Citrus Sinensis ID: 035892

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MFANLFHLHILLHMHAGQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVYAPGWRQNFSTRDFAELYNLGPPVAAVYFNCQRESGSGGRPSDDEIHTCLI
Secondary Structure (PSIPRED)
cEEEccccccccccccccEEEEccccccccccccEEEEEEEEccccccccccccccccHHHHHHHccccccEEEEEEEccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHcccEEEEcccccccccHHHHHHHHHHccccccEccccccccccHHHHHHHHcccccEEEEEEEccccccccccccHHHHHHHcc
Coil and Loop (DISEMBL)
MFANLFHLHILLHMHAgqeivnyesprptmgiHRFVFVLFRQlgrqtvyapgwrqnfstrdfaelynlgppvaAVYFNcqresgsggrpsddeihtcli
Flexible Loop (DISEMBL)
MFANLFHLHILLHMHAGQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVYAPGWRQNFSTRDFAELYNLGPPVAAVYFNCQResgsggrpsddeihtcli
Low Complexity Region (SEG)
MFANLFHLHILLHMHAGQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVYAPGWRQNFSTRDFAELYNLGPPVAAVYFNCQRESGSGGRPSDDEIHTCLI
Disordered region (IsUnstruct)
**ANLFHLHILLHMHAGQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVYAPGWRQNFSTRDFAELYNLGPPVAAVYFNCQ*******************
Disordered Region (DISOPRED)
MFANLFHLHILLHMHAGQEIVNYESPRPTMGIHRFVFVLFR**************NFSTRDFAELYNLGPPVAAVYFNC*RE************HTCLI
Disordered Region (DISEMBL)
MFANLFHLHILLHMHAGQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVYAPGWRQNFSTRDFAELYNLGPPVAAVYFNCQR***********EIHTCLI
Disordered Region (DISPRO)
MFANLFHLHILLHMHAGQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVYAPGWRQNFSTRDFAELYNLGPPVAAVYFNCQR**********DEI**CLI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFANLFHLHILLHMHAGQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVYAPGWRQNFSTRDFAELYNLGPPVAAVYFNCQRESGSGGRPSDDEIHTCLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	99	2.2.26 [Sep-21-2011]
Q93WI9	179	Protein HEADING DATE 3A O	yes	no	0.727	0.402	0.875	4e-33
Q8VWH2	178	Protein HEADING DATE 3B O	no	no	0.727	0.404	0.875	1e-32
Q9SXZ2	175	Protein FLOWERING LOCUS T	yes	no	0.727	0.411	0.805	1e-29
Q9S7R5	175	Protein TWIN SISTER of FT	no	no	0.727	0.411	0.791	2e-28
Q9XH43	175	CEN-like protein 2 OS=Nic	N/A	no	0.727	0.411	0.630	1e-18
O82088	175	Protein SELF-PRUNING OS=S	N/A	no	0.727	0.411	0.589	6e-18
Q9XH42	175	CEN-like protein 4 OS=Nic	N/A	no	0.727	0.411	0.589	2e-17
Q9ZNV5	175	Protein CENTRORADIALIS-li	no	no	0.727	0.411	0.547	5e-17
Q9XH44	174	CEN-like protein 1 OS=Nic	N/A	no	0.727	0.413	0.541	9e-17
Q9FIT4	177	Protein BROTHER of FT and	no	no	0.747	0.418	0.56	9e-17

>sp|Q93WI9|HD3A_ORYSJ Protein HEADING DATE 3A OS=Oryza sativa subsp. japonica GN=HD3A PE=1 SV=1

 Score =  139 bits (351), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 63/72 (87%), Positives = 69/72 (95%)

Query: 17  GQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVYAPGWRQNFSTRDFAELYNLGPPVAAVY 76
           GQE++ YESPRPTMGIHR VFVLF+QLGRQTVYAPGWRQNF+T+DFAELYNLG PVAAVY
Sbjct: 104 GQEVMCYESPRPTMGIHRLVFVLFQQLGRQTVYAPGWRQNFNTKDFAELYNLGSPVAAVY 163

Query: 77  FNCQRESGSGGR 88
           FNCQRE+GSGGR
Sbjct: 164 FNCQREAGSGGR 175

Probable mobile flower-promoting signal (florigen) that moves from the leaf to the shoot apical meristem (SAM) and induces flowering. Promotes the transition from vegetative growth to flowering downstream of HD1 and EHD1 under short day (SD) conditions. Acts upstream of MADS14 and MADS15.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8VWH2|HD3B_ORYSJ Protein HEADING DATE 3B OS=Oryza sativa subsp. japonica GN=HD3B PE=2 SV=1

 Score =  138 bits (347), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 63/72 (87%), Positives = 68/72 (94%)

Query: 17  GQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVYAPGWRQNFSTRDFAELYNLGPPVAAVY 76
           GQE++ YESPRPTMGIHR VFVLF+QLGRQTVYAPGWRQNFSTR+FAELYNLG PVA VY
Sbjct: 103 GQEVMCYESPRPTMGIHRLVFVLFQQLGRQTVYAPGWRQNFSTRNFAELYNLGSPVATVY 162

Query: 77  FNCQRESGSGGR 88
           FNCQRE+GSGGR
Sbjct: 163 FNCQREAGSGGR 174

Probable mobile flower-promoting signal (florigen) that moves from the leaf to the shoot apical meristem (SAM) and induces flowering. Promotes the transition from vegetative growth to flowering under long day (LD) conditions. Acts upstream of MADS14 and MADS15. May also participate in the promotion of flowering under short day (SD) conditions.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SXZ2|FT_ARATH Protein FLOWERING LOCUS T OS=Arabidopsis thaliana GN=FT PE=1 SV=2

 Score =  128 bits (321), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 58/72 (80%), Positives = 65/72 (90%)

Query: 17  GQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVYAPGWRQNFSTRDFAELYNLGPPVAAVY 76
           G EIV YE+P PT GIHR VF+LFRQLGRQTVYAPGWRQNF+TR+FAE+YNLG PVAAV+
Sbjct: 102 GNEIVCYENPSPTAGIHRVVFILFRQLGRQTVYAPGWRQNFNTREFAEIYNLGLPVAAVF 161

Query: 77  FNCQRESGSGGR 88
           +NCQRESG GGR
Sbjct: 162 YNCQRESGCGGR 173

Probable component of the mobile flower-promoting signal (floral stimulus or florigen). Promotes the transition from vegetative growth to flowering. Required for 'SEPALLATA3' (SEP3) and 'FRUITFULL' (FUL) accumulation in mature rosette leaves. Seems to acts in parallel with 'LEAFY' to induce flowering by regulating 'APETALA1'. May play a role in both the autonomous and the long-day flowering pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S7R5|TSF_ARATH Protein TWIN SISTER of FT OS=Arabidopsis thaliana GN=TSF PE=2 SV=1

 Score =  124 bits (310), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 57/72 (79%), Positives = 62/72 (86%)

Query: 17  GQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVYAPGWRQNFSTRDFAELYNLGPPVAAVY 76
           G E+V YESPRP  GIHR V VLFRQLGRQTVYAPGWRQ F+TR+FAE+YNLG PVAA Y
Sbjct: 102 GNEVVCYESPRPPSGIHRIVLVLFRQLGRQTVYAPGWRQQFNTREFAEIYNLGLPVAASY 161

Query: 77  FNCQRESGSGGR 88
           FNCQRE+G GGR
Sbjct: 162 FNCQRENGCGGR 173

May form complexes with phosphorylated ligands by interfering with kinases and their effectors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XH43|CET2_TOBAC CEN-like protein 2 OS=Nicotiana tabacum GN=CET2 PE=2 SV=1

 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/73 (63%), Positives = 54/73 (73%), Gaps = 1/73 (1%)

Query: 17  GQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVY-APGWRQNFSTRDFAELYNLGPPVAAV 75
           G+EIV YE PRP +GIHRFVF+LF+Q  RQTV  AP  R  F+TR FAE   LG PVAAV
Sbjct: 103 GKEIVGYEMPRPNIGIHRFVFLLFKQKKRQTVLTAPLSRDRFNTRKFAEENELGSPVAAV 162

Query: 76  YFNCQRESGSGGR 88
           +FNCQRE+ +  R
Sbjct: 163 FFNCQRETAARRR 175

May form complexes with phosphorylated ligands by interfering with kinases and their effectors.

Nicotiana tabacum (taxid: 4097)

>sp|O82088|SELFP_SOLLC Protein SELF-PRUNING OS=Solanum lycopersicum GN=SP PE=2 SV=1

 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 43/73 (58%), Positives = 54/73 (73%), Gaps = 1/73 (1%)

Query: 17  GQEIVNYESPRPTMGIHRFVFVLFRQLGRQTV-YAPGWRQNFSTRDFAELYNLGPPVAAV 75
           G+E+V YE PRP +GIHRFVF+LF+Q  RQT+  AP  R  FS+R F+E   LG PVAAV
Sbjct: 103 GREVVGYEMPRPNIGIHRFVFLLFKQKKRQTISSAPVSRDQFSSRKFSEENELGSPVAAV 162

Query: 76  YFNCQRESGSGGR 88
           +FNCQRE+ +  R
Sbjct: 163 FFNCQRETAARRR 175

Not known. In plants homozygous for the recessive allele of the SP gene, sympodial segments develop progressively fewer nodes until the shoot is terminated by two consecutive. inflorescences.

Solanum lycopersicum (taxid: 4081)

>sp|Q9XH42|CET4_TOBAC CEN-like protein 4 OS=Nicotiana tabacum GN=CET4 PE=2 SV=1

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/73 (58%), Positives = 53/73 (72%), Gaps = 1/73 (1%)

Query: 17  GQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVY-APGWRQNFSTRDFAELYNLGPPVAAV 75
           G+EIV YE PRP +GIHRFVF+LF+Q  RQT+  AP  R  F+TR F+E   LG PVAA 
Sbjct: 103 GREIVGYEMPRPNIGIHRFVFLLFKQKKRQTLLSAPLSRDRFNTRKFSEENELGSPVAAA 162

Query: 76  YFNCQRESGSGGR 88
           +FNCQRE+ +  R
Sbjct: 163 FFNCQRETAARRR 175

May form complexes with phosphorylated ligands by interfering with kinases and their effectors.

Nicotiana tabacum (taxid: 4097)

>sp|Q9ZNV5|CEN_ARATH Protein CENTRORADIALIS-like OS=Arabidopsis thaliana GN=CEN PE=2 SV=1

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 40/73 (54%), Positives = 55/73 (75%), Gaps = 1/73 (1%)

Query: 17  GQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVYA-PGWRQNFSTRDFAELYNLGPPVAAV 75
           G+EI+ YE PRP +GIHRFV++LF+Q  R +V + P +R  F+TR+FA   +LG PVAAV
Sbjct: 103 GKEIIGYEMPRPNIGIHRFVYLLFKQTRRGSVVSVPSYRDQFNTREFAHENDLGLPVAAV 162

Query: 76  YFNCQRESGSGGR 88
           +FNCQRE+ +  R
Sbjct: 163 FFNCQRETAARRR 175

May form complexes with phosphorylated ligands by interfering with kinases and their effectors (By similarity). Can substitute for TERMINAL FLOWER 1 (in vitro).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XH44|CET1_TOBAC CEN-like protein 1 OS=Nicotiana tabacum GN=CET1 PE=2 SV=1

 Score = 85.5 bits (210), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 39/72 (54%), Positives = 52/72 (72%)

Query: 17  GQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVYAPGWRQNFSTRDFAELYNLGPPVAAVY 76
           G+EIV+YESP+P +GIHR+V +L++Q GRQTV     R +F+TR +     LG PVAAVY
Sbjct: 103 GREIVSYESPKPVIGIHRYVLLLYKQSGRQTVKPAATRDHFNTRRYTAENGLGSPVAAVY 162

Query: 77  FNCQRESGSGGR 88
           FN QRE+ +  R
Sbjct: 163 FNAQRETAARRR 174

May form complexes with phosphorylated ligands by interfering with kinases and their effectors.

