 (309)
Q Consensus       163 ~~c~l~~l~~-l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~  241 (309)
                      ++|+++.++. ....++|++|.+.+++.++.++.            ..+..+++|++|+++++ ++++++..  .+..|+
T Consensus       162 ~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~------------~~f~~l~~L~~LdLs~N-~l~~lp~~--~~~~L~  226 (350)
T 4ay9_X          162 NKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPN------------DVFHGASGPVILDISRT-RIHSLPSY--GLENLK  226 (350)
T ss_dssp             CSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCT------------TTTTTEECCSEEECTTS-CCCCCCSS--SCTTCC
T ss_pred             ccccccCCChhhccccchhHHhhccCCcccCCCH------------HHhccCcccchhhcCCC-CcCccChh--hhccch
Confidence            7776666652 22345677777777667776653            34567777888888774 67777653  356777


Q ss_pred             EEeecCcccCCCCCC
Q 035891          242 ELEVNLCPKLEKLPF  256 (309)
Q Consensus       242 ~L~i~~C~~L~~lp~  256 (309)
                      .|.+.+|.+++.+|.
T Consensus       227 ~L~~l~~~~l~~lP~  241 (350)
T 4ay9_X          227 KLRARSTYNLKKLPT  241 (350)
T ss_dssp             EEECTTCTTCCCCCC
T ss_pred             HhhhccCCCcCcCCC
Confidence            777777777777774

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.69  E-value=4.3e-16  Score=133.70  Aligned_cols=202  Identities=15%  Similarity=0.114  Sum_probs=156.0

Q ss_pred             cEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhcCC
Q 035891            8 KCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLLTS   87 (309)
Q Consensus         8 r~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~~~   87 (309)
                      ++++.+++ .++.+|.+   -.++|++|++++|.+.            ......+..+++|+.|+++.+....+... ..
T Consensus        14 ~~~~c~~~-~l~~ip~~---~~~~l~~L~l~~n~i~------------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~   76 (285)
T 1ozn_A           14 VTTSCPQQ-GLQAVPVG---IPAASQRIFLHGNRIS------------HVPAASFRACRNLTILWLHSNVLARIDAA-AF   76 (285)
T ss_dssp             CEEECCSS-CCSSCCTT---CCTTCSEEECTTSCCC------------EECTTTTTTCTTCCEEECCSSCCCEECTT-TT
T ss_pred             eEEEcCcC-CcccCCcC---CCCCceEEEeeCCcCC------------ccCHHHcccCCCCCEEECCCCccceeCHh-hc
Confidence            67888888 89999975   3579999999999996            44445688999999999986655443210 11


Q ss_pred             cCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCcee
Q 035891           88 PSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKL  167 (309)
Q Consensus        88 ~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l  167 (309)
                      ..    +++|+.|+++++..+..++...+..+++|+.|++++ +.+..++.....          .+++|++|++++|.+
T Consensus        77 ~~----l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~----------~l~~L~~L~l~~n~l  141 (285)
T 1ozn_A           77 TG----LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR-CGLQELGPGLFR----------GLAALQYLYLQDNAL  141 (285)
T ss_dssp             TT----CTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTT-SCCCCCCTTTTT----------TCTTCCEEECCSSCC
T ss_pred             CC----ccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCC-CcCCEECHhHhh----------CCcCCCEEECCCCcc
Confidence            12    457999999997767777556788899999999998 467766555544          789999999999977


Q ss_pred             cccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeecccccccccc-CCCccCCCCccEEe
Q 035891          168 RHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSI-YPKALPFPHLKELE  244 (309)
Q Consensus       168 ~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l-~~~~~~~~~L~~L~  244 (309)
                      ..++  .+..+++|++|++++| .++.++.            ..+..+++|++|+++++ .++.+ +.....+++|+.|+
T Consensus       142 ~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~------------~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~  207 (285)
T 1ozn_A          142 QALPDDTFRDLGNLTHLFLHGN-RISSVPE------------RAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLY  207 (285)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSS-CCCEECT------------TTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEE
T ss_pred             cccCHhHhccCCCccEEECCCC-cccccCH------------HHhcCccccCEEECCCC-cccccCHhHccCcccccEee
Confidence            7776  3678999999999987 4555543            35778999999999996 57766 44455899999999


Q ss_pred             ecCcccCCCCCC
Q 035891          245 VNLCPKLEKLPF  256 (309)
Q Consensus       245 i~~C~~L~~lp~  256 (309)
                      +++| +++.+|.
T Consensus       208 l~~n-~l~~~~~  218 (285)
T 1ozn_A          208 LFAN-NLSALPT  218 (285)
T ss_dssp             CCSS-CCSCCCH
T ss_pred             CCCC-cCCcCCH
Confidence            9997 6777663

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.68  E-value=2.3e-16  Score=131.93  Aligned_cols=178  Identities=13%  Similarity=0.079  Sum_probs=141.7

Q ss_pred             CCCCCCCcEEecCCCcC-CCCCchhhhcCCCCCceEEecc-cCCCCccCCccccCCcccchhhhhccCCCceEEEEEecc
Q 035891            1 LKYLVNLKCLNLEYTYR-IYKIPGQVISNLKMLEALRMFK-CGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSF   78 (309)
Q Consensus         1 l~~L~~Lr~L~l~~~~~-l~~lp~~~i~~L~~L~~L~l~~-~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~   78 (309)
                      |+++++|++|++++| . ++.+|.+.+.++++|++|++++ |.+.            ......+..+++|+.|++..+..
T Consensus        51 ~~~l~~L~~L~l~~n-~~l~~i~~~~f~~l~~L~~L~l~~~n~l~------------~i~~~~f~~l~~L~~L~l~~n~l  117 (239)
T 2xwt_C           51 FSNLPNISRIYVSID-VTLQQLESHSFYNLSKVTHIEIRNTRNLT------------YIDPDALKELPLLKFLGIFNTGL  117 (239)
T ss_dssp             TTTCTTCCEEEEECC-SSCCEECTTTEESCTTCCEEEEEEETTCC------------EECTTSEECCTTCCEEEEEEECC
T ss_pred             ccCCCCCcEEeCCCC-CCcceeCHhHcCCCcCCcEEECCCCCCee------------EcCHHHhCCCCCCCEEeCCCCCC
Confidence            467899999999999 6 8999876689999999999998 7885            33345678899999999998877


Q ss_pred             hhhhhhcCCcCccccCCCcC---eEEEecCCCCCeecccCccccccCC-EEEEecCCCCceEEcCccCcccccCCCcccc
Q 035891           79 AALHRLLTSPSLQSIFSNTP---SLCLRNCHSLSSLSVFTLASLRHLE-ALDMTNCKDLEEMEIDYAGEEVKRIRETHGF  154 (309)
Q Consensus        79 ~~l~~~~~~~~l~~~l~~L~---~L~l~~~~~l~~~~~~~l~~l~~L~-~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~  154 (309)
                      ..++.+..       +++|+   .|+++++..++.++...+..+++|+ .|++++ +.++.++...+.           .
T Consensus       118 ~~lp~~~~-------l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~-n~l~~i~~~~~~-----------~  178 (239)
T 2xwt_C          118 KMFPDLTK-------VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN-NGFTSVQGYAFN-----------G  178 (239)
T ss_dssp             CSCCCCTT-------CCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS-CCCCEECTTTTT-----------T
T ss_pred             cccccccc-------ccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC-CCCcccCHhhcC-----------C
Confidence            76655333       23466   9999997678888766788999999 999998 578888876553           3


Q ss_pred             cCcceEEEeCc-eecccC--ccCCC-CCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeecccccc
Q 035891          155 FSLHKVSIWGS-KLRHVT--WLILA-PNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGN  226 (309)
Q Consensus       155 ~~L~~L~l~~c-~l~~l~--~l~~l-~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~  226 (309)
                      ++|+.|++++| .++.++  .+..+ ++|++|+++++ .++.++               ...|++|+.|.+.++..
T Consensus       179 ~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~---------------~~~~~~L~~L~l~~~~~  238 (239)
T 2xwt_C          179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALP---------------SKGLEHLKELIARNTWT  238 (239)
T ss_dssp             CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCC---------------CTTCTTCSEEECTTC--
T ss_pred             CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCC---------------hhHhccCceeeccCccC
Confidence            79999999999 588876  35677 99999999886 455554               23789999999988653

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.68  E-value=8.3e-16  Score=142.87  Aligned_cols=114  Identities=14%  Similarity=0.110  Sum_probs=72.1

Q ss_pred             cccCcceEEEeCceecccC----ccCCCCCccEEEEEcCccccccccccccC--C-----cCcc--cccCCccC-Cccce
Q 035891          153 GFFSLHKVSIWGSKLRHVT----WLILAPNLKHIEVYNCRYLDEIISLEKLG--E-----VPSE--EMQNLFPF-ARLES  218 (309)
Q Consensus       153 ~~~~L~~L~l~~c~l~~l~----~l~~l~~L~~L~l~~c~~l~~~~~~~~~~--~-----~~~~--~~~~~~~~-~~L~~  218 (309)
                      .+++|+.|++++|++..++    .+..+++|++|++++|.....++......  .     ....  +......+ ++|++
T Consensus       346 ~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~  425 (520)
T 2z7x_B          346 HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKV  425 (520)
T ss_dssp             CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCE
T ss_pred             cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCE
Confidence            6788888888888555432    35677888888888775333243210000  0     0000  00111223 68999


Q ss_pred             eeccccccccccCCCccCCCCccEEeecCcccCCCCCCC-CCCCCCcceEEE
Q 035891          219 LSLYALGNLRSIYPKALPFPHLKELEVNLCPKLEKLPFD-CTSGQERKLIIK  269 (309)
Q Consensus       219 L~L~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~-~~~~~~~l~~~~  269 (309)
                      |+++++ +++.++.....+++|+.|++++| +++.+|.. .... ..++.+.
T Consensus       426 L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l-~~L~~L~  474 (520)
T 2z7x_B          426 LDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRL-TSLQKIW  474 (520)
T ss_dssp             EECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTC-TTCCEEE
T ss_pred             EECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHHHhccC-CcccEEE
Confidence            999986 78888887779999999999998 78888876 4333 4555554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.68  E-value=1.9e-16  Score=154.61  Aligned_cols=242  Identities=12%  Similarity=0.119  Sum_probs=145.6

Q ss_pred             CCCCCCcEEecCCCcCCCCCch--hhhcCCCCCceEEecccCCCCccCCc---------cccC-CcccchhhhhccCC-C
Q 035891            2 KYLVNLKCLNLEYTYRIYKIPG--QVISNLKMLEALRMFKCGSSKQESDS---------ILFG-GSLVLVEELLGLER-L   68 (309)
Q Consensus         2 ~~L~~Lr~L~l~~~~~l~~lp~--~~i~~L~~L~~L~l~~~~~~~~~~~~---------~l~~-~~~~~~~~l~~L~~-L   68 (309)
                      ..+++|++|++++| .+..+|.  . ++++++|++|++++|.+..+| .+         .+.. .-..++..+..+++ |
T Consensus       545 ~~l~~L~~L~Ls~N-~L~~ip~~~~-l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L  621 (876)
T 4ecn_A          545 DTGPKIQIFYMGYN-NLEEFPASAS-LQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQV  621 (876)
T ss_dssp             TTTTTCCEEECCSS-CCCBCCCHHH-HTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTC
T ss_pred             cccCCccEEEeeCC-cCCccCChhh-hhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccC
Confidence            35568888888888 7888887  5 888888888888888877655 22         1111 11245666788888 8


Q ss_pred             ceEEEEEecchhhhhhcCCcCccc-------------------------cCCCcCeEEEecCCCCCeecccCccccccCC
Q 035891           69 NVLTITLQSFAALHRLLTSPSLQS-------------------------IFSNTPSLCLRNCHSLSSLSVFTLASLRHLE  123 (309)
Q Consensus        69 ~~L~l~~~~~~~l~~~~~~~~l~~-------------------------~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~  123 (309)
                      +.|+++.+....++..........                         .+++|+.|+++++. +..++...+..+++|+
T Consensus       622 ~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~  700 (876)
T 4ecn_A          622 EGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPTELFATGSPIS  700 (876)
T ss_dssp             CEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCSCCHHHHHTTCCCS
T ss_pred             CEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc-CCccCHHHHccCCCCC
Confidence            888887776654443222111000                         01134444444432 2233322223455666


Q ss_pred             EEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCceecccC-ccC--CCCCccEEEEEcCccccccccccccC
Q 035891          124 ALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVT-WLI--LAPNLKHIEVYNCRYLDEIISLEKLG  200 (309)
Q Consensus       124 ~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l~-~l~--~l~~L~~L~l~~c~~l~~~~~~~~~~  200 (309)
                      .|++++ +.+..++.......   .+....+++|+.|++++|++..+| .+.  .+++|+.|++++|. +..++      
T Consensus       701 ~L~Ls~-N~L~~ip~~~~~~~---~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp------  769 (876)
T 4ecn_A          701 TIILSN-NLMTSIPENSLKPK---DGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNC-FSSFP------  769 (876)
T ss_dssp             EEECCS-CCCSCCCTTSSSCT---TSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSC-CSSCC------
T ss_pred             EEECCC-CcCCccChHHhccc---cccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCC-CCccc------
Confidence            666665 34554444332100   000002348888888888666766 333  67888888888774 44443      


Q ss_pred             CcCcccccCCccCCccceeeccc------cccccccCCCccCCCCccEEeecCcccCCCCCCCCCCCCCcceEEE
Q 035891          201 EVPSEEMQNLFPFARLESLSLYA------LGNLRSIYPKALPFPHLKELEVNLCPKLEKLPFDCTSGQERKLIIK  269 (309)
Q Consensus       201 ~~~~~~~~~~~~~~~L~~L~L~~------~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~  269 (309)
                             ..+..+++|+.|++++      +.-...++.....+++|+.|++++| ++..+|....   ..++.+.
T Consensus       770 -------~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~l~---~~L~~Ld  833 (876)
T 4ecn_A          770 -------TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEKLT---PQLYILD  833 (876)
T ss_dssp             -------CGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSCCC---SSSCEEE
T ss_pred             -------hhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC-CCCccCHhhc---CCCCEEE
Confidence                   4567888899998876      3334556666668889999999988 4577887643   3444443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.68  E-value=5.9e-17  Score=154.28  Aligned_cols=226  Identities=12%  Similarity=0.171  Sum_probs=163.5

Q ss_pred             CCCCCCCcEEecCCCcCCCC------------------Cchhhhc--CCCCCceEEecccCCCCccCCccccCCcccchh
Q 035891            1 LKYLVNLKCLNLEYTYRIYK------------------IPGQVIS--NLKMLEALRMFKCGSSKQESDSILFGGSLVLVE   60 (309)
Q Consensus         1 l~~L~~Lr~L~l~~~~~l~~------------------lp~~~i~--~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~   60 (309)
                      |+++++|++|++++| .++.                  +|.+ ++  ++++|++|++++|.+.            ..++.
T Consensus       202 l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~------------~~~p~  267 (636)
T 4eco_A          202 VMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNL------------TKLPT  267 (636)
T ss_dssp             GGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTC------------SSCCT
T ss_pred             HhcccCCCEEECcCC-ccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCC------------ccChH
Confidence            467899999999999 7888                  9998 88  9999999999999987            67788


Q ss_pred             hhhccCCCceEEEEEec-chh--hhh-hcCCcCccccCCCcCeEEEecCCCCCeecc-cCccccccCCEEEEecCCCCc-
Q 035891           61 ELLGLERLNVLTITLQS-FAA--LHR-LLTSPSLQSIFSNTPSLCLRNCHSLSSLSV-FTLASLRHLEALDMTNCKDLE-  134 (309)
Q Consensus        61 ~l~~L~~L~~L~l~~~~-~~~--l~~-~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~l~-  134 (309)
                      .++.+++|+.|+++.+. ...  ++. +.....+.. +++|+.|+++++. +..+|. ..+..+++|+.|+++++ .+. 
T Consensus       268 ~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~-l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N-~l~g  344 (636)
T 4eco_A          268 FLKALPEMQLINVACNRGISGEQLKDDWQALADAPV-GEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYN-QLEG  344 (636)
T ss_dssp             TTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGG-GGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSC-CCEE
T ss_pred             HHhcCCCCCEEECcCCCCCccccchHHHHhhhcccc-CCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCC-cCcc
Confidence            89999999999998765 442  443 222100011 2379999999965 456762 15889999999999984 566 


Q ss_pred             eEEcCccCcccccCCCcccccCcceEEEeCceecccC-ccCCCCC-ccEEEEEcCccccccccccccCC-----------
Q 035891          135 EMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVT-WLILAPN-LKHIEVYNCRYLDEIISLEKLGE-----------  201 (309)
Q Consensus       135 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l~-~l~~l~~-L~~L~l~~c~~l~~~~~~~~~~~-----------  201 (309)
                      .++ .+.           .+++|+.|++++|++..+| .+..+++ |++|++++|. ++.++.......           
T Consensus       345 ~ip-~~~-----------~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~  411 (636)
T 4eco_A          345 KLP-AFG-----------SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSY  411 (636)
T ss_dssp             ECC-CCE-----------EEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCS
T ss_pred             chh-hhC-----------CCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcC
Confidence            676 333           7899999999999777776 5777888 9999999885 445543211100           


Q ss_pred             --cCcccccCCc-------cCCccceeeccccccccccCCCcc-CCCCccEEeecCcccCCCCCCCC
Q 035891          202 --VPSEEMQNLF-------PFARLESLSLYALGNLRSIYPKAL-PFPHLKELEVNLCPKLEKLPFDC  258 (309)
Q Consensus       202 --~~~~~~~~~~-------~~~~L~~L~L~~~~~L~~l~~~~~-~~~~L~~L~i~~C~~L~~lp~~~  258 (309)
                        ........+.       .+++|++|+++++ .++.++...+ .+++|++|++++| +++.+|...
T Consensus       412 N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~~~  476 (636)
T 4eco_A          412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGN-MLTEIPKNS  476 (636)
T ss_dssp             SCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSS-CCSBCCSSS
T ss_pred             CcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCC-CCCCcCHHH
Confidence              0000001122       4568888888885 6777776555 4888999999887 566777643

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.68  E-value=1.5e-15  Score=142.55  Aligned_cols=114  Identities=14%  Similarity=0.055  Sum_probs=71.5

Q ss_pred             cccCcceEEEeCceecccC----ccCCCCCccEEEEEcCccccccccccccCC-------cCcc--cccCCccC-Cccce
Q 035891          153 GFFSLHKVSIWGSKLRHVT----WLILAPNLKHIEVYNCRYLDEIISLEKLGE-------VPSE--EMQNLFPF-ARLES  218 (309)
Q Consensus       153 ~~~~L~~L~l~~c~l~~l~----~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~-------~~~~--~~~~~~~~-~~L~~  218 (309)
                      .+++|+.|++++|+++.++    .+..+++|++|++++|.....++.......       ....  +......+ ++|++
T Consensus       375 ~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~  454 (562)
T 3a79_B          375 TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKV  454 (562)
T ss_dssp             SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSE
T ss_pred             ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCE
Confidence            5778888888877655543    256677888888877643322332110000       0000  00112233 68999


Q ss_pred             eeccccccccccCCCccCCCCccEEeecCcccCCCCCCC-CCCCCCcceEEE
Q 035891          219 LSLYALGNLRSIYPKALPFPHLKELEVNLCPKLEKLPFD-CTSGQERKLIIK  269 (309)
Q Consensus       219 L~L~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~-~~~~~~~l~~~~  269 (309)
                      |+++++ +++.++...+.+++|+.|+++++ +++.+|.. .... ..++.+.
T Consensus       455 L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l-~~L~~L~  503 (562)
T 3a79_B          455 LDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDRL-TSLQYIW  503 (562)
T ss_dssp             EECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTC-TTCCCEE
T ss_pred             EECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhcC-CCCCEEE
Confidence            999986 78889888889999999999997 78888876 4444 4455444

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.68  E-value=2.2e-16  Score=153.52  Aligned_cols=38  Identities=29%  Similarity=0.191  Sum_probs=21.3

Q ss_pred             CCCCcEEecCCCcCCC-CCchhhhcCCCCCceEEecccCCC
Q 035891            4 LVNLKCLNLEYTYRIY-KIPGQVISNLKMLEALRMFKCGSS   43 (309)
Q Consensus         4 L~~Lr~L~l~~~~~l~-~lp~~~i~~L~~L~~L~l~~~~~~   43 (309)
                      +.+|++|++++| .+. .+|.. ++++++|++|++++|.+.
T Consensus       393 ~~~L~~L~L~~n-~l~~~~p~~-l~~l~~L~~L~Ls~N~l~  431 (768)
T 3rgz_A          393 KNTLQELYLQNN-GFTGKIPPT-LSNCSELVSLHLSFNYLS  431 (768)
T ss_dssp             TCCCCEEECCSS-EEEEECCGG-GGGCTTCCEEECCSSEEE
T ss_pred             cCCccEEECCCC-ccccccCHH-HhcCCCCCEEECcCCccc
Confidence            445666666666 444 45554 556666666666665554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.68  E-value=6.1e-16  Score=141.98  Aligned_cols=146  Identities=21%  Similarity=0.277  Sum_probs=76.7

Q ss_pred             CCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhh
Q 035891            2 KYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAAL   81 (309)
Q Consensus         2 ~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l   81 (309)
                      +++++|++|++++| .+..++.  +.++++|++|++++|.+...              ..++.+++|+.|+++.+....+
T Consensus       174 ~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~~--------------~~~~~l~~L~~L~l~~n~l~~~  236 (466)
T 1o6v_A          174 ANLTTLERLDISSN-KVSDISV--LAKLTNLESLIATNNQISDI--------------TPLGILTNLDELSLNGNQLKDI  236 (466)
T ss_dssp             TTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSCCCCC--------------GGGGGCTTCCEEECCSSCCCCC
T ss_pred             ccCCCCCEEECcCC-cCCCChh--hccCCCCCEEEecCCccccc--------------ccccccCCCCEEECCCCCcccc
Confidence            45666777777776 6666654  66777777777777666421              1145566666666654444333


Q ss_pred             hhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEE
Q 035891           82 HRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVS  161 (309)
Q Consensus        82 ~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~  161 (309)
                      +.+..       +++|+.|+++++. +...+  .+..+++|+.|+++++ .+..++.  ..          .+++|+.|+
T Consensus       237 ~~l~~-------l~~L~~L~l~~n~-l~~~~--~~~~l~~L~~L~l~~n-~l~~~~~--~~----------~l~~L~~L~  293 (466)
T 1o6v_A          237 GTLAS-------LTNLTDLDLANNQ-ISNLA--PLSGLTKLTELKLGAN-QISNISP--LA----------GLTALTNLE  293 (466)
T ss_dssp             GGGGG-------CTTCSEEECCSSC-CCCCG--GGTTCTTCSEEECCSS-CCCCCGG--GT----------TCTTCSEEE
T ss_pred             hhhhc-------CCCCCEEECCCCc-cccch--hhhcCCCCCEEECCCC-ccCcccc--cc----------CCCccCeEE
Confidence            22221       2346666666543 22222  1445556666666553 3333322  11          455555555


Q ss_pred             EeCceecccCccCCCCCccEEEEEcC
Q 035891          162 IWGSKLRHVTWLILAPNLKHIEVYNC  187 (309)
Q Consensus       162 l~~c~l~~l~~l~~l~~L~~L~l~~c  187 (309)
                      +++|++..++.+..+++|++|++++|
T Consensus       294 L~~n~l~~~~~~~~l~~L~~L~L~~n  319 (466)
T 1o6v_A          294 LNENQLEDISPISNLKNLTYLTLYFN  319 (466)
T ss_dssp             CCSSCCSCCGGGGGCTTCSEEECCSS
T ss_pred             cCCCcccCchhhcCCCCCCEEECcCC
Confidence            55554444444455555555555555

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.68  E-value=3.5e-16  Score=133.24  Aligned_cols=178  Identities=20%  Similarity=0.219  Sum_probs=138.6

Q ss_pred             CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhh
Q 035891            5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRL   84 (309)
Q Consensus         5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~   84 (309)
                      .+|++|++++| .++.+|...+.++++|++|++++|.+.            ......+..+++|++|+++.+....++..
T Consensus        37 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~------------~i~~~~~~~l~~L~~L~l~~n~l~~~~~~  103 (270)
T 2o6q_A           37 ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQ------------TLPAGIFKELKNLETLWVTDNKLQALPIG  103 (270)
T ss_dssp             TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCS------------CCCTTTTSSCTTCCEEECCSSCCCCCCTT
T ss_pred             CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccC------------eeChhhhcCCCCCCEEECCCCcCCcCCHh
Confidence            46999999999 899998766999999999999999986            22223457899999999987665544321


Q ss_pred             cCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeC
Q 035891           85 LTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWG  164 (309)
Q Consensus        85 ~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  164 (309)
                       ....    +++|+.|+++++ .+..++...+..+++|+.|++++ +.+..++...+.          .+++|+.|++++
T Consensus       104 -~~~~----l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~----------~l~~L~~L~L~~  166 (270)
T 2o6q_A          104 -VFDQ----LVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGY-NELQSLPKGVFD----------KLTSLKELRLYN  166 (270)
T ss_dssp             -TTTT----CSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTT----------TCTTCCEEECCS
T ss_pred             -Hccc----ccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCC-CcCCccCHhHcc----------CCcccceeEecC
Confidence             1111    457999999995 45666545678899999999999 578877766554          789999999999


Q ss_pred             ceecccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccc
Q 035891          165 SKLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALG  225 (309)
Q Consensus       165 c~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~  225 (309)
                      |.+..++  .+..+++|++|++++| .++.++.            ..+..+++|+.|++.+++
T Consensus       167 n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~------------~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          167 NQLKRVPEGAFDKLTELKTLKLDNN-QLKRVPE------------GAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSS-CCSCCCT------------TTTTTCTTCCEEECCSSC
T ss_pred             CcCcEeChhHhccCCCcCEEECCCC-cCCcCCH------------HHhccccCCCEEEecCCC
Confidence            9777776  3677899999999988 5555543            356789999999999864

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.68  E-value=1.5e-16  Score=150.66  Aligned_cols=195  Identities=15%  Similarity=0.137  Sum_probs=100.1

Q ss_pred             CCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhh
Q 035891            3 YLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALH   82 (309)
Q Consensus         3 ~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~   82 (309)
                      ++.+|++|++++| .++.+| . + .+++|++|++++|...            ...  .+..+++|+.|+++.+......
T Consensus       305 ~~~~L~~L~l~~n-~l~~lp-~-~-~l~~L~~L~l~~n~~~------------~~~--~~~~l~~L~~L~ls~n~l~~~~  366 (606)
T 3vq2_A          305 KHFKWQSLSIIRC-QLKQFP-T-L-DLPFLKSLTLTMNKGS------------ISF--KKVALPSLSYLDLSRNALSFSG  366 (606)
T ss_dssp             TTCCCSEEEEESC-CCSSCC-C-C-CCSSCCEEEEESCSSC------------EEC--CCCCCTTCCEEECCSSCEEEEE
T ss_pred             ccccCCEEEcccc-cCcccc-c-C-CCCccceeeccCCcCc------------cch--hhccCCCCCEEECcCCccCCCc
Confidence            3445555555555 455555 2 3 5556666666555432            111  3445666666666544433221


Q ss_pred             ----hhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEc-CccCcccccCCCcccccCc
Q 035891           83 ----RLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEI-DYAGEEVKRIRETHGFFSL  157 (309)
Q Consensus        83 ----~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~~~~~~~~~~~~L  157 (309)
                          .+..       +++|+.|+++++. +..++ ..+..+++|+.|+++++ .+..+.. ....          .+++|
T Consensus       367 ~~~~~~~~-------~~~L~~L~L~~n~-l~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~----------~l~~L  426 (606)
T 3vq2_A          367 CCSYSDLG-------TNSLRHLDLSFNG-AIIMS-ANFMGLEELQHLDFQHS-TLKRVTEFSAFL----------SLEKL  426 (606)
T ss_dssp             ECCHHHHC-------CSCCCEEECCSCS-EEEEC-CCCTTCTTCCEEECTTS-EEESTTTTTTTT----------TCTTC
T ss_pred             chhhhhcc-------CCcccEeECCCCc-cccch-hhccCCCCCCeeECCCC-ccCCccChhhhh----------ccccC
Confidence                1111       2256666666643 34444 44556666666666663 2222221 2222          45666


Q ss_pred             ceEEEeCceeccc-C-ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCC-Cc
Q 035891          158 HKVSIWGSKLRHV-T-WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYP-KA  234 (309)
Q Consensus       158 ~~L~l~~c~l~~l-~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~-~~  234 (309)
                      +.|++++|.+... + .+..+++|++|++++|.....+++            ..+..+++|++|++++| .++.++. ..
T Consensus       427 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------~~~~~l~~L~~L~Ls~n-~l~~~~~~~~  493 (606)
T 3vq2_A          427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS------------NVFANTTNLTFLDLSKC-QLEQISWGVF  493 (606)
T ss_dssp             CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC------------SCCTTCTTCCEEECTTS-CCCEECTTTT
T ss_pred             CEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchH------------HhhccCCCCCEEECCCC-cCCccChhhh
Confidence            6666666633332 2 345566666666666543332221            34556666666666665 4444433 23


Q ss_pred             cCCCCccEEeecCc
Q 035891          235 LPFPHLKELEVNLC  248 (309)
Q Consensus       235 ~~~~~L~~L~i~~C  248 (309)
                      ..+++|++|++++|
T Consensus       494 ~~l~~L~~L~Ls~N  507 (606)
T 3vq2_A          494 DTLHRLQLLNMSHN  507 (606)
T ss_dssp             TTCTTCCEEECCSS
T ss_pred             cccccCCEEECCCC
Confidence            35666666666666

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.67  E-value=8.4e-16  Score=140.62  Aligned_cols=200  Identities=16%  Similarity=0.174  Sum_probs=114.0

Q ss_pred             CCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhh
Q 035891            2 KYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAAL   81 (309)
Q Consensus         2 ~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l   81 (309)
                      +++++|++|++++| .++.+| + ++.+++|++|++++|.+..+               .++.+++|+.|+++.+....+
T Consensus        39 ~~l~~L~~L~Ls~n-~l~~~~-~-l~~l~~L~~L~Ls~n~l~~~---------------~~~~l~~L~~L~Ls~N~l~~~  100 (457)
T 3bz5_A           39 EQLATLTSLDCHNS-SITDMT-G-IEKLTGLTKLICTSNNITTL---------------DLSQNTNLTYLACDSNKLTNL  100 (457)
T ss_dssp             HHHTTCCEEECCSS-CCCCCT-T-GGGCTTCSEEECCSSCCSCC---------------CCTTCTTCSEEECCSSCCSCC
T ss_pred             hHcCCCCEEEccCC-CcccCh-h-hcccCCCCEEEccCCcCCeE---------------ccccCCCCCEEECcCCCCcee
Confidence            45788999999998 888888 4 88999999999999988632               155566666666654443333


Q ss_pred             hhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcc-----------cccCCC
Q 035891           82 HRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEE-----------VKRIRE  150 (309)
Q Consensus        82 ~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~-----------~~~~~~  150 (309)
                      +    ...    +++|+.|+++++ .++.++   +..+++|+.|++++ +.++.++......+           ...  .
T Consensus       101 ~----~~~----l~~L~~L~L~~N-~l~~l~---~~~l~~L~~L~l~~-N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~  165 (457)
T 3bz5_A          101 D----VTP----LTKLTYLNCDTN-KLTKLD---VSQNPLLTYLNCAR-NTLTEIDVSHNTQLTELDCHLNKKITKL--D  165 (457)
T ss_dssp             C----CTT----CTTCCEEECCSS-CCSCCC---CTTCTTCCEEECTT-SCCSCCCCTTCTTCCEEECTTCSCCCCC--C
T ss_pred             e----cCC----CCcCCEEECCCC-cCCeec---CCCCCcCCEEECCC-CccceeccccCCcCCEEECCCCCccccc--c
Confidence            1    111    335666666554 233332   44455555555554 23333321000000           000  0


Q ss_pred             cccccCcceEEEeCceecccCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeecccccccccc
Q 035891          151 THGFFSLHKVSIWGSKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSI  230 (309)
Q Consensus       151 ~~~~~~L~~L~l~~c~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l  230 (309)
                      ...+++|+.|++++|+++.++ +..+++|++|++++|. ++.+               .++.+++|++|+++++ .++.+
T Consensus       166 ~~~l~~L~~L~ls~n~l~~l~-l~~l~~L~~L~l~~N~-l~~~---------------~l~~l~~L~~L~Ls~N-~l~~i  227 (457)
T 3bz5_A          166 VTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNN-ITKL---------------DLNQNIQLTFLDCSSN-KLTEI  227 (457)
T ss_dssp             CTTCTTCCEEECCSSCCCCCC-CTTCTTCCEEECCSSC-CSCC---------------CCTTCTTCSEEECCSS-CCSCC
T ss_pred             cccCCcCCEEECCCCccceec-cccCCCCCEEECcCCc-CCee---------------ccccCCCCCEEECcCC-ccccc
Confidence            014556666666666555554 5555666666665542 2222               2456677777777774 56666


Q ss_pred             CCCccCCCCccEEeecCcccCCCCC
Q 035891          231 YPKALPFPHLKELEVNLCPKLEKLP  255 (309)
Q Consensus       231 ~~~~~~~~~L~~L~i~~C~~L~~lp  255 (309)
                      +  ...+++|+.|+++++ +++.+|
T Consensus       228 p--~~~l~~L~~L~l~~N-~l~~~~  249 (457)
T 3bz5_A          228 D--VTPLTQLTYFDCSVN-PLTELD  249 (457)
T ss_dssp             C--CTTCTTCSEEECCSS-CCSCCC
T ss_pred             C--ccccCCCCEEEeeCC-cCCCcC
Confidence            5  446677777777776 555555

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.67  E-value=1.7e-16  Score=135.34  Aligned_cols=204  Identities=16%  Similarity=0.143  Sum_probs=118.5

Q ss_pred             CCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhh
Q 035891            3 YLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALH   82 (309)
Q Consensus         3 ~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~   82 (309)
                      .+.+|+.|+++++ .++.++.  ++.+++|++|++++|.+.            .  +..+..+++|+.|+++.+....+.
T Consensus        39 ~l~~L~~L~l~~~-~i~~~~~--l~~l~~L~~L~l~~n~l~------------~--~~~l~~l~~L~~L~L~~n~l~~~~  101 (272)
T 3rfs_A           39 ELNSIDQIIANNS-DIKSVQG--IQYLPNVRYLALGGNKLH------------D--ISALKELTNLTYLILTGNQLQSLP  101 (272)
T ss_dssp             HHTTCCEEECTTS-CCCCCTT--GGGCTTCCEEECTTSCCC------------C--CGGGTTCTTCCEEECTTSCCCCCC
T ss_pred             cccceeeeeeCCC-Ccccccc--cccCCCCcEEECCCCCCC------------C--chhhcCCCCCCEEECCCCccCccC
Confidence            3567788888887 7777765  677888888888877774            1  235667777777777544433222


Q ss_pred             hhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEE
Q 035891           83 RLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSI  162 (309)
Q Consensus        83 ~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l  162 (309)
                      ... ...    +++|+.|+++++. +..++...+..+++|+.|+++++ .+..++.....          .+++|+.|++
T Consensus       102 ~~~-~~~----l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~----------~l~~L~~L~l  164 (272)
T 3rfs_A          102 NGV-FDK----LTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFD----------KLTNLTELDL  164 (272)
T ss_dssp             TTT-TTT----CTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT----------TCTTCCEEEC
T ss_pred             hhH-hcC----CcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCC-ccCccCHHHhc----------cCccCCEEEC
Confidence            100 011    3357777777643 44444334566677777777763 55555544433          5667777777


Q ss_pred             eCceecccCc--cCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCccCCCCc
Q 035891          163 WGSKLRHVTW--LILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALPFPHL  240 (309)
Q Consensus       163 ~~c~l~~l~~--l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L  240 (309)
                      ++|++..++.  +..+++|++|++++|. ++.++.            ..+..+++|++|++.+++ +.      ..+|+|
T Consensus       165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~------------~~~~~l~~L~~L~l~~N~-~~------~~~~~l  224 (272)
T 3rfs_A          165 SYNQLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPD------------GVFDRLTSLQYIWLHDNP-WD------CTCPGI  224 (272)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCT------------TTTTTCTTCCEEECCSSC-BC------CCTTTT
T ss_pred             CCCCcCccCHHHhcCCccCCEEECCCCc-CCccCH------------HHHhCCcCCCEEEccCCC-cc------ccCcHH
Confidence            7775555542  4566777777776653 333332            234566777777777653 21      234556


Q ss_pred             cEEeecCcccCCCCCCCCCC
Q 035891          241 KELEVNLCPKLEKLPFDCTS  260 (309)
Q Consensus       241 ~~L~i~~C~~L~~lp~~~~~  260 (309)
                      +.+++..+.--..+|.....
T Consensus       225 ~~l~~~~n~~~g~ip~~~~~  244 (272)
T 3rfs_A          225 RYLSEWINKHSGVVRNSAGS  244 (272)
T ss_dssp             HHHHHHHHHTGGGBBCTTSC
T ss_pred             HHHHHHHHhCCCcccCcccc
Confidence            66655554333344544433

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.67  E-value=2.3e-16  Score=153.40  Aligned_cols=234  Identities=15%  Similarity=0.072  Sum_probs=136.1

Q ss_pred             CCCCCCcEEecCCCcCCC-CCchhhhcCCCCCceEEecccCCCCc-cCCc---------cccC--CcccchhhhhccCCC
Q 035891            2 KYLVNLKCLNLEYTYRIY-KIPGQVISNLKMLEALRMFKCGSSKQ-ESDS---------ILFG--GSLVLVEELLGLERL   68 (309)
Q Consensus         2 ~~L~~Lr~L~l~~~~~l~-~lp~~~i~~L~~L~~L~l~~~~~~~~-~~~~---------~l~~--~~~~~~~~l~~L~~L   68 (309)
                      +++++|++|++++| .+. .+|.. ++++++|++|++++|.+... |..+         .+..  .....+..++.+++|
T Consensus       415 ~~l~~L~~L~Ls~N-~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L  492 (768)
T 3rgz_A          415 SNCSELVSLHLSFN-YLSGTIPSS-LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL  492 (768)
T ss_dssp             GGCTTCCEEECCSS-EEESCCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred             hcCCCCCEEECcCC-cccCcccHH-HhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCC
Confidence            46677888888887 555 56665 77888888888888777622 1111         0110  012344556666666


Q ss_pred             ceEEEEEecch-hhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcc---
Q 035891           69 NVLTITLQSFA-ALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEE---  144 (309)
Q Consensus        69 ~~L~l~~~~~~-~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~---  144 (309)
                      +.|+++.+... .++.+..  .    +++|+.|++++|.....+| ..+..+++|+.|+++++.-...+|..+....   
T Consensus       493 ~~L~L~~N~l~~~~p~~~~--~----l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~  565 (768)
T 3rgz_A          493 NWISLSNNRLTGEIPKWIG--R----LENLAILKLSNNSFSGNIP-AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI  565 (768)
T ss_dssp             CEEECCSSCCCSCCCGGGG--G----CTTCCEEECCSSCCEEECC-GGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCB
T ss_pred             CEEEccCCccCCcCChHHh--c----CCCCCEEECCCCcccCcCC-HHHcCCCCCCEEECCCCccCCcCChHHhcccchh
Confidence            66666544433 2222211  1    3357777777754433444 4566677777777776432223332111000   


Q ss_pred             --------------------------------------------------------cccCCCcccccCcceEEEeCceec
Q 035891          145 --------------------------------------------------------VKRIRETHGFFSLHKVSIWGSKLR  168 (309)
Q Consensus       145 --------------------------------------------------------~~~~~~~~~~~~L~~L~l~~c~l~  168 (309)
                                                                              +..+.....+++|+.|++++|++.
T Consensus       566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~  645 (768)
T 3rgz_A          566 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS  645 (768)
T ss_dssp             CCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCB
T ss_pred             hhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccc
Confidence                                                                    000001113567788888888544


Q ss_pred             -ccC-ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCccCCCCccEEeec
Q 035891          169 -HVT-WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALPFPHLKELEVN  246 (309)
Q Consensus       169 -~l~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i~  246 (309)
                       .+| .++.+++|+.|++++|.....++             ..++.+++|++|+++++.--..+|.....+++|+.|+++
T Consensus       646 g~ip~~l~~l~~L~~L~Ls~N~l~g~ip-------------~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls  712 (768)
T 3rgz_A          646 GYIPKEIGSMPYLFILNLGHNDISGSIP-------------DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS  712 (768)
T ss_dssp             SCCCGGGGGCTTCCEEECCSSCCCSCCC-------------GGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECC
T ss_pred             ccCCHHHhccccCCEEeCcCCccCCCCC-------------hHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECc
Confidence             344 46777888888888775444554             467788888888888864334667666688888888888


Q ss_pred             CcccCCCCCCC
Q 035891          247 LCPKLEKLPFD  257 (309)
Q Consensus       247 ~C~~L~~lp~~  257 (309)
                      +|+--..+|..
T Consensus       713 ~N~l~g~iP~~  723 (768)
T 3rgz_A          713 NNNLSGPIPEM  723 (768)
T ss_dssp             SSEEEEECCSS
T ss_pred             CCcccccCCCc
Confidence            87544456654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.66  E-value=1.9e-15  Score=148.40  Aligned_cols=45  Identities=22%  Similarity=0.222  Sum_probs=25.9

Q ss_pred             CCCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCc
Q 035891            1 LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQ   45 (309)
Q Consensus         1 l~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~   45 (309)
                      |+++++||+|++++|..+..++.+.++++++|++|++++|.+...
T Consensus        44 ~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~   88 (844)
T 3j0a_A           44 FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL   88 (844)
T ss_dssp             CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE
T ss_pred             CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc
Confidence            345666666666666334445333366666666666666666543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.66  E-value=3.7e-16  Score=152.56  Aligned_cols=232  Identities=13%  Similarity=0.122  Sum_probs=144.7

Q ss_pred             CCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccC-CCCccCCccccCCcc-cchhhhhccC-------CCceEEE
Q 035891            3 YLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCG-SSKQESDSILFGGSL-VLVEELLGLE-------RLNVLTI   73 (309)
Q Consensus         3 ~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~-~~~~~~~~~l~~~~~-~~~~~l~~L~-------~L~~L~l   73 (309)
                      ++++|++|++++|.....+|.. +++|++|++|++++|. +.            . .++..++.+.       +|+.|++
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~Ls~N~~ls------------g~~iP~~i~~L~~~~~~l~~L~~L~L  555 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNRGIS------------AAQLKADWTRLADDEDTGPKIQIFYM  555 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEECTTCTTSC------------HHHHHHHHHHHHHCTTTTTTCCEEEC
T ss_pred             cCCCCCEEECcCCCCCccChHH-HhCCCCCCEEECcCCCCcc------------cccchHHHHhhhhcccccCCccEEEe
Confidence            8999999999999446679986 9999999999999998 64            3 4555555554       8888888


Q ss_pred             EEecchhhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCccc
Q 035891           74 TLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHG  153 (309)
Q Consensus        74 ~~~~~~~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~  153 (309)
                      +.+....++.+.....    +++|+.|+++++. +..++  .+..+++|+.|++++ +.+..++..+.           .
T Consensus       556 s~N~L~~ip~~~~l~~----L~~L~~L~Ls~N~-l~~lp--~~~~L~~L~~L~Ls~-N~l~~lp~~l~-----------~  616 (876)
T 4ecn_A          556 GYNNLEEFPASASLQK----MVKLGLLDCVHNK-VRHLE--AFGTNVKLTDLKLDY-NQIEEIPEDFC-----------A  616 (876)
T ss_dssp             CSSCCCBCCCHHHHTT----CTTCCEEECTTSC-CCBCC--CCCTTSEESEEECCS-SCCSCCCTTSC-----------E
T ss_pred             eCCcCCccCChhhhhc----CCCCCEEECCCCC-cccch--hhcCCCcceEEECcC-CccccchHHHh-----------h
Confidence            7766665544101112    3368888888754 34554  677778888888887 45555554433           5


Q ss_pred             ccC-cceEEEeCceecccCc-cCCC--CCccEEEEEcCcccccccccccc-C-----C-----cCcc---cc-c-CCccC
Q 035891          154 FFS-LHKVSIWGSKLRHVTW-LILA--PNLKHIEVYNCRYLDEIISLEKL-G-----E-----VPSE---EM-Q-NLFPF  213 (309)
Q Consensus       154 ~~~-L~~L~l~~c~l~~l~~-l~~l--~~L~~L~l~~c~~l~~~~~~~~~-~-----~-----~~~~---~~-~-~~~~~  213 (309)
                      +++ |+.|++++|.+..+|. +..+  ++|+.|++++|.....++..... .     .     ....   .. . ....+
T Consensus       617 l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l  696 (876)
T 4ecn_A          617 FTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATG  696 (876)
T ss_dssp             ECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTT
T ss_pred             ccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccC
Confidence            666 7777777775555552 2222  34777777766433222110000 0     0     0000   00 1 12356


Q ss_pred             CccceeeccccccccccCCCccCC--------CCccEEeecCcccCCCCCCCCC--CCCCcceEEE
Q 035891          214 ARLESLSLYALGNLRSIYPKALPF--------PHLKELEVNLCPKLEKLPFDCT--SGQERKLIIK  269 (309)
Q Consensus       214 ~~L~~L~L~~~~~L~~l~~~~~~~--------~~L~~L~i~~C~~L~~lp~~~~--~~~~~l~~~~  269 (309)
                      ++|+.|+++++ .++.++...+..        ++|+.|++++| ++..+|....  .. ..++.+.
T Consensus       697 ~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l-~~L~~L~  759 (876)
T 4ecn_A          697 SPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTL-PYLSNMD  759 (876)
T ss_dssp             CCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTC-TTCCEEE
T ss_pred             CCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-CCccchHHhhhccC-CCcCEEE
Confidence            78888888875 677777655432        27888888887 6777776554  33 4444443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.64  E-value=2.2e-16  Score=137.34  Aligned_cols=218  Identities=17%  Similarity=0.163  Sum_probs=128.6

Q ss_pred             CcEEecCCCcCCCC--Cchhhhc-------CCCCCceEEecccCCCCccCCccccCCcccchhhh--hccCCCceEEEEE
Q 035891            7 LKCLNLEYTYRIYK--IPGQVIS-------NLKMLEALRMFKCGSSKQESDSILFGGSLVLVEEL--LGLERLNVLTITL   75 (309)
Q Consensus         7 Lr~L~l~~~~~l~~--lp~~~i~-------~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l--~~L~~L~~L~l~~   75 (309)
                      |++|+++++ .+..  +|.. +.       ++++|++|++++|.+.            ...+..+  ..+++|+.|+++.
T Consensus        65 L~~L~L~~n-~l~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~n~l~------------~~~~~~~~~~~l~~L~~L~Ls~  130 (312)
T 1wwl_A           65 IKSLSLKRL-TVRAARIPSR-ILFGALRVLGISGLQELTLENLEVT------------GTAPPPLLEATGPDLNILNLRN  130 (312)
T ss_dssp             HHHCCCCEE-EEEEEECBHH-HHHHHHHHHTTSCCCEEEEEEEBCB------------SCCCCCSSSCCSCCCSEEEEES
T ss_pred             Hhhcccccc-cccCCCcCHH-HHHHHHHhcCcCCccEEEccCCccc------------chhHHHHHHhcCCCccEEEccC
Confidence            566777777 5543  5654 44       6778888888887775            3444444  6777888888876


Q ss_pred             ecchhhhhhcC-CcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceE--EcCc-cCcccccCCCc
Q 035891           76 QSFAALHRLLT-SPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEM--EIDY-AGEEVKRIRET  151 (309)
Q Consensus        76 ~~~~~l~~~~~-~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l--~~~~-~~~~~~~~~~~  151 (309)
                      +.....+.... ....  .+++|+.|+++++. +..++...+..+++|+.|+++++.-...+  +... ..         
T Consensus       131 N~l~~~~~~~~~l~~~--~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~---------  198 (312)
T 1wwl_A          131 VSWATRDAWLAELQQW--LKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL---------  198 (312)
T ss_dssp             CBCSSSSSHHHHHHTT--CCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT---------
T ss_pred             CCCcchhHHHHHHHHh--hcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc---------
Confidence            66554321111 0000  01368888888743 45554356677788888888875322221  1111 12         


Q ss_pred             ccccCcceEEEeCceecccC-----ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeecccccc
Q 035891          152 HGFFSLHKVSIWGSKLRHVT-----WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGN  226 (309)
Q Consensus       152 ~~~~~L~~L~l~~c~l~~l~-----~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~  226 (309)
                       .+++|++|++++|++..++     ....+++|++|++++|. ++..++.           .....+++|++|+++++ .
T Consensus       199 -~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~-----------~~~~~l~~L~~L~Ls~N-~  264 (312)
T 1wwl_A          199 -KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAGA-----------PSCDWPSQLNSLNLSFT-G  264 (312)
T ss_dssp             -SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCC-----------SCCCCCTTCCEEECTTS-C
T ss_pred             -cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc-CCcccch-----------hhhhhcCCCCEEECCCC-c
Confidence             5778888888887555332     12356788888887764 3332210           23345678888888875 5


Q ss_pred             ccccCCCccCCCCccEEeecCcccCCCCCCCCCCCCCcceEEE
Q 035891          227 LRSIYPKALPFPHLKELEVNLCPKLEKLPFDCTSGQERKLIIK  269 (309)
Q Consensus       227 L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~  269 (309)
                      ++.++....  ++|++|+++++ +++.+|. .... ..++.+.
T Consensus       265 l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~-~~~l-~~L~~L~  302 (312)
T 1wwl_A          265 LKQVPKGLP--AKLSVLDLSYN-RLDRNPS-PDEL-PQVGNLS  302 (312)
T ss_dssp             CSSCCSSCC--SEEEEEECCSS-CCCSCCC-TTTS-CEEEEEE
T ss_pred             cChhhhhcc--CCceEEECCCC-CCCCChh-HhhC-CCCCEEe
Confidence            677765444  77888888876 6776665 3333 4444443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.64  E-value=4.3e-16  Score=132.89  Aligned_cols=194  Identities=15%  Similarity=0.152  Sum_probs=148.1