Nicotiana tabacum (taxid: 4097)

>sp|Q9FIT4|BFT_ARATH Protein BROTHER of FT and TFL 1 OS=Arabidopsis thaliana GN=BFT PE=3 SV=1

 Score = 85.5 bits (210), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 52/75 (69%), Gaps = 1/75 (1%)

Query: 17  GQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVY-APGWRQNFSTRDFAELYNLGPPVAAV 75
           G+EIV YE+P+P  GIHR+VF LF+Q GRQ V  AP  R+ F+T  F+  + L  PVAAV
Sbjct: 102 GREIVRYETPKPVAGIHRYVFALFKQRGRQAVKAAPETRECFNTNAFSSYFGLSQPVAAV 161

Query: 76  YFNCQRESGSGGRPS 90
           YFN QRE+    RPS
Sbjct: 162 YFNAQRETAPRRRPS 176

May form complexes with phosphorylated ligands by interfering with kinases and their effectors.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
4903139	177	CiFT [Citrus unshiu]	0.737	0.412	1.0	5e-37
166850556	177	CTRSFT1-like protein [Citrus trifoliata]	0.737	0.412	1.0	5e-37
164457875	177	flowering locus T [Citrus unshiu]	0.737	0.412	0.986	3e-36
164457877	177	flowering locus T [Citrus unshiu]	0.727	0.406	0.986	6e-36
28200390	177	SP3D [Solanum lycopersicum]	0.727	0.406	0.944	3e-33
348499908	176	flowering locus T-like protein [Eucalypt	0.727	0.409	0.930	6e-33
345500376	174	flowering locus T [Pyrus pyrifolia] gi|4	0.727	0.413	0.944	7e-33
221048110	174	flowering locus T [Malus x domestica] gi	0.727	0.413	0.944	8e-33
302140575	174	flowering locus T-like protein [Gossypiu	0.727	0.413	0.930	9e-33
242092038	179	hypothetical protein SORBIDRAFT_10g00394	0.727	0.402	0.902	9e-33

>gi|4903139|dbj|BAA77836.1| CiFT [Citrus unshiu]

 Score =  158 bits (399), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 73/73 (100%), Positives = 73/73 (100%)

Query: 17  GQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVYAPGWRQNFSTRDFAELYNLGPPVAAVY 76
           GQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVYAPGWRQNFSTRDFAELYNLGPPVAAVY
Sbjct: 102 GQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVYAPGWRQNFSTRDFAELYNLGPPVAAVY 161

Query: 77  FNCQRESGSGGRP 89
           FNCQRESGSGGRP
Sbjct: 162 FNCQRESGSGGRP 174

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|166850556|gb|ABY91244.1| CTRSFT1-like protein [Citrus trifoliata]

 Score =  157 bits (398), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 73/73 (100%), Positives = 73/73 (100%)

Query: 17  GQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVYAPGWRQNFSTRDFAELYNLGPPVAAVY 76
           GQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVYAPGWRQNFSTRDFAELYNLGPPVAAVY
Sbjct: 102 GQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVYAPGWRQNFSTRDFAELYNLGPPVAAVY 161

Query: 77  FNCQRESGSGGRP 89
           FNCQRESGSGGRP
Sbjct: 162 FNCQRESGSGGRP 174

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|164457875|dbj|BAF96644.1| flowering locus T [Citrus unshiu]

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 72/73 (98%), Positives = 72/73 (98%)

Query: 17  GQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVYAPGWRQNFSTRDFAELYNLGPPVAAVY 76
           GQEIVNYESP PTMGIHRFVFVLFRQLGRQTVYAPGWRQNFSTRDFAELYNLGPPVAAVY
Sbjct: 102 GQEIVNYESPSPTMGIHRFVFVLFRQLGRQTVYAPGWRQNFSTRDFAELYNLGPPVAAVY 161

Query: 77  FNCQRESGSGGRP 89
           FNCQRESGSGGRP
Sbjct: 162 FNCQRESGSGGRP 174

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|164457877|dbj|BAF96645.1| flowering locus T [Citrus unshiu]

 Score =  154 bits (390), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 71/72 (98%), Positives = 72/72 (100%)

Query: 17  GQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVYAPGWRQNFSTRDFAELYNLGPPVAAVY 76
           GQ+IVNYESPRPTMGIHRFVFVLFRQLGRQTVYAPGWRQNFSTRDFAELYNLGPPVAAVY
Sbjct: 102 GQDIVNYESPRPTMGIHRFVFVLFRQLGRQTVYAPGWRQNFSTRDFAELYNLGPPVAAVY 161

Query: 77  FNCQRESGSGGR 88
           FNCQRESGSGGR
Sbjct: 162 FNCQRESGSGGR 173

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|28200390|gb|AAO31792.1| SP3D [Solanum lycopersicum]

 Score =  145 bits (366), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 68/72 (94%), Positives = 71/72 (98%)

Query: 17  GQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVYAPGWRQNFSTRDFAELYNLGPPVAAVY 76
           GQEIV+YESPRP+MGIHRFVFVLFRQLGRQTVYAPGWRQNF+TRDFAELYNLG PVAAVY
Sbjct: 101 GQEIVSYESPRPSMGIHRFVFVLFRQLGRQTVYAPGWRQNFNTRDFAELYNLGLPVAAVY 160

Query: 77  FNCQRESGSGGR 88
           FNCQRESGSGGR
Sbjct: 161 FNCQRESGSGGR 172

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|348499908|gb|AEP69110.1| flowering locus T-like protein [Eucalyptus globulus]

 Score =  144 bits (363), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 67/72 (93%), Positives = 70/72 (97%)

Query: 17  GQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVYAPGWRQNFSTRDFAELYNLGPPVAAVY 76
           GQEIV YESPRP+MGIHRFVFVLFRQLGRQTVYAPGWRQNF+TRDFAELYNLG PVAA+Y
Sbjct: 103 GQEIVCYESPRPSMGIHRFVFVLFRQLGRQTVYAPGWRQNFNTRDFAELYNLGSPVAALY 162

Query: 77  FNCQRESGSGGR 88
           FNCQRESGSGGR
Sbjct: 163 FNCQRESGSGGR 174

Source: Eucalyptus globulus

Species: Eucalyptus globulus

Genus: Eucalyptus

Family: Myrtaceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|345500376|dbj|BAK74837.1| flowering locus T [Pyrus pyrifolia] gi|440546388|dbj|BAJ11577.3| flowering locus T [Pyrus pyrifolia var. culta]

 Score =  144 bits (363), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 68/72 (94%), Positives = 70/72 (97%)

Query: 17  GQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVYAPGWRQNFSTRDFAELYNLGPPVAAVY 76
           GQEIV YESPRPT+GIHRFVFVLFRQLGRQTVYAPGWRQNF+TRDFAELYNLG PVAAVY
Sbjct: 101 GQEIVCYESPRPTVGIHRFVFVLFRQLGRQTVYAPGWRQNFNTRDFAELYNLGLPVAAVY 160

Query: 77  FNCQRESGSGGR 88
           FNCQRESGSGGR
Sbjct: 161 FNCQRESGSGGR 172

Source: Pyrus pyrifolia

Species: Pyrus pyrifolia

Genus: Pyrus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|221048110|gb|ACL98164.1| flowering locus T [Malus x domestica] gi|289526315|dbj|BAI77728.1| flowering locus T like protein [Malus x domestica] gi|289526317|dbj|BAI77729.1| flowering locus T like protein [Malus x domestica] gi|311213980|gb|ADP69290.1| FT-like protein 2 [Malus x domestica]

 Score =  144 bits (362), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 68/72 (94%), Positives = 70/72 (97%)

Query: 17  GQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVYAPGWRQNFSTRDFAELYNLGPPVAAVY 76
           GQEIV YESPRPT+GIHRFVFVLFRQLGRQTVYAPGWRQNF+TRDFAELYNLG PVAAVY
Sbjct: 101 GQEIVCYESPRPTVGIHRFVFVLFRQLGRQTVYAPGWRQNFNTRDFAELYNLGLPVAAVY 160

Query: 77  FNCQRESGSGGR 88
           FNCQRESGSGGR
Sbjct: 161 FNCQRESGSGGR 172

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302140575|gb|ADK95113.1| flowering locus T-like protein [Gossypium hirsutum] gi|363498047|gb|AEW24444.1| flowering locus T-like protein 1 [Gossypium barbadense]

 Score =  144 bits (362), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 67/72 (93%), Positives = 70/72 (97%)

Query: 17  GQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVYAPGWRQNFSTRDFAELYNLGPPVAAVY 76
           GQE+V YESPRPT+GIHRFVFVLFRQLGRQTVYAPGWRQNF+TRDFAELYNLG PVAAVY
Sbjct: 101 GQEVVCYESPRPTVGIHRFVFVLFRQLGRQTVYAPGWRQNFNTRDFAELYNLGLPVAAVY 160

Query: 77  FNCQRESGSGGR 88
           FNCQRESGSGGR
Sbjct: 161 FNCQRESGSGGR 172

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242092038|ref|XP_002436509.1| hypothetical protein SORBIDRAFT_10g003940 [Sorghum bicolor] gi|241914732|gb|EER87876.1| hypothetical protein SORBIDRAFT_10g003940 [Sorghum bicolor]

 Score =  144 bits (362), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 65/72 (90%), Positives = 70/72 (97%)

Query: 17  GQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVYAPGWRQNFSTRDFAELYNLGPPVAAVY 76
           GQE++ YESPRPTMGIHRFV VLF+QLGRQTVYAPGWRQNF+TRDFAELYNLGPPVAAVY
Sbjct: 104 GQEVICYESPRPTMGIHRFVLVLFQQLGRQTVYAPGWRQNFNTRDFAELYNLGPPVAAVY 163

Query: 77  FNCQRESGSGGR 88
           FNCQRE+GSGGR
Sbjct: 164 FNCQREAGSGGR 175

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
UNIPROTKB|Q93WI9	179	HD3A "Protein HEADING DATE 3A"	0.727	0.402	0.875	6e-32
UNIPROTKB|Q93WM7	179	Hd3a "Hd3a protein" [Oryza sat	0.727	0.402	0.875	6e-32
UNIPROTKB|Q8VWH2	178	HD3B "Protein HEADING DATE 3B"	0.727	0.404	0.875	1.3e-31
TAIR|locus:2034168	175	FT "AT1G65480" [Arabidopsis th	0.727	0.411	0.805	5.6e-29
TAIR|locus:2005521	175	TSF "AT4G20370" [Arabidopsis t	0.727	0.411	0.791	6.4e-28
UNIPROTKB|Q9XGS5	173	Fdr2 "Cen-like protein FDR2" [	0.727	0.416	0.597	1.9e-19
UNIPROTKB|Q9XGS4	173	Fdr1 "Cen-like protein FDR1" [	0.727	0.416	0.611	6.5e-19
UNIPROTKB|Q6ESF8	173	P0605D08.14 "Os02g0531600 prot	0.727	0.416	0.625	1.7e-18
TAIR|locus:2038643	175	ATC "centroradialis" [Arabidop	0.727	0.411	0.547	3.2e-17
TAIR|locus:2174058	177	BFT "brother of FT and TFL1" [	0.747	0.418	0.56	4.1e-17

UNIPROTKB|Q93WI9 HD3A "Protein HEADING DATE 3A" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 63/72 (87%), Positives = 69/72 (95%)

Query:    17 GQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVYAPGWRQNFSTRDFAELYNLGPPVAAVY 76
             GQE++ YESPRPTMGIHR VFVLF+QLGRQTVYAPGWRQNF+T+DFAELYNLG PVAAVY
Sbjct:   104 GQEVMCYESPRPTMGIHRLVFVLFQQLGRQTVYAPGWRQNFNTKDFAELYNLGSPVAAVY 163

Query:    77 FNCQRESGSGGR 88
             FNCQRE+GSGGR
Sbjct:   164 FNCQREAGSGGR 175

GO:0008429 "phosphatidylethanolamine binding" evidence=ISS

GO:0009909 "regulation of flower development" evidence=IMP

GO:0010229 "inflorescence development" evidence=IMP

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0048572 "short-day photoperiodism" evidence=IMP

GO:0048575 "short-day photoperiodism, flowering" evidence=IMP

UNIPROTKB|Q93WM7 Hd3a "Hd3a protein" [Oryza sativa Indica Group (taxid:39946)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 63/72 (87%), Positives = 69/72 (95%)

Query:    17 GQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVYAPGWRQNFSTRDFAELYNLGPPVAAVY 76
             GQE++ YESPRPTMGIHR VFVLF+QLGRQTVYAPGWRQNF+T+DFAELYNLG PVAAVY
Sbjct:   104 GQEVMCYESPRPTMGIHRLVFVLFQQLGRQTVYAPGWRQNFNTKDFAELYNLGSPVAAVY 163

Query:    77 FNCQRESGSGGR 88
             FNCQRE+GSGGR
Sbjct:   164 FNCQREAGSGGR 175

GO:0008429 "phosphatidylethanolamine binding" evidence=ISS

GO:0010229 "inflorescence development" evidence=IMP

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0048572 "short-day photoperiodism" evidence=IMP

UNIPROTKB|Q8VWH2 HD3B "Protein HEADING DATE 3B" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 63/72 (87%), Positives = 68/72 (94%)

Query:    17 GQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVYAPGWRQNFSTRDFAELYNLGPPVAAVY 76
             GQE++ YESPRPTMGIHR VFVLF+QLGRQTVYAPGWRQNFSTR+FAELYNLG PVA VY
Sbjct:   103 GQEVMCYESPRPTMGIHRLVFVLFQQLGRQTVYAPGWRQNFSTRNFAELYNLGSPVATVY 162

Query:    77 FNCQRESGSGGR 88
             FNCQRE+GSGGR
Sbjct:   163 FNCQREAGSGGR 174

GO:0009909 "regulation of flower development" evidence=IMP

GO:0010229 "inflorescence development" evidence=IMP

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0048573 "photoperiodism, flowering" evidence=IMP

TAIR|locus:2034168 FT "AT1G65480" [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 58/72 (80%), Positives = 65/72 (90%)

Query:    17 GQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVYAPGWRQNFSTRDFAELYNLGPPVAAVY 76
             G EIV YE+P PT GIHR VF+LFRQLGRQTVYAPGWRQNF+TR+FAE+YNLG PVAAV+
Sbjct:   102 GNEIVCYENPSPTAGIHRVVFILFRQLGRQTVYAPGWRQNFNTREFAEIYNLGLPVAAVF 161

Query:    77 FNCQRESGSGGR 88
             +NCQRESG GGR
Sbjct:   162 YNCQRESGCGGR 173

GO:0009911 "positive regulation of flower development" evidence=IMP

GO:0008429 "phosphatidylethanolamine binding" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0048573 "photoperiodism, flowering" evidence=IEP;RCA

GO:0009909 "regulation of flower development" evidence=IGI;RCA

GO:0010119 "regulation of stomatal movement" evidence=IMP

TAIR|locus:2005521 TSF "AT4G20370" [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 57/72 (79%), Positives = 62/72 (86%)

Query:    17 GQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVYAPGWRQNFSTRDFAELYNLGPPVAAVY 76
             G E+V YESPRP  GIHR V VLFRQLGRQTVYAPGWRQ F+TR+FAE+YNLG PVAA Y
Sbjct:   102 GNEVVCYESPRPPSGIHRIVLVLFRQLGRQTVYAPGWRQQFNTREFAEIYNLGLPVAASY 161

Query:    77 FNCQRESGSGGR 88
             FNCQRE+G GGR
Sbjct:   162 FNCQRENGCGGR 173

GO:0005575 "cellular_component" evidence=ND

GO:0008429 "phosphatidylethanolamine binding" evidence=ISS

GO:0009911 "positive regulation of flower development" evidence=IMP

GO:0009909 "regulation of flower development" evidence=RCA

GO:0048573 "photoperiodism, flowering" evidence=RCA

UNIPROTKB|Q9XGS5 Fdr2 "Cen-like protein FDR2" [Oryza sativa (taxid:4530)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 43/72 (59%), Positives = 57/72 (79%)

Query:    17 GQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVYAPGWRQNFSTRDFAELYNLGPPVAAVY 76
             G+E+++YESP+P +GIHRF+FVLF+Q  RQTV  P +R +F+TR FAE  +LG PVAAVY
Sbjct:   102 GREVISYESPKPNIGIHRFIFVLFKQKRRQTVIVPSFRDHFNTRRFAEENDLGLPVAAVY 161

Query:    77 FNCQRESGSGGR 88
             FN QRE+ +  R
Sbjct:   162 FNAQRETAARRR 173

GO:0008429 "phosphatidylethanolamine binding" evidence=ISS

GO:0010229 "inflorescence development" evidence=IGI

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IGI

UNIPROTKB|Q9XGS4 Fdr1 "Cen-like protein FDR1" [Oryza sativa (taxid:4530)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 44/72 (61%), Positives = 55/72 (76%)

Query:    17 GQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVYAPGWRQNFSTRDFAELYNLGPPVAAVY 76
             G+EI++YESP+P++GIHRFVFVLF+Q  RQ V  P  R +F+TR FAE   LG PVAAVY
Sbjct:   102 GREIISYESPKPSIGIHRFVFVLFKQKRRQAVVVPSSRDHFNTRQFAEENELGLPVAAVY 161

Query:    77 FNCQRESGSGGR 88
             FN QRE+ +  R
Sbjct:   162 FNAQRETAARRR 173

GO:0008429 "phosphatidylethanolamine binding" evidence=ISS

UNIPROTKB|Q6ESF8 P0605D08.14 "Os02g0531600 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 45/72 (62%), Positives = 53/72 (73%)

Query:    17 GQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVYAPGWRQNFSTRDFAELYNLGPPVAAVY 76
             G+E+V+YESPRP +GIHRF+ VLFRQ  RQ V  P  R  FSTR FAE  +LG PVAAVY
Sbjct:   102 GREVVSYESPRPNIGIHRFILVLFRQKRRQAVSPPPSRDRFSTRQFAEDNDLGLPVAAVY 161

Query:    77 FNCQRESGSGGR 88
             FN QRE+ +  R
Sbjct:   162 FNAQRETAARRR 173

GO:0008429 "phosphatidylethanolamine binding" evidence=ISS

GO:0010229 "inflorescence development" evidence=IMP

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

TAIR|locus:2038643 ATC "centroradialis" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 40/73 (54%), Positives = 55/73 (75%)

Query:    17 GQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVYA-PGWRQNFSTRDFAELYNLGPPVAAV 75
             G+EI+ YE PRP +GIHRFV++LF+Q  R +V + P +R  F+TR+FA   +LG PVAAV
Sbjct:   103 GKEIIGYEMPRPNIGIHRFVYLLFKQTRRGSVVSVPSYRDQFNTREFAHENDLGLPVAAV 162

Query:    76 YFNCQRESGSGGR 88
             +FNCQRE+ +  R
Sbjct:   163 FFNCQRETAARRR 175

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0008429 "phosphatidylethanolamine binding" evidence=ISS

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0005634 "nucleus" evidence=IDA

GO:0009910 "negative regulation of flower development" evidence=IMP

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

TAIR|locus:2174058 BFT "brother of FT and TFL1" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 42/75 (56%), Positives = 52/75 (69%)

Query:    17 GQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVYA-PGWRQNFSTRDFAELYNLGPPVAAV 75
             G+EIV YE+P+P  GIHR+VF LF+Q GRQ V A P  R+ F+T  F+  + L  PVAAV
Sbjct:   102 GREIVRYETPKPVAGIHRYVFALFKQRGRQAVKAAPETRECFNTNAFSSYFGLSQPVAAV 161

Query:    76 YFNCQRESGSGGRPS 90
             YFN QRE+    RPS
Sbjct:   162 YFNAQRETAPRRRPS 176

GO:0005737 "cytoplasm" evidence=ISM

GO:0008429 "phosphatidylethanolamine binding" evidence=ISS

GO:0009908 "flower development" evidence=IMP

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SXZ2	FT_ARATH	No assigned EC number	0.8055	0.7272	0.4114	yes	no
Q93WI9	HD3A_ORYSJ	No assigned EC number	0.875	0.7272	0.4022	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	99
PLN00169	175	PLN00169, PLN00169, CETS family protein; Provision	4e-54
cd00866	154	cd00866, PEBP_euk, PhosphatidylEthanolamine-Bindin	1e-16
cd00457	159	cd00457, PEBP, PhosphatidylEthanolamine-Binding Pr	2e-07
pfam01161	147	pfam01161, PBP, Phosphatidylethanolamine-binding p	4e-04

>gnl|CDD|177765 PLN00169, PLN00169, CETS family protein; Provisional

 Score =  165 bits (420), Expect = 4e-54
 Identities = 67/72 (93%), Positives = 69/72 (95%)

Query: 17  GQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVYAPGWRQNFSTRDFAELYNLGPPVAAVY 76
           GQE+V YESPRPT GIHRFVFVLFRQLGRQTVYAPGWRQNF+TRDFAELYNLG PVAAVY
Sbjct: 102 GQEVVCYESPRPTAGIHRFVFVLFRQLGRQTVYAPGWRQNFNTRDFAELYNLGSPVAAVY 161

Query: 77  FNCQRESGSGGR 88
           FNCQRESGSGGR
Sbjct: 162 FNCQRESGSGGR 173

Length = 175

>gnl|CDD|176644 cd00866, PEBP_euk, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in eukaryotes

 Score = 69.3 bits (170), Expect = 1e-16
 Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 9/72 (12%)

Query: 17  GQEIVNYESPRPTM--GIHRFVFVLFRQLGRQTVYAPG-------WRQNFSTRDFAELYN 67
           G+ +V Y  P P    G HR+VF+LF+Q G                R+ F  R+FA+   
Sbjct: 83  GEVLVPYLGPGPPKGTGPHRYVFLLFKQPGGLDFPESKLPPTSGLGRRGFDVREFAKKNG 142

Query: 68  LGPPVAAVYFNC 79
           LG PVAA +F  
Sbjct: 143 LGLPVAANFFQV 154

PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in eukaryotes. Members here include those in plants such as Arabidopsis thaliana FLOWERING LOCUS (FT) and TERMINAL FLOWER1 (FT1) which function as a promoter and a repressor of the floral transitions, respectively as well as the mammalian Raf kinase inhibitory protein (RKIP) which inhibits MAP kinase (Raf-MEK-ERK), G protein-coupled receptor (GPCR) kinase and NFkappaB signaling cascades. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer). Length = 154

>gnl|CDD|176642 cd00457, PEBP, PhosphatidylEthanolamine-Binding Protein (PEBP) domain

 Score = 45.9 bits (109), Expect = 2e-07
 Identities = 17/60 (28%), Positives = 21/60 (35%), Gaps = 4/60 (6%)

Query: 23  YESPRPTM--GIHRFVFVLFRQLGRQTVYAPGW-RQNFSTRDFAELYNLGPPVAAVYFNC 79
           Y  PRP +  G HR+ F ++           G  R  F    FAE   LG  V       
Sbjct: 101 YIGPRPPLGHGPHRYFFQVYALDEPLDRSKLGDGRTKFEVARFAEGNVLG-AVGEWVGQF 159

PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). A number of biological roles for members of the PEBP family include serine protease inhibition, membrane biogenesis, regulation of flowering plant stem architecture, and Raf-1 kinase inhibition. Although their overall structures are similar, the members of the PEBP family bind very different substrates including phospholipids, opioids, and hydrophobic odorant molecules as well as having different oligomerization states (monomer/dimer/tetramer). Length = 159

>gnl|CDD|216338 pfam01161, PBP, Phosphatidylethanolamine-binding protein

 Score = 36.7 bits (85), Expect = 4e-04
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 5/65 (7%)

Query: 17  GQEIVNYESPRP--TMGIHRFVFVLFRQLGRQTVYAPGWRQNFSTRDFAELYNLGPP-VA 73
           GQ +  Y  P P    G HR+VF+L+    +  + A   R     R+  + + LGP  +A
Sbjct: 85  GQTLAGYIGPCPPPGTGPHRYVFLLYALDEKLDLPAGVTRAEL--REAFKGHVLGPATLA 142

Query: 74  AVYFN 78
             +F 
Sbjct: 143 GNFFR 147

Length = 147

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	99
PLN00169	175	CETS family protein; Provisional	99.97
KOG3346	185	consensus Phosphatidylethanolamine binding protein	99.96
cd00866	154	PEBP_euk PhosphatidylEthanolamine-Binding Protein	99.92
PF01161	146	PBP: Phosphatidylethanolamine-binding protein; Int	99.74
cd00457	159	PEBP PhosphatidylEthanolamine-Binding Protein (PEB	99.58
cd00865	150	PEBP_bact_arch PhosphatidylEthanolamine-Binding Pr	98.82
PRK10257	158	putative kinase inhibitor protein; Provisional	98.39
TIGR00481	141	Raf kinase inhibitor-like protein, YbhB/YbcL famil	98.34
COG1881	174	Phospholipid-binding protein [General function pre	98.09
PRK09818	183	putative kinase inhibitor; Provisional	98.04

>PLN00169 CETS family protein; Provisional

Probab=99.97  E-value=3e-31  Score=191.85  Aligned_cols=86  Identities=81%  Similarity=1.295  Sum_probs=79.3

Q ss_pred             ccceeeeEEEE-------cccCceeeeecCCCCCCCCceEEEEEEeeCCccccCCCCCCCCcCHHHHHHHhCCCCcEEEE
Q 035892            3 ANLFHLHILLH-------MHAGQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVYAPGWRQNFSTRDFAELYNLGPPVAAV   75 (99)
Q Consensus         3 ~~~~~lHWlv~-------~~~g~~i~~Y~~P~P~tG~HRYvflLf~Q~~~~~~~~~~~R~~Fn~~~F~~~~~L~~pva~~   75 (99)
                      ++++|+||+++       ...|+++++|+||.|++|+|||+|+||+|++.+.+.++.+|.+||+++|++++||+.|||||
T Consensus        81 ~~~~~~HW~v~nip~~~~~~~g~~~~~Y~~P~Pp~G~HRYvflly~Q~~~~~~~~~~~R~~F~~~~Fa~~~~L~~PvA~n  160 (175)
T PLN00169         81 NLREYLHWLVTDIPATTGATFGQEVVCYESPRPTAGIHRFVFVLFRQLGRQTVYAPGWRQNFNTRDFAELYNLGSPVAAV  160 (175)
T ss_pred             CcccEEEEEEeCCccccccccCccceeecCCCCCCCceeEEEEEEEcCCCcccCCcccCCCcCHHHHHHHhCCCCceEEE
Confidence            57899999999       24688999999999999999999999999998876667899999999999999999999999


Q ss_pred             EEEeeeCCCCCCC
Q 035892           76 YFNCQRESGSGGR   88 (99)
Q Consensus        76 ~f~~~~d~~~~~~   88 (99)
                      ||++||++.++++
T Consensus       161 fF~a~~~~~~~~~  173 (175)
T PLN00169        161 YFNCQRESGSGGR  173 (175)
T ss_pred             EEEEecCCcCCcc
Confidence            9999999988866

>KOG3346 consensus Phosphatidylethanolamine binding protein [General function prediction only]

Probab=99.96  E-value=1.5e-30  Score=189.87  Aligned_cols=86  Identities=42%  Similarity=0.649  Sum_probs=79.0