Q ss_pred             cEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhcCC
Q 035891            8 KCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLLTS   87 (309)
Q Consensus         8 r~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~~~   87 (309)
                      ..+++.++ .+..+..  ...+++|+.|++.+|.+.              .+.+++.+++|+.|+++.+....++.+.. 
T Consensus        22 ~~l~l~~~-~~~~~~~--~~~l~~L~~L~l~~~~i~--------------~~~~l~~l~~L~~L~l~~n~l~~~~~l~~-   83 (272)
T 3rfs_A           22 IKANLKKK-SVTDAVT--QNELNSIDQIIANNSDIK--------------SVQGIQYLPNVRYLALGGNKLHDISALKE-   83 (272)
T ss_dssp             HHHHHTCS-CTTSEEC--HHHHTTCCEEECTTSCCC--------------CCTTGGGCTTCCEEECTTSCCCCCGGGTT-
T ss_pred             HHHHhcCc-ccccccc--cccccceeeeeeCCCCcc--------------cccccccCCCCcEEECCCCCCCCchhhcC-
Confidence            34455565 5555544  578999999999999885              23468889999999998766555443332 


Q ss_pred             cCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCcee
Q 035891           88 PSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKL  167 (309)
Q Consensus        88 ~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l  167 (309)
                            +++|+.|+++++ .++.++...+..+++|+.|++++ +.+..++.....          .+++|+.|++++|++
T Consensus        84 ------l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~----------~l~~L~~L~L~~n~l  145 (272)
T 3rfs_A           84 ------LTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVE-NQLQSLPDGVFD----------KLTNLTYLNLAHNQL  145 (272)
T ss_dssp             ------CTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTT-SCCCCCCTTTTT----------TCTTCCEEECCSSCC
T ss_pred             ------CCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCC-CcCCccCHHHhc----------cCCCCCEEECCCCcc
Confidence                  447999999996 45666545678899999999998 467777665554          789999999999977


Q ss_pred             cccCc--cCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCc-cCCCCccEEe
Q 035891          168 RHVTW--LILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKA-LPFPHLKELE  244 (309)
Q Consensus       168 ~~l~~--l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~-~~~~~L~~L~  244 (309)
                      ..++.  +..+++|++|++++|. ++.++.            ..+..+++|++|+++++ .++.++... ..+++|+.|+
T Consensus       146 ~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~  211 (272)
T 3rfs_A          146 QSLPKGVFDKLTNLTELDLSYNQ-LQSLPE------------GVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIW  211 (272)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSC-CCCCCT------------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEE
T ss_pred             CccCHHHhccCccCCEEECCCCC-cCccCH------------HHhcCCccCCEEECCCC-cCCccCHHHHhCCcCCCEEE
Confidence            77763  5789999999999984 555542            34678999999999996 687777654 4799999999


Q ss_pred             ecCcccC
Q 035891          245 VNLCPKL  251 (309)
Q Consensus       245 i~~C~~L  251 (309)
                      +++++-.
T Consensus       212 l~~N~~~  218 (272)
T 3rfs_A          212 LHDNPWD  218 (272)
T ss_dssp             CCSSCBC
T ss_pred             ccCCCcc
Confidence            9997544

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.64  E-value=1.3e-15  Score=139.32  Aligned_cols=166  Identities=13%  Similarity=0.076  Sum_probs=82.0

Q ss_pred             CCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCC-------ccccCCc-ccchhhhhccCCCceEEE
Q 035891            2 KYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESD-------SILFGGS-LVLVEELLGLERLNVLTI   73 (309)
Q Consensus         2 ~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~-------~~l~~~~-~~~~~~l~~L~~L~~L~l   73 (309)
                      +++++|++|++++| .++.+|   ++.+++|++|++++|.+...+..       .++.... ..+  .++.+++|+.|++
T Consensus        61 ~~l~~L~~L~Ls~n-~l~~~~---~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l~~l--~~~~l~~L~~L~l  134 (457)
T 3bz5_A           61 EKLTGLTKLICTSN-NITTLD---LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKL--DVSQNPLLTYLNC  134 (457)
T ss_dssp             GGCTTCSEEECCSS-CCSCCC---CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECCSSCCSCC--CCTTCTTCCEEEC
T ss_pred             cccCCCCEEEccCC-cCCeEc---cccCCCCCEEECcCCCCceeecCCCCcCCEEECCCCcCCee--cCCCCCcCCEEEC
Confidence            45667777777777 677665   56777777777777776532210       0000000 011  1445555555555


Q ss_pred             EEecchhhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcc---------
Q 035891           74 TLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEE---------  144 (309)
Q Consensus        74 ~~~~~~~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~---------  144 (309)
                      +.+....+.    ...    +++|+.|+++++.....+   .+..+++|+.|+++++ .++.++......+         
T Consensus       135 ~~N~l~~l~----l~~----l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n-~l~~l~l~~l~~L~~L~l~~N~  202 (457)
T 3bz5_A          135 ARNTLTEID----VSH----NTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFN-KITELDVSQNKLLNRLNCDTNN  202 (457)
T ss_dssp             TTSCCSCCC----CTT----CTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSS-CCCCCCCTTCTTCCEEECCSSC
T ss_pred             CCCccceec----ccc----CCcCCEEECCCCCccccc---ccccCCcCCEEECCCC-ccceeccccCCCCCEEECcCCc
Confidence            433332221    111    334555555554433333   2344555556655552 3333321111000         


Q ss_pred             -cccCCCcccccCcceEEEeCceecccCccCCCCCccEEEEEcCc
Q 035891          145 -VKRIRETHGFFSLHKVSIWGSKLRHVTWLILAPNLKHIEVYNCR  188 (309)
Q Consensus       145 -~~~~~~~~~~~~L~~L~l~~c~l~~l~~l~~l~~L~~L~l~~c~  188 (309)
                       .+ . ....+++|+.|++++|++..+| +..+++|++|++++|.
T Consensus       203 l~~-~-~l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~  244 (457)
T 3bz5_A          203 ITK-L-DLNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNP  244 (457)
T ss_dssp             CSC-C-CCTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSC
T ss_pred             CCe-e-ccccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCCc
Confidence             00 0 0115667777777777666666 6667777777777663

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.64  E-value=3.4e-16  Score=136.21  Aligned_cols=208  Identities=16%  Similarity=0.156  Sum_probs=92.5

Q ss_pred             CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhh-------ccCCCceEEEEEec
Q 035891            5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELL-------GLERLNVLTITLQS   77 (309)
Q Consensus         5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~-------~L~~L~~L~l~~~~   77 (309)
                      .+|++|++++| .+ .+|.+ +...  |++|++++|.+..           ...+..+.       .+++|+.|+++.+.
T Consensus        43 ~~L~~l~l~~n-~l-~~p~~-~~~~--L~~L~L~~n~l~~-----------~~~~~~~~~~~~~~~~l~~L~~L~L~~n~  106 (312)
T 1wwl_A           43 RSLEYLLKRVD-TE-ADLGQ-FTDI--IKSLSLKRLTVRA-----------ARIPSRILFGALRVLGISGLQELTLENLE  106 (312)
T ss_dssp             EECTTHHHHCC-TT-CCCHH-HHHH--HHHCCCCEEEEEE-----------EECBHHHHHHHHHHHTTSCCCEEEEEEEB
T ss_pred             CCceeEeeccc-cc-ccHHH-HHHH--HhhcccccccccC-----------CCcCHHHHHHHHHhcCcCCccEEEccCCc
Confidence            44555566655 44 55554 3322  5555555555521           11222222       45666666665554


Q ss_pred             chh-hhhhcCCcCccccCCCcCeEEEecCCCCCeecccCcccc-----ccCCEEEEecCCCCceEEcCccCcccccCCCc
Q 035891           78 FAA-LHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASL-----RHLEALDMTNCKDLEEMEIDYAGEEVKRIRET  151 (309)
Q Consensus        78 ~~~-l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l-----~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~  151 (309)
                      ... .+.......    +++|+.|+++++. +...+ ..+..+     ++|+.|++++ +.+..++....+         
T Consensus       107 l~~~~~~~~~~~~----l~~L~~L~Ls~N~-l~~~~-~~~~~l~~~~~~~L~~L~L~~-N~l~~~~~~~~~---------  170 (312)
T 1wwl_A          107 VTGTAPPPLLEAT----GPDLNILNLRNVS-WATRD-AWLAELQQWLKPGLKVLSIAQ-AHSLNFSCEQVR---------  170 (312)
T ss_dssp             CBSCCCCCSSSCC----SCCCSEEEEESCB-CSSSS-SHHHHHHTTCCTTCCEEEEES-CSCCCCCTTTCC---------
T ss_pred             ccchhHHHHHHhc----CCCccEEEccCCC-Ccchh-HHHHHHHHhhcCCCcEEEeeC-CCCccchHHHhc---------
Confidence            431 111100011    3356666666532 33332 233333     5566666665 344444433332         


Q ss_pred             ccccCcceEEEeCceecc---c-Cc--cCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccc
Q 035891          152 HGFFSLHKVSIWGSKLRH---V-TW--LILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALG  225 (309)
Q Consensus       152 ~~~~~L~~L~l~~c~l~~---l-~~--l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~  225 (309)
                       .+++|+.|++++|++..   + +.  ...+++|++|++++|. ++.+.....         .....+++|++|+++++ 
T Consensus       171 -~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~---------~~~~~l~~L~~L~Ls~N-  238 (312)
T 1wwl_A          171 -VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCS---------ALAAARVQLQGLDLSHN-  238 (312)
T ss_dssp             -CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHH---------HHHHTTCCCSEEECTTS-
T ss_pred             -cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHH---------HHHhcCCCCCEEECCCC-
Confidence             45566666666553211   1 11  1455666666665552 221110000         11234456666666653 


Q ss_pred             cccccC-CC-ccCCCCccEEeecCcccCCCCCCC
Q 035891          226 NLRSIY-PK-ALPFPHLKELEVNLCPKLEKLPFD  257 (309)
Q Consensus       226 ~L~~l~-~~-~~~~~~L~~L~i~~C~~L~~lp~~  257 (309)
                      .++... .. ...+++|+.|++++| +++.+|..
T Consensus       239 ~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~  271 (312)
T 1wwl_A          239 SLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKG  271 (312)
T ss_dssp             CCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCSS
T ss_pred             cCCcccchhhhhhcCCCCEEECCCC-ccChhhhh
Confidence            344432 11 123456666666655 44455543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.63  E-value=4.2e-15  Score=145.94  Aligned_cols=38  Identities=18%  Similarity=0.163  Sum_probs=29.2

Q ss_pred             CCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCC
Q 035891            4 LVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGS   42 (309)
Q Consensus         4 L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~   42 (309)
                      ..+|++|++++| .++.++.+.++++++|++|++++|..
T Consensus        23 p~~l~~LdLs~N-~i~~i~~~~~~~l~~L~~LdLs~n~~   60 (844)
T 3j0a_A           23 LNTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYT   60 (844)
T ss_dssp             CTTCCEEEEESC-CCCEECSSSCSSCCSCSEEEECTTCC
T ss_pred             CCCcCEEECCCC-cCCccChhHCcccccCeEEeCCCCCC
Confidence            367888888888 78776443488888888888888854

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.63  E-value=2.1e-15  Score=141.05  Aligned_cols=194  Identities=13%  Similarity=0.159  Sum_probs=127.2

Q ss_pred             CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccch---hhhhccCCCceEEEEEecchhh
Q 035891            5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLV---EELLGLERLNVLTITLQSFAAL   81 (309)
Q Consensus         5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~---~~l~~L~~L~~L~l~~~~~~~l   81 (309)
                      .+|++|++++| .+..+|..++..+++|++|++++|.+.            ...+   ..++.+++|+.|+++.+....+
T Consensus       310 ~~L~~L~l~~n-~l~~ip~~~~~~l~~L~~L~Ls~N~l~------------~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~  376 (549)
T 2z81_A          310 EKVKRITVENS-KVFLVPCSFSQHLKSLEFLDLSENLMV------------EEYLKNSACKGAWPSLQTLVLSQNHLRSM  376 (549)
T ss_dssp             TTCCEEEEESS-CCCCCCHHHHHHCTTCCEEECCSSCCC------------HHHHHHHTCTTSSTTCCEEECTTSCCCCH
T ss_pred             ccceEEEeccC-ccccCCHHHHhcCccccEEEccCCccc------------cccccchhhhhccccCcEEEccCCccccc
Confidence            46777777777 777788774457888888888888775            3332   2356778888888876655544


Q ss_pred             hhhc-CCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceE
Q 035891           82 HRLL-TSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKV  160 (309)
Q Consensus        82 ~~~~-~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L  160 (309)
                      +... ....    +++|+.|+++++ .++.++ ..+..+++|+.|+++++ .+..++..             .+++|+.|
T Consensus       377 ~~~~~~~~~----l~~L~~L~Ls~N-~l~~lp-~~~~~~~~L~~L~Ls~N-~l~~l~~~-------------~~~~L~~L  436 (549)
T 2z81_A          377 QKTGEILLT----LKNLTSLDISRN-TFHPMP-DSCQWPEKMRFLNLSST-GIRVVKTC-------------IPQTLEVL  436 (549)
T ss_dssp             HHHHHHGGG----CTTCCEEECTTC-CCCCCC-SCCCCCTTCCEEECTTS-CCSCCCTT-------------SCTTCSEE
T ss_pred             ccchhhhhc----CCCCCEEECCCC-CCccCC-hhhcccccccEEECCCC-Ccccccch-------------hcCCceEE
Confidence            3210 0111    336888888875 445555 34566777888888874 45544321             34678888


Q ss_pred             EEeCceecccCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCC-ccCCCC
Q 035891          161 SIWGSKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPK-ALPFPH  239 (309)
Q Consensus       161 ~l~~c~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~-~~~~~~  239 (309)
                      ++++|+++.++  ..+++|++|++++| .++.++              ....+++|++|+++++ .++.++.+ ...+++
T Consensus       437 ~Ls~N~l~~~~--~~l~~L~~L~Ls~N-~l~~ip--------------~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~  498 (549)
T 2z81_A          437 DVSNNNLDSFS--LFLPRLQELYISRN-KLKTLP--------------DASLFPVLLVMKISRN-QLKSVPDGIFDRLTS  498 (549)
T ss_dssp             ECCSSCCSCCC--CCCTTCCEEECCSS-CCSSCC--------------CGGGCTTCCEEECCSS-CCCCCCTTGGGGCTT
T ss_pred             ECCCCChhhhc--ccCChhcEEECCCC-ccCcCC--------------CcccCccCCEEecCCC-ccCCcCHHHHhcCcc
Confidence            88888666643  56778888888777 455553              2346778888888875 67666654 347788


Q ss_pred             ccEEeecCcc
Q 035891          240 LKELEVNLCP  249 (309)
Q Consensus       240 L~~L~i~~C~  249 (309)
                      |+.|++++|+
T Consensus       499 L~~L~l~~N~  508 (549)
T 2z81_A          499 LQKIWLHTNP  508 (549)
T ss_dssp             CCEEECCSSC
T ss_pred             cCEEEecCCC
Confidence            8888888775

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.62  E-value=9.6e-16  Score=147.02  Aligned_cols=207  Identities=22%  Similarity=0.245  Sum_probs=142.4

Q ss_pred             CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccch-hhhhccCCCceEEEEEecchhhhh
Q 035891            5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLV-EELLGLERLNVLTITLQSFAALHR   83 (309)
Q Consensus         5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~-~~l~~L~~L~~L~l~~~~~~~l~~   83 (309)
                      .+|++|++++| .+..++.+.+..+++|++|++++|.+.            ...+ ..+..+++|+.|+++.+....+..
T Consensus       381 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~------------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  447 (680)
T 1ziw_A          381 SPLHILNLTKN-KISKIESDAFSWLGHLEVLDLGLNEIG------------QELTGQEWRGLENIFEIYLSYNKYLQLTR  447 (680)
T ss_dssp             SCCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCE------------EECCSGGGTTCTTCCEEECCSCSEEECCT
T ss_pred             CcCceEECCCC-CCCeEChhhhhCCCCCCEEeCCCCcCc------------cccCcccccCcccccEEecCCCCcceeCh
Confidence            57999999999 888775555899999999999999885            2233 567788899999887665433221


Q ss_pred             hcCCcCccccCCCcCeEEEecCCC--CCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEE
Q 035891           84 LLTSPSLQSIFSNTPSLCLRNCHS--LSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVS  161 (309)
Q Consensus        84 ~~~~~~l~~~l~~L~~L~l~~~~~--l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~  161 (309)
                      .    .+.. +++|+.|++.++..  ....+ ..+..+++|+.|++++ +.+..++.....          .+++|+.|+
T Consensus       448 ~----~~~~-~~~L~~L~l~~n~l~~~~~~p-~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~----------~l~~L~~L~  510 (680)
T 1ziw_A          448 N----SFAL-VPSLQRLMLRRVALKNVDSSP-SPFQPLRNLTILDLSN-NNIANINDDMLE----------GLEKLEILD  510 (680)
T ss_dssp             T----TTTT-CTTCCEEECTTSCCBCTTCSS-CTTTTCTTCCEEECCS-SCCCCCCTTTTT----------TCTTCCEEE
T ss_pred             h----hhhc-CcccccchhccccccccccCC-cccccCCCCCEEECCC-CCCCcCChhhhc----------cccccCEEe
Confidence            1    1111 44688888887542  12233 3567778888888887 467766655444          678888888


Q ss_pred             EeCceecccC----------ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccC
Q 035891          162 IWGSKLRHVT----------WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIY  231 (309)
Q Consensus       162 l~~c~l~~l~----------~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~  231 (309)
                      +++|++..++          .+..+++|++|++++| .++.++.            ..+..+++|+.|+++++ +++.++
T Consensus       511 Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~------------~~~~~l~~L~~L~Ls~N-~l~~l~  576 (680)
T 1ziw_A          511 LQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPV------------EVFKDLFELKIIDLGLN-NLNTLP  576 (680)
T ss_dssp             CCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCT------------TTTTTCTTCCEEECCSS-CCCCCC
T ss_pred             CCCCCccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCH------------HHcccccCcceeECCCC-CCCcCC
Confidence            8888555431          2566788888888776 4555542            34667788888888774 677777


Q ss_pred             CCcc-CCCCccEEeecCcccCCCCCC
Q 035891          232 PKAL-PFPHLKELEVNLCPKLEKLPF  256 (309)
Q Consensus       232 ~~~~-~~~~L~~L~i~~C~~L~~lp~  256 (309)
                      ...+ .+++|+.|+++++ +++.+|.
T Consensus       577 ~~~~~~l~~L~~L~L~~N-~l~~~~~  601 (680)
T 1ziw_A          577 ASVFNNQVSLKSLNLQKN-LITSVEK  601 (680)
T ss_dssp             TTTTTTCTTCCEEECTTS-CCCBCCH
T ss_pred             HhHhCCCCCCCEEECCCC-cCCccCh
Confidence            6654 6788888888876 5665553

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.62  E-value=1.8e-15  Score=129.13  Aligned_cols=182  Identities=14%  Similarity=0.159  Sum_probs=137.3

Q ss_pred             CCCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchh
Q 035891            1 LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAA   80 (309)
Q Consensus         1 l~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~   80 (309)
                      |+++.+|++|++++| .++.++.+.+.++++|++|++++|.+.            ...+..+..+++|+.|++..+....
T Consensus        48 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~------------~~~~~~~~~l~~L~~L~l~~n~l~~  114 (276)
T 2z62_A           48 FFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQ------------SLALGAFSGLSSLQKLVAVETNLAS  114 (276)
T ss_dssp             TTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCC------------EECTTTTTTCTTCCEEECTTSCCCC
T ss_pred             hccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccC------------ccChhhhcCCccccEEECCCCCccc
Confidence            467899999999999 899888766899999999999999996            4455678899999999997665544


Q ss_pred             hhhhcCCcCccccCCCcCeEEEecCCCCCeecc-cCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcc-
Q 035891           81 LHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSV-FTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLH-  158 (309)
Q Consensus        81 l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~-  158 (309)
                      +.... ...    +++|+.|+++++. +..+.. ..+..+++|+.|++++ +.+..++.....          .+++|+ 
T Consensus       115 ~~~~~-~~~----l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~----------~l~~L~~  177 (276)
T 2z62_A          115 LENFP-IGH----LKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDLR----------VLHQMPL  177 (276)
T ss_dssp             STTCC-CTT----CTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCS-SCCCEECGGGGH----------HHHTCTT
T ss_pred             cCchh-ccc----CCCCCEEECcCCc-cceecCchhhccCCCCCEEECCC-CCCCcCCHHHhh----------hhhhccc
Confidence            43321 112    4579999999954 444321 4678899999999999 578887655443          566666 


Q ss_pred             ---eEEEeCceecccC-ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccc
Q 035891          159 ---KVSIWGSKLRHVT-WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALG  225 (309)
Q Consensus       159 ---~L~l~~c~l~~l~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~  225 (309)
                         .|++++|.+..++ ......+|++|++++|. ++.++.            ..+..+++|+.|++++++
T Consensus       178 l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~------------~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          178 LNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ-LKSVPD------------GIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             CCEEEECCSSCCCEECTTSSCSCCEEEEECCSSC-CSCCCT------------TTTTTCCSCCEEECCSSC
T ss_pred             cceeeecCCCcccccCccccCCCcccEEECCCCc-eeecCH------------hHhcccccccEEEccCCc
Confidence               8899999666665 23344689999999875 666653            345789999999999853

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.62  E-value=1.2e-16  Score=140.31  Aligned_cols=201  Identities=18%  Similarity=0.200  Sum_probs=133.8

Q ss_pred             CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCccc-chhhhhccCCCceEEEEEecchh-h-
Q 035891            5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLV-LVEELLGLERLNVLTITLQSFAA-L-   81 (309)
Q Consensus         5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~-~~~~l~~L~~L~~L~l~~~~~~~-l-   81 (309)
                      .++++|+++++ .+...+.. +.++++|++|++++|.+.            .. .+..+..+++|+.|+++++.... . 
T Consensus        70 ~~l~~L~l~~n-~l~~~~~~-~~~~~~L~~L~L~~~~l~------------~~~~~~~~~~~~~L~~L~L~~~~l~~~~~  135 (336)
T 2ast_B           70 QGVIAFRCPRS-FMDQPLAE-HFSPFRVQHMDLSNSVIE------------VSTLHGILSQCSKLQNLSLEGLRLSDPIV  135 (336)
T ss_dssp             TTCSEEECTTC-EECSCCCS-CCCCBCCCEEECTTCEEC------------HHHHHHHHTTBCCCSEEECTTCBCCHHHH
T ss_pred             ccceEEEcCCc-cccccchh-hccCCCCCEEEccCCCcC------------HHHHHHHHhhCCCCCEEeCcCcccCHHHH
Confidence            57788888888 67766655 677888888888888764            33 56667888889998887654431 2 


Q ss_pred             hhhcCCcCccccCCCcCeEEEecCCCCCeecc-cCccccccCCEEEEecCCCCceEE-cCccCcccccCCCccccc-Ccc
Q 035891           82 HRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSV-FTLASLRHLEALDMTNCKDLEEME-IDYAGEEVKRIRETHGFF-SLH  158 (309)
Q Consensus        82 ~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~~~~~~~~~~~-~L~  158 (309)
                      ..+..       +++|+.|++++|..++.... ..+..+++|+.|++++|..+.... .....          .++ +|+
T Consensus       136 ~~l~~-------~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~----------~l~~~L~  198 (336)
T 2ast_B          136 NTLAK-------NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA----------HVSETIT  198 (336)
T ss_dssp             HHHTT-------CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH----------HSCTTCC
T ss_pred             HHHhc-------CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH----------hcccCCC
Confidence            22222       33688899888765554211 235678888999988875665421 11122          577 888


Q ss_pred             eEEEeCc--eec--ccC-ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCC-
Q 035891          159 KVSIWGS--KLR--HVT-WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYP-  232 (309)
Q Consensus       159 ~L~l~~c--~l~--~l~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~-  232 (309)
                      +|++++|  .+.  .++ .+..+++|++|++++|..+++...            ..+..+++|++|++++|..+..-.. 
T Consensus       199 ~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~------------~~l~~l~~L~~L~l~~~~~~~~~~~~  266 (336)
T 2ast_B          199 QLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF------------QEFFQLNYLQHLSLSRCYDIIPETLL  266 (336)
T ss_dssp             EEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG------------GGGGGCTTCCEEECTTCTTCCGGGGG
T ss_pred             EEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH------------HHHhCCCCCCEeeCCCCCCCCHHHHH
Confidence            8988888  332  233 345688889999888865543321            3566778888888888864432211 


Q ss_pred             CccCCCCccEEeecCc
Q 035891          233 KALPFPHLKELEVNLC  248 (309)
Q Consensus       233 ~~~~~~~L~~L~i~~C  248 (309)
                      ....+++|+.|++++|
T Consensus       267 ~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          267 ELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             GGGGCTTCCEEECTTS
T ss_pred             HHhcCCCCCEEeccCc
Confidence            2336888888888888

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.62  E-value=1.6e-15  Score=131.63  Aligned_cols=175  Identities=21%  Similarity=0.279  Sum_probs=140.3

Q ss_pred             CCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhh
Q 035891            2 KYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAAL   81 (309)
Q Consensus         2 ~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l   81 (309)
                      +.+.+|++|++++| .+..++.  +..+++|++|++++|.+.             . +..+..+++|+.|+++.+....+
T Consensus        60 ~~l~~L~~L~L~~n-~i~~~~~--~~~l~~L~~L~L~~n~l~-------------~-~~~~~~l~~L~~L~l~~n~l~~~  122 (308)
T 1h6u_A           60 QYLNNLIGLELKDN-QITDLAP--LKNLTKITELELSGNPLK-------------N-VSAIAGLQSIKTLDLTSTQITDV  122 (308)
T ss_dssp             GGCTTCCEEECCSS-CCCCCGG--GTTCCSCCEEECCSCCCS-------------C-CGGGTTCTTCCEEECTTSCCCCC
T ss_pred             hccCCCCEEEccCC-cCCCChh--HccCCCCCEEEccCCcCC-------------C-chhhcCCCCCCEEECCCCCCCCc
Confidence            56889999999999 9999987  899999999999999985             2 24688999999999987766655


Q ss_pred             hhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEE
Q 035891           82 HRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVS  161 (309)
Q Consensus        82 ~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~  161 (309)
                      +.+..       +++|+.|+++++ .+..++  .+..+++|+.|+++++ .+..++.  ..          .+++|+.|+
T Consensus       123 ~~l~~-------l~~L~~L~l~~n-~l~~~~--~l~~l~~L~~L~l~~n-~l~~~~~--l~----------~l~~L~~L~  179 (308)
T 1h6u_A          123 TPLAG-------LSNLQVLYLDLN-QITNIS--PLAGLTNLQYLSIGNA-QVSDLTP--LA----------NLSKLTTLK  179 (308)
T ss_dssp             GGGTT-------CTTCCEEECCSS-CCCCCG--GGGGCTTCCEEECCSS-CCCCCGG--GT----------TCTTCCEEE
T ss_pred             hhhcC-------CCCCCEEECCCC-ccCcCc--cccCCCCccEEEccCC-cCCCChh--hc----------CCCCCCEEE
Confidence            44322       457999999996 455553  3788899999999985 6666554  22          789999999


Q ss_pred             EeCceecccCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCC
Q 035891          162 IWGSKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYP  232 (309)
Q Consensus       162 l~~c~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~  232 (309)
                      +++|.+..++.+..+++|++|++++| .+..+.              .+..+++|+.|+++++ .+...+.
T Consensus       180 l~~n~l~~~~~l~~l~~L~~L~L~~N-~l~~~~--------------~l~~l~~L~~L~l~~N-~i~~~~~  234 (308)
T 1h6u_A          180 ADDNKISDISPLASLPNLIEVHLKNN-QISDVS--------------PLANTSNLFIVTLTNQ-TITNQPV  234 (308)
T ss_dssp             CCSSCCCCCGGGGGCTTCCEEECTTS-CCCBCG--------------GGTTCTTCCEEEEEEE-EEECCCE
T ss_pred             CCCCccCcChhhcCCCCCCEEEccCC-ccCccc--------------cccCCCCCCEEEccCC-eeecCCe
Confidence            99998888777889999999999987 455553              3678999999999996 5665543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.62  E-value=7.4e-15  Score=140.85  Aligned_cols=44  Identities=20%  Similarity=0.258  Sum_probs=35.4

Q ss_pred             CCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCcc
Q 035891            2 KYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQE   46 (309)
Q Consensus         2 ~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~   46 (309)
                      +++++||+|++++| .+..+|.+.++++++|++|++++|.+..++
T Consensus        70 ~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~  113 (680)
T 1ziw_A           70 QKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSIQKIK  113 (680)
T ss_dssp             HHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred             hcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCCccCccC
Confidence            45788889999888 888888766888888999999888886443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.62  E-value=2.7e-15  Score=140.78  Aligned_cols=116  Identities=19%  Similarity=0.231  Sum_probs=60.7

Q ss_pred             CCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhh
Q 035891            2 KYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAAL   81 (309)
Q Consensus         2 ~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l   81 (309)
                      +++++|++|++++| .++.++.+.++++++|++|++++|.+.            ...+..+..+++|++|++..+....+
T Consensus        49 ~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~------------~~~~~~~~~l~~L~~L~L~~n~l~~l  115 (570)
T 2z63_A           49 FSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQ------------SLALGAFSGLSSLQKLVAVETNLASL  115 (570)
T ss_dssp             TTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCC------------EECTTTTTTCTTCCEEECTTSCCCCS
T ss_pred             hCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCcCC------------ccCHhhhcCccccccccccccccccC
Confidence            34455555555555 444444333455555555555555543            22334566677777776654444333


Q ss_pred             hhhcCCcCccccCCCcCeEEEecCCCCCe--ecccCccccccCCEEEEecCCCCceEEc
Q 035891           82 HRLLTSPSLQSIFSNTPSLCLRNCHSLSS--LSVFTLASLRHLEALDMTNCKDLEEMEI  138 (309)
Q Consensus        82 ~~~~~~~~l~~~l~~L~~L~l~~~~~l~~--~~~~~l~~l~~L~~L~l~~~~~l~~l~~  138 (309)
                      +... ...    +++|++|+++++. +..  +| ..+.++++|+.|++++ +.+..++.
T Consensus       116 ~~~~-~~~----l~~L~~L~L~~n~-l~~~~lp-~~~~~l~~L~~L~l~~-n~l~~~~~  166 (570)
T 2z63_A          116 ENFP-IGH----LKTLKELNVAHNL-IQSFKLP-EYFSNLTNLEHLDLSS-NKIQSIYC  166 (570)
T ss_dssp             TTCS-CTT----CTTCCEEECCSSC-CCCCCCC-GGGGGCTTCCEEECTT-SCCCEECG
T ss_pred             CCcc-ccc----cccccEEecCCCc-cceecCh-hhhcccCCCCEEeCcC-CccceecH
Confidence            3211 111    4467777777753 333  22 3466677777777776 35555543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.61  E-value=7.4e-15  Score=129.78  Aligned_cols=200  Identities=13%  Similarity=0.113  Sum_probs=154.7

Q ss_pred             CCCCCCCcEEecCCCcCC-CCCchhhhcCCCCCceE-EecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecc
Q 035891            1 LKYLVNLKCLNLEYTYRI-YKIPGQVISNLKMLEAL-RMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSF   78 (309)
Q Consensus         1 l~~L~~Lr~L~l~~~~~l-~~lp~~~i~~L~~L~~L-~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~   78 (309)
                      |++|++|++|++++| .+ +.+|.+++.++++|+++ .+.+|.+.            ...++.++.+++|+.|++..+..
T Consensus        50 f~~l~~L~~L~Ls~N-~i~~~i~~~~f~~L~~l~~~l~~~~N~l~------------~l~~~~f~~l~~L~~L~l~~n~l  116 (350)
T 4ay9_X           50 FSGFGDLEKIEISQN-DVLEVIEADVFSNLPKLHEIRIEKANNLL------------YINPEAFQNLPNLQYLLISNTGI  116 (350)
T ss_dssp             STTCTTCCEEEEECC-TTCCEECTTSBCSCTTCCEEEEEEETTCC------------EECTTSBCCCTTCCEEEEEEECC
T ss_pred             HcCCCCCCEEECcCC-CCCCccChhHhhcchhhhhhhcccCCccc------------ccCchhhhhcccccccccccccc
Confidence            578999999999999 65 66888778999998765 55567775            33456688999999999998877


Q ss_pred             hhhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccc-cCCEEEEecCCCCceEEcCccCcccccCCCcccccCc
Q 035891           79 AALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLR-HLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSL  157 (309)
Q Consensus        79 ~~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~-~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L  157 (309)
                      ..++......     ..++..+++.++..+..++...+..+. .++.|++++ +.++.++...+           ...+|
T Consensus       117 ~~~~~~~~~~-----~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~~f-----------~~~~L  179 (350)
T 4ay9_X          117 KHLPDVHKIH-----SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNSAF-----------NGTQL  179 (350)
T ss_dssp             SSCCCCTTCC-----BSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTTSS-----------TTEEE
T ss_pred             ccCCchhhcc-----cchhhhhhhccccccccccccchhhcchhhhhhcccc-ccccCCChhhc-----------cccch
Confidence            6665433222     224778888888888888755665554 688899998 78999987765           46789


Q ss_pred             ceEEEeCc-eecccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCc
Q 035891          158 HKVSIWGS-KLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKA  234 (309)
Q Consensus       158 ~~L~l~~c-~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~  234 (309)
                      +.|.+.++ .++.+|  .+..+++|++|+++++ .++.++               ...|.+|+.|.+.++..++.+|. .
T Consensus       180 ~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp---------------~~~~~~L~~L~~l~~~~l~~lP~-l  242 (350)
T 4ay9_X          180 DELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLP---------------SYGLENLKKLRARSTYNLKKLPT-L  242 (350)
T ss_dssp             EEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCC---------------SSSCTTCCEEECTTCTTCCCCCC-T
T ss_pred             hHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccC---------------hhhhccchHhhhccCCCcCcCCC-c
Confidence            99999877 888887  3578899999999887 576664               24577888888888888998884 5


Q ss_pred             cCCCCccEEeecC
Q 035891          235 LPFPHLKELEVNL  247 (309)
Q Consensus       235 ~~~~~L~~L~i~~  247 (309)
                      ..+++|+.+++.+
T Consensus       243 ~~l~~L~~l~l~~  255 (350)
T 4ay9_X          243 EKLVALMEASLTY  255 (350)
T ss_dssp             TTCCSCCEEECSC
T ss_pred             hhCcChhhCcCCC
Confidence            6789999999864

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.61  E-value=8e-16  Score=134.13  Aligned_cols=198  Identities=15%  Similarity=0.118  Sum_probs=148.4

Q ss_pred             CCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhc
Q 035891            6 NLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLL   85 (309)
Q Consensus         6 ~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~   85 (309)
                      .++..+++.+ .+...+..++..+++|++|++++|.+.            ...+..+..+++|+.|+++.+.......+.
T Consensus        11 ~l~i~~ls~~-~l~~~~~~~~~~~~~L~~L~L~~n~l~------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~   77 (317)
T 3o53_A           11 RYKIEKVTDS-SLKQALASLRQSAWNVKELDLSGNPLS------------QISAADLAPFTKLELLNLSSNVLYETLDLE   77 (317)
T ss_dssp             EEEEESCCTT-THHHHHHHHHTTGGGCSEEECTTSCCC------------CCCHHHHTTCTTCCEEECTTSCCEEEEEET
T ss_pred             ceeEeecccc-chhhhHHHHhccCCCCCEEECcCCccC------------cCCHHHhhCCCcCCEEECCCCcCCcchhhh
Confidence            3566777777 777667666778889999999999996            455678999999999999766655433322


Q ss_pred             CCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCc
Q 035891           86 TSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGS  165 (309)
Q Consensus        86 ~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c  165 (309)
                         .    +++|+.|+++++. ++.+     ...++|+.|++++ +.+..++..             .+++|+.|++++|
T Consensus        78 ---~----l~~L~~L~Ls~n~-l~~l-----~~~~~L~~L~l~~-n~l~~~~~~-------------~~~~L~~L~l~~N  130 (317)
T 3o53_A           78 ---S----LSTLRTLDLNNNY-VQEL-----LVGPSIETLHAAN-NNISRVSCS-------------RGQGKKNIYLANN  130 (317)
T ss_dssp             ---T----CTTCCEEECCSSE-EEEE-----EECTTCCEEECCS-SCCSEEEEC-------------CCSSCEEEECCSS
T ss_pred             ---h----cCCCCEEECcCCc-cccc-----cCCCCcCEEECCC-CccCCcCcc-------------ccCCCCEEECCCC
Confidence               2    4479999999863 3443     3448999999998 577777643             5789999999999


Q ss_pred             eecccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCC-ccCCccceeeccccccccccCCCccCCCCccE
Q 035891          166 KLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNL-FPFARLESLSLYALGNLRSIYPKALPFPHLKE  242 (309)
Q Consensus       166 ~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~  242 (309)
                      ++..++  .+..+++|++|++++|. +..+..            ..+ ..+++|++|+++++ .++.++... .+++|++
T Consensus       131 ~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~------------~~~~~~l~~L~~L~L~~N-~l~~~~~~~-~l~~L~~  195 (317)
T 3o53_A          131 KITMLRDLDEGCRSRVQYLDLKLNE-IDTVNF------------AELAASSDTLEHLNLQYN-FIYDVKGQV-VFAKLKT  195 (317)
T ss_dssp             CCCSGGGBCTGGGSSEEEEECTTSC-CCEEEG------------GGGGGGTTTCCEEECTTS-CCCEEECCC-CCTTCCE
T ss_pred             CCCCccchhhhccCCCCEEECCCCC-CCcccH------------HHHhhccCcCCEEECCCC-cCccccccc-ccccCCE
Confidence            776664  45678999999999874 444432            223 46899999999996 688775433 5899999


Q ss_pred             EeecCcccCCCCCCCCC
Q 035891          243 LEVNLCPKLEKLPFDCT  259 (309)
Q Consensus       243 L~i~~C~~L~~lp~~~~  259 (309)
                      |++++| +++.+|....
T Consensus       196 L~Ls~N-~l~~l~~~~~  211 (317)
T 3o53_A          196 LDLSSN-KLAFMGPEFQ  211 (317)
T ss_dssp             EECCSS-CCCEECGGGG
T ss_pred             EECCCC-cCCcchhhhc
Confidence            999997 6777765433

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.61  E-value=2.6e-15  Score=129.25  Aligned_cols=172  Identities=17%  Similarity=0.205  Sum_probs=122.2

Q ss_pred             CCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhh
Q 035891            3 YLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALH   82 (309)
Q Consensus         3 ~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~   82 (309)
                      ++.+|++|++++| .+..+|.  +..+++|++|++++|.+.             .... +..+++|+.|+++.+....++
T Consensus        44 ~l~~L~~L~l~~~-~i~~~~~--~~~l~~L~~L~L~~n~l~-------------~~~~-l~~l~~L~~L~l~~n~l~~~~  106 (291)
T 1h6t_A           44 ELNSIDQIIANNS-DIKSVQG--IQYLPNVTKLFLNGNKLT-------------DIKP-LANLKNLGWLFLDENKVKDLS  106 (291)
T ss_dssp             HHHTCCEEECTTS-CCCCCTT--GGGCTTCCEEECCSSCCC-------------CCGG-GTTCTTCCEEECCSSCCCCGG
T ss_pred             hcCcccEEEccCC-CcccChh--HhcCCCCCEEEccCCccC-------------CCcc-cccCCCCCEEECCCCcCCCCh
Confidence            4567889999988 8888875  788999999999988885             2222 778888888888766665554


Q ss_pred             hhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEE
Q 035891           83 RLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSI  162 (309)
Q Consensus        83 ~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l  162 (309)
                      .+..       +++|+.|+++++. +..+  ..+..+++|+.|+++++ .+..+  ....          .+++|+.|++
T Consensus       107 ~l~~-------l~~L~~L~L~~n~-i~~~--~~l~~l~~L~~L~l~~n-~l~~~--~~l~----------~l~~L~~L~L  163 (291)
T 1h6t_A          107 SLKD-------LKKLKSLSLEHNG-ISDI--NGLVHLPQLESLYLGNN-KITDI--TVLS----------RLTKLDTLSL  163 (291)
T ss_dssp             GGTT-------CTTCCEEECTTSC-CCCC--GGGGGCTTCCEEECCSS-CCCCC--GGGG----------GCTTCSEEEC
T ss_pred             hhcc-------CCCCCEEECCCCc-CCCC--hhhcCCCCCCEEEccCC-cCCcc--hhhc----------cCCCCCEEEc
Confidence            4332       3368888888753 4444  35677788888888874 56555  2222          6788888888


Q ss_pred             eCceecccCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeecccccccccc
Q 035891          163 WGSKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSI  230 (309)
Q Consensus       163 ~~c~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l  230 (309)
                      ++|++..++.+..+++|++|++++| .++++.              .+..+++|+.|++.++ .+...
T Consensus       164 ~~N~l~~~~~l~~l~~L~~L~L~~N-~i~~l~--------------~l~~l~~L~~L~l~~n-~i~~~  215 (291)
T 1h6t_A          164 EDNQISDIVPLAGLTKLQNLYLSKN-HISDLR--------------ALAGLKNLDVLELFSQ-ECLNK  215 (291)
T ss_dssp             CSSCCCCCGGGTTCTTCCEEECCSS-CCCBCG--------------GGTTCTTCSEEEEEEE-EEECC
T ss_pred             cCCccccchhhcCCCccCEEECCCC-cCCCCh--------------hhccCCCCCEEECcCC-cccCC
Confidence            8886666655777888888888776 455442              3567788888888875 44443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.61  E-value=3.3e-15  Score=128.59  Aligned_cols=174  Identities=19%  Similarity=0.133  Sum_probs=137.7

Q ss_pred             CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhh
Q 035891            5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRL   84 (309)
Q Consensus         5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~   84 (309)
                      .++++|++++| .++.++...+..+++|++|++++|.+..             +.. .+.+++|+.|+++.+....++..
T Consensus        31 ~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~-------------~~~-~~~l~~L~~L~Ls~N~l~~l~~~   95 (290)
T 1p9a_G           31 KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTK-------------LQV-DGTLPVLGTLDLSHNQLQSLPLL   95 (290)
T ss_dssp             TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCE-------------EEC-CSCCTTCCEEECCSSCCSSCCCC
T ss_pred             CCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCccCc-------------ccC-CCCCCcCCEEECCCCcCCcCchh
Confidence            57999999999 8988866569999999999999999862             222 26899999999987766654432


Q ss_pred             cCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeC
Q 035891           85 LTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWG  164 (309)
Q Consensus        85 ~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  164 (309)
                      .  ..    +++|+.|+++++ .++.++...+..+++|+.|++++ +.+..++...+.          .+++|+.|++++
T Consensus        96 ~--~~----l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~----------~l~~L~~L~L~~  157 (290)
T 1p9a_G           96 G--QT----LPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLT----------PTPKLEKLSLAN  157 (290)
T ss_dssp             T--TT----CTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTT----------TCTTCCEEECTT
T ss_pred             h--cc----CCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCC-CCCCccChhhcc----------cccCCCEEECCC
Confidence            1  12    457999999995 56677655788999999999998 578888776654          789999999999


Q ss_pred             ceecccCc--cCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccc
Q 035891          165 SKLRHVTW--LILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALG  225 (309)
Q Consensus       165 c~l~~l~~--l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~  225 (309)
                      |+++.++.  +..+++|++|+++++ .++.++             ......++|+.|.+.+.+
T Consensus       158 N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip-------------~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          158 NNLTELPAGLLNGLENLDTLLLQEN-SLYTIP-------------KGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSS-CCCCCC-------------TTTTTTCCCSEEECCSCC
T ss_pred             CcCCccCHHHhcCcCCCCEEECCCC-cCCccC-------------hhhcccccCCeEEeCCCC
Confidence            98888873  567899999999887 466665             456677899999999753

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.60  E-value=6.2e-15  Score=138.30  Aligned_cols=226  Identities=15%  Similarity=0.116  Sum_probs=119.6

Q ss_pred             CCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhh
Q 035891            2 KYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAAL   81 (309)
Q Consensus         2 ~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l   81 (309)
                      +++.+|++|++++| .+..+|.. +..+ +|++|++.+|.+..++.               ..+++|+.|++..+.....
T Consensus       279 ~~l~~L~~L~l~~~-~l~~l~~~-~~~~-~L~~L~l~~n~~~~l~~---------------~~l~~L~~L~l~~n~~~~~  340 (570)
T 2z63_A          279 NCLTNVSSFSLVSV-TIERVKDF-SYNF-GWQHLELVNCKFGQFPT---------------LKLKSLKRLTFTSNKGGNA  340 (570)
T ss_dssp             GGGTTCSEEEEESC-EECSCCBC-CSCC-CCSEEEEESCBCSSCCB---------------CBCSSCCEEEEESCBSCCB
T ss_pred             cCcCcccEEEecCc-cchhhhhh-hccC-CccEEeeccCcccccCc---------------ccccccCEEeCcCCccccc
Confidence            45678999999998 88888886 7777 99999999888853322               2455666666654332211


Q ss_pred             hhhcCCcCccccCCCcCeEEEecCCCCCeec--ccCccccccCCEEEEecCCCCceEEcCccC--c----------cccc
Q 035891           82 HRLLTSPSLQSIFSNTPSLCLRNCHSLSSLS--VFTLASLRHLEALDMTNCKDLEEMEIDYAG--E----------EVKR  147 (309)
Q Consensus        82 ~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~--~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~--~----------~~~~  147 (309)
                      ...   ..    +++|+.|+++++. +....  ...+..+++|+.|+++++ .+..++..+..  .          ....
T Consensus       341 ~~~---~~----~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~l~~L~~L~l~~n~l~~~  411 (570)
T 2z63_A          341 FSE---VD----LPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQM  411 (570)
T ss_dssp             CCC---CB----CTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSC-SEEEEEEEEETCTTCCEEECTTSEEESC
T ss_pred             ccc---cc----CCCCCEEeCcCCc-cCccccccccccccCccCEEECCCC-ccccccccccccCCCCEEEccCCccccc
Confidence            110   11    3356666665543 22221  123344555666655552 33333322110  0          0000


Q ss_pred             CC--CcccccCcceEEEeCceeccc-C-ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccc
Q 035891          148 IR--ETHGFFSLHKVSIWGSKLRHV-T-WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYA  223 (309)
Q Consensus       148 ~~--~~~~~~~L~~L~l~~c~l~~l-~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~  223 (309)
                      ..  ....+++|+.|++++|.+... + .+..+++|++|++++|......++            ..+..+++|++|++++
T Consensus       412 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p------------~~~~~l~~L~~L~l~~  479 (570)
T 2z63_A          412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP------------DIFTELRNLTFLDLSQ  479 (570)
T ss_dssp             TTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC------------SCCTTCTTCCEEECTT
T ss_pred             cchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccch------------hhhhcccCCCEEECCC
Confidence            00  000445555555555533222 1 234455566666655542211111            3566778888888887


Q ss_pred             ccccccc-CCCccCCCCccEEeecCcccCCCCCCC-CCCCCCcceEEE
Q 035891          224 LGNLRSI-YPKALPFPHLKELEVNLCPKLEKLPFD-CTSGQERKLIIK  269 (309)
Q Consensus       224 ~~~L~~l-~~~~~~~~~L~~L~i~~C~~L~~lp~~-~~~~~~~l~~~~  269 (309)
                      | .++.+ +.....+++|++|++++| +++.+|.. .... ..++.+.
T Consensus       480 n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l-~~L~~L~  524 (570)
T 2z63_A          480 C-QLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRL-TSLQKIW  524 (570)
T ss_dssp             S-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTC-TTCCEEE
T ss_pred             C-ccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcc-cCCcEEE
Confidence            6 56555 334447788888888887 56666543 3333 4555554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.58  E-value=4.3e-14  Score=131.32  Aligned_cols=103  Identities=15%  Similarity=0.123  Sum_probs=62.1

Q ss_pred             CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhh
Q 035891            5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRL   84 (309)
Q Consensus         5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~   84 (309)
                      .+|++|++++| .++.++.+.+.++++|++|++++|.+.            ...+..++.+++|++|+++.+....++..
T Consensus        21 ~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~------------~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~   87 (520)
T 2z7x_B           21 QKTTILNISQN-YISELWTSDILSLSKLRILIISHNRIQ------------YLDISVFKFNQELEYLDLSHNKLVKISCH   87 (520)
T ss_dssp             TTCSEEECCSS-CCCCCCHHHHTTCTTCCEEECCSSCCC------------EEEGGGGTTCTTCCEEECCSSCCCEEECC
T ss_pred             ccccEEECCCC-cccccChhhccccccccEEecCCCccC------------CcChHHhhcccCCCEEecCCCceeecCcc
Confidence            46788888888 777776544778888888888888775            34455666777777777765554433322


Q ss_pred             cCCcCccccCCCcCeEEEecCCCCCeecc-cCccccccCCEEEEec
Q 035891           85 LTSPSLQSIFSNTPSLCLRNCHSLSSLSV-FTLASLRHLEALDMTN  129 (309)
Q Consensus        85 ~~~~~l~~~l~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~  129 (309)
                          .    +++|++|+++++. +..++. ..++.+++|+.|++++
T Consensus        88 ----~----l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~  124 (520)
T 2z7x_B           88 ----P----TVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLST  124 (520)
T ss_dssp             ----C----CCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEE
T ss_pred             ----c----cCCccEEeccCCc-cccccchhhhccCCcceEEEecC
Confidence                1    3356666666643 222211 2445555555555554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.58  E-value=9.3e-15  Score=123.03  Aligned_cols=173  Identities=16%  Similarity=0.226  Sum_probs=100.0

Q ss_pred             CCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhc
Q 035891            6 NLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLL   85 (309)
Q Consensus         6 ~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~   85 (309)
                      ..++++++++ .++.+|.+ +.  +++++|++++|.+.            ...+..+..+++|+.|+++.+....+..- 
T Consensus        15 ~~~~l~~~~~-~l~~~p~~-~~--~~l~~L~L~~n~l~------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-   77 (251)
T 3m19_A           15 GKKEVDCQGK-SLDSVPSG-IP--ADTEKLDLQSTGLA------------TLSDATFRGLTKLTWLNLDYNQLQTLSAG-   77 (251)
T ss_dssp             GGTEEECTTC-CCSSCCSC-CC--TTCCEEECTTSCCC------------CCCTTTTTTCTTCCEEECTTSCCCCCCTT-
T ss_pred             CCeEEecCCC-CccccCCC-CC--CCCCEEEccCCCcC------------ccCHhHhcCcccCCEEECCCCcCCccCHh-
Confidence            4678999998 89999986 44  68999999999986            33444567777788877754433322110 


Q ss_pred             CCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCc
Q 035891           86 TSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGS  165 (309)
Q Consensus        86 ~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c  165 (309)
                      ....    +++|+.|+++++ .++.++...+..+++|+.|++++ +.+..++...+.          .+++|+.|++++|
T Consensus        78 ~~~~----l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~----------~l~~L~~L~Ls~N  141 (251)
T 3m19_A           78 VFDD----LTELGTLGLANN-QLASLPLGVFDHLTQLDKLYLGG-NQLKSLPSGVFD----------RLTKLKELRLNTN  141 (251)
T ss_dssp             TTTT----CTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTT----------TCTTCCEEECCSS
T ss_pred             Hhcc----CCcCCEEECCCC-cccccChhHhcccCCCCEEEcCC-CcCCCcChhHhc----------cCCcccEEECcCC
Confidence            0011    335666666663 33444433445556666666665 355555444332          4566666666666


Q ss_pred             eecccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeecccc
Q 035891          166 KLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYAL  224 (309)
Q Consensus       166 ~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~  224 (309)
                      ++..++  .+..+++|++|++++| .++.++.            ..+..+++|+.|++.++
T Consensus       142 ~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~------------~~~~~l~~L~~L~l~~N  189 (251)
T 3m19_A          142 QLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPH------------GAFDRLGKLQTITLFGN  189 (251)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCT------------TTTTTCTTCCEEECCSC
T ss_pred             cCCccCHHHcCcCcCCCEEECCCC-cCCccCH------------HHHhCCCCCCEEEeeCC
Confidence            555544  2445566666666554 2333321            23445556666666553

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.56  E-value=5.7e-14  Score=128.36  Aligned_cols=116  Identities=21%  Similarity=0.190  Sum_probs=77.6

Q ss_pred             CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCc------cccCCcccchhhhhccCCCceEEEEEecc
Q 035891            5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDS------ILFGGSLVLVEELLGLERLNVLTITLQSF   78 (309)
Q Consensus         5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~------~l~~~~~~~~~~l~~L~~L~~L~l~~~~~   78 (309)
                      .+|++|++++| .++.+| + ++++++|++|++++|.+..+|...      ++....-..+.+++.+++|+.|+++.+..
T Consensus       131 ~~L~~L~L~~n-~l~~lp-~-~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l  207 (454)
T 1jl5_A          131 PLLEYLGVSNN-QLEKLP-E-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSL  207 (454)
T ss_dssp             TTCCEEECCSS-CCSSCC-C-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCC
T ss_pred             CCCCEEECcCC-CCCCCc-c-cCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcCccccCCCCCCEEECCCCcC
Confidence            57889999988 888888 4 889999999999998887655421      12211111123577888888888876554


Q ss_pred             hhhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceE
Q 035891           79 AALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEM  136 (309)
Q Consensus        79 ~~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l  136 (309)
                      ..++...         ++|+.|+++++ .+..++  .+..+++|+.|+++++ .+..+
T Consensus       208 ~~l~~~~---------~~L~~L~l~~n-~l~~lp--~~~~l~~L~~L~l~~N-~l~~l  252 (454)
T 1jl5_A          208 KKLPDLP---------LSLESIVAGNN-ILEELP--ELQNLPFLTTIYADNN-LLKTL  252 (454)
T ss_dssp             SSCCCCC---------TTCCEEECCSS-CCSSCC--CCTTCTTCCEEECCSS-CCSSC
T ss_pred             CcCCCCc---------CcccEEECcCC-cCCccc--ccCCCCCCCEEECCCC-cCCcc
Confidence            4433221         16888888886 445554  4777888888888873 45443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.56  E-value=6.8e-14  Score=131.28  Aligned_cols=103  Identities=19%  Similarity=0.168  Sum_probs=55.8

Q ss_pred             CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhh
Q 035891            5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRL   84 (309)
Q Consensus         5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~   84 (309)
                      .+|++|++++| .+..+|.+.++++++|++|++++|.+.            ...++.+..+++|++|+++.+....++..
T Consensus        52 ~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~------------~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~  118 (562)
T 3a79_B           52 PRTKALSLSQN-SISELRMPDISFLSELRVLRLSHNRIR------------SLDFHVFLFNQDLEYLDVSHNRLQNISCC  118 (562)
T ss_dssp             TTCCEEECCSS-CCCCCCGGGTTTCTTCCEEECCSCCCC------------EECTTTTTTCTTCCEEECTTSCCCEECSC
T ss_pred             CCcCEEECCCC-CccccChhhhccCCCccEEECCCCCCC------------cCCHHHhCCCCCCCEEECCCCcCCccCcc
Confidence            46777777777 677766444777777777777777775            23344455566666666654443332221


Q ss_pred             cCCcCccccCCCcCeEEEecCCCCCeecc-cCccccccCCEEEEec
Q 035891           85 LTSPSLQSIFSNTPSLCLRNCHSLSSLSV-FTLASLRHLEALDMTN  129 (309)
Q Consensus        85 ~~~~~l~~~l~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~  129 (309)
                          .    +++|+.|+++++. +..++. ..+.++++|+.|++++
T Consensus       119 ----~----l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~  155 (562)
T 3a79_B          119 ----P----MASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSA  155 (562)
T ss_dssp             ----C----CTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEEC
T ss_pred             ----c----cccCCEEECCCCC-ccccCchHhhcccCcccEEecCC
Confidence                1    2245555555532 333322 2344445555555544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.55  E-value=5e-15  Score=128.62  Aligned_cols=202  Identities=14%  Similarity=0.125  Sum_probs=113.5

Q ss_pred             CcEEecCCCcCCCC-----CchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhh--hccCCCceEEEEEecch
Q 035891            7 LKCLNLEYTYRIYK-----IPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEEL--LGLERLNVLTITLQSFA   79 (309)
Q Consensus         7 Lr~L~l~~~~~l~~-----lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l--~~L~~L~~L~l~~~~~~   79 (309)
                      ++.+.+.++ .+..     ++.  ...+++|++|++++|.+.            ...+..+  ..+++|++|+++.+...
T Consensus        66 l~~l~l~~~-~~~~~~~~~~~~--~~~~~~L~~L~l~~n~l~------------~~~~~~~~~~~~~~L~~L~Ls~n~i~  130 (310)
T 4glp_A           66 VRRLTVGAA-QVPAQLLVGALR--VLAYSRLKELTLEDLKIT------------GTMPPLPLEATGLALSSLRLRNVSWA  130 (310)
T ss_dssp             CCEEEECSC-CCBHHHHHHHHH--HHHHSCCCEEEEESCCCB------------SCCCCCSSSCCCBCCSSCEEESCCCS
T ss_pred             eeEEEEeCC-cCCHHHHHHHHH--hcccCceeEEEeeCCEec------------cchhhhhhhccCCCCCEEEeeccccc
Confidence            456666655 4332     111  123456777777777765            3344444  66777777777766554


Q ss_pred             hh----hhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCce--EEcCc-cCcccccCCCcc
Q 035891           80 AL----HRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEE--MEIDY-AGEEVKRIRETH  152 (309)
Q Consensus        80 ~l----~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~--l~~~~-~~~~~~~~~~~~  152 (309)
                      ..    ...... .    +++|+.|+++++. +..++...+..+++|+.|+++++.-...  ++... .+          
T Consensus       131 ~~~~~~~~~~~~-~----~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~----------  194 (310)
T 4glp_A          131 TGRSWLAELQQW-L----KPGLKVLSIAQAH-SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPH----------  194 (310)
T ss_dssp             STTSSHHHHHTT-B----CSCCCEEEEECCS-SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTT----------
T ss_pred             chhhhhHHHHhh-h----ccCCCEEEeeCCC-cchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhh----------
Confidence            31    111111 1    3367777777754 3444434566777777777777432221  21111 11          


Q ss_pred             cccCcceEEEeCceecccCc-----cCCCCCccEEEEEcCccccccccccccCCcCcccccCCcc---CCccceeecccc
Q 035891          153 GFFSLHKVSIWGSKLRHVTW-----LILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFP---FARLESLSLYAL  224 (309)
Q Consensus       153 ~~~~L~~L~l~~c~l~~l~~-----l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~---~~~L~~L~L~~~  224 (309)
                      .+++|++|++++|+++.++.     ++.+++|++|++++|. ++...+            ..+..   +++|++|+++++
T Consensus       195 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p------------~~~~~~~~~~~L~~L~Ls~N  261 (310)
T 4glp_A          195 KFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVN------------PSAPRCMWSSALNSLNLSFA  261 (310)
T ss_dssp             SSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCC------------SCCSSCCCCTTCCCEECCSS
T ss_pred             cCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC-CCccch------------hhHHhccCcCcCCEEECCCC
Confidence            56777777777776554442     2456777777777764 333311            12223   367777777774


Q ss_pred             ccccccCCCccCCCCccEEeecCcccCCCCCC
Q 035891          225 GNLRSIYPKALPFPHLKELEVNLCPKLEKLPF  256 (309)
Q Consensus       225 ~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~  256 (309)
                       .++.++...  +++|+.|++++| +++.+|.
T Consensus       262 -~l~~lp~~~--~~~L~~L~Ls~N-~l~~~~~  289 (310)
T 4glp_A          262 -GLEQVPKGL--PAKLRVLDLSSN-RLNRAPQ  289 (310)
T ss_dssp             -CCCSCCSCC--CSCCSCEECCSC-CCCSCCC
T ss_pred             -CCCchhhhh--cCCCCEEECCCC-cCCCCch
Confidence             566666544  367777777776 5666554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.55  E-value=7.5e-16  Score=135.11  Aligned_cols=204  Identities=19%  Similarity=0.279  Sum_probs=144.1

Q ss_pred             CCCCCCcEEecCCCcCCCC--CchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEe-cc
Q 035891            2 KYLVNLKCLNLEYTYRIYK--IPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQ-SF   78 (309)
Q Consensus         2 ~~L~~Lr~L~l~~~~~l~~--lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~-~~   78 (309)
                      .++.+|++|++++| .+..  +|.. +..+++|++|++++|.+.            ...+..+..+++|+.|+++.+ ..
T Consensus        90 ~~~~~L~~L~L~~~-~l~~~~~~~~-~~~~~~L~~L~L~~~~l~------------~~~~~~l~~~~~L~~L~L~~~~~l  155 (336)
T 2ast_B           90 FSPFRVQHMDLSNS-VIEVSTLHGI-LSQCSKLQNLSLEGLRLS------------DPIVNTLAKNSNLVRLNLSGCSGF  155 (336)
T ss_dssp             CCCBCCCEEECTTC-EECHHHHHHH-HTTBCCCSEEECTTCBCC------------HHHHHHHTTCTTCSEEECTTCBSC
T ss_pred             ccCCCCCEEEccCC-CcCHHHHHHH-HhhCCCCCEEeCcCcccC------------HHHHHHHhcCCCCCEEECCCCCCC
Confidence            46789999999999 6764  6764 899999999999999986            677888999999999999765 23


Q ss_pred             h--hhhhhcCCcCccccCCCcCeEEEecCCCCCeecc-cCccccc-cCCEEEEecCC-CCc--eEEcCccCcccccCCCc
Q 035891           79 A--ALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSV-FTLASLR-HLEALDMTNCK-DLE--EMEIDYAGEEVKRIRET  151 (309)
Q Consensus        79 ~--~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~-~~l~~l~-~L~~L~l~~~~-~l~--~l~~~~~~~~~~~~~~~  151 (309)
                      +  .++....  .    +++|+.|++++|..++.... ..+..++ +|+.|++++|. .+.  .++. ...         
T Consensus       156 ~~~~l~~~~~--~----~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~-~~~---------  219 (336)
T 2ast_B          156 SEFALQTLLS--S----CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST-LVR---------  219 (336)
T ss_dssp             CHHHHHHHHH--H----CTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH-HHH---------
T ss_pred             CHHHHHHHHh--c----CCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH-HHh---------
Confidence            3  2333221  1    34799999999856665321 3467788 99999999974 343  2222 222         


Q ss_pred             ccccCcceEEEeCce-ecc--cCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeecccccccc
Q 035891          152 HGFFSLHKVSIWGSK-LRH--VTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLR  228 (309)
Q Consensus       152 ~~~~~L~~L~l~~c~-l~~--l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~  228 (309)
                       .+++|+.|++++|. +..  ++.+..+++|++|++++|..+.....            ..+..+++|+.|++.+|    
T Consensus       220 -~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~------------~~l~~~~~L~~L~l~~~----  282 (336)
T 2ast_B          220 -RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL------------LELGEIPTLKTLQVFGI----  282 (336)
T ss_dssp             -HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG------------GGGGGCTTCCEEECTTS----
T ss_pred             -hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH------------HHHhcCCCCCEEeccCc----
Confidence             68999999999994 543  44677889999999999974432210            24677999999999998    


Q ss_pred             ccCCCcc-CC-CCccEEeecCcccCCCC
Q 035891          229 SIYPKAL-PF-PHLKELEVNLCPKLEKL  254 (309)
Q Consensus       229 ~l~~~~~-~~-~~L~~L~i~~C~~L~~l  254 (309)
                       ++.... .+ ..|+.|++. |.+++..
T Consensus       283 -i~~~~~~~l~~~l~~L~l~-~n~l~~~  308 (336)
T 2ast_B          283 -VPDGTLQLLKEALPHLQIN-CSHFTTI  308 (336)
T ss_dssp             -SCTTCHHHHHHHSTTSEES-CCCSCCT
T ss_pred             -cCHHHHHHHHhhCcceEEe-cccCccc
Confidence             333221 12 235555565 4566653

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.55  E-value=1.3e-14  Score=136.86  Aligned_cols=173  Identities=17%  Similarity=0.207  Sum_probs=129.8

Q ss_pred             CCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhh
Q 035891            3 YLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALH   82 (309)
Q Consensus         3 ~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~   82 (309)
                      .|.+|++|++++| .+..+|.  +..|++|++|++++|.+.             ..+. +..+++|+.|+++.+....++
T Consensus        41 ~L~~L~~L~l~~n-~i~~l~~--l~~l~~L~~L~Ls~N~l~-------------~~~~-l~~l~~L~~L~Ls~N~l~~l~  103 (605)
T 1m9s_A           41 ELNSIDQIIANNS-DIKSVQG--IQYLPNVTKLFLNGNKLT-------------DIKP-LTNLKNLGWLFLDENKIKDLS  103 (605)
T ss_dssp             HHTTCCCCBCTTC-CCCCCTT--GGGCTTCCEEECTTSCCC-------------CCGG-GGGCTTCCEEECCSSCCCCCT
T ss_pred             cCCCCCEEECcCC-CCCCChH--HccCCCCCEEEeeCCCCC-------------CChh-hccCCCCCEEECcCCCCCCCh
Confidence            4678999999999 8888885  899999999999999885             2222 888999999999876665544


Q ss_pred             hhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEE
Q 035891           83 RLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSI  162 (309)
Q Consensus        83 ~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l  162 (309)
                      .+..       +++|+.|+++++. +..+  ..+..+++|+.|++++| .+..+  ....          .+++|+.|++
T Consensus       104 ~l~~-------l~~L~~L~Ls~N~-l~~l--~~l~~l~~L~~L~Ls~N-~l~~l--~~l~----------~l~~L~~L~L  160 (605)
T 1m9s_A          104 SLKD-------LKKLKSLSLEHNG-ISDI--NGLVHLPQLESLYLGNN-KITDI--TVLS----------RLTKLDTLSL  160 (605)
T ss_dssp             TSTT-------CTTCCEEECTTSC-CCCC--GGGGGCTTCSEEECCSS-CCCCC--GGGG----------SCTTCSEEEC
T ss_pred             hhcc-------CCCCCEEEecCCC-CCCC--ccccCCCccCEEECCCC-ccCCc--hhhc----------ccCCCCEEEC
Confidence            3222       4479999998864 4444  45778889999999884 56655  2222          6889999999


Q ss_pred             eCceecccCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccC
Q 035891          163 WGSKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIY  231 (309)
Q Consensus       163 ~~c~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~  231 (309)
                      ++|.+..++.+..+++|+.|+|++| .+..+              ..+..+++|+.|+|.++ .+...+
T Consensus       161 s~N~l~~~~~l~~l~~L~~L~Ls~N-~i~~l--------------~~l~~l~~L~~L~L~~N-~l~~~p  213 (605)
T 1m9s_A          161 EDNQISDIVPLAGLTKLQNLYLSKN-HISDL--------------RALAGLKNLDVLELFSQ-ECLNKP  213 (605)
T ss_dssp             CSSCCCCCGGGTTCTTCCEEECCSS-CCCBC--------------GGGTTCTTCSEEECCSE-EEECCC
T ss_pred             cCCcCCCchhhccCCCCCEEECcCC-CCCCC--------------hHHccCCCCCEEEccCC-cCcCCc
Confidence            9987777656888899999999887 45554              24677889999999886 454443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.54  E-value=7.6e-15  Score=118.99  Aligned_cols=36  Identities=11%  Similarity=0.193  Sum_probs=19.5

Q ss_pred             CCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCC
Q 035891            4 LVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGS   42 (309)
Q Consensus         4 L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~   42 (309)
                      +.+|++|++++| .+..+| + +..+++|++|++++|.+
T Consensus        43 l~~L~~L~l~~n-~i~~l~-~-l~~l~~L~~L~l~~n~~   78 (197)
T 4ezg_A           43 MNSLTYITLANI-NVTDLT-G-IEYAHNIKDLTINNIHA   78 (197)
T ss_dssp             HHTCCEEEEESS-CCSCCT-T-GGGCTTCSEEEEESCCC
T ss_pred             cCCccEEeccCC-CccChH-H-HhcCCCCCEEEccCCCC
Confidence            345555555555 555555 2 55555555555555543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.54  E-value=1.7e-15  Score=138.40  Aligned_cols=192  Identities=18%  Similarity=0.105  Sum_probs=88.4

Q ss_pred             CCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCC-------------Cc
Q 035891            3 YLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLER-------------LN   69 (309)
Q Consensus         3 ~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~-------------L~   69 (309)
                      +.++||+|++++| .++.+|.+ +++|++|++|++++|.+.            ...+..++.+.+             ++
T Consensus         9 ~~~~L~~L~l~~n-~l~~iP~~-i~~L~~L~~L~l~~n~~~------------~~~p~~~~~l~~L~~l~l~~c~~~~l~   74 (454)
T 1jl5_A            9 SNTFLQEPLRHSS-NLTEMPVE-AENVKSKTEYYNAWSEWE------------RNAPPGNGEQREMAVSRLRDCLDRQAH   74 (454)
T ss_dssp             ---------------------------CCHHHHHHHHHHHH------------HTSCTTSCCCHHHHHHHHHHHHHHTCS
T ss_pred             ccccchhhhcccC-chhhCChh-HhcccchhhhhccCCccc------------ccCCcccccchhcchhhhhhhhccCCC
Confidence            3578999999999 88999998 899999999999998875            233344444333             35


Q ss_pred             eEEEEEecchhhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecC-------------------
Q 035891           70 VLTITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNC-------------------  130 (309)
Q Consensus        70 ~L~l~~~~~~~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~-------------------  130 (309)
                      .|+++++....++.+.         ++|+.|+++++ .++.++.    .+++|+.|+++++                   
T Consensus        75 ~L~l~~~~l~~lp~~~---------~~L~~L~l~~n-~l~~lp~----~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~  140 (454)
T 1jl5_A           75 ELELNNLGLSSLPELP---------PHLESLVASCN-SLTELPE----LPQSLKSLLVDNNNLKALSDLPPLLEYLGVSN  140 (454)
T ss_dssp             EEECTTSCCSCCCSCC---------TTCSEEECCSS-CCSSCCC----CCTTCCEEECCSSCCSCCCSCCTTCCEEECCS
T ss_pred             EEEecCCccccCCCCc---------CCCCEEEccCC-cCCcccc----ccCCCcEEECCCCccCcccCCCCCCCEEECcC
Confidence            5555433333322211         14555555543 2233321    1234555555442                   


Q ss_pred             CCCceEEcCccCcccccCCCcccccCcceEEEeCceecccCccCCCCCccEEEEEcCccccccccccccCCcCcccccCC
Q 035891          131 KDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNL  210 (309)
Q Consensus       131 ~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~  210 (309)
                      +.++.++ . .+          .+++|++|++++|+++.+|.  ..++|++|++++| .++.+              ..+
T Consensus       141 n~l~~lp-~-~~----------~l~~L~~L~l~~N~l~~lp~--~~~~L~~L~L~~n-~l~~l--------------~~~  191 (454)
T 1jl5_A          141 NQLEKLP-E-LQ----------NSSFLKIIDVDNNSLKKLPD--LPPSLEFIAAGNN-QLEEL--------------PEL  191 (454)
T ss_dssp             SCCSSCC-C-CT----------TCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSS-CCSSC--------------CCC
T ss_pred             CCCCCCc-c-cC----------CCCCCCEEECCCCcCcccCC--CcccccEEECcCC-cCCcC--------------ccc
Confidence            2333332 1 11          44555555555554444331  1235555555544 22222              346


Q ss_pred             ccCCccceeeccccccccccCCCccCCCCccEEeecCcccCCCCCC
Q 035891          211 FPFARLESLSLYALGNLRSIYPKALPFPHLKELEVNLCPKLEKLPF  256 (309)
Q Consensus       211 ~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~  256 (309)
                      +.+++|++|++.++ .++.++.   ..++|++|++++| +++.+|.
T Consensus       192 ~~l~~L~~L~l~~N-~l~~l~~---~~~~L~~L~l~~n-~l~~lp~  232 (454)
T 1jl5_A          192 QNLPFLTAIYADNN-SLKKLPD---LPLSLESIVAGNN-ILEELPE  232 (454)
T ss_dssp             TTCTTCCEEECCSS-CCSSCCC---CCTTCCEEECCSS-CCSSCCC
T ss_pred             cCCCCCCEEECCCC-cCCcCCC---CcCcccEEECcCC-cCCcccc
Confidence            77888999999886 5666654   2368899999887 6677774

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.54  E-value=5.7e-14  Score=132.74  Aligned_cols=35  Identities=11%  Similarity=0.132  Sum_probs=26.1

Q ss_pred             CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCC
Q 035891            5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSK   44 (309)
Q Consensus         5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~   44 (309)
                      .+|++|++++| .++.+|.    .+++|++|++++|.+..
T Consensus        61 ~~L~~L~L~~N-~l~~lp~----~l~~L~~L~Ls~N~l~~   95 (622)
T 3g06_A           61 AHITTLVIPDN-NLTSLPA----LPPELRTLEVSGNQLTS   95 (622)
T ss_dssp             TTCSEEEECSC-CCSCCCC----CCTTCCEEEECSCCCSC
T ss_pred             CCCcEEEecCC-CCCCCCC----cCCCCCEEEcCCCcCCc
Confidence            46788888888 7777775    46778888888877753

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.53  E-value=4e-14  Score=119.11  Aligned_cols=155  Identities=17%  Similarity=0.188  Sum_probs=123.2

Q ss_pred             CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhh
Q 035891            5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRL   84 (309)
Q Consensus         5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~   84 (309)
                      .+|++|++++| .+..++...++++++|++|++++|.+.            ...+..+..+++|+.|+++.+....++.-
T Consensus        35 ~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  101 (251)
T 3m19_A           35 ADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQ------------TLSAGVFDDLTELGTLGLANNQLASLPLG  101 (251)
T ss_dssp             TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCC------------CCCTTTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred             CCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCcCC------------ccCHhHhccCCcCCEEECCCCcccccChh
Confidence            46999999999 898887766999999999999999996            44455678899999999976665543321


Q ss_pred             cCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeC
Q 035891           85 LTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWG  164 (309)
Q Consensus        85 ~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  164 (309)
                      . ...    +++|+.|+++++ .++.++...+..+++|+.|++++ +.+..++...+.          .+++|+.|++++
T Consensus       102 ~-~~~----l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~----------~l~~L~~L~L~~  164 (251)
T 3m19_A          102 V-FDH----LTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNT-NQLQSIPAGAFD----------KLTNLQTLSLST  164 (251)
T ss_dssp             T-TTT----CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTT----------TCTTCCEEECCS
T ss_pred             H-hcc----cCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcC-CcCCccCHHHcC----------cCcCCCEEECCC
Confidence            0 111    457999999995 56677645678899999999998 578888775554          789999999999


Q ss_pred             ceecccC--ccCCCCCccEEEEEcCcc
Q 035891          165 SKLRHVT--WLILAPNLKHIEVYNCRY  189 (309)
Q Consensus       165 c~l~~l~--~l~~l~~L~~L~l~~c~~  189 (309)
                      |++..++  .+..+++|++|++++++.
T Consensus       165 N~l~~~~~~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          165 NQLQSVPHGAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred             CcCCccCHHHHhCCCCCCEEEeeCCce
Confidence            9777776  467789999999998753

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.50  E-value=2.6e-13  Score=128.21  Aligned_cols=54  Identities=11%  Similarity=0.131  Sum_probs=40.2

Q ss_pred             CCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecch
Q 035891            6 NLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFA   79 (309)
Q Consensus         6 ~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~   79 (309)
                      ++++|+++++ .++.+|.. +.  ++|++|++++|.+..+|.                .+++|++|+++++...
T Consensus        41 ~l~~L~ls~n-~L~~lp~~-l~--~~L~~L~L~~N~l~~lp~----------------~l~~L~~L~Ls~N~l~   94 (622)
T 3g06_A           41 GNAVLNVGES-GLTTLPDC-LP--AHITTLVIPDNNLTSLPA----------------LPPELRTLEVSGNQLT   94 (622)
T ss_dssp             CCCEEECCSS-CCSCCCSC-CC--TTCSEEEECSCCCSCCCC----------------CCTTCCEEEECSCCCS
T ss_pred             CCcEEEecCC-CcCccChh-hC--CCCcEEEecCCCCCCCCC----------------cCCCCCEEEcCCCcCC
Confidence            5899999999 89999987 54  899999999999864322                3456666666544433

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.49  E-value=3.7e-14  Score=123.11  Aligned_cols=202  Identities=20%  Similarity=0.178  Sum_probs=142.3

Q ss_pred             CCCCcEEecCCCcCCC-CCchhhh--cCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchh
Q 035891            4 LVNLKCLNLEYTYRIY-KIPGQVI--SNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAA   80 (309)
Q Consensus         4 L~~Lr~L~l~~~~~l~-~lp~~~i--~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~   80 (309)
                      +.+|++|++++| .+. .+|.. +  +.+++|++|++++|.+....+        ......+..+++|+.|+++.+....
T Consensus        90 ~~~L~~L~l~~n-~l~~~~~~~-~~~~~~~~L~~L~Ls~n~i~~~~~--------~~~~~~~~~~~~L~~L~Ls~n~l~~  159 (310)
T 4glp_A           90 YSRLKELTLEDL-KITGTMPPL-PLEATGLALSSLRLRNVSWATGRS--------WLAELQQWLKPGLKVLSIAQAHSPA  159 (310)
T ss_dssp             HSCCCEEEEESC-CCBSCCCCC-SSSCCCBCCSSCEEESCCCSSTTS--------SHHHHHTTBCSCCCEEEEECCSSCC
T ss_pred             cCceeEEEeeCC-Eeccchhhh-hhhccCCCCCEEEeecccccchhh--------hhHHHHhhhccCCCEEEeeCCCcch
Confidence            356999999999 766 46665 5  899999999999999862100        0011345679999999998776644


Q ss_pred             hhhhcCCcCccccCCCcCeEEEecCCCCCe--eccc-CccccccCCEEEEecCCCCceEEcC---ccCcccccCCCcccc
Q 035891           81 LHRLLTSPSLQSIFSNTPSLCLRNCHSLSS--LSVF-TLASLRHLEALDMTNCKDLEEMEID---YAGEEVKRIRETHGF  154 (309)
Q Consensus        81 l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~--~~~~-~l~~l~~L~~L~l~~~~~l~~l~~~---~~~~~~~~~~~~~~~  154 (309)
                      +..-    .+.. +++|+.|+++++.....  ++.. .+..+++|+.|++++| .++.++..   ...          .+
T Consensus       160 ~~~~----~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~----------~l  223 (310)
T 4glp_A          160 FSCE----QVRA-FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAA----------AG  223 (310)
T ss_dssp             CCTT----SCCC-CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHH----------HT
T ss_pred             hhHH----Hhcc-CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHh----------cC
Confidence            3311    1111 45799999999764332  2212 3467899999999995 66654432   112          57


Q ss_pred             cCcceEEEeCceeccc-C-ccCC---CCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccc
Q 035891          155 FSLHKVSIWGSKLRHV-T-WLIL---APNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRS  229 (309)
Q Consensus       155 ~~L~~L~l~~c~l~~l-~-~l~~---l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~  229 (309)
                      ++|++|++++|++..+ | .+..   +++|++|++++| .++.++             ..+  +++|++|+++++ .++.
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp-------------~~~--~~~L~~L~Ls~N-~l~~  286 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVP-------------KGL--PAKLRVLDLSSN-RLNR  286 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCC-------------SCC--CSCCSCEECCSC-CCCS
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchh-------------hhh--cCCCCEEECCCC-cCCC
Confidence            9999999999966665 3 2333   479999999887 455554             222  489999999995 7888


Q ss_pred             cCCCccCCCCccEEeecCcc
Q 035891          230 IYPKALPFPHLKELEVNLCP  249 (309)
Q Consensus       230 l~~~~~~~~~L~~L~i~~C~  249 (309)
                      ++. ...+++|+.|++++++
T Consensus       287 ~~~-~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          287 APQ-PDELPEVDNLTLDGNP  305 (310)
T ss_dssp             CCC-TTSCCCCSCEECSSTT
T ss_pred             Cch-hhhCCCccEEECcCCC
Confidence            765 5678999999999863

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.49  E-value=1.2e-13  Score=128.98  Aligned_cols=183  Identities=16%  Similarity=0.119  Sum_probs=136.8

Q ss_pred             CCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhc
Q 035891            6 NLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLL   85 (309)
Q Consensus         6 ~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~   85 (309)
                      +|++|++++| .++.+|.+ +  +++|++|++++|.+.             .++   ..+++|+.|+++.+....++.  
T Consensus        60 ~L~~L~Ls~n-~L~~lp~~-l--~~~L~~L~Ls~N~l~-------------~ip---~~l~~L~~L~Ls~N~l~~ip~--  117 (571)
T 3cvr_A           60 QFSELQLNRL-NLSSLPDN-L--PPQITVLEITQNALI-------------SLP---ELPASLEYLDACDNRLSTLPE--  117 (571)
T ss_dssp             TCSEEECCSS-CCSCCCSC-C--CTTCSEEECCSSCCS-------------CCC---CCCTTCCEEECCSSCCSCCCC--
T ss_pred             CccEEEeCCC-CCCccCHh-H--cCCCCEEECcCCCCc-------------ccc---cccCCCCEEEccCCCCCCcch--
Confidence            7999999999 89999987 4  388999999999985             233   457999999998776665544  


Q ss_pred             CCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCc
Q 035891           86 TSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGS  165 (309)
Q Consensus        86 ~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c  165 (309)
                          +..   +|+.|+++++ .++.++.    .+++|+.|++++ +.+..++.              .+++|+.|++++|
T Consensus       118 ----l~~---~L~~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~-N~l~~lp~--------------~l~~L~~L~Ls~N  170 (571)
T 3cvr_A          118 ----LPA---SLKHLDVDNN-QLTMLPE----LPALLEYINADN-NQLTMLPE--------------LPTSLEVLSVRNN  170 (571)
T ss_dssp             ----CCT---TCCEEECCSS-CCSCCCC----CCTTCCEEECCS-SCCSCCCC--------------CCTTCCEEECCSS
T ss_pred             ----hhc---CCCEEECCCC-cCCCCCC----cCccccEEeCCC-CccCcCCC--------------cCCCcCEEECCCC
Confidence                121   6999999995 4566653    578999999998 56665542              4689999999999


Q ss_pred             eecccCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCccCCCCccEEee
Q 035891          166 KLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALPFPHLKELEV  245 (309)
Q Consensus       166 ~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i  245 (309)
                      ++..+|.+.  ++|++|++++| .++.++. ...        .-....+.|+.|+++++ .++.+|...+.+++|+.|++
T Consensus       171 ~L~~lp~l~--~~L~~L~Ls~N-~L~~lp~-~~~--------~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L  237 (571)
T 3cvr_A          171 QLTFLPELP--ESLEALDVSTN-LLESLPA-VPV--------RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIIL  237 (571)
T ss_dssp             CCSCCCCCC--TTCCEEECCSS-CCSSCCC-CC----------------CCEEEECCSS-CCCCCCGGGGGSCTTEEEEC
T ss_pred             CCCCcchhh--CCCCEEECcCC-CCCchhh-HHH--------hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEe
Confidence            888887633  89999999987 4655541 000        00011123399999995 78999988888999999999


Q ss_pred             cCccc
Q 035891          246 NLCPK  250 (309)
Q Consensus       246 ~~C~~  250 (309)
                      ++++-
T Consensus       238 ~~N~l  242 (571)
T 3cvr_A          238 EDNPL  242 (571)
T ss_dssp             CSSSC
T ss_pred             eCCcC
Confidence            99753

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.48  E-value=4e-15  Score=133.15  Aligned_cols=218  Identities=15%  Similarity=0.108  Sum_probs=126.5

Q ss_pred             CCCCCCcEEecCCCcCCC----CCchhh------hcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceE
Q 035891            2 KYLVNLKCLNLEYTYRIY----KIPGQV------ISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVL   71 (309)
Q Consensus         2 ~~L~~Lr~L~l~~~~~l~----~lp~~~------i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L   71 (309)
                      .++++|++|++++| .+.    .+|.++      +..+++|++|++++|.+..        .....++..+..+++|+.|
T Consensus        57 ~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~--------~~~~~l~~~l~~~~~L~~L  127 (386)
T 2ca6_A           57 ASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP--------TAQEPLIDFLSKHTPLEHL  127 (386)
T ss_dssp             TTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT--------TTHHHHHHHHHHCTTCCEE
T ss_pred             HhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH--------HHHHHHHHHHHhCCCCCEE
Confidence            35666677777665 333    234431      2566777777777666641        0001355667778888888


Q ss_pred             EEEEecchhhh--hhcCC-cCcc-----ccCCCcCeEEEecCCCC-Ceecc--cCccccccCCEEEEecCCCCceE----
Q 035891           72 TITLQSFAALH--RLLTS-PSLQ-----SIFSNTPSLCLRNCHSL-SSLSV--FTLASLRHLEALDMTNCKDLEEM----  136 (309)
Q Consensus        72 ~l~~~~~~~l~--~~~~~-~~l~-----~~l~~L~~L~l~~~~~l-~~~~~--~~l~~l~~L~~L~l~~~~~l~~l----  136 (309)
                      +++.+......  .+... ..+.     +..++|+.|++++|.-. ..++.  ..+..+++|+.|++++| .+...    
T Consensus       128 ~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~  206 (386)
T 2ca6_A          128 YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEH  206 (386)
T ss_dssp             ECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHH
T ss_pred             ECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHH
Confidence            88766554211  11110 0000     00036888888886432 12221  14456778888888885 44421    


Q ss_pred             -EcCccCcccccCCCcccccCcceEEEeCcee-----cccC-ccCCCCCccEEEEEcCccccccccccccCCcCcccccC
Q 035891          137 -EIDYAGEEVKRIRETHGFFSLHKVSIWGSKL-----RHVT-WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQN  209 (309)
Q Consensus       137 -~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l-----~~l~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~  209 (309)
                       ......          .+++|+.|++++|.+     ..++ .+..+++|++|++++|. +.......      ..  ..
T Consensus       207 l~~~~l~----------~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~------l~--~~  267 (386)
T 2ca6_A          207 LLLEGLA----------YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAA------VV--DA  267 (386)
T ss_dssp             HHHTTGG----------GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHH------HH--HH
T ss_pred             HHHHHhh----------cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHH------HH--HH
Confidence             111222          678999999998855     3333 46678899999998875 33220000      00  12


Q ss_pred             C--ccCCccceeeccccccccc-----cCCCc-cCCCCccEEeecCcc
Q 035891          210 L--FPFARLESLSLYALGNLRS-----IYPKA-LPFPHLKELEVNLCP  249 (309)
Q Consensus       210 ~--~~~~~L~~L~L~~~~~L~~-----l~~~~-~~~~~L~~L~i~~C~  249 (309)
                      +  +.+++|++|++++| .++.     ++... ..+++|+.|++++|+
T Consensus       268 l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          268 FSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             HHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             HhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence            2  34899999999986 5655     55544 358999999999874

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.48  E-value=1.2e-13  Score=118.88  Aligned_cols=148  Identities=20%  Similarity=0.309  Sum_probs=121.6

Q ss_pred             CCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhh
Q 035891            2 KYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAAL   81 (309)
Q Consensus         2 ~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l   81 (309)
                      +.+.+|++|++++| .++.++.  +.++++|++|++++|.+.             . +..+..+++|+.|+++.+....+
T Consensus        65 ~~l~~L~~L~L~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~-------------~-~~~l~~l~~L~~L~L~~n~i~~~  127 (291)
T 1h6t_A           65 QYLPNVTKLFLNGN-KLTDIKP--LANLKNLGWLFLDENKVK-------------D-LSSLKDLKKLKSLSLEHNGISDI  127 (291)
T ss_dssp             GGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCC-------------C-GGGGTTCTTCCEEECTTSCCCCC
T ss_pred             hcCCCCCEEEccCC-ccCCCcc--cccCCCCCEEECCCCcCC-------------C-ChhhccCCCCCEEECCCCcCCCC
Confidence            56789999999999 9999987  899999999999999985             2 34589999999999987766655


Q ss_pred             hhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEE
Q 035891           82 HRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVS  161 (309)
Q Consensus        82 ~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~  161 (309)
                      +.+..       +++|+.|+++++. +..+  ..+..+++|+.|+++++ .+..++.  ..          .+++|+.|+
T Consensus       128 ~~l~~-------l~~L~~L~l~~n~-l~~~--~~l~~l~~L~~L~L~~N-~l~~~~~--l~----------~l~~L~~L~  184 (291)
T 1h6t_A          128 NGLVH-------LPQLESLYLGNNK-ITDI--TVLSRLTKLDTLSLEDN-QISDIVP--LA----------GLTKLQNLY  184 (291)
T ss_dssp             GGGGG-------CTTCCEEECCSSC-CCCC--GGGGGCTTCSEEECCSS-CCCCCGG--GT----------TCTTCCEEE
T ss_pred             hhhcC-------CCCCCEEEccCCc-CCcc--hhhccCCCCCEEEccCC-ccccchh--hc----------CCCccCEEE
Confidence            43333       4479999999964 4555  46788999999999984 6776654  32          789999999


Q ss_pred             EeCceecccCccCCCCCccEEEEEcCcc
Q 035891          162 IWGSKLRHVTWLILAPNLKHIEVYNCRY  189 (309)
Q Consensus       162 l~~c~l~~l~~l~~l~~L~~L~l~~c~~  189 (309)
                      +++|.+..++.+..+++|+.|++++|.-
T Consensus       185 L~~N~i~~l~~l~~l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          185 LSKNHISDLRALAGLKNLDVLELFSQEC  212 (291)
T ss_dssp             CCSSCCCBCGGGTTCTTCSEEEEEEEEE
T ss_pred             CCCCcCCCChhhccCCCCCEEECcCCcc
Confidence            9999888888888999999999998753

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.46  E-value=4.6e-16  Score=145.79  Aligned_cols=212  Identities=17%  Similarity=0.108  Sum_probs=145.7

Q ss_pred             CCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCC-ccCCccccCCcccchhhhhccCCCceEE-EEEecch
Q 035891            2 KYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSK-QESDSILFGGSLVLVEELLGLERLNVLT-ITLQSFA   79 (309)
Q Consensus         2 ~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~-~~~~~~l~~~~~~~~~~l~~L~~L~~L~-l~~~~~~   79 (309)
                      ...++|+.|++++| .++.+|.+ |++|++|+.|++++|.... .+.-..-.......+..++.+++|+.|+ +..+...
T Consensus       346 ~~~~~L~~L~Ls~n-~L~~Lp~~-i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~  423 (567)
T 1dce_A          346 ATDEQLFRCELSVE-KSTVLQSE-LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD  423 (567)
T ss_dssp             STTTTSSSCCCCHH-HHHHHHHH-HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             ccCccceeccCChh-hHHhhHHH-HHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence            45788999999999 89999998 9999999999997654100 0000000001134556677777777776 3322222


Q ss_pred             hhhhhcC-CcCccc-cCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCc
Q 035891           80 ALHRLLT-SPSLQS-IFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSL  157 (309)
Q Consensus        80 ~l~~~~~-~~~l~~-~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L  157 (309)
                      .++...- ...+.. +...|+.|+++++ .++.+|  .+..+++|+.|++++ +.+..+|..+.           .+++|
T Consensus       424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp--~~~~l~~L~~L~Ls~-N~l~~lp~~~~-----------~l~~L  488 (567)
T 1dce_A          424 DLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLC--HLEQLLLVTHLDLSH-NRLRALPPALA-----------ALRCL  488 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCC--CGGGGTTCCEEECCS-SCCCCCCGGGG-----------GCTTC
T ss_pred             hhhhhhhhcccccccCccCceEEEecCC-CCCCCc--CccccccCcEeecCc-ccccccchhhh-----------cCCCC
Confidence            2221100 000000 0115889999985 566675  388999999999998 57887776444           78999


Q ss_pred             ceEEEeCceecccCccCCCCCccEEEEEcCccccccc-cccccCCcCcccccCCccCCccceeeccccccccccCCCcc-
Q 035891          158 HKVSIWGSKLRHVTWLILAPNLKHIEVYNCRYLDEII-SLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKAL-  235 (309)
Q Consensus       158 ~~L~l~~c~l~~l~~l~~l~~L~~L~l~~c~~l~~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~-  235 (309)
                      +.|++++|+++.+|.++.+++|++|++++| .++.++ +            ..++.+++|+.|+++++ .++.++.... 
T Consensus       489 ~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N-~l~~~~~p------------~~l~~l~~L~~L~L~~N-~l~~~~~~~~~  554 (567)
T 1dce_A          489 EVLQASDNALENVDGVANLPRLQELLLCNN-RLQQSAAI------------QPLVSCPRLVLLNLQGN-SLCQEEGIQER  554 (567)
T ss_dssp             CEEECCSSCCCCCGGGTTCSSCCEEECCSS-CCCSSSTT------------GGGGGCTTCCEEECTTS-GGGGSSSCTTH
T ss_pred             CEEECCCCCCCCCcccCCCCCCcEEECCCC-CCCCCCCc------------HHHhcCCCCCEEEecCC-cCCCCccHHHH
Confidence            999999998888888889999999999887 455552 2            56788999999999995 6777765433 


Q ss_pred             ---CCCCccEEe
Q 035891          236 ---PFPHLKELE  244 (309)
Q Consensus       236 ---~~~~L~~L~  244 (309)
                         .+|+|+.|+
T Consensus       555 l~~~lp~L~~L~  566 (567)
T 1dce_A          555 LAEMLPSVSSIL  566 (567)
T ss_dssp             HHHHCTTCSEEE
T ss_pred             HHHHCcccCccC
Confidence               478888775

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.46  E-value=9.5e-14  Score=117.73  Aligned_cols=168  Identities=15%  Similarity=0.165  Sum_probs=89.1

Q ss_pred             CCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhc
Q 035891            6 NLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLL   85 (309)
Q Consensus         6 ~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~   85 (309)
                      ++..+++.++ .++.++.  +..+++|++|++++|.+.             .+ .++..+++|+.|+++.+....++.+.
T Consensus        20 ~l~~l~l~~~-~i~~~~~--~~~l~~L~~L~l~~n~i~-------------~l-~~l~~l~~L~~L~L~~N~i~~~~~l~   82 (263)
T 1xeu_A           20 NAVKQNLGKQ-SVTDLVS--QKELSGVQNFNGDNSNIQ-------------SL-AGMQFFTNLKELHLSHNQISDLSPLK   82 (263)
T ss_dssp             HHHHHHHTCS-CTTSEEC--HHHHTTCSEEECTTSCCC-------------CC-TTGGGCTTCCEEECCSSCCCCCGGGT
T ss_pred             HHHHHHhcCC-Ccccccc--hhhcCcCcEEECcCCCcc-------------cc-hHHhhCCCCCEEECCCCccCCChhhc
Confidence            3444555555 5555552  556666666666666553             11 14555666666666554444433311


Q ss_pred             CCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCc
Q 035891           86 TSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGS  165 (309)
Q Consensus        86 ~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c  165 (309)
                      .       +++|+.|+++++ .++.++  .+.. ++|+.|+++++ .+..++  ...          .+++|+.|++++|
T Consensus        83 ~-------l~~L~~L~L~~N-~l~~l~--~~~~-~~L~~L~L~~N-~l~~~~--~l~----------~l~~L~~L~Ls~N  138 (263)
T 1xeu_A           83 D-------LTKLEELSVNRN-RLKNLN--GIPS-ACLSRLFLDNN-ELRDTD--SLI----------HLKNLEILSIRNN  138 (263)
T ss_dssp             T-------CSSCCEEECCSS-CCSCCT--TCCC-SSCCEEECCSS-CCSBSG--GGT----------TCTTCCEEECTTS
T ss_pred             c-------CCCCCEEECCCC-ccCCcC--cccc-CcccEEEccCC-ccCCCh--hhc----------CcccccEEECCCC
Confidence            1       235666666663 334332  1222 56666666663 454442  121          5666666666666


Q ss_pred             eecccCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeecccccccccc
Q 035891          166 KLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSI  230 (309)
Q Consensus       166 ~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l  230 (309)
                      +++.++.+..+++|++|++++| .+.++              ..+..+++|+.|+++++ .+...
T Consensus       139 ~i~~~~~l~~l~~L~~L~L~~N-~i~~~--------------~~l~~l~~L~~L~l~~N-~~~~~  187 (263)
T 1xeu_A          139 KLKSIVMLGFLSKLEVLDLHGN-EITNT--------------GGLTRLKKVNWIDLTGQ-KCVNE  187 (263)
T ss_dssp             CCCBCGGGGGCTTCCEEECTTS-CCCBC--------------TTSTTCCCCCEEEEEEE-EEECC
T ss_pred             cCCCChHHccCCCCCEEECCCC-cCcch--------------HHhccCCCCCEEeCCCC-cccCC
Confidence            5555555666666666666665 23333              13455666666666664 34433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.46  E-value=1.4e-13  Score=126.91  Aligned_cols=206  Identities=14%  Similarity=0.126  Sum_probs=126.6

Q ss_pred             CCCchhhhcCCC----CCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhcCCcCccccC
Q 035891           19 YKIPGQVISNLK----MLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLLTSPSLQSIF   94 (309)
Q Consensus        19 ~~lp~~~i~~L~----~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~~~~~l~~~l   94 (309)
                      ..+|.. +..+.    +|++|++++|.+.            ...+..+..+++|+.|+++.+.......+   ..    +
T Consensus        20 ~~l~~~-l~~l~~~~~~L~~L~Ls~n~l~------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l---~~----l   79 (487)
T 3oja_A           20 SSLKQA-LASLRQSAWNVKELDLSGNPLS------------QISAADLAPFTKLELLNLSSNVLYETLDL---ES----L   79 (487)
T ss_dssp             TTHHHH-HHTTSTTGGGCCEEECCSSCCC------------CCCGGGGTTCTTCCEEECTTSCCEEEEEC---TT----C
T ss_pred             hhhHHH-HHHhcccCCCccEEEeeCCcCC------------CCCHHHHhCCCCCCEEEeeCCCCCCCccc---cc----C
Confidence            456765 55554    8999999999996            44557789999999999986665543332   22    4


Q ss_pred             CCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcc----------cccCC-CcccccCcceEEEe
Q 035891           95 SNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEE----------VKRIR-ETHGFFSLHKVSIW  163 (309)
Q Consensus        95 ~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~----------~~~~~-~~~~~~~L~~L~l~  163 (309)
                      ++|+.|+++++ .+..++     ..++|+.|+++++ .+..++......+          .+..+ ....+++|+.|+++
T Consensus        80 ~~L~~L~Ls~N-~l~~l~-----~~~~L~~L~L~~N-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls  152 (487)
T 3oja_A           80 STLRTLDLNNN-YVQELL-----VGPSIETLHAANN-NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK  152 (487)
T ss_dssp             TTCCEEECCSS-EEEEEE-----ECTTCCEEECCSS-CCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECT
T ss_pred             CCCCEEEecCC-cCCCCC-----CCCCcCEEECcCC-cCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECC
Confidence            47888888875 333332     2366777777763 4444443211100          00000 00135566666666


Q ss_pred             CceecccC--cc-CCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCccCCCCc
Q 035891          164 GSKLRHVT--WL-ILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALPFPHL  240 (309)
Q Consensus       164 ~c~l~~l~--~l-~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L  240 (309)
                      +|.+..++  .+ ..+++|++|++++|. +..++              ....+++|++|+++++ .++.++.....+++|
T Consensus       153 ~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~--------------~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L  216 (487)
T 3oja_A          153 LNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVK--------------GQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGV  216 (487)
T ss_dssp             TSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEE--------------CCCCCTTCCEEECCSS-CCCEECGGGGGGTTC
T ss_pred             CCCCCCcChHHHhhhCCcccEEecCCCc-ccccc--------------ccccCCCCCEEECCCC-CCCCCCHhHcCCCCc
Confidence            66333321  12 245666666665553 33332              3445889999999985 788887777788999