Q ss_pred             cccceeeeEEEE-------cccCceeeeecCCCCC--CCCceEEEEEEeeCCccccCC--CCCCCCcCHHHHHHHhCCCC
Q 035892            2 FANLFHLHILLH-------MHAGQEIVNYESPRPT--MGIHRFVFVLFRQLGRQTVYA--PGWRQNFSTRDFAELYNLGP   70 (99)
Q Consensus         2 ~~~~~~lHWlv~-------~~~g~~i~~Y~~P~P~--tG~HRYvflLf~Q~~~~~~~~--~~~R~~Fn~~~F~~~~~L~~   70 (99)
                      .+||+||||||+       ++.|++|++|++|.||  +|+||||||||+|+++..+.+  +..|++||+++|+++++|++
T Consensus        81 p~~rE~lHWlV~nIPg~~~~~~G~~i~~Y~~P~Pp~~tG~HRyVfll~rQ~~~~~~~~~~~~~R~~F~~~~F~~~~~lg~  160 (185)
T KOG3346|consen   81 PKFREWLHWLVTNIPGTDGISKGQEISEYLGPGPPKGTGLHRYVFLLYRQPGRLDSDEPSPLSRGNFNTRKFAKKYELGT  160 (185)
T ss_pred             CcceeEEEEEEEeecCCccccCCeEeeeeeCCCCCCCCCceEEEEEEEEcCCccccccCCCCcccceeHHHHHHHhccCC
Confidence            468999999999       5689999999999998  999999999999999977643  69999999999999999999


Q ss_pred             cEEEEEEEeeeCCCCCC
Q 035892           71 PVAAVYFNCQRESGSGG   87 (99)
Q Consensus        71 pva~~~f~~~~d~~~~~   87 (99)
                      ||||+||++|||+.+..
T Consensus       161 PvA~~~f~aq~d~~~~~  177 (185)
T KOG3346|consen  161 PVAGNFFQAQWDDYVPK  177 (185)
T ss_pred             chhhheehhhcchhhHH
Confidence            99999999999988653

>cd00866 PEBP_euk PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in eukaryotes

Probab=99.92  E-value=2.9e-25  Score=154.90  Aligned_cols=77  Identities=38%  Similarity=0.589  Sum_probs=68.3

Q ss_pred             ccceeeeEEEE-----------cccCceeeeecCCCCC--CCCceEEEEEEeeCCccccCC-------CCCCCCcCHHHH
Q 035892            3 ANLFHLHILLH-----------MHAGQEIVNYESPRPT--MGIHRFVFVLFRQLGRQTVYA-------PGWRQNFSTRDF   62 (99)
Q Consensus         3 ~~~~~lHWlv~-----------~~~g~~i~~Y~~P~P~--tG~HRYvflLf~Q~~~~~~~~-------~~~R~~Fn~~~F   62 (99)
                      .+++|||||++           ...|..+++|+||.|+  +|+|||+|+||+|+..+.+.+       ..+|.+||+++|
T Consensus        58 ~~~~~lHwl~~ni~~~~~~~~~~~~~~~~~~Y~~P~Pp~g~g~HRY~fll~~q~~~~~~~~~~~~~~~~~~r~~F~~~~F  137 (154)
T cd00866          58 KFREWLHWLVTNIPGSDTTTGLVSKGEVLVPYLGPGPPKGTGPHRYVFLLFKQPGGLDFPESKLPPTSGLGRRGFDVREF  137 (154)
T ss_pred             CCCCEEEEEEeCcCCccccccccCCCCCcceeeCCCCCCCCCCccEEEEEEEeCCccCccccccccCCccccCCcCHHHH
Confidence            46899999999           2256889999999998  689999999999999877643       479999999999


Q ss_pred             HHHhCCCCcEEEEEEEe
Q 035892           63 AELYNLGPPVAAVYFNC   79 (99)
Q Consensus        63 ~~~~~L~~pva~~~f~~   79 (99)
                      ++++||+.|||+|||++
T Consensus       138 ~~~~~L~~pva~~~f~~  154 (154)
T cd00866         138 AKKNGLGLPVAANFFQV  154 (154)
T ss_pred             HHHhCCCCcEEEEEEeC
Confidence            99999999999999985

PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in eukaryotes. Members here include those in plants such as Arabidopsis thaliana FLOWERING LOCUS (FT) and TERMINAL FLOWER1 (FT1) which function as a promoter and a repressor of the floral transitions, respectively as well as the mammalian Raf kinase inhibitory protein (RKIP) which inhibits MAP kinase (Raf-MEK-ERK), G protein-coupled receptor (GPCR) kinase and NFkappaB signaling cascades. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer).

>PF01161 PBP: Phosphatidylethanolamine-binding protein; InterPro: IPR008914 The PEBP (PhosphatidylEthanolamine-Binding Protein) family is a highly conserved group of proteins that have been identified in numerous tissues in a wide variety of organisms, including bacteria, yeast, nematodes, plants, drosophila and mammals

Probab=99.74  E-value=5.9e-18  Score=116.91  Aligned_cols=74  Identities=32%  Similarity=0.501  Sum_probs=59.6

Q ss_pred             ccceeeeEEEE-cc-----------------cCceeeeecCCCCC--CCCceEEEEEEeeCCccccCCCCCCCCcCHHHH
Q 035892            3 ANLFHLHILLH-MH-----------------AGQEIVNYESPRPT--MGIHRFVFVLFRQLGRQTVYAPGWRQNFSTRDF   62 (99)
Q Consensus         3 ~~~~~lHWlv~-~~-----------------~g~~i~~Y~~P~P~--tG~HRYvflLf~Q~~~~~~~~~~~R~~Fn~~~F   62 (99)
                      .+++|+|||++ +.                 .|+++++|.||.|+  +|.|||+|+||+|+..+.+  ......+++++.
T Consensus        52 ~~~~~~Hwl~~ni~~~~~~~~~~~~~~~~~~~g~~~~~Y~~P~Pp~g~g~HrY~f~ly~q~~~~~l--~~~~~~~~~~~~  129 (146)
T PF01161_consen   52 SFGPFLHWLVTNIPSTELPEGSDGARQGINSSGQVIAPYLGPCPPKGSGPHRYVFLLYAQPSPLPL--SDGATKFDLREA  129 (146)
T ss_dssp             TTTSEEEEEEEEEETSEE-TTSSTCETSBGGTSEEEES--SB-SSTTSSCEEEEEEEEEESSSSTS--GBSSTHHTHHHH
T ss_pred             CCCcEEEEEEcCCCCccCCCCCCccEecccccCccccEEcCCcCcCcCCCceEEEEEEEcCCCCCC--CCCCCHHHHHHH
Confidence            46899999999 44                 15678999999998  7799999999999996654  455566889999


Q ss_pred             HHHhCCCCc-EEEEEEE
Q 035892           63 AELYNLGPP-VAAVYFN   78 (99)
Q Consensus        63 ~~~~~L~~p-va~~~f~   78 (99)
                      .++++|+.+ +||+||+
T Consensus       130 ~~~~~L~~~~l~~~y~r  146 (146)
T PF01161_consen  130 FKGHGLGPASLAGNYFR  146 (146)
T ss_dssp             HHHTTEESEESEEEEEE
T ss_pred             HHcCCCCCceEEEEEEC
Confidence            999999987 8999996

The various functions described for members of this family include lipid binding, neuronal development [], serine protease inhibition [], the control of the morphological switch between shoot growth and flower structures [], and the regulation of several signalling pathways such as the MAP kinase pathway [], and the NF-kappaB pathway []. The control of the latter two pathways involves the PEBP protein RKIP, which interacts with MEK and Raf-1 to inhibit the MAP kinase pathway, and with TAK1, NIK, IKKalpha and IKKbeta to inhibit the NF-kappaB pathway. Other PEBP-like proteins that show strong structural homology to PEBP include Escherichia coli YBHB and YBCL, the Rattus norvegicus (Rat) neuropeptide HCNP, and Antirrhinum majus (Garden snapdragon) protein centroradialis (CEN). Structures have been determined for several members of the PEBP-like family, all of which show extensive fold conservation. The structure consists of a large central beta-sheet flanked by a smaller beta-sheet on one side, and an alpha helix on the other. Sequence alignments show two conserved central regions, CR1 and CR2, that form a consensus signature for the PEBP family. These two regions form part of the ligand-binding site, which can accommodate various anionic groups. The N- and C-terminal regions are the least conserved, and may be involved in interactions with different protein partners. The N-terminal residues 2-12 form the natural cleavage peptide HCNP involved in neuronal development. The C-terminal region is deleted in plant and bacterial PEBP homologues, and may help control accessibility to the active site. ; PDB: 1BD9_A 1BEH_A 2QYQ_A 2L7W_A 3AXY_A 2IQX_C 2IQY_A 1KN3_A 1FUX_A 1B7A_A ....

>cd00457 PEBP PhosphatidylEthanolamine-Binding Protein (PEBP) domain

Probab=99.58  E-value=4.2e-15  Score=105.44  Aligned_cols=56  Identities=29%  Similarity=0.349  Sum_probs=49.6

Q ss_pred             eecCCCCC--CCCceEEEEEEeeCCccccCC-CCCCCCcCHHHHHHHhCCCCcEEEEEEE
Q 035892           22 NYESPRPT--MGIHRFVFVLFRQLGRQTVYA-PGWRQNFSTRDFAELYNLGPPVAAVYFN   78 (99)
Q Consensus        22 ~Y~~P~P~--tG~HRYvflLf~Q~~~~~~~~-~~~R~~Fn~~~F~~~~~L~~pva~~~f~   78 (99)
                      .|.||.||  +|.|||+|+||+|+..+.... ...|..+++.+|++++.|+ ++|+++++
T Consensus       100 ~Y~GP~PP~G~g~HrY~f~lyald~~~~~~~~~~~~~~~~~~~~~~~~vL~-~~a~~~~~  158 (159)
T cd00457         100 VYIGPRPPLGHGPHRYFFQVYALDEPLDRSKLGDGRTKFEVARFAEGNVLG-AVGEWVGQ  158 (159)
T ss_pred             CCcCCCCCCCCCCeeEEEEEEEecCccccccccCCCCHHHHHHHHHhCeee-EEEEEEEE
Confidence            89999998  479999999999998876543 4789999999999999997 78999876

PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). A number of biological roles for members of the PEBP family include serine protease inhibition, membrane biogenesis, regulation of flowering plant stem architecture, and Raf-1 kinase inhibition. Although their overall structures are similar, the members of the PEBP family bind very different substrates including phospholipids, opioids, and hydrophobic odorant molecules as well as having different oligomerization states (monomer/dimer/tetramer).

>cd00865 PEBP_bact_arch PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea

Probab=98.82  E-value=1.5e-08  Score=71.02  Aligned_cols=59  Identities=17%  Similarity=0.250  Sum_probs=45.3

Q ss_pred             cceeeeEEEE--------cccCc----------------eeeeecCCCCC-CCCceEEEEEEeeCCccccCCCCCCCCcC
Q 035892            4 NLFHLHILLH--------MHAGQ----------------EIVNYESPRPT-MGIHRFVFVLFRQLGRQTVYAPGWRQNFS   58 (99)
Q Consensus         4 ~~~~lHWlv~--------~~~g~----------------~i~~Y~~P~P~-tG~HRYvflLf~Q~~~~~~~~~~~R~~Fn   58 (99)
                      ..+|+||++.        +..|.                ....|.||.|| .+.|||+|.||+++..+.+     ..+++
T Consensus        54 ~~~~~HW~~~nIp~~~~~i~~g~~~~~~~~~~~~g~n~~~~~~Y~gP~Pp~~~~HrY~f~vyAld~~l~~-----~~~~~  128 (150)
T cd00865          54 GGGFVHWVVWNIPADTTELPEGASRGALPAGAVQGRNDFGEAGYGGPCPPDGGPHRYVFTVYALDVPLLL-----PPGAT  128 (150)
T ss_pred             CCCEEEEEEeccCcccccccCCcccccCCCCCeEeecCCCCCeecCCCCcCCCceEEEEEEEEeCCccCC-----CCCCC
Confidence            4689999999        11221                35799999999 5999999999999988765     35677


Q ss_pred             HHHHHHHhC
Q 035892           59 TRDFAELYN   67 (99)
Q Consensus        59 ~~~F~~~~~   67 (99)
                      ..++.+...
T Consensus       129 ~~~l~~ai~  137 (150)
T cd00865         129 RAELLFAMK  137 (150)
T ss_pred             HHHHHHHHh
Confidence            777777644

PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in bacterial and archaea. Members here include Escherichia coli YBHB and YBCL which are thought to regulate protein phosphorylation as well as Sulfolobus solfataricus SsCEI which inhibits serine proteases alpha-chymotrypsin and elastase. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer). In a few of the bacterial members present here the dimerization interface is proposed to form the ligand binding site, unlike in other PEBP members.