Q ss_pred             cEEeecCcccCCCCCCCCCCCCCcceEEE
Q 035891          241 KELEVNLCPKLEKLPFDCTSGQERKLIIK  269 (309)
Q Consensus       241 ~~L~i~~C~~L~~lp~~~~~~~~~l~~~~  269 (309)
                      +.|++++| .+..+|...... ..++.+.
T Consensus       217 ~~L~Ls~N-~l~~lp~~l~~l-~~L~~L~  243 (487)
T 3oja_A          217 TWISLRNN-KLVLIEKALRFS-QNLEHFD  243 (487)
T ss_dssp             SEEECTTS-CCCEECTTCCCC-TTCCEEE
T ss_pred             cEEEecCC-cCcccchhhccC-CCCCEEE
Confidence            99999996 677788765544 4444443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.44  E-value=1.9e-13  Score=128.92  Aligned_cols=151  Identities=21%  Similarity=0.322  Sum_probs=122.6

Q ss_pred             CCCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchh
Q 035891            1 LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAA   80 (309)
Q Consensus         1 l~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~   80 (309)
                      |+.+.+|++|+|++| .+..+|.  +..+++|++|++++|.+.             . +..+..+++|+.|+++.+....
T Consensus        61 l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~l~-------------~-l~~l~~l~~L~~L~Ls~N~l~~  123 (605)
T 1m9s_A           61 IQYLPNVTKLFLNGN-KLTDIKP--LTNLKNLGWLFLDENKIK-------------D-LSSLKDLKKLKSLSLEHNGISD  123 (605)
T ss_dssp             GGGCTTCCEEECTTS-CCCCCGG--GGGCTTCCEEECCSSCCC-------------C-CTTSTTCTTCCEEECTTSCCCC
T ss_pred             HccCCCCCEEEeeCC-CCCCChh--hccCCCCCEEECcCCCCC-------------C-ChhhccCCCCCEEEecCCCCCC
Confidence            356899999999999 9999987  899999999999999985             2 2468899999999998776665


Q ss_pred             hhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceE
Q 035891           81 LHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKV  160 (309)
Q Consensus        81 l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L  160 (309)
                      ++.+..       +++|+.|++++|. +..+  ..+..+++|+.|++++| .+..++.  ..          .+++|+.|
T Consensus       124 l~~l~~-------l~~L~~L~Ls~N~-l~~l--~~l~~l~~L~~L~Ls~N-~l~~~~~--l~----------~l~~L~~L  180 (605)
T 1m9s_A          124 INGLVH-------LPQLESLYLGNNK-ITDI--TVLSRLTKLDTLSLEDN-QISDIVP--LA----------GLTKLQNL  180 (605)
T ss_dssp             CGGGGG-------CTTCSEEECCSSC-CCCC--GGGGSCTTCSEEECCSS-CCCCCGG--GT----------TCTTCCEE
T ss_pred             CccccC-------CCccCEEECCCCc-cCCc--hhhcccCCCCEEECcCC-cCCCchh--hc----------cCCCCCEE
Confidence            544333       4579999999964 4555  46788999999999985 6666544  22          78999999


Q ss_pred             EEeCceecccCccCCCCCccEEEEEcCcccc
Q 035891          161 SIWGSKLRHVTWLILAPNLKHIEVYNCRYLD  191 (309)
Q Consensus       161 ~l~~c~l~~l~~l~~l~~L~~L~l~~c~~l~  191 (309)
                      ++++|.+..++.+..+++|+.|+|++|....
T Consensus       181 ~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          181 YLSKNHISDLRALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             ECCSSCCCBCGGGTTCTTCSEEECCSEEEEC
T ss_pred             ECcCCCCCCChHHccCCCCCEEEccCCcCcC
Confidence            9999988888888899999999999886443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.44  E-value=3.6e-13  Score=109.93  Aligned_cols=147  Identities=14%  Similarity=0.097  Sum_probs=79.6

Q ss_pred             cEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhcCC
Q 035891            8 KCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLLTS   87 (309)
Q Consensus         8 r~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~~~   87 (309)
                      +.++.+++ .+..+|.+ +  .++|++|++++|.+.            ......++.+++|+.|++..+....++... .
T Consensus        10 ~~v~c~~~-~l~~~p~~-~--~~~l~~L~l~~n~l~------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~   72 (208)
T 2o6s_A           10 TTVECYSQ-GRTSVPTG-I--PAQTTYLDLETNSLK------------SLPNGVFDELTSLTQLYLGGNKLQSLPNGV-F   72 (208)
T ss_dssp             TEEECCSS-CCSSCCSC-C--CTTCSEEECCSSCCC------------CCCTTTTTTCTTCSEEECCSSCCCCCCTTT-T
T ss_pred             CEEEecCC-CccCCCCC-C--CCCCcEEEcCCCccC------------cCChhhhcccccCcEEECCCCccCccChhh-c
Confidence            56777777 77788865 3  467888888888875            222233566677777766544333221100 0


Q ss_pred             cCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCcee
Q 035891           88 PSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKL  167 (309)
Q Consensus        88 ~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l  167 (309)
                      ..    +++|+.|+++++ .+..++...+..+++|+.|++++ +.+..++.....          .+++|+.|++++|.+
T Consensus        73 ~~----l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~----------~l~~L~~L~l~~N~l  136 (208)
T 2o6s_A           73 NK----LTSLTYLNLSTN-QLQSLPNGVFDKLTQLKELALNT-NQLQSLPDGVFD----------KLTQLKDLRLYQNQL  136 (208)
T ss_dssp             TT----CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTT----------TCTTCCEEECCSSCC
T ss_pred             CC----CCCcCEEECCCC-cCCccCHhHhcCccCCCEEEcCC-CcCcccCHhHhc----------cCCcCCEEECCCCcc
Confidence            01    234666666653 33444323345556666666665 345544443332          455666666666644


Q ss_pred             cccCc--cCCCCCccEEEEEcC
Q 035891          168 RHVTW--LILAPNLKHIEVYNC  187 (309)
Q Consensus       168 ~~l~~--l~~l~~L~~L~l~~c  187 (309)
                      ..++.  +..+++|++|+++++
T Consensus       137 ~~~~~~~~~~l~~L~~L~l~~N  158 (208)
T 2o6s_A          137 KSVPDGVFDRLTSLQYIWLHDN  158 (208)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSC
T ss_pred             ceeCHHHhccCCCccEEEecCC
Confidence            44442  344556666666554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.44  E-value=2.9e-13  Score=109.58  Aligned_cols=149  Identities=19%  Similarity=0.220  Sum_probs=98.2

Q ss_pred             hccCCCceEEEEEecchhhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccC
Q 035891           63 LGLERLNVLTITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAG  142 (309)
Q Consensus        63 ~~L~~L~~L~l~~~~~~~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~  142 (309)
                      +.+++|+.|+++.+....++.+..       +++|+.|++++| ....+  ..+..+++|+.|+++++ .+.........
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~~l~~-------l~~L~~L~l~~n-~~~~~--~~l~~l~~L~~L~l~~n-~l~~~~~~~l~  109 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLTGIEY-------AHNIKDLTINNI-HATNY--NPISGLSNLERLRIMGK-DVTSDKIPNLS  109 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCTTGGG-------CTTCSEEEEESC-CCSCC--GGGTTCTTCCEEEEECT-TCBGGGSCCCT
T ss_pred             hhcCCccEEeccCCCccChHHHhc-------CCCCCEEEccCC-CCCcc--hhhhcCCCCCEEEeECC-ccCcccChhhc
Confidence            456667777776555444442222       336777888776 44444  35667788888888873 55542223332


Q ss_pred             cccccCCCcccccCcceEEEeCceecc--cCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceee
Q 035891          143 EEVKRIRETHGFFSLHKVSIWGSKLRH--VTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLS  220 (309)
Q Consensus       143 ~~~~~~~~~~~~~~L~~L~l~~c~l~~--l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  220 (309)
                                .+++|+.|++++|++..  ...+..+++|++|++++|..++++.              .+..+++|++|+
T Consensus       110 ----------~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--------------~l~~l~~L~~L~  165 (197)
T 4ezg_A          110 ----------GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--------------PLKTLPELKSLN  165 (197)
T ss_dssp             ----------TCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--------------GGGGCSSCCEEE
T ss_pred             ----------CCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--------------hhcCCCCCCEEE
Confidence                      67888888888885554  3356778888888888876566653              466788888888


Q ss_pred             ccccccccccCCCccCCCCccEEeecCc
Q 035891          221 LYALGNLRSIYPKALPFPHLKELEVNLC  248 (309)
Q Consensus       221 L~~~~~L~~l~~~~~~~~~L~~L~i~~C  248 (309)
                      +++| .++.++ ....+++|+.|++++.
T Consensus       166 l~~n-~i~~~~-~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          166 IQFD-GVHDYR-GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             CTTB-CCCCCT-TGGGCSSCCEEEECBC
T ss_pred             CCCC-CCcChH-HhccCCCCCEEEeeCc
Confidence            8886 566665 4557788888888775

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.42  E-value=4e-13  Score=109.61  Aligned_cols=156  Identities=15%  Similarity=0.155  Sum_probs=118.7

Q ss_pred             CCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhh
Q 035891            4 LVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHR   83 (309)
Q Consensus         4 L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~   83 (309)
                      ..+|++|++++| .++.+|.++++.+++|++|++++|.+.            ......+..+++|++|+++.+....++.
T Consensus        27 ~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~   93 (208)
T 2o6s_A           27 PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQ------------SLPNGVFNKLTSLTYLNLSTNQLQSLPN   93 (208)
T ss_dssp             CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCC------------CCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccC------------ccChhhcCCCCCcCEEECCCCcCCccCH
Confidence            457999999999 899998876899999999999999986            2233446889999999998776554432


Q ss_pred             hcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEe
Q 035891           84 LLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIW  163 (309)
Q Consensus        84 ~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~  163 (309)
                      .. ...    +++|+.|+++++ .+..++...+..+++|+.|++++ +.+..++.....          .+++|+.|+++
T Consensus        94 ~~-~~~----l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~----------~l~~L~~L~l~  156 (208)
T 2o6s_A           94 GV-FDK----LTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQ-NQLKSVPDGVFD----------RLTSLQYIWLH  156 (208)
T ss_dssp             TT-TTT----CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTT----------TCTTCCEEECC
T ss_pred             hH-hcC----ccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCC-CccceeCHHHhc----------cCCCccEEEec
Confidence            11 112    457999999985 56666645678899999999998 577777765554          68999999999


Q ss_pred             CceecccCccCCCCCccEEEEEcCccccccc
Q 035891          164 GSKLRHVTWLILAPNLKHIEVYNCRYLDEII  194 (309)
Q Consensus       164 ~c~l~~l~~l~~l~~L~~L~l~~c~~l~~~~  194 (309)
                      +|.+     ...+++|+.|++..+.....++
T Consensus       157 ~N~~-----~~~~~~l~~L~~~~n~~~g~ip  182 (208)
T 2o6s_A          157 DNPW-----DCTCPGIRYLSEWINKHSGVVR  182 (208)
T ss_dssp             SCCB-----CCCTTTTHHHHHHHHHCTTTBB
T ss_pred             CCCe-----ecCCCCHHHHHHHHHhCCceee
Confidence            9832     3456888998887765554554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.42  E-value=7.6e-13  Score=125.35  Aligned_cols=222  Identities=16%  Similarity=0.139  Sum_probs=144.2

Q ss_pred             CCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhh
Q 035891            3 YLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALH   82 (309)
Q Consensus         3 ~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~   82 (309)
                      .+..|+.+++.++ .....+.  ...+++|++|++++|.+...          .........+.+|+.+++..+......
T Consensus       347 ~l~~L~~l~l~~n-~~~~~~~--~~~l~~L~~L~ls~n~l~~~----------~~~~~~~~~~~~L~~L~~~~~~~~~~~  413 (635)
T 4g8a_A          347 KLKSLKRLTFTSN-KGGNAFS--EVDLPSLEFLDLSRNGLSFK----------GCCSQSDFGTISLKYLDLSFNGVITMS  413 (635)
T ss_dssp             BCTTCCEEEEESC-CSCCBCC--CCBCTTCCEEECCSSCCBEE----------EECCHHHHSCSCCCEEECCSCSEEEEC
T ss_pred             cchhhhhcccccc-cCCCCcc--cccccccccchhhccccccc----------cccccchhhhhhhhhhhcccccccccc
Confidence            4677888888888 6666554  46899999999998887421          234455667788888877544433322


Q ss_pred             hhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEE
Q 035891           83 RLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSI  162 (309)
Q Consensus        83 ~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l  162 (309)
                      ..  ...    +++|+.+++..++.....+...+..+++++.++++. +.+..+......          .+++|+.|++
T Consensus       414 ~~--~~~----l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~-n~l~~~~~~~~~----------~~~~L~~L~L  476 (635)
T 4g8a_A          414 SN--FLG----LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH-THTRVAFNGIFN----------GLSSLEVLKM  476 (635)
T ss_dssp             SC--CTT----CTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTT-SCCEECCTTTTT----------TCTTCCEEEC
T ss_pred             cc--ccc----cccccchhhhhccccccccccccccccccccccccc-cccccccccccc----------cchhhhhhhh
Confidence            11  111    336888887765544444434566777888888877 455555544443          6788888888


Q ss_pred             eCc-eeccc-C-ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCcc-CCC
Q 035891          163 WGS-KLRHV-T-WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKAL-PFP  238 (309)
Q Consensus       163 ~~c-~l~~l-~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~-~~~  238 (309)
                      ++| ....+ | .+..+++|++|++++| .++.+++            ..+..+++|++|+|+++ +++.++...+ .++
T Consensus       477 s~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~------------~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~  542 (635)
T 4g8a_A          477 AGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSP------------TAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLN  542 (635)
T ss_dssp             TTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECT------------TTTTTCTTCCEEECTTS-CCCBCCCGGGTTCT
T ss_pred             hhcccccccCchhhhhccccCEEECCCC-ccCCcCh------------HHHcCCCCCCEEECCCC-cCCCCChhHHhCCC
Confidence            888 33332 2 4567788888888877 4555543            45677888888888885 6777766544 678


Q ss_pred             CccEEeecCcccCCCC-CCCCCCCCCcceEEE
Q 035891          239 HLKELEVNLCPKLEKL-PFDCTSGQERKLIIK  269 (309)
Q Consensus       239 ~L~~L~i~~C~~L~~l-p~~~~~~~~~l~~~~  269 (309)
                      +|+.|+++++ +++.+ |..+.....+++.+.
T Consensus       543 ~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~  573 (635)
T 4g8a_A          543 SLQVLDYSLN-HIMTSKKQELQHFPSSLAFLN  573 (635)
T ss_dssp             TCCEEECTTS-CCCBCCSSCTTCCCTTCCEEE
T ss_pred             CCCEEECCCC-cCCCCCHHHHHhhhCcCCEEE
Confidence            8888888886 55555 333444434555554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.39  E-value=1.2e-13  Score=117.06  Aligned_cols=145  Identities=19%  Similarity=0.256  Sum_probs=111.6

Q ss_pred             CCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhh
Q 035891            3 YLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALH   82 (309)
Q Consensus         3 ~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~   82 (309)
                      ++.+|++|++++| .++.+| + +..+++|++|++++|.+.             ..+. +..+++|+.|+++.+....++
T Consensus        39 ~l~~L~~L~l~~n-~i~~l~-~-l~~l~~L~~L~L~~N~i~-------------~~~~-l~~l~~L~~L~L~~N~l~~l~  101 (263)
T 1xeu_A           39 ELSGVQNFNGDNS-NIQSLA-G-MQFFTNLKELHLSHNQIS-------------DLSP-LKDLTKLEELSVNRNRLKNLN  101 (263)
T ss_dssp             HHTTCSEEECTTS-CCCCCT-T-GGGCTTCCEEECCSSCCC-------------CCGG-GTTCSSCCEEECCSSCCSCCT
T ss_pred             hcCcCcEEECcCC-Ccccch-H-HhhCCCCCEEECCCCccC-------------CChh-hccCCCCCEEECCCCccCCcC
Confidence            4678999999998 888888 3 888999999999998885             2223 788899999999877666555


Q ss_pred             hhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEE
Q 035891           83 RLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSI  162 (309)
Q Consensus        83 ~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l  162 (309)
                      ....        ++|+.|+++++ .++.+  +.+..+++|+.|++++ +.++.++  ...          .+++|+.|++
T Consensus       102 ~~~~--------~~L~~L~L~~N-~l~~~--~~l~~l~~L~~L~Ls~-N~i~~~~--~l~----------~l~~L~~L~L  157 (263)
T 1xeu_A          102 GIPS--------ACLSRLFLDNN-ELRDT--DSLIHLKNLEILSIRN-NKLKSIV--MLG----------FLSKLEVLDL  157 (263)
T ss_dssp             TCCC--------SSCCEEECCSS-CCSBS--GGGTTCTTCCEEECTT-SCCCBCG--GGG----------GCTTCCEEEC
T ss_pred             cccc--------CcccEEEccCC-ccCCC--hhhcCcccccEEECCC-CcCCCCh--HHc----------cCCCCCEEEC
Confidence            4333        16999999985 45555  3577888999999988 5677664  222          6889999999


Q ss_pred             eCceecccCccCCCCCccEEEEEcCc
Q 035891          163 WGSKLRHVTWLILAPNLKHIEVYNCR  188 (309)
Q Consensus       163 ~~c~l~~l~~l~~l~~L~~L~l~~c~  188 (309)
                      ++|.+..++.+..+++|+.|+++++.
T Consensus       158 ~~N~i~~~~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          158 HGNEITNTGGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             TTSCCCBCTTSTTCCCCCEEEEEEEE
T ss_pred             CCCcCcchHHhccCCCCCEEeCCCCc
Confidence            99877666677888999999998875

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.39  E-value=2.4e-12  Score=121.91  Aligned_cols=203  Identities=16%  Similarity=0.106  Sum_probs=147.5

Q ss_pred             CCCCCCcEEecCCCcCCCC---CchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecc
Q 035891            2 KYLVNLKCLNLEYTYRIYK---IPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSF   78 (309)
Q Consensus         2 ~~L~~Lr~L~l~~~~~l~~---lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~   78 (309)
                      ..+.+|++|++++| .+..   .+.. +..+.+|++|++..+...             .....+..+++|+.+++..+..
T Consensus       368 ~~l~~L~~L~ls~n-~l~~~~~~~~~-~~~~~~L~~L~~~~~~~~-------------~~~~~~~~l~~L~~l~l~~~~~  432 (635)
T 4g8a_A          368 VDLPSLEFLDLSRN-GLSFKGCCSQS-DFGTISLKYLDLSFNGVI-------------TMSSNFLGLEQLEHLDFQHSNL  432 (635)
T ss_dssp             CBCTTCCEEECCSS-CCBEEEECCHH-HHSCSCCCEEECCSCSEE-------------EECSCCTTCTTCCEEECTTSEE
T ss_pred             ccccccccchhhcc-ccccccccccc-hhhhhhhhhhhccccccc-------------cccccccccccccchhhhhccc
Confidence            35788999999998 6653   4555 778899999999888773             4455667788999988754443


Q ss_pred             hhhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcc
Q 035891           79 AALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLH  158 (309)
Q Consensus        79 ~~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~  158 (309)
                      ...........    +++++.++++.+. +.......+..+++|+.|+++++.....+....+.          .+++|+
T Consensus       433 ~~~~~~~~~~~----l~~l~~l~ls~n~-l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~----------~l~~L~  497 (635)
T 4g8a_A          433 KQMSEFSVFLS----LRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT----------ELRNLT  497 (635)
T ss_dssp             ESTTSSCTTTT----CTTCCEEECTTSC-CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT----------TCTTCC
T ss_pred             ccccccccccc----ccccccccccccc-cccccccccccchhhhhhhhhhcccccccCchhhh----------hccccC
Confidence            33332222222    4468888888743 44444346677889999999986656655555554          789999


Q ss_pred             eEEEeCceecccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCcc-
Q 035891          159 KVSIWGSKLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKAL-  235 (309)
Q Consensus       159 ~L~l~~c~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~-  235 (309)
                      .|++++|+++.++  .+..+++|++|+|++| .++.+++            ..+..+++|++|+++++ +++.++.... 
T Consensus       498 ~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~------------~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~  563 (635)
T 4g8a_A          498 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDT------------FPYKCLNSLQVLDYSLN-HIMTSKKQELQ  563 (635)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCBCCC------------GGGTTCTTCCEEECTTS-CCCBCCSSCTT
T ss_pred             EEECCCCccCCcChHHHcCCCCCCEEECCCC-cCCCCCh------------hHHhCCCCCCEEECCCC-cCCCCCHHHHH
Confidence            9999999777764  4678899999999887 4665543            45678899999999995 7877766544 


Q ss_pred             CC-CCccEEeecCc
Q 035891          236 PF-PHLKELEVNLC  248 (309)
Q Consensus       236 ~~-~~L~~L~i~~C  248 (309)
                      .+ ++|+.|+++++
T Consensus       564 ~l~~~L~~L~L~~N  577 (635)
T 4g8a_A          564 HFPSSLAFLNLTQN  577 (635)
T ss_dssp             CCCTTCCEEECTTC
T ss_pred             hhhCcCCEEEeeCC
Confidence            55 68999999875

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.34  E-value=3e-14  Score=127.45  Aligned_cols=214  Identities=18%  Similarity=0.159  Sum_probs=137.4

Q ss_pred             CCCCCcEEecCCCcCCCCC-----chhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEec
Q 035891            3 YLVNLKCLNLEYTYRIYKI-----PGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQS   77 (309)
Q Consensus         3 ~L~~Lr~L~l~~~~~l~~l-----p~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~   77 (309)
                      .+++|++|++++| .+...     +.. +.++++|++|++++|.+..+...+  ......+...+..+++|+.|+++.+.
T Consensus        30 ~~~~L~~L~L~~n-~i~~~~~~~l~~~-l~~~~~L~~L~Ls~~~~~~l~~~~--~~~~~~l~~~l~~~~~L~~L~Ls~n~  105 (386)
T 2ca6_A           30 EDDSVKEIVLSGN-TIGTEAARWLSEN-IASKKDLEIAEFSDIFTGRVKDEI--PEALRLLLQALLKCPKLHTVRLSDNA  105 (386)
T ss_dssp             HCSCCCEEECTTS-EECHHHHHHHHHT-TTTCTTCCEEECCSCCTTSCGGGS--HHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             cCCCccEEECCCC-CCCHHHHHHHHHH-HHhCCCccEEeCcccccCccccch--hHHHHHHHHHHhhCCcccEEECCCCc
Confidence            4678999999999 77753     332 668999999999988654221100  00001222345788999999998766


Q ss_pred             chh-----hhhhcCCcCccccCCCcCeEEEecCCCCCeecccC----cccc---------ccCCEEEEecCCCCce--EE
Q 035891           78 FAA-----LHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFT----LASL---------RHLEALDMTNCKDLEE--ME  137 (309)
Q Consensus        78 ~~~-----l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~----l~~l---------~~L~~L~l~~~~~l~~--l~  137 (309)
                      ...     ++....  .    +++|+.|++++|.. .......    +..+         ++|+.|+++++ .+..  ++
T Consensus       106 l~~~~~~~l~~~l~--~----~~~L~~L~L~~n~l-~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~l~~~~~~  177 (386)
T 2ca6_A          106 FGPTAQEPLIDFLS--K----HTPLEHLYLHNNGL-GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMK  177 (386)
T ss_dssp             CCTTTHHHHHHHHH--H----CTTCCEEECCSSCC-HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHH
T ss_pred             CCHHHHHHHHHHHH--h----CCCCCEEECcCCCC-CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-CCCcHHHH
Confidence            553     222211  1    34799999998753 3222112    3333         89999999985 4431  21


Q ss_pred             c--CccCcccccCCCcccccCcceEEEeCceecc------cC-ccCCCCCccEEEEEcCccc----cccccccccCCcCc
Q 035891          138 I--DYAGEEVKRIRETHGFFSLHKVSIWGSKLRH------VT-WLILAPNLKHIEVYNCRYL----DEIISLEKLGEVPS  204 (309)
Q Consensus       138 ~--~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~------l~-~l~~l~~L~~L~l~~c~~l----~~~~~~~~~~~~~~  204 (309)
                      .  ....          .+++|++|++++|++..      ++ .+..+++|++|++++|..-    ..++          
T Consensus       178 ~l~~~l~----------~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~----------  237 (386)
T 2ca6_A          178 EWAKTFQ----------SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA----------  237 (386)
T ss_dssp             HHHHHHH----------HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH----------
T ss_pred             HHHHHHH----------hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH----------
Confidence            1  1111          57799999999996552      23 5778899999999988632    2232          


Q ss_pred             ccccCCccCCccceeecccccccccc-----CCCc--cCCCCccEEeecCcccCCC
Q 035891          205 EEMQNLFPFARLESLSLYALGNLRSI-----YPKA--LPFPHLKELEVNLCPKLEK  253 (309)
Q Consensus       205 ~~~~~~~~~~~L~~L~L~~~~~L~~l-----~~~~--~~~~~L~~L~i~~C~~L~~  253 (309)
                         ..+..+++|++|++++| .++..     +...  ..+++|+.|++++| .+..
T Consensus       238 ---~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~  288 (386)
T 2ca6_A          238 ---IALKSWPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIEL  288 (386)
T ss_dssp             ---HHGGGCTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBH
T ss_pred             ---HHHccCCCcCEEECCCC-CCchhhHHHHHHHHhhccCCCeEEEECcCC-cCCH
Confidence               34678899999999997 45443     2222  23899999999987 3443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.34  E-value=3.2e-12  Score=105.96  Aligned_cols=147  Identities=17%  Similarity=0.149  Sum_probs=83.3

Q ss_pred             CcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhcC
Q 035891            7 LKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLLT   86 (309)
Q Consensus         7 Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~~   86 (309)
                      .+.++.+++ .+..+|.+ +.  ++|++|++++|.+.            ...+..+..+++|+.|+++.+....++... 
T Consensus        21 ~~~v~c~~~-~l~~ip~~-~~--~~L~~L~Ls~n~i~------------~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~-   83 (229)
T 3e6j_A           21 GTTVDCRSK-RHASVPAG-IP--TNAQILYLHDNQIT------------KLEPGVFDSLINLKELYLGSNQLGALPVGV-   83 (229)
T ss_dssp             TTEEECTTS-CCSSCCSC-CC--TTCSEEECCSSCCC------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTT-
T ss_pred             CCEeEccCC-CcCccCCC-CC--CCCCEEEcCCCccC------------ccCHHHhhCccCCcEEECCCCCCCCcChhh-
Confidence            457888888 88999986 43  88999999999986            334555677777777777655433222100 


Q ss_pred             CcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCce
Q 035891           87 SPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSK  166 (309)
Q Consensus        87 ~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  166 (309)
                      ...    +++|+.|+++++ .++.++...+..+++|+.|++++ +.+..++..+.           .+++|+.|++++|+
T Consensus        84 ~~~----l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~lp~~~~-----------~l~~L~~L~L~~N~  146 (229)
T 3e6j_A           84 FDS----LTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELFMCC-NKLTELPRGIE-----------RLTHLTHLALDQNQ  146 (229)
T ss_dssp             TTT----CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCSCCTTGG-----------GCTTCSEEECCSSC
T ss_pred             ccc----CCCcCEEECCCC-cCCccChhHhCcchhhCeEeccC-CcccccCcccc-----------cCCCCCEEECCCCc
Confidence            001    234556666553 34444333345555555555555 34444443332           45555555555554


Q ss_pred             ecccC--ccCCCCCccEEEEEcC
Q 035891          167 LRHVT--WLILAPNLKHIEVYNC  187 (309)
Q Consensus       167 l~~l~--~l~~l~~L~~L~l~~c  187 (309)
                      +..++  .+..+++|++|++.++
T Consensus       147 l~~~~~~~~~~l~~L~~L~l~~N  169 (229)
T 3e6j_A          147 LKSIPHGAFDRLSSLTHAYLFGN  169 (229)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CCccCHHHHhCCCCCCEEEeeCC
Confidence            44443  2344555555555544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.34  E-value=4.3e-12  Score=104.55  Aligned_cols=147  Identities=12%  Similarity=0.213  Sum_probs=77.7

Q ss_pred             cEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhcCC
Q 035891            8 KCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLLTS   87 (309)
Q Consensus         8 r~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~~~   87 (309)
                      +.++.+++ .++.+|.. +.  ++|++|++++|.+.            ......+..+++|+.|+++.+....+..-   
T Consensus        14 ~~v~c~~~-~l~~iP~~-l~--~~l~~L~l~~n~i~------------~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~---   74 (220)
T 2v9t_B           14 NIVDCRGK-GLTEIPTN-LP--ETITEIRLEQNTIK------------VIPPGAFSPYKKLRRIDLSNNQISELAPD---   74 (220)
T ss_dssp             TEEECTTS-CCSSCCSS-CC--TTCCEEECCSSCCC------------EECTTSSTTCTTCCEEECCSSCCCEECTT---
T ss_pred             CEEEcCCC-CcCcCCCc-cC--cCCCEEECCCCcCC------------CcCHhHhhCCCCCCEEECCCCcCCCcCHH---
Confidence            56788888 88888876 44  68999999998885            32333566667777776654433322100   


Q ss_pred             cCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCcee
Q 035891           88 PSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKL  167 (309)
Q Consensus        88 ~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l  167 (309)
                       .+.+ +++|+.|+++++ .++.++...+..+++|+.|++++ +.+..++...+.          .+++|+.|++++|++
T Consensus        75 -~~~~-l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~----------~l~~L~~L~L~~N~l  140 (220)
T 2v9t_B           75 -AFQG-LRSLNSLVLYGN-KITELPKSLFEGLFSLQLLLLNA-NKINCLRVDAFQ----------DLHNLNLLSLYDNKL  140 (220)
T ss_dssp             -TTTT-CSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTT----------TCTTCCEEECCSSCC
T ss_pred             -HhhC-CcCCCEEECCCC-cCCccCHhHccCCCCCCEEECCC-CCCCEeCHHHcC----------CCCCCCEEECCCCcC
Confidence             0010 224555555552 33444333344455555555555 344444333332          445555555555544


Q ss_pred             cccC--ccCCCCCccEEEEEcC
Q 035891          168 RHVT--WLILAPNLKHIEVYNC  187 (309)
Q Consensus       168 ~~l~--~l~~l~~L~~L~l~~c  187 (309)
                      +.++  .+..+++|++|+++++
T Consensus       141 ~~~~~~~~~~l~~L~~L~L~~N  162 (220)
T 2v9t_B          141 QTIAKGTFSPLRAIQTMHLAQN  162 (220)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEECHHHHhCCCCCCEEEeCCC
Confidence            4443  1334455555555443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.33  E-value=3.1e-12  Score=113.36  Aligned_cols=170  Identities=16%  Similarity=0.156  Sum_probs=116.9

Q ss_pred             cEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhh-ccCCCceEEEEEecchhhhhhcC
Q 035891            8 KCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELL-GLERLNVLTITLQSFAALHRLLT   86 (309)
Q Consensus         8 r~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~-~L~~L~~L~l~~~~~~~l~~~~~   86 (309)
                      ++++.+++ .++.+|.. +.  ..+++|++++|.+.            ......+. .+++|+.|+++.+....+..- .
T Consensus        21 ~~l~c~~~-~l~~iP~~-~~--~~l~~L~Ls~N~l~------------~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~-~   83 (361)
T 2xot_A           21 NILSCSKQ-QLPNVPQS-LP--SYTALLDLSHNNLS------------RLRAEWTPTRLTNLHSLLLSHNHLNFISSE-A   83 (361)
T ss_dssp             TEEECCSS-CCSSCCSS-CC--TTCSEEECCSSCCC------------EECTTSSSSCCTTCCEEECCSSCCCEECTT-T
T ss_pred             CEEEeCCC-CcCccCcc-CC--CCCCEEECCCCCCC------------ccChhhhhhcccccCEEECCCCcCCccChh-h
Confidence            57888888 88888876 43  45888999988886            22333355 788899998876665544321 0


Q ss_pred             CcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCce
Q 035891           87 SPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSK  166 (309)
Q Consensus        87 ~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  166 (309)
                      +..    +++|+.|+++++ .++.++...+..+++|+.|++++ +.+..+....+.          .+++|+.|++++|+
T Consensus        84 ~~~----l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~----------~l~~L~~L~L~~N~  147 (361)
T 2xot_A           84 FVP----VPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYN-NHIVVVDRNAFE----------DMAQLQKLYLSQNQ  147 (361)
T ss_dssp             TTT----CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTT----------TCTTCCEEECCSSC
T ss_pred             ccC----CCCCCEEECCCC-cCCcCCHHHhCCCcCCCEEECCC-CcccEECHHHhC----------CcccCCEEECCCCc
Confidence            112    447899999884 56777655678888999999988 578877665554          78899999999987


Q ss_pred             ecccCcc-----CCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCc--cceeeccc
Q 035891          167 LRHVTWL-----ILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFAR--LESLSLYA  223 (309)
Q Consensus       167 l~~l~~l-----~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~--L~~L~L~~  223 (309)
                      +..+|..     ..+++|++|+|+++ .++.++.            ..+..++.  |+.|++.+
T Consensus       148 l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~------------~~~~~l~~~~l~~l~l~~  198 (361)
T 2xot_A          148 ISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPL------------TDLQKLPAWVKNGLYLHN  198 (361)
T ss_dssp             CCSCCGGGTC----CTTCCEEECCSS-CCCCCCH------------HHHHHSCHHHHTTEECCS
T ss_pred             CCeeCHHHhcCcccCCcCCEEECCCC-CCCccCH------------HHhhhccHhhcceEEecC
Confidence            7777632     45889999999886 4555432            23344554  36677765

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.32  E-value=1.1e-13  Score=122.68  Aligned_cols=161  Identities=14%  Similarity=0.175  Sum_probs=93.2

Q ss_pred             CCCCcEEecCCCcCCCCCch----hhhcCCC-CCceEEecccCCCCccCCccccCCcccchhhhhcc-----CCCceEEE
Q 035891            4 LVNLKCLNLEYTYRIYKIPG----QVISNLK-MLEALRMFKCGSSKQESDSILFGGSLVLVEELLGL-----ERLNVLTI   73 (309)
Q Consensus         4 L~~Lr~L~l~~~~~l~~lp~----~~i~~L~-~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L-----~~L~~L~l   73 (309)
                      ..+|++|++++| .++..+.    +.+..++ +|++|++++|.+.            ...+..+..+     ++|+.|++
T Consensus        21 ~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~------------~~~~~~l~~~l~~~~~~L~~L~L   87 (362)
T 3goz_A           21 PHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLG------------FKNSDELVQILAAIPANVTSLNL   87 (362)
T ss_dssp             CTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGG------------GSCHHHHHHHHHTSCTTCCEEEC
T ss_pred             CCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCC------------HHHHHHHHHHHhccCCCccEEEC
Confidence            456999999999 8888775    4578888 8999999999886            3334444443     88888888


Q ss_pred             EEecchhhh--hhcC-CcCccccCCCcCeEEEecCCCCCeecccCc----cc-cccCCEEEEecCCCCceEEcCccCccc
Q 035891           74 TLQSFAALH--RLLT-SPSLQSIFSNTPSLCLRNCHSLSSLSVFTL----AS-LRHLEALDMTNCKDLEEMEIDYAGEEV  145 (309)
Q Consensus        74 ~~~~~~~l~--~~~~-~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l----~~-l~~L~~L~l~~~~~l~~l~~~~~~~~~  145 (309)
                      +.+......  .+.. ....   .++|+.|++++|. +...+...+    .. .++|+.|+++++ .+.........   
T Consensus        88 s~n~l~~~~~~~l~~~l~~~---~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~---  159 (362)
T 3goz_A           88 SGNFLSYKSSDELVKTLAAI---PFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELI---  159 (362)
T ss_dssp             CSSCGGGSCHHHHHHHHHTS---CTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHH---
T ss_pred             cCCcCChHHHHHHHHHHHhC---CCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHH---
Confidence            766654321  1111 0111   0268888888854 344332222    22 247888888874 44432211110   


Q ss_pred             ccCCCcccc-cCcceEEEeCceecccC------ccCCC-CCccEEEEEcCc
Q 035891          146 KRIRETHGF-FSLHKVSIWGSKLRHVT------WLILA-PNLKHIEVYNCR  188 (309)
Q Consensus       146 ~~~~~~~~~-~~L~~L~l~~c~l~~l~------~l~~l-~~L~~L~l~~c~  188 (309)
                      ..+.   .+ ++|++|++++|++....      .+... ++|++|++++|.
T Consensus       160 ~~l~---~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  207 (362)
T 3goz_A          160 QILA---AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL  207 (362)
T ss_dssp             HHHH---TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred             HHHh---cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC
Confidence            0000   12 37777777777554433      12233 377777776664

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.32  E-value=1.7e-12  Score=115.10  Aligned_cols=157  Identities=13%  Similarity=0.195  Sum_probs=119.2

Q ss_pred             CCCcEEecCCCcCCCCCchhhhc-CCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhh
Q 035891            5 VNLKCLNLEYTYRIYKIPGQVIS-NLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHR   83 (309)
Q Consensus         5 ~~Lr~L~l~~~~~l~~lp~~~i~-~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~   83 (309)
                      ..+++|++++| .++.++.+.+. ++++|++|++++|.+.            ...+..+..+++|+.|+++.+....+..
T Consensus        39 ~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~------------~i~~~~~~~l~~L~~L~Ls~N~l~~~~~  105 (361)
T 2xot_A           39 SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLN------------FISSEAFVPVPNLRYLDLSSNHLHTLDE  105 (361)
T ss_dssp             TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCC------------EECTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCC------------ccChhhccCCCCCCEEECCCCcCCcCCH
Confidence            45899999999 99999887566 9999999999999996            3344568899999999998776654432


Q ss_pred             hcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEe
Q 035891           84 LLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIW  163 (309)
Q Consensus        84 ~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~  163 (309)
                      .. ...    +++|+.|+++++ .+..++...+..+++|+.|++++ +.+..++...+..       ...+++|+.|+++
T Consensus       106 ~~-~~~----l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~-------~~~l~~L~~L~L~  171 (361)
T 2xot_A          106 FL-FSD----LQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKD-------GNKLPKLMLLDLS  171 (361)
T ss_dssp             TT-TTT----CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC-----------CTTCCEEECC
T ss_pred             HH-hCC----CcCCCEEECCCC-cccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcC-------cccCCcCCEEECC
Confidence            11 112    457999999995 56666546788999999999998 6788877655310       0058999999999


Q ss_pred             CceecccC--ccCCCCC--ccEEEEEcCc
Q 035891          164 GSKLRHVT--WLILAPN--LKHIEVYNCR  188 (309)
Q Consensus       164 ~c~l~~l~--~l~~l~~--L~~L~l~~c~  188 (309)
                      +|++..++  .+..++.  ++.|++.+++
T Consensus       172 ~N~l~~l~~~~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          172 SNKLKKLPLTDLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             SSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred             CCCCCccCHHHhhhccHhhcceEEecCCC
Confidence            99888877  3456666  4889998764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.30  E-value=5e-12  Score=104.12  Aligned_cols=133  Identities=18%  Similarity=0.217  Sum_probs=107.7

Q ss_pred             CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhh
Q 035891            5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRL   84 (309)
Q Consensus         5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~   84 (309)
                      .+|++|++++| .++.+|.+.+..+++|++|++++|.+.            ...+..+..+++|+.|+++.+....++..
T Consensus        32 ~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~------------~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~   98 (220)
T 2v9t_B           32 ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQIS------------ELAPDAFQGLRSLNSLVLYGNKITELPKS   98 (220)
T ss_dssp             TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCC------------EECTTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred             cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCC------------CcCHHHhhCCcCCCEEECCCCcCCccCHh
Confidence            47999999999 999998766899999999999999996            45567889999999999987776654432


Q ss_pred             cCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeC
Q 035891           85 LTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWG  164 (309)
Q Consensus        85 ~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  164 (309)
                      . ...    +++|+.|+++++ .+..++...+..+++|+.|++++ +.++.++...+.          .+++|+.|++++
T Consensus        99 ~-f~~----l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~----------~l~~L~~L~L~~  161 (220)
T 2v9t_B           99 L-FEG----LFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFS----------PLRAIQTMHLAQ  161 (220)
T ss_dssp             T-TTT----CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTT----------TCTTCCEEECCS
T ss_pred             H-ccC----CCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCC-CcCCEECHHHHh----------CCCCCCEEEeCC
Confidence            1 111    457999999995 56666546788899999999999 678888776554          789999999999


Q ss_pred             cee
Q 035891          165 SKL  167 (309)
Q Consensus       165 c~l  167 (309)
                      |.+
T Consensus       162 N~~  164 (220)
T 2v9t_B          162 NPF  164 (220)
T ss_dssp             SCE
T ss_pred             CCc
Confidence            844

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.29  E-value=1e-13  Score=123.00  Aligned_cols=218  Identities=13%  Similarity=0.061  Sum_probs=134.9

Q ss_pred             CCC-CCcEEecCCCcCCCCCchhhhcCC-----CCCceEEecccCCCCccCCccccCCcccchhhhhcc-CCCceEEEEE
Q 035891            3 YLV-NLKCLNLEYTYRIYKIPGQVISNL-----KMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGL-ERLNVLTITL   75 (309)
Q Consensus         3 ~L~-~Lr~L~l~~~~~l~~lp~~~i~~L-----~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L-~~L~~L~l~~   75 (309)
                      ++. +|++|++++| .++......+..+     ++|++|++++|.+...        ....+...+..+ ++|+.|+++.
T Consensus        48 ~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~--------~~~~l~~~l~~~~~~L~~L~Ls~  118 (362)
T 3goz_A           48 NTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYK--------SSDELVKTLAAIPFTITVLDLGW  118 (362)
T ss_dssp             TCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS--------CHHHHHHHHHTSCTTCCEEECCS
T ss_pred             hCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCcCChH--------HHHHHHHHHHhCCCCccEEECcC
Confidence            456 8999999999 8887644446664     9999999999998611        001122235555 8999999987


Q ss_pred             ecchhhhh--hcC-CcCccccCCCcCeEEEecCCCCCeeccc----Cccccc-cCCEEEEecCCCCceEEcCccCccccc
Q 035891           76 QSFAALHR--LLT-SPSLQSIFSNTPSLCLRNCHSLSSLSVF----TLASLR-HLEALDMTNCKDLEEMEIDYAGEEVKR  147 (309)
Q Consensus        76 ~~~~~l~~--~~~-~~~l~~~l~~L~~L~l~~~~~l~~~~~~----~l~~l~-~L~~L~l~~~~~l~~l~~~~~~~~~~~  147 (309)
                      +.......  +.. ...+   .++|+.|++++|. +......    .+..++ +|+.|++++| .+...+......   .
T Consensus       119 N~l~~~~~~~l~~~l~~~---~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~---~  190 (362)
T 3goz_A          119 NDFSSKSSSEFKQAFSNL---PASITSLNLRGND-LGIKSSDELIQILAAIPANVNSLNLRGN-NLASKNCAELAK---F  190 (362)
T ss_dssp             SCGGGSCHHHHHHHHTTS---CTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHH---H
T ss_pred             CcCCcHHHHHHHHHHHhC---CCceeEEEccCCc-CCHHHHHHHHHHHhcCCccccEeeecCC-CCchhhHHHHHH---H
Confidence            76553321  111 0111   1279999999864 3322211    233444 8999999985 555444321110   0


Q ss_pred             CCCcccc-cCcceEEEeCceecc-----cC-ccCC-CCCccEEEEEcCccccccccccccCCcCcccccCCccCCcccee
Q 035891          148 IRETHGF-FSLHKVSIWGSKLRH-----VT-WLIL-APNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESL  219 (309)
Q Consensus       148 ~~~~~~~-~~L~~L~l~~c~l~~-----l~-~l~~-l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  219 (309)
                      .   ..+ ++|+.|++++|.+..     ++ .+.. .++|++|++++|. +++.....-      .  .....+++|++|
T Consensus       191 l---~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l------~--~~~~~l~~L~~L  258 (362)
T 3goz_A          191 L---ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENL------K--LLKDSLKHLQTV  258 (362)
T ss_dssp             H---HTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHH------H--HTTTTTTTCSEE
T ss_pred             H---HhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHH------H--HHHhcCCCccEE
Confidence            0   023 599999999996665     22 2233 4699999999874 433311000      0  234678899999


Q ss_pred             eccccc-------cccccCCCccCCCCccEEeecCcc
Q 035891          220 SLYALG-------NLRSIYPKALPFPHLKELEVNLCP  249 (309)
Q Consensus       220 ~L~~~~-------~L~~l~~~~~~~~~L~~L~i~~C~  249 (309)
                      ++++|.       .+..+......+++|+.|++++++
T Consensus       259 ~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          259 YLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             EEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             EeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence            999874       133344444578889999998864

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.28  E-value=5.8e-14  Score=128.34  Aligned_cols=224  Identities=17%  Similarity=0.154  Sum_probs=121.2

Q ss_pred             CCCCcEEecCCCcCCCC-----CchhhhcCCCCCceEEecccCCCCccC------------C---ccccCC--cc----c
Q 035891            4 LVNLKCLNLEYTYRIYK-----IPGQVISNLKMLEALRMFKCGSSKQES------------D---SILFGG--SL----V   57 (309)
Q Consensus         4 L~~Lr~L~l~~~~~l~~-----lp~~~i~~L~~L~~L~l~~~~~~~~~~------------~---~~l~~~--~~----~   57 (309)
                      ..+|++|++++| .++.     ++.. +..+++|++|++++|.+.....            .   .++...  ..    .
T Consensus       141 ~~~L~~L~L~~n-~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  218 (461)
T 1z7x_W          141 QCRLEKLQLEYC-SLSAASCEPLASV-LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD  218 (461)
T ss_dssp             TCCCCEEECTTS-CCBGGGHHHHHHH-HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHH
T ss_pred             CCcceEEECCCC-CCCHHHHHHHHHH-HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHH
Confidence            456888888888 6664     3443 6667788888888777642110            0   001100  01    1


Q ss_pred             chhhhhccCCCceEEEEEecchhh--hhhcCCcCccccCCCcCeEEEecCCCCCeecc----cCccccccCCEEEEecCC
Q 035891           58 LVEELLGLERLNVLTITLQSFAAL--HRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSV----FTLASLRHLEALDMTNCK  131 (309)
Q Consensus        58 ~~~~l~~L~~L~~L~l~~~~~~~l--~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~----~~l~~l~~L~~L~l~~~~  131 (309)
                      ++..+..+++|+.|+++.+.....  ..+..  .+...+++|+.|++++| .++....    ..+..+++|+.|+++++ 
T Consensus       219 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~--~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-  294 (461)
T 1z7x_W          219 LCGIVASKASLRELALGSNKLGDVGMAELCP--GLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGN-  294 (461)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHH--HHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTC-
T ss_pred             HHHHHHhCCCccEEeccCCcCChHHHHHHHH--HHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCC-
Confidence            344566677777777765544321  11111  00001236777887776 3443210    23455677888888774 


Q ss_pred             CCceEEcCccCcccccCCCcccccCcceEEEeCceeccc-----C-ccCCCCCccEEEEEcCccccccccccccCCcCcc
Q 035891          132 DLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHV-----T-WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSE  205 (309)
Q Consensus       132 ~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l-----~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~  205 (309)
                      .+...+......   ...  ...++|++|++++|.+...     + .+..+++|++|++++|. +++.....-      .
T Consensus       295 ~i~~~~~~~l~~---~l~--~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l------~  362 (461)
T 1z7x_W          295 ELGDEGARLLCE---TLL--EPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVREL------C  362 (461)
T ss_dssp             CCHHHHHHHHHH---HHT--STTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHH------H
T ss_pred             CCchHHHHHHHH---Hhc--cCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHH------H
Confidence            443322211100   000  0236888888888854432     1 34566888888888873 433211000      0


Q ss_pred             cccCC-ccCCccceeecccccccc-----ccCCCccCCCCccEEeecCc
Q 035891          206 EMQNL-FPFARLESLSLYALGNLR-----SIYPKALPFPHLKELEVNLC  248 (309)
Q Consensus       206 ~~~~~-~~~~~L~~L~L~~~~~L~-----~l~~~~~~~~~L~~L~i~~C  248 (309)
                        ..+ ...++|++|++++| .++     .++.....+++|++|++++|
T Consensus       363 --~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N  408 (461)
T 1z7x_W          363 --QGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNN  408 (461)
T ss_dssp             --HHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred             --HHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCC
Confidence              011 12678999999987 455     44444446889999999887

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.26  E-value=1.8e-11  Score=100.81  Aligned_cols=148  Identities=14%  Similarity=0.168  Sum_probs=81.4

Q ss_pred             CcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccch-hhhhccCCCceEEEEEecchhhhhhc
Q 035891            7 LKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLV-EELLGLERLNVLTITLQSFAALHRLL   85 (309)
Q Consensus         7 Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~-~~l~~L~~L~~L~l~~~~~~~l~~~~   85 (309)
                      -+.++++++ .++.+|.. +.  ..+++|++++|.+.            ...+ ..+..+++|+.|+++.+....+..- 
T Consensus        13 ~~~l~~s~n-~l~~iP~~-~~--~~~~~L~L~~N~l~------------~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~-   75 (220)
T 2v70_A           13 GTTVDCSNQ-KLNKIPEH-IP--QYTAELRLNNNEFT------------VLEATGIFKKLPQLRKINFSNNKITDIEEG-   75 (220)
T ss_dssp             TTEEECCSS-CCSSCCSC-CC--TTCSEEECCSSCCC------------EECCCCCGGGCTTCCEEECCSSCCCEECTT-
T ss_pred             CCEeEeCCC-CcccCccC-CC--CCCCEEEcCCCcCC------------ccCchhhhccCCCCCEEECCCCcCCEECHH-
Confidence            368899998 89999986 43  45789999999986            2211 2356677777777754443332210 