>PRK10257 putative kinase inhibitor protein; Provisional

Probab=98.39  E-value=5.7e-07  Score=64.34  Aligned_cols=30  Identities=27%  Similarity=0.489  Sum_probs=25.1

Q ss_pred             eeecCCCCCCC-CceEEEEEEeeC-CccccCC
Q 035892           21 VNYESPRPTMG-IHRFVFVLFRQL-GRQTVYA   50 (99)
Q Consensus        21 ~~Y~~P~P~tG-~HRYvflLf~Q~-~~~~~~~   50 (99)
                      ..|.||.||.| .|||+|.||+++ ..+.+++
T Consensus       101 ~gY~GP~PP~g~~HrY~f~vyALd~~~L~l~~  132 (158)
T PRK10257        101 AGYGGAAPPKGETHRYIFTVHALDVERIDVDE  132 (158)
T ss_pred             ccCcCCCCccCCCceEEEEEEEecCcccCCCC
Confidence            46999999976 799999999999 4677653

>TIGR00481 Raf kinase inhibitor-like protein, YbhB/YbcL family

Probab=98.34  E-value=1.8e-06  Score=60.48  Aligned_cols=42  Identities=24%  Similarity=0.464  Sum_probs=33.3

Q ss_pred             eeecCCCCCCCCceEEEEEEeeCCc-cccCCCCCCCCcCHHHHHHHhC
Q 035892           21 VNYESPRPTMGIHRFVFVLFRQLGR-QTVYAPGWRQNFSTRDFAELYN   67 (99)
Q Consensus        21 ~~Y~~P~P~tG~HRYvflLf~Q~~~-~~~~~~~~R~~Fn~~~F~~~~~   67 (99)
                      ..|.||.||.|.|||+|.||+.+.. +.++     .++...++.+...
T Consensus        86 ~~Y~GP~PP~g~HrY~f~vyALd~~~l~l~-----~~~~~~~l~~ai~  128 (141)
T TIGR00481        86 SGYIGPCPPKGDHRYLFTVYALDTEKLDLD-----PGFSLADLGDAME  128 (141)
T ss_pred             ccEeCCCCcCCCEEEEEEEEEecCCCCCCC-----CCCCHHHHHHHHh
Confidence            5899999998889999999999876 7654     2567777776643

>COG1881 Phospholipid-binding protein [General function prediction only]

Probab=98.09  E-value=1.1e-05  Score=58.56  Aligned_cols=47  Identities=21%  Similarity=0.272  Sum_probs=30.3

Q ss_pred             eecCCCCCCCC-ceEEEEEEeeCCccccCCCCCCCCcCHHHHHHHhCCC
Q 035892           22 NYESPRPTMGI-HRFVFVLFRQLGRQTVYAPGWRQNFSTRDFAELYNLG   69 (99)
Q Consensus        22 ~Y~~P~P~tG~-HRYvflLf~Q~~~~~~~~~~~R~~Fn~~~F~~~~~L~   69 (99)
                      -|.||.||.|- |||.|.||+++-..... +.+...=.+.+-++.|.|+
T Consensus       116 ~Y~Gp~PP~g~~HrY~f~vyALd~~~~~~-~~g~~~~~~~~~~~~hil~  163 (174)
T COG1881         116 GYGGPCPPKGHGHRYYFTVYALDVELLLL-PAGASGAELGKAMEGHILA  163 (174)
T ss_pred             CcccCCCCCCCCeEEEEEEEEcccccccC-CCCCCHHHHHHHHHHHHHH
Confidence            39999999666 99999999999764322 2222222344445555554

>PRK09818 putative kinase inhibitor; Provisional

Probab=98.04  E-value=9.4e-06  Score=59.37  Aligned_cols=30  Identities=13%  Similarity=0.264  Sum_probs=24.1

Q ss_pred             eeecCCCCC--CCCceEEEEEEeeC-CccccCC
Q 035892           21 VNYESPRPT--MGIHRFVFVLFRQL-GRQTVYA   50 (99)
Q Consensus        21 ~~Y~~P~P~--tG~HRYvflLf~Q~-~~~~~~~   50 (99)
                      ..|.||.||  .|.|||+|.||+.+ ..+.+++
T Consensus       123 ~gY~GP~PP~G~g~HrY~F~vyALd~~~l~l~~  155 (183)
T PRK09818        123 AGFGGACPPKGDKPHHYQFKVWALKTDKIPVDS  155 (183)
T ss_pred             CceECCCCccCCCCEEEEEEEEEecCcccCCCC
Confidence            479999998  45899999999988 4466543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	99
3axy_A	170	Structure Of Florigen Activation Complex Consisting		8e-31
1wkp_A	171	Flowering Locus T (Ft) From Arabidopsis Thaliana Le		9e-28
1wko_A	180	Terminal Flower 1 (Tfl1) From Arabidopsis Thaliana		2e-17
1qou_A	181	Cen (Centroradialis) Protein From Antirrhinum Lengt		3e-16
2jyz_A	179	Cg7054 Solution Structure Length = 179		2e-05

>pdb|3AXY|A Chain A, Structure Of Florigen Activation Complex Consisting Of Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd Homolog Osfd1 Length = 170

Iteration: 1
 Score =  128 bits (321), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 57/67 (85%), Positives = 64/67 (95%)
Query: 17  GQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVYAPGWRQNFSTRDFAELYNLGPPVAAVY 76
           GQE+++YESPRPTMGIHR VFVLF+QLGRQTVYAPGWRQNF+T+DFAELYNLG PVAAVY
Sbjct: 104 GQEVMSYESPRPTMGIHRLVFVLFQQLGRQTVYAPGWRQNFNTKDFAELYNLGSPVAAVY 163
Query: 77  FNCQRES 83
           FN QRE+
Sbjct: 164 FNSQREA 170

>pdb|1WKP|A Chain A, Flowering Locus T (Ft) From Arabidopsis Thaliana Length = 171

Iteration: 1
 Score =  118 bits (295), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 53/67 (79%), Positives = 61/67 (91%)
Query: 17  GQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVYAPGWRQNFSTRDFAELYNLGPPVAAVY 76
           G EIV+YE+P PT GIHR VF+LFRQLGRQTVYAPGWRQNF+TR+FAE+YNLG PVAAV+
Sbjct: 105 GNEIVSYENPSPTAGIHRVVFILFRQLGRQTVYAPGWRQNFNTREFAEIYNLGLPVAAVF 164
Query: 77  FNCQRES 83
           +N QRES
Sbjct: 165 YNSQRES 171

>pdb|1WKO|A Chain A, Terminal Flower 1 (Tfl1) From Arabidopsis Thaliana Length = 180

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/74 (56%), Positives = 56/74 (75%), Gaps = 3/74 (4%)
Query: 17  GQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVYA--PGWRQNFSTRDFAELYNLGPPVAA 74
           G+E+V+YE PRP++GIHRFVFVLFRQ  R+ ++   P  R +F+TR FA  Y+LG PVAA
Sbjct: 108 GKEVVSYELPRPSIGIHRFVFVLFRQKQRRVIFPNIPS-RDHFNTRKFAVEYDLGLPVAA 166
Query: 75  VYFNCQRESGSGGR 88
           V+FN QRE+ +  R
Sbjct: 167 VFFNAQRETAARKR 180

>pdb|1QOU|A Chain A, Cen (Centroradialis) Protein From Antirrhinum Length = 181

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 40/75 (53%), Positives = 53/75 (70%), Gaps = 3/75 (4%)
Query: 17  GQEIVNYESPRPTMGIHRFVFVLFRQLGR-QTVYAPG--WRQNFSTRDFAELYNLGPPVA 73
           G+E+V+YE PRP +GIHRFVF+LF+Q  R Q + +P    R  F+TR F +   LG PVA
Sbjct: 107 GKEVVSYEMPRPNIGIHRFVFLLFKQKKRGQAMLSPPVVCRDGFNTRKFTQENELGLPVA 166
Query: 74  AVYFNCQRESGSGGR 88
           AV+FNCQRE+ +  R
Sbjct: 167 AVFFNCQRETAARRR 181

>pdb|2JYZ|A Chain A, Cg7054 Solution Structure Length = 179

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Query: 16  AGQEIVNY--ESPRPTMGIHRFVFVLFRQLGR-------QTVYAPGWRQNFSTRDFAELY 66
            G  + +Y    P    G+HR++F+L+RQ  +             G R NF+ RDFA  +
Sbjct: 93  GGHSLADYVGSGPPKDTGLHRYIFLLYRQENKIEETPTISNTTRTG-RLNFNARDFAAKH 151
Query: 67  NLGPPVAAVYFNCQRES 83
            LG P+AA Y+  Q + 
Sbjct: 152 GLGEPIAANYYQAQYDD 168

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	99
3axy_A	170	Protein heading DATE 3A; phosphatidylethanolamine-	2e-32
1wko_A	180	Terminal flower 1 protein; CIS-peptide, PEBP, sign	1e-30
2jyz_A	179	CG7054-PA, GH14779P, PEBP; PEBP/RKIP, molecular mo	3e-26
2iqy_A	190	Phosphatidylethanolamine-binding protein 1; alpha-	4e-26
1wpx_B	220	Carboxypeptidase Y inhibitor; carboxypeptidase inh	1e-22
2gzq_A	200	Phosphatidylethanolamine-binding protein; structur	1e-17

>3axy_A Protein heading DATE 3A; phosphatidylethanolamine-binding protein, 14-3-3 protein, BZ protein, floral induction; HET: SEP; 2.40A {Oryza sativa japonica group} PDB: 1wkp_A Length = 170

 Score =  110 bits (276), Expect = 2e-32
 Identities = 57/67 (85%), Positives = 64/67 (95%)

Query: 17  GQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVYAPGWRQNFSTRDFAELYNLGPPVAAVY 76
           GQE+++YESPRPTMGIHR VFVLF+QLGRQTVYAPGWRQNF+T+DFAELYNLG PVAAVY
Sbjct: 104 GQEVMSYESPRPTMGIHRLVFVLFQQLGRQTVYAPGWRQNFNTKDFAELYNLGSPVAAVY 163

Query: 77  FNCQRES 83
           FN QRE+
Sbjct: 164 FNSQREA 170

>1wko_A Terminal flower 1 protein; CIS-peptide, PEBP, signaling protein; 1.80A {Arabidopsis thaliana} PDB: 1qou_A Length = 180

 Score =  105 bits (264), Expect = 1e-30
 Identities = 41/84 (48%), Positives = 57/84 (67%), Gaps = 1/84 (1%)

Query: 6   FHLHILLHMHAGQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVYAPGW-RQNFSTRDFAE 64
            ++        G+E+V+YE PRP++GIHRFVFVLFRQ  R+ ++     R +F+TR FA 
Sbjct: 97  TNIPGTTDATFGKEVVSYELPRPSIGIHRFVFVLFRQKQRRVIFPNIPSRDHFNTRKFAV 156

Query: 65  LYNLGPPVAAVYFNCQRESGSGGR 88
            Y+LG PVAAV+FN QRE+ +  R
Sbjct: 157 EYDLGLPVAAVFFNAQRETAARKR 180

>2jyz_A CG7054-PA, GH14779P, PEBP; PEBP/RKIP, molecular modeling, chemical shift variations, titration, unknown function; NMR {Drosophila melanogaster} Length = 179

 Score = 94.2 bits (234), Expect = 3e-26
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 8/84 (9%)

Query: 13  HMHAGQEIVNYESPR--PTMGIHRFVFVLFRQLGRQTVYAP------GWRQNFSTRDFAE 64
           +   G  + +Y         G+HR++F+L+RQ  +              R NF+ RDFA 
Sbjct: 90  NPSGGHSLADYVGSGPPKDTGLHRYIFLLYRQENKIEETPTISNTTRTGRLNFNARDFAA 149

Query: 65  LYNLGPPVAAVYFNCQRESGSGGR 88
            + LG P+AA Y+  Q +     R
Sbjct: 150 KHGLGEPIAANYYQAQYDDYVPIR 173

>2iqy_A Phosphatidylethanolamine-binding protein 1; alpha-beta, hydrolase inhibitor; 1.40A {Rattus norvegicus} PDB: 2iqx_A 1b7a_A* 1a44_A 1beh_A 1bd9_A 2l7w_A 2qyq_A* 1kn3_A Length = 190

 Score = 94.3 bits (234), Expect = 4e-26
 Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 15/92 (16%)

Query: 7   HLHILL------HMHAGQEIVNY--ESPRPTMGIHRFVFVLFRQLGRQTVYAP------- 51
             H L+       + +G  +  Y    P    G+HR+V++++ Q        P       
Sbjct: 87  WHHFLVVNMKGNDISSGTVLSEYVGSGPPKDTGLHRYVWLVYEQEQPLNCDEPILSNKSG 146

Query: 52  GWRQNFSTRDFAELYNLGPPVAAVYFNCQRES 83
             R  F    F + Y+LG PVA   F  + + 
Sbjct: 147 DNRGKFKVESFRKKYHLGAPVAGTCFQAEWDD 178

>1wpx_B Carboxypeptidase Y inhibitor; carboxypeptidase inhibitor, serine proteinase inhibitor, Pro inhibitor complex; HET: NAG NDG; 2.70A {Saccharomyces cerevisiae} SCOP: b.17.1.1 Length = 220

 Score = 86.3 bits (213), Expect = 1e-22
 Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 13/83 (15%)

Query: 12  LHMHAGQEIVNYESPRPTMGI--HRFVFVLFRQLGRQTVYA-------PGW---RQNFST 59
            +      ++ Y  P P  G   HR+VF+L++Q               P W         
Sbjct: 139 FNTKGSNTLIEYMGPAPPKGSGPHRYVFLLYKQPKGVDSSKFSKIKDRPNWGYGTPATGV 198

Query: 60  RDFAELYNLGPPVAAVYFNCQRE 82
             +A+  NL   VA+ +F  + +
Sbjct: 199 GKWAKENNLQ-LVASNFFYAETK 220

>2gzq_A Phosphatidylethanolamine-binding protein; structural genomics, PSI, protein structure initiative; HET: MSE; 1.30A {Plasmodium vivax} PDB: 2r77_A Length = 200

 Score = 73.1 bits (179), Expect = 1e-17
 Identities = 13/81 (16%), Positives = 21/81 (25%), Gaps = 15/81 (18%)

Query: 17  GQEIVNYESPRP--TMGIHRFVFVLFRQLGRQTVYAPGW----------RQNFSTRDFAE 64
              ++ Y  P      G+HR  F+L            G           R  F+    A 
Sbjct: 120 CITLLPYVGPSIKKGTGLHRISFILSLVKEENKGNVTGVPLYRGEHYITRVKFNNCQSAY 179

Query: 65  LYNLG---PPVAAVYFNCQRE 82
                     V   +   +R+
Sbjct: 180 NVIQMNDMKIVGFNWCQMRRK 200

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	99
1wko_A	180	Terminal flower 1 protein; CIS-peptide, PEBP, sign	99.97
3axy_A	170	Protein heading DATE 3A; phosphatidylethanolamine-	99.96
2iqy_A	190	Phosphatidylethanolamine-binding protein 1; alpha-	99.96
2jyz_A	179	CG7054-PA, GH14779P, PEBP; PEBP/RKIP, molecular mo	99.95
1wpx_B	220	Carboxypeptidase Y inhibitor; carboxypeptidase inh	99.91
2gzq_A	200	Phosphatidylethanolamine-binding protein; structur	99.89
1fjj_A	159	Hypothetical 17.1 kDa protein in MODC-BIOA interge	99.18
2evv_A	207	Hypothetical protein HP0218; alpha-beta structure,	99.18
1fux_A	166	Hypothetical 19.5 kDa protein in EMRE-RUS intergen	99.17
3n08_A	153	Putative phosphatidylethanolamine-binding protein;	99.15

>1wko_A Terminal flower 1 protein; CIS-peptide, PEBP, signaling protein; 1.80A {Arabidopsis thaliana} PDB: 1qou_A

Probab=99.97  E-value=2.9e-30  Score=185.51  Aligned_cols=85  Identities=51%  Similarity=0.838  Sum_probs=74.6

Q ss_pred             ccceeeeEEEE-------cccCceeeeecCCCCCCCCceEEEEEEeeCCccccCC-CCCCCCcCHHHHHHHhCCCCcEEE
Q 035892            3 ANLFHLHILLH-------MHAGQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVYA-PGWRQNFSTRDFAELYNLGPPVAA   74 (99)
Q Consensus         3 ~~~~~lHWlv~-------~~~g~~i~~Y~~P~P~tG~HRYvflLf~Q~~~~~~~~-~~~R~~Fn~~~F~~~~~L~~pva~   74 (99)
                      ++++|+||||+       ...|..+++|.||.||+|.|||+|+||+|+..+.+.+ +.+|.+||+++|+++++|+.||||
T Consensus        87 ~~~~~~HWlv~nIp~~~~~~~G~~~~~Y~gP~Pp~G~HRYvf~ly~q~~~l~~~~~~~~R~~F~~~~F~~~~~Lg~PVa~  166 (180)
T 1wko_A           87 FLKEHLHWIVTNIPGTTDATFGKEVVSYELPRPSIGIHRFVFVLFRQKQRRVIFPNIPSRDHFNTRKFAVEYDLGLPVAA  166 (180)
T ss_dssp             TTCCEEEEEEEEEETTSBGGGSEEEECCCCCCCCSSCEEEEEEEEECCTTCCCCCCCCCSTTCCHHHHHHHTTCCSEEEE
T ss_pred             CCccEEEEEEeccCcCccccCCceeeeeCCCCCCCCceEEEEEEEecCCccCCCCCccccCCcCHHHHHHHhCCCCcEEE
Confidence            47899999999       2358899999999999999999999999999888765 789999999999999999999999


Q ss_pred             EEEEeeeCCCCCC
Q 035892           75 VYFNCQRESGSGG   87 (99)
Q Consensus        75 ~~f~~~~d~~~~~   87 (99)
                      |||++|||+..++
T Consensus       167 ~fF~~q~d~~~r~  179 (180)
T 1wko_A          167 VFFNAQRETAARK  179 (180)
T ss_dssp             EEEEECCC-----
T ss_pred             EEEEEEECCcccC
Confidence            9999999996654

>3axy_A Protein heading DATE 3A; phosphatidylethanolamine-binding protein, 14-3-3 protein, BZ protein, floral induction; HET: SEP; 2.40A {Oryza sativa japonica group} PDB: 1wkp_A

Probab=99.96  E-value=6.1e-30  Score=182.43  Aligned_cols=81  Identities=74%  Similarity=1.196  Sum_probs=75.8

Q ss_pred             ccceeeeEEEE-------cccCceeeeecCCCCCCCCceEEEEEEeeCCccccCCCCCCCCcCHHHHHHHhCCCCcEEEE
Q 035892            3 ANLFHLHILLH-------MHAGQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVYAPGWRQNFSTRDFAELYNLGPPVAAV   75 (99)
Q Consensus         3 ~~~~~lHWlv~-------~~~g~~i~~Y~~P~P~tG~HRYvflLf~Q~~~~~~~~~~~R~~Fn~~~F~~~~~L~~pva~~   75 (99)
                      ++++|+||||+       .+.|+++++|.||.||+|.|||+|+||+|+..+++.++.+|.+||+++|+++++|+.|||||
T Consensus        83 ~~~~~~HWlv~nIp~~~~~~~G~~~~~Y~gP~Pp~G~HRY~f~ly~q~~~l~~~~p~~R~~F~~~~F~~~~~Lg~Pva~~  162 (170)
T 3axy_A           83 NLREYLHWLVTDIPGTTAASFGQEVMSYESPRPTMGIHRLVFVLFQQLGRQTVYAPGWRQNFNTKDFAELYNLGSPVAAV  162 (170)
T ss_dssp             TTCSEEEEEEEEEETTSBGGGSEEEECCCCCCCCSSCEEEEEEEEECSSCCCCCCCSCSTTCCHHHHHHHTTCCSCSEEE
T ss_pred             CCccEEEEEEeCCCCCccccCCceeceecCCCCCCCcEEEEEEEEecCCccCCCCccccCCcCHHHHHHHhCCCCcEEEE
Confidence            47899999999       35688899999999999999999999999999888888999999999999999999999999


Q ss_pred             EEEeeeCC
Q 035892           76 YFNCQRES   83 (99)
Q Consensus        76 ~f~~~~d~   83 (99)
                      ||++|||+
T Consensus       163 fF~~q~d~  170 (170)
T 3axy_A          163 YFNSQREA  170 (170)
T ss_dssp             EEEECCCC
T ss_pred             EEEEEecC
Confidence            99999984

>2iqy_A Phosphatidylethanolamine-binding protein 1; alpha-beta, hydrolase inhibitor; 1.40A {Rattus norvegicus} PDB: 2iqx_A 1b7a_A* 1a44_A 1beh_A 1bd9_A 2l7w_A 2qyq_A* 1kn3_A

Probab=99.96  E-value=1.1e-28  Score=178.58  Aligned_cols=84  Identities=24%  Similarity=0.449  Sum_probs=76.2

Q ss_pred             ccceeeeEEEE------cccCceeeeecCCCCC--CCCceEEEEEEeeCCccccCC-------CCCCCCcCHHHHHHHhC
Q 035892            3 ANLFHLHILLH------MHAGQEIVNYESPRPT--MGIHRFVFVLFRQLGRQTVYA-------PGWRQNFSTRDFAELYN   67 (99)
Q Consensus         3 ~~~~~lHWlv~------~~~g~~i~~Y~~P~P~--tG~HRYvflLf~Q~~~~~~~~-------~~~R~~Fn~~~F~~~~~   67 (99)
                      ++++|+||||+      +..|+++++|.||.||  +|.|||+|+||+|+..+++.+       +.+|.+||+++|+++++
T Consensus        83 ~~~~~~HWlv~nIp~~~~~~G~~~~~Y~gP~Pp~g~g~HRY~f~ly~q~~~l~~~~~~l~~~~~~~R~~F~~~~F~~~~~  162 (190)
T 2iqy_A           83 KFREWHHFLVVNMKGNDISSGTVLSEYVGSGPPKDTGLHRYVWLVYEQEQPLNCDEPILSNKSGDNRGKFKVESFRKKYH  162 (190)
T ss_dssp             TTCCEEEEEEEEEETTBGGGSEEEECCCCCCCCTTSCCEEEEEEEEECSSCCCCCSCCBCTTCCTTCSSCCHHHHHHHTT
T ss_pred             CcCCEEEEEEeCCChhccccCccccceeCCCCcCCCCceEEEEEEEEeCCccCcchhhccCCCcccCCCcCHHHHHHHhC
Confidence            47899999999      5678999999999998  889999999999999877653       57999999999999999


Q ss_pred             CCCcEEEEEEEeeeCCCCC
Q 035892           68 LGPPVAAVYFNCQRESGSG   86 (99)
Q Consensus        68 L~~pva~~~f~~~~d~~~~   86 (99)
                      |+.|||||||++|||+.+.
T Consensus       163 Lg~pVA~~fF~~q~d~~v~  181 (190)
T 2iqy_A          163 LGAPVAGTCFQAEWDDSVP  181 (190)
T ss_dssp             CCSCSEEEEEEECCCTTHH
T ss_pred             CCCeeEEEEEEEEccCchH
Confidence            9999999999999998754

>2jyz_A CG7054-PA, GH14779P, PEBP; PEBP/RKIP, molecular modeling, chemical shift variations, titration, unknown function; NMR {Drosophila melanogaster}

Probab=99.95  E-value=5.9e-28  Score=173.12  Aligned_cols=83  Identities=31%  Similarity=0.518  Sum_probs=74.1

Q ss_pred             ccceeeeEEEE--------cccCceeeeecCCCCC--CCCceEEEEEEeeCCccccC-------CCCCCCCcCHHHHHHH
Q 035892            3 ANLFHLHILLH--------MHAGQEIVNYESPRPT--MGIHRFVFVLFRQLGRQTVY-------APGWRQNFSTRDFAEL   65 (99)
Q Consensus         3 ~~~~~lHWlv~--------~~~g~~i~~Y~~P~P~--tG~HRYvflLf~Q~~~~~~~-------~~~~R~~Fn~~~F~~~   65 (99)
                      ++++|+||||+        +..|+.+++|.||.||  +|.|||+|+||+|+..++ .       .+.+|.+||+++|+++
T Consensus        72 ~~~~~~HWlv~nIp~~~~~l~~g~~~~~Y~gP~Pp~g~g~HRY~f~ly~q~~~l~-~~~~l~~~~~~~R~~F~~~~F~~~  150 (179)
T 2jyz_A           72 KYREILHWSVVNIPGSNENPSGGHSLADYVGSGPPKDTGLHRYIFLLYRQENKIE-ETPTISNTTRTGRLNFNARDFAAK  150 (179)
T ss_dssp             SSCCCSCCEEECCCTTSSSTTSSEEEECCCSCCSCGGGCSEEEEEEEEEECSCCC-CSSCBCTTCCSSSCCCCTHHHHHH
T ss_pred             CCccEEEEEEECCCCCccccCcccccccccCCCCCCCCCceEEEEEEEEcCCcCC-chhhccCCCcccCCCcCHHHHHHH
Confidence            46899999999        4568899999999998  789999999999998776 2       2589999999999999


Q ss_pred             hCCCCcEEEEEEEeeeCCCCC
Q 035892           66 YNLGPPVAAVYFNCQRESGSG   86 (99)
Q Consensus        66 ~~L~~pva~~~f~~~~d~~~~   86 (99)
                      ++|+.|||||||++|||+.+.
T Consensus       151 ~~Lg~pvA~~~F~~q~d~~v~  171 (179)
T 2jyz_A          151 HGLGEPIAANYYQAQYDDYVP  171 (179)
T ss_dssp             TTCCSCSEEEEEEECCCTHHH
T ss_pred             hCCCCccEEEEEEEEecCchH
Confidence            999999999999999998653

>1wpx_B Carboxypeptidase Y inhibitor; carboxypeptidase inhibitor, serine proteinase inhibitor, Pro inhibitor complex; HET: NAG NDG; 2.70A {Saccharomyces cerevisiae} SCOP: b.17.1.1

Probab=99.91  E-value=3.6e-24  Score=157.20  Aligned_cols=79  Identities=25%  Similarity=0.413  Sum_probs=68.6