Q ss_pred             CCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCc
Q 035891           86 TSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGS  165 (309)
Q Consensus        86 ~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c  165 (309)
                      ....    +++|+.|+++++ .+..++...+..+++|+.|++++ +.+..+....+.          .+++|+.|++++|
T Consensus        76 ~~~~----l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~----------~l~~L~~L~L~~N  139 (220)
T 2v70_A           76 AFEG----ASGVNEILLTSN-RLENVQHKMFKGLESLKTLMLRS-NRITCVGNDSFI----------GLSSVRLLSLYDN  139 (220)
T ss_dssp             TTTT----CTTCCEEECCSS-CCCCCCGGGGTTCSSCCEEECTT-SCCCCBCTTSST----------TCTTCSEEECTTS
T ss_pred             HhCC----CCCCCEEECCCC-ccCccCHhHhcCCcCCCEEECCC-CcCCeECHhHcC----------CCccCCEEECCCC
Confidence            0011    234666666553 33444323445555666666655 344444333332          4555556665555


Q ss_pred             eecccC--ccCCCCCccEEEEEcC
Q 035891          166 KLRHVT--WLILAPNLKHIEVYNC  187 (309)
Q Consensus       166 ~l~~l~--~l~~l~~L~~L~l~~c  187 (309)
                      +++.++  .+..+++|++|+++++
T Consensus       140 ~l~~~~~~~~~~l~~L~~L~L~~N  163 (220)
T 2v70_A          140 QITTVAPGAFDTLHSLSTLNLLAN  163 (220)
T ss_dssp             CCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             cCCEECHHHhcCCCCCCEEEecCc
Confidence            444442  3444555555555554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.25  E-value=6.6e-12  Score=118.24  Aligned_cols=215  Identities=13%  Similarity=0.096  Sum_probs=114.5

Q ss_pred             CCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccch-hhhhccCCCceEEEEEecch-
Q 035891            2 KYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLV-EELLGLERLNVLTITLQSFA-   79 (309)
Q Consensus         2 ~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~-~~l~~L~~L~~L~l~~~~~~-   79 (309)
                      +.+.+|+.|++.++ ....+|.. +..+++|++|++++|.+.            ...+ ..+..+++|+.|++. +... 
T Consensus       267 ~~~~~L~~L~l~~~-~~~~l~~~-~~~~~~L~~L~Ls~~~l~------------~~~~~~~~~~~~~L~~L~L~-~~~~~  331 (592)
T 3ogk_B          267 VFPRKLCRLGLSYM-GPNEMPIL-FPFAAQIRKLDLLYALLE------------TEDHCTLIQKCPNLEVLETR-NVIGD  331 (592)
T ss_dssp             CCCTTCCEEEETTC-CTTTGGGG-GGGGGGCCEEEETTCCCC------------HHHHHHHHTTCTTCCEEEEE-GGGHH
T ss_pred             hccccccccCcccc-chhHHHHH-HhhcCCCcEEecCCCcCC------------HHHHHHHHHhCcCCCEEecc-CccCH
Confidence            34556666766665 55667764 778888999999888864            2222 346677888888876 2222 


Q ss_pred             -hhhhhcCCcCccccCCCcCeEEEec----------CCCCCeecccC-ccccccCCEEEEecCCCC--------------
Q 035891           80 -ALHRLLTSPSLQSIFSNTPSLCLRN----------CHSLSSLSVFT-LASLRHLEALDMTNCKDL--------------  133 (309)
Q Consensus        80 -~l~~~~~~~~l~~~l~~L~~L~l~~----------~~~l~~~~~~~-l~~l~~L~~L~l~~~~~l--------------  133 (309)
                       .+..+..  .    +++|++|++.+          |+.++...... ...+++|+.|++.. +.+              
T Consensus       332 ~~l~~~~~--~----~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~-~~l~~~~~~~l~~~~~~  404 (592)
T 3ogk_B          332 RGLEVLAQ--Y----CKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV-SDITNESLESIGTYLKN  404 (592)
T ss_dssp             HHHHHHHH--H----CTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEE-SCCCHHHHHHHHHHCCS
T ss_pred             HHHHHHHH--h----CCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeec-CCccHHHHHHHHhhCCC
Confidence             1222211  1    23577777774          55554332222 23355666666632 222              


Q ss_pred             -ceEEcCcc---Ccccc------cCCCcccccCcceEEEeCc-e-eccc--Ccc-CCCCCccEEEEEcCccccc-ccccc
Q 035891          134 -EEMEIDYA---GEEVK------RIRETHGFFSLHKVSIWGS-K-LRHV--TWL-ILAPNLKHIEVYNCRYLDE-IISLE  197 (309)
Q Consensus       134 -~~l~~~~~---~~~~~------~~~~~~~~~~L~~L~l~~c-~-l~~l--~~l-~~l~~L~~L~l~~c~~l~~-~~~~~  197 (309)
                       +.+.....   ....+      +......+++|++|+++.| + +.+-  ..+ ..+++|++|++++|. +++ .+.  
T Consensus       405 L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~--  481 (592)
T 3ogk_B          405 LCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLM--  481 (592)
T ss_dssp             CCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHH--
T ss_pred             CcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHH--
Confidence             22211100   00000      0000003566677776655 2 2211  111 235667777776664 222 111  


Q ss_pred             ccCCcCcccccCCccCCccceeeccccccccc--cCCCccCCCCccEEeecCcccCCC
Q 035891          198 KLGEVPSEEMQNLFPFARLESLSLYALGNLRS--IYPKALPFPHLKELEVNLCPKLEK  253 (309)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~--l~~~~~~~~~L~~L~i~~C~~L~~  253 (309)
                                .....+++|++|++++|+ ++.  ++.....+++|+.|++++|. +..
T Consensus       482 ----------~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~  527 (592)
T 3ogk_B          482 ----------EFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASM  527 (592)
T ss_dssp             ----------HHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred             ----------HHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence                      224567999999999986 442  22223368999999999996 543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.24  E-value=2.1e-11  Score=101.00  Aligned_cols=132  Identities=20%  Similarity=0.219  Sum_probs=103.3

Q ss_pred             CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhh
Q 035891            5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRL   84 (309)
Q Consensus         5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~   84 (309)
                      .+|++|++++| .+..++.+.+..+++|++|++++|.+.            ......+..+++|+.|+++.+....++..
T Consensus        40 ~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~l~------------~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~  106 (229)
T 3e6j_A           40 TNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQLG------------ALPVGVFDSLTQLTVLDLGTNQLTVLPSA  106 (229)
T ss_dssp             TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC------------CCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCCCC------------CcChhhcccCCCcCEEECCCCcCCccChh
Confidence            67999999999 898885555899999999999999996            22334468899999999987766544321


Q ss_pred             cCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeC
Q 035891           85 LTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWG  164 (309)
Q Consensus        85 ~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  164 (309)
                      . ...    +++|+.|+++++ .+..++ ..+..+++|+.|++++ +.+..++.....          .+++|+.|++.+
T Consensus       107 ~-~~~----l~~L~~L~Ls~N-~l~~lp-~~~~~l~~L~~L~L~~-N~l~~~~~~~~~----------~l~~L~~L~l~~  168 (229)
T 3e6j_A          107 V-FDR----LVHLKELFMCCN-KLTELP-RGIERLTHLTHLALDQ-NQLKSIPHGAFD----------RLSSLTHAYLFG  168 (229)
T ss_dssp             T-TTT----CTTCCEEECCSS-CCCSCC-TTGGGCTTCSEEECCS-SCCCCCCTTTTT----------TCTTCCEEECTT
T ss_pred             H-hCc----chhhCeEeccCC-cccccC-cccccCCCCCEEECCC-CcCCccCHHHHh----------CCCCCCEEEeeC
Confidence            1 112    447999999995 566776 5678899999999998 688888766554          789999999999


Q ss_pred             cee
Q 035891          165 SKL  167 (309)
Q Consensus       165 c~l  167 (309)
                      |.+
T Consensus       169 N~~  171 (229)
T 3e6j_A          169 NPW  171 (229)
T ss_dssp             SCB
T ss_pred             CCc
Confidence            843

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.24  E-value=2.3e-13  Score=124.36  Aligned_cols=121  Identities=17%  Similarity=0.209  Sum_probs=57.6

Q ss_pred             chhhhhccCCCceEEEEEecchh--hhhhcCCcCccccCCCcCeEEEecCCCCCeecc----cCccccccCCEEEEecCC
Q 035891           58 LVEELLGLERLNVLTITLQSFAA--LHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSV----FTLASLRHLEALDMTNCK  131 (309)
Q Consensus        58 ~~~~l~~L~~L~~L~l~~~~~~~--l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~----~~l~~l~~L~~L~l~~~~  131 (309)
                      ++..+..+++|+.|+++.+....  ...+...  +....++|+.|++++|. +.....    ..+..+++|+.|+++++ 
T Consensus       105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~--l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n-  180 (461)
T 1z7x_W          105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEG--LLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNN-  180 (461)
T ss_dssp             HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHH--HTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEECCSS-
T ss_pred             HHHHHccCCceeEEECCCCcCchHHHHHHHHH--HhcCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEECcCC-
Confidence            45667777888888887655442  1111110  00012257788887763 332211    13445677788877774 


Q ss_pred             CCceEEcCccCcccccCCCcccccCcceEEEeCceecc-----cC-ccCCCCCccEEEEEcC
Q 035891          132 DLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRH-----VT-WLILAPNLKHIEVYNC  187 (309)
Q Consensus       132 ~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~-----l~-~l~~l~~L~~L~l~~c  187 (309)
                      .+..........   .+.  ...++|++|++++|.+..     ++ .+..+++|++|++++|
T Consensus       181 ~i~~~~~~~l~~---~l~--~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n  237 (461)
T 1z7x_W          181 DINEAGVRVLCQ---GLK--DSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN  237 (461)
T ss_dssp             BCHHHHHHHHHH---HHH--HSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred             CcchHHHHHHHH---HHh--cCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC
Confidence            233222111100   000  013466666666663333     11 2334566666666555

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.23  E-value=2.6e-11  Score=113.28  Aligned_cols=155  Identities=17%  Similarity=0.124  Sum_probs=118.0

Q ss_pred             CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhh
Q 035891            5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRL   84 (309)
Q Consensus         5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~   84 (309)
                      .+|++|++++| .++.+| +   .+++|++|++++|.+..             ++. +..  +|+.|+++.+....++. 
T Consensus        80 ~~L~~L~Ls~N-~l~~ip-~---~l~~L~~L~Ls~N~l~~-------------ip~-l~~--~L~~L~Ls~N~l~~lp~-  137 (571)
T 3cvr_A           80 PQITVLEITQN-ALISLP-E---LPASLEYLDACDNRLST-------------LPE-LPA--SLKHLDVDNNQLTMLPE-  137 (571)
T ss_dssp             TTCSEEECCSS-CCSCCC-C---CCTTCCEEECCSSCCSC-------------CCC-CCT--TCCEEECCSSCCSCCCC-
T ss_pred             CCCCEEECcCC-CCcccc-c---ccCCCCEEEccCCCCCC-------------cch-hhc--CCCEEECCCCcCCCCCC-
Confidence            67999999999 999999 3   47999999999999862             333 333  99999998776665444 


Q ss_pred             cCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeC
Q 035891           85 LTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWG  164 (309)
Q Consensus        85 ~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  164 (309)
                          .    +++|+.|+++++ .++.++.    .+++|+.|++++ +.+..++.  .           . ++|+.|++++
T Consensus       138 ----~----l~~L~~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~-N~L~~lp~--l-----------~-~~L~~L~Ls~  189 (571)
T 3cvr_A          138 ----L----PALLEYINADNN-QLTMLPE----LPTSLEVLSVRN-NQLTFLPE--L-----------P-ESLEALDVST  189 (571)
T ss_dssp             ----C----CTTCCEEECCSS-CCSCCCC----CCTTCCEEECCS-SCCSCCCC--C-----------C-TTCCEEECCS
T ss_pred             ----c----CccccEEeCCCC-ccCcCCC----cCCCcCEEECCC-CCCCCcch--h-----------h-CCCCEEECcC
Confidence                1    347999999995 4566652    568999999998 46776654  2           4 8999999999


Q ss_pred             ceecccCccCCCCCc-------cEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccc
Q 035891          165 SKLRHVTWLILAPNL-------KHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALG  225 (309)
Q Consensus       165 c~l~~l~~l~~l~~L-------~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~  225 (309)
                      |+++.+|.  ...+|       +.|++++| .++.++             ..+..+++|+.|++++++
T Consensus       190 N~L~~lp~--~~~~L~~~~~~L~~L~Ls~N-~l~~lp-------------~~l~~l~~L~~L~L~~N~  241 (571)
T 3cvr_A          190 NLLESLPA--VPVRNHHSEETEIFFRCREN-RITHIP-------------ENILSLDPTCTIILEDNP  241 (571)
T ss_dssp             SCCSSCCC--CC--------CCEEEECCSS-CCCCCC-------------GGGGGSCTTEEEECCSSS
T ss_pred             CCCCchhh--HHHhhhcccccceEEecCCC-cceecC-------------HHHhcCCCCCEEEeeCCc
Confidence            98888875  22377       99999887 566665             456679999999999964

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.19  E-value=9.6e-12  Score=97.83  Aligned_cols=85  Identities=15%  Similarity=0.267  Sum_probs=52.7

Q ss_pred             CcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEc-CccCcccccCCCcccccCcceEEEeCceecccCc--
Q 035891           96 NTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEI-DYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVTW--  172 (309)
Q Consensus        96 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l~~--  172 (309)
                      +|+.|+++++.-...++ ..+..+++|+.|+++++ .+..++. ....          .+++|+.|++++|.+..++.  
T Consensus        72 ~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~----------~l~~L~~L~l~~N~l~~~~~~~  139 (168)
T 2ell_A           72 KLKKLELSENRIFGGLD-MLAEKLPNLTHLNLSGN-KLKDISTLEPLK----------KLECLKSLDLFNCEVTNLNDYR  139 (168)
T ss_dssp             SCCEEEEESCCCCSCCC-HHHHHCTTCCEEECBSS-SCCSSGGGGGGS----------SCSCCCEEECCSSGGGTSTTHH
T ss_pred             CCCEEECcCCcCchHHH-HHHhhCCCCCEEeccCC-ccCcchhHHHHh----------cCCCCCEEEeeCCcCcchHHHH
Confidence            46666666643322232 23345777888888774 5655542 2222          67888888888886666553  


Q ss_pred             ---cCCCCCccEEEEEcCcccccc
Q 035891          173 ---LILAPNLKHIEVYNCRYLDEI  193 (309)
Q Consensus       173 ---l~~l~~L~~L~l~~c~~l~~~  193 (309)
                         +..+++|++|++++|. ..++
T Consensus       140 ~~~~~~l~~L~~L~l~~n~-~~~~  162 (168)
T 2ell_A          140 ESVFKLLPQLTYLDGYDRE-DQEA  162 (168)
T ss_dssp             HHHHTTCSSCCEETTEETT-SCBC
T ss_pred             HHHHHhCccCcEecCCCCC-hhhc
Confidence               5678888888888874 3444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.18  E-value=4.3e-11  Score=98.51  Aligned_cols=134  Identities=10%  Similarity=0.156  Sum_probs=104.0

Q ss_pred             CCCcEEecCCCcCCCCC-chhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhh
Q 035891            5 VNLKCLNLEYTYRIYKI-PGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHR   83 (309)
Q Consensus         5 ~~Lr~L~l~~~~~l~~l-p~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~   83 (309)
                      ..+++|++++| .++.+ |.++++.+++|++|++++|.+.            ......+..+++|+.|+++.+....+..
T Consensus        32 ~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~------------~i~~~~~~~l~~L~~L~Ls~N~l~~~~~   98 (220)
T 2v70_A           32 QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKIT------------DIEEGAFEGASGVNEILLTSNRLENVQH   98 (220)
T ss_dssp             TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCC------------EECTTTTTTCTTCCEEECCSSCCCCCCG
T ss_pred             CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCC------------EECHHHhCCCCCCCEEECCCCccCccCH
Confidence            35789999999 89887 4455889999999999999996            3444578899999999998776655443


Q ss_pred             hcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEe
Q 035891           84 LLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIW  163 (309)
Q Consensus        84 ~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~  163 (309)
                      .. ...    +++|+.|+++++ .+..++...+..+++|+.|++++ +.+..+....+.          .+++|+.|+++
T Consensus        99 ~~-~~~----l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~----------~l~~L~~L~L~  161 (220)
T 2v70_A           99 KM-FKG----LESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAFD----------TLHSLSTLNLL  161 (220)
T ss_dssp             GG-GTT----CSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTTTT----------TCTTCCEEECC
T ss_pred             hH-hcC----CcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCC-CcCCEECHHHhc----------CCCCCCEEEec
Confidence            11 111    447999999995 45666546788899999999998 678887655554          78999999999


Q ss_pred             Cceec
Q 035891          164 GSKLR  168 (309)
Q Consensus       164 ~c~l~  168 (309)
                      +|.+.
T Consensus       162 ~N~l~  166 (220)
T 2v70_A          162 ANPFN  166 (220)
T ss_dssp             SCCEE
T ss_pred             CcCCc
Confidence            99443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.16  E-value=1.4e-10  Score=91.04  Aligned_cols=134  Identities=22%  Similarity=0.251  Sum_probs=97.9

Q ss_pred             CcCeEEEecCCCC-CeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCceecc-cCc-
Q 035891           96 NTPSLCLRNCHSL-SSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRH-VTW-  172 (309)
Q Consensus        96 ~L~~L~l~~~~~l-~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~-l~~-  172 (309)
                      +|+.|++++|... ..++ ..+..+++|+.|+++++ .+..+  ....          .+++|+.|++++|.+.. +|. 
T Consensus        25 ~L~~L~l~~n~l~~~~i~-~~~~~l~~L~~L~l~~n-~l~~~--~~~~----------~l~~L~~L~Ls~N~l~~~~~~~   90 (168)
T 2ell_A           25 AVRELVLDNCKSNDGKIE-GLTAEFVNLEFLSLINV-GLISV--SNLP----------KLPKLKKLELSENRIFGGLDML   90 (168)
T ss_dssp             SCSEEECCSCBCBTTBCS-SCCGGGGGCCEEEEESS-CCCCC--SSCC----------CCSSCCEEEEESCCCCSCCCHH
T ss_pred             cCCEEECCCCCCChhhHH-HHHHhCCCCCEEeCcCC-CCCCh--hhhc----------cCCCCCEEECcCCcCchHHHHH
Confidence            7899999986532 2554 34678899999999985 57766  3333          78999999999996666 553 


Q ss_pred             cCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCC----CccCCCCccEEeecCc
Q 035891          173 LILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYP----KALPFPHLKELEVNLC  248 (309)
Q Consensus       173 l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~----~~~~~~~L~~L~i~~C  248 (309)
                      ...+++|++|++++| .++.++..           ..+..+++|++|+++++ .+..++.    ....+++|+.|++++|
T Consensus        91 ~~~l~~L~~L~Ls~N-~l~~~~~~-----------~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A           91 AEKLPNLTHLNLSGN-KLKDISTL-----------EPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             HHHCTTCCEEECBSS-SCCSSGGG-----------GGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred             HhhCCCCCEEeccCC-ccCcchhH-----------HHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCC
Confidence            345899999999988 45554210           25678899999999996 6777765    3457899999999998


Q ss_pred             ccCCCCCCC
Q 035891          249 PKLEKLPFD  257 (309)
Q Consensus       249 ~~L~~lp~~  257 (309)
                       .++.+|..
T Consensus       158 -~~~~~~~~  165 (168)
T 2ell_A          158 -EDQEAPDS  165 (168)
T ss_dssp             -TSCBCCSS
T ss_pred             -Chhhcccc
Confidence             45555543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.16  E-value=1.7e-10  Score=100.74  Aligned_cols=86  Identities=19%  Similarity=0.118  Sum_probs=49.0

Q ss_pred             ccCcceEEEeCceecccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccc-eeecccccccccc
Q 035891          154 FFSLHKVSIWGSKLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLE-SLSLYALGNLRSI  230 (309)
Q Consensus       154 ~~~L~~L~l~~c~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~L~~~~~L~~l  230 (309)
                      +++|+.|++.+|+++.++  .+..+++|+.|++.+.  ++.+..            ..+..+++|+ .+.+.+  .++.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~------------~aF~~~~~L~~~l~l~~--~l~~I  288 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQ------------RVFSNCGRLAGTLELPA--SVTAI  288 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECT------------TTTTTCTTCCEEEEECT--TCCEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehH------------HHhhCChhccEEEEEcc--cceEE
Confidence            556666666666555554  3455666666666553  444432            3455666666 666665  56666


Q ss_pred             CCCcc-CCCCccEEeecCcccCCCCCC
Q 035891          231 YPKAL-PFPHLKELEVNLCPKLEKLPF  256 (309)
Q Consensus       231 ~~~~~-~~~~L~~L~i~~C~~L~~lp~  256 (309)
                      +...+ .+++|+.+++.. .+++.++.
T Consensus       289 ~~~aF~~c~~L~~l~l~~-n~i~~I~~  314 (329)
T 3sb4_A          289 EFGAFMGCDNLRYVLATG-DKITTLGD  314 (329)
T ss_dssp             CTTTTTTCTTEEEEEECS-SCCCEECT
T ss_pred             chhhhhCCccCCEEEeCC-CccCccch
Confidence            55444 566666666644 24554443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.13  E-value=3.7e-12  Score=119.94  Aligned_cols=158  Identities=16%  Similarity=0.205  Sum_probs=90.3

Q ss_pred             CCCCCcEEecCCCcCCCCC---c-----------hhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhh-ccCC
Q 035891            3 YLVNLKCLNLEYTYRIYKI---P-----------GQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELL-GLER   67 (309)
Q Consensus         3 ~L~~Lr~L~l~~~~~l~~l---p-----------~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~-~L~~   67 (309)
                      ++++|++|+++++..+..+   |           ..+...+++|++|++++|.+.            ...+..+. .+++
T Consensus        64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~------------~~~~~~l~~~~~~  131 (594)
T 2p1m_B           64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVT------------DDCLELIAKSFKN  131 (594)
T ss_dssp             HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCC------------HHHHHHHHHHCTT
T ss_pred             hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEc------------HHHHHHHHHhCCC
Confidence            3577888888887434322   1           122456788888888888775            45555564 6788


Q ss_pred             CceEEEEEec-ch--hhhhhcCCcCccccCCCcCeEEEecCCCCCeeccc----CccccccCCEEEEecCCCCceEEcCc
Q 035891           68 LNVLTITLQS-FA--ALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVF----TLASLRHLEALDMTNCKDLEEMEIDY  140 (309)
Q Consensus        68 L~~L~l~~~~-~~--~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~----~l~~l~~L~~L~l~~~~~l~~l~~~~  140 (309)
                      |+.|++..+. ..  .++.+..  .    +++|++|++++|. +......    ....+++|+.|++++|.  ..+....
T Consensus       132 L~~L~L~~~~~~~~~~l~~~~~--~----~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~  202 (594)
T 2p1m_B          132 FKVLVLSSCEGFSTDGLAAIAA--T----CRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSA  202 (594)
T ss_dssp             CCEEEEESCEEEEHHHHHHHHH--H----CTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHH
T ss_pred             CcEEeCCCcCCCCHHHHHHHHH--h----CCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHH
Confidence            8888887442 22  2333321  1    3368888888765 2222111    12356688888888764  1111111


Q ss_pred             cCcccccCCCcccccCcceEEEeCc-eecccC-ccCCCCCccEEEEEcC
Q 035891          141 AGEEVKRIRETHGFFSLHKVSIWGS-KLRHVT-WLILAPNLKHIEVYNC  187 (309)
Q Consensus       141 ~~~~~~~~~~~~~~~~L~~L~l~~c-~l~~l~-~l~~l~~L~~L~l~~c  187 (309)
                      ...   .   ...+++|++|++++| .+..++ .+..+++|++|.+..|
T Consensus       203 l~~---l---~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~  245 (594)
T 2p1m_B          203 LER---L---VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY  245 (594)
T ss_dssp             HHH---H---HHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred             HHH---H---HHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence            000   0   003578888888877 555443 3445677777765443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.12  E-value=5.6e-12  Score=118.73  Aligned_cols=135  Identities=13%  Similarity=0.106  Sum_probs=73.2

Q ss_pred             CcCeEEEecCCCCCeecccCcc-ccccCCEEEEe-----cCCCCceEEcCccCcccccCCCcccccCcceEEEeCc-eec
Q 035891           96 NTPSLCLRNCHSLSSLSVFTLA-SLRHLEALDMT-----NCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGS-KLR  168 (309)
Q Consensus        96 ~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~-----~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c-~l~  168 (309)
                      +|+.|.+. |+.++......+. .+++|+.|++.     +|+.+...+.+...  ...   ...+++|+.|+++++ .-.
T Consensus       373 ~L~~L~~~-~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~--~~l---~~~~~~L~~L~L~~~l~~~  446 (594)
T 2p1m_B          373 KLESVLYF-CRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGF--GAI---VEHCKDLRRLSLSGLLTDK  446 (594)
T ss_dssp             TCCEEEEE-ESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHH--HHH---HHHCTTCCEEECCSSCCHH
T ss_pred             hHHHHHHh-cCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHH--HHH---HhhCCCccEEeecCcccHH
Confidence            56666433 3444433222232 46677777777     45555533321000  000   004677888888664 211


Q ss_pred             ccCccCC-CCCccEEEEEcCccccccccccccCCcCcccccCC-ccCCccceeeccccccccccCC--CccCCCCccEEe
Q 035891          169 HVTWLIL-APNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNL-FPFARLESLSLYALGNLRSIYP--KALPFPHLKELE  244 (309)
Q Consensus       169 ~l~~l~~-l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~L~~~~~L~~l~~--~~~~~~~L~~L~  244 (309)
                      .++.+.. +++|++|++++|......+             ..+ ..+++|++|++++|+. +....  ....+++|+.|+
T Consensus       447 ~~~~l~~~~~~L~~L~L~~~~i~~~~~-------------~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~  512 (594)
T 2p1m_B          447 VFEYIGTYAKKMEMLSVAFAGDSDLGM-------------HHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLW  512 (594)
T ss_dssp             HHHHHHHHCTTCCEEEEESCCSSHHHH-------------HHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEE
T ss_pred             HHHHHHHhchhccEeeccCCCCcHHHH-------------HHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEe
Confidence            1222333 7888888888775322211             122 5688999999998853 32221  223578999999


Q ss_pred             ecCccc
Q 035891          245 VNLCPK  250 (309)
Q Consensus       245 i~~C~~  250 (309)
                      +++|+.
T Consensus       513 l~~~~~  518 (594)
T 2p1m_B          513 MSSCSV  518 (594)
T ss_dssp             EESSCC
T ss_pred             eeCCCC
Confidence            999865

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.11  E-value=5.3e-12  Score=118.91  Aligned_cols=57  Identities=18%  Similarity=0.107  Sum_probs=38.3

Q ss_pred             CCCCCcEEecCCCcCCCC-----CchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEE
Q 035891            3 YLVNLKCLNLEYTYRIYK-----IPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTIT   74 (309)
Q Consensus         3 ~L~~Lr~L~l~~~~~l~~-----lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~   74 (309)
                      ++++|++|++++| .++.     ++. ++.++++|++|++++|.+.             ..+..++.+++|+.|++.
T Consensus       190 ~~~~L~~L~L~~n-~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~-------------~l~~~~~~~~~L~~L~l~  251 (592)
T 3ogk_B          190 HNTSLEVLNFYMT-EFAKISPKDLET-IARNCRSLVSVKVGDFEIL-------------ELVGFFKAAANLEEFCGG  251 (592)
T ss_dssp             HCCCCCEEECTTC-CCSSCCHHHHHH-HHHHCTTCCEEECSSCBGG-------------GGHHHHHHCTTCCEEEEC
T ss_pred             cCCCccEEEeecc-CCCccCHHHHHH-HHhhCCCCcEEeccCccHH-------------HHHHHHhhhhHHHhhccc
Confidence            4678888888888 6652     333 3567888888888887763             344555556666666654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.07  E-value=3.2e-11  Score=92.82  Aligned_cols=59  Identities=24%  Similarity=0.315  Sum_probs=42.7

Q ss_pred             CCCCCcEEecCCCcCCC--CCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEec
Q 035891            3 YLVNLKCLNLEYTYRIY--KIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQS   77 (309)
Q Consensus         3 ~L~~Lr~L~l~~~~~l~--~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~   77 (309)
                      ...+|++|++++| .+.  .+|.. ++.+++|++|++++|.+.            . . ..++.+++|+.|+++.+.
T Consensus        15 ~~~~l~~L~l~~n-~l~~~~~~~~-~~~l~~L~~L~l~~n~l~------------~-~-~~~~~l~~L~~L~Ls~n~   75 (149)
T 2je0_A           15 TPSDVKELVLDNS-RSNEGKLEGL-TDEFEELEFLSTINVGLT------------S-I-ANLPKLNKLKKLELSDNR   75 (149)
T ss_dssp             CGGGCSEEECTTC-BCBTTBCCSC-CTTCTTCCEEECTTSCCC------------C-C-TTCCCCTTCCEEECCSSC
T ss_pred             CCccCeEEEccCC-cCChhHHHHH-HhhcCCCcEEECcCCCCC------------C-c-hhhhcCCCCCEEECCCCc
Confidence            3467899999999 777  78875 788999999999998885            1 2 445556666666554433

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.05  E-value=1.5e-10  Score=91.77  Aligned_cols=16  Identities=13%  Similarity=-0.083  Sum_probs=8.7

Q ss_pred             cCCCCCceEEecccCC
Q 035891           27 SNLKMLEALRMFKCGS   42 (309)
Q Consensus        27 ~~L~~L~~L~l~~~~~   42 (309)
                      .++.+|++|++++|.+
T Consensus        16 ~~~~~L~~L~l~~n~l   31 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKI   31 (176)
T ss_dssp             ECTTSCEEEECTTSCC
T ss_pred             CCcCCceEEEeeCCCC
Confidence            4455555555555555

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.03  E-value=6.8e-10  Score=89.37  Aligned_cols=122  Identities=16%  Similarity=0.200  Sum_probs=71.7

Q ss_pred             cEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhcCC
Q 035891            8 KCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLLTS   87 (309)
Q Consensus         8 r~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~~~   87 (309)
                      ++++++++ .++.+|.+ +.  ++|++|++++|.+.             .++..+..+++|+.|+++.+...        
T Consensus        13 ~~l~~~~~-~l~~ip~~-~~--~~l~~L~L~~n~i~-------------~ip~~~~~l~~L~~L~Ls~N~i~--------   67 (193)
T 2wfh_A           13 TVVRCSNK-GLKVLPKG-IP--RDVTELYLDGNQFT-------------LVPKELSNYKHLTLIDLSNNRIS--------   67 (193)
T ss_dssp             TEEECTTS-CCSSCCSC-CC--TTCCEEECCSSCCC-------------SCCGGGGGCTTCCEEECCSSCCC--------
T ss_pred             CEEEcCCC-CCCcCCCC-CC--CCCCEEECCCCcCc-------------hhHHHhhcccCCCEEECCCCcCC--------
Confidence            67889988 89999976 43  68999999999884             34456666677777666544332        


Q ss_pred             cCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCcee
Q 035891           88 PSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKL  167 (309)
Q Consensus        88 ~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l  167 (309)
                                            .++...+..+++|+.|++++ +.+..++...+.          .+++|+.|++++|.+
T Consensus        68 ----------------------~i~~~~f~~l~~L~~L~Ls~-N~l~~i~~~~f~----------~l~~L~~L~L~~N~l  114 (193)
T 2wfh_A           68 ----------------------TLSNQSFSNMTQLLTLILSY-NRLRCIPPRTFD----------GLKSLRLLSLHGNDI  114 (193)
T ss_dssp             ----------------------CCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTT----------TCTTCCEEECCSSCC
T ss_pred             ----------------------EeCHhHccCCCCCCEEECCC-CccCEeCHHHhC----------CCCCCCEEECCCCCC
Confidence                                  22222344455555555555 344444443332          455555555555544


Q ss_pred             cccCc--cCCCCCccEEEEEcC
Q 035891          168 RHVTW--LILAPNLKHIEVYNC  187 (309)
Q Consensus       168 ~~l~~--l~~l~~L~~L~l~~c  187 (309)
                      ..++.  +..+++|++|+++++
T Consensus       115 ~~~~~~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A          115 SVVPEGAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             CBCCTTTTTTCTTCCEEECCSS
T ss_pred             CeeChhhhhcCccccEEEeCCC
Confidence            44442  344555666655544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.01  E-value=1.1e-09  Score=88.02  Aligned_cols=125  Identities=11%  Similarity=0.157  Sum_probs=73.2

Q ss_pred             CcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchh-hhhccCCCceEEEEEecchhhhhhc
Q 035891            7 LKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVE-ELLGLERLNVLTITLQSFAALHRLL   85 (309)
Q Consensus         7 Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~-~l~~L~~L~~L~l~~~~~~~l~~~~   85 (309)
                      -++++++++ .++.+|.. +..  +|++|++++|.+..+            ... .++.+++|+.|+++.+..       
T Consensus        10 ~~~l~~s~~-~l~~ip~~-~~~--~l~~L~l~~n~i~~~------------~~~~~~~~l~~L~~L~Ls~N~l-------   66 (192)
T 1w8a_A           10 GTTVDCTGR-GLKEIPRD-IPL--HTTELLLNDNELGRI------------SSDGLFGRLPHLVKLELKRNQL-------   66 (192)
T ss_dssp             TTEEECTTS-CCSSCCSC-CCT--TCSEEECCSCCCCSB------------CCSCSGGGCTTCCEEECCSSCC-------
T ss_pred             CCEEEcCCC-CcCcCccC-CCC--CCCEEECCCCcCCcc------------CCccccccCCCCCEEECCCCCC-------
Confidence            378999999 89999986 443  899999999988521            111 255566666665543332       


Q ss_pred             CCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCc
Q 035891           86 TSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGS  165 (309)
Q Consensus        86 ~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c  165 (309)
                                             +.+....+..+++|+.|++++ +.+..++...+.          .+++|+.|++++|
T Consensus        67 -----------------------~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~----------~l~~L~~L~L~~N  112 (192)
T 1w8a_A           67 -----------------------TGIEPNAFEGASHIQELQLGE-NKIKEISNKMFL----------GLHQLKTLNLYDN  112 (192)
T ss_dssp             -----------------------CCBCTTTTTTCTTCCEEECCS-CCCCEECSSSST----------TCTTCCEEECCSS
T ss_pred             -----------------------CCcCHhHcCCcccCCEEECCC-CcCCccCHHHhc----------CCCCCCEEECCCC
Confidence                                   222213444555566666655 455555544333          4566666666666


Q ss_pred             eecccC--ccCCCCCccEEEEEcCc
Q 035891          166 KLRHVT--WLILAPNLKHIEVYNCR  188 (309)
Q Consensus       166 ~l~~l~--~l~~l~~L~~L~l~~c~  188 (309)
                      ++..++  .+..+++|++|++++++
T Consensus       113 ~l~~~~~~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A          113 QISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             cCCeeCHHHhhcCCCCCEEEeCCCC
Confidence            444332  34455666666665553

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.96  E-value=9.4e-10  Score=87.08  Aligned_cols=124  Identities=15%  Similarity=0.207  Sum_probs=73.3

Q ss_pred             CcCeEEEecCCCCCeecccCccccc-cCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCceecccCc--
Q 035891           96 NTPSLCLRNCHSLSSLSVFTLASLR-HLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVTW--  172 (309)
Q Consensus        96 ~L~~L~l~~~~~l~~~~~~~l~~l~-~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l~~--  172 (309)
                      +|+.|+++++ .++.+  +.+..+. +|+.|++++ +.+..+  ....          .+++|+.|++++|.+..++.  
T Consensus        20 ~L~~L~l~~n-~l~~i--~~~~~~~~~L~~L~Ls~-N~l~~~--~~l~----------~l~~L~~L~Ls~N~l~~~~~~~   83 (176)
T 1a9n_A           20 RDRELDLRGY-KIPVI--ENLGATLDQFDAIDFSD-NEIRKL--DGFP----------LLRRLKTLLVNNNRICRIGEGL   83 (176)
T ss_dssp             SCEEEECTTS-CCCSC--CCGGGGTTCCSEEECCS-SCCCEE--CCCC----------CCSSCCEEECCSSCCCEECSCH
T ss_pred             CceEEEeeCC-CCchh--HHhhhcCCCCCEEECCC-CCCCcc--cccc----------cCCCCCEEECCCCcccccCcch
Confidence            5666777664 33444  2333333 777777777 456665  2222          56777777777775555542  


Q ss_pred             cCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCC----ccCCCCccEEeecCc
Q 035891          173 LILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPK----ALPFPHLKELEVNLC  248 (309)
Q Consensus       173 l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~----~~~~~~L~~L~i~~C  248 (309)
                      +..+++|++|++++|. ++.++..           ..+..+++|+.|++.++ .+..++..    ...+|+|+.|+++++
T Consensus        84 ~~~l~~L~~L~L~~N~-i~~~~~~-----------~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           84 DQALPDLTELILTNNS-LVELGDL-----------DPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             HHHCTTCCEEECCSCC-CCCGGGG-----------GGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             hhcCCCCCEEECCCCc-CCcchhh-----------HhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcC
Confidence            3567777777777663 4444310           13556777777777775 45555543    336677777776655

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.93  E-value=3e-09  Score=84.17  Aligned_cols=125  Identities=14%  Similarity=0.096  Sum_probs=77.2

Q ss_pred             CcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhcC
Q 035891            7 LKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLLT   86 (309)
Q Consensus         7 Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~~   86 (309)
                      .+.++++++ .++.+|.+ +  .++|++|++++|.+.            ......+..+++|+.|+++            
T Consensus         9 ~~~l~~~~~-~l~~~p~~-~--~~~l~~L~l~~n~l~------------~~~~~~~~~l~~L~~L~l~------------   60 (177)
T 2o6r_A            9 GTEIRCNSK-GLTSVPTG-I--PSSATRLELESNKLQ------------SLPHGVFDKLTQLTKLSLS------------   60 (177)
T ss_dssp             TTEEECCSS-CCSSCCTT-C--CTTCSEEECCSSCCC------------CCCTTTTTTCTTCSEEECC------------
T ss_pred             CCEEEecCC-CCccCCCC-C--CCCCcEEEeCCCccc------------EeCHHHhcCcccccEEECC------------
Confidence            578889988 88999975 3  378999999998885            2222234555555555554            


Q ss_pred             CcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCce
Q 035891           87 SPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSK  166 (309)
Q Consensus        87 ~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  166 (309)
                                       ++ .+..++...+..+++|+.|++++ +.+..++.....          .+++|+.|++++|.
T Consensus        61 -----------------~n-~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~----------~l~~L~~L~l~~N~  111 (177)
T 2o6r_A           61 -----------------QN-QIQSLPDGVFDKLTKLTILYLHE-NKLQSLPNGVFD----------KLTQLKELALDTNQ  111 (177)
T ss_dssp             -----------------SS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTT----------TCTTCCEEECCSSC
T ss_pred             -----------------CC-cceEeChhHccCCCccCEEECCC-CCccccCHHHhh----------CCcccCEEECcCCc
Confidence                             32 23333323345566666666666 455555544433          56677777777775


Q ss_pred             ecccCc--cCCCCCccEEEEEcCc
Q 035891          167 LRHVTW--LILAPNLKHIEVYNCR  188 (309)
Q Consensus       167 l~~l~~--l~~l~~L~~L~l~~c~  188 (309)
                      +..++.  +..+++|++|++++++
T Consensus       112 l~~~~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A          112 LKSVPDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ceEeCHHHhcCCcccCEEEecCCC
Confidence            555552  3456777777777664

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.92  E-value=5.8e-10  Score=85.66  Aligned_cols=108  Identities=20%  Similarity=0.154  Sum_probs=75.8

Q ss_pred             CCCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchh
Q 035891            1 LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAA   80 (309)
Q Consensus         1 l~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~   80 (309)
                      ++.+.+|++|++++| .++.+ .. ++.+++|++|++++|.+.            ...+..++.+++|+.|+++.+....
T Consensus        38 ~~~l~~L~~L~l~~n-~l~~~-~~-~~~l~~L~~L~Ls~n~i~------------~~~~~~~~~l~~L~~L~ls~N~i~~  102 (149)
T 2je0_A           38 TDEFEELEFLSTINV-GLTSI-AN-LPKLNKLKKLELSDNRVS------------GGLEVLAEKCPNLTHLNLSGNKIKD  102 (149)
T ss_dssp             CTTCTTCCEEECTTS-CCCCC-TT-CCCCTTCCEEECCSSCCC------------SCTHHHHHHCTTCCEEECTTSCCCS
T ss_pred             HhhcCCCcEEECcCC-CCCCc-hh-hhcCCCCCEEECCCCccc------------chHHHHhhhCCCCCEEECCCCcCCC
Confidence            467899999999999 89888 43 899999999999999996            3356667778889998887666555


Q ss_pred             hhhhcCCcCccccCCCcCeEEEecCCCCCeecc---cCccccccCCEEEEe
Q 035891           81 LHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSV---FTLASLRHLEALDMT  128 (309)
Q Consensus        81 l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~---~~l~~l~~L~~L~l~  128 (309)
                      ++.......    +++|+.|+++++ .+...+.   ..+..+++|+.|+++
T Consensus       103 ~~~~~~~~~----l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A          103 LSTIEPLKK----LENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             HHHHGGGGG----CTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             hHHHHHHhh----CCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence            432222222    335777777775 3444432   235566677766554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.89  E-value=4.3e-09  Score=84.64  Aligned_cols=107  Identities=17%  Similarity=0.233  Sum_probs=74.8

Q ss_pred             CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhh
Q 035891            5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRL   84 (309)
Q Consensus         5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~   84 (309)
                      .+|++|++++| .++.+|.. +..+++|++|++++|.+.            ......+..+++|+.|+++.+        
T Consensus        31 ~~l~~L~L~~n-~i~~ip~~-~~~l~~L~~L~Ls~N~i~------------~i~~~~f~~l~~L~~L~Ls~N--------   88 (193)
T 2wfh_A           31 RDVTELYLDGN-QFTLVPKE-LSNYKHLTLIDLSNNRIS------------TLSNQSFSNMTQLLTLILSYN--------   88 (193)
T ss_dssp             TTCCEEECCSS-CCCSCCGG-GGGCTTCCEEECCSSCCC------------CCCTTTTTTCTTCCEEECCSS--------
T ss_pred             CCCCEEECCCC-cCchhHHH-hhcccCCCEEECCCCcCC------------EeCHhHccCCCCCCEEECCCC--------
Confidence            47999999999 99999976 999999999999999996            333344566666666655433        


Q ss_pred             cCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeC
Q 035891           85 LTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWG  164 (309)
Q Consensus        85 ~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  164 (309)
                                            .+..++...+..+++|+.|++++ +.+..++...+.          .+++|+.|++++
T Consensus        89 ----------------------~l~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~----------~l~~L~~L~L~~  135 (193)
T 2wfh_A           89 ----------------------RLRCIPPRTFDGLKSLRLLSLHG-NDISVVPEGAFN----------DLSALSHLAIGA  135 (193)
T ss_dssp             ----------------------CCCBCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTT----------TCTTCCEEECCS
T ss_pred             ----------------------ccCEeCHHHhCCCCCCCEEECCC-CCCCeeChhhhh----------cCccccEEEeCC
Confidence                                  23333323456666777777776 566666655443          567777777777


Q ss_pred             ce
Q 035891          165 SK  166 (309)
Q Consensus       165 c~  166 (309)
                      |.
T Consensus       136 N~  137 (193)
T 2wfh_A          136 NP  137 (193)
T ss_dssp             SC
T ss_pred             CC
Confidence            63

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.86  E-value=7.7e-10  Score=106.66  Aligned_cols=111  Identities=20%  Similarity=0.229  Sum_probs=84.4

Q ss_pred             CCCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchh
Q 035891            1 LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAA   80 (309)
Q Consensus         1 l~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~   80 (309)
                      +..+.+|++|+|++| .+..+|.. +.++++|++|++++|.+.             .++..+..|++|+.|+++.+....
T Consensus       220 ~~~l~~L~~L~Ls~n-~l~~l~~~-~~~l~~L~~L~Ls~N~l~-------------~lp~~~~~l~~L~~L~Ls~N~l~~  284 (727)
T 4b8c_D          220 KYDDQLWHALDLSNL-QIFNISAN-IFKYDFLTRLYLNGNSLT-------------ELPAEIKNLSNLRVLDLSHNRLTS  284 (727)
T ss_dssp             --CCCCCCEEECTTS-CCSCCCGG-GGGCCSCSCCBCTTSCCS-------------CCCGGGGGGTTCCEEECTTSCCSS
T ss_pred             hccCCCCcEEECCCC-CCCCCChh-hcCCCCCCEEEeeCCcCc-------------ccChhhhCCCCCCEEeCcCCcCCc
Confidence            356788999999999 88899987 778999999999999884             566778889999999997776654


Q ss_pred             hhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCce
Q 035891           81 LHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEE  135 (309)
Q Consensus        81 l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~  135 (309)
                      ++..     +.. +++|+.|+++++ .+..+| ..+..+++|+.|+++++ .+..
T Consensus       285 lp~~-----~~~-l~~L~~L~L~~N-~l~~lp-~~~~~l~~L~~L~L~~N-~l~~  330 (727)
T 4b8c_D          285 LPAE-----LGS-CFQLKYFYFFDN-MVTTLP-WEFGNLCNLQFLGVEGN-PLEK  330 (727)
T ss_dssp             CCSS-----GGG-GTTCSEEECCSS-CCCCCC-SSTTSCTTCCCEECTTS-CCCS
T ss_pred             cChh-----hcC-CCCCCEEECCCC-CCCccC-hhhhcCCCccEEeCCCC-ccCC
Confidence            4322     111 457999999985 556776 35888899999999984 5543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.85  E-value=3.2e-09  Score=99.37  Aligned_cols=119  Identities=19%  Similarity=0.227  Sum_probs=63.2

Q ss_pred             CCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhc
Q 035891            6 NLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLL   85 (309)
Q Consensus         6 ~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~   85 (309)
                      .|++|++++| .++.+|.  ++.+++|++|++++|.+.             .++..++.+++|+.|+++.+.        
T Consensus       442 ~L~~L~Ls~n-~l~~lp~--~~~l~~L~~L~Ls~N~l~-------------~lp~~~~~l~~L~~L~Ls~N~--------  497 (567)
T 1dce_A          442 DVRVLHLAHK-DLTVLCH--LEQLLLVTHLDLSHNRLR-------------ALPPALAALRCLEVLQASDNA--------  497 (567)
T ss_dssp             TCSEEECTTS-CCSSCCC--GGGGTTCCEEECCSSCCC-------------CCCGGGGGCTTCCEEECCSSC--------
T ss_pred             CceEEEecCC-CCCCCcC--ccccccCcEeecCccccc-------------ccchhhhcCCCCCEEECCCCC--------
Confidence            3566666666 6666664  566666666666666663             334455555555555554333        


Q ss_pred             CCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEE-cCccCcccccCCCcccccCcceEEEeC
Q 035891           86 TSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEME-IDYAGEEVKRIRETHGFFSLHKVSIWG  164 (309)
Q Consensus        86 ~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~~~~~~~~~~~~L~~L~l~~  164 (309)
                                            ++.+|  .+..+++|+.|++++ +.+..+. ....+          .+++|+.|++++
T Consensus       498 ----------------------l~~lp--~l~~l~~L~~L~Ls~-N~l~~~~~p~~l~----------~l~~L~~L~L~~  542 (567)
T 1dce_A          498 ----------------------LENVD--GVANLPRLQELLLCN-NRLQQSAAIQPLV----------SCPRLVLLNLQG  542 (567)
T ss_dssp             ----------------------CCCCG--GGTTCSSCCEEECCS-SCCCSSSTTGGGG----------GCTTCCEEECTT
T ss_pred             ----------------------CCCCc--ccCCCCCCcEEECCC-CCCCCCCCcHHHh----------cCCCCCEEEecC
Confidence                                  33332  345555666666655 3444442 22222          456666666666


Q ss_pred             ceecccCc-----cCCCCCccEEE
Q 035891          165 SKLRHVTW-----LILAPNLKHIE  183 (309)
Q Consensus       165 c~l~~l~~-----l~~l~~L~~L~  183 (309)
                      |.+..+|.     ...+|+|+.|+
T Consensus       543 N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          543 NSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             SGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CcCCCCccHHHHHHHHCcccCccC
Confidence            64444431     12256666664

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.84  E-value=1.7e-07  Score=84.00  Aligned_cols=79  Identities=22%  Similarity=0.196  Sum_probs=42.4

Q ss_pred             cccCcceEEEeCceec-----ccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccc
Q 035891          153 GFFSLHKVSIWGSKLR-----HVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALG  225 (309)
Q Consensus       153 ~~~~L~~L~l~~c~l~-----~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~  225 (309)
                      .+++|+.+.+.++...     .++  .+..+++|+.+++.+  .++.+..            ..+..+++|+.+.|..  
T Consensus       269 ~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~------------~aF~~c~~L~~l~lp~--  332 (401)
T 4fdw_A          269 YCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQ------------GLLGGNRKVTQLTIPA--  332 (401)
T ss_dssp             TCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECT------------TTTTTCCSCCEEEECT--
T ss_pred             CCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhh------------hhhcCCCCccEEEECc--
Confidence            4556666665554111     122  234455556555542  2433322            3455667777777753  


Q ss_pred             cccccCCCcc-CCCCccEEeecCc
Q 035891          226 NLRSIYPKAL-PFPHLKELEVNLC  248 (309)
Q Consensus       226 ~L~~l~~~~~-~~~~L~~L~i~~C  248 (309)
                      .++.+....+ .+ +|+.+.+.+.
T Consensus       333 ~l~~I~~~aF~~~-~L~~l~l~~n  355 (401)
T 4fdw_A          333 NVTQINFSAFNNT-GIKEVKVEGT  355 (401)
T ss_dssp             TCCEECTTSSSSS-CCCEEEECCS
T ss_pred             cccEEcHHhCCCC-CCCEEEEcCC
Confidence            4666666555 44 7777777764

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.83  E-value=9.1e-09  Score=81.33  Aligned_cols=109  Identities=19%  Similarity=0.224  Sum_probs=71.3

Q ss_pred             CCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhh
Q 035891            4 LVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHR   83 (309)
Q Consensus         4 L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~   83 (309)
                      ..+|++|++++| .++.+|.+.++.+++|++|++++|.+..            .....+..+++|+.|+++.+       
T Consensus        27 ~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------~~~~~~~~l~~L~~L~l~~N-------   86 (177)
T 2o6r_A           27 PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQIQS------------LPDGVFDKLTKLTILYLHEN-------   86 (177)
T ss_dssp             CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCC------------CCTTTTTTCTTCCEEECCSS-------
T ss_pred             CCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCcceE------------eChhHccCCCccCEEECCCC-------
Confidence            368999999999 8999988767999999999999999862            22223455555555555433       


Q ss_pred             hcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEe
Q 035891           84 LLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIW  163 (309)
Q Consensus        84 ~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~  163 (309)
                                             .++.++...+..+++|+.|++++ +.+..++.....          .+++|+.|+++
T Consensus        87 -----------------------~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~----------~l~~L~~L~l~  132 (177)
T 2o6r_A           87 -----------------------KLQSLPNGVFDKLTQLKELALDT-NQLKSVPDGIFD----------RLTSLQKIWLH  132 (177)
T ss_dssp             -----------------------CCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTT----------TCTTCCEEECC
T ss_pred             -----------------------CccccCHHHhhCCcccCEEECcC-CcceEeCHHHhc----------CCcccCEEEec
Confidence                                   23333323345566666666666 355555544433          46677777777


Q ss_pred             Cce
Q 035891          164 GSK  166 (309)
Q Consensus       164 ~c~  166 (309)
                      +|.
T Consensus       133 ~N~  135 (177)
T 2o6r_A          133 TNP  135 (177)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            663

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.81  E-value=2.3e-10  Score=92.50  Aligned_cols=48  Identities=23%  Similarity=0.313  Sum_probs=31.9

Q ss_pred             CCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchh
Q 035891           18 IYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAA   80 (309)
Q Consensus        18 l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~   80 (309)
                      ++.+|.. ++++++|++|++++|.+.             .++ .+..+++|+.|+++.+....
T Consensus        37 l~~l~~~-~~~l~~L~~L~ls~n~l~-------------~l~-~~~~l~~L~~L~l~~n~l~~   84 (198)
T 1ds9_A           37 IEKMDAT-LSTLKACKHLALSTNNIE-------------KIS-SLSGMENLRILSLGRNLIKK   84 (198)
T ss_dssp             CCCCHHH-HHHTTTCSEEECSEEEES-------------CCC-CHHHHTTCCEEEEEEEEECS
T ss_pred             HhhhhHH-HhcCCCCCEEECCCCCCc-------------ccc-ccccCCCCCEEECCCCCccc
Confidence            4445555 778888888888887774             233 66677777777777665443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.80  E-value=1.4e-08  Score=88.56  Aligned_cols=205  Identities=11%  Similarity=0.039  Sum_probs=127.2

Q ss_pred             CCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCcc--------ccCCccc--------chhhhhccCC
Q 035891            4 LVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSI--------LFGGSLV--------LVEELLGLER   67 (309)
Q Consensus         4 L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~--------l~~~~~~--------~~~~l~~L~~   67 (309)
                      +.+|+.|++..  .++.|+..+|..|++|+.+++.++.+..++.++.        +......        ....+..+..
T Consensus       100 ~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~  177 (329)
T 3sb4_A          100 KQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP  177 (329)
T ss_dssp             CTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred             cCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence            78999999987  5888998889999999999999888764443310        0000000        0000112223


Q ss_pred             Cc-eEEEEEecchhhhhhcC--CcCccccCCCcCeEEEecCCCCCeecccCc-cccccCCEEEEecCCCCceEEcCccCc
Q 035891           68 LN-VLTITLQSFAALHRLLT--SPSLQSIFSNTPSLCLRNCHSLSSLSVFTL-ASLRHLEALDMTNCKDLEEMEIDYAGE  143 (309)
Q Consensus        68 L~-~L~l~~~~~~~l~~~~~--~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~l~~l~~~~~~~  143 (309)
                      |+ .+.+  .....++....  ...    ..++..+.+.+.-  .......+ ..+++|+.+++.. +.++.++...+. 
T Consensus       178 L~~~i~~--~~~~~l~~~~~~~~~~----~~~~~~l~~~~~l--~~~~~~~l~~~~~~L~~l~L~~-n~i~~I~~~aF~-  247 (329)
T 3sb4_A          178 LETTIQV--GAMGKLEDEIMKAGLQ----PRDINFLTIEGKL--DNADFKLIRDYMPNLVSLDISK-TNATTIPDFTFA-  247 (329)
T ss_dssp             CEEEEEE--CTTCCHHHHHHHTTCC----GGGCSEEEEEECC--CHHHHHHHHHHCTTCCEEECTT-BCCCEECTTTTT-
T ss_pred             cceeEEe--cCCCcHHHHHhhcccC----ccccceEEEeeee--cHHHHHHHHHhcCCCeEEECCC-CCcceecHhhhh-
Confidence            33 1211  11122221110  001    1245666666531  11111112 2368899999997 568899887775 


Q ss_pred             ccccCCCcccccCcceEEEeCceecccC--ccCCCCCcc-EEEEEcCccccccccccccCCcCcccccCCccCCccceee
Q 035891          144 EVKRIRETHGFFSLHKVSIWGSKLRHVT--WLILAPNLK-HIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLS  220 (309)
Q Consensus       144 ~~~~~~~~~~~~~L~~L~l~~c~l~~l~--~l~~l~~L~-~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  220 (309)
                               .+.+|+.|++.++ ++.++  .+..+++|+ .+++.+  .++.+..            ..+..+++|+.+.
T Consensus       248 ---------~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~------------~aF~~c~~L~~l~  303 (329)
T 3sb4_A          248 ---------QKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEF------------GAFMGCDNLRYVL  303 (329)
T ss_dssp             ---------TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECT------------TTTTTCTTEEEEE
T ss_pred             ---------CCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEch------------hhhhCCccCCEEE
Confidence                     7889999999887 44444  467788999 999976  5666643            4678889999999


Q ss_pred             ccccccccccCCCcc-CCCCccEEee
Q 035891          221 LYALGNLRSIYPKAL-PFPHLKELEV  245 (309)
Q Consensus       221 L~~~~~L~~l~~~~~-~~~~L~~L~i  245 (309)
                      +.. ..++.++...+ .+++|+.++.
T Consensus       304 l~~-n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          304 ATG-DKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             ECS-SCCCEECTTTTCTTCCCCEEEC
T ss_pred             eCC-CccCccchhhhcCCcchhhhcc
Confidence            876 47888888666 7788888763

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.78  E-value=1.2e-08  Score=81.97  Aligned_cols=108  Identities=13%  Similarity=0.158  Sum_probs=76.2

Q ss_pred             CCcEEecCCCcCCCCCchh-hhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhh
Q 035891            6 NLKCLNLEYTYRIYKIPGQ-VISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRL   84 (309)
Q Consensus         6 ~Lr~L~l~~~~~l~~lp~~-~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~   84 (309)
                      +|++|++++| .++.++.. +++.+++|++|++++|.+.            ...+..+..+++|+.|+++.+        
T Consensus        30 ~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~------------~~~~~~~~~l~~L~~L~Ls~N--------   88 (192)
T 1w8a_A           30 HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLT------------GIEPNAFEGASHIQELQLGEN--------   88 (192)
T ss_dssp             TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCC------------CBCTTTTTTCTTCCEEECCSC--------
T ss_pred             CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCC------------CcCHhHcCCcccCCEEECCCC--------
Confidence            7999999999 89988763 5899999999999999996            334555666666666666433        


Q ss_pred             cCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeC
Q 035891           85 LTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWG  164 (309)
Q Consensus        85 ~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  164 (309)
                                            .+..++...+..+++|+.|++++ +.+..+......          .+++|+.|++++
T Consensus        89 ----------------------~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~----------~l~~L~~L~L~~  135 (192)
T 1w8a_A           89 ----------------------KIKEISNKMFLGLHQLKTLNLYD-NQISCVMPGSFE----------HLNSLTSLNLAS  135 (192)
T ss_dssp             ----------------------CCCEECSSSSTTCTTCCEEECCS-SCCCEECTTSST----------TCTTCCEEECTT
T ss_pred             ----------------------cCCccCHHHhcCCCCCCEEECCC-CcCCeeCHHHhh----------cCCCCCEEEeCC
Confidence                                  23333323456667777777777 566666554443          677788888877


Q ss_pred             cee
Q 035891          165 SKL  167 (309)
Q Consensus       165 c~l  167 (309)
                      |.+
T Consensus       136 N~l  138 (192)
T 1w8a_A          136 NPF  138 (192)
T ss_dssp             CCB
T ss_pred             CCc
Confidence            744

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.76  E-value=3e-07  Score=82.32  Aligned_cols=189  Identities=10%  Similarity=0.082  Sum_probs=117.9

Q ss_pred             CCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCc---------cccCC-cccchhhhhccCCCceEEEEE
Q 035891            6 NLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDS---------ILFGG-SLVLVEELLGLERLNVLTITL   75 (309)
Q Consensus         6 ~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~---------~l~~~-~~~~~~~l~~L~~L~~L~l~~   75 (309)
                      +|+.+.+..  .++.++..++..|.+|+.+++.++.+..++...         .+... .......+..+++|+.+.+..
T Consensus       158 ~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~  235 (401)
T 4fdw_A          158 TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPE  235 (401)
T ss_dssp             CCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCT
T ss_pred             CceEEEeCC--CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCC
Confidence            466666664  466666666677777777777666655443321         01100 012223466677788877742


Q ss_pred             ecchhhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCC-----ceEEcCccCcccccCCC
Q 035891           76 QSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDL-----EEMEIDYAGEEVKRIRE  150 (309)
Q Consensus        76 ~~~~~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l-----~~l~~~~~~~~~~~~~~  150 (309)
                       ....+....-..      ++|+.+.+.  +.+..++...+..+++|+.+.+.+. .+     ..++...+.        
T Consensus       236 -~l~~I~~~aF~~------~~L~~i~lp--~~i~~I~~~aF~~c~~L~~l~l~~~-~~~~~~~~~I~~~aF~--------  297 (401)
T 4fdw_A          236 -NVSTIGQEAFRE------SGITTVKLP--NGVTNIASRAFYYCPELAEVTTYGS-TFNDDPEAMIHPYCLE--------  297 (401)
T ss_dssp             -TCCEECTTTTTT------CCCSEEEEE--TTCCEECTTTTTTCTTCCEEEEESS-CCCCCTTCEECTTTTT--------
T ss_pred             -CccCcccccccc------CCccEEEeC--CCccEEChhHhhCCCCCCEEEeCCc-cccCCcccEECHHHhh--------
Confidence             222222111111      268888885  3577777678889999999999873 32     356666554        


Q ss_pred             cccccCcceEEEeCceecccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeecccccccc
Q 035891          151 THGFFSLHKVSIWGSKLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLR  228 (309)
Q Consensus       151 ~~~~~~L~~L~l~~c~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~  228 (309)
                        .+++|+.+.+... ++.++  .+..+++|+.+.+..  .++.+..            ..+..+ +|+.+.+.+. .+.
T Consensus       298 --~c~~L~~l~l~~~-i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~------------~aF~~~-~L~~l~l~~n-~~~  358 (401)
T 4fdw_A          298 --GCPKLARFEIPES-IRILGQGLLGGNRKVTQLTIPA--NVTQINF------------SAFNNT-GIKEVKVEGT-TPP  358 (401)
T ss_dssp             --TCTTCCEECCCTT-CCEECTTTTTTCCSCCEEEECT--TCCEECT------------TSSSSS-CCCEEEECCS-SCC
T ss_pred             --CCccCCeEEeCCc-eEEEhhhhhcCCCCccEEEECc--cccEEcH------------HhCCCC-CCCEEEEcCC-CCc
Confidence              7899999999855 33343  466789999999965  3655542            456777 9999999884 555


Q ss_pred             ccCCC
Q 035891          229 SIYPK  233 (309)
Q Consensus       229 ~l~~~  233 (309)
                      .+...
T Consensus       359 ~l~~~  363 (401)
T 4fdw_A          359 QVFEK  363 (401)
T ss_dssp             BCCCS
T ss_pred             ccccc
Confidence            55543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.75  E-value=1.5e-10  Score=93.51  Aligned_cols=80  Identities=23%  Similarity=0.179  Sum_probs=58.4

Q ss_pred             CCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhh
Q 035891            2 KYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAAL   81 (309)
Q Consensus         2 ~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l   81 (309)
                      +++.+|++|++++| .++.+| . +.++++|++|++++|.+.             .++..+..+++|+.|+++.+....+
T Consensus        45 ~~l~~L~~L~ls~n-~l~~l~-~-~~~l~~L~~L~l~~n~l~-------------~l~~~~~~~~~L~~L~L~~N~l~~l  108 (198)
T 1ds9_A           45 STLKACKHLALSTN-NIEKIS-S-LSGMENLRILSLGRNLIK-------------KIENLDAVADTLEELWISYNQIASL  108 (198)
T ss_dssp             HHTTTCSEEECSEE-EESCCC-C-HHHHTTCCEEEEEEEEEC-------------SCSSHHHHHHHCSEEEEEEEECCCH
T ss_pred             hcCCCCCEEECCCC-CCcccc-c-cccCCCCCEEECCCCCcc-------------cccchhhcCCcCCEEECcCCcCCcC
Confidence            45789999999999 899999 5 899999999999999885             3444555667788888877665554


Q ss_pred             hhhcCCcCccccCCCcCeEEEec
Q 035891           82 HRLLTSPSLQSIFSNTPSLCLRN  104 (309)
Q Consensus        82 ~~~~~~~~l~~~l~~L~~L~l~~  104 (309)
                      +.+..       +++|+.|++++
T Consensus       109 ~~~~~-------l~~L~~L~l~~  124 (198)
T 1ds9_A          109 SGIEK-------LVNLRVLYMSN  124 (198)
T ss_dssp             HHHHH-------HHHSSEEEESE
T ss_pred             Ccccc-------CCCCCEEECCC
Confidence            43222       11355566555

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.75  E-value=6.5e-09  Score=100.20  Aligned_cols=101  Identities=15%  Similarity=0.137  Sum_probs=55.4

Q ss_pred             CcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCceecccC-ccC
Q 035891           96 NTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVT-WLI  174 (309)
Q Consensus        96 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l~-~l~  174 (309)
                      +|+.|+++++. +..++ ..+..+++|+.|++++ +.+..++..+.           .+++|+.|++++|.+..+| .++
T Consensus       225 ~L~~L~Ls~n~-l~~l~-~~~~~l~~L~~L~Ls~-N~l~~lp~~~~-----------~l~~L~~L~Ls~N~l~~lp~~~~  290 (727)
T 4b8c_D          225 LWHALDLSNLQ-IFNIS-ANIFKYDFLTRLYLNG-NSLTELPAEIK-----------NLSNLRVLDLSHNRLTSLPAELG  290 (727)
T ss_dssp             CCCEEECTTSC-CSCCC-GGGGGCCSCSCCBCTT-SCCSCCCGGGG-----------GGTTCCEEECTTSCCSSCCSSGG
T ss_pred             CCcEEECCCCC-CCCCC-hhhcCCCCCCEEEeeC-CcCcccChhhh-----------CCCCCCEEeCcCCcCCccChhhc
Confidence            56666666643 33443 2334556666666665 34555543332           5666666666666555554 345


Q ss_pred             CCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeecccc
Q 035891          175 LAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYAL  224 (309)
Q Consensus       175 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~  224 (309)
                      .+++|++|+|++| .++.++             ..++.+++|++|+|+++
T Consensus       291 ~l~~L~~L~L~~N-~l~~lp-------------~~~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          291 SCFQLKYFYFFDN-MVTTLP-------------WEFGNLCNLQFLGVEGN  326 (727)
T ss_dssp             GGTTCSEEECCSS-CCCCCC-------------SSTTSCTTCCCEECTTS
T ss_pred             CCCCCCEEECCCC-CCCccC-------------hhhhcCCCccEEeCCCC
Confidence            5666666666655 344443             34556666666666664

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.61  E-value=7.4e-08  Score=75.65  Aligned_cols=105  Identities=13%  Similarity=0.159  Sum_probs=68.1

Q ss_pred             CCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhc
Q 035891            6 NLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLL   85 (309)
Q Consensus         6 ~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~   85 (309)
                      ..+.++++++ .++.+|.+ +  .++|++|++++|.+.            ...+..+..+++|+.|+++.+         
T Consensus        10 ~~~~l~~s~n-~l~~ip~~-~--~~~l~~L~L~~N~i~------------~~~~~~~~~l~~L~~L~Ls~N---------   64 (170)
T 3g39_A           10 SGTTVDCSGK-SLASVPTG-I--PTTTQVLYLYDNQIT------------KLEPGVFDRLTQLTRLDLDNN---------   64 (170)
T ss_dssp             ETTEEECTTS-CCSSCCSC-C--CTTCSEEECCSSCCC------------CCCTTTTTTCTTCSEEECCSS---------
T ss_pred             CCCEEEeCCC-CcCccCcc-C--CCCCcEEEcCCCcCC------------ccChhhhcCcccCCEEECCCC---------
Confidence            3578999999 89999986 4  388999999999986            333444555666666655433         


Q ss_pred             CCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCc
Q 035891           86 TSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGS  165 (309)
Q Consensus        86 ~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c  165 (309)
                                           .++.++...+..+++|+.|++++ +.+..++...+.          .+++|+.|++++|
T Consensus        65 ---------------------~l~~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~----------~l~~L~~L~L~~N  112 (170)
T 3g39_A           65 ---------------------QLTVLPAGVFDKLTQLTQLSLND-NQLKSIPRGAFD----------NLKSLTHIWLLNN  112 (170)
T ss_dssp             ---------------------CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTT----------TCTTCCEEECCSS
T ss_pred             ---------------------CcCccChhhccCCCCCCEEECCC-CccCEeCHHHhc----------CCCCCCEEEeCCC
Confidence                                 23334323345566677777766 456666554443          5667777777766


Q ss_pred             ee
Q 035891          166 KL  167 (309)
Q Consensus       166 ~l  167 (309)
                      .+
T Consensus       113 ~~  114 (170)
T 3g39_A          113 PW  114 (170)
T ss_dssp             CB
T ss_pred             CC
Confidence            33

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.60  E-value=8.3e-08  Score=75.69  Aligned_cols=105  Identities=15%  Similarity=0.187  Sum_probs=67.4

Q ss_pred             CcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhcC
Q 035891            7 LKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLLT   86 (309)
Q Consensus         7 Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~~   86 (309)
                      -+.++++++ .++.+|.+ +.  ++|++|++++|.+.            ...+..+..+++|+.|+++.+          
T Consensus        14 ~~~l~~~~n-~l~~iP~~-~~--~~L~~L~Ls~N~l~------------~~~~~~~~~l~~L~~L~Ls~N----------   67 (174)
T 2r9u_A           14 QTLVNCQNI-RLASVPAG-IP--TDKQRLWLNNNQIT------------KLEPGVFDHLVNLQQLYFNSN----------   67 (174)
T ss_dssp             SSEEECCSS-CCSSCCSC-CC--TTCSEEECCSSCCC------------CCCTTTTTTCTTCCEEECCSS----------
T ss_pred             CcEEEeCCC-CCCccCCC-cC--CCCcEEEeCCCCcc------------ccCHHHhcCCcCCCEEECCCC----------
Confidence            367899998 89999987 44  88999999999986            333444555666666655433          


Q ss_pred             CcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCce
Q 035891           87 SPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSK  166 (309)
Q Consensus        87 ~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  166 (309)
                                          .++.++...+..+++|+.|++++ +.+..++...+.          .+++|+.|++++|.
T Consensus        68 --------------------~l~~i~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~----------~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           68 --------------------KLTAIPTGVFDKLTQLTQLDLND-NHLKSIPRGAFD----------NLKSLTHIYLYNNP  116 (174)
T ss_dssp             --------------------CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTT----------TCTTCSEEECCSSC
T ss_pred             --------------------CCCccChhHhCCcchhhEEECCC-CccceeCHHHhc----------cccCCCEEEeCCCC
Confidence                                33334323345566666666666 456665554333          56677777777664


Q ss_pred             ec
Q 035891          167 LR  168 (309)
Q Consensus       167 l~  168 (309)
                      +.
T Consensus       117 ~~  118 (174)
T 2r9u_A          117 WD  118 (174)
T ss_dssp             BC
T ss_pred             cc
Confidence            43

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.58  E-value=2.1e-08  Score=78.61  Aligned_cols=90  Identities=13%  Similarity=0.134  Sum_probs=55.0

Q ss_pred             CcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCc-eeccc--Cc
Q 035891           96 NTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGS-KLRHV--TW  172 (309)
Q Consensus        96 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c-~l~~l--~~  172 (309)
                      .|++|++++|. +++.....+..+++|+.|++++|..+++-........      .+..++|++|+|++| ++++-  ..
T Consensus        62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~------~~~~~~L~~L~Ls~C~~ITD~Gl~~  134 (176)
T 3e4g_A           62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQL------ENLQKSMLEMEIISCGNVTDKGIIA  134 (176)
T ss_dssp             CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTC------HHHHHHCCEEEEESCTTCCHHHHHH
T ss_pred             eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhc------ccccCCCCEEEcCCCCcCCHHHHHH
Confidence            47778888776 5555555666777777777777776666554333200      001246777777777 55542  23


Q ss_pred             cCCCCCccEEEEEcCccccc
Q 035891          173 LILAPNLKHIEVYNCRYLDE  192 (309)
Q Consensus       173 l~~l~~L~~L~l~~c~~l~~  192 (309)
                      +..+++|++|+|++|+.+++
T Consensus       135 L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          135 LHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             GGGCTTCCEEEEESCTTCCC
T ss_pred             HhcCCCCCEEECCCCCCCCc
Confidence            45567777777777766654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.52  E-value=2.7e-07  Score=72.37  Aligned_cols=81  Identities=15%  Similarity=0.107  Sum_probs=41.0

Q ss_pred             ccCcceEEEeCceecccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccC
Q 035891          154 FFSLHKVSIWGSKLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIY  231 (309)
Q Consensus       154 ~~~L~~L~l~~c~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~  231 (309)
                      +++|+.|++++|+++.++  .+..+++|++|+++++ .++.++.            ..+..+++|++|+++++ .++.++
T Consensus        29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~------------~~f~~l~~L~~L~L~~N-~l~~~~   94 (170)
T 3g39_A           29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPA------------GVFDKLTQLTQLSLNDN-QLKSIP   94 (170)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCT------------TTTTTCTTCCEEECCSS-CCCCCC
T ss_pred             CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccCh------------hhccCCCCCCEEECCCC-ccCEeC
Confidence            345555555555444442  2445555666666554 3434432            22345556666666553 455555


Q ss_pred             CCc-cCCCCccEEeecCc
Q 035891          232 PKA-LPFPHLKELEVNLC  248 (309)
Q Consensus       232 ~~~-~~~~~L~~L~i~~C  248 (309)
                      ... ..+++|+.|++++.
T Consensus        95 ~~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           95 RGAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             TTTTTTCTTCCEEECCSS
T ss_pred             HHHhcCCCCCCEEEeCCC
Confidence            432 25555666665553

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.49  E-value=3.9e-07  Score=71.77  Aligned_cols=81  Identities=14%  Similarity=0.062  Sum_probs=44.0

Q ss_pred             ccCcceEEEeCceecccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccC
Q 035891          154 FFSLHKVSIWGSKLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIY  231 (309)
Q Consensus       154 ~~~L~~L~l~~c~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~  231 (309)
                      +++|+.|++++|++..++  .+..+++|++|+++++ .++.++.            ..+..+++|++|+++++ .++.++
T Consensus        32 ~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~------------~~~~~l~~L~~L~L~~N-~l~~l~   97 (174)
T 2r9u_A           32 PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPT------------GVFDKLTQLTQLDLNDN-HLKSIP   97 (174)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT------------TTTTTCTTCCEEECCSS-CCCCCC
T ss_pred             CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccCh------------hHhCCcchhhEEECCCC-ccceeC
Confidence            355666666666555443  2445566666666554 3444432            22345666666666653 555555


Q ss_pred             CC-ccCCCCccEEeecCc
Q 035891          232 PK-ALPFPHLKELEVNLC  248 (309)
Q Consensus       232 ~~-~~~~~~L~~L~i~~C  248 (309)
                      .. ...+++|+.|+++++
T Consensus        98 ~~~~~~l~~L~~L~L~~N  115 (174)
T 2r9u_A           98 RGAFDNLKSLTHIYLYNN  115 (174)
T ss_dssp             TTTTTTCTTCSEEECCSS
T ss_pred             HHHhccccCCCEEEeCCC
Confidence            54 235666666666654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.47  E-value=1.6e-07  Score=73.60  Aligned_cols=91  Identities=15%  Similarity=0.255  Sum_probs=46.2

Q ss_pred             CCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEec-ch--hhhhhcCCcCccccCCCcCeEEEecCC
Q 035891           30 KMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQS-FA--ALHRLLTSPSLQSIFSNTPSLCLRNCH  106 (309)
Q Consensus        30 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~-~~--~l~~~~~~~~l~~~l~~L~~L~l~~~~  106 (309)
                      .+|+.||+++|.++            ...+..+..+++|+.|++..+. .+  .+..+........   +|++|++++|.
T Consensus        61 ~~L~~LDLs~~~It------------d~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~---~L~~L~Ls~C~  125 (176)
T 3e4g_A           61 YKIQAIDATDSCIM------------SIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQK---SMLEMEIISCG  125 (176)
T ss_dssp             CCEEEEEEESCCCC------------GGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHH---HCCEEEEESCT
T ss_pred             ceEeEEeCcCCCcc------------HHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccC---CCCEEEcCCCC
Confidence            56888888888876            4555555556666666554332 11  2222222100000   35555555555


Q ss_pred             CCCeecccCccccccCCEEEEecCCCCce
Q 035891          107 SLSSLSVFTLASLRHLEALDMTNCKDLEE  135 (309)
Q Consensus       107 ~l~~~~~~~l~~l~~L~~L~l~~~~~l~~  135 (309)
                      .+++.....+..+++|+.|++++|..+++
T Consensus       126 ~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          126 NVTDKGIIALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             TCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred             cCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence            55554434444555555555555554443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.46  E-value=3.2e-09  Score=94.23  Aligned_cols=38  Identities=21%  Similarity=0.363  Sum_probs=22.4

Q ss_pred             CCCcEEecCCCcCCCCCchhhhc-----CCCCCceEEecccCCC
Q 035891            5 VNLKCLNLEYTYRIYKIPGQVIS-----NLKMLEALRMFKCGSS   43 (309)
Q Consensus         5 ~~Lr~L~l~~~~~l~~lp~~~i~-----~L~~L~~L~l~~~~~~   43 (309)
                      .+|++|++++| .++......+.     ..++|++|++++|.+.
T Consensus        72 ~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~  114 (372)
T 3un9_A           72 SSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASCQLD  114 (372)
T ss_dssp             TTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCC
T ss_pred             hhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCCCCC
Confidence            45777777777 66543322222     2257777777777764

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.26  E-value=9.9e-07  Score=77.21  Aligned_cols=64  Identities=20%  Similarity=0.241  Sum_probs=32.3

Q ss_pred             CCCCCCcEEecCC-CcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecc
Q 035891            2 KYLVNLKCLNLEY-TYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSF   78 (309)
Q Consensus         2 ~~L~~Lr~L~l~~-~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~   78 (309)
                      +.+.+|++|+|++ | .++.+|.+.++.|++|++|++++|.+.            ...+..+..|++|+.|+++.+..
T Consensus        28 ~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~------------~~~~~~~~~l~~L~~L~l~~N~l   92 (347)
T 2ifg_A           28 PGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLR------------FVAPDAFHFTPRLSRLNLSFNAL   92 (347)
T ss_dssp             CSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCC------------EECTTGGGSCSCCCEEECCSSCC
T ss_pred             CCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccc------------eeCHHHhcCCcCCCEEeCCCCcc
Confidence            3445555555554 4 555555434555555555555555553            22233345555555555544433

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.21  E-value=3e-06  Score=74.08  Aligned_cols=83  Identities=18%  Similarity=0.191  Sum_probs=57.3

Q ss_pred             CCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCceecccCc-
Q 035891           94 FSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVTW-  172 (309)
Q Consensus        94 l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l~~-  172 (309)
                      +++|+.|++++.+.++.++...+..+++|+.|++++ +.+..++...+.          .+++|+.|++++|++..+|. 
T Consensus        30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~----------~l~~L~~L~l~~N~l~~~~~~   98 (347)
T 2ifg_A           30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK-SGLRFVAPDAFH----------FTPRLSRLNLSFNALESLSWK   98 (347)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCS-SCCCEECTTGGG----------SCSCCCEEECCSSCCSCCCST
T ss_pred             CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCC-CccceeCHHHhc----------CCcCCCEEeCCCCccceeCHH
Confidence            336888888765667777655677778888888887 567777765554          67888888888887666652 


Q ss_pred             -cCCCCCccEEEEEcCc
Q 035891          173 -LILAPNLKHIEVYNCR  188 (309)
Q Consensus       173 -l~~l~~L~~L~l~~c~  188 (309)
                       +..++ |+.|++.++.
T Consensus        99 ~~~~~~-L~~l~l~~N~  114 (347)
T 2ifg_A           99 TVQGLS-LQELVLSGNP  114 (347)
T ss_dssp             TTCSCC-CCEEECCSSC
T ss_pred             HcccCC-ceEEEeeCCC
Confidence             22333 7888877653

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.13  E-value=8.6e-07  Score=78.15  Aligned_cols=131  Identities=15%  Similarity=0.165  Sum_probs=74.4

Q ss_pred             CCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCc--------
Q 035891           94 FSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGS--------  165 (309)
Q Consensus        94 l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c--------  165 (309)
                      +++|+.|.+.++..+ .+  ..+. +++|+.|++..|. +..-.......        ..+|+|+.|+++.+        
T Consensus       171 ~P~L~~L~L~g~~~l-~l--~~~~-~~~L~~L~L~~~~-l~~~~l~~l~~--------~~lp~L~~L~L~~~~~~~~~~~  237 (362)
T 2ra8_A          171 MPLLNNLKIKGTNNL-SI--GKKP-RPNLKSLEIISGG-LPDSVVEDILG--------SDLPNLEKLVLYVGVEDYGFDG  237 (362)
T ss_dssp             CTTCCEEEEECCBTC-BC--CSCB-CTTCSEEEEECSB-CCHHHHHHHHH--------SBCTTCCEEEEECBCGGGTCCS
T ss_pred             CCCCcEEEEeCCCCc-ee--cccc-CCCCcEEEEecCC-CChHHHHHHHH--------ccCCCCcEEEEeccccccccch
Confidence            457888888776332 12  2232 6788888887652 32211111100        04788888888632        


Q ss_pred             eecccC---ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccc-----cCCCccCC
Q 035891          166 KLRHVT---WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRS-----IYPKALPF  237 (309)
Q Consensus       166 ~l~~l~---~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~-----l~~~~~~~  237 (309)
                      .+..+.   ....+|+|++|.+.+|..........          .....+|+|++|+|+.+ .++.     +......+
T Consensus       238 ~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~l----------a~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l  306 (362)
T 2ra8_A          238 DMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMF----------LESDILPQLETMDISAG-VLTDEGARLLLDHVDKI  306 (362)
T ss_dssp             CGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHH----------HHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHH
T ss_pred             hHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHH----------HhCccCCCCCEEECCCC-CCChHHHHHHHhhcccC
Confidence            122221   12357899999998875432221000          11245789999999764 5654     33333467


Q ss_pred             CCccEEeecCc
Q 035891          238 PHLKELEVNLC  248 (309)
Q Consensus       238 ~~L~~L~i~~C  248 (309)
                      ++|+.|++++|
T Consensus       307 ~~L~~L~L~~n  317 (362)
T 2ra8_A          307 KHLKFINMKYN  317 (362)
T ss_dssp             TTCSEEECCSB
T ss_pred             CcceEEECCCC
Confidence            88999999887

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.08  E-value=8.4e-05  Score=66.15  Aligned_cols=120  Identities=13%  Similarity=0.106  Sum_probs=57.7

Q ss_pred             CcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCceecccCccCC
Q 035891           96 NTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVTWLIL  175 (309)
Q Consensus        96 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l~~l~~  175 (309)
                      +|+.+.+..  ....+....+..+..|+.+.+..  .+..+....+.          .+..++.+......+... ....
T Consensus       231 ~l~~i~ip~--~~~~i~~~~f~~~~~l~~~~~~~--~~~~i~~~~F~----------~~~~l~~~~~~~~~i~~~-~F~~  295 (394)
T 4fs7_A          231 GVKNIIIPD--SFTELGKSVFYGCTDLESISIQN--NKLRIGGSLFY----------NCSGLKKVIYGSVIVPEK-TFYG  295 (394)
T ss_dssp             CCCEEEECT--TCCEECSSTTTTCSSCCEEEECC--TTCEECSCTTT----------TCTTCCEEEECSSEECTT-TTTT
T ss_pred             CCceEEECC--CceecccccccccccceeEEcCC--Ccceeeccccc----------cccccceeccCceeeccc-cccc
Confidence            466666543  33444434555666777776654  34444443332          445555554443322111 2334


Q ss_pred             CCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCcc-CCCCccEEeec
Q 035891          176 APNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKAL-PFPHLKELEVN  246 (309)
Q Consensus       176 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~-~~~~L~~L~i~  246 (309)
                      +.+|+.+.+.+  .++.+..            ..+..+++|+.+.|..  .++.+....+ .+.+|+.+.+.
T Consensus       296 ~~~L~~i~l~~--~i~~I~~------------~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp  351 (394)
T 4fs7_A          296 CSSLTEVKLLD--SVKFIGE------------EAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFP  351 (394)
T ss_dssp             CTTCCEEEECT--TCCEECT------------TTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCC
T ss_pred             ccccccccccc--ccceech------------hhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEEC
Confidence            55566666543  2333321            2344555666666643  3555554444 44555555543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.02  E-value=1.1e-07  Score=84.26  Aligned_cols=14  Identities=14%  Similarity=0.138  Sum_probs=9.0

Q ss_pred             CCCceEEecccCCC
Q 035891           30 KMLEALRMFKCGSS   43 (309)
Q Consensus        30 ~~L~~L~l~~~~~~   43 (309)
                      ++|++|++++|.+.
T Consensus        72 ~~L~~L~Ls~n~l~   85 (372)
T 3un9_A           72 SSLRQLNLAGVRMT   85 (372)
T ss_dssp             TTCCEEECTTSCCC
T ss_pred             hhCCEEEecCCCCC
Confidence            45666777666664

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.85  E-value=1e-05  Score=71.22  Aligned_cols=156  Identities=13%  Similarity=0.156  Sum_probs=94.6

Q ss_pred             CCCCCcEEecCCCcCCC----------CCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEE
Q 035891            3 YLVNLKCLNLEYTYRIY----------KIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLT   72 (309)
Q Consensus         3 ~L~~Lr~L~l~~~~~l~----------~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~   72 (309)
                      ++++||.|.+.+. ...          .++. ++..+++|+.|.+++|...             .. ..+ .+++|+.|+
T Consensus       137 ~l~~L~~L~l~~~-~~e~~~is~~~~~~L~~-ll~~~P~L~~L~L~g~~~l-------------~l-~~~-~~~~L~~L~  199 (362)
T 2ra8_A          137 KFAHFEGLFWGDI-DFEEQEISWIEQVDLSP-VLDAMPLLNNLKIKGTNNL-------------SI-GKK-PRPNLKSLE  199 (362)
T ss_dssp             HHTTCSEEEECCC-CTTTCCGGGCBCCBCHH-HHHTCTTCCEEEEECCBTC-------------BC-CSC-BCTTCSEEE
T ss_pred             hcchhhheeecCc-chhhcccccccccCHHH-HHhcCCCCcEEEEeCCCCc-------------ee-ccc-cCCCCcEEE
Confidence            4678999988654 221          2444 4788999999999887422             11 113 388999999


Q ss_pred             EEEecch--hhhhhcCCcCccccCCCcCeEEEecCCC-------CCeec-ccCccccccCCEEEEecCCCCceEEcCccC
Q 035891           73 ITLQSFA--ALHRLLTSPSLQSIFSNTPSLCLRNCHS-------LSSLS-VFTLASLRHLEALDMTNCKDLEEMEIDYAG  142 (309)
Q Consensus        73 l~~~~~~--~l~~~~~~~~l~~~l~~L~~L~l~~~~~-------l~~~~-~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~  142 (309)
                      +..+...  .+..+... .    +++|+.|+++.+.+       +..+. ......+++|+.|++.+|. +.........
T Consensus       200 L~~~~l~~~~l~~l~~~-~----lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~-i~~~~~~~la  273 (362)
T 2ra8_A          200 IISGGLPDSVVEDILGS-D----LPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE-EQNVVVEMFL  273 (362)
T ss_dssp             EECSBCCHHHHHHHHHS-B----CTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT-THHHHHHHHH
T ss_pred             EecCCCChHHHHHHHHc-c----CCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC-CchHHHHHHH
Confidence            9755433  22233211 1    44799999964211       11111 0111357899999999864 3221111100


Q ss_pred             cccccCCCcccccCcceEEEeCceecc-----cC-ccCCCCCccEEEEEcCc
Q 035891          143 EEVKRIRETHGFFSLHKVSIWGSKLRH-----VT-WLILAPNLKHIEVYNCR  188 (309)
Q Consensus       143 ~~~~~~~~~~~~~~L~~L~l~~c~l~~-----l~-~l~~l~~L~~L~l~~c~  188 (309)
                            ... .+++|++|+++.|.+.+     ++ .+..+++|+.|++++|.
T Consensus       274 ------~a~-~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          274 ------ESD-ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             ------HCS-SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             ------hCc-cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence                  001 57899999999885554     22 23567999999998874

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.58  E-value=0.0014  Score=58.10  Aligned_cols=38  Identities=16%  Similarity=0.132  Sum_probs=26.6

Q ss_pred             CCCCCCCcEEecCCC--cCCCCCchhhhcCCCCCceEEec
Q 035891            1 LKYLVNLKCLNLEYT--YRIYKIPGQVISNLKMLEALRMF   38 (309)
Q Consensus         1 l~~L~~Lr~L~l~~~--~~l~~lp~~~i~~L~~L~~L~l~   38 (309)
                      |.++.+|+.+.+..+  ..++.|+..++..+.+|+.+.+.
T Consensus        83 F~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~  122 (394)
T 4gt6_A           83 FYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPIL  122 (394)
T ss_dssp             TTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGG
T ss_pred             hhCCccCceEeecCCCCCeeeEechhhchhcccceeeccC
Confidence            456788888888654  23667777777777777776654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.49  E-value=0.002  Score=57.15  Aligned_cols=34  Identities=12%  Similarity=0.135  Sum_probs=28.7

Q ss_pred             CCcEEecCCCcCCCCCchhhhcCCCCCceEEecccC
Q 035891            6 NLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCG   41 (309)
Q Consensus         6 ~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~   41 (309)
                      .|+.+.+..  .++.|...++.++.+|+.+.+..+.
T Consensus        65 ~L~sI~iP~--svt~Ig~~AF~~C~~L~~i~~~~n~   98 (394)
T 4gt6_A           65 VLTSVQIPD--TVTEIGSNAFYNCTSLKRVTIQDNK   98 (394)
T ss_dssp             CCCEEEECT--TCCEECTTTTTTCTTCCEEEEGGGC
T ss_pred             cCEEEEECC--CeeEEhHHHhhCCccCceEeecCCC
Confidence            488899986  4889988889999999999987653

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.48  E-value=0.0025  Score=56.55  Aligned_cols=204  Identities=15%  Similarity=0.134  Sum_probs=110.0

Q ss_pred             CCCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCc----------cccCCcccchhhhhccCCCce
Q 035891            1 LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDS----------ILFGGSLVLVEELLGLERLNV   70 (309)
Q Consensus         1 l~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~----------~l~~~~~~~~~~l~~L~~L~~   70 (309)
                      |.++.+|+.+.+..+  +..++.+++..+.+|+.+.+..+ +..++...          .+...............+|+.
T Consensus       158 F~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~  234 (394)
T 4fs7_A          158 FATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKN  234 (394)
T ss_dssp             TTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCE
T ss_pred             hcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCce
Confidence            456788999999864  67788888889999999988654 22111110          000000111111222345555


Q ss_pred             EEEEEecchhhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCC
Q 035891           71 LTITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRE  150 (309)
Q Consensus        71 L~l~~~~~~~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~  150 (309)
                      +.+. .....+...    .+. .++.++.+.+..  ....+....+..+..++.+.....    .++...+.        
T Consensus       235 i~ip-~~~~~i~~~----~f~-~~~~l~~~~~~~--~~~~i~~~~F~~~~~l~~~~~~~~----~i~~~~F~--------  294 (394)
T 4fs7_A          235 IIIP-DSFTELGKS----VFY-GCTDLESISIQN--NKLRIGGSLFYNCSGLKKVIYGSV----IVPEKTFY--------  294 (394)
T ss_dssp             EEEC-TTCCEECSS----TTT-TCSSCCEEEECC--TTCEECSCTTTTCTTCCEEEECSS----EECTTTTT--------
T ss_pred             EEEC-CCceecccc----ccc-ccccceeEEcCC--CcceeeccccccccccceeccCce----eecccccc--------
Confidence            5442 111111110    011 134677777764  234454445666666776655431    23333332        


Q ss_pred             cccccCcceEEEeCceecccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeecccccccc
Q 035891          151 THGFFSLHKVSIWGSKLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLR  228 (309)
Q Consensus       151 ~~~~~~L~~L~l~~c~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~  228 (309)
                        .+.+|+.+.+... ++.++  .+..+++|+.+++.+  .++.+..            ..+..+.+|+.+.+..  .++
T Consensus       295 --~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~------------~aF~~c~~L~~i~lp~--~l~  355 (394)
T 4fs7_A          295 --GCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY--LVEEIGK------------RSFRGCTSLSNINFPL--SLR  355 (394)
T ss_dssp             --TCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT--TCCEECT------------TTTTTCTTCCEECCCT--TCC
T ss_pred             --ccccccccccccc-cceechhhhcCCCCCCEEEeCC--cccEEhH------------HhccCCCCCCEEEECc--ccc
Confidence              5677777777655 22222  345667788777743  3444432            3566677788777764  366


Q ss_pred             ccCCCcc-CCCCccEEeec
Q 035891          229 SIYPKAL-PFPHLKELEVN  246 (309)
Q Consensus       229 ~l~~~~~-~~~~L~~L~i~  246 (309)
                      .+....+ .|++|+.+++.
T Consensus       356 ~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          356 KIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             EECTTTBTTCTTCCEEEEE
T ss_pred             EehHHHhhCCCCCCEEEEC
Confidence            6766555 66777777664

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.37  E-value=0.02  Score=50.14  Aligned_cols=33  Identities=6%  Similarity=0.012  Sum_probs=23.6

Q ss_pred             CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecc
Q 035891            5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFK   39 (309)
Q Consensus         5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~   39 (309)
                      .+|+.+.+..  .++.|+..++.++.+|+.+.+..
T Consensus        46 ~~i~~v~ip~--~vt~Ig~~aF~~C~~L~~I~lp~   78 (379)
T 4h09_A           46 DRISEVRVNS--GITSIGEANFNSCYNMTKVTVAS   78 (379)
T ss_dssp             GGCSEEEECT--TEEEECTTTTTTCTTCCEEEECT
T ss_pred             cCCEEEEeCC--CccChHHHHhhCCCCCCEEEeCC
Confidence            4566666665  47777777778888888888754

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.26  E-value=6.7e-05  Score=59.44  Aligned_cols=122  Identities=15%  Similarity=0.017  Sum_probs=58.1

Q ss_pred             hcCCCCCceEEeccc-CCCCccCCccccCCcccchhhhhccCCCceEEEEEecchh--hhhhcCCcCccccCCCcCeEEE
Q 035891           26 ISNLKMLEALRMFKC-GSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAA--LHRLLTSPSLQSIFSNTPSLCL  102 (309)
Q Consensus        26 i~~L~~L~~L~l~~~-~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~--l~~~~~~~~l~~~l~~L~~L~l  102 (309)
                      +...++|++|++++| .+..        .+...+...+...++|+.|+++.+....  ...+...  +.. .++|++|++
T Consensus        32 l~~~~~L~~L~L~~n~~i~~--------~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~--L~~-n~~L~~L~L  100 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPV--------PTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEM--LKV-NNTLKSLNV  100 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCH--------HHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHH--HHH-CSSCCEEEC
T ss_pred             HhcCCCCCEEEecCCCCCCH--------HHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHH--HHh-CCCcCEEEC
Confidence            556667777777766 5541        0011233445556667777766554432  1111110  000 125777777


Q ss_pred             ecCCCCCeecc----cCccccccCCEEEE--ecCCCCceEEcCccCcccccCCCcccccCcceEEEeCce
Q 035891          103 RNCHSLSSLSV----FTLASLRHLEALDM--TNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSK  166 (309)
Q Consensus       103 ~~~~~l~~~~~----~~l~~l~~L~~L~l--~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  166 (309)
                      +++. +.....    ..+...++|+.|++  .+ +.+..-+......   .+   ...++|++|++++|.
T Consensus       101 ~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~---~L---~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          101 ESNF-ISGSGILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIAN---ML---EKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             CSSC-CCHHHHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHH---HH---HHCSSCCEEECCCSS
T ss_pred             cCCc-CCHHHHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHH---HH---HhCCCcCEEeccCCC
Confidence            7643 333211    23455567777777  44 4444332211110   00   034677777777773

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.05  E-value=5.6e-05  Score=63.43  Aligned_cols=85  Identities=13%  Similarity=0.071  Sum_probs=46.4

Q ss_pred             cCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhcCCcCccccCCCcCeEEEecCC
Q 035891           27 SNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCH  106 (309)
Q Consensus        27 ~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~~~~~l~~~l~~L~~L~l~~~~  106 (309)
                      .++++|++|++++|.+..+          ..++..++.+++|+.|+++.+....+.++.....    + +|+.|++.++.
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l----------~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~----l-~L~~L~L~~Np  231 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRL----------DDMSSIVQKAPNLKILNLSGNELKSERELDKIKG----L-KLEELWLDGNS  231 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCC----------GGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTT----S-CCSEEECTTST
T ss_pred             hhCCCCCEEECCCCCCCCC----------ccchhHHhhCCCCCEEECCCCccCCchhhhhccc----C-CcceEEccCCc
Confidence            4567777777777777522          2333445567777777776655554444333221    1 47777777654


Q ss_pred             CCCeecc------cCccccccCCEEE
Q 035891          107 SLSSLSV------FTLASLRHLEALD  126 (309)
Q Consensus       107 ~l~~~~~------~~l~~l~~L~~L~  126 (309)
                      -...++.      ..+..+++|+.|+
T Consensus       232 l~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          232 LCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             TGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             CccccCcchhHHHHHHHHCcccCeEC
Confidence            3332221      1244566666554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.01  E-value=0.0096  Score=52.28  Aligned_cols=120  Identities=13%  Similarity=0.228  Sum_probs=62.5

Q ss_pred             CcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCceecccC--cc
Q 035891           96 NTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVT--WL  173 (309)
Q Consensus        96 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l~--~l  173 (309)
                      +++.+.+..  .+..+....+..+.+|+.+.+..  +++.++...+.          .+.+|+.+.+... ++.++  .+
T Consensus       218 ~l~~i~~~~--~~~~i~~~~f~~~~~L~~i~lp~--~v~~I~~~aF~----------~~~~l~~i~l~~~-i~~i~~~aF  282 (379)
T 4h09_A          218 NLKKITITS--GVTTLGDGAFYGMKALDEIAIPK--NVTSIGSFLLQ----------NCTALKTLNFYAK-VKTVPYLLC  282 (379)
T ss_dssp             SCSEEECCT--TCCEECTTTTTTCSSCCEEEECT--TCCEECTTTTT----------TCTTCCEEEECCC-CSEECTTTT
T ss_pred             ccceeeecc--ceeEEccccccCCccceEEEcCC--CccEeCccccc----------eeehhcccccccc-ceecccccc
Confidence            344444432  34444434455566677666653  36666554443          5666777766544 22222  34


Q ss_pred             CCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCcc-CCCCccEEee
Q 035891          174 ILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKAL-PFPHLKELEV  245 (309)
Q Consensus       174 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~-~~~~L~~L~i  245 (309)
                      ..+++|+.+.+.++ .++.+..            ..+..+++|+.+.|..  .++.+....+ .+.+|+++.+
T Consensus       283 ~~c~~L~~i~l~~~-~i~~I~~------------~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          283 SGCSNLTKVVMDNS-AIETLEP------------RVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             TTCTTCCEEEECCT-TCCEECT------------TTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCC
T ss_pred             cccccccccccccc-ccceehh------------hhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEE
Confidence            55677777777542 3444422            3455667777777653  3555554443 3444444433

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.82  E-value=0.00085  Score=56.18  Aligned_cols=64  Identities=20%  Similarity=0.336  Sum_probs=48.6

Q ss_pred             CCCCCcEEecCCCcCCCCCch--hhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecch
Q 035891            3 YLVNLKCLNLEYTYRIYKIPG--QVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFA   79 (309)
Q Consensus         3 ~L~~Lr~L~l~~~~~l~~lp~--~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~   79 (309)
                      ++.+|+.|+|++| .+..++.  +.+..+++|++|++++|.+..+           ..+..+..+ +|+.|++.++...
T Consensus       168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-----------~~l~~l~~l-~L~~L~L~~Npl~  233 (267)
T 3rw6_A          168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSE-----------RELDKIKGL-KLEELWLDGNSLC  233 (267)
T ss_dssp             HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-----------GGGGGGTTS-CCSEEECTTSTTG
T ss_pred             hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCc-----------hhhhhcccC-CcceEEccCCcCc
Confidence            4789999999999 8887653  2367999999999999999621           123344444 9999999876654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.32  E-value=0.00068  Score=53.52  Aligned_cols=116  Identities=16%  Similarity=0.124  Sum_probs=75.3