Q ss_pred             ccceeeeEEEE---c--------------------ccC-ceeeeecCCCCC--CCCceEEEEEEeeCCcccc---CCCCC
Q 035892            3 ANLFHLHILLH---M--------------------HAG-QEIVNYESPRPT--MGIHRFVFVLFRQLGRQTV---YAPGW   53 (99)
Q Consensus         3 ~~~~~lHWlv~---~--------------------~~g-~~i~~Y~~P~P~--tG~HRYvflLf~Q~~~~~~---~~~~~   53 (99)
                      ++++|+||||+   .                    .+| ..++.|.||.||  +|+|||+|+||+|+..+++   ..+.+
T Consensus       106 ~~~~~~HW~v~nIp~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~Y~gP~Pp~g~g~HRY~f~lya~~~~l~~~~~~~~~~  185 (220)
T 1wpx_B          106 KWSEFCHLVECDLKLLNEATHETSGATEFFASEFNTKGSNTLIEYMGPAPPKGSGPHRYVFLLYKQPKGVDSSKFSKIKD  185 (220)
T ss_dssp             TTCSEEEEEEEEEEECC---------CCEEEEEEECTTCEEEECCCCCCCCTTSCCEEEEEEEEECCTTCCGGGSCCCCC
T ss_pred             CcCcEEEEEEEccCCCccccccccCCCCccceEeecCCccccccccCCCCccCCCCceEEEEEEecCCcCCccccCCccc
Confidence            46899999999   1                    124 688999999998  7799999999999998764   34688


Q ss_pred             CCCcC-------HHHHHHHhCCCCcEEEEEEEeeeC
Q 035892           54 RQNFS-------TRDFAELYNLGPPVAAVYFNCQRE   82 (99)
Q Consensus        54 R~~Fn-------~~~F~~~~~L~~pva~~~f~~~~d   82 (99)
                      |.+||       +++|++++|| .|||||||++||+
T Consensus       186 R~~f~~~~~~f~~~~F~~~~~L-~pVAanfF~~q~~  220 (220)
T 1wpx_B          186 RPNWGYGTPATGVGKWAKENNL-QLVASNFFYAETK  220 (220)
T ss_dssp             SBGGGCCSSSCSHHHHHHTTTC-EEEEEEEEEECCC
T ss_pred             ccCCCccccchhHHHHHHHhCC-eEEEEEEEEEecC
Confidence            99999       9999999999 6899999999996

>2gzq_A Phosphatidylethanolamine-binding protein; structural genomics, PSI, protein structure initiative; HET: MSE; 1.30A {Plasmodium vivax} PDB: 2r77_A

Probab=99.89  E-value=2.4e-23  Score=151.62  Aligned_cols=79  Identities=19%  Similarity=0.349  Sum_probs=66.7

Q ss_pred             ccceeeeEEEE------cccCc-----eeeeecCCCCC--CCCceEEEEEE--eeCCccccCC-C-------CCCCCcCH
Q 035892            3 ANLFHLHILLH------MHAGQ-----EIVNYESPRPT--MGIHRFVFVLF--RQLGRQTVYA-P-------GWRQNFST   59 (99)
Q Consensus         3 ~~~~~lHWlv~------~~~g~-----~i~~Y~~P~P~--tG~HRYvflLf--~Q~~~~~~~~-~-------~~R~~Fn~   59 (99)
                      ++++|+||||+      +..|.     .+++|.||.||  +|+|||+|+||  +|++.+++.+ +       .+|.+||+
T Consensus        95 ~~~~~~HWlv~nIp~~~~~~g~~~~~~~~~~Y~gP~Pp~g~g~HRYvF~l~~fkQ~~~~~~~~~p~~~~~~~~~R~~F~~  174 (200)
T 2gzq_A           95 DGRDYVHWAVSGIKSKELVKGTDKNCITLLPYVGPSIKKGTGLHRISFILSLVKEENKGNVTGVPLYRGEHYITRVKFNN  174 (200)
T ss_dssp             TTCSEEEEEEEEECSSEEETTCCTTCEEEECCCCCCCCTTSCCEEEEEEEEEEEGGGTTCBTTBCCCCCGGGCCTTHHHH
T ss_pred             CCCCEEEEEEeCCCcCcccCCccCCCcceeeeeCCCCcCCCCcceEEEEEEEecccCcccccccCccccccccccCcccc
Confidence            46899999999      33454     79999999996  88999999985  9998876543 2       48999999


Q ss_pred             H----HHHHHhCCCCcEEEEEEEeeeC
Q 035892           60 R----DFAELYNLGPPVAAVYFNCQRE   82 (99)
Q Consensus        60 ~----~F~~~~~L~~pva~~~f~~~~d   82 (99)
                      +    +|++++|| .|||+|||++|+.
T Consensus       175 ~~gv~~F~~~~gL-~pVganfF~~~n~  200 (200)
T 2gzq_A          175 CQSAYNVIQMNDM-KIVGFNWCQMRRK  200 (200)
T ss_dssp             TCCHHHHHHHTTC-EEEEEEEEEEECC
T ss_pred             chhhHHHHHHcCC-EEEEEEEEEEecC
Confidence            8    89999999 5999999999863

>1fjj_A Hypothetical 17.1 kDa protein in MODC-BIOA intergenic region; PEPB family, lipid binding protein; HET: MSE EPE; 1.66A {Escherichia coli} SCOP: b.17.1.2 PDB: 1vi3_A*

Probab=99.18  E-value=1.1e-11  Score=87.33  Aligned_cols=30  Identities=27%  Similarity=0.462  Sum_probs=26.5

Q ss_pred             eeeecCCCCCCC-CceEEEEEEeeCC-ccccC
Q 035892           20 IVNYESPRPTMG-IHRFVFVLFRQLG-RQTVY   49 (99)
Q Consensus        20 i~~Y~~P~P~tG-~HRYvflLf~Q~~-~~~~~   49 (99)
                      ...|.||.||.| +|||+|+||+|+. .+.++
T Consensus       101 ~~~Y~GP~PP~g~~HRY~F~lyald~~~l~l~  132 (159)
T 1fjj_A          101 KTGYDGAAPPKGETHRYIFTVHALDIERIDVD  132 (159)
T ss_dssp             SBSCCCBCCSTTCCEEEEEEEEEESSSCCSCC
T ss_pred             CCcccCCCCcCCCceEEEEEEEEccCcccCCC
Confidence            678999999977 8999999999997 57765

>2evv_A Hypothetical protein HP0218; alpha-beta structure, dimer, structural genomics, PSI, prote structure initiative; HET: MSE; 2.59A {Helicobacter pylori}

Probab=99.18  E-value=2.1e-10  Score=84.06  Aligned_cols=58  Identities=14%  Similarity=0.100  Sum_probs=41.9

Q ss_pred             eeecCCCCCCCCceEEEEEEeeCC-ccccCCCCCCCCcCHHHHHHHhCCCCcEEEEEEEeeeCCC
Q 035892           21 VNYESPRPTMGIHRFVFVLFRQLG-RQTVYAPGWRQNFSTRDFAELYNLGPPVAAVYFNCQRESG   84 (99)
Q Consensus        21 ~~Y~~P~P~tG~HRYvflLf~Q~~-~~~~~~~~~R~~Fn~~~F~~~~~L~~pva~~~f~~~~d~~   84 (99)
                      +.|.||.||.|.|||+|.||+|+. .+.++     .+|...++.+...- -.+|-.-+...+...
T Consensus       144 ~~Y~GP~PP~G~HRYvF~vyALd~~~L~l~-----~~~~~~~l~~am~g-HvLa~a~l~g~y~r~  202 (207)
T 2evv_A          144 SVYIGPMPPNGDHHYLIQVYALDIPKLALK-----APFFLGDLHDKMRN-HIIAIGRKEFLYKQF  202 (207)
T ss_dssp             CSCCCCCCSSSCEEEEEEEEEESSSCCCCC-----SSCCHHHHHHHHTT-CEEEEEEEEEEECCC
T ss_pred             cccCCCCCCCCcEEEEEEEEEecCccCCCC-----CCCCHHHHHHHhhc-CeEEEEEEEEEEecc
Confidence            789999999999999999999997 67664     45666666655442 345655555555443

>1fux_A Hypothetical 19.5 kDa protein in EMRE-RUS intergenic region; beta protein, unknown function; 1.81A {Escherichia coli} SCOP: b.17.1.2

Probab=99.17  E-value=1.7e-11  Score=86.84  Aligned_cols=30  Identities=13%  Similarity=0.231  Sum_probs=26.1

Q ss_pred             eeeecCCCCC--CCCceEEEEEEeeCC-ccccC
Q 035892           20 IVNYESPRPT--MGIHRFVFVLFRQLG-RQTVY   49 (99)
Q Consensus        20 i~~Y~~P~P~--tG~HRYvflLf~Q~~-~~~~~   49 (99)
                      .+.|.||.||  +|+|||+|+||+|+. .+.++
T Consensus       103 ~~~Y~GP~PP~g~g~HRY~F~lyald~~~l~l~  135 (166)
T 1fux_A          103 YAGFGGACPPKGDKPHHYQFKVWALKTEKIPVD  135 (166)
T ss_dssp             SSSCCCBCCCTTCCCEECEEEEEEESCSCCCCC
T ss_pred             CccccCCCCcCCCCcEEEEEEEeEeccccCCCC
Confidence            6789999998  569999999999997 57764

>3n08_A Putative phosphatidylethanolamine-binding protein; eukarytic homolog RAF kinase inhibitor protein (RKIP). csgid structural genomics; 1.25A {Chlamydia trachomatis} SCOP: b.17.1.0

Probab=99.15  E-value=2.8e-10  Score=79.87  Aligned_cols=71  Identities=14%  Similarity=0.188  Sum_probs=49.6

Q ss_pred             cceeeeEEEE--------cccCc-----------eeeeecCCCCCCCCceEEEEEEeeCCccccCCCCCCCCcCHHHHHH
Q 035892            4 NLFHLHILLH--------MHAGQ-----------EIVNYESPRPTMGIHRFVFVLFRQLGRQTVYAPGWRQNFSTRDFAE   64 (99)
Q Consensus         4 ~~~~lHWlv~--------~~~g~-----------~i~~Y~~P~P~tG~HRYvflLf~Q~~~~~~~~~~~R~~Fn~~~F~~   64 (99)
                      .++|+||+|.        +..|.           ....|.||.||.|.|||+|+||+|+..+.+++     ++...++.+
T Consensus        60 ~~~~~HWvv~nIp~~~~~l~~g~~~g~~~g~n~~g~~~Y~GP~PP~g~HrY~F~vyAld~~L~l~~-----~~~~~~l~~  134 (153)
T 3n08_A           60 DGLWIHWIVYNLSPVVSNLAEGAQIFAVQGLNTAGEIGYCPPCPPDAKHRYYFYAYALDVVLSDEE-----GVTKEQLLE  134 (153)
T ss_dssp             TSCEEEEEEEEECTTCCEECTTCCCSSEECBCTTSSBSCCCCCCSSSCEEEEEEEEEESSCCCCCS-----SCCHHHHHH
T ss_pred             CCcEEEEEEEcCCCCcccccCCCCCCceEeecCCCCccccCCcCcCCCEEEEEEEEEECCcCCCCC-----CCCHHHHHH
Confidence            4689999999        11221           35789999999888999999999999876542     566666666


Q ss_pred             HhCCCCcEEEEEEEee
Q 035892           65 LYNLGPPVAAVYFNCQ   80 (99)
Q Consensus        65 ~~~L~~pva~~~f~~~   80 (99)
                      ...- -.+|-.-++..
T Consensus       135 a~~g-hvl~~a~l~g~  149 (153)
T 3n08_A          135 AMDG-HIIATAELMGT  149 (153)
T ss_dssp             HHTT-TEEEEEEEEEE
T ss_pred             Hhhh-CeEEEEEEEEE
Confidence            5443 34554444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	99
d1qoua_	164	b.17.1.1 (A:) Centroradialis protein Cen {Garden s	3e-26
d1a44a_	185	b.17.1.1 (A:) Phosphatidylethanolamine binding pro	5e-24
d1wpxb1	219	b.17.1.1 (B:501-719) Carboxypeptidase Y inhibitor	1e-17

>d1qoua_ b.17.1.1 (A:) Centroradialis protein Cen {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 164

class: All beta proteins
fold: PEBP-like
superfamily: PEBP-like
family: Phosphatidylethanolamine binding protein
domain: Centroradialis protein Cen
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 93.2 bits (231), Expect = 3e-26
 Identities = 37/70 (52%), Positives = 47/70 (67%), Gaps = 3/70 (4%)

Query: 17  GQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVYA---PGWRQNFSTRDFAELYNLGPPVA 73
           G+E+V+YE PRP +GIHRFVF+LF+Q  R           R  F+TR F +   LG PVA
Sbjct: 95  GKEVVSYEMPRPNIGIHRFVFLLFKQKKRGQAMLSPPVVCRDGFNTRKFTQENELGLPVA 154

Query: 74  AVYFNCQRES 83
           AV+FNCQRE+
Sbjct: 155 AVFFNCQRET 164

>d1a44a_ b.17.1.1 (A:) Phosphatidylethanolamine binding protein, PEBP {Cow (Bos taurus) [TaxId: 9913]} Length = 185

class: All beta proteins
fold: PEBP-like
superfamily: PEBP-like
family: Phosphatidylethanolamine binding protein
domain: Phosphatidylethanolamine binding protein, PEBP
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 87.7 bits (217), Expect = 5e-24
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 9/73 (12%)