Q ss_pred             CCCCCCcEEecCCCcCCCC-----CchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEe
Q 035891            2 KYLVNLKCLNLEYTYRIYK-----IPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQ   76 (309)
Q Consensus         2 ~~L~~Lr~L~l~~~~~l~~-----lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~   76 (309)
                      ....+|++|++++|..+..     +... +...++|++|++++|.+..        .+...+...+...++|++|+++.+
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~-L~~~~~L~~L~Ls~n~i~~--------~g~~~l~~~L~~n~~L~~L~L~~N  103 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEA-LKTNTYVKKFSIVGTRSND--------PVAFALAEMLKVNNTLKSLNVESN  103 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHH-HTTCCSCCEEECTTSCCCH--------HHHHHHHHHHHHCSSCCEEECCSS
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHH-HHhCCCcCEEECcCCCCCh--------HHHHHHHHHHHhCCCcCEEECcCC
Confidence            4567899999998734543     4443 6778999999999999861        011224455677789999999877


Q ss_pred             cchh--hhhhcCCcCccccCCCcCeEEE--ecCCCCCeeccc----CccccccCCEEEEecC
Q 035891           77 SFAA--LHRLLTSPSLQSIFSNTPSLCL--RNCHSLSSLSVF----TLASLRHLEALDMTNC  130 (309)
Q Consensus        77 ~~~~--l~~~~~~~~l~~~l~~L~~L~l--~~~~~l~~~~~~----~l~~l~~L~~L~l~~~  130 (309)
                      ....  ...+...  +.. .+.|+.|++  .+ +.+......    .+...++|+.|+++++
T Consensus       104 ~i~~~g~~~l~~~--L~~-n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A          104 FISGSGILALVEA--LQS-NTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             CCCHHHHHHHHHG--GGG-CSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             cCCHHHHHHHHHH--HHh-CCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence            6653  2222211  111 236999999  54 444443211    3455578999999874

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.56  E-value=0.011  Score=43.54  Aligned_cols=53  Identities=9%  Similarity=-0.013  Sum_probs=30.7

Q ss_pred             EEecCCCcCCC--CCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEec
Q 035891            9 CLNLEYTYRIY--KIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQS   77 (309)
Q Consensus         9 ~L~l~~~~~l~--~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~   77 (309)
                      .++-++. .++  .+|.+ +  -.+|++|++++|.+..+            -.+.+..+++|+.|++.++.
T Consensus        12 ~v~Cs~~-~L~~~~vP~~-l--p~~l~~L~Ls~N~l~~l------------~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           12 LVDCGRR-GLTWASLPTA-F--PVDTTELVLTGNNLTAL------------PPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             EEECCSS-CCCTTTSCSC-C--CTTCSEEECTTSCCSSC------------CTTTGGGCTTCCEEECCSSC
T ss_pred             EEEeCCC-CCccccCCCC-C--CcCCCEEECCCCcCCcc------------ChhhhhhccccCEEEecCCC
Confidence            4555665 565  66654 2  23577777777777522            22335566677777776553

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=91.51  E-value=0.18  Score=36.97  Aligned_cols=37  Identities=14%  Similarity=0.101  Sum_probs=33.9

Q ss_pred             CCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCC
Q 035891            6 NLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSS   43 (309)
Q Consensus         6 ~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~   43 (309)
                      +|++|+|++| .++.+|.+++..+++|++|++.+|...
T Consensus        32 ~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           32 DTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CCCEEECCCC-cCCccChhhhhhccccCEEEecCCCee
Confidence            6999999999 999999998899999999999988763

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=86.82  E-value=0.58  Score=36.90  Aligned_cols=66  Identities=21%  Similarity=0.232  Sum_probs=32.5

Q ss_pred             CCCcEEecCCCcCCCC-----CchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecch
Q 035891            5 VNLKCLNLEYTYRIYK-----IPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFA   79 (309)
Q Consensus         5 ~~Lr~L~l~~~~~l~~-----lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~   79 (309)
                      ..|+.|+|+++..+..     +-.. +..=+.|+.|++++|.+.+        .+...+.+.+..-+.|+.|++..+...
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~a-L~~N~~L~~L~L~~n~igd--------~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEA-ACNSKHIEKFSLANTAISD--------SEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHH-HTTCSCCCEEECTTSCCBH--------HHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHH-HhhCCCcCEEEccCCCCCh--------HHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            4566666665323332     2222 4444566677776666641        011223333444566666666554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	309
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.7
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.64
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.63
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.62
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.62
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.61
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.59
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.59
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.58
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.57
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.54
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.54
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.54
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.53
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.53
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.52
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.51
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.49
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.49
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.41
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.38
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.12
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.08
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.07
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.04
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.04
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.01
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.86
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.81
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.77
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.38
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.37
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.24
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.89
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.36
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.03
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.26
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	95.52
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.45
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.51
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	92.33
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	84.24

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=8.8e-17  Score=134.70  Aligned_cols=196  Identities=19%  Similarity=0.189  Sum_probs=150.8

Q ss_pred             CCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhh
Q 035891            4 LVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHR   83 (309)
Q Consensus         4 L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~   83 (309)
                      ...+...+-+++ .++.+|.+ +.  +++++|++++|.+.            ......+.++++|+.|+++.+..+.++.
T Consensus         9 ~~~~~~v~C~~~-~L~~iP~~-lp--~~l~~L~Ls~N~i~------------~l~~~~f~~l~~L~~L~L~~N~l~~l~~   72 (266)
T d1p9ag_           9 VASHLEVNCDKR-NLTALPPD-LP--KDTTILHLSENLLY------------TFSLATLMPYTRLTQLNLDRAELTKLQV   72 (266)
T ss_dssp             STTCCEEECTTS-CCSSCCSC-CC--TTCCEEECTTSCCS------------EEEGGGGTTCTTCCEEECTTSCCCEEEC
T ss_pred             cCCCeEEEccCC-CCCeeCcC-cC--cCCCEEECcCCcCC------------CcCHHHhhcccccccccccccccccccc
Confidence            445666788888 89999987 54  68999999999996            3344668899999999997666554443


Q ss_pred             hcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEe
Q 035891           84 LLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIW  163 (309)
Q Consensus        84 ~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~  163 (309)
                      .   ..    +++|+.|+++++ .+...+ ..+..+++|+.|+++++ .+..++.....          .+.+++.|++.
T Consensus        73 ~---~~----l~~L~~L~Ls~N-~l~~~~-~~~~~l~~L~~L~l~~~-~~~~~~~~~~~----------~l~~l~~L~l~  132 (266)
T d1p9ag_          73 D---GT----LPVLGTLDLSHN-QLQSLP-LLGQTLPALTVLDVSFN-RLTSLPLGALR----------GLGELQELYLK  132 (266)
T ss_dssp             C---SC----CTTCCEEECCSS-CCSSCC-CCTTTCTTCCEEECCSS-CCCCCCSSTTT----------TCTTCCEEECT
T ss_pred             c---cc----cccccccccccc-cccccc-ccccccccccccccccc-ccceeeccccc----------ccccccccccc
Confidence            2   22    447999999985 455554 45678899999999984 56666555544          78899999999


Q ss_pred             CceecccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCccCCCCcc
Q 035891          164 GSKLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALPFPHLK  241 (309)
Q Consensus       164 ~c~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~  241 (309)
                      +|.+..++  ....+++|+.+++++| .++.++.            ..+..+++|++|+|+++ ++++++.+.+.+++|+
T Consensus       133 ~n~l~~l~~~~~~~l~~l~~l~l~~N-~l~~~~~------------~~~~~l~~L~~L~Ls~N-~L~~lp~~~~~~~~L~  198 (266)
T d1p9ag_         133 GNELKTLPPGLLTPTPKLEKLSLANN-NLTELPA------------GLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLP  198 (266)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECTTS-CCSCCCT------------TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCS
T ss_pred             ccccceeccccccccccchhcccccc-cccccCc------------cccccccccceeecccC-CCcccChhHCCCCCCC
Confidence            99777765  3556899999999887 5656653            45778999999999995 7999999888999999


Q ss_pred             EEeecCcc
Q 035891          242 ELEVNLCP  249 (309)
Q Consensus       242 ~L~i~~C~  249 (309)
                      .|++.+.|
T Consensus       199 ~L~L~~Np  206 (266)
T d1p9ag_         199 FAFLHGNP  206 (266)
T ss_dssp             EEECCSCC
T ss_pred             EEEecCCC
Confidence            99998753

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=6.9e-16  Score=126.03  Aligned_cols=188  Identities=16%  Similarity=0.189  Sum_probs=135.4

Q ss_pred             CCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhh
Q 035891            3 YLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALH   82 (309)
Q Consensus         3 ~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~   82 (309)
                      +|.+|++|++.+| .++.++ + +.+|++|++|++++|.+..              ...+..+++|+.+++..+..+.++
T Consensus        39 ~l~~L~~L~l~~~-~i~~l~-~-l~~l~~L~~L~ls~n~i~~--------------~~~l~~l~~l~~l~~~~n~~~~i~  101 (227)
T d1h6ua2          39 DLDGITTLSAFGT-GVTTIE-G-VQYLNNLIGLELKDNQITD--------------LAPLKNLTKITELELSGNPLKNVS  101 (227)
T ss_dssp             HHHTCCEEECTTS-CCCCCT-T-GGGCTTCCEEECCSSCCCC--------------CGGGTTCCSCCEEECCSCCCSCCG
T ss_pred             HcCCcCEEECCCC-CCCcch-h-HhcCCCCcEeecCCceeec--------------cccccccccccccccccccccccc
Confidence            4678899999999 888886 4 8899999999999988851              234788889999888766655555


Q ss_pred             hhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEE
Q 035891           83 RLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSI  162 (309)
Q Consensus        83 ~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l  162 (309)
                      .+..       +++|+.+.++++.... .  ..+...+.++.+.+..+ .+.... ...           ..++|+.|.+
T Consensus       102 ~l~~-------l~~L~~l~l~~~~~~~-~--~~~~~~~~~~~l~~~~~-~~~~~~-~~~-----------~~~~L~~L~l  158 (227)
T d1h6ua2         102 AIAG-------LQSIKTLDLTSTQITD-V--TPLAGLSNLQVLYLDLN-QITNIS-PLA-----------GLTNLQYLSI  158 (227)
T ss_dssp             GGTT-------CTTCCEEECTTSCCCC-C--GGGTTCTTCCEEECCSS-CCCCCG-GGG-----------GCTTCCEEEC
T ss_pred             cccc-------cccccccccccccccc-c--chhccccchhhhhchhh-hhchhh-hhc-----------cccccccccc
Confidence            4433       3368888888765432 2  23455677888887764 332221 111           6788999999


Q ss_pred             eCceecccCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCccCCCCccE
Q 035891          163 WGSKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALPFPHLKE  242 (309)
Q Consensus       163 ~~c~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~  242 (309)
                      .+|.+...+.++.+++|++|++++| .++++.              .+..+++|++|++++| ++++++. ...+++|+.
T Consensus       159 ~~n~~~~~~~l~~l~~L~~L~Ls~n-~l~~l~--------------~l~~l~~L~~L~Ls~N-~lt~i~~-l~~l~~L~~  221 (227)
T d1h6ua2         159 GNAQVSDLTPLANLSKLTTLKADDN-KISDIS--------------PLASLPNLIEVHLKNN-QISDVSP-LANTSNLFI  221 (227)
T ss_dssp             CSSCCCCCGGGTTCTTCCEEECCSS-CCCCCG--------------GGGGCTTCCEEECTTS-CCCBCGG-GTTCTTCCE
T ss_pred             cccccccchhhcccccceecccCCC-ccCCCh--------------hhcCCCCCCEEECcCC-cCCCCcc-cccCCCCCE
Confidence            8886666656788899999999887 566653              4678899999999987 6887763 447888888


Q ss_pred             EeecC
Q 035891          243 LEVNL  247 (309)
Q Consensus       243 L~i~~  247 (309)
                      |++++
T Consensus       222 L~lsn  226 (227)
T d1h6ua2         222 VTLTN  226 (227)
T ss_dssp             EEEEE
T ss_pred             EEeeC
Confidence            88763

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=2.3e-15  Score=132.04  Aligned_cols=224  Identities=18%  Similarity=0.257  Sum_probs=123.2

Q ss_pred             CCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCc--------c-----------------------
Q 035891            2 KYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDS--------I-----------------------   50 (309)
Q Consensus         2 ~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~--------~-----------------------   50 (309)
                      +.|++|++|++++| .++.+|.  +++|++|++|++++|.+..+++-.        +                       
T Consensus        63 ~~L~nL~~L~Ls~N-~l~~l~~--l~~L~~L~~L~L~~n~i~~i~~l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~  139 (384)
T d2omza2          63 EYLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL  139 (384)
T ss_dssp             GGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEE
T ss_pred             ccCCCCCEEeCcCC-cCCCCcc--ccCCcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            46788888888888 8888875  788888888888888876543200        0                       


Q ss_pred             ----cc--------------------------------------CCcccchhhhhccCCCceEEEEEecchhhhhhcCCc
Q 035891           51 ----LF--------------------------------------GGSLVLVEELLGLERLNVLTITLQSFAALHRLLTSP   88 (309)
Q Consensus        51 ----l~--------------------------------------~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~~~~   88 (309)
                          +.                                      ............+++++.+.+..+....+.....  
T Consensus       140 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~~~~--  217 (384)
T d2omza2         140 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI--  217 (384)
T ss_dssp             EEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGG--
T ss_pred             ccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCCcccc--
Confidence                00                                      0011122345556667777665544443332222  


Q ss_pred             CccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCceec
Q 035891           89 SLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLR  168 (309)
Q Consensus        89 ~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~  168 (309)
                           .++|+.|+++++ .++.+  +.+..+++|+.|++.++ .+..++.  ..          .+++|+.|+++++.+.
T Consensus       218 -----~~~L~~L~l~~n-~l~~~--~~l~~l~~L~~L~l~~n-~l~~~~~--~~----------~~~~L~~L~l~~~~l~  276 (384)
T d2omza2         218 -----LTNLDELSLNGN-QLKDI--GTLASLTNLTDLDLANN-QISNLAP--LS----------GLTKLTELKLGANQIS  276 (384)
T ss_dssp             -----CTTCCEEECCSS-CCCCC--GGGGGCTTCSEEECCSS-CCCCCGG--GT----------TCTTCSEEECCSSCCC
T ss_pred             -----cCCCCEEECCCC-CCCCc--chhhcccccchhccccC-ccCCCCc--cc----------ccccCCEeeccCcccC
Confidence                 236888888875 34444  34667778888888774 4444432  11          4566666666666544


Q ss_pred             ccCccCCCCCccEEEEEcCccccccccccccCC--------cCcccccCCccCCccceeeccccccccccCCCccCCCCc
Q 035891          169 HVTWLILAPNLKHIEVYNCRYLDEIISLEKLGE--------VPSEEMQNLFPFARLESLSLYALGNLRSIYPKALPFPHL  240 (309)
Q Consensus       169 ~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~--------~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L  240 (309)
                      .++.+..++.++.+.+.++. ++.+........        ........+..+|+|++|++++| .++.++ ....+++|
T Consensus       277 ~~~~~~~~~~l~~l~~~~n~-l~~~~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n-~l~~l~-~l~~l~~L  353 (384)
T d2omza2         277 NISPLAGLTALTNLELNENQ-LEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANN-KVSDVS-SLANLTNI  353 (384)
T ss_dssp             CCGGGTTCTTCSEEECCSSC-CSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSS-CCCCCG-GGGGCTTC
T ss_pred             CCCccccccccccccccccc-cccccccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCC-CCCCCh-hHcCCCCC
Confidence            44444555555555554442 222210000000        00000023456677777777765 555554 23456777


Q ss_pred             cEEeecCcccCCCCC
Q 035891          241 KELEVNLCPKLEKLP  255 (309)
Q Consensus       241 ~~L~i~~C~~L~~lp  255 (309)
                      ++|++++| +++.++
T Consensus       354 ~~L~l~~N-~l~~l~  367 (384)
T d2omza2         354 NWLSAGHN-QISDLT  367 (384)
T ss_dssp             CEEECCSS-CCCBCG
T ss_pred             CEEECCCC-cCCCCh
Confidence            77777665 555554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.62  E-value=3.4e-15  Score=127.20  Aligned_cols=202  Identities=14%  Similarity=0.146  Sum_probs=139.0

Q ss_pred             CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhh
Q 035891            5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRL   84 (309)
Q Consensus         5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~   84 (309)
                      .++++|++++| .++.+|.+.+.++++|++|++++|.+.            ...+..+..+++|+.+++.++....++..
T Consensus        31 ~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~l~~n~~~------------~i~~~~f~~l~~L~~L~l~~n~l~~l~~~   97 (305)
T d1xkua_          31 PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKIS------------KISPGAFAPLVKLERLYLSKNQLKELPEK   97 (305)
T ss_dssp             TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCC------------CBCTTTTTTCTTCCEEECCSSCCSBCCSS
T ss_pred             CCCCEEECcCC-cCCCcChhHhhcccccccccccccccc------------ccchhhhhCCCccCEecccCCccCcCccc
Confidence            57999999999 999999766899999999999999987            34456688899999998876655544322


Q ss_pred             cCCcCccccCCCcCeEEEecCCCCCeec--------------------------ccCccccccCCEEEEecCCCCceEEc
Q 035891           85 LTSPSLQSIFSNTPSLCLRNCHSLSSLS--------------------------VFTLASLRHLEALDMTNCKDLEEMEI  138 (309)
Q Consensus        85 ~~~~~l~~~l~~L~~L~l~~~~~l~~~~--------------------------~~~l~~l~~L~~L~l~~~~~l~~l~~  138 (309)
                      ..        ..++.|.+..+ .+..++                          ...+..+++|+.+++.++ .+..++.
T Consensus        98 ~~--------~~l~~L~~~~n-~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n-~l~~l~~  167 (305)
T d1xkua_          98 MP--------KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQ  167 (305)
T ss_dssp             CC--------TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCS
T ss_pred             hh--------hhhhhhhcccc-chhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccC-CccccCc
Confidence            11        02334443331 111111                          123445566666666653 3333321


Q ss_pred             CccCcccccCCCcccccCcceEEEeCceeccc-C-ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCcc
Q 035891          139 DYAGEEVKRIRETHGFFSLHKVSIWGSKLRHV-T-WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARL  216 (309)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l-~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L  216 (309)
                      .             .+++|+.|++++|..... + .+..++.+++|++++| .++.+..            ..+..+++|
T Consensus       168 ~-------------~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n-~l~~~~~------------~~~~~l~~L  221 (305)
T d1xkua_         168 G-------------LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDN------------GSLANTPHL  221 (305)
T ss_dssp             S-------------CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS-CCCEECT------------TTGGGSTTC
T ss_pred             c-------------cCCccCEEECCCCcCCCCChhHhhccccccccccccc-ccccccc------------ccccccccc
Confidence            1             467888888887722222 2 4566778888888776 4555532            456788999


Q ss_pred             ceeeccccccccccCCCccCCCCccEEeecCcccCCCCCCC
Q 035891          217 ESLSLYALGNLRSIYPKALPFPHLKELEVNLCPKLEKLPFD  257 (309)
Q Consensus       217 ~~L~L~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~  257 (309)
                      ++|+++++ ++++++.+...+++|+.|+++++ +++.++..
T Consensus       222 ~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~N-~i~~i~~~  260 (305)
T d1xkua_         222 RELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSN  260 (305)
T ss_dssp             CEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTT
T ss_pred             eeeecccc-cccccccccccccCCCEEECCCC-ccCccChh
Confidence            99999997 79999887778999999999997 79988653

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.3e-15  Score=128.72  Aligned_cols=36  Identities=17%  Similarity=0.159  Sum_probs=18.8

Q ss_pred             CcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCC
Q 035891            7 LKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSS   43 (309)
Q Consensus         7 Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~   43 (309)
                      +++|+|++| .++.+|...+.++++|++|+++++.+.
T Consensus        34 ~~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~ls~n~l~   69 (284)
T d1ozna_          34 SQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLA   69 (284)
T ss_dssp             CSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCEEECcCC-cCCCCCHHHhhcccccccccccccccc
Confidence            455555555 555555444555555555555555543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.2e-15  Score=127.70  Aligned_cols=174  Identities=18%  Similarity=0.138  Sum_probs=137.2

Q ss_pred             CCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhh
Q 035891            5 VNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRL   84 (309)
Q Consensus         5 ~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~   84 (309)
                      ++|++|+|++| .++.+|.+.+.++++|++|++++|.+..             + ...+.+++|+.|+++.+........
T Consensus        31 ~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~L~~N~l~~-------------l-~~~~~l~~L~~L~Ls~N~l~~~~~~   95 (266)
T d1p9ag_          31 KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTK-------------L-QVDGTLPVLGTLDLSHNQLQSLPLL   95 (266)
T ss_dssp             TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCE-------------E-ECCSCCTTCCEEECCSSCCSSCCCC
T ss_pred             cCCCEEECcCC-cCCCcCHHHhhccccccccccccccccc-------------c-ccccccccccccccccccccccccc
Confidence            47999999999 9999997779999999999999999852             2 2346789999999987665443322


Q ss_pred             cCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeC
Q 035891           85 LTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWG  164 (309)
Q Consensus        85 ~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  164 (309)
                      ..  .    +++|+.|+++++.. ..++...+..+.+++.|.+.+ +.+..++.....          .+++|+.+++++
T Consensus        96 ~~--~----l~~L~~L~l~~~~~-~~~~~~~~~~l~~l~~L~l~~-n~l~~l~~~~~~----------~l~~l~~l~l~~  157 (266)
T d1p9ag_          96 GQ--T----LPALTVLDVSFNRL-TSLPLGALRGLGELQELYLKG-NELKTLPPGLLT----------PTPKLEKLSLAN  157 (266)
T ss_dssp             TT--T----CTTCCEEECCSSCC-CCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTT----------TCTTCCEEECTT
T ss_pred             cc--c----cccccccccccccc-ceeeccccccccccccccccc-cccceecccccc----------ccccchhccccc
Confidence            11  2    44799999998654 445445667888999999998 578888776654          789999999999


Q ss_pred             ceecccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccc
Q 035891          165 SKLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALG  225 (309)
Q Consensus       165 c~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~  225 (309)
                      |++..++  .+..+++|++|+|+++. ++.++             ..+..+++|+.|.|++.|
T Consensus       158 N~l~~~~~~~~~~l~~L~~L~Ls~N~-L~~lp-------------~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         158 NNLTELPAGLLNGLENLDTLLLQENS-LYTIP-------------KGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSSC-CCCCC-------------TTTTTTCCCSEEECCSCC
T ss_pred             ccccccCccccccccccceeecccCC-CcccC-------------hhHCCCCCCCEEEecCCC
Confidence            9887776  36778999999999874 77775             456678999999999753

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.59  E-value=2.6e-15  Score=121.11  Aligned_cols=37  Identities=16%  Similarity=0.144  Sum_probs=20.2

Q ss_pred             CCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCC
Q 035891            4 LVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSS   43 (309)
Q Consensus         4 L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~   43 (309)
                      |.+|++|++++| .++.++.  +..+++|++|++++|.+.
T Consensus        45 L~~L~~L~l~~~-~i~~l~~--l~~l~~L~~L~L~~n~i~   81 (210)
T d1h6ta2          45 LNSIDQIIANNS-DIKSVQG--IQYLPNVTKLFLNGNKLT   81 (210)
T ss_dssp             HHTCCEEECTTS-CCCCCTT--GGGCTTCCEEECCSSCCC
T ss_pred             hcCccEEECcCC-CCCCchh--HhhCCCCCEEeCCCcccc
Confidence            344555555555 5555543  555555666655555553

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.59  E-value=3.4e-15  Score=119.36  Aligned_cols=74  Identities=14%  Similarity=0.247  Sum_probs=38.8

Q ss_pred             cccCcceEEEeCceecccCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCC
Q 035891          153 GFFSLHKVSIWGSKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYP  232 (309)
Q Consensus       153 ~~~~L~~L~l~~c~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~  232 (309)
                      .+++|+.|++++|++..++.+..+++|++|++.+| .++++              ..++.+++|++|+++++ ++++++.
T Consensus       126 ~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n-~l~~l--------------~~l~~l~~L~~L~ls~N-~i~~i~~  189 (199)
T d2omxa2         126 NLTNLNRLELSSNTISDISALSGLTSLQQLNFSSN-QVTDL--------------KPLANLTTLERLDISSN-KVSDISV  189 (199)
T ss_dssp             TCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSS-CCCCC--------------GGGTTCTTCCEEECCSS-CCCCCGG
T ss_pred             hhhhhHHhhhhhhhhcccccccccccccccccccc-cccCC--------------ccccCCCCCCEEECCCC-CCCCCcc
Confidence            45566666666555444444555566666666554 33333              13445566666666664 4555532


Q ss_pred             CccCCCCccEE
Q 035891          233 KALPFPHLKEL  243 (309)
Q Consensus       233 ~~~~~~~L~~L  243 (309)
                       ...+++|++|
T Consensus       190 -l~~L~~L~~L  199 (199)
T d2omxa2         190 -LAKLTNLESL  199 (199)
T ss_dssp             -GGGCTTCSEE
T ss_pred             -ccCCCCCCcC
Confidence             2345555543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.58  E-value=1.8e-14  Score=122.64  Aligned_cols=215  Identities=17%  Similarity=0.165  Sum_probs=139.3

Q ss_pred             CCCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCcc-----cc--C--CcccchhhhhccCCCceE
Q 035891            1 LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSI-----LF--G--GSLVLVEELLGLERLNVL   71 (309)
Q Consensus         1 l~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~-----l~--~--~~~~~~~~l~~L~~L~~L   71 (309)
                      |.++.+|++|++++| .+..++.+.+.++++|++|++++|++..++....     +.  .  ........+.....+..+
T Consensus        51 f~~l~~L~~L~l~~n-~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l  129 (305)
T d1xkua_          51 FKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV  129 (305)
T ss_dssp             TTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEE
T ss_pred             hhccccccccccccc-cccccchhhhhCCCccCEecccCCccCcCccchhhhhhhhhccccchhhhhhhhhhcccccccc
Confidence            568899999999999 8888866569999999999999999887765421     10  1  011112223445555555


Q ss_pred             EEEEecchhhhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCc
Q 035891           72 TITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRET  151 (309)
Q Consensus        72 ~l~~~~~~~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~  151 (309)
                      ....+..........  .+.. +++|+.+++.++. +..++.   ..+++|+.|++.++ ...........         
T Consensus       130 ~~~~n~~~~~~~~~~--~~~~-l~~L~~l~l~~n~-l~~l~~---~~~~~L~~L~l~~n-~~~~~~~~~~~---------  192 (305)
T d1xkua_         130 ELGTNPLKSSGIENG--AFQG-MKKLSYIRIADTN-ITTIPQ---GLPPSLTELHLDGN-KITKVDAASLK---------  192 (305)
T ss_dssp             ECCSSCCCGGGBCTT--GGGG-CTTCCEEECCSSC-CCSCCS---SCCTTCSEEECTTS-CCCEECTGGGT---------
T ss_pred             ccccccccccCCCcc--cccc-ccccCccccccCC-ccccCc---ccCCccCEEECCCC-cCCCCChhHhh---------
Confidence            543322222211111  1111 4468888887753 344432   23568888888874 44444433333         


Q ss_pred             ccccCcceEEEeCceecccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccc
Q 035891          152 HGFFSLHKVSIWGSKLRHVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRS  229 (309)
Q Consensus       152 ~~~~~L~~L~l~~c~l~~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~  229 (309)
                       .++.++.|++++|.+..++  ++..+++|++|++++| .++.++             ..+..+++|++|+++++ +++.
T Consensus       193 -~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N-~L~~lp-------------~~l~~l~~L~~L~Ls~N-~i~~  256 (305)
T d1xkua_         193 -GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVP-------------GGLADHKYIQVVYLHNN-NISA  256 (305)
T ss_dssp             -TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCC-------------TTTTTCSSCCEEECCSS-CCCC
T ss_pred             -ccccccccccccccccccccccccccccceeeecccc-cccccc-------------cccccccCCCEEECCCC-ccCc
Confidence             6778888888888665554  4667888999999887 466664             45677889999999885 6887


Q ss_pred             cCCCcc-------CCCCccEEeecCcc
Q 035891          230 IYPKAL-------PFPHLKELEVNLCP  249 (309)
Q Consensus       230 l~~~~~-------~~~~L~~L~i~~C~  249 (309)
                      ++...+       ..++|+.|++.++|
T Consensus       257 i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         257 IGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             CCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             cChhhccCcchhcccCCCCEEECCCCc
Confidence            765332       45778888888875

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.57  E-value=1.4e-15  Score=130.11  Aligned_cols=216  Identities=15%  Similarity=0.116  Sum_probs=125.5

Q ss_pred             CCCcEEecCCCcCCC---CCchhhhcCCCCCceEEecc-cCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchh
Q 035891            5 VNLKCLNLEYTYRIY---KIPGQVISNLKMLEALRMFK-CGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAA   80 (309)
Q Consensus         5 ~~Lr~L~l~~~~~l~---~lp~~~i~~L~~L~~L~l~~-~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~   80 (309)
                      .+++.|+++++ .+.   .+|.+ +++|++|++|++++ |.+.            ..+|..+++|++|++|+++.+....
T Consensus        50 ~~v~~L~L~~~-~l~g~~~lp~~-l~~L~~L~~L~Ls~~N~l~------------g~iP~~i~~L~~L~~L~Ls~N~l~~  115 (313)
T d1ogqa_          50 YRVNNLDLSGL-NLPKPYPIPSS-LANLPYLNFLYIGGINNLV------------GPIPPAIAKLTQLHYLYITHTNVSG  115 (313)
T ss_dssp             CCEEEEEEECC-CCSSCEECCGG-GGGCTTCSEEEEEEETTEE------------SCCCGGGGGCTTCSEEEEEEECCEE
T ss_pred             EEEEEEECCCC-CCCCCCCCChH-HhcCccccccccccccccc------------cccccccccccccchhhhccccccc
Confidence            36888999988 665   47887 89999999999987 4554            4677889999999999998877654


Q ss_pred             hhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCc--c-----------ccc
Q 035891           81 LHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGE--E-----------VKR  147 (309)
Q Consensus        81 l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~--~-----------~~~  147 (309)
                      +..... ..    ++.|+.+++..+.....++ ..+..+++|+.++++++.....++..+...  .           .+.
T Consensus       116 ~~~~~~-~~----~~~L~~l~l~~N~~~~~~p-~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~  189 (313)
T d1ogqa_         116 AIPDFL-SQ----IKTLVTLDFSYNALSGTLP-PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK  189 (313)
T ss_dssp             ECCGGG-GG----CTTCCEEECCSSEEESCCC-GGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE
T ss_pred             cccccc-cc----hhhhcccccccccccccCc-hhhccCcccceeecccccccccccccccccccccccccccccccccc
Confidence            322111 01    2357778777755444444 456777788888877643222333221110  0           000


Q ss_pred             CCCcccccCcceEEEeCc-eecccC-ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccc
Q 035891          148 IRETHGFFSLHKVSIWGS-KLRHVT-WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALG  225 (309)
Q Consensus       148 ~~~~~~~~~L~~L~l~~c-~l~~l~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~  225 (309)
                      ......-.....+++..+ ....++ ..+.+++++.+++.++.....+              ..+..+++|+.|+++++ 
T Consensus       190 ~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~--------------~~~~~~~~L~~L~Ls~N-  254 (313)
T d1ogqa_         190 IPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL--------------GKVGLSKNLNGLDLRNN-  254 (313)
T ss_dssp             CCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG--------------GGCCCCTTCCEEECCSS-
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccc--------------cccccccccccccCccC-
Confidence            000001112233444444 222222 3345667777777666433332              24556677777777765 


Q ss_pred             ccc-ccCCCccCCCCccEEeecCcccCC-CCCC
Q 035891          226 NLR-SIYPKALPFPHLKELEVNLCPKLE-KLPF  256 (309)
Q Consensus       226 ~L~-~l~~~~~~~~~L~~L~i~~C~~L~-~lp~  256 (309)
                      +++ .+|.....+++|++|+++++ ++. .+|.
T Consensus       255 ~l~g~iP~~l~~L~~L~~L~Ls~N-~l~g~iP~  286 (313)
T d1ogqa_         255 RIYGTLPQGLTQLKFLHSLNVSFN-NLCGEIPQ  286 (313)
T ss_dssp             CCEECCCGGGGGCTTCCEEECCSS-EEEEECCC
T ss_pred             eecccCChHHhCCCCCCEEECcCC-cccccCCC
Confidence            444 56666666777777777775 444 4554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=5.7e-16  Score=130.90  Aligned_cols=132  Identities=24%  Similarity=0.332  Sum_probs=57.4

Q ss_pred             CcCeEEEecCCCCCeecccC-ccccccCCEEEEecCCCCceEEcCc-cCcccccCCCcccccCcceEEEeCc--eecc--
Q 035891           96 NTPSLCLRNCHSLSSLSVFT-LASLRHLEALDMTNCKDLEEMEIDY-AGEEVKRIRETHGFFSLHKVSIWGS--KLRH--  169 (309)
Q Consensus        96 ~L~~L~l~~~~~l~~~~~~~-l~~l~~L~~L~l~~~~~l~~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~c--~l~~--  169 (309)
                      +|++|++++|+.+++..... ...+++|++|++++|..+.+..... ..         ..+++|+.|++++|  .+.+  
T Consensus        96 ~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~---------~~~~~L~~L~l~~~~~~i~~~~  166 (284)
T d2astb2          96 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA---------HVSETITQLNLSGYRKNLQKSD  166 (284)
T ss_dssp             TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH---------HSCTTCCEEECCSCGGGSCHHH
T ss_pred             CCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhc---------ccccccchhhhccccccccccc
Confidence            45555555555444332221 1344555555555554443221110 00         02345555555554  2221  


Q ss_pred             cC-ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCC-ccCCCCccEEeecC
Q 035891          170 VT-WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPK-ALPFPHLKELEVNL  247 (309)
Q Consensus       170 l~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~-~~~~~~L~~L~i~~  247 (309)
                      +. ...++|+|++|++++|..+++...            ..+..+++|++|++++|+.++.-... ...+|+|+.|++.+
T Consensus       167 l~~l~~~~~~L~~L~L~~~~~itd~~~------------~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~  234 (284)
T d2astb2         167 LSTLVRRCPNLVHLDLSDSVMLKNDCF------------QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG  234 (284)
T ss_dssp             HHHHHHHCTTCSEEECTTCTTCCGGGG------------GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred             ccccccccccccccccccccCCCchhh------------hhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeC
Confidence            11 123345555555555554443211            23444555555555555544332211 12455555555555


Q ss_pred             c
Q 035891          248 C  248 (309)
Q Consensus       248 C  248 (309)
                      |
T Consensus       235 ~  235 (284)
T d2astb2         235 I  235 (284)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.54  E-value=1.6e-14  Score=123.48  Aligned_cols=218  Identities=17%  Similarity=0.121  Sum_probs=152.1

Q ss_pred             CCCCCCCcEEecCCCcCCC-CCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecch
Q 035891            1 LKYLVNLKCLNLEYTYRIY-KIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFA   79 (309)
Q Consensus         1 l~~L~~Lr~L~l~~~~~l~-~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~   79 (309)
                      |++|++||+|+++++..+. .+|.+ |++|++|++|++++|++.            ...+..+..+.+|+.+++..+...
T Consensus        72 l~~L~~L~~L~Ls~~N~l~g~iP~~-i~~L~~L~~L~Ls~N~l~------------~~~~~~~~~~~~L~~l~l~~N~~~  138 (313)
T d1ogqa_          72 LANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVS------------GAIPDFLSQIKTLVTLDFSYNALS  138 (313)
T ss_dssp             GGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCE------------EECCGGGGGCTTCCEEECCSSEEE
T ss_pred             HhcCccccccccccccccccccccc-cccccccchhhhcccccc------------ccccccccchhhhccccccccccc
Confidence            4689999999999732555 79998 999999999999999996            455666888999999988755433


Q ss_pred             h-hh-hhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccC-CEEEEecCCCCceEEcCccCcc------------
Q 035891           80 A-LH-RLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHL-EALDMTNCKDLEEMEIDYAGEE------------  144 (309)
Q Consensus        80 ~-l~-~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L-~~L~l~~~~~l~~l~~~~~~~~------------  144 (309)
                      . ++ .+..       ++.++.++++++.....+| ..+..+..+ +.+.+.. +.+...........            
T Consensus       139 ~~~p~~l~~-------l~~L~~l~l~~n~l~~~ip-~~~~~l~~l~~~l~~~~-n~l~~~~~~~~~~l~~~~l~l~~~~~  209 (313)
T d1ogqa_         139 GTLPPSISS-------LPNLVGITFDGNRISGAIP-DSYGSFSKLFTSMTISR-NRLTGKIPPTFANLNLAFVDLSRNML  209 (313)
T ss_dssp             SCCCGGGGG-------CTTCCEEECCSSCCEEECC-GGGGCCCTTCCEEECCS-SEEEEECCGGGGGCCCSEEECCSSEE
T ss_pred             ccCchhhcc-------Ccccceeeccccccccccc-ccccccccccccccccc-cccccccccccccccccccccccccc
Confidence            2 22 1222       4479999999865544554 345555555 6676665 44443332221110            


Q ss_pred             -cccCCCcccccCcceEEEeCceec-ccCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeecc
Q 035891          145 -VKRIRETHGFFSLHKVSIWGSKLR-HVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLY  222 (309)
Q Consensus       145 -~~~~~~~~~~~~L~~L~l~~c~l~-~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~  222 (309)
                       ...+.....+++|+.+++.+|.+. .++.++.+++|++|++++|.....++             ..++.+++|++|+|+
T Consensus       210 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP-------------~~l~~L~~L~~L~Ls  276 (313)
T d1ogqa_         210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP-------------QGLTQLKFLHSLNVS  276 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCC-------------GGGGGCTTCCEEECC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccCccCeecccCC-------------hHHhCCCCCCEEECc
Confidence             011111226789999999999444 34567788999999999886544555             568899999999999


Q ss_pred             cccccc-ccCCCccCCCCccEEeecCcccCCCCC
Q 035891          223 ALGNLR-SIYPKALPFPHLKELEVNLCPKLEKLP  255 (309)
Q Consensus       223 ~~~~L~-~l~~~~~~~~~L~~L~i~~C~~L~~lp  255 (309)
                      ++ +++ .+|. ...+++|+.+++.+.+.+...|
T Consensus       277 ~N-~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~p  308 (313)
T d1ogqa_         277 FN-NLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             SS-EEEEECCC-STTGGGSCGGGTCSSSEEESTT
T ss_pred             CC-cccccCCC-cccCCCCCHHHhCCCccccCCC
Confidence            96 666 6763 4578889999999888777655

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.54  E-value=1.4e-14  Score=118.13  Aligned_cols=168  Identities=21%  Similarity=0.278  Sum_probs=128.4

Q ss_pred             CCCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchh
Q 035891            1 LKYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAA   80 (309)
Q Consensus         1 l~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~   80 (309)
                      ++++++|++|++++| .+..++.  +.++++|+++++++|...              .+.++..+++|+.+++..+....
T Consensus        59 l~~l~~L~~L~ls~n-~i~~~~~--l~~l~~l~~l~~~~n~~~--------------~i~~l~~l~~L~~l~l~~~~~~~  121 (227)
T d1h6ua2          59 VQYLNNLIGLELKDN-QITDLAP--LKNLTKITELELSGNPLK--------------NVSAIAGLQSIKTLDLTSTQITD  121 (227)
T ss_dssp             GGGCTTCCEEECCSS-CCCCCGG--GTTCCSCCEEECCSCCCS--------------CCGGGTTCTTCCEEECTTSCCCC
T ss_pred             HhcCCCCcEeecCCc-eeecccc--cccccccccccccccccc--------------ccccccccccccccccccccccc
Confidence            357899999999999 8988876  899999999999998875              23467889999999886544444


Q ss_pred             hhhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceE
Q 035891           81 LHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKV  160 (309)
Q Consensus        81 l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L  160 (309)
                      +..+..       .+.+..+.+.++... ..  ..+..+++|+.|++.++ .+.....  ..          .+++|+.|
T Consensus       122 ~~~~~~-------~~~~~~l~~~~~~~~-~~--~~~~~~~~L~~L~l~~n-~~~~~~~--l~----------~l~~L~~L  178 (227)
T d1h6ua2         122 VTPLAG-------LSNLQVLYLDLNQIT-NI--SPLAGLTNLQYLSIGNA-QVSDLTP--LA----------NLSKLTTL  178 (227)
T ss_dssp             CGGGTT-------CTTCCEEECCSSCCC-CC--GGGGGCTTCCEEECCSS-CCCCCGG--GT----------TCTTCCEE
T ss_pred             cchhcc-------ccchhhhhchhhhhc-hh--hhhcccccccccccccc-ccccchh--hc----------ccccceec
Confidence            433333       225778888775432 22  24567789999999885 4443321  22          78999999


Q ss_pred             EEeCceecccCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccc
Q 035891          161 SIWGSKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYA  223 (309)
Q Consensus       161 ~l~~c~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~  223 (309)
                      ++++|++++++++..+++|++|++++| .++++.              .++.+++|++|++++
T Consensus       179 ~Ls~n~l~~l~~l~~l~~L~~L~Ls~N-~lt~i~--------------~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         179 KADDNKISDISPLASLPNLIEVHLKNN-QISDVS--------------PLANTSNLFIVTLTN  226 (227)
T ss_dssp             ECCSSCCCCCGGGGGCTTCCEEECTTS-CCCBCG--------------GGTTCTTCCEEEEEE
T ss_pred             ccCCCccCCChhhcCCCCCCEEECcCC-cCCCCc--------------ccccCCCCCEEEeeC
Confidence            999998888888889999999999998 577774              467899999999874

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=4.4e-16  Score=131.63  Aligned_cols=207  Identities=19%  Similarity=0.257  Sum_probs=142.0

Q ss_pred             CCCCCcEEecCCCcCCCC--CchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEec-ch
Q 035891            3 YLVNLKCLNLEYTYRIYK--IPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQS-FA   79 (309)
Q Consensus         3 ~L~~Lr~L~l~~~~~l~~--lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~-~~   79 (309)
                      ...+|++|++++| .+..  ++. ++.++++|++|++++|.+.            +..+..++.+++|+.|++++.. .+
T Consensus        44 ~~~~L~~LdLs~~-~i~~~~l~~-l~~~c~~L~~L~L~~~~l~------------~~~~~~l~~~~~L~~L~Ls~c~~it  109 (284)
T d2astb2          44 SPFRVQHMDLSNS-VIEVSTLHG-ILSQCSKLQNLSLEGLRLS------------DPIVNTLAKNSNLVRLNLSGCSGFS  109 (284)
T ss_dssp             CCBCCCEEECTTC-EECHHHHHH-HHTTBCCCSEEECTTCBCC------------HHHHHHHTTCTTCSEEECTTCBSCC
T ss_pred             cCCCCCEEECCCC-ccCHHHHHH-HHHhCCCcccccccccCCC------------cHHHHHHhcCCCCcCcccccccccc
Confidence            4568999999998 6653  444 5889999999999999886            6778889999999999996422 22


Q ss_pred             --hhhhhcCCcCccccCCCcCeEEEecCCCCCeeccc-Ccc-ccccCCEEEEecCC-CCceEEcCccCcccccCCCcccc
Q 035891           80 --ALHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVF-TLA-SLRHLEALDMTNCK-DLEEMEIDYAGEEVKRIRETHGF  154 (309)
Q Consensus        80 --~l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~-~l~-~l~~L~~L~l~~~~-~l~~l~~~~~~~~~~~~~~~~~~  154 (309)
                        .+..+..  .    +++|++|++++|..+.+.... .+. ..++|+.|++.+|. .+..........         .+
T Consensus       110 d~~l~~l~~--~----~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~---------~~  174 (284)
T d2astb2         110 EFALQTLLS--S----CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR---------RC  174 (284)
T ss_dssp             HHHHHHHHH--H----CTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH---------HC
T ss_pred             ccccchhhH--H----HHhccccccccccccccccchhhhcccccccchhhhccccccccccccccccc---------cc
Confidence              2222221  1    447999999999877654322 222 34689999999863 343322221111         57


Q ss_pred             cCcceEEEeCc-eecc--cCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccC
Q 035891          155 FSLHKVSIWGS-KLRH--VTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIY  231 (309)
Q Consensus       155 ~~L~~L~l~~c-~l~~--l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~  231 (309)
                      ++|++|++++| .+++  +..+..+++|++|++++|..+++...            ..+..+|+|+.|++.+|-.-..+.
T Consensus       175 ~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l------------~~L~~~~~L~~L~l~~~~~d~~l~  242 (284)
T d2astb2         175 PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL------------LELGEIPTLKTLQVFGIVPDGTLQ  242 (284)
T ss_dssp             TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG------------GGGGGCTTCCEEECTTSSCTTCHH
T ss_pred             ccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHH------------HHHhcCCCCCEEeeeCCCCHHHHH
Confidence            89999999999 6653  34577899999999999988765421            356789999999999972222222


Q ss_pred             CCccCCCCccEEeecCcccCCCC
Q 035891          232 PKALPFPHLKELEVNLCPKLEKL  254 (309)
Q Consensus       232 ~~~~~~~~L~~L~i~~C~~L~~l  254 (309)
                      .-...+|+|+   + +|.++..+
T Consensus       243 ~l~~~lp~L~---i-~~~~ls~~  261 (284)
T d2astb2         243 LLKEALPHLQ---I-NCSHFTTI  261 (284)
T ss_dssp             HHHHHSTTSE---E-SCCCSCCT
T ss_pred             HHHHhCcccc---c-cCccCCCC
Confidence            1122566665   3 56666654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.1e-13  Score=113.54  Aligned_cols=86  Identities=14%  Similarity=0.155  Sum_probs=43.9

Q ss_pred             CcceEEEeCceecccC-ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCc
Q 035891          156 SLHKVSIWGSKLRHVT-WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKA  234 (309)
Q Consensus       156 ~L~~L~l~~c~l~~l~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~  234 (309)
                      .+..|++.++++..++ .....+++..+...++..+++++.            ..+..+++|++|+++++ +++.++.. 
T Consensus       154 ~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~------------~~f~~l~~L~~L~Ls~N-~l~~l~~~-  219 (242)
T d1xwdc1         154 ESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPN------------DVFHGASGPVILDISRT-RIHSLPSY-  219 (242)
T ss_dssp             SCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCT------------TTTTTSCCCSEEECTTS-CCCCCCSS-
T ss_pred             cceeeecccccccccccccccchhhhccccccccccccccH------------HHhcCCCCCCEEECCCC-cCCccCHH-
Confidence            4555555555444433 122234444444444445555432            23556677777777764 56666543 


Q ss_pred             cCCCCccEEeecCcccCCCCCC
Q 035891          235 LPFPHLKELEVNLCPKLEKLPF  256 (309)
Q Consensus       235 ~~~~~L~~L~i~~C~~L~~lp~  256 (309)
                       .|.+|..|..-++.+++++|.
T Consensus       220 -~~~~l~~L~~l~~~~l~~lp~  240 (242)
T d1xwdc1         220 -GLENLKKLRARSTYNLKKLPT  240 (242)
T ss_dssp             -SCTTCCEEESSSEESSSCSCC
T ss_pred             -HHcCCcccccCcCCCCCcCCC
Confidence             344455555555555666654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=8.4e-14  Score=117.28  Aligned_cols=200  Identities=17%  Similarity=0.176  Sum_probs=145.0

Q ss_pred             EEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhcCCc
Q 035891            9 CLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLLTSP   88 (309)
Q Consensus         9 ~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~~~~   88 (309)
                      .++.+++ .++.+|.. +.  .++++|++++|++.            ......+..+++|+.++++++....+..... .
T Consensus        15 ~v~c~~~-~L~~iP~~-ip--~~~~~L~Ls~N~i~------------~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~-~   77 (284)
T d1ozna_          15 TTSCPQQ-GLQAVPVG-IP--AASQRIFLHGNRIS------------HVPAASFRACRNLTILWLHSNVLARIDAAAF-T   77 (284)
T ss_dssp             EEECCSS-CCSSCCTT-CC--TTCSEEECTTSCCC------------EECTTTTTTCTTCCEEECCSSCCCEECTTTT-T
T ss_pred             EEEcCCC-CCCccCCC-CC--CCCCEEECcCCcCC------------CCCHHHhhccccccccccccccccccccccc-c
Confidence            4566666 78899987 43  67899999999996            3333568899999999997666554433221 1


Q ss_pred             CccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCceec
Q 035891           89 SLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLR  168 (309)
Q Consensus        89 ~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~  168 (309)
                      .    ++.++.+.+.....+..++...+.++++|+.|++.++ .+..++.....          .+.+|+.+++++++++
T Consensus        78 ~----~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~----------~~~~L~~l~l~~N~l~  142 (284)
T d1ozna_          78 G----LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFR----------GLAALQYLYLQDNALQ  142 (284)
T ss_dssp             T----CTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTT----------TCTTCCEEECCSSCCC
T ss_pred             c----cccccccccccccccccccchhhcccccCCEEecCCc-ccccccccccc----------hhcccchhhhcccccc
Confidence            1    3357888877777777776567888899999999984 55555544443          6788999999988777


Q ss_pred             ccC--ccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCC-CccCCCCccEEee
Q 035891          169 HVT--WLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYP-KALPFPHLKELEV  245 (309)
Q Consensus       169 ~l~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~-~~~~~~~L~~L~i  245 (309)
                      .++  .+...++|++|+++++ .++.++.            ..+..+++|+.+.+.++ ++..+.. ....+++|++|++
T Consensus       143 ~i~~~~f~~~~~L~~L~l~~N-~l~~l~~------------~~f~~l~~L~~l~l~~N-~l~~i~~~~f~~l~~L~~L~l  208 (284)
T d1ozna_         143 ALPDDTFRDLGNLTHLFLHGN-RISSVPE------------RAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYL  208 (284)
T ss_dssp             CCCTTTTTTCTTCCEEECCSS-CCCEECT------------TTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEEC
T ss_pred             ccChhHhccccchhhcccccC-cccccch------------hhhccccccchhhhhhc-cccccChhHhhhhhhcccccc
Confidence            775  3556788999999887 4666643            45677889999999885 5666643 4447889999999