Query: 17  GQEIVNYESPR--PTMGIHRFVFVLFRQLGRQTVYAP-------GWRQNFSTRDFAELYN 67
           G  + +Y         G+HR+V++++ Q G      P         R  F    F + Y 
Sbjct: 99  GTVLSDYVGSGPPKGTGLHRYVWLVYEQEGPLKCDEPILSNRSGDHRGKFKVASFRKKYE 158

Query: 68  LGPPVAAVYFNCQ 80
           LG PVA   +  +
Sbjct: 159 LGAPVAGTCYQAE 171

>d1wpxb1 b.17.1.1 (B:501-719) Carboxypeptidase Y inhibitor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 219

class: All beta proteins
fold: PEBP-like
superfamily: PEBP-like
family: Phosphatidylethanolamine binding protein
domain: Carboxypeptidase Y inhibitor
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.1 bits (176), Expect = 1e-17
 Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 13/78 (16%)

Query: 17  GQEIVNYESPRPTMGI--HRFVFVLFRQLGRQTVYA-------PGW---RQNFSTRDFAE 64
              ++ Y  P P  G   HR+VF+L++Q               P W           +A+
Sbjct: 143 SNTLIEYMGPAPPKGSGPHRYVFLLYKQPKGVDSSKFSKIKDRPNWGYGTPATGVGKWAK 202

Query: 65  LYNLGPPVAAVYFNCQRE 82
             NL   VA+ +F  + +
Sbjct: 203 ENNLQ-LVASNFFYAETK 219

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	99
d1a44a_	185	Phosphatidylethanolamine binding protein, PEBP {Co	99.97
d1qoua_	164	Centroradialis protein Cen {Garden snapdragon (Ant	99.96
d1wpxb1	219	Carboxypeptidase Y inhibitor {Baker's yeast (Sacch	99.93
d1fuxa_	165	Hypothetical protein YbcL {Escherichia coli [TaxId	98.26
d1fjja_	159	Hypothetical protein YbhB {Escherichia coli [TaxId	98.19

>d1a44a_ b.17.1.1 (A:) Phosphatidylethanolamine binding protein, PEBP {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: PEBP-like
superfamily: PEBP-like
family: Phosphatidylethanolamine binding protein
domain: Phosphatidylethanolamine binding protein, PEBP
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=1.2e-31  Score=192.18  Aligned_cols=84  Identities=24%  Similarity=0.471  Sum_probs=76.1

Q ss_pred             ccceeeeEEEE------cccCceeeeecCCCCC--CCCceEEEEEEeeCCccccCC-------CCCCCCcCHHHHHHHhC
Q 035892            3 ANLFHLHILLH------MHAGQEIVNYESPRPT--MGIHRFVFVLFRQLGRQTVYA-------PGWRQNFSTRDFAELYN   67 (99)
Q Consensus         3 ~~~~~lHWlv~------~~~g~~i~~Y~~P~P~--tG~HRYvflLf~Q~~~~~~~~-------~~~R~~Fn~~~F~~~~~   67 (99)
                      ++++||||||+      ++.|+++++|++|.|+  +|+|||+||||+|++++++++       ...|.+||+++|+++++
T Consensus        79 ~~~e~lHWlv~Ni~~~~~~~g~~l~~Y~~P~Pp~gtg~HRYvflLf~Q~~~~~~~~~~~~~~~~~~R~~f~~~~F~~~~~  158 (185)
T d1a44a_          79 KYREWHHFLVVNMKGNNISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQEGPLKCDEPILSNRSGDHRGKFKVASFRKKYE  158 (185)
T ss_dssp             TTCCEEEEEEEEEETTCGGGSEEEECCCCCCCCTTSCCEEEEEEEEECSSCCCCCCCCBCTTCCTTCTTCCHHHHHHHTT
T ss_pred             CcceEEEEEEeCCCCCcCCCCeEeeeEecCcCCCCCCceEEEEEEEEccCCCCccccccCCCCccccCCCCHHHHHHHcC
Confidence            57899999999      6789999999999997  899999999999998876643       26799999999999999


Q ss_pred             CCCcEEEEEEEeeeCCCCC
Q 035892           68 LGPPVAAVYFNCQRESGSG   86 (99)
Q Consensus        68 L~~pva~~~f~~~~d~~~~   86 (99)
                      |+.|||||||++|||+++.
T Consensus       159 L~~Pva~nfF~~~~D~~V~  177 (185)
T d1a44a_         159 LGAPVAGTCYQAEWDDYVP  177 (185)
T ss_dssp             CCSCSEEEEEEECCCTTHH
T ss_pred             CCCCeEEEEEEEecCcHHH
Confidence            9999999999999998754

>d1qoua_ b.17.1.1 (A:) Centroradialis protein Cen {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All beta proteins
fold: PEBP-like
superfamily: PEBP-like
family: Phosphatidylethanolamine binding protein
domain: Centroradialis protein Cen
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.96  E-value=7.3e-30  Score=178.73  Aligned_cols=81  Identities=49%  Similarity=0.830  Sum_probs=71.0

Q ss_pred             ccceeeeEEEE-------cccCceeeeecCCCCCCCCceEEEEEEeeCCccccC---CCCCCCCcCHHHHHHHhCCCCcE
Q 035892            3 ANLFHLHILLH-------MHAGQEIVNYESPRPTMGIHRFVFVLFRQLGRQTVY---APGWRQNFSTRDFAELYNLGPPV   72 (99)
Q Consensus         3 ~~~~~lHWlv~-------~~~g~~i~~Y~~P~P~tG~HRYvflLf~Q~~~~~~~---~~~~R~~Fn~~~F~~~~~L~~pv   72 (99)
                      ++++|||||++       ...|+++++|.+|.|++|+|||+||||+|++.....   ...+|.+||+++|++++||+.||
T Consensus        74 ~~~~~lHWlv~nip~~~~~~~~~~~~~Y~~P~P~tG~HRYvflLf~Q~~~~~~~~~~~~~~R~~F~~~~F~~~~~L~~Pv  153 (164)
T d1qoua_          74 YLREHLHWIVTDIPGTTDSSFGKEVVSYEMPRPNIGIHRFVFLLFKQKKRGQAMLSPPVVCRDGFNTRKFTQENELGLPV  153 (164)
T ss_dssp             TTCCEEEEEEEEEETTSBGGGSEEEECCCCCCCCSSCEEEEEEEEECSSCC-------CCCSBTCCHHHHHHHTTCCSCS
T ss_pred             ccceEEEEEEecCCCCccccCCceecccCCCCCCCceeEEEEEEEEcCCCcccccCCCccccCCcCHHHHHHHhCCCCce
Confidence            57899999999       446789999999999999999999999999875432   35789999999999999999999


Q ss_pred             EEEEEEeeeCC
Q 035892           73 AAVYFNCQRES   83 (99)
Q Consensus        73 a~~~f~~~~d~   83 (99)
                      |||||+||+|+
T Consensus       154 a~n~F~~q~~~  164 (164)
T d1qoua_         154 AAVFFNCQRET  164 (164)
T ss_dssp             EEEEEEECCCC
T ss_pred             eEEEEEeecCC
Confidence            99999999984

>d1wpxb1 b.17.1.1 (B:501-719) Carboxypeptidase Y inhibitor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: PEBP-like
superfamily: PEBP-like
family: Phosphatidylethanolamine binding protein
domain: Carboxypeptidase Y inhibitor
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.9e-26  Score=167.54  Aligned_cols=79  Identities=22%  Similarity=0.312  Sum_probs=67.6

Q ss_pred             ccceeeeEEEE------------------------cccCceeeeecCCCCC--CCCceEEEEEEeeCCccccCC------
Q 035892            3 ANLFHLHILLH------------------------MHAGQEIVNYESPRPT--MGIHRFVFVLFRQLGRQTVYA------   50 (99)
Q Consensus         3 ~~~~~lHWlv~------------------------~~~g~~i~~Y~~P~P~--tG~HRYvflLf~Q~~~~~~~~------   50 (99)
                      ++++|||||++                        ...|+++++|+||.|+  +|+|||+|+||+|+..++...      
T Consensus       105 ~~~~~~HWlv~nip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~gP~Pp~gtg~HRYvf~l~~Q~~~~~~~~~~~~~~  184 (219)
T d1wpxb1         105 KWSEFCHLVECDLKLLNEATHETSGATEFFASEFNTKGSNTLIEYMGPAPPKGSGPHRYVFLLYKQPKGVDSSKFSKIKD  184 (219)
T ss_dssp             TTCSEEEEEEEEEEECC---------CCEEEEEEECTTCEEEECCCCCCCCTTSCCEEEEEEEEECCTTCCGGGSCCCCC
T ss_pred             CcceEEEEEEecCCccccccccccCccccCcccccccCCceeecccCCCCCCCCCceEEEEEEEEccCCCCccccccccc
Confidence            57899999998                        1246789999999998  789999999999998765421      


Q ss_pred             ----CCCCCCcCHHHHHHHhCCCCcEEEEEEEeeeC
Q 035892           51 ----PGWRQNFSTRDFAELYNLGPPVAAVYFNCQRE   82 (99)
Q Consensus        51 ----~~~R~~Fn~~~F~~~~~L~~pva~~~f~~~~d   82 (99)
                          ...|.+||+++|++++||+ |||||||++|+.
T Consensus       185 ~~~~~~~R~~F~~~~F~~~~~L~-pVa~n~F~~q~~  219 (219)
T d1wpxb1         185 RPNWGYGTPATGVGKWAKENNLQ-LVASNFFYAETK  219 (219)
T ss_dssp             SBGGGCCSSSCSHHHHHHTTTCE-EEEEEEEEECCC
T ss_pred             ccccccccCCCCHHHHHHHhCCE-EEEEEEEEEecC
Confidence                1579999999999999997 999999999974

>d1fuxa_ b.17.1.2 (A:) Hypothetical protein YbcL {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PEBP-like
superfamily: PEBP-like
family: Prokaryotic PEBP-like proteins
domain: Hypothetical protein YbcL
species: Escherichia coli [TaxId: 562]

Probab=98.26  E-value=3.6e-07  Score=62.69  Aligned_cols=45  Identities=9%  Similarity=0.083  Sum_probs=30.1

Q ss_pred             eecCCCCC--CCCceEEEEEEeeCCc-cccCCCCCCCCcCHHHHHHHhCC
Q 035892           22 NYESPRPT--MGIHRFVFVLFRQLGR-QTVYAPGWRQNFSTRDFAELYNL   68 (99)
Q Consensus        22 ~Y~~P~P~--tG~HRYvflLf~Q~~~-~~~~~~~~R~~Fn~~~F~~~~~L   68 (99)
                      .|.||.||  .|.|||+|.||+.+.. +.+.+  ....-++.+.++.+-|
T Consensus       104 ~Y~gP~PP~G~~~H~Y~f~vyAL~~~~l~l~~--~~~~~~l~~ai~g~vl  151 (165)
T d1fuxa_         104 GFGGACPPKGDKPHHYQFKVWALKTEKIPVDS--NSSGALVGYMLNANKI  151 (165)
T ss_dssp             SCCCBCCCTTCCCEECEEEEEEESCSCCCCCT--TCCHHHHHHHHHTTEE
T ss_pred             CCCCCCCcCCCCcEEEEEEEEEcCCccCCCCC--CCCHHHHHHHHhhCEE
Confidence            49999998  5699999999998753 55432  2223345555554434

>d1fjja_ b.17.1.2 (A:) Hypothetical protein YbhB {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PEBP-like
superfamily: PEBP-like
family: Prokaryotic PEBP-like proteins
domain: Hypothetical protein YbhB
species: Escherichia coli [TaxId: 562]

Probab=98.19  E-value=8.7e-07  Score=60.37  Aligned_cols=45  Identities=20%  Similarity=0.259  Sum_probs=31.5

Q ss_pred             eecCCCCCCC-CceEEEEEEeeC-CccccCCCCCCCCcCHHHHHHHhCC
Q 035892           22 NYESPRPTMG-IHRFVFVLFRQL-GRQTVYAPGWRQNFSTRDFAELYNL   68 (99)
Q Consensus        22 ~Y~~P~P~tG-~HRYvflLf~Q~-~~~~~~~~~~R~~Fn~~~F~~~~~L   68 (99)
                      .|.||.||.| .|||+|.||+-+ +.+.+++...|  -++.+-++.+-|
T Consensus       103 ~Y~gPcPP~g~~H~Y~f~vyALd~~~l~l~~~~~~--~~l~~ai~g~vl  149 (159)
T d1fjja_         103 GYDGAAPPKGETHRYIFTVHALDIERIDVDEGASG--AMVGFNVHFHSL  149 (159)
T ss_dssp             SCCCBCCSTTCCEEEEEEEEEESSSCCSCCTTCCH--HHHHHHHHHHEE
T ss_pred             ceeCCCCcCCCcEEEEEEEEEecCccCCCCCCCCH--HHHHHHHhhCEE
Confidence            4999999966 799999999987 45665433333  245555665555