Q ss_pred             cCcccCCCCC
Q 035891          246 NLCPKLEKLP  255 (309)
Q Consensus       246 ~~C~~L~~lp  255 (309)
                      +++ ++..+|
T Consensus       209 ~~N-~i~~~~  217 (284)
T d1ozna_         209 FAN-NLSALP  217 (284)
T ss_dssp             CSS-CCSCCC
T ss_pred             ccc-cccccc
Confidence            886 556655

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.51  E-value=5.6e-14  Score=122.93  Aligned_cols=188  Identities=18%  Similarity=0.231  Sum_probs=140.1

Q ss_pred             CCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhh
Q 035891            3 YLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALH   82 (309)
Q Consensus         3 ~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~   82 (309)
                      .++++++++++++ .++.++.  .+.+++|++|++++|.+.             . ++.++.+++|+.+++..+....+.
T Consensus       195 ~l~~~~~l~l~~n-~i~~~~~--~~~~~~L~~L~l~~n~l~-------------~-~~~l~~l~~L~~L~l~~n~l~~~~  257 (384)
T d2omza2         195 KLTNLESLIATNN-QISDITP--LGILTNLDELSLNGNQLK-------------D-IGTLASLTNLTDLDLANNQISNLA  257 (384)
T ss_dssp             GCTTCSEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCC-------------C-CGGGGGCTTCSEEECCSSCCCCCG
T ss_pred             cccccceeeccCC-ccCCCCc--ccccCCCCEEECCCCCCC-------------C-cchhhcccccchhccccCccCCCC
Confidence            4677888888888 7887765  577888999999888875             1 245778888999888766555554


Q ss_pred             hhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEE
Q 035891           83 RLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSI  162 (309)
Q Consensus        83 ~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l  162 (309)
                      .+..       +++|+.|+++++. +..+  ..+..++.++.+.+..+ .+..+.. ..           .+++++.|++
T Consensus       258 ~~~~-------~~~L~~L~l~~~~-l~~~--~~~~~~~~l~~l~~~~n-~l~~~~~-~~-----------~~~~l~~L~l  314 (384)
T d2omza2         258 PLSG-------LTKLTELKLGANQ-ISNI--SPLAGLTALTNLELNEN-QLEDISP-IS-----------NLKNLTYLTL  314 (384)
T ss_dssp             GGTT-------CTTCSEEECCSSC-CCCC--GGGTTCTTCSEEECCSS-CCSCCGG-GG-----------GCTTCSEEEC
T ss_pred             cccc-------cccCCEeeccCcc-cCCC--Ccccccccccccccccc-ccccccc-cc-----------hhcccCeEEC
Confidence            4333       3368889888753 3444  24566778888888763 4544331 11           6899999999


Q ss_pred             eCceecccCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCccCCCCccE
Q 035891          163 WGSKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALPFPHLKE  242 (309)
Q Consensus       163 ~~c~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~  242 (309)
                      ++|++.+++.+..+|+|++|++++| .++.+.              .+..+++|++|+++++ +++.++. ...+++|+.
T Consensus       315 s~n~l~~l~~l~~l~~L~~L~L~~n-~l~~l~--------------~l~~l~~L~~L~l~~N-~l~~l~~-l~~l~~L~~  377 (384)
T d2omza2         315 YFNNISDISPVSSLTKLQRLFFANN-KVSDVS--------------SLANLTNINWLSAGHN-QISDLTP-LANLTRITQ  377 (384)
T ss_dssp             CSSCCSCCGGGGGCTTCCEEECCSS-CCCCCG--------------GGGGCTTCCEEECCSS-CCCBCGG-GTTCTTCSE
T ss_pred             CCCCCCCCcccccCCCCCEEECCCC-CCCCCh--------------hHcCCCCCCEEECCCC-cCCCChh-hccCCCCCE
Confidence            9998888777889999999999998 566653              4678999999999986 6887763 557899999


Q ss_pred             EeecC
Q 035891          243 LEVNL  247 (309)
Q Consensus       243 L~i~~  247 (309)
                      |++++
T Consensus       378 L~L~~  382 (384)
T d2omza2         378 LGLND  382 (384)
T ss_dssp             EECCC
T ss_pred             eeCCC
Confidence            99876

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.49  E-value=3.7e-14  Score=113.22  Aligned_cols=161  Identities=19%  Similarity=0.272  Sum_probs=110.3

Q ss_pred             CCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhh
Q 035891            4 LVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHR   83 (309)
Q Consensus         4 L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~   83 (309)
                      +.++++|+++++ .+..++.  +..+++|++|++++|.+.             .. ..++.+++|+.|++..+....++.
T Consensus        39 l~~l~~L~l~~~-~i~~l~~--l~~l~nL~~L~Ls~N~l~-------------~~-~~l~~l~~L~~L~l~~n~~~~~~~  101 (199)
T d2omxa2          39 LDQVTTLQADRL-GIKSIDG--VEYLNNLTQINFSNNQLT-------------DI-TPLKNLTKLVDILMNNNQIADITP  101 (199)
T ss_dssp             HTTCCEEECTTS-CCCCCTT--GGGCTTCCEEECCSSCCC-------------CC-GGGTTCTTCCEEECCSSCCCCCGG
T ss_pred             hcCCCEEECCCC-CCCCccc--cccCCCcCcCcccccccc-------------Cc-ccccCCcccccccccccccccccc
Confidence            567888888888 7888764  788888888888888775             12 237788888888887655555443


Q ss_pred             hcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEe
Q 035891           84 LLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIW  163 (309)
Q Consensus        84 ~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~  163 (309)
                      +..       +++|+.|+++++.... .  ..+..+++|+.|+++++ .+..++  ...          .+++|+.|++.
T Consensus       102 l~~-------l~~L~~L~l~~~~~~~-~--~~~~~l~~L~~L~l~~n-~l~~~~--~l~----------~~~~L~~L~l~  158 (199)
T d2omxa2         102 LAN-------LTNLTGLTLFNNQITD-I--DPLKNLTNLNRLELSSN-TISDIS--ALS----------GLTSLQQLNFS  158 (199)
T ss_dssp             GTT-------CTTCSEEECCSSCCCC-C--GGGTTCTTCSEEECCSS-CCCCCG--GGT----------TCTTCSEEECC
T ss_pred             ccc-------cccccccccccccccc-c--cccchhhhhHHhhhhhh-hhcccc--ccc----------ccccccccccc
Confidence            322       3368888887755432 2  23566778888888874 455443  122          67888888888


Q ss_pred             CceecccCccCCCCCccEEEEEcCccccccccccccCCcCcccccCCccCCcccee
Q 035891          164 GSKLRHVTWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESL  219 (309)
Q Consensus       164 ~c~l~~l~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  219 (309)
                      +|++++++.++.+++|++|++++| .++++.              .+..+++|++|
T Consensus       159 ~n~l~~l~~l~~l~~L~~L~ls~N-~i~~i~--------------~l~~L~~L~~L  199 (199)
T d2omxa2         159 SNQVTDLKPLANLTTLERLDISSN-KVSDIS--------------VLAKLTNLESL  199 (199)
T ss_dssp             SSCCCCCGGGTTCTTCCEEECCSS-CCCCCG--------------GGGGCTTCSEE
T ss_pred             cccccCCccccCCCCCCEEECCCC-CCCCCc--------------cccCCCCCCcC
Confidence            887777766778888888888887 466552              35566777654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.49  E-value=5.5e-14  Score=113.16  Aligned_cols=144  Identities=21%  Similarity=0.321  Sum_probs=86.1

Q ss_pred             CCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhh
Q 035891            2 KYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAAL   81 (309)
Q Consensus         2 ~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l   81 (309)
                      +.+++|++|++++| .++.++.  ++.+++|++|++++|.+.             . +..+..+++|+.+++..+....+
T Consensus        65 ~~l~~L~~L~L~~n-~i~~l~~--~~~l~~L~~L~l~~n~i~-------------~-l~~l~~l~~L~~L~l~~~~~~~~  127 (210)
T d1h6ta2          65 QYLPNVTKLFLNGN-KLTDIKP--LANLKNLGWLFLDENKVK-------------D-LSSLKDLKKLKSLSLEHNGISDI  127 (210)
T ss_dssp             GGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCC-------------C-GGGGTTCTTCCEEECTTSCCCCC
T ss_pred             hhCCCCCEEeCCCc-cccCccc--cccCcccccccccccccc-------------c-ccccccccccccccccccccccc
Confidence            56889999999999 9999986  799999999999999885             2 23567777788877754433333


Q ss_pred             hhhcCCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEE
Q 035891           82 HRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVS  161 (309)
Q Consensus        82 ~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~  161 (309)
                      ..+..       +++++.+++.++. +...  ..+..+++|+.++++++ .+..+..  ..          .+++|+.|+
T Consensus       128 ~~l~~-------l~~l~~l~~~~n~-l~~~--~~~~~l~~L~~l~l~~n-~l~~i~~--l~----------~l~~L~~L~  184 (210)
T d1h6ta2         128 NGLVH-------LPQLESLYLGNNK-ITDI--TVLSRLTKLDTLSLEDN-QISDIVP--LA----------GLTKLQNLY  184 (210)
T ss_dssp             GGGGG-------CTTCCEEECCSSC-CCCC--GGGGGCTTCSEEECCSS-CCCCCGG--GT----------TCTTCCEEE
T ss_pred             ccccc-------ccccccccccccc-cccc--ccccccccccccccccc-ccccccc--cc----------CCCCCCEEE
Confidence            22222       2245555555432 2222  22344555555555552 3333321  11          455555555


Q ss_pred             EeCceecccCccCCCCCccEEEEE
Q 035891          162 IWGSKLRHVTWLILAPNLKHIEVY  185 (309)
Q Consensus       162 l~~c~l~~l~~l~~l~~L~~L~l~  185 (309)
                      +++|.+++++.+..+++|++|+|+
T Consensus       185 Ls~N~i~~l~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         185 LSKNHISDLRALAGLKNLDVLELF  208 (210)
T ss_dssp             CCSSCCCBCGGGTTCTTCSEEEEE
T ss_pred             CCCCCCCCChhhcCCCCCCEEEcc
Confidence            555544455445555555555554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.41  E-value=1.6e-12  Score=111.95  Aligned_cols=42  Identities=21%  Similarity=0.163  Sum_probs=31.0

Q ss_pred             cCCccceeeccccccccccCCCccCCCCccEEeecCcccCCCCCCCC
Q 035891          212 PFARLESLSLYALGNLRSIYPKALPFPHLKELEVNLCPKLEKLPFDC  258 (309)
Q Consensus       212 ~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~lp~~~  258 (309)
                      .+++|++|++++| ++++++.   .+++|+.|++++| +++.+|...
T Consensus       282 ~~~~L~~L~Ls~N-~l~~lp~---~~~~L~~L~L~~N-~L~~l~~~~  323 (353)
T d1jl5a_         282 LPPSLEELNVSNN-KLIELPA---LPPRLERLIASFN-HLAEVPELP  323 (353)
T ss_dssp             CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCSCCCCCC
T ss_pred             cCCCCCEEECCCC-ccCcccc---ccCCCCEEECCCC-cCCcccccc
Confidence            3578888998886 6777764   3678888888876 677777643

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=6.9e-12  Score=102.63  Aligned_cols=206  Identities=11%  Similarity=0.101  Sum_probs=137.2

Q ss_pred             CcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhcC
Q 035891            7 LKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLLT   86 (309)
Q Consensus         7 Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~~   86 (309)
                      .++++.++. .++.+|.+ +.  +++++|++++|.+.            ......+.++++|++|+++.+..........
T Consensus        10 ~~~i~c~~~-~l~~iP~~-l~--~~l~~L~Ls~n~i~------------~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~   73 (242)
T d1xwdc1          10 NRVFLCQES-KVTEIPSD-LP--RNAIELRFVLTKLR------------VIQKGAFSGFGDLEKIEISQNDVLEVIEADV   73 (242)
T ss_dssp             SSEEEEESC-SCSSCCSC-SC--SCCSEEEEESCCCC------------EECTTTTTTCTTCCEEEEESCTTCCEECSSS
T ss_pred             CCEEEEeCC-CCCCcCCC-CC--CCCCEEECcCCcCC------------ccChhHhhccchhhhhhhccccccceeeccc
Confidence            357777777 78899986 43  58999999999985            2223357889999999998665443222211


Q ss_pred             CcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCce
Q 035891           87 SPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSK  166 (309)
Q Consensus        87 ~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  166 (309)
                      ...    +++++.+.+..++.+...+...+..+++|+.+++.++ .+...+......         .+..+..+...++.
T Consensus        74 f~~----l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~-~l~~~~~~~~~~---------~l~~l~~~~~~n~~  139 (242)
T d1xwdc1          74 FSN----LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIH---------SLQKVLLDIQDNIN  139 (242)
T ss_dssp             EES----CTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESC-CCCSCCCCTTTC---------BSSCEEEEEESCTT
T ss_pred             ccc----ccccccccccccccccccccccccccccccccccchh-hhcccccccccc---------cccccccccccccc
Confidence            122    4468999998888888887667888999999999984 555443322100         33444444444335


Q ss_pred             ecccC--ccCCC-CCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCcc-CCCCccE
Q 035891          167 LRHVT--WLILA-PNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKAL-PFPHLKE  242 (309)
Q Consensus       167 l~~l~--~l~~l-~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~-~~~~L~~  242 (309)
                      +..++  .+..+ ..++.|++.++ .++.+.             ......++++.+....+..++.++...+ .+++|+.
T Consensus       140 l~~i~~~~~~~~~~~l~~L~l~~n-~l~~i~-------------~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~  205 (242)
T d1xwdc1         140 IHTIERNSFVGLSFESVILWLNKN-GIQEIH-------------NCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVI  205 (242)
T ss_dssp             CCEECTTSSTTSBSSCEEEECCSS-CCCEEC-------------TTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSE
T ss_pred             cccccccccccccccceeeecccc-cccccc-------------cccccchhhhccccccccccccccHHHhcCCCCCCE
Confidence            55554  22223 46778888654 555554             2334456777776656678999987655 7899999


Q ss_pred             EeecCcccCCCCCCC
Q 035891          243 LEVNLCPKLEKLPFD  257 (309)
Q Consensus       243 L~i~~C~~L~~lp~~  257 (309)
                      |+++++ +++.+|..
T Consensus       206 L~Ls~N-~l~~l~~~  219 (242)
T d1xwdc1         206 LDISRT-RIHSLPSY  219 (242)
T ss_dssp             EECTTS-CCCCCCSS
T ss_pred             EECCCC-cCCccCHH
Confidence            999997 58888764

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.12  E-value=3e-11  Score=88.27  Aligned_cols=98  Identities=18%  Similarity=0.209  Sum_probs=66.9

Q ss_pred             cEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhcCC
Q 035891            8 KCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLLTS   87 (309)
Q Consensus         8 r~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~~~   87 (309)
                      |+|++++| +++.+|.  ++.+++|++|++++|.+.             .++.++..+++|+.|+++.+....++.+.. 
T Consensus         1 R~L~Ls~n-~l~~l~~--l~~l~~L~~L~ls~N~l~-------------~lp~~~~~l~~L~~L~l~~N~i~~l~~~~~-   63 (124)
T d1dcea3           1 RVLHLAHK-DLTVLCH--LEQLLLVTHLDLSHNRLR-------------ALPPALAALRCLEVLQASDNALENVDGVAN-   63 (124)
T ss_dssp             SEEECTTS-CCSSCCC--GGGGTTCCEEECCSSCCC-------------CCCGGGGGCTTCCEEECCSSCCCCCGGGTT-
T ss_pred             CEEEcCCC-CCCCCcc--cccCCCCCEEECCCCccC-------------cchhhhhhhhcccccccccccccccCcccc-
Confidence            78999999 9999985  899999999999999984             455667888888888887665554443322 


Q ss_pred             cCccccCCCcCeEEEecCCCCCeecc-cCccccccCCEEEEec
Q 035891           88 PSLQSIFSNTPSLCLRNCHSLSSLSV-FTLASLRHLEALDMTN  129 (309)
Q Consensus        88 ~~l~~~l~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~  129 (309)
                            +++|+.|+++++ .+..++. ..+..+++|+.|++++
T Consensus        64 ------l~~L~~L~l~~N-~i~~~~~~~~l~~~~~L~~L~l~~   99 (124)
T d1dcea3          64 ------LPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQG   99 (124)
T ss_dssp             ------CSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTT
T ss_pred             ------ccccCeEECCCC-ccCCCCCchhhcCCCCCCEEECCC
Confidence                  234666666663 3333321 2344555566665555

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.08  E-value=7e-10  Score=94.93  Aligned_cols=65  Identities=31%  Similarity=0.261  Sum_probs=51.0

Q ss_pred             CCCCccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCccCCCCccEEeecCcccCCCC
Q 035891          175 LAPNLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKALPFPHLKELEVNLCPKLEKL  254 (309)
Q Consensus       175 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~L~i~~C~~L~~l  254 (309)
                      .+++|++|++++| .++.++                ..+++|+.|+++++ ++++++.   .+++|++|++++|+ ++++
T Consensus       282 ~~~~L~~L~Ls~N-~l~~lp----------------~~~~~L~~L~L~~N-~L~~l~~---~~~~L~~L~L~~N~-L~~l  339 (353)
T d1jl5a_         282 LPPSLEELNVSNN-KLIELP----------------ALPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYNP-LREF  339 (353)
T ss_dssp             CCTTCCEEECCSS-CCSCCC----------------CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CSSC
T ss_pred             cCCCCCEEECCCC-ccCccc----------------cccCCCCEEECCCC-cCCcccc---ccCCCCEEECcCCc-CCCC
Confidence            4689999999988 455553                24789999999986 7888874   35789999999996 9999


Q ss_pred             CCCCCCC
Q 035891          255 PFDCTSG  261 (309)
Q Consensus       255 p~~~~~~  261 (309)
                      |.....+
T Consensus       340 p~~~~~L  346 (353)
T d1jl5a_         340 PDIPESV  346 (353)
T ss_dssp             CCCCTTC
T ss_pred             Ccccccc
Confidence            9754443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.6e-11  Score=94.10  Aligned_cols=35  Identities=17%  Similarity=0.130  Sum_probs=15.3

Q ss_pred             CCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCC
Q 035891            6 NLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGS   42 (309)
Q Consensus         6 ~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~   42 (309)
                      +||.|++++| .++.+|. .+..+++|++|++++|.+
T Consensus        19 ~lr~L~L~~n-~I~~i~~-~~~~l~~L~~L~Ls~N~i   53 (162)
T d1a9na_          19 RDRELDLRGY-KIPVIEN-LGATLDQFDAIDFSDNEI   53 (162)
T ss_dssp             SCEEEECTTS-CCCSCCC-GGGGTTCCSEEECCSSCC
T ss_pred             cCcEEECCCC-CCCccCc-cccccccCCEEECCCCCC
Confidence            3444444444 4444443 133444444444444444

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.04  E-value=3.1e-10  Score=82.69  Aligned_cols=118  Identities=21%  Similarity=0.237  Sum_probs=82.3

Q ss_pred             CeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCceecccCccCCCC
Q 035891           98 PSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVTWLILAP  177 (309)
Q Consensus        98 ~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l~~l~~l~  177 (309)
                      +.|++++ +.++.+  +.+..+++|++|++++ +.++.++..+.           .+++|+.|++++|.++.++.+..++
T Consensus         1 R~L~Ls~-n~l~~l--~~l~~l~~L~~L~ls~-N~l~~lp~~~~-----------~l~~L~~L~l~~N~i~~l~~~~~l~   65 (124)
T d1dcea3           1 RVLHLAH-KDLTVL--CHLEQLLLVTHLDLSH-NRLRALPPALA-----------ALRCLEVLQASDNALENVDGVANLP   65 (124)
T ss_dssp             SEEECTT-SCCSSC--CCGGGGTTCCEEECCS-SCCCCCCGGGG-----------GCTTCCEEECCSSCCCCCGGGTTCS
T ss_pred             CEEEcCC-CCCCCC--cccccCCCCCEEECCC-CccCcchhhhh-----------hhhcccccccccccccccCcccccc
Confidence            3566777 345555  3577888899999987 67888765443           6889999999988777777788889


Q ss_pred             CccEEEEEcCccccccccccccCCcCcccccCCccCCccceeeccccccccccCCCcc----CCCCccEE
Q 035891          178 NLKHIEVYNCRYLDEIISLEKLGEVPSEEMQNLFPFARLESLSLYALGNLRSIYPKAL----PFPHLKEL  243 (309)
Q Consensus       178 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~----~~~~L~~L  243 (309)
                      +|++|+++++ .++++...           ..+..+++|+.|++++. .+...+....    .+|+|+.|
T Consensus        66 ~L~~L~l~~N-~i~~~~~~-----------~~l~~~~~L~~L~l~~N-~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          66 RLQELLLCNN-RLQQSAAI-----------QPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SCCEEECCSS-CCCSSSTT-----------GGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ccCeEECCCC-ccCCCCCc-----------hhhcCCCCCCEEECCCC-cCCcCccHHHHHHHHCcCcceE
Confidence            9999999876 34444210           24567889999999884 4555443221    46666655

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.04  E-value=3.2e-10  Score=89.28  Aligned_cols=55  Identities=13%  Similarity=0.033  Sum_probs=37.9

Q ss_pred             CcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEe
Q 035891            7 LKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQ   76 (309)
Q Consensus         7 Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~   76 (309)
                      .+.++.+++ .++.+|.+ +.  .++++|++++|.++.           ......++.+++|+.|++.++
T Consensus        10 ~~~v~Cs~~-~L~~iP~~-lp--~~l~~L~Ls~N~i~~-----------~~~~~~f~~l~~L~~L~L~~N   64 (192)
T d1w8aa_          10 GTTVDCTGR-GLKEIPRD-IP--LHTTELLLNDNELGR-----------ISSDGLFGRLPHLVKLELKRN   64 (192)
T ss_dssp             TTEEECTTS-CCSSCCSC-CC--TTCSEEECCSCCCCS-----------BCCSCSGGGCTTCCEEECCSS
T ss_pred             CCEEEEeCC-CcCccCCC-CC--CCCCEEEeCCCCCcc-----------cccccccCCCceEeeeecccc
Confidence            467888888 89999987 43  789999999999862           112233455666666665433

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=2.8e-11  Score=92.80  Aligned_cols=134  Identities=16%  Similarity=0.156  Sum_probs=98.8

Q ss_pred             CCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhcCCcCccccCCCc
Q 035891           18 IYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLLTSPSLQSIFSNT   97 (309)
Q Consensus        18 l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~~~~~l~~~l~~L   97 (309)
                      +...|.  +.++.+|++|++++|++.             .+......+++|+.|+++++....+..   ...    +++|
T Consensus         8 i~~~~~--~~n~~~lr~L~L~~n~I~-------------~i~~~~~~l~~L~~L~Ls~N~i~~l~~---~~~----l~~L   65 (162)
T d1a9na_           8 IEQAAQ--YTNAVRDRELDLRGYKIP-------------VIENLGATLDQFDAIDFSDNEIRKLDG---FPL----LRRL   65 (162)
T ss_dssp             HHTSCE--EECTTSCEEEECTTSCCC-------------SCCCGGGGTTCCSEEECCSSCCCEECC---CCC----CSSC
T ss_pred             HhhhHh--ccCcCcCcEEECCCCCCC-------------ccCccccccccCCEEECCCCCCCccCC---ccc----Ccch
Confidence            344554  578889999999999996             233334678999999998777665533   222    4479


Q ss_pred             CeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEc-CccCcccccCCCcccccCcceEEEeCceecccCc----
Q 035891           98 PSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEI-DYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVTW----  172 (309)
Q Consensus        98 ~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l~~----  172 (309)
                      +.|++++|. ++.++...+..+++|+.|++.+ +.+..++. ....          .+++|++|++++|.+...+.    
T Consensus        66 ~~L~ls~N~-i~~l~~~~~~~l~~L~~L~L~~-N~i~~~~~l~~l~----------~l~~L~~L~l~~N~i~~~~~~r~~  133 (162)
T d1a9na_          66 KTLLVNNNR-ICRIGEGLDQALPDLTELILTN-NSLVELGDLDPLA----------SLKSLTYLCILRNPVTNKKHYRLY  133 (162)
T ss_dssp             CEEECCSSC-CCEECSCHHHHCTTCCEEECCS-CCCCCGGGGGGGG----------GCTTCCEEECCSSGGGGSTTHHHH
T ss_pred             hhhhccccc-ccCCCccccccccccccceecc-ccccccccccccc----------cccccchhhcCCCccccccchHHH
Confidence            999999964 6777644456789999999998 56666542 2333          68999999999996666652    


Q ss_pred             -cCCCCCccEEEEE
Q 035891          173 -LILAPNLKHIEVY  185 (309)
Q Consensus       173 -l~~l~~L~~L~l~  185 (309)
                       +..+|+|++|+-.
T Consensus       134 ~i~~lp~L~~LD~~  147 (162)
T d1a9na_         134 VIYKVPQVRVLDFQ  147 (162)
T ss_dssp             HHHHCTTCSEETTE
T ss_pred             HHHHCCCcCeeCCC
Confidence             5678999998743

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.86  E-value=2.5e-11  Score=96.25  Aligned_cols=59  Identities=20%  Similarity=0.238  Sum_probs=37.7

Q ss_pred             CcEEecCCC-cCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchh
Q 035891            7 LKCLNLEYT-YRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAA   80 (309)
Q Consensus         7 Lr~L~l~~~-~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~   80 (309)
                      ++.+++.+. ..++.+|.+ ++.|++|++|++++|.+.             .+ .++..+++|+.|+++.+....
T Consensus        25 ~~~~~l~~~~~~i~~l~~s-l~~L~~L~~L~Ls~n~I~-------------~i-~~l~~l~~L~~L~Ls~N~i~~   84 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDAT-LSTLKACKHLALSTNNIE-------------KI-SSLSGMENLRILSLGRNLIKK   84 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHH-HHHTTTCCEEECSEEEES-------------CC-CCHHHHTTCCEEECCEEEECS
T ss_pred             cceeeeecccCchhhhhhH-HhcccccceeECcccCCC-------------Cc-ccccCCccccChhhccccccc
Confidence            445555543 235667776 788888888888887774             22 346677777777776655443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.81  E-value=7.1e-09  Score=81.31  Aligned_cols=80  Identities=13%  Similarity=0.249  Sum_probs=36.8

Q ss_pred             CcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCceecccC--cc
Q 035891           96 NTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVT--WL  173 (309)
Q Consensus        96 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l~--~l  173 (309)
                      +|+.|+++++ .+..++...+..+++|+.|++++ +.++.++...+.          .+++|++|++++|+++.++  ++
T Consensus        55 ~L~~L~L~~N-~i~~~~~~~~~~~~~L~~L~Ls~-N~l~~l~~~~F~----------~l~~L~~L~L~~N~l~~i~~~~f  122 (192)
T d1w8aa_          55 HLVKLELKRN-QLTGIEPNAFEGASHIQELQLGE-NKIKEISNKMFL----------GLHQLKTLNLYDNQISCVMPGSF  122 (192)
T ss_dssp             TCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCS-CCCCEECSSSST----------TCTTCCEEECCSSCCCEECTTSS
T ss_pred             eEeeeecccc-ccccccccccccccccceeeecc-ccccccCHHHHh----------CCCcccccccCCccccccCHHHh
Confidence            4555555442 22333323444445555555554 345555444433          4555555555555444443  23


Q ss_pred             CCCCCccEEEEEcC
Q 035891          174 ILAPNLKHIEVYNC  187 (309)
Q Consensus       174 ~~l~~L~~L~l~~c  187 (309)
                      ..+++|++|+++++
T Consensus       123 ~~l~~L~~l~L~~N  136 (192)
T d1w8aa_         123 EHLNSLTSLNLASN  136 (192)
T ss_dssp             TTCTTCCEEECTTC
T ss_pred             cCCccccccccccc
Confidence            34455555555443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.77  E-value=3.6e-11  Score=95.29  Aligned_cols=65  Identities=25%  Similarity=0.191  Sum_probs=47.3

Q ss_pred             CCCCCCcEEecCCCcCCCCCchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhh
Q 035891            2 KYLVNLKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAAL   81 (309)
Q Consensus         2 ~~L~~Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l   81 (309)
                      +.|.+|++|++++| .++.++.  +..|++|++|++++|.+..             ++.....+++|+.|++..+....+
T Consensus        45 ~~L~~L~~L~Ls~n-~I~~i~~--l~~l~~L~~L~Ls~N~i~~-------------i~~~~~~~~~L~~L~l~~N~i~~l  108 (198)
T d1m9la_          45 STLKACKHLALSTN-NIEKISS--LSGMENLRILSLGRNLIKK-------------IENLDAVADTLEELWISYNQIASL  108 (198)
T ss_dssp             HHTTTCCEEECSEE-EESCCCC--HHHHTTCCEEECCEEEECS-------------CSSHHHHHHHCCEEECSEEECCCH
T ss_pred             hcccccceeECccc-CCCCccc--ccCCccccChhhccccccc-------------cccccccccccccccccccccccc
Confidence            45889999999999 8999974  8999999999999998852             222223344566666665554444


Q ss_pred             h
Q 035891           82 H   82 (309)
Q Consensus        82 ~   82 (309)
                      .
T Consensus       109 ~  109 (198)
T d1m9la_         109 S  109 (198)
T ss_dssp             H
T ss_pred             c
Confidence            3

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=3.5e-07  Score=68.83  Aligned_cols=82  Identities=18%  Similarity=0.220  Sum_probs=55.2

Q ss_pred             CcCeEEEecCCCCCeecccCccccccCCEEEEecCCCCceEEcCccCcccccCCCcccccCcceEEEeCceecccCc-cC
Q 035891           96 NTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTNCKDLEEMEIDYAGEEVKRIRETHGFFSLHKVSIWGSKLRHVTW-LI  174 (309)
Q Consensus        96 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~l~~-l~  174 (309)
                      +|++|++.+.+.++.++...+..+++|+.|++++ +.+..++...+.          .+++|++|++++|+++.++. ..
T Consensus        32 ~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~-N~l~~i~~~~f~----------~l~~L~~L~Ls~N~l~~l~~~~~  100 (156)
T d2ifga3          32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVK-SGLRFVAPDAFH----------FTPRLSRLNLSFNALESLSWKTV  100 (156)
T ss_dssp             CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCS-SCCCEECTTGGG----------SCSCCCEEECCSSCCSCCCSTTT
T ss_pred             ccCeeecCCCccccccCchhhccccccCcceeec-cccCCccccccc----------ccccccceeccCCCCcccChhhh
Confidence            5666777665667777655677777888888877 567777666554          67788888888777666652 12


Q ss_pred             CCCCccEEEEEcCc
Q 035891          175 LAPNLKHIEVYNCR  188 (309)
Q Consensus       175 ~l~~L~~L~l~~c~  188 (309)
                      ...+|++|+|++++
T Consensus       101 ~~~~l~~L~L~~Np  114 (156)
T d2ifga3         101 QGLSLQELVLSGNP  114 (156)
T ss_dssp             CSCCCCEEECCSSC
T ss_pred             ccccccccccCCCc
Confidence            23467777777653

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=2.6e-07  Score=69.57  Aligned_cols=102  Identities=19%  Similarity=0.117  Sum_probs=66.4

Q ss_pred             CcEEecCCCcCCCCCchhhhcCCCCCceEEecccC-CCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhc
Q 035891            7 LKCLNLEYTYRIYKIPGQVISNLKMLEALRMFKCG-SSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLL   85 (309)
Q Consensus         7 Lr~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~-~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~   85 (309)
                      ...++.+++ .+..+|.. +..+++|++|++.++. +.            ......+..+++|+.|+++.+....+..-.
T Consensus        10 ~~~l~c~~~-~~~~~p~~-l~~l~~l~~L~l~~n~~l~------------~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~   75 (156)
T d2ifga3          10 SSGLRCTRD-GALDSLHH-LPGAENLTELYIENQQHLQ------------HLELRDLRGLGELRNLTIVKSGLRFVAPDA   75 (156)
T ss_dssp             SSCEECCSS-CCCTTTTT-SCSCSCCSEEECCSCSSCC------------EECGGGSCSCCCCSEEECCSSCCCEECTTG
T ss_pred             CCeEEecCC-CCccCccc-ccCccccCeeecCCCcccc------------ccCchhhccccccCcceeeccccCCccccc
Confidence            455677776 67777776 7788888888887654 53            233455777888888888766655543211


Q ss_pred             CCcCccccCCCcCeEEEecCCCCCeecccCccccccCCEEEEec
Q 035891           86 TSPSLQSIFSNTPSLCLRNCHSLSSLSVFTLASLRHLEALDMTN  129 (309)
Q Consensus        86 ~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~  129 (309)
                          +.+ +++|+.|++++ +.++.++...+.. .+|+.|++++
T Consensus        76 ----f~~-l~~L~~L~Ls~-N~l~~l~~~~~~~-~~l~~L~L~~  112 (156)
T d2ifga3          76 ----FHF-TPRLSRLNLSF-NALESLSWKTVQG-LSLQELVLSG  112 (156)
T ss_dssp             ----GGS-CSCCCEEECCS-SCCSCCCSTTTCS-CCCCEEECCS
T ss_pred             ----ccc-cccccceeccC-CCCcccChhhhcc-ccccccccCC
Confidence                111 34688888888 4566776444443 3688888887

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.24  E-value=2.2e-07  Score=79.31  Aligned_cols=36  Identities=19%  Similarity=0.034  Sum_probs=18.0

Q ss_pred             CCCCcEEecCCCcCCCC-----CchhhhcCCCCCceEEecccC
Q 035891            4 LVNLKCLNLEYTYRIYK-----IPGQVISNLKMLEALRMFKCG   41 (309)
Q Consensus         4 L~~Lr~L~l~~~~~l~~-----lp~~~i~~L~~L~~L~l~~~~   41 (309)
                      ...|+.|++++| .+..     +... +...++|+.|++.++.
T Consensus        30 ~~~l~~L~Ls~n-~i~~~~~~~l~~~-l~~~~~L~~l~l~~~~   70 (344)
T d2ca6a1          30 DDSVKEIVLSGN-TIGTEAARWLSEN-IASKKDLEIAEFSDIF   70 (344)
T ss_dssp             CSCCCEEECTTS-EECHHHHHHHHHT-TTTCTTCCEEECCSCC
T ss_pred             CCCCCEEECcCC-cCCHHHHHHHHHH-HHhCCCCCEEECCCCc
Confidence            345566666665 4432     2222 4455556666665543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.89  E-value=8.6e-07  Score=75.45  Aligned_cols=216  Identities=16%  Similarity=0.128  Sum_probs=131.3

Q ss_pred             CCCCCCCcEEecCCCcCCCCC----chh------hhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCce
Q 035891            1 LKYLVNLKCLNLEYTYRIYKI----PGQ------VISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNV   70 (309)
Q Consensus         1 l~~L~~Lr~L~l~~~~~l~~l----p~~------~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~   70 (309)
                      +...++|+.|+++++ .....    |..      .+..+++|++|++++|.+..        .....+...+...++|+.
T Consensus        55 l~~~~~L~~l~l~~~-~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~--------~~~~~l~~~l~~~~~L~~  125 (344)
T d2ca6a1          55 IASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP--------TAQEPLIDFLSKHTPLEH  125 (344)
T ss_dssp             TTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT--------TTHHHHHHHHHHCTTCCE
T ss_pred             HHhCCCCCEEECCCC-cccccccccchHHHHHHHHHhhCCCccccccccccccc--------ccccchhhhhcccccchh
Confidence            356789999999977 43322    221      25678999999999998752        111335567888999999


Q ss_pred             EEEEEecchh---------hhhhcCCcCccccCCCcCeEEEecCCCCCeecc----cCccccccCCEEEEecCCCCceEE
Q 035891           71 LTITLQSFAA---------LHRLLTSPSLQSIFSNTPSLCLRNCHSLSSLSV----FTLASLRHLEALDMTNCKDLEEME  137 (309)
Q Consensus        71 L~l~~~~~~~---------l~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~----~~l~~l~~L~~L~l~~~~~l~~l~  137 (309)
                      |++..+....         +.......... ..+.|+.+.+.++. +.....    ..+...+.|+.|++++| .+..-+
T Consensus       126 L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~-~~~~L~~l~l~~n~-i~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~g  202 (344)
T d2ca6a1         126 LYLHNNGLGPQAGAKIARALQELAVNKKAK-NAPPLRSIICGRNR-LENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEG  202 (344)
T ss_dssp             EECCSSCCHHHHHHHHHHHHHHHHHHHHHH-TCCCCCEEECCSSC-CTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHH
T ss_pred             eecccccccccccccccccccccccccccc-cCcccceeeccccc-ccccccccccchhhhhhhhcccccccc-cccccc
Confidence            9997665431         11110000000 12368888888743 332211    13456789999999985 444321


Q ss_pred             -----cCccCcccccCCCcccccCcceEEEeCceecc-----c-CccCCCCCccEEEEEcCccccccccccccCCcCccc
Q 035891          138 -----IDYAGEEVKRIRETHGFFSLHKVSIWGSKLRH-----V-TWLILAPNLKHIEVYNCRYLDEIISLEKLGEVPSEE  206 (309)
Q Consensus       138 -----~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~-----l-~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~  206 (309)
                           .....          ..++|+.|++++|.+..     + ..+...++|++|++++|. +.+.-...-      . 
T Consensus       203 ~~~~l~~~l~----------~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~-i~~~g~~~l------~-  264 (344)
T d2ca6a1         203 IEHLLLEGLA----------YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAV------V-  264 (344)
T ss_dssp             HHHHHHTTGG----------GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHH------H-
T ss_pred             cccchhhhhc----------chhhhcccccccccccccccccccccccccccchhhhhhcCc-cCchhhHHH------H-
Confidence                 11121          67899999999984322     2 145678999999999985 332100000      0 


Q ss_pred             ccC--CccCCccceeeccccccccc-----cCCCcc-CCCCccEEeecCc
Q 035891          207 MQN--LFPFARLESLSLYALGNLRS-----IYPKAL-PFPHLKELEVNLC  248 (309)
Q Consensus       207 ~~~--~~~~~~L~~L~L~~~~~L~~-----l~~~~~-~~~~L~~L~i~~C  248 (309)
                       ..  ....+.|++|+++++ .++.     +..... .+++|+.|++.++
T Consensus       265 -~~l~~~~~~~L~~L~ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~l~~N  312 (344)
T d2ca6a1         265 -DAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGN  312 (344)
T ss_dssp             -HHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred             -HHhhhccCCCCCEEECCCC-cCChHHHHHHHHHHHccCCCCCEEECCCC
Confidence             11  134578999999986 4643     222221 4688999999875

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=1.1e-05  Score=70.31  Aligned_cols=113  Identities=19%  Similarity=0.345  Sum_probs=75.5

Q ss_pred             CCcEEecCCCcCCCCCc-hhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchh--hh
Q 035891            6 NLKCLNLEYTYRIYKIP-GQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAA--LH   82 (309)
Q Consensus         6 ~Lr~L~l~~~~~l~~lp-~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~--l~   82 (309)
                      +|++||++++ +++... ..++..++++++|++.+|+++.        .....+...+..+++|+.|+++.+..+.  +.
T Consensus         3 ~l~~ld~~~~-~i~~~~~~~l~~~l~~l~~L~L~~~~i~~--------~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~   73 (460)
T d1z7xw1           3 DIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCGLTE--------ARCKDISSALRVNPALAELNLRSNELGDVGVH   73 (460)
T ss_dssp             EEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESSCCCH--------HHHHHHHHHHHTCTTCCEEECTTCCCHHHHHH
T ss_pred             CCCEEEeeCC-cCChHHHHHHHHhCCCCCEEEeCCCCCCH--------HHHHHHHHHHhcCCCCCEEECcCCcCChHHHH
Confidence            6899999998 887632 2247789999999999998861        0012344567889999999998665542  22


Q ss_pred             hhcCCcCccccCCCcCeEEEecCCCCCeecc----cCccccccCCEEEEecC
Q 035891           83 RLLTSPSLQSIFSNTPSLCLRNCHSLSSLSV----FTLASLRHLEALDMTNC  130 (309)
Q Consensus        83 ~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~----~~l~~l~~L~~L~l~~~  130 (309)
                      .+...  +....++|++|++++|. ++....    ..+..+++|++|+++++
T Consensus        74 ~l~~~--l~~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N  122 (460)
T d1z7xw1          74 CVLQG--LQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDN  122 (460)
T ss_dssp             HHHHT--TCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSS
T ss_pred             HHHHH--HhcCCCCCCEEECCCCC-ccccccccccchhhccccccccccccc
Confidence            22221  11012269999999975 444321    23567789999999874

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=6e-06  Score=62.23  Aligned_cols=64  Identities=13%  Similarity=0.028  Sum_probs=33.6

Q ss_pred             cCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecchhhhhhcCCcCccccCCCcCeEEEecC
Q 035891           27 SNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSFAALHRLLTSPSLQSIFSNTPSLCLRNC  105 (309)
Q Consensus        27 ~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~~~~~~~l~~~l~~L~~L~l~~~  105 (309)
                      .++++|++|++++|+++.+          ......++.+++|+.|+++++....+.++....     ..+|+.+++.++
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l----------~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~-----~~~L~~L~L~~N  125 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRL----------DDMSSIVQKAPNLKILNLSGNELKSERELDKIK-----GLKLEELWLDGN  125 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCC----------SGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHT-----TCCCSSCCCTTS
T ss_pred             HhCCCCCEeeCCCccccCC----------chhHHHHhhCCcccccccccCccccchhhhhhh-----ccccceeecCCC
Confidence            4566677777777766522          223344556666666666655555544432211     113555666554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.26  E-value=0.00036  Score=51.97  Aligned_cols=63  Identities=17%  Similarity=0.245  Sum_probs=45.8

Q ss_pred             CCCCCcEEecCCCcCCCCCch--hhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEecc
Q 035891            3 YLVNLKCLNLEYTYRIYKIPG--QVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQSF   78 (309)
Q Consensus         3 ~L~~Lr~L~l~~~~~l~~lp~--~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~~   78 (309)
                      ++.+|++|++++| .++.++.  +.+..+++|++|++++|.+..+           .....++ ..+|+.+++.++..
T Consensus        63 ~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l-----------~~l~~l~-~~~L~~L~L~~Npl  127 (162)
T d1koha1          63 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSE-----------RELDKIK-GLKLEELWLDGNSL  127 (162)
T ss_dssp             HCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTTSCCCCG-----------GGHHHHT-TCCCSSCCCTTSTT
T ss_pred             hCCCCCEeeCCCc-cccCCchhHHHHhhCCcccccccccCccccc-----------hhhhhhh-ccccceeecCCCCc
Confidence            4788999999999 8987753  2367899999999999999732           1122333 34688888865543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.0012  Score=56.87  Aligned_cols=39  Identities=13%  Similarity=0.123  Sum_probs=28.2

Q ss_pred             CCCCCcEEecCCCcCCCC-----CchhhhcCCCCCceEEecccCCC
Q 035891            3 YLVNLKCLNLEYTYRIYK-----IPGQVISNLKMLEALRMFKCGSS   43 (309)
Q Consensus         3 ~L~~Lr~L~l~~~~~l~~-----lp~~~i~~L~~L~~L~l~~~~~~   43 (309)
                      .++++|.|+|++| .++.     ++.. +..+++|++|++++|.+.
T Consensus        25 ~l~~l~~L~L~~~-~i~~~~~~~l~~~-L~~~~~L~~LdLs~N~i~   68 (460)
T d1z7xw1          25 LLQQCQVVRLDDC-GLTEARCKDISSA-LRVNPALAELNLRSNELG   68 (460)
T ss_dssp             HHTTCSEEEEESS-CCCHHHHHHHHHH-HHTCTTCCEEECTTCCCH
T ss_pred             hCCCCCEEEeCCC-CCCHHHHHHHHHH-HhcCCCCCEEECcCCcCC
Confidence            4577888888888 6663     3442 677888888888888774

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.45  E-value=0.0037  Score=46.44  Aligned_cols=91  Identities=22%  Similarity=0.187  Sum_probs=51.1

Q ss_pred             CCCCCcEEecCCCcCCCC-----CchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEec
Q 035891            3 YLVNLKCLNLEYTYRIYK-----IPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQS   77 (309)
Q Consensus         3 ~L~~Lr~L~l~~~~~l~~-----lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~   77 (309)
                      +-++|+.|+|+++..++.     +-. .+...++|++|++++|.+..        .....+...+...+.|+.|+++.+.
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~-~L~~n~~L~~L~Ls~n~l~~--------~~~~~la~~L~~n~~L~~L~L~~n~   83 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIE-AACNSKHIEKFSLANTAISD--------SEARGLIELIETSPSLRVLNVESNF   83 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHH-HHTTCSCCCEEECTTSCCBH--------HHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHH-HHhhCCccceeeccccccch--------hHHHHHhhhhhhcccccceeeehhh
Confidence            456788888887534442     222 25677788888888887741        0012233455666778888887655


Q ss_pred             chh--hhhhcCCcCccccCCCcCeEEEecC
Q 035891           78 FAA--LHRLLTSPSLQSIFSNTPSLCLRNC  105 (309)
Q Consensus        78 ~~~--l~~~~~~~~l~~~l~~L~~L~l~~~  105 (309)
                      ...  ...+....  .. -+.|++|++.++
T Consensus        84 i~~~g~~~l~~aL--~~-n~sL~~L~l~~n  110 (167)
T d1pgva_          84 LTPELLARLLRST--LV-TQSIVEFKADNQ  110 (167)
T ss_dssp             CCHHHHHHHHHHT--TT-TCCCSEEECCCC
T ss_pred             cchHHHHHHHHHH--Hh-CCcCCEEECCCC
Confidence            442  22222111  10 225777777664

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.51  E-value=0.0073  Score=44.62  Aligned_cols=66  Identities=15%  Similarity=0.099  Sum_probs=37.7

Q ss_pred             CCCCCcEEecCCCcCCCC-----CchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEec
Q 035891            3 YLVNLKCLNLEYTYRIYK-----IPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQS   77 (309)
Q Consensus         3 ~L~~Lr~L~l~~~~~l~~-----lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~~   77 (309)
                      +-++|++|+++++..++.     +-. .+...++|++|++++|.+..        .....+...+...++++.+++..+.
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~-al~~n~~L~~L~Ls~n~l~~--------~~~~~L~~~l~~~~~l~~l~l~~~~   85 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAE-ALKTNTYVKKFSIVGTRSND--------PVAFALAEMLKVNNTLKSLNVESNF   85 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHH-HHTTCCSCCEEECTTSCCCH--------HHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHH-HHhcCCccCeeeccCCcccH--------HHHHHHHHHHhhcccchhhhhcccc
Confidence            346778888876424432     222 24567778888888877651        0011233445556777777765443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=92.33  E-value=0.02  Score=42.28  Aligned_cols=66  Identities=14%  Similarity=0.001  Sum_probs=48.3

Q ss_pred             CCCCCCcEEecCCCcCCCC-----CchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEEEe
Q 035891            2 KYLVNLKCLNLEYTYRIYK-----IPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTITLQ   76 (309)
Q Consensus         2 ~~L~~Lr~L~l~~~~~l~~-----lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~~~   76 (309)
                      ..-++|++|++++| .+..     +.. ++...+.|++|++++|.+..        .+...+...+..-++|+.|++.++
T Consensus        41 ~~n~~L~~L~Ls~n-~l~~~~~~~la~-~L~~n~~L~~L~L~~n~i~~--------~g~~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          41 CNSKHIEKFSLANT-AISDSEARGLIE-LIETSPSLRVLNVESNFLTP--------ELLARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             TTCSCCCEEECTTS-CCBHHHHTTHHH-HHHHCSSCCEEECCSSBCCH--------HHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             hhCCccceeecccc-ccchhHHHHHhh-hhhhcccccceeeehhhcch--------HHHHHHHHHHHhCCcCCEEECCCC
Confidence            34578999999999 7763     333 36677899999999998861        111334567778899999999765


Q ss_pred             c
Q 035891           77 S   77 (309)
Q Consensus        77 ~   77 (309)
                      .
T Consensus       111 ~  111 (167)
T d1pgva_         111 R  111 (167)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=84.24  E-value=0.21  Score=36.19  Aligned_cols=63  Identities=25%  Similarity=0.175  Sum_probs=44.0

Q ss_pred             CCCCCCcEEecCCCcCCCC-----CchhhhcCCCCCceEEecccCCCCccCCccccCCcccchhhhhccCCCceEEEE
Q 035891            2 KYLVNLKCLNLEYTYRIYK-----IPGQVISNLKMLEALRMFKCGSSKQESDSILFGGSLVLVEELLGLERLNVLTIT   74 (309)
Q Consensus         2 ~~L~~Lr~L~l~~~~~l~~-----lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~L~~L~l~   74 (309)
                      ....+|++|++++| .++.     +-. ++...++++.+++++|.+..        .+...+...+...++|+.+++.
T Consensus        43 ~~n~~L~~L~Ls~n-~l~~~~~~~L~~-~l~~~~~l~~l~l~~~~~~~--------~g~~~l~~~l~~~~~L~~l~L~  110 (166)
T d1io0a_          43 KTNTYVKKFSIVGT-RSNDPVAFALAE-MLKVNNTLKSLNVESNFISG--------SGILALVEALQSNTSLIELRID  110 (166)
T ss_dssp             TTCCSCCEEECTTS-CCCHHHHHHHHH-HHHHCSSCCEEECCSSCCCH--------HHHHHHHHGGGGCSSCCEEECC
T ss_pred             hcCCccCeeeccCC-cccHHHHHHHHH-HHhhcccchhhhhccccccc--------hhHHHHHHHHHhCccccEEeec
Confidence            45689999999999 7764     333 36778999999999988861        1112344566667777776664